WorldWideScience

Sample records for brassicaceae

  1. Biosystematic studies on Brassicaceae (Cruciferae) in Egypt

    NARCIS (Netherlands)

    Abdel Khalik, K.N.E.

    2002-01-01

    The present work deals with a systematic investigation of 45 taxa belonging to 23 genera of the tribes Arabideae, Euclidieae, Hesperideae, Lunarieae, Matthioleae and Sisymbrieae of the family Brassicaceae from Egypt. This work is largely based on herbarium material received on loan fr

  2. Effects of Brassicaceae Isothiocyanates on Prostate Cancer

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    Silvia Novío

    2016-05-01

    Full Text Available Despite the major progress made in the field of cancer biology, cancer is still one of the leading causes of mortality, and prostate cancer (PCa is one of the most encountered malignancies among men. The effective management of this disease requires developing better anticancer agents with greater efficacy and fewer side effects. Nature is a large source for the development of chemotherapeutic agents, with more than 50% of current anticancer drugs being of natural origin. Isothiocyanates (ITCs are degradation products from glucosinolates that are present in members of the family Brassicaceae. Although they are known for a variety of therapeutic effects, including antioxidant, immunostimulatory, anti-inflammatory, antiviral and antibacterial properties, nowadays, cell line and animal studies have additionally indicated the chemopreventive action without causing toxic side effects of ITCs. In this way, they can induce cell cycle arrest, activate apoptosis pathways, increase the sensitivity of resistant PCa to available chemodrugs, modulate epigenetic changes and downregulate activated signaling pathways, resulting in the inhibition of cell proliferation, progression and invasion-metastasis. The present review summarizes the chemopreventive role of ITCs with a particular emphasis on specific molecular targets and epigenetic alterations in in vitro and in vivo cancer animal models.

  3. Notes on the family Brassicaceae in China

    Institute of Scientific and Technical Information of China (English)

    Dmitry A GERMAN; Wen-Li CHEN

    2009-01-01

    A critical revision of the collections of Brassicaceae in some Chinese (PE, XJA, XJBI, XJFA, XJNM, XJU) and foreign (LE, P) herbaria is made. One genus, Neurotropis (DC.) E K. Mey., and 11 species, Alyssum szarabiacum Nyar., Barbarea stricta Andrz., Erysimum czernjajevii N. Busch, Erysimum kotuchovii D. German, Erysimum mongolicum D. German, Lepidium karelinianum A1-Shehbaz, Matthiola superba Conti, Neurotropis platycarpa (Fisch. & Mey.) E K. Mey., Ptilotrichum dahuricum Peschkova, Sisymbrium subspinescens Bunge, and Smelowskia micrantha (Botsch. & Vved.) Al-Shehbaz & S. I. Warwick, are reported from China for the first time. Six species, Aphragmus involucratus (Bunge) O. E. Schulz, Dontostemonperennis C. A. Mey., Goldbachia torulosa DC., Lepidium amplexicaule Willd., Neotorularia brevipes (Kar. & Kir.) Hedge & J. Leonard, and Parrya stenocarpa Kar. & Kir., are confirmed to occurr in China. Five species, Dontostemon integrifolius (L.) C. A. Mey., Draba zangbeiensis L. L. Lou, Lepidium alashanicum H. L. Yang, Sinapis arvensis L., and Strigosella brevipes (Btmge) Botsch., are reported as novelties for some provinces in China, and Strigosella hispida (Litv.) Borsch. occurs in Xinjiang, China. However, the occurrence of one genus, Pseudoarabidopsis Al-Shehbaz, O'Kane & Price, and four species, Draba huetii Boiss., Eutrema halophilum (C. A. Mey.) Al-Shehbaz & S. I. Warwick, Galitzkya spathulata (Steph. ex Willd.) V. Bocz., and Pseudoarabidopsis toxophylla (Bieb.) Al-Shehbaz, O'Kane & Price, could not be confirmed in China. The occurrence of six species, Aphragmus bouffordii Al-Shehbaz, Barbarea orthoceras Ledeb., Lepidium latifolium L., Ptilotrichum canescens (DC.) C. A. Mey., Strigosella hispida (Litv.) Botsch., and Strigosella scorpioides (Bunge) Botsch., is not confirmed in certain provinces of China. All names follow the latest taxonomic treatment for relevant groups; detailed morphological descriptions of the newly recorded taxa are provided; and distinguishing

  4. Phylogeny, morphological evolution, and speciation of endemic brassicaceae genera in the cape flora of southern Africa

    NARCIS (Netherlands)

    Mummenhoff, K.; Al-Shehbaz, I.A.; Bakker, F.T.; Linder, H.P.; Mühlhausen, A.

    2005-01-01

    Heliophila (ca. 73 spp.), the ditypic Cycloptychis and Thlaspeocarpa, and the monotypic Schlechteria, Silicularia, Brachycarpaea, and Chamira are endemic to the Cape region of South Africa, where they are the dominant genera of Brassicaceae. They may be regarded as the most diversified Brassicaceae

  5. Selecting sprouts of brassicaceae for optimum phytochemical composition.

    Science.gov (United States)

    Baenas, Nieves; Moreno, Diego A; García-Viguera, Cristina

    2012-11-14

    Cruciferous foods (Brassicaceae spp.) are rich in nutrients and bioactive compounds. Edible sprouts are becoming popular fresh foods and, therefore, the phytochemical profiling of nine varieties of Brassicaceae (broccoli, kohlrabi, red cabbage, rutabaga, turnip, turnip greens, radish, garden cress, and white mustard) was evaluated for this purpose. The glucosinolates in seeds were significantly higher than in sprouts, and day 8 of germination was considered the optimum for consumption. The sprouts with higher concentrations of glucosinolates in 8-day-old sprouts were white mustard, turnip, and kohlrabi (∼815, ∼766, and ∼653 mg 100 g⁻¹ FW, respectively). Red cabbage and radish presented great total glucosinolates content (∼516 and ∼297 mg 100 g⁻¹ FW, respectively, in 8-day-old sprouts) and also higher total phenolic contents, biomass, and antioxidant capacity. The selection of the best performers in terms of germination quality and phytochemical composition is the key to optimize new fresh foods enriched in health-bioactive compounds. Further research on the bioavailability of the bioactive compounds in Brassica foods will allow backing of recommendations for dietarily effective dosages for nutrition and health.

  6. Molecular evolution of the transcription factor LEAFY in Brassicaceae.

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    Baum, David A; Yoon, Ho-Sung; Oldham, Rebecca L

    2005-10-01

    LEAFY (LFY) is a DNA-binding transcription factor that regulates floral meristem identity. LFY is unusual among angiosperm developmental regulators because it is not part of an extended gene family. Recent expression studies and transgenic experiments have suggested that changes at the LFY locus might have played a role in the evolution of rosette flowering, a modified plant architecture that has evolved at least three times in Brassicaceae. Here we examined the sequences of LFY genes from 16 species of Brassicaceae to evaluate whether gene duplication and/or the shift to rosette flowering correlate with changes in the molecular evolution of LFY. We found evidence of gene duplication in four taxa, but phylogenetic analysis suggested that duplicate genes have generally not persisted through multiple speciation events. This result can be explained if LFY is prone to be lost by drift due to a low probability of subfunctionalization or neofunctionalization. Despite great heterogeneity in dN/dS ratios, duplicate genes show a significant tendency to have elevated dN/dS ratios. Rosette-flowering lineages also show elevated dN/dS ratios and two of the rosette-flowering taxa, Idahoa and Leavenworthia, have some radical amino acid substitutions that are candidates for having played a causal role in the evolution of rosette flowering.

  7. Macro- and micromorphological studies of Clypeola species (Brassicaceae in Iran

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    Sousan Abbasian

    2016-06-01

    Full Text Available Clypeola is an annual genus from Brassicaceae with four (C. jonthlaspi, C. aspera, C. lappacea and C. dichotoma species in Iran. These are plants of different habitats and found as early spring therophytes in semiarid regions of Iran. In this study 63 populations of Clypeola genus have been studied by 49 macro- and micromorphological features. Results were analyzed by use of multivariate statistical methods. Cluster analysis, factor analysis and ordination methods were applied. The result showed that such characters as pedicle, trichome, stamen, petal features and sculpture of fruit surface have valuable diagnostic in separating of these species. In present study it was also found that the use of seed surface character in not effective alone for taxa delimitation except of some C. jonthlaspi subspecies. Among leaf features, trichome ornamentations, their position and branching pattern are effective for species separation. Fruit hairs are of diagnostics importance in species separation too.

  8. Health Promoting Effects of Phytochemicals from Brassicaceae: A Review.

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    Savinder Kaur Mann and Namita Khanna

    2013-09-01

    Full Text Available Over the past several years, natural antioxidants have attracted considerable interest as potential treatment for a wide variety of disease states, including cancer and other causes e.g. chronic inflammatory diseases and aging. Therefore, plant derived antioxidants are now receiving a special attention as they possess good antioxidant properties and hence a worldwide trend towards the use of natural phytochemicals present in fruits and vegetables have been reported. Numerous epidemiological studies indicate that consumption of cruciferous vegetables is associated with prevention of cardiovascular diseases and reduced incidence of cancers of the gastrointestinal tract and other sites. The substances that seem to be responsible for these properties are phenolic compounds (phenolic acids, flavonoids, polyphenols etc. and sulphur-containing organic compound glucosinolates and their derived products. The present review focuses on the health promoting effects of phytochemicals and their beneficial bioactivities in Brassicaceae.

  9. THE FAMILY OF BRASSICACEAE BURNETT IN THE FLORA OF THE CITY GROZNY

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    R. S. Erzhapova

    2012-01-01

    Full Text Available The article provides a list of species BRASSICACEAE BURNETT of urbanized flora of the city of Grozny. The article also gives a brief, ecological, geographical, chorological affinity, life form, resource significance.

  10. Reproduction on orbit by plants in the Brassicaceae family

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    Musgrave, Mary E.; Kuang, Anxiu; Xiao, Ying; Matthews, Sharon W.

    1999-01-01

    Previous studies on growth and development during spaceflight had indicated that the transition from vegetative to reproductive growth was particularly difficult for plants. Our objective has been to study how the spaceflight environment impacts the different steps in plant reproduction. This goal has been pursued in two general ways: by using plants that had been pre-grown to the flowering stage on earth, and by using plants that developed completely on orbit. Our objectives have been met by a combination of experiments that required essentially no crew time on orbit, and those that required an extensive commitment of crew time. The plants chosen for the studies were closely related members of the family Brassicaceae: Arabidopsis thaliana and Brassica rapa. In a series of short-duration experiments with Arabidopsis on the space shuttle we found that depletion of carbon dioxide in closed chambers resulted in aborted development of both the male and female reproductive apparatus in microgravity. Normal development was restored by addition of carbon dioxide or by providing air flow. A subsequent shuttle experiment with Brassica utilizing hardware that provides a vigorous air flow confirmed embryo development following pollination on orbit. Brassica plants grown from seed on the Mir space station produced seed that germinated and grew when replanted on orbit. Future experiments will determine effects of multiple generations in space.

  11. Resolution of Brassicaceae Phylogeny Using Nuclear Genes Uncovers Nested Radiations and Supports Convergent Morphological Evolution.

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    Huang, Chien-Hsun; Sun, Renran; Hu, Yi; Zeng, Liping; Zhang, Ning; Cai, Liming; Zhang, Qiang; Koch, Marcus A; Al-Shehbaz, Ihsan; Edger, Patrick P; Pires, J Chris; Tan, Dun-Yan; Zhong, Yang; Ma, Hong

    2016-02-01

    Brassicaceae is one of the most diverse and economically valuable angiosperm families with widely cultivated vegetable crops and scientifically important model plants, such as Arabidopsis thaliana. The evolutionary history, ecological, morphological, and genetic diversity, and abundant resources and knowledge of Brassicaceae make it an excellent model family for evolutionary studies. Recent phylogenetic analyses of the family revealed three major lineages (I, II, and III), but relationships among and within these lineages remain largely unclear. Here, we present a highly supported phylogeny with six major clades using nuclear markers from newly sequenced transcriptomes of 32 Brassicaceae species and large data sets from additional taxa for a total of 55 species spanning 29 out of 51 tribes. Clade A consisting of Lineage I and Macropodium nivale is sister to combined Clade B (with Lineage II and others) and a new Clade C. The ABC clade is sister to Clade D with species previously weakly associated with Lineage II and Clade E (Lineage III) is sister to the ABCD clade. Clade F (the tribe Aethionemeae) is sister to the remainder of the entire family. Molecular clock estimation reveals an early radiation of major clades near or shortly after the Eocene-Oligocene boundary and subsequent nested divergences of several tribes of the previously polytomous Expanded Lineage II. Reconstruction of ancestral morphological states during the Brassicaceae evolution indicates prevalent parallel (convergent) evolution of several traits over deep times across the entire family. These results form a foundation for future evolutionary analyses of structures and functions across Brassicaceae.

  12. Effect of sulfur fertilization on the sanitary state of plants of the family Brassicaceae

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    Tomasz P. Kurowski

    2012-12-01

    Full Text Available The experiment was carried out in the years 2006-2008 in Bałcyny (N=53°35'49"; E=19°51'20". The aim of this study was to determine the effect of sulfur fertilization on the sanitary state of spring oilseed rape, winter oilseed rape, white mustard and Chinese mustard as well as on the species composition of fungi colonizing their seeds. Sulfur fertilization had a beneficial effect on the health of Brassicaceae plants infested by Alternaria blight, grey mould, Sclerotinia stem rot, Phoma stem canker and Verticillium wilt, but it had a varying effect on the occurrence of powdery mildew. Alternaria alternata and Penicillium spp. were isolated most frequently from Brassicaceae seeds. In general, more fungi (including pathogenic to Brassicaceae were isolated from the seeds of plants grown in non-sulfur fertilized plots. Pathogens occurred primarily on the seed surface, and their number decreased after surface disinfection of seeds.

  13. Comparison in accumulation of lanthanide elements among three Brassicaceae plant sprouts.

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    Anan, Yasumi; Awaya, Yumi; Ogihara, Yurie; Yoshida, Miyuki; Yawata, Ayako; Ogra, Yasumitsu

    2012-07-01

    Three kinds of sprouts in the Brassicaceae family of plants, namely, pink kale, radish and mustard were evaluated for the possibility of phytoremediation of lanthanides. The mustard sprout more efficiently accumulated lanthanides (e.g. 0.26 nmol La/g) than other Brassicaceae family plant sprouts (0.16 nmol La/g in the radish), however the radish sprout showed the fastest growth among three sprouts. Faster growth compensated for less efficiency in lanthanide accumulation (28 pmol La in the radish vs. 12 pmol La in the mustard) indicating that the radish is the most preferable sprout for the phytoremediation of lanthanides.

  14. Plant-mediated effects in the Brassicaceae on the performance and behaviour of parasitoids

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    Gols, R.; Harvey, J.A.

    2009-01-01

    Direct and indirect plant defences are well studied, particularly in the Brassicaceae. Glucosinolates (GS) are secondary plant compounds characteristic in this plant family. They play an important role in defence against herbivores and pathogens. Insect herbivores that are specialists on brassicaceo

  15. High-Performance Liquid Chromatography–Mass Spectrometry Analysis of Plant Metabolites in Brassicaceae

    NARCIS (Netherlands)

    Vos, de C.H.; Schipper, A.; Hall, R.D.

    2012-01-01

    The Brassicaceae family comprises a variety of plant species that are of high economic importance as -vegetables or industrial crops. This includes crops such as Brassica rapa (turnip, Bok Choi), B. oleracea (cabbages, broccoli, cauliflower, etc.), and B. napus (oil seed rape), and also includes the

  16. Progress in Brassicaceae seed meal formulation and application for replant disease control in organic apple orchards

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    Brassicaceae seed meals when used independently do not provide uniform or sufficient control of the pathogen complex that incites apple replant disease. Trials were established at multiple sites (STM, SR and Tukey orchards) in Washington State to evaluate the efficacy of seed meal formulations for ...

  17. Assessing the risk of Glyphosate to native plants and weedy Brassicaceae species of North Dakota

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    This study was conducted to determine the ecological risk to native plants and weedy Brassicaceae species which may be growing in areas affected by off target movement of glyphosate applied to glyphosate-resistant canola (Brassica napus). Ten native grass and forb species were ...

  18. Brassicaceae: nutrient analysis and investigation of tolerability in people with Crohn’s disease in a New Zealand study

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    Bobbi Campbell

    2012-11-01

    Full Text Available Background: Nutrition is an important environmental factor influencing symptoms of Crohn’s disease, one of the two main expressions of inflammatory bowel disease. Varieties of Brassicaceae supply valuable nutrients. They are often avoided by people with Crohn’s disease because of the adverse effects they are perceived to have on symptoms. The purpose of this study was to review the nutritional content of commonly eaten forms of Brassicaceae and identify from selected Brassicaceae those that exacerbate, ameliorate or make no difference to the symptoms of people with Crohn’s Disease. Methods: In this study commonly eaten Brassicaceae were identified and analysed for major nutrients, vitamins, minerals, phytochemicals and FODMAPs. An investigation on the tolerability of ten forms of Brassicaceae on people with Crohn’s disease was also conducted. This was based on the responses of adult subjects in the ‘Genes and Diet in Inflammatory Bowel Disease Study’ based in Auckland, New Zealand. Results: The nutrient analysis of the Brassicaceae showed their important contribution of fibre, vitamins, minerals, and phytochemicals, especially glucosinolates. Our study revealed that over 70% of respondents found that the consumption of broccoli, Chinese greens and rocket (arugula made no difference to their Crohn’s disease (p=0.0001.Conclusions: Brassicaceae contain key nutrients which contribute significantly to a person’s health through their fibre, vitamin, mineral and phytochemical content. Many people with Crohn’s Disease can tolerate different forms of Brassicaceae. By identifying the particular varieties that can be consumed by people with Crohn’s disease and encouraging them to eat them, their nutrition, immune status and anti-inflammatory and anti-cancer factors will be enhanced.

  19. Glucosinolate metabolism, functionality and breeding for the improvement of Brassicaceae vegetables.

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    Ishida, Masahiko; Hara, Masakazu; Fukino, Nobuko; Kakizaki, Tomohiro; Morimitsu, Yasujiro

    2014-05-01

    Unique secondary metabolites, glucosinolates (S-glucopyranosyl thiohydroximates), are naturally occurring S-linked glucosides found mainly in Brassicaceae plants. They are enzymatically hydrolyzed to produce sulfate ions, D-glucose, and characteristic degradation products such as isothiocyanates. The functions of glucosinolates in the plants remain unclear, but isothiocyanates possessing a pungent or irritating taste and odor might be associated with plant defense from microbes. Isothiocyanates have been studied extensively in experimental in vitro and in vivo carcinogenesis models for their cancer chemopreventive properties. The beneficial isothiocyanates, glucosinolates that are functional for supporting human health, have received attention from many scientists studying plant breeding, plant physiology, plant genetics, and food functionality. This review presents a summary of recent topics related with glucosinolates in the Brassica family, along with a summary of the chemicals, metabolism, and genes of glucosinolates in Brassicaceae. The bioavailabilities of isothiocyanates from certain functional glucosinolates and the importance of breeding will be described with emphasis on glucosinolates.

  20. BrassiBase: introduction to a novel knowledge database on Brassicaceae evolution.

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    Kiefer, Markus; Schmickl, Roswitha; German, Dmitry A; Mandáková, Terezie; Lysak, Martin A; Al-Shehbaz, Ihsan A; Franzke, Andreas; Mummenhoff, Klaus; Stamatakis, Alexandros; Koch, Marcus A

    2014-01-01

    The Brassicaceae family (mustards or crucifers) includes Arabidopsis thaliana as one of the most important model species in plant biology and a number of important crop plants such as the various Brassica species (e.g. cabbage, canola and mustard). Moreover, the family comprises an increasing number of species that serve as study systems in many fields of plant science and evolutionary research. However, the systematics and taxonomy of the family are very complex and access to scientifically valuable and reliable information linked to species and genus names and its interpretation are often difficult. BrassiBase is a continuously developing and growing knowledge database (http://brassibase.cos.uni-heidelberg.de) that aims at providing direct access to many different types of information ranging from taxonomy and systematics to phylo- and cytogenetics. Providing critically revised key information, the database intends to optimize comparative evolutionary research in this family and supports the introduction of the Brassicaceae as the model family for evolutionary biology and plant sciences. Some features that should help to accomplish these goals within a comprehensive taxonomic framework have now been implemented in the new version 1.1.9. A 'Phylogenetic Placement Tool' should help to identify critical accessions and germplasm and provide a first visualization of phylogenetic relationships. The 'Cytogenetics Tool' provides in-depth information on genome sizes, chromosome numbers and polyploidy, and sets this information into a Brassicaceae-wide context.

  1. High-performance liquid chromatography-mass spectrometry analysis of plant metabolites in brassicaceae.

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    De Vos, Ric C H; Schipper, Bert; Hall, Robert D

    2012-01-01

    The Brassicaceae family comprises a variety of plant species that are of high economic importance as -vegetables or industrial crops. This includes crops such as Brassica rapa (turnip, Bok Choi), B. oleracea (cabbages, broccoli, cauliflower, etc.), and B. napus (oil seed rape), and also includes the famous genetic model of plant research, Arabidopsis thaliana (thale cress). Brassicaceae plants contain a large variety of interesting secondary metabolites, including glucosinolates, hydroxycinnamic acids, and flavonoids. These metabolites are also of particular importance due to their proposed positive effects on human health. Next to these well-known groups of phytochemicals, many more metabolites are of course also present in crude extracts prepared from Brassica and Arabidopsis plant material.High-pressure liquid chromatography coupled to mass spectrometry (HPLC-MS), especially if combined with a high mass resolution instrument such as a QTOF MS, is a powerful approach to separate, detect, and annotate metabolites present in crude aqueous-alcohol plant extracts. Using an essentially unbiased procedure that takes into account all metabolite mass signals from the raw data files, detailed information on the relative abundance of hundreds of both known and, as yet, unknown semipolar metabolites can be obtained. These comprehensive metabolomics data can then be used to, for instance, identify genetic markers regulating metabolic composition, determine effects of (a)biotic stress or specific growth conditions, or establish metabolite changes occurring upon food processing or storage.This chapter describes in detail a procedure for preparing crude extracts and performing comprehensive HPLC-QTOF MS-based profiling of semi-polar metabolites in Brassicaceae plant material. Compounds present in the extract can be (partially or completely) annotated based on their accurate mass, their MS/MS fragments and on other specific chemical characteristics such as retention time and UV

  2. Secondary evolution of a self-incompatibility locus in the Brassicaceae genus Leavenworthia.

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    Sier-Ching Chantha

    Full Text Available Self-incompatibility (SI is the flowering plant reproductive system in which self pollen tube growth is inhibited, thereby preventing self-fertilization. SI has evolved independently in several different flowering plant lineages. In all Brassicaceae species in which the molecular basis of SI has been investigated in detail, the product of the S-locus receptor kinase (SRK gene functions as receptor in the initial step of the self pollen-rejection pathway, while that of the S-locus cysteine-rich (SCR gene functions as ligand. Here we examine the hypothesis that the S locus in the Brassicaceae genus Leavenworthia is paralogous with the S locus previously characterized in other members of the family. We also test the hypothesis that self-compatibility in this group is based on disruption of the pollen ligand-producing gene. Sequence analysis of the S-locus genes in Leavenworthia, phylogeny of S alleles, gene expression patterns, and comparative genomics analyses provide support for both hypotheses. Of special interest are two genes located in a non-S locus genomic region of Arabidopsis lyrata that exhibit domain structures, sequences, and phylogenetic histories similar to those of the S-locus genes in Leavenworthia, and that also share synteny with these genes. These A. lyrata genes resemble those comprising the A. lyrata S locus, but they do not function in self-recognition. Moreover, they appear to belong to a lineage that diverged from the ancestral Brassicaceae S-locus genes before allelic diversification at the S locus. We hypothesize that there has been neo-functionalization of these S-locus-like genes in the Leavenworthia lineage, resulting in evolution of a separate ligand-receptor system of SI. Our results also provide support for theoretical models that predict that the least constrained pathway to the evolution of self-compatibility is one involving loss of pollen gene function.

  3. UAE-HPLC-UV: New Contribution for Fast Determination of Total Isothiocyanates in Brassicaceae Vegetables

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    Cecilia M. Fusari

    2015-01-01

    Full Text Available Total isothiocyanates content (ITC is considered a good indicator of bioactive compounds responsible for beneficial effects related to Brassicaceae vegetables. Analytical performance is a critical factor for routine analysis in plant tissues. The extraction technique for isolating phytochemicals from Brassicaceae vegetables is currently the bottleneck of the methodology. The aim of this work was to optimize this step in the analytical process. Fast and less expensive alternative, based on ultrasound-assisted extraction technique (UAE for direct extraction of GLS into an aqueous phase and further analysis of the hydrolysis product, was optimized. Full factorial (2k design followed by Central Composite Design (CCD was used to obtain the optimum extraction conditions. Selected conditions were homogenization time (9 min; ultrasound bath time (5 min; and sample-to-solvent ratio (1 : 5 w/v mg mL−1. The proposed analytical methodology exhibits satisfactory analytical performance in terms of linearity, precision (RSD < 2.4%, and limits of detection (26 nmol g−1 w.w.. The new analytical methodology was applied to cauliflower, cabbage, watercress, and broccoli samples with recoveries higher than 86%. The UAE extraction technique was showed to be efficient for real samples analysis leading to sensible, selective, and reproducible methodology for ITC analysis.

  4. Evolution and protein interactions of AP2 proteins in Brassicaceae:Evidence linking development and environmental responses

    Institute of Scientific and Technical Information of China (English)

    Liping Zeng; Yue Yin; Chenjiang You; Qianli Pan; Duo Xu; Taijie Jin; Bailong Zhang; and Hong Ma

    2016-01-01

    Plants have evolved a large number of transcrip-tion factors (TF), which are enriched among duplicate genes, highlighting their roles in complex regulatory networks. The APETALA2/EREBP-like genes constitute a large plant TF family and participate in development and stress responses. To probe the conservation and divergence of AP2/EREBP genes, we analyzed the duplication patterns of this family in Brassicaceae and identified interacting proteins of represen-tative Arabidopsis AP2/EREBP proteins. We found that many AP2/EREBP duplicates generated early in Brassicaceae history were quickly lost, but many others were retained in all tested Brassicaceae species, suggesting early functional divergence followed by persistent conservation. In addition, the sequences of the AP2 domain and exon numbers were highly conserved in rosids. Furthermore, we used 16 A. thaliana AP2/EREBP proteins as baits in yeast screens and identified 1,970 potential AP2/EREBP-interacting proteins, with a small subset of interactions verified in planta. Many AP2 genes also exhibit reduced expression in an anther- defective mutant, providing a possible link to developmental regulation. The putative AP2-interacting proteins participate in many functions in development and stress responses, including photomorphogenesis, flower development, path-ogenesis, drought and cold responses, abscisic acid and auxin signaling. Our results present the AP2/EREBP evolution patterns in Brassicaceae, and support a proposed interaction network of AP2/EREBP proteins and their putative interacting proteins for further study.

  5. Seed morphology of some tribes of Brassicaceae (implications for taxonomy and species identification for the flora of Egypt)

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    Khalik, K. Abdel; Maesen, van der L.J.G.

    2002-01-01

    Seed morphology of 45 taxa belonging to 23 genera of Brassicaceae were examined using light and scanning electron microscopy. The taxa included representatives of the tribes Arabideae, Euclidieae, Hesperideae, Lunarieae, Matthioleae, and Sisymbrieae, which all occur in Egypt. Macro- and micromorphol

  6. Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.

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    Simon, Samson; Rühl, Mark; de Montaigu, Amaury; Wötzel, Stefan; Coupland, George

    2015-09-01

    Environmental control of flowering allows plant reproduction to occur under optimal conditions and facilitates adaptation to different locations. At high latitude, flowering of many plants is controlled by seasonal changes in day length. The photoperiodic flowering pathway confers this response in the Brassicaceae, which colonized temperate latitudes after divergence from the Cleomaceae, their subtropical sister family. The CONSTANS (CO) transcription factor of Arabidopsis thaliana, a member of the Brassicaceae, is central to the photoperiodic flowering response and shows characteristic patterns of transcription required for day-length sensing. CO is believed to be widely conserved among flowering plants; however, we show that it arose after gene duplication at the root of the Brassicaceae followed by divergence of transcriptional regulation and protein function. CO has two close homologs, CONSTANS-LIKE1 (COL1) and COL2, which are related to CO by tandem duplication and whole-genome duplication, respectively. The single CO homolog present in the Cleomaceae shows transcriptional and functional features similar to those of COL1 and COL2, suggesting that these were ancestral. We detect cis-regulatory and codon changes characteristic of CO and use transgenic assays to demonstrate their significance in the day-length-dependent activation of the CO target gene FLOWERING LOCUS T. Thus, the function of CO as a potent photoperiodic flowering switch evolved in the Brassicaceae after gene duplication. The origin of CO may have contributed to the range expansion of the Brassicaceae and suggests that in other families CO genes involved in photoperiodic flowering arose by convergent evolution.

  7. Biochemical and biological characterization of two Brassicaceae after their commercial expiry date.

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    Ombra, Maria Neve; Cozzolino, Autilia; Nazzaro, Filomena; d'Acierno, Antonio; Tremonte, Patrizio; Coppola, Raffaele; Fratianni, Florinda

    2017-03-01

    Two Brassicaceae (Eruca sativa, Brassica oleracea var. sabauda) were stored in air and under a modified atmosphere for several days after their expiry date and then analyzed. The polyphenol content and composition, as well as the antioxidant activity of the extracts, were assessed, compared to the fresh products. Antimicrobial properties on tester strains (Bacillus cereus, Escherichia coli, Staphylococcus aureus and Pseudomonas aeruginosa) and in vitro anti-proliferative activity were evaluated. The cabbage extracts exhibited antimicrobial activity mainly on the ninth day after the expiry date and retained significant inhibitory effects against colon carcinoma (CaCo-2) cells. The rocket salad extract exhibited antiproliferative but not antimicrobial activity. Overall, our results indicated that they might represent a good source of natural antioxidants with antimicrobial and anti-proliferative activity, also after their expiry date, suggesting their exploitation for the recovery of important biomolecules used in the food and health industry.

  8. An EST-SSR linkage map of Raphanus sativus and comparative genomics of the Brassicaceae.

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    Shirasawa, Kenta; Oyama, Maki; Hirakawa, Hideki; Sato, Shusei; Tabata, Satoshi; Fujioka, Takashi; Kimizuka-Takagi, Chiaki; Sasamoto, Shigemi; Watanabe, Akiko; Kato, Midori; Kishida, Yoshie; Kohara, Mitsuyo; Takahashi, Chika; Tsuruoka, Hisano; Wada, Tsuyuko; Sakai, Takako; Isobe, Sachiko

    2011-08-01

    Raphanus sativus (2n = 2x = 18) is a widely cultivated member of the family Brassicaceae, for which genomic resources are available only to a limited extent in comparison to many other members of the family. To promote more genetic and genomic studies and to enhance breeding programmes of R. sativus, we have prepared genetic resources such as complementary DNA libraries, expressed sequences tags (ESTs), simple sequence repeat (SSR) markers and a genetic linkage map. A total of 26 606 ESTs have been collected from seedlings, roots, leaves, and flowers, and clustered into 10 381 unigenes. Similarities were observed between the expression patterns of transcripts from R. sativus and those from representative members of the genera Arabidopsis and Brassica, indicating their functional relatedness. The EST sequence data were used to design 3800 SSR markers and consequently 630 polymorphic SSR loci and 213 reported marker loci have been mapped onto nine linkage groups, covering 1129.2 cM with an average distance of 1.3 cM between loci. Comparison of the mapped EST-SSR marker positions in R. sativus with the genome sequence of A. thaliana indicated that the Brassicaceae members have evolved from a common ancestor. It appears that genomic fragments corresponding to those of A. thaliana have been doubled and tripled in R. sativus. The genetic map developed here is expected to provide a standard map for the genetics, genomics, and molecular breeding of R. sativus as well as of related species. The resources are available at http://marker.kazusa.or.jp/Daikon.

  9. Inheritance and expression patterns of BN28, a low temperature induced gene in Brassica napus, throughout the Brassicaceae.

    Science.gov (United States)

    Hawkins, G P; Nykiforuk, C L; Johnson-Flanagan, A M; Boothe, J G

    1996-08-01

    Molecular genetics is becoming an important tool in the breeding and selection of agronomically important traits. BN28 is a low temperature induced gene in Brassicaceae species. PCR and Southern blot analysis indicate that BN28 is polymorphic in the three diploid genomes: Brassica rapa (AA), Brassica nigra (BB), and Brassica oleracea (CC). Of the allotetraploids, Brassica napus (AACC) is the only species to have inherited homologous genes from both parental genomes. Brassica juncea (AABB) and Brassica carinata (BBCC) have inherited homologues from the AA and CC genomes, respectively, while Sinapsis arvensis (SS) contains a single homologue from the BB genome and Sinapsis alba (dd) appears to be different from all the diploid parents. All species show message induction when exposed to low temperature. However, differences in expression were noticed at the protein level, with silencing occurring in the BB genome at the level of translation. Results suggest that silencing is occurring in diploid species where duplication may not have occurred. Molecular characterization and inheritance of BN28 homologues in the Brassicaceae may play an important role in determining their quantitative function during exposure to low temperature. Key words : Brassicaceae, BN28, inheritance, polymorphism.

  10. Hydrogen sulfide releasing capacity of natural isothiocyanates: is it a reliable explanation for the multiple biological effects of Brassicaceae?

    Science.gov (United States)

    Citi, Valentina; Martelli, Alma; Testai, Lara; Marino, Alice; Breschi, Maria C; Calderone, Vincenzo

    2014-06-01

    Hydrogen sulfide is an endogenous pleiotropic gasotransmitter, which mediates important physiological effects in the human body. Accordingly, an impaired production of endogenous hydrogen sulfide contributes to the pathogenesis of important disorders. To date, exogenous compounds, acting as hydrogen sulfide-releasing agents, are viewed as promising pharmacotherapeutic agents. In a recent report, the hydrogen sulfide-releasing properties of some synthetic aryl isothiocyanate derivatives have been reported, indicating that the isothiocyanate function can be viewed as a suitable slow hydrogen sulfide-releasing moiety, endowed with the pharmacological potential typical of this gasotransmitter. Many isothiocyanate derivatives (deriving from a myrosinase-mediated transformation of glucosinolates) are well-known secondary metabolites of plants belonging to the family Brassicaceae, a large botanical family comprising many edible species. The phytotherapeutic and nutraceutic usefulness of Brassicaceae in the prevention of important human diseases, such as cancer, neurodegenerative processes and cardiovascular diseases has been widely discussed in the scientific literature. Although these effects have been largely attributed to isothiocyanates, the exact mechanism of action is still unknown. In this experimental work, we aimed to investigate the possible hydrogen sulfide-releasing capacity of some important natural isothiocyanates, studying it in vitro by amperometric detection. Some of the tested natural isothiocyanates exhibited significant hydrogen sulfide release, leading us to hypothesize that hydrogen sulfide may be, at least in part, a relevant player accounting for several biological effects of Brassicaceae.

  11. Seed storage protein gene promoters contain conserved DNA motifs in Brassicaceae, Fabaceae and Poaceae

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    Fauteux François

    2009-10-01

    Full Text Available Abstract Background Accurate computational identification of cis-regulatory motifs is difficult, particularly in eukaryotic promoters, which typically contain multiple short and degenerate DNA sequences bound by several interacting factors. Enrichment in combinations of rare motifs in the promoter sequence of functionally or evolutionarily related genes among several species is an indicator of conserved transcriptional regulatory mechanisms. This provides a basis for the computational identification of cis-regulatory motifs. Results We have used a discriminative seeding DNA motif discovery algorithm for an in-depth analysis of 54 seed storage protein (SSP gene promoters from three plant families, namely Brassicaceae (mustards, Fabaceae (legumes and Poaceae (grasses using backgrounds based on complete sets of promoters from a representative species in each family, namely Arabidopsis (Arabidopsis thaliana (L. Heynh., soybean (Glycine max (L. Merr. and rice (Oryza sativa L. respectively. We have identified three conserved motifs (two RY-like and one ACGT-like in Brassicaceae and Fabaceae SSP gene promoters that are similar to experimentally characterized seed-specific cis-regulatory elements. Fabaceae SSP gene promoter sequences are also enriched in a novel, seed-specific E2Fb-like motif. Conserved motifs identified in Poaceae SSP gene promoters include a GCN4-like motif, two prolamin-box-like motifs and an Skn-1-like motif. Evidence of the presence of a variant of the TATA-box is found in the SSP gene promoters from the three plant families. Motifs discovered in SSP gene promoters were used to score whole-genome sets of promoters from Arabidopsis, soybean and rice. The highest-scoring promoters are associated with genes coding for different subunits or precursors of seed storage proteins. Conclusion Seed storage protein gene promoter motifs are conserved in diverse species, and different plant families are characterized by a distinct combination

  12. Numerical taxonomy of the genus Matthiola (Brassicaceae in Northeast of Iran based on morphological traits

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    Mozhgan Rashid Taranloo

    2014-01-01

    Full Text Available The genus Matthiola R. BR. (Brassicaceae consists of 48 species in the Iranian plateau, of which only seven species are distributed in northeast of Iran. Six species erre collected from the region under study including M. afghanica, M. alyssifolia, M. chenopodiifolia, M. chorassanica, M. dumulosa and M. farinose. Two species, M. flavida and M. revoluta were recorded for the first time in this study. Some specimens of an unknown taxon entitled Matthiola sp. are also collected in the region and included in the present study. In this study, we tried to use a set of morphologically informative characters which could determine species boundaries and also provide appropriate identification key to the genus in the northeast of Iran. 71 morphological features including quantitative and qualitative were examined on 68 herbarium and field-collected accessions followed by statistical analyses. The results of the univariate analysis indicated that "presence/absence of trichome on the stem and leaf" and "presence/absence of glandular trichomes on the sepal and pedicel" did not significantly differentiate the species and they were excluded from the subsequent analysis. The results of multivariate analysis showed that the species under study were grouped within three groups. First group included specimens of the species M. alyssifolia, the species M. afghanica, M. chenopodiifolia, M. dumulosa, M. farinosa, M. flavida and Matthiola sp. were placed in second group and third group included specimens of the two species M. chorassanica and M. revoluta.

  13. Lead tolerance and accumulation in Hirschfeldia incana, a Mediterranean Brassicaceae from metalliferous mine spoils.

    Science.gov (United States)

    Auguy, Florence; Fahr, Mouna; Moulin, Patricia; Brugel, Anaïs; Laplaze, Laurent; Mzibri, Mohamed El; Filali-Maltouf, Abdelkarim; Doumas, Patrick; Smouni, Abdelaziz

    2013-01-01

    Lead is a heavy metal of particular concern with respect to environmental quality and health. The lack of plant species that accumulate and tolerate Pb is a limiting factor to understand the molecular mechanisms involved in Pb tolerance. In this study we identified Hirschfeldia incana, a Brassicaceae collected from metalliferous mine spoils in Morocco, as a Pb accumulator plant. H. incana exhibited high Pb accumulation in mine soils and in hydroponic cultures. Major Pb accumulation occurred in the roots and a part of Pb translocated from the roots to the shoots, even to the siliques. These findings demonstrated that H. incana is a Pb accumulator species. The expression of several candidate genes after Pb-exposure was measured by quantitative PCR and two of them, HiHMA4 and HiMT2a, coding respectively for a P1B-type ATPase and a metallothionein, were particularly induced by Pb-exposure in both roots and leaves. The functional characterization of HiHMA4 and HiMT2a was achieved using Arabidopsis T-DNA insertional mutants. Pb content and primary root growth analysis confirmed the role of these two genes in Pb tolerance and accumulation. H. incana could be considered as a good experimental model to identify genes involved in lead tolerance and accumulation in plants.

  14. Lead tolerance and accumulation in Hirschfeldia incana, a Mediterranean Brassicaceae from metalliferous mine spoils.

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    Florence Auguy

    Full Text Available Lead is a heavy metal of particular concern with respect to environmental quality and health. The lack of plant species that accumulate and tolerate Pb is a limiting factor to understand the molecular mechanisms involved in Pb tolerance. In this study we identified Hirschfeldia incana, a Brassicaceae collected from metalliferous mine spoils in Morocco, as a Pb accumulator plant. H. incana exhibited high Pb accumulation in mine soils and in hydroponic cultures. Major Pb accumulation occurred in the roots and a part of Pb translocated from the roots to the shoots, even to the siliques. These findings demonstrated that H. incana is a Pb accumulator species. The expression of several candidate genes after Pb-exposure was measured by quantitative PCR and two of them, HiHMA4 and HiMT2a, coding respectively for a P1B-type ATPase and a metallothionein, were particularly induced by Pb-exposure in both roots and leaves. The functional characterization of HiHMA4 and HiMT2a was achieved using Arabidopsis T-DNA insertional mutants. Pb content and primary root growth analysis confirmed the role of these two genes in Pb tolerance and accumulation. H. incana could be considered as a good experimental model to identify genes involved in lead tolerance and accumulation in plants.

  15. Glucoraphasatin and glucoraphenin, a redox pair of glucosinolates of brassicaceae, differently affect metabolizing enzymes in rats.

    Science.gov (United States)

    Barillari, Jessica; Iori, Renato; Broccoli, Massimiliano; Pozzetti, Laura; Canistro, Donatella; Sapone, Andrea; Bonamassa, Barbara; Biagi, Gian Luigi; Paolini, Moreno

    2007-07-11

    Brassica vegetables are an important dietary source of glucosinolates (GLs), whose breakdown products exhibit anticancer activity. The protective properties of Brassicaceae are believed to be due to the inhibition of Phase-I or induction of Phase-II xenobiotic metabolizing enzymes (XMEs), thus enhancing carcinogen clearance. To study whether GLs affect XMEs and the role of their chemical structure, we focused on two alkylthio GLs differing in the oxidation degree of the side chain sulfur. Male Sprague-Dawley rats were supplemented (per oral somministration by gavage) with either glucoraphasatin (4-methylthio-3-butenyl GL; GRH) or glucoraphenin (4-methylsulfinyl-3-butenyl GL; GRE), at 24 or 120 mg/kg body weight in a single or repeated fashion (daily for four consecutive days), and hepatic microsomes were prepared for XME analyses. Both GLs were able to induce XMEs, showing different induction profiles. While the inductive effect was stronger after multiple administration of the higher GRH dosage, the single lower GRE dose was the most effective in boosting cytochrome P-450 (CYP)-associated monooxygenases and the postoxidative metabolism. CYP3A1/2 were the most affected isoforms by GRH treatment, whereas GRE induced mainly CYP1A2 supported oxidase. Glutathione S-transferase increased up to approximately 3.2-fold after a single (lower) GRE dose and UDP-glucuronosyl transferase up to approximately 2-fold after four consecutive (higher) GRH doses. In conclusion, the induction profile of these GLs we found is not in line with the chemopreventive hypothesis. Furthermore, the oxidation degree of the side chain sulfur of GLs seems to exert a crucial role on XME modulation.

  16. The methionine chain elongation pathway in the biosynthesis of glucosinolates in Eruca sativa (Brassicaceae).

    Science.gov (United States)

    Graser, G; Schneider, B; Oldham, N J; Gershenzon, J

    2000-06-15

    Glucosinolates are nitrogen- and sulfur-containing plant natural products that have become increasingly important in human affairs as flavor precursors, cancer-prevention agents, and crop protectants. While many glucosinolates are biosynthesized from common amino acids, the major glucosinolates in economically important species of the Brassicaceae, such as Brassica napus (oilseed rape), are thought to be formed from chain-elongated derivatives of methionine or phenylalanine. We investigated the chain elongation pathway for methionine that is involved in glucosinolate biosynthesis in Eruca sativa. Isotopically labeled methionine and acetate were administered to cut leaves and the major product, 4-methylthiobutylglucosinolate (isolated as its desulfated derivative), was analyzed by MS and NMR. Administration of ¿U-(13)Cmethionine showed that the entire carbon skeleton of this amino acid, with the exception of the COOH carbon, is incorporated as a unit into 4MTB. Administration of ¿(13)C- and ¿(14)Căcetate gave a labeling pattern consistent with the operation of a three-step chain elongation cycle which begins with the condensation of acetyl-CoA with a 2-oxo acid derived from methionine and ends with an oxidative decarboxylation forming a new 2-oxo acid with one additional methylene group. Administration of ¿(15)Nmethionine provided evidence for the transfer of an amino group to the chain-elongated 2-oxo acid, forming an extended amino acid which serves as a substrate for the remaining steps of glucosinolate biosynthesis. The retention of a high level of (15)N in the products suggests that the amino transfer reactions and the chain elongation cycle are localized in the same subcellular compartment.

  17. One or three species in Megadenia (Brassicaceae): insight from molecular studies.

    Science.gov (United States)

    Artyukova, E V; Kozyrenko, M M; Boltenkov, E V; Gorovoy, P G

    2014-08-01

    Megadenia Maxim. is a small genus of the Brassicaceae endemic to East Asia with three disjunct areas of distribution: the eastern edge of the Qinghai-Tibetan Plateau, the Eastern Sayan Mountains in southern Siberia, and Chandalaz Ridge in the southern Sikhote-Alin Mountains. Although distinct species (M. pygmaea Maxim., M. bardunovii Popov, and M. speluncarum Vorob., Vorosch. and Gorovoj) have been described from each area, they have lately been reduced to synonymy with M. pygmaea due to high morphological similarity. Here, we present the first molecular study of Megadenia. Using the sequences of 11 noncoding regions from the cytoplasmic (chloroplast and mitochondrial) and nuclear genomes, we assessed divergence within the genus and explored the relationships between Megadenia and Biscutella L. Although M. bardunovii, M. speluncarum, and M. pygmaea were found to be indiscernible with regard to the nuclear and mitochondrial markers studied, our data on the plastid genome revealed their distinctness and a clear subdivision of the genus into three lineages matching the three described species. All of the phylogenetic analyses of the chloroplast DNA sequences provide strong support for the inclusion of Megadenia and Biscutella in the tribe Biscutelleae. A dating analysis shows that the genus Megadenia is of Miocene origin and diversification within the genus, which has led to the three extant lineages, most likely occurred during the Early-Middle Pleistocene, in agreement with the vicariance pattern. Given the present-day distribution, differences in habitat preferences and in some anatomical traits, and lack of a direct genealogical relationship, M. pygmaea, M. bardunovii, and M. speluncarum should be treated as distinct species or at least subspecies.

  18. Comparison of five major trichome regulatory genes in Brassica villosa with orthologues within the Brassicaceae.

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    Naghabushana K Nayidu

    Full Text Available Coding sequences for major trichome regulatory genes, including the positive regulators GLABRA 1(GL1, GLABRA 2 (GL2, ENHANCER OF GLABRA 3 (EGL3, and TRANSPARENT TESTA GLABRA 1 (TTG1 and the negative regulator TRIPTYCHON (TRY, were cloned from wild Brassica villosa, which is characterized by dense trichome coverage over most of the plant. Transcript (FPKM levels from RNA sequencing indicated much higher expression of the GL2 and TTG1 regulatory genes in B. villosa leaves compared with expression levels of GL1 and EGL3 genes in either B. villosa or the reference genome species, glabrous B. oleracea; however, cotyledon TTG1 expression was high in both species. RNA sequencing and Q-PCR also revealed an unusual expression pattern for the negative regulators TRY and CPC, which were much more highly expressed in trichome-rich B. villosa leaves than in glabrous B. oleracea leaves and in glabrous cotyledons from both species. The B. villosa TRY expression pattern also contrasted with TRY expression patterns in two diploid Brassica species, and with the Arabidopsis model for expression of negative regulators of trichome development. Further unique sequence polymorphisms, protein characteristics, and gene evolution studies highlighted specific amino acids in GL1 and GL2 coding sequences that distinguished glabrous species from hairy species and several variants that were specific for each B. villosa gene. Positive selection was observed for GL1 between hairy and non-hairy plants, and as expected the origin of the four expressed positive trichome regulatory genes in B. villosa was predicted to be from B. oleracea. In particular the unpredicted expression patterns for TRY and CPC in B. villosa suggest additional characterization is needed to determine the function of the expanded families of trichome regulatory genes in more complex polyploid species within the Brassicaceae.

  19. Phytochemicals of Brassicaceae in plant protection and human health--influences of climate, environment and agronomic practice.

    Science.gov (United States)

    Björkman, Maria; Klingen, Ingeborg; Birch, Andrew N E; Bones, Atle M; Bruce, Toby J A; Johansen, Tor J; Meadow, Richard; Mølmann, Jørgen; Seljåsen, Randi; Smart, Lesley E; Stewart, Derek

    2011-05-01

    In this review, we provide an overview of the role of glucosinolates and other phytochemical compounds present in the Brassicaceae in relation to plant protection and human health. Current knowledge of the factors that influence phytochemical content and profile in the Brassicaceae is also summarized and multi-factorial approaches are briefly discussed. Variation in agronomic conditions (plant species, cultivar, developmental stage, plant organ, plant competition, fertilization, pH), season, climatic factors, water availability, light (intensity, quality, duration) and CO(2) are known to significantly affect content and profile of phytochemicals. Phytochemicals such as the glucosinolates and leaf surface waxes play an important role in interactions with pests and pathogens. Factors that affect production of phytochemicals are important when designing plant protection strategies that exploit these compounds to minimize crop damage caused by plant pests and pathogens. Brassicaceous plants are consumed increasingly for possible health benefits, for example, glucosinolate-derived effects on degenerative diseases such as cancer, cardiovascular and neurodegenerative diseases. Thus, factors influencing phytochemical content and profile in the production of brassicaceous plants are worth considering both for plant and human health. Even though it is known that factors that influence phytochemical content and profile may interact, studies of plant compounds were, until recently, restricted by methods allowing only a reductionistic approach. It is now possible to design multi-factorial experiments that simulate their combined effects. This will provide important information to ecologists, plant breeders and agronomists.

  20. The ARC1 E3 ligase gene is frequently deleted in self-compatible Brassicaceae species and has a conserved role in Arabidopsis lyrata self-pollen rejection.

    Science.gov (United States)

    Indriolo, Emily; Tharmapalan, Pirashaanthy; Wright, Stephen I; Goring, Daphne R

    2012-11-01

    Self-pollen rejection is an important reproductive regulator in flowering plants, and several different intercellular signaling systems have evolved to elicit this response. In the Brassicaceae, the self-incompatibility system is mediated by the pollen S-locus Cys-Rich/S-locus Protein11 (SCR/SP11) ligand and the pistil S Receptor Kinase (SRK). While the SCR/SP11-SRK recognition system has been identified in several species across the Brassicaceae, less is known about the conservation of the SRK-activated cellular responses in the stigma, following self-pollen contact. The ARM Repeat Containing1 (ARC1) E3 ubiquitin ligase functions downstream of SRK for the self-incompatibility response in Brassica, but it has been suggested that ARC1 is not required in Arabidopsis species. Here, we surveyed the presence of ARC1 orthologs in several recently sequenced genomes from Brassicaceae species that had diversified ∼20 to 40 million years ago. Surprisingly, the ARC1 gene was deleted in several species that had lost the self-incompatibility trait, suggesting that ARC1 may lose functionality in the transition to self-mating. To test the requirement of ARC1 in a self-incompatible Arabidopsis species, transgenic ARC1 RNA interference Arabidopsis lyrata plants were generated, and they exhibited reduced self-incompatibility responses resulting in successful fertilization. Thus, this study demonstrates a conserved role for ARC1 in the self-pollen rejection response within the Brassicaceae.

  1. Herbicidal activity of Brassicaceae seed meal on wild oat (Avena fatua), Italian ryegrass (Lolium multiflorum Lam.), redroot pigweed (Amaranthus retroflexus L.) and prickly lettuce (Lactuca serriola)

    Science.gov (United States)

    There is an on-going need for the development of sustainable methods of weed control in crop production systems. Studies were conducted to evaluate the efficacy of different Brassicaceae seed meals and application rates on the emergence of several weed species including wild oat, Italian rye grass, ...

  2. Intrinsic stability of Brassicaceae plasma membrane in relation to changes in proteins and lipids as a response to salinity.

    Science.gov (United States)

    Chalbi, Najla; Martínez-Ballesta, Ma Carmen; Youssef, Nabil Ben; Carvajal, Micaela

    2015-03-01

    Changes in plasma membrane lipids, such as sterols and fatty acids, have been observed as a result of salt stress. These alterations, together with modification of the plasma membrane protein profile, confer changes in the physical properties of the membrane to be taken into account for biotechnological uses. In our experiments, the relationship between lipids and proteins in three different Brassicaceae species differing in salinity tolerance (Brassica oleracea, B. napus and Cakile maritima) and the final plasma membrane stability were studied. The observed changes in the sterol (mainly an increase in sitosterol) and fatty acid composition (increase in RUFA) in each species led to physical adaptation of the plasma membrane to salt stress. The in vitro vesicles stability was higher in the less tolerant (B. oleracea) plants together with low lipoxygenase activity. These results indicate that the proteins/lipids ratio and lipid composition is an important aspect to take into account for the use of natural vesicles in plant biotechnology.

  3. Aroma compound analysis of Eruca sativa (Brassicaceae) SPME headspace leaf samples using GC, GC-MS, and olfactometry.

    Science.gov (United States)

    Jirovetz, Leopold; Smith, David; Buchbauer, Gerhard

    2002-07-31

    The aroma compounds of rocket salad (Eruca sativa) SPME headspace samples of fresh leaves were analyzed using GC, GC-MS, and olfactometry. More than 50 constituents of the Eruca headspace could be identified to be essential volatiles, responsible for the characteristic intense green; herbal; nutty and almond-like; Brassicaceae-like (direction of cabbage, broccoli, and mustard); and horseradish-like aroma of these salad leaves. As aroma impact compounds, especially isothiocyanates, and derivatives of butane, hexane, octane, and nonane were identified. 4-Methylthiobutyl isothiocyanate (14.2%), cis-3-hexen-1-ol (11.0%), cis-3-hexenyl butanoate (10.8%), 5-methylthiopentyl isothiocyanate (9.3%), cis-3-hexenyl 2-methylbutanoate (5.4%), and 5-methylthiopentanenitrile (5.0%) were found in concentrations higher than 5.0% (calculated as % peak area of GC analysis using a nonpolar column).

  4. Arsenic absorption by members of the Brassicacea family, analysed by neutron activation, k{sub 0}-method - preliminary results

    Energy Technology Data Exchange (ETDEWEB)

    Uemura, George; Matos, Ludmila Vieira da Silva; Silva, Maria Aparecida da; Ferreira, Alexandre Santos Martorano; Menezes, Maria Angela de Barros Correia [Centro de Desenvolvimento da Tecnologia Nuclear (CDTN-CNEN/MG), Belo Horizonte, MG (Brazil)], e-mail: george@cdtn.br, e-mail: menezes@cdtn.br

    2009-07-01

    Natural arsenic contamination is a cause for concern in many countries of the world including Argentina, Bangladesh, Chile, China, India, Mexico, Thailand and the United States of America and also in Brazil, specially in the Iron Quadrangle area, where mining activities has been contributing to aggravate natural contamination. Brassicacea is a plant family with edible species (arugula, cabbage, cauliflower, cress, kale, mustard, radish), ornamental ones (alysssum, field pennycress, ornamental cabbages and kales) and some species are known as metal and metalloid accumulators (Indian mustard, field pennycress), like chromium, nickel, and arsenic. The present work aimed at studying other taxa of the Brassicaceae family to verify their capability in absorbing arsenic, under controlled conditions, for possible utilisation in remediation activities. The analytical method chosen was neutron activation analysis, k{sub 0} method, a routine technique at CDTN, and also very appropriate for arsenic studies. To avoid possible interference from solid substrates, like sand or vermiculite, attempts were carried out to keep the specimens in 1/4 Murashige and Skoog basal salt solution (M and S). Growth was stumped, plants withered and perished, showing that modifications in M and S had to be done. The addition of nickel and silicon allowed normal growth of the plant specimens, for periods longer than usually achieved (more than two months); yielding samples large enough for further studies with other techniques, like ICP-MS, and other targets, like speciation studies. The results of arsenic absorption are presented here and the need of nickel and silicon in the composition of M and S is discussed. (author)

  5. Evolutionary Migration of the Disjunct Salt Cress Eutrema salsugineum (= Thellungiella salsuginea, Brassicaceae between Asia and North America.

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    Xiao-Juan Wang

    Full Text Available Eutrema salsugineum (= Thellungiella salsuginea Brassicaceae, a species growing in highly saline habitats, is a good model for use in salt-stress research. However, its evolutionary migrations and genetic variations within and between disjunct regions from central Asia to northern China and North America remain largely unknown. We examined genetic variations and phylogeographic patterns of this species by sequencing ITS, 9 chloroplast (cp DNA fragments (4379 bp and 10 unlinked nuclear loci (6510 bp of 24 populations across its distributional range. All markers suggested the high genetic poverty of this species and the limited number of genetic variations recovered was congruently partitioned between central Asia, northern China and North America. Further modelling of nuclear population-genetic data based on approximate bayesian computation (ABC analyses indicated that the long-distance dispersals after the recent origin of E. salsugineum may have occurred from central Asia to the other two regions respectively within 20000 years. The fast demographic expansions should have occurred in northern China in a more recent past. Our study highlights the importance of using ABC analyses and nuclear population genetic data to trace evolutionary migrations of the disjunct distributions of the plants in the recent past.

  6. Dendrochronological study of the endangered shrub Vella pseudocytisus subsp. paui (Brassicaceae: implications for its recovery and conservation

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    Génova, Mar

    2013-12-01

    Full Text Available Dendrochronology is useful to determine plant longevity, to provide insights into the structure and dynamics of plant populations and to study the relationships between growth and environmental determinants. The dendrochronology of endangered shrubs is unexplored, although their use represents an opportunity to produce better conservation guidelines. We collected for this study 63 samples from already dead specimens of Vella pseudocytisus subsp. paui (Brassicaceae, an endangered Spanish endemism from three localities. We analyzed the relationship between ring data and plant size to determine the accuracy of using size as a proxy for plant age. We also explored the relationships between ring data and environmental variables to detect growth determinants. This shrub showed a high longevity as older individuals presented nearly 50 growth rings. The relationship between age and size is weak although it could be established based on the logarithmic function of plant biovolume. Significant relationships were found between rainfall and ring widths, showing that water limited annual growth. Finally, age structure characterized differences among populations, highlighting the effects of disturbance and land use. These results provided new opportunities for management within the ongoing recovery plan for the species.La dendrocronología es útil para determinar la longevidad de la planta, proporcionar información sobre la estructura y dinámica de las poblaciones vegetales y estudiar las relaciones entre el crecimiento y las variables ambientales. Hasta ahora no se había hecho uso de la dendrocronología en arbustos en peligro de extinción, aunque su empleo puede mejorar las directrices de conservación. En este estudio se han recolectado 63 especímenes ya muertos de tres localidades de Vella pseudocytisus subsp. paui (Brassicaceae, un endemismo español en peligro de extinción. Se han analizado las relaciones entre los grosores del anillo de

  7. Molecular evidence for bicontinental hybridogenous genomic constitution in Lepidium sensu stricto (Brassicaceae) species from Australia and New Zealand.

    Science.gov (United States)

    Mummenhoff, Klaus; Linder, Peter; Friesen, Nikolai; Bowman, John L; Lee, Ji-Young; Franzke, Andreas

    2004-02-01

    Lepidium sensu stricto (s.s.) (Brassicaceae) (ca. 150 species) is distributed worldwide with endemic species on every continent. It is represented in Australia and New Zealand by 19 and seven native species, respectively. In the present study we used a nuclear ribosomal internal transcribed spacer (ITS) phylogeny in comparison with a cpDNA phylogeny to unravel the origin of Australian/New Zealand species. Although phylogenetic relationships within Lepidium s.s. were not fully resolved, the cpDNA data were in agreement with a Californian origin of Lepidium species from Australia/New Zealand. Strongly conflicting signals between the cp- and nuclear DNA phylogenetic analysis clearly indicated hybridogenous genomic constitution of Australian Lepidium s.s. species: All 18 studied Australian/New Zealand Lepidium s.s. species examined shared a Californian cpDNA type. While eleven Australian/New Zealand species appeared to harbor a Californian ITS type, a group of seven species shared a South African ITS type. This pattern is most likely explained by two trans-oceanic dispersals of Lepidium from California and Africa to Australia/New Zealand and subsequent hybridization followed by homogenization of the ribosomal DNA either to the Californian or South African ITS type in the two different lineages. Calibration of our molecular trees indicates a Pliocene/Pleistocene origin of Lepidium in Australia/New Zealand. Low levels of cpDNA and ITS sequence divergence and unresolved topologies within Australian/New Zealand species suggest a rapid and recent radiation of Lepidium after the hybridization event. This coincides with dramatic climatic changes in that geological epoch shaping the composition of the vegetation.

  8. Plant Size as Determinant of Species Richness of Herbivores, Natural Enemies and Pollinators across 21 Brassicaceae Species.

    Directory of Open Access Journals (Sweden)

    Hella Schlinkert

    Full Text Available Large plants are often more conspicuous and more attractive for associated animals than small plants, e.g. due to their wider range of resources. Therefore, plant size can positively affect species richness of associated animals, as shown for single groups of herbivores, but studies usually consider intraspecific size differences of plants in unstandardised environments. As comprehensive tests of interspecific plant size differences under standardised conditions are missing so far, we investigated effects of plant size on species richness of all associated arthropods using a common garden experiment with 21 Brassicaceae species covering a broad interspecific plant size gradient from 10 to 130 cm height. We recorded plant associated ecto- and endophagous herbivores, their natural enemies and pollinators on and in each aboveground plant organ, i.e. flowers, fruits, leaves and stems. Plant size (measured as height from the ground, the number of different plant organ entities and their biomass were assessed. Increasing plant size led to increased species richness of associated herbivores, natural enemies and pollinating insects. This pattern was found for ectophagous and endophagous herbivores, their natural enemies, as well as for herbivores associated with leaves and fruits and their natural enemies, independently of the additional positive effects of resource availability (i.e. organ biomass or number of entities and, regarding natural enemies, herbivore species richness. We found a lower R2 for pollinators compared to herbivores and natural enemies, probably caused by the high importance of flower characteristics for pollinator species richness besides plant size. Overall, the increase in plant height from 10 to 130 cm led to a 2.7-fold increase in predicted total arthropod species richness. In conclusion, plant size is a comprehensive driver of species richness of the plant associated arthropods, including pollinators, herbivores and their

  9. Plant Size as Determinant of Species Richness of Herbivores, Natural Enemies and Pollinators across 21 Brassicaceae Species.

    Science.gov (United States)

    Schlinkert, Hella; Westphal, Catrin; Clough, Yann; László, Zoltán; Ludwig, Martin; Tscharntke, Teja

    2015-01-01

    Large plants are often more conspicuous and more attractive for associated animals than small plants, e.g. due to their wider range of resources. Therefore, plant size can positively affect species richness of associated animals, as shown for single groups of herbivores, but studies usually consider intraspecific size differences of plants in unstandardised environments. As comprehensive tests of interspecific plant size differences under standardised conditions are missing so far, we investigated effects of plant size on species richness of all associated arthropods using a common garden experiment with 21 Brassicaceae species covering a broad interspecific plant size gradient from 10 to 130 cm height. We recorded plant associated ecto- and endophagous herbivores, their natural enemies and pollinators on and in each aboveground plant organ, i.e. flowers, fruits, leaves and stems. Plant size (measured as height from the ground), the number of different plant organ entities and their biomass were assessed. Increasing plant size led to increased species richness of associated herbivores, natural enemies and pollinating insects. This pattern was found for ectophagous and endophagous herbivores, their natural enemies, as well as for herbivores associated with leaves and fruits and their natural enemies, independently of the additional positive effects of resource availability (i.e. organ biomass or number of entities and, regarding natural enemies, herbivore species richness). We found a lower R2 for pollinators compared to herbivores and natural enemies, probably caused by the high importance of flower characteristics for pollinator species richness besides plant size. Overall, the increase in plant height from 10 to 130 cm led to a 2.7-fold increase in predicted total arthropod species richness. In conclusion, plant size is a comprehensive driver of species richness of the plant associated arthropods, including pollinators, herbivores and their natural enemies

  10. Plasticity in functional traits in the context of climate change: a case study of the subalpine forb Boechera stricta (Brassicaceae).

    Science.gov (United States)

    Anderson, Jill T; Gezon, Zachariah J

    2015-04-01

    Environmental variation often induces shifts in functional traits, yet we know little about whether plasticity will reduce extinction risks under climate change. As climate change proceeds, phenotypic plasticity could enable species with limited dispersal capacity to persist in situ, and migrating populations of other species to establish in new sites at higher elevations or latitudes. Alternatively, climate change could induce maladaptive plasticity, reducing fitness, and potentially stalling adaptation and migration. Here, we quantified plasticity in life history, foliar morphology, and ecophysiology in Boechera stricta (Brassicaceae), a perennial forb native to the Rocky Mountains. In this region, warming winters are reducing snowpack and warming springs are advancing the timing of snow melt. We hypothesized that traits that were historically advantageous in hot and dry, low-elevation locations will be favored at higher elevation sites due to climate change. To test this hypothesis, we quantified trait variation in natural populations across an elevational gradient. We then estimated plasticity and genetic variation in common gardens at two elevations. Finally, we tested whether climatic manipulations induce plasticity, with the prediction that plants exposed to early snow removal would resemble individuals from lower elevation populations. In natural populations, foliar morphology and ecophysiology varied with elevation in the predicted directions. In the common gardens, trait plasticity was generally concordant with phenotypic clines from the natural populations. Experimental snow removal advanced flowering phenology by 7 days, which is similar in magnitude to flowering time shifts over 2-3 decades of climate change. Therefore, snow manipulations in this system can be used to predict eco-evolutionary responses to global change. Snow removal also altered foliar morphology, but in unexpected ways. Extensive plasticity could buffer against immediate fitness

  11. Determination of S-methyl-L-methionine (SMM) from Brassicaceae Family Vegetables and Characterization of the Intestinal Transport of SMM by Caco-2 Cells.

    Science.gov (United States)

    Song, Ji-Hoon; Lee, Hae-Rim; Shim, Soon-Mi

    2017-01-01

    The objectives of the current study were to determine S-methyl-L-methionine (SMM) from various Brassicaceae family vegetables by using validated analytical method and to characterize the intestinal transport mechanism of SMM by the Caco-2 cells. The SMM is well known to provide therapeutic activity in peptic ulcers. The amount of SMM from various Brassicaceae family vegetables ranged from 89.08 ± 1.68 μg/g to 535.98 ± 4.85 μg/g of dry weight by using validated ultra-performance liquid chromatography-electrospray ionization-mass spectrometry method. For elucidating intestinal transport mechanism, the cells were incubated with or without transport inhibitors, energy source, or a metabolic inhibitor. Phloridzin and verapamil as inhibitors of sodium glucose transport protein (SGLT1) and P-glycoprotein, respectively, were not responsible for cellular uptake of SMM. Glucose and sodium azide were not affected by the cellular accumulation of SMM. The efflux ratio of SMM was 0.26, implying that it is not effluxed through Caco-2 cells. The apparent coefficient permeability (Papp ) of SMM was 4.69 × 10(-5) cm/s, indicating that it will show good oral absorption in in vivo.

  12. Using headspace solid-phase microextraction for comparison of volatile sulphur compounds of fresh plants belonging to families Alliaceae and Brassicaceae.

    Science.gov (United States)

    Kremr, Daniel; Bajerová, Petra; Bajer, Tomáš; Eisner, Aleš; Adam, Martin; Ventura, Karel

    2015-09-01

    In this study, an optimisation of extraction of sulphur volatile compounds (SVCs) has been performed using Central Composite Design. The conditions of the highest amount of eluated peaks and total peaks area have been treated. Factors such as coating of fiber for SPME (Solid Phase Microextraction), extraction temperature and extraction time have been optimised. The SVCs have shown the optimal extraction using a DVB/CAR/PDMS (divinylbenzene/carboxen/polydimethylsiloxane) fiber at 73 °C during 50 min. Furthermore, a pre-incubation step lasting 20 min at the extraction temperature has been used. In total, 12 samples have been investigated at the mentioned optimal conditions, eight from the Alliaceae and four from the Brassicaceae family. The highest number of SVCs (24) has been identified in the sample of chive. The most frequently identified compound found in 11 of 12 samples has been dimethyl trisulphide.

  13. Comparative Analysis of Growth, Genome Size, Chromosome Numbers and Phylogeny of Arabidopsis thaliana and Three Cooccurring Species of the Brassicaceae from Uzbekistan

    Directory of Open Access Journals (Sweden)

    Matthias H. Hoffmann

    2010-01-01

    Full Text Available Contrary to literature data Arabidopsis thaliana was rarely observed in Middle Asia during a collection trip in 2001. Instead, three other Brassicaceae species were frequently found at places where A. thaliana was expected. To reveal reasons for this frequency pattern, we studied chromosome numbers, genome sizes, phylogenetic relationships, developmental rates, and reproductive success of A. thaliana, Olimarabidopsis pumila, Arabis montbretiana, and Arabis auriculata from Uzbekistan in two temperature treatments. There are little but partially significant differences between phenotypes. All studied species have very small genomes. The 1Cx-values of different genotypes within the sampled species are correlated with altitude. Developmental rates are also correlated with 1Cx-values. In our growth experiments, Arabidopsis had high seed sterility at higher temperature, which might be one reason for the rarity of A. thaliana in Middle Asia.

  14. Evidence that an evolutionary transition from dehiscent to indehiscent fruits in Lepidium (Brassicaceae) was caused by a change in the control of valve margin identity genes.

    Science.gov (United States)

    Mühlhausen, Andreas; Lenser, Teresa; Mummenhoff, Klaus; Theißen, Günter

    2013-03-01

    In the Brassicaceae, indehiscent fruits evolved from dehiscent fruits several times independently. Here we use closely related wild species of the genus Lepidium as a model system to analyse the underlying developmental genetic mechanisms in a candidate gene approach. ALCATRAZ (ALC), INDEHISCENT (IND), SHATTERPROOF1 (SHP1) and SHATTERPROOF2 (SHP2) are known fruit developmental genes of Arabidopsis thaliana that are expressed in the fruit valve margin governing dehiscence zone formation. Comparative expression analysis by quantitative RT-PCR, Northern blot and in situ hybridization show that their orthologues from Lepidium campestre (dehiscent fruits) are similarly expressed at valve margins. In sharp contrast, expression of the respective orthologues is abolished in the corresponding tissue of indehiscent Lepidium appelianum fruits, indicating that changes in the genetic pathway identified in A. thaliana caused the transition from dehiscent to indehiscent fruits in the investigated species. As parallel mutations in different genes are quite unlikely, we conclude that the changes in gene expression patterns are probably caused by changes in upstream regulators of ALC, IND and SHP1/2, possible candidates from A. thaliana being FRUITFULL (FUL), REPLUMLESS (RPL) and APETALA2 (AP2). However, neither expression analyses nor functional tests in transgenic plants provided any evidence that the FUL or RPL orthologues of Lepidium were involved in evolution of fruit indehiscence in Lepidium. In contrast, stronger expression of AP2 in indehiscent compared to dehiscent fruits identifies AP2 as a candidate gene that deserves further investigation.

  15. Seed Germination Ecology of the Cold Desert Annual Isatis violascens (Brassicaceae): Two Levels of Physiological Dormancy and Role of the Pericarp.

    Science.gov (United States)

    Zhou, Yuan M; Lu, Juan J; Tan, Dun Y; Baskin, Carol C; Baskin, Jerry M

    2015-01-01

    The occurrence of various species of Brassicaceae with indehiscent fruits in the cold deserts of NW China suggests that there are adaptive advantages of this trait. We hypothesized that the pericarp of the single-seeded silicles of Isatis violascens restricts embryo expansion and thus prevents germination for 1 or more years. Thus, our aim was to investigate the role of the pericarp in seed dormancy and germination of this species. The effects of afterripening, treatment with gibberellic acid (GA3) and cold stratification on seed dormancy-break were tested using intact silicles and isolated seeds, and germination phenology was monitored in an experimental garden. The pericarp has a role in mechanically inhibiting germination of fresh seeds and promotes germination of nondormant seeds, but it does not facilitate formation of a persistent seed bank. Seeds in silicles in watered soil began to germinate earlier in autumn and germinated to higher percentages than isolated seeds. Sixty-two percent of seeds in the buried silicles germinated by the end of the first spring, and only 3% remained nongerminated and viable. Twenty to twenty-five percent of the seeds have nondeep physiological dormancy (PD) and 75-80% intermediate PD. Seeds with nondeep PD afterripen in summer and germinate inside the silicles in autumn if the soil is moist. Afterripening during summer significantly decreased the amount of cold stratification required to break intermediate PD. The presence of both nondeep and intermediate PD in the seed cohort may be a bet-hedging strategy.

  16. Role of cadmium and ultraviolet-B radiation in plants. Influence on photosynthesis and element content in two species of Brassicaceae

    Energy Technology Data Exchange (ETDEWEB)

    Larsson Joensson, Helene

    2001-02-01

    Plants are exposed to many different stress factors during their lifetime. often more than one factor at a time. which highlights the importance of research regarding interaction among stress factors. Cadmium and ultraviolet-B radiation (MB, 280-315 mm) are two potential stress factors in the environment, which have gained increased interest due to atmospheric pollution. In this work the interaction between Cd and UV-B radiation was investigated in two species of Brassicaceae; Brassica napus and Arabidopsis thaliana, the latter including the wild type and phytochelatin-deficient cad1-3. In both species photosynthetic parameters and element content were studied after the plants were exposed to Cd and supplemental UV-B radiation for 14 days. A separate Cd uptake study was carried out on Arabidopsis thaliana to investigate the effect of different Cd pretreatments on Cd uptake. The experiments showed that Cd was the dominant factor, but in Brassica napus, Cd+UV-B showed some interaction effects on energy dissipation and chlorophyll ratios. Generally, Cd decreased the chlorophyll content and influenced photosynthesis by altering oxygen evolution, non-photochemical quenching and the quantum yield. Cadmium had large effects on the content of essential elements, particularly in roots, that may be due to competition during uptake. The Cd uptake study showed that the wild type contained much higher amounts of Cd than the phytochelatin-deficient cad1-3, although Cd uptake is expected to be independent of phytochelatin content. Phytochelatins chelate and transport Cd to the vacuole, thus removing Cd from the cytosol. This compartmentation may disrupt a possible feedback mechanism in the cytosol.

  17. Molecular phylogeny of Solms-laubachia (Brassicaceae) s.l., based on multiple nuclear and plastid DNA sequences, and its biogeographic implications

    Institute of Scientific and Technical Information of China (English)

    Ji-Pei YUE; Hang SUN; David A. BAUM; Jian-Hua LI; Ihsan A. AL-SHEHBAZ; Richard REE

    2009-01-01

    The Hengduan Mountains region of south-west China is a noted biodiversity,hotspot, but the geographic origins and historical assembly of its rich endemic flora, including the sky-island species of Solms-laubachia Muschl. (Brassicaceae), have been little studied. Previous molecular studies on the phylogeny of Solms-laubachia showed it to be paraphyletic, leading to considerable expansion not only of its taxonomic limits, but also its geographic range, with the inclusion of taxa from outside the Hengduan region. However, these studies provided little resolution of interspecific relationships, preventing inferences about historical biogeography within the clade. In the present study, new sequence data from two nuclear genes (LEAFY and G3pdh) and two chloroplast intergenic spacers (petN-psbM and psbM-trnD) were combined with existing markers to increase phylogenetic signals. Phaeonychium villosum (Maxim.) Al-Shehbaz was found to be nested within Solms-laubachia s.l. In general, phylogenetic relationships appear to be a good predictor of geography, with the Hengduan Mountain endemics embedded in a paraphyletic grade of species from the western Himalayas and central Asia, but they also imply morphological homoplasy. Incongruence was detected between the nuclear and chloroplast gene trees, perhaps resulting from incomplete lineage sorting of ancestral polymorphisms. The crown age of Solms-laubachia s.l. was estimated to be approximately 1.42-3.68 mya, using Bayesian relaxed molecular clock analysis. Historical biogeographic analysis using a parametric dispersal-extinction-cladogenesis model inferred central Asia and the western Himalayas as most probable ancestral range of Solms-laubachia s.l., and estimated higher rates of eastward expansion than westward during the diversification of descendant lineages. In summary, our results suggest that Solms-laubachia s.l. originated during the Pliocene in central Asia, and subsequently migrated eastward into the Hengduan Mountains

  18. 磁处理水对两种十字花科植物种子发芽生长的影响%Effect of Magnetic Field Treated Water on the Germination and Growth of the Seeds of Brassicaceae

    Institute of Scientific and Technical Information of China (English)

    谢婕; 吴映明

    2011-01-01

    为了观察磁处理水培养液对2种十字花科植物莱菔与白芥种子发芽生长的影响,使用不同强度的磁处理水培养液对莱菔种子和白芥种子进行处理,设置对照组,7d统计发芽率、根长、根重,测相对电导率.结果表明:0.08T、0.10T强度磁处理水培养液处理的莱菔子与白芥子发芽和根生长情况均好于对照组(P<0.05),0.08T、0.10T磁处理水培养液处理的两种幼株的电导率均低于对照组,说明磁处理水培养液对两种十字花科植物莱菔与白芥种子发芽生长有影响,其生长情况与磁场强度有关.%Different intensities of magnetic field treated water were used to treat the seeds of Raphnaus satirus L. and Sinapis alba L. Boissier, so as to observe the effects of different intensities of the magnetic field treated water on germination and growth of the seeds of Brassicaceae. A control group (CK) was set up. Statistics were made on germination rate, root length and root weight in the seventh day, and the relative electrical conductivity was tested. The results showed that the germination and root growth of Raphnaus satirus L. and Sinapis alba L. Boissier treated by 0.08T and 0.10T magnetic field treated water were better than the CK (P<0.05). And, the relative electrical conductivities of the seedlings treated by 0.08T and 0.10T magnetic field treated water were lower than the CK, indicating that magnetic field treated water had definite effect on the germination and growth of the seeds of Brassicaceae, whose growth was related to the density of magnetism.

  19. New Lepidium (Brassicaceae from New Zealand

    Directory of Open Access Journals (Sweden)

    Peter de Lange

    2013-06-01

    Full Text Available A revision of the New Zealand endemic Lepidium oleraceum and allied species is presented. Sixteen species are recognised, 10 of these are new. The new species are segregated on the basis of morphological characters supported by molecular data obtained from three DNA markers (two rDNA and one cpDNA. One species, L. castellanum sp. nov., is endemic to the Kermadec Islands where it is sympatric with L. oleraceum. The North Island of New Zealand supports four species, with two of them, L. amissum sp. nov. and L. obtusatum, now extinct. The South Island supports six species, that, aside from L. banksii, L. flexicaule and L. oleraceum, are all confined to the south-eastern half of the island (L. aegrum sp. nov., L. crassum sp. nov. and L. juvencum sp. nov.. One of these, L. juvencum sp. nov., extends to Stewart Island. The Chatham Islands support six species (L. flexicaule, L. oblitum sp. nov., L. oleraceum, L. oligodontum sp. nov., L. panniforme sp. nov., and L. rekohuense sp. nov., one of which, L. oligodontum sp. nov., extends to the Antipodes Islands group. The remote, subantarctic Bounty Islands group supports one endemic, L. seditiosum sp. nov., which is the only vascular plant to be recorded from there. Lepidium limenophylax sp. nov. is known from islands off the south-western side of Stewart Island/Rakiura, The Snares and Auckland islands. Lepidium naufragorum, although not related to L. oleraceum and its allies, is also treated because populations with entire leaves are now known. Typification is undertaken for L. banksii, L. oleraceum, L. oleraceum var. acutidentatum, var. frondosum and var. serrulatum.

  20. Reproduction during spaceflight by plants in the family Brassicaceae

    Science.gov (United States)

    Musgrave, M. E.; Kuang, A.

    2001-01-01

    Researchers report on studies of reproduction in Arabidopsis thaliana in space during during the Chromex-03 on STS-54, Chromex-04 on STS-51, and Chromex-05 on STS-68 missions. The obstacles to seed formation were related to carbon dioxide levels. Other experiments examined in flight pollination and seed production in Brassica rapa during parabolic flight, a 4-1/2 month stay on Mir, and on STS-87. During the Mir experiment, Brassica seeds were harvested from seeds sown in flight. The second generation seeds grew to produce new seeds that contained more starch and less protein and lipid when compared to ground control seeds.

  1. Brassicaceae endémicas del Perú

    Directory of Open Access Journals (Sweden)

    Christhian Monsalve

    2013-10-01

    Full Text Available The Brasicaceae are represented in Peru by 27 genera and 111 species (Brako & Zarucchi, 1993; Ulloa Ulloa et al., 2004, mostly herbs. Here we recognize 34 endemic taxa in 12 genera. Two genera, Catadysia and Dactylocardamum, are also endemic to Peru. These endemic taxa are found mainly in the Very Humid and Dry Puna, and High-Andean regions, growing above 3000 m elevation. We applied IUCN categories and criteria to 31 endemic taxa. Six endemic species are known from the Peruvian park system.

  2. Stress response and health affecting compounds in Brassicaceae

    NARCIS (Netherlands)

    Jahangir, Muhammad

    2010-01-01

    Summary of the Thesis: Vegetables have always been considered as healthy food. So also Brassica vegetables are well known all over the world as a common food due to the presence of health affecting compounds (Chapter 2). A vast amount of data is available for health promoting compounds in Brassicace

  3. Sisymbrium volgense (Brassicaceae in the flora of Romania

    Directory of Open Access Journals (Sweden)

    Adrian OPREA

    2010-11-01

    Full Text Available Sisymbrium volgense M. Bieb. ex E. Fourn., native from South-Western Russia, is reported in the flora of Romania. This species was found in the area of the Socola railway station, in the East of Iasi city (North-Eastern Romania. The description and general distribution of the species, as well as some data relating to its biology, ecology and phytosociology are given in the paper. An identification key for this species and other related taxa from the flora of Romania is provided.

  4. Interspecific and interploidal gene flow in Central European Arabidopsis (Brassicaceae

    Directory of Open Access Journals (Sweden)

    Jørgensen Marte H

    2011-11-01

    Full Text Available Abstract Background Effects of polyploidisation on gene flow between natural populations are little known. Central European diploid and tetraploid populations of Arabidopsis arenosa and A. lyrata are here used to study interspecific and interploidal gene flow, using a combination of nuclear and plastid markers. Results Ploidal levels were confirmed by flow cytometry. Network analyses clearly separated diploids according to species. Tetraploids and diploids were highly intermingled within species, and some tetraploids intermingled with the other species, as well. Isolation with migration analyses suggested interspecific introgression from tetraploid A. arenosa to tetraploid A. lyrata and vice versa, and some interploidal gene flow, which was unidirectional from diploid to tetraploid in A. arenosa and bidirectional in A. lyrata. Conclusions Interspecific genetic isolation at diploid level combined with introgression at tetraploid level indicates that polyploidy may buffer against negative consequences of interspecific hybridisation. The role of introgression in polyploid systems may, however, differ between plant species, and even within the small genus Arabidopsis, we find very different evolutionary fates when it comes to introgression.

  5. 7 CFR 201.56-3 - Mustard family, Brassicaceae (Cruciferae).

    Science.gov (United States)

    2010-01-01

    ...) Germination habit: Epigeal dicot. (2) Food reserves: Cotyledons which expand and become thin, leaf-like and... above the soil surface; the epicotyl usually does not show any development within the test period....

  6. Genetic diversity in diploid vs. tetraploid Rorippa amphibia (Brassicaceae)

    NARCIS (Netherlands)

    Luttikhuizen, P.C.; Stift, M.; Kuperus, P.; van Tienderen, P.H.

    2007-01-01

    The frequency of polyploidy increases with latitude in the Northern Hemisphere, especially in deglaciated, recently colonized areas. The cause or causes of this pattern are largely unknown, but a greater genetic diversity of individual polyploid plants due to a doubled genome and/or a hybrid origin

  7. A new species of Hesperis (Brassicaceae) from SW Anatolia, Turkey

    DEFF Research Database (Denmark)

    Parolly, G.; Tan, Kit

    2006-01-01

    Hesperis kuerschneri, from the vilayet of Denizli in the Western Taurus is described as a species new to science and illustrated. Its affinities are with H. theophrasti, which has several infraspecific taxa in the Balkans and Anatolia. The new species occurs on steep serpentine scree slopes...... together with other serpentine plants of the Western Taurus and is rather local in distribution....

  8. 十字花科58属94种野生植物种子脂肪酸组分分析%Fatty Acid Analysis of the Seed Oil in a Germplasm Collection of 94 Species in 58 Genera of Brassicaceae

    Institute of Scientific and Technical Information of China (English)

    孙小芹; 庞慧; 郭建林; 彭斌; 自明明; 杭悦宇

    2011-01-01

    Fatty acid composition and their correlation with other quality traits in a germplasm collection of 94 species in 58 genu-ses of Brassicaceae were analyzed by the gas chromatography. The results showed that there were 13 kinds of main fatty acid components in seed oil. Their average contents were ranked from high to low as linolenic, erucic, linoleic, and oleic acids. There existed 10 pairs with extremely significant positive correlation between palmitics acid, and stearic acid, 11 pairs with extremely significant negative correlation between linolenic acid and erucic acid, 6 pairs with significant positive correlation between palmitic acid and linoleic acid, 4 pairs with, significant negative correlation between oleic acid and linolenic acid. As correlation coefficients reflecting the degree of relationship between some fatty acid pairs were relatively low, in these fatty acid pairs, only part or very few species were consistent with the corresponding relationship, or even none showed consistency with the relationship among 19 species with the highest or lowest fatty acid content. Some excellent gertnplasms were found with good development potentiality and application prospect, comprehensively as high oleic acid (L fendleri (A. Gray) S. Watson, etc. ) , high linoleic acid (O. Violaceus L. 0. E. Schulz, etc. ), zero erucic acid ( M. Africana ( Linnaeus) R. Brown, etc. ) , low linolenic acid (L. Annua L. , etc. ) , high oleic acid and low linolenic acid ( C. Hispanica L. , etc. ). High oleic acid and low erucic acid (O. Violaceus L. O. E. Schulz, etc. ) germplasms meeting the standard of edible oil and high erucic acid ( H. Rapa L , etc. ), and high linolenic acid (S. Eurycarpa ( Maxim. ) Botsch. Var. Brevistipes Y. C. Lan et T. Y. Cheo, etc. ) germplasms had important industrial uses. This study also laid a theoretical foundation for further exploration.%利用气相色谱法对十字花科58属94种野生植物种子进行了脂肪酸组分及含量测定,并对

  9. Bidirectional but asymmetrical sexual hybridization between Brassica carinata and Sinapis arvensis (Brassicaceae).

    Science.gov (United States)

    Cheung, Kyle W; Razeq, Fakhria M; Sauder, Connie A; James, Tracey; Martin, Sara L

    2015-05-01

    With transgenic crop development it is important to evaluate the potential for transgenes to escape into populations of wild, weedy relatives. Ethiopian mustard (Brassica carinata, BBCC) is easily transformed and is being investigated for uses from biodiesel fuels to biopharmaceuticals. However, little work has been done evaluating its ability to cross with relatives such as wild mustard (Sinapsis arvensis, SrSr), an abundant, cosmopolitan weedy relative. Here we conducted bidirectional crosses with Ethiopian mustard as a maternal parent in 997 crosses and paternal parent in 1,109 crosses. Hybrids were confirmed using flow cytometry and species-specific ITS molecular markers and indicate a high hybridization rate of 6.43 % between Ethiopian mustard (♀) and wild mustard (♂) and a lower, but not insignificant, hybridization rate of 0.01 % in the reverse direction. The majority of the hybrids were homoploid (BCSr) with less than 1 % of pollen production of their parents and low seed production (0.26 seeds/pollination) in crosses and backcrosses indicating a potential for advanced generation hybrids. The accession used had a significant effect on hybrid seed production with different accessions of Ethopian mustard varying in their production of hybrid offspring from 2.69 to 16.34 % and one accession of wild mustard siring almost twice as many hybrid offspring per flower as the other. One pentaploid (BBCCSr) and one hexaploid (BBCCSrSr) hybrid were produced and had higher pollen viability, though no and low seed production, respectively. As wild mustard is self-incompatible and the outcrossing rate of Ethiopian mustard has been estimated as 30 % potential for hybrid production in the wild appears to be high, though the hybridization rate found here represents a worst case scenario as it does not incorporate pre-pollination barriers. Hybridization in the wild needs to be directly evaluated as does the propensity of Ethiopian mustard to volunteer.

  10. Phylogenetic relationships of Erysimum (Brassicaceae from the Baetic Mountains (SE Iberian Peninsula

    Directory of Open Access Journals (Sweden)

    Abdelaziz, Mohamed

    2014-06-01

    Full Text Available The Baetic mountains, located in the southern Iberian Peninsula, is a major hotspot of biodiversity in the Mediterranean Basin, constituting one of the most important glacial refugia for vascular plants in Europe. Despite their relatively limited extension, the Baetic Mountains contain almost 50% of the total endemic Erysimum species in the Iberian Peninsula. The broadly distributed Erysimum genus has diversified profusely in the Mediterranean region, with more than a hundred species described in the area, out of a total of c. 200 species included in the genus. We used two plastid DNA regions (ndhF and trnT-L and one nuclear DNA region (ITS1-5.8S rDNA-ITS2, with 3,556 bp total length, to carry out phylogenetic analysis by Bayesian inference, maximum likelihood and maximum parsimony, in order to explore the evolutionary relationships between the Erysimum species inhabiting these ranges. Analyses of concatenated sequences from the two genomes identified two main clades with no overlap in species composition so that samples from the same species fell within the same major clade. The phylogenetic relationships depicted by those two clades do not give support to the E. nevadense group, previously proposed on taxonomic grounds. In addition, our results indicated recurrent changes in flower colour in the Baetic Erysimum species although, alternatively, reticulate evolution, which is suggested by incongruent position of taxa in the different trees, may have also affected this trait.Las cordilleras Béticas, localizadas en el sudeste de la Península Ibérica, representan una importante zona para la biodiversidad de la cuenca mediterránea, constituyendo uno de los refugios glaciares más destacados de plantas vasculares en Europa. A pesar de su extensión relativamente limitada, las cordilleras Béticas albergan casi el 50% del total de las especies endémicas de Erysimum de la Península Ibérica. Erysimum es un género ampliamente distribuido, que se ha diversificado profusamente en la región mediterránea, con más de un centenar de especies descritas en dicha área, del total de las alrededor de 200 especies incluidas en el género. Usamos dos regiones de ADN plastidial (ndhF y trnT-L y una región de ADN nuclear (ITS1-5.8S rDNA-ITS2, con una longitud total de 3.556 pb, para llevar a cabo análisis filogenéticos mediante inferencia bayesiana, máxima verosimilitud y máxima parsimonia, con el fin de explorar las relaciones evolutivas entre las especies de Erysimum que habitan en éstas cordilleras. El análisis de secuencias concatenadas de los dos genomas identifica dos clados principales y las muestras de la misma especie aparecen siempre en un clado o en el otro pero no en ambos. Las relaciones filogenéticas que indican esos dos clados no apoyan la circunscripción del grupo taxonómico E. nevadense, previamente definido en dicho género. Además, los análisis indican cambios recurrentes en el color floral de las especies de Erysimum que habitan los Sistemas Béticos aunque la evolución reticulada, que sugiere la posición de algunos taxones en uno y otro árbol, puede haber también afectado a este rasgo, lo que sería una hipótesis alternativa.

  11. Lectotypification of names of Himalayan Brassicaceae taxa currently placed in the genus Cardamine

    Directory of Open Access Journals (Sweden)

    Karol Marhold

    2015-05-01

    Full Text Available Lectotypes of twenty-eight names of taxa currently recognized or synonymized in Cardamine are designated as part of the work on the account of the genus for the Pan-Himalayan Flora. Among them, the previous first-step lectotypification of the name C. calthifolia is finalized. In cases when specimen images are available online, stable identifiers for specimens, other permanent links, or links via JSTOR Global Plants are provided.

  12. Lectotypification of names of Himalayan Brassicaceae taxa currently placed in the genus Cardamine.

    Science.gov (United States)

    Marhold, Karol; Kempa, Matúš; Al-Shehbaz, Ihsan A

    2015-01-01

    Lectotypes of twenty-eight names of taxa currently recognized or synonymized in Cardamine are designated as part of the work on the account of the genus for the Pan-Himalayan Flora. Among them, the previous first-step lectotypification of the name Cardaminecalthifolia is finalized. In cases when specimen images are available online, stable identifiers for specimens, other permanent links, or links via JSTOR Global Plants are provided.

  13. Gravity control of growth form in brassica rapa and arabidopsis thaliana (brassicaceae): consequences for secondary metabolism

    NARCIS (Netherlands)

    Allen, J.; Bisbee, P.A.; Darnell, R.L.; Kuang, A.; Levine, L.H.; Musgrave, M.E.; van Loon, J.J.W.A.

    2009-01-01

    How gravity influences the growth form and flavor components of plants is of interest to the space program because plants could be used for food and life support during prolonged missions away from the planet, where that constant feature of Earth’s environment does not prevail. We used plant growth

  14. Plant-pollinator interactions in Crambe abyssinicaHochst. (Brassicaceae associated with environmental variables

    Directory of Open Access Journals (Sweden)

    Lívia C. Simioni

    2015-03-01

    Full Text Available Despite the economic importance of Crambe abyssinica, the present study is the first report on bees that occur with this species, and could aid in developing alternative methods for controlling insect pests without seriously impacting pollinators. The present study examined the following questions: (1 Which species are potential pollinators of C. abyssinica? (2 How do environmental conditions influence pollinator visitation fluctuations? Insects were sampled on a weekly basis between 08:00 and 16:00 during five weeks of flowering. When the results of analyses of variance were significant, the data was adjusted using regression equations at a 5% level of probability; the environmental variables were examined using Pearson's correlation coefficient. Apis mellifera, Geotrigona mombuca, Exomalopsis (Exomalopsis fulvofasciata, Plebeia sp. and Dialictus sp. were observed visiting C. abyssinica flowers. A. melliferaand G. mombucawere observed to be potential pollinators, with the former demonstrating visitation peaks during flowering weeks II and IV at 12:00 and 08:00, respectively and the latter visiting during weeks III and IV at 12:00 and 10:00, respectively. Environmental factors such as temperature, relative humidity, and wind speed have different effect on the activity of bees.

  15. Asexual reproduction in a close relative of Arabidopsis: a genetic investigation of apomixis in Boechera ( Brassicaceae).

    NARCIS (Netherlands)

    Schranz, M.E.; Kantama, L.; Jong, de J.H.S.G.M.; Mitchell-Olds, T.

    2006-01-01

    Understanding apomixis (asexual reproduction through seeds) is of great interest to both plant breeders and evolutionary biologists. The genus Boechera is an excellent system for studying apomixis because of its close relationship to Arabidopsis, the occurrence of apomixis at the diploid level, and

  16. Asexual reproduction in a close relative of Arabidopsis: a genetic investigation of apomixis in Boechera (Brassicaceae).

    Science.gov (United States)

    Schranz, M Eric; Kantama, Laksana; de Jong, Hans; Mitchell-Olds, Thomas

    2006-01-01

    Understanding apomixis (asexual reproduction through seeds) is of great interest to both plant breeders and evolutionary biologists. The genus Boechera is an excellent system for studying apomixis because of its close relationship to Arabidopsis, the occurrence of apomixis at the diploid level, and its potentially simple inheritance by transmission of a heterochromatic (Het) chromosome. Diploid sexual Boechera stricta and diploid apomictic Boechera divaricarpa (carrying a Het chromosome) were crossed. Flow cytometry, karyotype analysis, genomic in situ hybridization, pollen staining and seed-production measurements were used to analyse the parents and resulting F1, F2 and selected F3 and test-cross (TC) generations. The F1 plant was a low-fertility triploid that produced a swarm of aneuploid and polyploid F2 progeny. Two of the F2 plants were fertile near-tetraploids, and analysis of their F3 and TC progeny revealed that they were sexual and genomically stabilized. The apomictic phenotype was not transmitted by genetic crossing as a single dominant locus on the Het chromosome, suggesting a complex genetic control of apomixis that has implications for future genetic and evolutionary analyses in this group.

  17. Phylogeny and biogeography of Alyssum (Brassicaceae) based on nuclear ribosomal ITS DNA sequences

    Indian Academy of Sciences (India)

    Yan Li; Yan Kong; Zhe Zhang; Yanqiang Yin; Bin Liu; Guanghui Lv; Xiyong Wang

    2014-08-01

    The genus Alyssum consists of about 195 species native to Europe, Asia and northern Africa. All species were assigned to six sections. Previous molecular phylogeny studies indicate that Alyssum is polyphyletic. However, the divergence time and dispersal of the genus are not well studied. In this study, the phylogenetic relationships within the genus Alyssum were studied with nrDNA ITS sequences obtained from five sections. The divergence time was estimated by fossil calibration and the biogeography was examined by spread analysis. The phylogeny indicated two main lineages: lineage 1 includes the section of Alyssum, Gamosepalum and Psilonema; lineage 2 includes the section of Odontarrhena, Meniocus and Clypeola. The phylogenetic relationship was not congruent with the previous sectional classifications. The age of Alyssum was dated to the upper Miocene. Molecular data suggested the diversification of Alyssum in Mediterranean areas and wide-ranging distribution such as North Africa, eastward into Central Asia and immigration into North America. Climatic aridification and arid/semiarid areas established in the Pliocene/Pleistocene could have provided favourable conditions for the migration and diversification of Alyssum.

  18. Sulfur-associated polioencephalomalacia in cattle grazing plants in the Family Brassicaceae.

    Science.gov (United States)

    McKenzie, R A; Carmichael, A M; Schibrowski, M L; Duigan, S A; Gibson, J A; Taylor, J D

    2009-01-01

    Polioencephalomalacia was diagnosed histologically in cattle from two herds on the Darling Downs, Queensland, during July-August 2007. In the first incident, 8 of 20 18-month-old Aberdeen Angus steers died while grazing pastures comprising 60%Sisymbrium irio (London rocket) and 40%Capsella bursapastoris (shepherd's purse). In the second incident, 2 of 150 mixed-breed adult cattle died, and another was successfully treated with thiamine, while grazing a pasture comprising almost 100%Raphanus raphanistrum (wild radish). Affected cattle were either found dead or comatose or were seen apparently blind and head-pressing in some cases. For both incidents, plant and water assays were used to calculate the total dietary sulfur content in dry matter as 0.62% and 1.01% respectively, both exceeding the recommended 0.5% for cattle eating more than 40% forage. Blood and tissue assays for lead were negative in both cases. No access to thiaminase, concentrated sodium ion or extrinsic hydrogen sulfide sources were identified in either incident. Below-median late summer and autumn rainfall followed by above-median unseasonal winter rainfall promoted weed growth at the expense of wholesome pasture species before these incidents.

  19. Brassicacea-based management strategies as an alternative to combat nematode pests

    NARCIS (Netherlands)

    Fourie, Hendrika; Ahuja, Preeti; Lammers, Judith; Daneel, Mieke

    2016-01-01

    Nematode pests parasitise and cause substantial crop yield and quality losses to a wide range of crops worldwide. To minimize such damage, the exploitation and development of alternative nematode control strategies are becoming increasingly important, particularly as a result of global efforts to

  20. Morphological, Anatomical and Palynological Studies on Endemic Matthiola anchoniifolia Hub. -Mor. (Brassicaceae

    Directory of Open Access Journals (Sweden)

    Mehmet TEKIN

    2013-05-01

    Full Text Available In this paper, anatomical, palynological and seed micromorphological properties of an endemic plant Matthiola anchoniifolia Hub.-Mor. are recorded for the first time. A description and descriptive illustrations of the species are given based on the collected specimens for morphological study. Seed surface of M. anchoniifolia is examined by scanning electron microscope. The seed of M. anchoniifolia was compressed, brownish in colour and the cells of testa were nearly 60-80 μm in diameter and ranged from isodiametric, tetragonal or pentagonal. The anticlinal walls were straight or weakly curved while the outer periclinal walls were concave to flat with smooth surface. In anatomical study, cross sections of root, stem and stem leaf are examined. The root had secondary structure. Periderm consists of 5-8 layers of cells for phellem. Cortex consists of 9-12 layered parenchymatic tissue under the periderm. Secondary phloem ring-shaped, 6-9 layered and consists of companion cells and grouped sieve tubes. Stem had primary structure when analyzed. It is circular with a few irregular ribs in cross section. Cortex is 8-12 layered and parenchymatous. Stoma cells are present on both epidermis. Leaf is isobilateral. There are unicellular and ramified hairs on both surface. Palisade parenchyma cells are 1-2 layered and spongy parenchyma cells are 5-12 layered. M. anchoniifolia has tricolpate pollen type, prolate pollen shape and reticulate exine ornamentation.

  1. Nickel hyperaccumulation as an elemental defense of Streptanthus polygaloides (Brassicaceae): influence of herbivore feeding mode.

    Science.gov (United States)

    Jhee, Edward M; Boyd, Robert S; Eubanks, Micky D

    2005-11-01

    No study of a single nickel (Ni) hyperaccumulator species has investigated the impact of hyperaccumulation on herbivores representing a variety of feeding modes. Streptanthus polygaloides plants were grown on high- or low-Ni soils and a series of no-choice and choice feeding experiments was conducted using eight arthropod herbivores. Herbivores used were two leaf-chewing folivores (the grasshopper Melanoplus femurrubrum and the lepidopteran Evergestis rimosalis), a dipteran rhizovore (the cabbage maggot Delia radicum), a xylem-feeder (the spittlebug Philaenus spumarius), two phloem-feeders (the aphid, Lipaphis erysimi and the spidermite Trialeurodes vaporariorum) and two cell-disruptors (the bug Lygus lineolaris and the whitefly Tetranychus urticae). Hyperaccumulated Ni significantly decreased survival of the leaf-chewers and rhizovore, and significantly reduced population growth of the whitefly cell-disruptor. However, vascular tissue-feeding insects were unaffected by hyperaccumulated Ni, as was the bug cell-disruptor. We conclude that Ni can defend against tissue-chewing herbivores but is ineffective against vascular tissue-feeding herbivores. The effects of Ni on cell-disruptors varies, as a result of either variation of insect Ni sensitivity or the location of Ni in S. polygaloides cells and tissues.

  2. Mechanisms of differential pollen donor performance in wild radish, Raphanus sativus (Brassicaceae).

    Science.gov (United States)

    Marshall, D L; Diggle, P K

    2001-02-01

    In order to understand the characters on which sexual selection might operate in plants, it is critical to assess the mechanisms by which pollen competition and mate choice occur. To address this issue we measured a number of postpollination characters, ranging from pollen germination and pollen tube growth to final seed paternity, in wild radish. Crosses were performed using four pollen donors on a total of 16 maternal plants (four each from four families). Maternal plants were grown under two watering treatments to evaluate the effects of maternal tissue on the process of mating. The four pollen donors differed significantly in number of seeds sired and differed overall in the mating characters measured. However, it was difficult to associate particular mechanistic characters with ability to sire seeds, perhaps because of interactions among pollen donors within styles or among pollen donors and maternal plants. The process of pollen tube growth and fertilization differed substantially among maternal watering treatments, with many early events occurring more quickly in stressed plants. Seed paternity, however, was somewhat more even among pollen donors used on stressed maternal plants, suggesting that when maternal tissue is more competent, mating is slowed and is more selective.

  3. Models of the fate of glucosinolates in Brassicaceae from processing to digestion

    NARCIS (Netherlands)

    Kruse, I.

    2015-01-01

    Abstract Glucosinolates are secondary metabolites of Brassica vegetables. Glucosinolates are not bioactive themselves, but their hydrolysis products isothiocyanates have been associated with health benefits. The concentrations of glucosinolates and their break down products are strongly affected by

  4. Pleiotropic effects of flowering time genes in the annual crucifer Arabidopsis thaliana (Brassicaceae)

    NARCIS (Netherlands)

    Van Tienderen, P.H.; Hammad, I.; Zwaal, F.C.

    1996-01-01

    Variation in flowering time of Arabidopsis thaliana was studied in an experiment with mutant lines. The pleiotropic effects of flowering time genes on morphology and reproductive yield were assessed under three levels of nutrient supply. At all nutrient levels flowering time and number of rosette le

  5. Arsenic accumulation in Brassicaceae seedlings and its effects on growth and plant anatomy.

    Science.gov (United States)

    de Freitas-Silva, Larisse; de Araújo, Talita Oliveira; da Silva, Luzimar Campos; de Oliveira, Juraci Alves; de Araujo, João Marcos

    2016-02-01

    We wished to evaluate the effects of arsenic on the morphology and anatomy of Brassica oleracea, Raphanus sativus, Brassica juncea, Brassica oleracea var. capitata and Brassica oleracea var. italica. Seeds were subjected to concentrations 0µM, 250µM, 350µM and 450µM arsenic in the form of sodium arsenate (Na2HAsO4·7H2O) during 12 days. All species accumulated more arsenic in the roots than in the shoots, except for B. oleracea var. capitata. There was no difference of translocation factor between species and treatments. Growth decrease was observed in roots of B. oleracea and R. sativus, and in shoots of R. sativus and B. oleracea var. italica. All species presented anatomical alterations in the roots, such as: cell hypertrophy, protoplast retraction, cellular plasmolysis, and necrotic regions. B. juncea presented collapse and hypertrophy of cells from the leaf blade tissues. Quantitative anatomical analyses performed on the root and leaves of B. oleracea and B. juncea revealed that arsenic interfered on the root vascular cylinder diameter and on height of epidermal cells of the adaxial leaf surface of both species. We concluded that arsenic was absorbed from the culture medium and induced alterations both on root and shoot growth of the seedlings. Retention of arsenic within the root was responsible for major damage in this organ.

  6. Development of near-infrared spectroscopy calibrations to measure quality characteristics in intact Brassicaceae germplasm

    Science.gov (United States)

    Determining seed quality parameters is an integral part of cultivar improvement and germplasm screening. However, quality tests are often time cnsuming, seed destructive, and can require large seed samples. This study describes the development of near-infrared spectroscopy (NIRS) calibrations to mea...

  7. Morpho-colorimetric analysis and seed germination of Brassica insularis Moris (Brassicaceae) populations.

    Science.gov (United States)

    Santo, A; Mattana, E; Grillo, O; Bacchetta, G

    2015-03-01

    Brassica insularis is a perennial plant growing on both coastal and inland cliffs. Three seed lots from Sardinia were analysed using an image analysis system to detect differences in seed morphology, both within and among populations. Germination requirements at constant (5-25 °C) and alternating temperatures (25/10 °C), both in light and in darkness, were evaluated for all populations. In addition, the effect of a dry after-ripening period (90 days at 25 °C) was also investigated. Morpho-colorimetric analysis clearly identified seeds from different populations and discriminated three chromatic categories for seeds belonging to the Isola dei Cavoli coastal population, but not for the inland Masùa and the coastal Planu Sartu. Inter-population variability was also observed in germination behaviour. B. insularis seeds germinated, with percentages up to 60%, in a wide range of temperatures (5-25 °C), and neither light nor dry after-ripening affected final germination percentages. Moisture content measurements were made for seeds of each colour, but there were no particular differences among colours. Inter-populational variability in germination behaviour may be a survival strategy for species growing under unpredictable environmental conditions, such as under Mediterranean climate, while heteromorphy may be due to independent evolutionary divergence processes of the Isola dei Cavoli population.

  8. Ionizing radiation mediated cytological manifestation in microsporogenesis of Brassica campestris L.(Brassicaceae

    Directory of Open Access Journals (Sweden)

    Girjesh KUMAR

    2012-12-01

    Full Text Available Purpose of the present work is to investigate the mutagenic effects of ionizing radiations (gamma rays on Brassica campestris L. accession no - IC363713. Homogeneous seeds of Brassica were irradiated at four doses of gamma rays i.e. 150 Gy, 300 Gy, 450 Gy and 600 Gy by the gamma-chamber type 60Co at the dose rate of 2 second/Gy. During microsporogenesis, meiotic analysis of young floral buds was carried out in irradiated as well as non-irradiated plant materials. Meiotic study clearly revealed the meiotic malfunctioning of pollen mother cells (PMCs that had shared copious count of cytological abnormalities namely unorientation, stickiness, precocious movement or fragmentation, secondary association of bivalents, asynchronous division, laggards, tripolarity and chromatin bridge. These aberrations were found to be distributed in all the phases of male meiosis. However, this impairing during meiosis has found to be collinearly associated with doses i.e. inclining tendency of abnormality percentage alongwith increasing doses were registered. Perhaps aforementioned chromosomal aberrations may be introduced by asymmetrical distribution of chromatin material in PMCs, had definitely compromised with pollen fertility, resulting the increased frequency of pollen sterility. Hence, pollen fertility registered, simultaneously, a moderate to sharp fall depending upon the intensity of doses.

  9. Termoestabilidade de processos extrativos de Nasturtium officinale R. Br., brassicaceae por sistema Soxhlet modificado Term-stability of extractive processes from Nasturtium officinale R. Br., brassicaceae for soxhlet modified system

    Directory of Open Access Journals (Sweden)

    João Luiz de Souza Carvalho

    2009-01-01

    Full Text Available This work had as objective verified the term-stability of the Soxhlet modified system with analytical and pharmacothecnical application in extractive processes of Nasturtium officinale. It has proven that the process is thermo-stable. The analysis with analytical have determined 3.606 mg g-1 in chlorogenic acid and 11.813 mg g-1 in rutin (extract 1:20 w/v and with pharmacotecnical 3.427 mg g-1 in chlorogenic acid and 11.278 mg g-1 in rutin (extract 1:6 w/v. The income of the pharmacothecnical process was inferior to the analytical, suggesting that the pharmacothecnical process would need of at least the double of time in each extraction system.

  10. Microsatellite Loci in the Gypsophyte Lepidium subulatum (Brassicaceae, and Transferability to Other Lepidieae

    Directory of Open Access Journals (Sweden)

    José Gabriel Segarra-Moragues

    2012-09-01

    Full Text Available Polymorphic microsatellite markers were developed for the Ibero-North African, strict gypsophyte Lepidium subulatum to unravel the effects of habitat fragmentation in levels of genetic diversity, genetic structure and gene flow among its populations. Using 454 pyrosequencing 12 microsatellite loci including di- and tri-nucleotide repeats were characterized in L. subulatum. They amplified a total of 80 alleles (2–12 alleles per locus in a sample of 35 individuals of L. subulatum, showing relatively high levels of genetic diversity, HO = 0.645, HE = 0.627. Cross-species transferability of all 12 loci was successful for the Iberian endemics Lepidium cardamines, Lepidium stylatum, and the widespread, Lepidium graminifolium and one species each of two related genera, Cardaria draba and Coronopus didymus. These microsatellite primers will be useful to investigate genetic diversity, population structure and to address conservation genetics in species of Lepidium.

  11. Dormancy breaking and seed germination of the annual weeds Thlaspi arvense, Descurainia sophia and Malcolmia africana (Brassicaceae

    Directory of Open Access Journals (Sweden)

    Karimmojeni Hassan

    2014-07-01

    Full Text Available In Iran, Descurainia sophia, Malcolmia africana, and Thlaspi arvense are abundantly found as importunate weeds in winter cereal. Understanding the timing of seed germination under natural conditions is crucial for learning how to manage these annual weeds. Therefore, this study was conducted to evaluate the effect of soil burial, dry storage, cold stratification, KNO3, GA3, and scarification on the seed dormancy and germination of these three species. Species had significantly different responses to the treatment. In D. sophia, seeds buried at a depth of 10 cm for 60 days (55%, and seeds dry stored at 20°C for 180 days (45% showed the highest level of germination. In M. africana, the germination percentage reached 95% when seeds buried at a depth of 1 cm were soaked in a GA3 concentration of 150 ppm. T. arvense had the lowest level of germination compared to the other species. The highest percentage of T. arvense germination was obtained in seeds treated with 150 ppm GA3. Potassium nitrate partly increased germinability in seeds of M. africana, which initially were less dormant than those of T. arvense and D. sophia.

  12. Interactive impacts of a herbivore and a pathogen on two resistance types of Barbarea vulgaris (Brassicaceae)

    DEFF Research Database (Denmark)

    Heimes, Christine; Thiele, Jan; van Mölken, Tamara

    2015-01-01

    by interactive impacts of the antagonists. Most of the insect-resistant G-plants were severely affected by white rust, which reduced biomass and reproductive potential compared to the controls. However, when also exposed to flea beetles, biomass loss was mitigated in G-plants, even though apparent disease...... the pathogen Albugo sp. (white blister rust) and the herbivorous flea beetle Phyllotreta nemorum affected each other's performance on two resistance types (G-type and P-type) of the crucifer Barbarea vulgaris ssp. arcuata, and whether biomass, reproduction and survival of the plants were affected...... symptoms were not reduced. Most of the insect-susceptible P-plants were resistant to white rust; however, the number of flea beetle mines tended to increase in plants also exposed to Albugo, and biomass at the last harvest was slightly lower in the combined treatment. Thus, interactive impacts...

  13. Allelopathy of Camelina sativa Boiss. (Brassicaceae) on germination and early development of Bidens pilosa (L.) and Glycine max (L.) Merr

    OpenAIRE

    Jéssica da Silva; Andréa Maria Teixeira Fortes; Fernanda Melo Gomes; Tassiane Terezinha Pinto; Thaliny Bonamigo; Nayara Parisoto Boiago

    2011-01-01

    This study evaluated the possible presence of allelopathic potential in camelina, as well as its effect on germination and early growth of soybean seedlings and beggarticks, in order, to verify the possibility of cultivating it with soybeans in a culture rotation system and its use as a herbicide. The experiments were carried out at the Laboratory of Plant Physiology of Universidade Estadual do Oeste do Paraná, Cascavel, Paraná, Brazil. The design was completely randomized and the evaluations...

  14. Allelopathy of Camelina sativa Boiss. (Brassicaceae on germination and early development of Bidens pilosa (L. and Glycine max (L. Merr

    Directory of Open Access Journals (Sweden)

    Jéssica da Silva

    2011-12-01

    Full Text Available This study evaluated the possible presence of allelopathic potential in camelina, as well as its effect on germination and early growth of soybean seedlings and beggarticks, in order, to verify the possibility of cultivating it with soybeans in a culture rotation system and its use as a herbicide. The experiments were carried out at the Laboratory of Plant Physiology of Universidade Estadual do Oeste do Paraná, Cascavel, Paraná, Brazil. The design was completely randomized and the evaluations were held daily. The parameters under analysis were: germination percentage, time and average speed of germination, and average root lenght. The data obtained underwent the F-Test and the mean values were compared through Tukey’s test, at a 5% probability level. The results confi rm the presence of allelopathic potential in camelina. It was found that this species can be considered an option for cultivating with soybean, due to the positive allelophatic interference caused in the culture and because it can be used in the control of weeds such as beggartick, having in mind that that it has delayed the development of the seedlings tested.

  15. 3D Plant Cell Architecture of Arabidopsis thaliana (Brassicaceae Using Focused Ion Beam–Scanning Electron Microscopy

    Directory of Open Access Journals (Sweden)

    Bhawana

    2014-06-01

    Full Text Available Premise of the study: Focused ion beam–scanning electron microscopy (FIB-SEM combines the ability to sequentially mill the sample surface and obtain SEM images that can be used to create 3D renderings with micron-level resolution. We have applied FIB-SEM to study Arabidopsis cell architecture. The goal was to determine the efficacy of this technique in plant tissue and cellular studies and to demonstrate its usefulness in studying cell and organelle architecture and distribution. Methods: Seed aleurone, leaf mesophyll, stem cortex, root cortex, and petal lamina from Arabidopsis were fixed and embedded for electron microscopy using protocols developed for animal tissues and modified for use with plant cells. Each sample was sectioned using the FIB and imaged with SEM. These serial images were assembled to produce 3D renderings of each cell type. Results: Organelles such as nuclei and chloroplasts were easily identifiable, and other structures such as endoplasmic reticula, lipid bodies, and starch grains were distinguishable in each tissue. Discussion: The application of FIB-SEM produced 3D renderings of five plant cell types and offered unique views of their shapes and internal content. These results demonstrate the usefulness of FIB-SEM for organelle distribution and cell architecture studies.

  16. Phylogeography of Thlaspi arvense (Brassicaceae in China Inferred from Chloroplast and Nuclear DNA Sequences and Ecological Niche Modeling

    Directory of Open Access Journals (Sweden)

    Miao An

    2015-06-01

    Full Text Available Thlaspi arvense is a well-known annual farmland weed with worldwide distribution, which can be found from sea level to above 4000 m high on the Qinghai-Tibetan Plateau (QTP. In this paper, a phylogeographic history of T. arvense including 19 populations from China was inferred by using three chloroplast (cp DNA segments (trnL-trnF, rpl32-trnL and rps16 and one nuclear (n DNA segment (Fe-regulated transporter-like protein, ZIP. A total of 11 chloroplast haplotypes and six nuclear alleles were identified, and haplotypes unique to the QTP were recognized (C4, C5, C7 and N4. On the basis of molecular dating, haplotypes C4, C5 and C7 have separated from others around 1.58 Ma for cpDNA, which corresponds to the QTP uplift. In addition, this article suggests that the T. arvense populations in China are a mixture of diverged subpopulations as inferred by hT/vT test (hT ≤ vT, cpDNA and positive Tajima’s D values (1.87, 0.05 < p < 0.10 for cpDNA and 3.37, p < 0.01 for nDNA. Multimodality mismatch distribution curves and a relatively large shared area of suitable environmental conditions between the Last Glacial Maximum (LGM as well as the present time recognized by MaxEnt software reject the sudden expansion population model.

  17. ANTIULCER ACTIVITY OF AQUEOUS EXTRACT OF FRESH LEAF OF BRASSICA OLERACEAE LINN. VAR. ACEPHALA (D.C ALEF (BRASSICACEAE

    Directory of Open Access Journals (Sweden)

    Agbaje, Esther Oluwatoyin

    2013-08-01

    Full Text Available Brassica oleraceae (BOL is the common cabbage and a familiar garden plant, widely used as spice all over the world. Cabbage is an excellent source of Vitamin C and has been widely employed locally to treat acute inflammation and peptic ulcers. The present study aimed at evaluating the anti¬ulcer activity of Brassica oleraceae, while identifying the phytoconstituents responsible for the observed effects and exploring some of the possible mechanisms of its anti¬ulcer activity, using standard laboratory procedures. Doses of 100, 300 and 750 mg / kg of Brassica oleraceae were separately administered to groups of overnight fasted rats, with appropriate standard drugs using Ethanol / HCl, Indomethacin and Cysteamine models to explore anti¬ulcer property of BOL on the stomach and duodenum respectively. The extract in a dose¬ dependent fashion, offered better protection against the ulcerogens in the gastric ulcer models, when compared with the positive control groups. However, the smallest dose of 100 mg / kg recorded the highest percentage protection in the cysteamine group. Up to 1200 mg / kg i.p and 10,000 mg / kg oral doses of Brassica oleraceae did not produce any mortality in mice. Phytochemical constituents identified included alkaloids, tannins, cardiac glycosides, flavonoids, phlobatannins, anthraquinones and saponins. The pH was 8.5. The present study has validated the local use of Brassica oleraceae in the treatment of peptic ulcer and the speculated mechanisms of action could be through acid neutralization, cytoprotection and antioxidation by flavonoids.

  18. Variation in the expression of chemical defenses in Alliaria petiolata (Brassicaceae) in the field and common garden.

    Science.gov (United States)

    Cipollini, Don

    2002-09-01

    I examined glucosinolates, trypsin inhibitors (TI), and peroxidase (POD) activity in garlic mustard (Alliaria petiolata) plants growing naturally in Wright State University's Forest Preserve and in a common garden experiment in plants from the same populations conducted in the greenhouse. In the field, first-year plants expressed each defense, but defense levels varied significantly in plants from different sites in the forest. Patterns in site variation were consistent for glucosinolate and POD, but not for TI. The TI and POD levels were increased by mechanical wounding, but glucosinolate levels were unaffected. In the greenhouse, plants expressed each defense at higher levels than in the field, but defense levels did not vary among plants collected from each site in the field. The POD activity was increased by wounding, but glucosinolate and TI levels where unaffected. Plants from each site varied in height and leaf length when measured shortly after transplantation, but site differences substantially diminished after 4 wk. Site-based variation in defense expression in the field, which disappeared in the greenhouse, was presumably related to differences in environmental quality among the sites. Sites were shown to vary in soil moisture content, soil pH, nutrient levels, and presumably light quantity or quality. Despite an apparent lack of genetic variation in defense across sites in the field, the constitutive expression of these three chemical defenses, increases due to wounding, and phenotypic variation across sites could reduce herbivore success on garlic mustard individuals and slow the rate of herbivore adaptation to garlic mustard populations.

  19. Structure of a Berberine Bridge Enzyme-Like Enzyme with an Active Site Specific to the Plant Family Brassicaceae

    DEFF Research Database (Denmark)

    Daniel, Bastian; Wallner, Silvia; Steiner, Barbara;

    2016-01-01

    Berberine bridge enzyme-like (BBE-like) proteins form a multigene family (pfam 08031), which is present in plants, fungi and bacteria. They adopt the vanillyl alcohol-oxidase fold and predominantly show bi-covalent tethering of the FAD cofactor to a cysteine and histidine residue, respectively...

  20. Preferential exclusion of hybrids in mixed pollinations between oilseed rape (Brassica napus) and weedy B. campestris (Brassicaceae)

    DEFF Research Database (Denmark)

    Hauser, T.P.; Bagger Jørgensen, Rikke; Østergård, Hanne

    1997-01-01

    for competition between male gametophytes and/or seeds within pods. To test whether competition influences the success of hybridization, pollen from the two species was mixed in different proportions and applied to stigmas of both species. The resulting seeds were scored for paternity by isozyme and randomly...

  1. Actividad leishmanicida de los extractos metanólicos de cuatro ecotipos de Lepidium peruvianum, Chacón (Brassicaceae

    Directory of Open Access Journals (Sweden)

    Libertad Alzamora

    2013-05-01

    Full Text Available El tratamiento clásico de la leishmaniosis cutánea consiste en la inyección de 15-20 ampollas de Glucantine lo que ocasiona efectos secundarios, este hecho justifica la búsqueda de nuevos medicamentos motivando la presente investigación. El objetivo fue evaluar in vitro la actividad leishmanicida de los extractos metanólicos (EM de los ecotipos blanco, rojo, morado y negro de Lepidium peruvianum, Chacón (también conocida como Lepidium meyenii Walp., sobre el crecimiento de Leishmania braziliensis peruviana. Los promastigotes alcanzaron la fase de crecimiento exponencial al quinto día de cultivo a 27 ºC en el medio bifásico Columbia, suplementado con 15% de sangre desfibrinada de carnero, en ese momento se enfrentaron, por separado, con los EM a concentraciones de 50, 100, 200 y 400 μg/ml. Los recuentos se hicieron diariamente con cámara Neubauer. La máxima disminución de promastigotes se produjo al segundo día de enfrentamiento para el ecotipo morado (17,41% de viabilidad empleando 400 μg/ml. El efecto leishmanicida estaría relacionado con los alcaloides imidazólicos presentes en el EM. Se concluye que al segundo día de enfrentamiento con el EM, el ecotipo morado presenta la mayor actividad leishmanicida seguido del ecotipo blanco.

  2. Taxonomy and systematics are key to biological information: Arabidopsis, Eutrema (Thellungiella, Noccaea and Schrenkiella (Brassicaceae as examples

    Directory of Open Access Journals (Sweden)

    Marcus A. Koch

    2013-07-01

    Full Text Available Taxonomy and systematics provide the names and evolutionary framework for any biological study. Without these names there is no access to a biological context of the evolutionary processes which gave rise to a given taxon: close relatives and sister species (hybridisation, more distantly related taxa (ancestral states, for example. This is not only true for the single species a research project is focusing on, but also for its relatives, which might be selected for comparative approaches and future research. Nevertheless, taxonomical and systematic knowledge is rarely fully explored and considered across biological disciplines. One would expect the situation to be more developed with model organisms such as Noccaea, Arabidopsis, Schrenkiella and Eutrema (Thellungiella. However, we show the reverse. Using Arabidopsis halleri and Noccaea caerulescens, two model species among metal accumulating taxa, we summarize and reflect past taxonomy and systematics of Arabidopsis and Noccaea and provide a modern synthesis of taxonomic, systematic and evolutionary perspectives. The same is presented for several species of Eutrema s. l. and Schrenkiella recently appeared as models for studying stress tolerance in plants and widely known under the name Thellungiella.

  3. Transcriptome sequencing of Crucihimalaya himalaica (Brassicaceae) reveals how Arabidopsis close relative adapt to the Qinghai-Tibet Plateau.

    Science.gov (United States)

    Qiao, Qin; Wang, Qia; Han, Xi; Guan, Yanlong; Sun, Hang; Zhong, Yang; Huang, Jinling; Zhang, Ticao

    2016-02-24

    The extreme environment of the Qinghai-Tibet Plateau (QTP) provides an ideal natural laboratory for studies on adaptive evolution. Few genome/transcriptome based studies have been conducted on how plants adapt to the environments of QTP compared to numerous studies on vertebrates. Crucihimalaya himalaica is a close relative of Arabidopsis with typical QTP distribution, and is hoped to be a new model system to study speciation and ecological adaptation in extreme environment. In this study, we de novo generated a transcriptome sequence of C. himalaica, with a total of 49,438 unigenes. Compared to five relatives, 10,487 orthogroups were shared by all six species, and 4,286 orthogroups contain putative single copy gene. Further analysis identified 487 extremely significantly positively selected genes (PSGs) in C. himalaica transcriptome. Theses PSGs were enriched in functions related to specific adaptation traits, such as response to radiation, DNA repair, nitrogen metabolism, and stabilization of membrane. These functions are responsible for the adaptation of C. himalaica to the high radiation, soil depletion and low temperature environments on QTP. Our findings indicate that C. himalaica has evolved complex strategies for adapting to the extreme environments on QTP and provide novel insights into genetic mechanisms of highland adaptation in plants.

  4. SNP discovery using Paired-End RAD-tag sequencing on pooled genomic DNA of Sisymbrium austriacum (Brassicaceae).

    Science.gov (United States)

    Vandepitte, K; Honnay, O; Mergeay, J; Breyne, P; Roldán-Ruiz, I; De Meyer, T

    2013-03-01

    Single nucleotide polymorphisms SNPs are rapidly replacing anonymous markers in population genomic studies, but their use in non model organisms is hampered by the scarcity of cost-effective approaches to uncover genome-wide variation in a comprehensive subset of individuals. The screening of one or only a few individuals induces ascertainment bias. To discover SNPs for a population genomic study of the Pyrenean rocket (Sisymbrium austriacum subsp. chrysanthum), we undertook a pooled RAD-PE (Restriction site Associated DNA Paired-End sequencing) approach. RAD tags were generated from the PstI-digested pooled genomic DNA of 12 individuals sampled across the species distribution range and paired-end sequenced using Illumina technology to produce ~24.5 Mb of sequences, covering ~7% of the specie's genome. Sequences were assembled into ~76 000 contigs with a mean length of 323 bp (N(50)  = 357 bp, sequencing depth = 24x). In all, >15 000 SNPs were called, of which 47% were annotated in putative genic regions based on homology with the Arabidopsis thaliana genome. Gene ontology (GO) slim categorization demonstrated that the identified SNPs covered extant genic variation well. The validation of 300 SNPs on a larger set of individuals using a KASPar assay underpinned the utility of pooled RAD-PE as an inexpensive genome-wide SNP discovery technique (success rate: 87%). In addition to SNPs, we discovered >600 putative SSR markers.

  5. Compositional variations for alpha-galactosides in different species of leguminosae, brassicaceae, and barley: a chemotaxonomic study based on chemometrics and high-performance capillary electrophoresis.

    Science.gov (United States)

    Andersen, Keld Ejdrup; Bjergegaard, Charlotte; Møller, Peter; Sørensen, Jens Christian; Sørensen, Hilmer

    2005-07-13

    The contents of raffinose family oligosaccharides (RFO) and sucrose in Brassica, Lupinus, Pisum, and Hordeum species were investigated by chemometric principal component analysis (PCA). Hordeum samples contained sucrose and raffinose, and Brassica samples all contained sucrose, raffinose, and stachyose. In addition to these, the Pisum samples contained verbascose and the Lupinus samples also contained ajugose. High stachyose and low ajugose contents were found in Lupinus albus in contrast to Lupinus angustifolius, having low stachyose and high ajugose contents. Lupinus luteus had average stachyose and ajugose contents, whereas large amounts of verbascose were accumulated in these seeds. Lupinus mutabilis had high stachyose and low ajugose contents, similar to the composition in L. albus but showing higher raffinose content. The Brassica samples also showed compositional RFO variations within the species, and subgroup formations were discovered within the investigated Brassica napus varieties. PCA results indicated compositional variations between the investigated genera and within the various species of value as chemotaxonomic defined parameters and as tools in evaluations of authenticity/falsifications when RFO-containing plants are used as, for example, feed and food additives.

  6. Evaluation of the potential for interspecific hybridization between Camelina sativa and related wild Brassicaceae in anticipation of field trials of GM camelina.

    Science.gov (United States)

    Julié-Galau, Stéphane; Bellec, Yannick; Faure, Jean-Denis; Tepfer, Mark

    2014-02-01

    Camelina (Camelina sativa (L.) Crantz) is a re-emergent oilseed crop that is also becoming important as a model for applied projects based on studies in Arabidopsis thaliana, since the two species are closely related members of the tribe Camelineae of the Brassicaeae. Since camelina can be transformed genetically by floral dip, genetically modified (GM) camelina is being created in many laboratories, and small-scale field trials are already being conducted in the US and Canada. Although camelina does not cross-fertilize Brassica crop species, such as oilseed rape, nothing was known about its ability to cross with other members of the tribe Camelineae, which in addition to arabidopsis includes the widespread weed, shepherd's purse (Capsella bursa-pastoris). We have tested the ability of camelina to cross with arabidopsis and C. bursa-pastoris, as well as with the more distantly related Cardamine hirsuta, tribe cardamineae. No seeds were produced in crosses with arabidopsis, and a few seeds were obtained in crosses with C. hirsuta, but the embryos aborted at an early stage of development. A few seeds were also obtained in crosses with C. bursa-pastoris, which germinated to produce plants of a phenotype intermediate to that of the parents, but the hybrids were both male and female sterile. Therefore, the likelihood of pollen-mediated gene flow from camelina to these related species is low.

  7. Rice-straw mulch reduces the green peach aphid, Myzus persicae (Hemiptera: Aphididae) populations on kale, Brassica oleracea var. acephala (Brassicaceae) plants.

    Science.gov (United States)

    Silva-Filho, Reinildes; Santos, Ricardo Henrique Silva; Tavares, Wagner de Souza; Leite, Germano Leão Demolin; Wilcken, Carlos Frederico; Serrão, José Eduardo; Zanuncio, José Cola

    2014-01-01

    Organic mulches, like peel and rice-straw, besides other materials affect the UV and temperature, which cause a reduction in the aphid arrival. The aim was to evaluate the effect of covering the soil with straw on the populations of the green peach aphid, Myzus persicae on the kale, Brassica oleracea var. acephala plants. The first experiment evaluated the direct effect of the rice-straw mulch and the second its indirect effect on aphid immigration, testing the plant characteristics that could lead to the landing preference of this insect. The third experiment evaluated the direct effect of the mulch on the aphid population. In the second and third experiments, four plants, each in a 14 L polyethylene pot with holes at the bottom, were used in areas with and without soil mulching. These pots were changed between areas, after seven days, to evaluate the effects of this change on the arrival of the winged aphids to the plants. Each plant was covered with anti-aphid gauze and inoculated with one winged M. persicae. Winged and apterous adults of this insect were counted per plant after 15 days. The temperature increased in the mulched plots to a maximum of 21-36°C and to 18-32°C in the plots with or without soil covering, respectively. Plant growth reduced the numbers of the winged aphids landing before and after they were moved to the bare soil plots. The nutrient content was similar in plants in both the mulched and no mulched plots. The population growth of M. persicae was higher in the control than in the mulched plots. This was partially due to temperatures close to 30°C in these plots and changes in the plant physiology. The soil mulching with rice-straw decreased the M. persicae landing, increased the plot temperatures and improved the vegetative growth of the kale plants.

  8. Phylogeography of Arabidopsis halleri (Brassicaceae) in mountain regions of Central Europe inferred from cpDNA variation and ecological niche modelling

    Science.gov (United States)

    Pauwels, Maxime; Pasierbinski, Andrzej; Przedpelska-Wasowicz, Ewa M.; Babst-Kostecka, Alicja A.; Saumitou-Laprade, Pierre; Rostanski, Adam

    2016-01-01

    The present study aimed to investigate phylogeographical patterns present within A. halleri in Central Europe. 1,281 accessions sampled from 52 populations within the investigated area were used in the study of genetic variation based on chloroplast DNA. Over 500 high-quality species occurrence records were used in ecological niche modelling experiments. We evidenced the presence of a clear phylogeographic structure within A. halleri in Central Europe. Our results showed that two genetically different groups of populations are present in western and eastern part of the Carpathians. The hypothesis of the existence of a glacial refugium in the Western Carpathians adn the Bohemian Forest cannot be rejected from our data. It seems, however, that the evidence collected during the present study is not conclusive. The area of Sudetes was colonised after LGM probably by migrants from the Bohemian Forest. PMID:26835186

  9. Relative fitness of females and hermaphrodites in a natural gynodioecious population of wild radish, Raphanus sativus L. (Brassicaceae): comparison based on molecular genotyping.

    Science.gov (United States)

    Miyake, K; Miyake, T; Terachi, T; Yahara, T

    2009-10-01

    In many gynodioecious species, sex determination involves both cytoplasmic male-sterility (CMS) genes and nuclear genes that restore male function. Differences in fitness among genotypes affect the dynamics of those genes, and thus that of gynodioecy. We used a molecular marker to discriminate between hermaphrodites with and without a CMS gene in gynodioecious Raphanus sativus. We compared fitness through female function among the three genotypes: females, hermaphrodites with the CMS gene and those without it. Although there was no significant difference among the genotypes in seed size, hermaphrodites without the CMS gene produced significantly more seeds, and seeds with a higher germination rate than the other genotypes, suggesting no fitness advantage for females and no benefit to bearing the CMS gene. Despite the lack of fitness advantage for females in the parameter values we estimated, a theoretical model of gynodioecy shows it can be maintained if restorer genes impose a cost paid in pollen production. In addition, we found that females invest more resources into female reproduction than hermaphrodites when they become larger. If environmental conditions enable females to grow larger this would facilitate the dynamics of CMS genes.

  10. Development of a liquid chromatography-electrospray ionization-tandem mass spectrometry method for the simultaneous analysis of intact glucosinolates and isothiocyanates in Brassicaceae seeds and functional foods.

    Science.gov (United States)

    Franco, P; Spinozzi, S; Pagnotta, E; Lazzeri, L; Ugolini, L; Camborata, C; Roda, A

    2016-01-08

    A new high pressure liquid chromatography-electrospray ionization-tandem mass spectrometry method for the simultaneous determination of glucosinolates, as glucoraphanin and glucoerucin, and the corresponding isothiocyanates, as sulforaphane and erucin, was developed and applied to quantify these compounds in Eruca sativa defatted seed meals and enriched functional foods. The method involved solvent extraction, separation was achieved in gradient mode using water with 0.5% formic acid and acetonitrile with 0.5% formic acid and using a reverse phase C18 column. The electrospray ion source operated in negative and positive mode for the detection of glucosinolates and isothiocyanates, respectively, and the multiple reaction monitoring (MRM) was selected as acquisition mode. The method was validated following the ICH guidelines. Replicate experiments demonstrated a good accuracy (bias%<10%) and precision (CV%<10%). Detection limits and quantification limits are in the range of 1-400ng/mL for each analytes. Calibration curves were validated on concentration ranges from 0.05 to 50μg/mL. The method proved to be suitable for glucosinolates and isothiocyanates determination both in biomasses and in complex matrices such as food products enriched with glucosinolates, or nutraceutical bakery products. In addition, the developed method was applied to the simultaneous determination of glucosinolates and isothiocyanates in bakery product enriched with glucosinolates, to evaluate their thermal stability after different industrial processes from cultivation phases to consumer processing.

  11. Secondary structure analyses of the nuclear rRNA internal transcribed spacers and assessment of its phylogenetic utility across the Brassicaceae (mustards.

    Directory of Open Access Journals (Sweden)

    Patrick P Edger

    Full Text Available The internal transcribed spacers of the nuclear ribosomal RNA gene cluster, termed ITS1 and ITS2, are the most frequently used nuclear markers for phylogenetic analyses across many eukaryotic groups including most plant families. The reasons for the popularity of these markers include: 1. Ease of amplification due to high copy number of the gene clusters, 2. Available cost-effective methods and highly conserved primers, 3. Rapidly evolving markers (i.e. variable between closely related species, and 4. The assumption (and/or treatment that these sequences are non-functional, neutrally evolving phylogenetic markers. Here, our analyses of ITS1 and ITS2 for 50 species suggest that both sequences are instead under selective constraints to preserve proper secondary structure, likely to maintain complete self-splicing functions, and thus are not neutrally-evolving phylogenetic markers. Our results indicate the majority of sequence sites are co-evolving with other positions to form proper secondary structure, which has implications for phylogenetic inference. We also found that the lowest energy state and total number of possible alternate secondary structures are highly significantly different between ITS regions and random sequences with an identical overall length and Guanine-Cytosine (GC content. Lastly, we review recent evidence highlighting some additional problematic issues with using these regions as the sole markers for phylogenetic studies, and thus strongly recommend additional markers and cost-effective approaches for future studies to estimate phylogenetic relationships.

  12. The influence of population structure on gene expression and flowering time variation in the ubiquitous weed Capsella bursa-pastoris (Brassicaceae).

    Science.gov (United States)

    Kryvokhyzha, Dmytro; Holm, Karl; Chen, Jun; Cornille, Amandine; Glémin, Sylvain; Wright, Stephen I; Lagercrantz, Ulf; Lascoux, Martin

    2016-03-01

    Population structure is a potential problem when testing for adaptive phenotypic differences among populations. The observed phenotypic differences among populations can simply be due to genetic drift, and if the genetic distance between them is not considered, the differentiation may be falsely interpreted as adaptive. Conversely, adaptive and demographic processes might have been tightly associated and correcting for the population structure may lead to false negatives. Here, we evaluated this problem in the cosmopolitan weed Capsella bursa-pastoris. We used RNA-Seq to analyse gene expression differences among 24 accessions, which belonged to a much larger group that had been previously characterized for flowering time and circadian rhythm and were genotyped using genotyping-by-sequencing (GBS) technique. We found that clustering of accessions for gene expression retrieved the same three clusters that were obtained with GBS data previously, namely Europe, the Middle East and Asia. Moreover, the three groups were also differentiated for both flowering time and circadian rhythm variation. Correction for population genetic structure when analysing differential gene expression analysis removed all differences among the three groups. This may suggest that most differences are neutral and simply reflect population history. However, geographical variation in flowering time and circadian rhythm indicated that the distribution of adaptive traits might be confounded by population structure. To bypass this confounding effect, we compared gene expression differentiation between flowering ecotypes within the genetic groups. Among the differentially expressed genes, FLOWERING LOCUS C was the strongest candidate for local adaptation in regulation of flowering time.

  13. Origin of the CMS gene locus in rapeseed cybrid mitochondria: active and inactive recombination produces the complex CMS gene region in the mitochondrial genomes of Brassicaceae.

    Science.gov (United States)

    Oshima, Masao; Kikuchi, Rie; Imamura, Jun; Handa, Hirokazu

    2010-01-01

    CMS (cytoplasmic male sterile) rapeseed is produced by asymmetrical somatic cell fusion between the Brassica napus cv. Westar and the Raphanus sativus Kosena CMS line (Kosena radish). The CMS rapeseed contains a CMS gene, orf125, which is derived from Kosena radish. Our sequence analyses revealed that the orf125 region in CMS rapeseed originated from recombination between the orf125/orfB region and the nad1C/ccmFN1 region by way of a 63 bp repeat. A precise sequence comparison among the related sequences in CMS rapeseed, Kosena radish and normal rapeseed showed that the orf125 region in CMS rapeseed consisted of the Kosena orf125/orfB region and the rapeseed nad1C/ccmFN1 region, even though Kosena radish had both the orf125/orfB region and the nad1C/ccmFN1 region in its mitochondrial genome. We also identified three tandem repeat sequences in the regions surrounding orf125, including a 63 bp repeat, which were involved in several recombination events. Interestingly, differences in the recombination activity for each repeat sequence were observed, even though these sequences were located adjacent to each other in the mitochondrial genome. We report results indicating that recombination events within the mitochondrial genomes are regulated at the level of specific repeat sequences depending on the cellular environment.

  14. Rice-straw mulch reduces the green peach aphid, Myzus persicae (Hemiptera: Aphididae populations on kale, Brassica oleracea var. acephala (Brassicaceae plants.

    Directory of Open Access Journals (Sweden)

    Reinildes Silva-Filho

    Full Text Available Organic mulches, like peel and rice-straw, besides other materials affect the UV and temperature, which cause a reduction in the aphid arrival. The aim was to evaluate the effect of covering the soil with straw on the populations of the green peach aphid, Myzus persicae on the kale, Brassica oleracea var. acephala plants. The first experiment evaluated the direct effect of the rice-straw mulch and the second its indirect effect on aphid immigration, testing the plant characteristics that could lead to the landing preference of this insect. The third experiment evaluated the direct effect of the mulch on the aphid population. In the second and third experiments, four plants, each in a 14 L polyethylene pot with holes at the bottom, were used in areas with and without soil mulching. These pots were changed between areas, after seven days, to evaluate the effects of this change on the arrival of the winged aphids to the plants. Each plant was covered with anti-aphid gauze and inoculated with one winged M. persicae. Winged and apterous adults of this insect were counted per plant after 15 days. The temperature increased in the mulched plots to a maximum of 21-36°C and to 18-32°C in the plots with or without soil covering, respectively. Plant growth reduced the numbers of the winged aphids landing before and after they were moved to the bare soil plots. The nutrient content was similar in plants in both the mulched and no mulched plots. The population growth of M. persicae was higher in the control than in the mulched plots. This was partially due to temperatures close to 30°C in these plots and changes in the plant physiology. The soil mulching with rice-straw decreased the M. persicae landing, increased the plot temperatures and improved the vegetative growth of the kale plants.

  15. Investigation of Genotypic Difference of Nitrate Contents in Brassicaceae Eruca vesicaria (L.) Cav. var. sativa%芝麻菜硝酸盐含量基因型差异研究

    Institute of Scientific and Technical Information of China (English)

    雷娟利; 寿伟松; 董文其; 徐志豪

    2007-01-01

    对从国内外引进的170个芝麻菜品种,采用水杨酸-浓硫酸方法进行了硝酸盐含量的测定,结果表明芝麻菜基因型间硝酸盐含量存在显著差异,可划分为硝酸盐含量高和硝酸盐含量低的品种类群.

  16. Producción de IFN−γ en cultivos de linfocitos humanos por efecto de los extractos metanólicos de cuatro ecotipos de Lepidium peruvianum, Chacón (Brassicaceae

    Directory of Open Access Journals (Sweden)

    Libertad Alzamora

    2013-05-01

    Full Text Available Se estudió la actividad inmunoduladora sobre cultivos de linfocitos T humanos de sangre periférica. Se evaluó la producción de IFN−γ inducida por los extractos metanólicos (EM de los ecotipos blanco, negro, rojo y morado de Lepidium peruvianum (conocida también como Lepidium meyenii Walp. maca. Luego de cultivar los linfocitos con los respectivos EM de maca durante 14 horas sólo el EM del ecotipo morado indujo la producción significativa de IFN−γ cuantificada mediante Elispot. El extracto metanólico del ecotipo morado de maca posee propiedades inmunoestimuladoras importantes, desencadenando la activación de linfocitos T humanos.

  17. Feeding preferences of Microtheca punctigera (Achard (Coleoptera: Chrysomelidae for some Brassicaceae plants in multiple-choice assays Preferência alimentar de Microtheca punctigera (Achard (Coleoptera: Chrysomelidae por algumas crucíferas em testes de mútipla escolha

    Directory of Open Access Journals (Sweden)

    Ayres Oliveira Menezes Jr.

    2005-01-01

    Full Text Available Host plant feeding preference is important basic information for the development of insect management strategies. Multiple-choice feeding preference assays were conducted in the laboratory for the chrysomelid beetle, Microtheca punctigera (Achard. Feeding was assessed 72 h after onset of experiments. With one larva per Petri dish, food items comprised watercress, Nasturtium officinale L., arugula, Eruca sativa L., mustard, Brassica juncea Cosson, Chinese cabbage, B. pekinensis (Lour. Rupr. and wild radish (Raphanus raphanistrum L.. Feeding ranking preferences were Chinese cabbage, mustard, wild radish, arugula and watercress (7.97, 1.85, 0.98, 0.36 and 0.11 mm², respectively. Feeding on Chinese cabbage was 4.31 times more intense than on mustard. The same experiment was repeated with one adult per dish. Responses of males and females were quite similar. Feeding was higher on mustard (87.2 and 142.8 for males and females, respectively. Feeding on arugula (51.5 and 132.7 and Chinese cabbage (51.8 and 89.0 were intermediate. Watercress (22.96 and 39.3 and wild radish (12.03 and 28.4 were the least preferred host plants. In a third experiment, ten larvae per dish were used and spinach, Tetragonia expansa Murr., radish, Raphanus sativus L. and collard, B. oleracea var. acephala L., were also included. Daily larval frequencies on each food were also measured. Feeding was similar on Chinese cabbage and mustard (47.89 and 53.78, respectively. Number of insects was greater on mustard, Chinese cabbage and wild radish. Probable explanations for results and proposals for further investigations are discussed.Preferência alimentar é informação básica importante para o desenvolvimento de estratégias de manejo. Experimentos de preferência alimentar com múltipla chance de escolha foram conduzidos em laboratório para o crisomelídeo Microtheca punctigera (Acherd. A alimentação foi avaliada 72h após o início dos experimentos. Com uma larva por placa de Petri, foram utilizadas discos de folhas de almeirão, Nasturtium officinale L., rúcula, Eruca sativa L., mostarda, Brassica juncea Cosson, couve chinesa, B. pekinensis (Lour. Rupr., e nabiça (Raphanus raphanistrum L.. A alimentação em ordem decrescente foi em couve chinesa, mostarda, nabiça, rúcula e almeirão (7,97; 1,85; 0,98; 0,36 e 0,11 mm², respectivamente. A alimentação em couve chinesa foi de 4,31 vezes maior do que em mostarda. O mesmo experimento foi repetido com um adulto por placa. Respostas de machos e fêmeas foram similares. A alimentação foi maior em mostarda (87,2 e 142,8 para machos e fêmeas, respectivamente; em rúcula (51,5 e 132,7 e couve chinesa (51,8 e 89,0 foi intermediária. Agrião (22,96 e 39,3 e nabiça (12,03 e 28,4 foram os menos consumidos. Num terceiro experimento, dez larvas por placa foram usadas, incluindo-se também espinafre, Tetragonia expansa Murr., rabanete, Raphanus sativus L., e couve, B. oleracea var. acephala L. A freqüências diárias de larvas em cada alimento foram também medidas. A alimentação foi similar em couve chinesa e mostarda (47,89 e 53,78, respectivamente. O número de insetos foi maior em mostarda, couve chinesa e nabiça. Prováveis explicações da preferência e proposições de novas pesquisas são discutidos.

  18. Glucosinolate diversity within a phylogenetic framework of the tribe Cardamineae (Brassicaceae) unraveled with HPLC-MS/MS and NMR-based analytical distinction of 70 desulfoglucosinolates

    DEFF Research Database (Denmark)

    Olsen, Carl Erik; Huang, Xiao-Chen; Hansen, Cecilie Ida Cetti

    2016-01-01

    As a basis for future investigations of evolutionary trajectories and biosynthetic mechanisms underlying variations in glucosinolate structures, we screened members of the crucifer tribe Cardamineae by HPLC-MS/MS, isolated and identified glucosinolates by NMR, searched the literature for previous...

  19. Capacidade reprodutiva e preferência da traça-das-crucíferas para diferentes brassicáceas Reproductive capacity and preference of the diamondback moth feeding on different brassicacea

    Directory of Open Access Journals (Sweden)

    Sergio A De Bortoli

    2011-06-01

    Full Text Available O objetivo desta pesquisa foi comparar diferentes cultivares de brassicáceas em relação à capacidade reprodutiva e preferência para alimentação e oviposição da traça-das-crucíferas. Os experimentos foram realizados utilizando-se as cultivares de repolho Midori, Chato-de-Quintal, híbridos da Top Seed® - Agristar (TPC 308, TPC 681 e TPC 668, couve-flor Bola de Neve, couve brócolis Ramoso Piracicaba Precoce e couve Manteiga da Geórgia, sendo esta última utilizada como padrão de suscetibilidade. Por meio dos dados biológicos de P. xylostella foram estimados os parâmetros necessários para a construção de tabela de vida de fertilidade, para comparação das cultivares testadas em relação à capacidade reprodutiva da praga. Em gaiolas de criação da traça-das-crucíferas foram colocados quatro quartos de folha, dois a dois, que justapostos formavam um círculo de 8 cm de diâmetro, confrontando-se os materiais dois a dois. As partes foram dispostas equidistantemente, para realização do teste de dupla chance de escolha (preferência para alimentação e oviposição e de múltipla chance de escolha, confrontando todos os substratos (preferência para alimentação. As cultivares que proporcionaram melhor desenvolvimento e reprodução para a traça-das-crucíferas foram couve Manteiga da Geórgia e couve brócolis. Para preferência alimentar constatou-se alta suscetibilidade em couve Manteiga e TPC 681 e para preferência de oviposição alta preferência para couve-flor Bola de Neve. Com isso, sugere-se a divisão das cultivares estudadas em quatro classes distintas: repolho Midori como moderadamente resistente (MR; couve-flor Bola de Neve e repolho Chato-de-Quintal como suscetíveis (S; couve brócolis, TPC308, TPC681 e TPC668 como moderadamente suscetíveis (MS; e couve Manteiga como altamente suscetível (AS.We compared different cultivars of crucifer in relation to reproductive capacity and preference for feeding and oviposition of the diamondback moth. The experiments were carried out with the following cultivars: Midori and Chato-de-Quintal cabbage, hybrids of cabbage Top Seed® - Agristar (TPC 308, TPC 681 and TPC 668, cauliflower Bola de Neve, broccolis Ramoso Piracicaba Precoce and collard green Manteiga da Geórgia, being this last one used as the susceptible control. Through the biological parameters of P. xylostella we elaborated a fertility life table, Comparing the cultivars in relation to the pest reproductive capacity. Four leaf parts were placed in diamondback moth rearing chambers, being two leaves of the treatment and two of the control which, put together formed a circle with 8 cm in diameter. The parts were disposed in an equidistantly form, to perform the dual-choice test (feeding and oviposition preference and multiple-choice test, confronting all substrates (feeding preference. The cultivars that provided better development and reproduction for the diamondback moth were collard green Manteiga da Georgia and broccolis Ramoso Piracicaba Precoce. For feeding preference high susceptibility was verified in collard green Manteiga da Geórgia and TPC 681 and for oviposition preference high preference was observed for cauliflower Bola de Neve. Four different groups of cultivars could be formed: cabbage Midori as moderately resistant (MR; cauliflower Bola de Neve and cabbage Chato-de-Quintal as susceptible (S; broccolis, TPC 308, TPC 681 and TPC 668 as moderately susceptible (MS; and collard green as highly susceptible (HS.

  20. Environ: E00362 [KEGG MEDICUS

    Lifescience Database Archive (English)

    Full Text Available nctoria [TAX:161756], Isatis indigotica [TAX:161756], Strobilanthes cusia [TAX:222567] Brassicaceae (mustard family) Isatis, Acanthac...eae (acanthus family) Strobilanthes root and rhizome Cru

  1. Environ: E00380 [KEGG MEDICUS

    Lifescience Database Archive (English)

    Full Text Available E00380 Raphanus sativus seed Crude drug Fatty oil Raphanus sativus [TAX:3726] Brass...icaceae (mustard family) Raphanus sativus seed Crude drugs [BR:br08305] Dicot plants: rosids Brassicaceae (mustard family) E00380 Raphanus sativus seed ...

  2. Allelopathy effects of leaf water extracts from an invasive species Leucaena leucocephala on the seed germinations of three brassicaceae vegetable species%银合欢叶片水提液对3种蔬菜种子萌发的化感效应

    Institute of Scientific and Technical Information of China (English)

    陶文琴; 林佳如; 郭艳霞; 黄丽宜; 缪绅裕; 王厚麟; 黎延阳; 宋健新

    2013-01-01

    研究外来入侵植物银合欢(Leucaena leucocephala)叶片的化感作用,为揭示潜在的生态危害提供参考.配置不同浓度的银合欢叶水提液处理3种十字花科蔬菜种子,按生物测定方法及公式计算其化感指数和综合效应.结果显示,随着银合欢叶水提液浓度的增加,对芥菜(Brassicajuncea)、菜心(B.parachinensis)和白菜(B.pekinensis)种子萌发和根长生长的抑制作用增强,且抑制作用大小整体表现为芥菜>菜心>白菜;不同浓度叶水提液对不同受体植物幼苗茎长生长的影响情况较复杂.综合效应指数表明,银合欢叶对3种十字花科蔬菜作物种子萌发均有较明显的化感作用.结果提示,银合欢作为外来入侵植物,因具较强的化感效应,需加强防治.

  3. Parasitoid-plant mutualism : parasitoid attack of herbivore increases plant reproduction

    NARCIS (Netherlands)

    Loon, van J.J.A.; Boer, de J.G.; Dicke, M.

    2000-01-01

    We tested whether a plant's life time seed production is increased by parasitization of herbivores in a tritrophic system, Arabidopsis thaliana (Brassicaceae) plants, Pieris rapae (Lepidoptera: Pieridae) caterpillars and the solitary endoparasitoid Cotesia rubecula (Hymenoptera: Braconidae). We esta

  4. Drug: D09374 [KEGG MEDICUS

    Lifescience Database Archive (English)

    Full Text Available D09374 Crude, Drug Rapeseed oil, fully hydrogenated superglycerinated (NF) Brassica... napus [TAX:3708], Brassica campestris [TAX:439823] Brassicaceae (mustard family) Brassica napus, Brassica campestris seed oil hydrogenated, superglycerinated PubChem: 96026054 ...

  5. Effects of glucosinolates and their hydrolysis products on biochemical and performance parameters in broiler chicken diets

    Science.gov (United States)

    Glucosinolates are important bioactive molecules and widely found in Brassicaceae species (cress, brussels sprouts, mustard, broccoli, kale, etc.). Depending on the amount of these vegetables consumed, both positive and negative metabolic effects from glucosinolate metabolites may occur. The aim of ...

  6. Ecological genomics of Boechera stricta: Identification of a QTL controlling the allocation of methionine- vs branched-chain amino acid-derived glucosinolates and levels of insect herbivory

    NARCIS (Netherlands)

    Schranz, M.E.; Manzaneda, A.J.; Windsor, A.J.; Clauss, M.; Mitchell-Olds, T.

    2009-01-01

    In the Brassicaceae, glucosinolates influence the feeding, reproduction and development of many insect herbivores. Glucosinolate production and effects on herbivore feeding have been extensively studied in the model species, Arabidopsis thaliana and Brassica crops, both of which constitutively produ

  7. Diversified glucosinolate metabolism

    DEFF Research Database (Denmark)

    Frisch, Tina; Motawie, Mohammed Saddik; Olsen, Carl Erik

    2015-01-01

    Alliaria petiolata (garlic mustard, Brassicaceae) contains the glucosinolate sinigrin as well as alliarinoside, a γ-hydroxynitrile glucoside structurally related to cyanogenic glucosides. Sinigrin may defend this plant against a broad range of enemies, while alliarinoside confers resistance...

  8. Crossfit analysis: a novel method to characterize the dynamics of induced plant responses

    NARCIS (Netherlands)

    Jansen, J.J.; Van Dam, N.M.; Hoefsloot, H.C.J.; Smilde, A.K.

    2009-01-01

    Background Many plant species show induced responses that protect them against exogenous attacks. These responses involve the production of many different bioactive compounds. Plant species belonging to the Brassicaceae family produce defensive glucosinolates, which may greatly influence their favor

  9. Crossfit analysis: a novel method to characterize the dynamics of induced plant responses

    NARCIS (Netherlands)

    Jansen, J.J.; van Dam, N.M.; Hoefsloot, H.C.J.; Smilde, A.K.

    2009-01-01

    Background: Many plant species show induced responses that protect them against exogenous attacks. These responses involve the production of many different bioactive compounds. Plant species belonging to the Brassicaceae family produce defensive glucosinolates, which may greatly influence their favo

  10. Environ: E00816 [KEGG MEDICUS

    Lifescience Database Archive (English)

    Full Text Available E00816 Maca Medicinal herb Glucosinalbin, Benzyl isothiocyanate [CPD:C03098], Macaridine, Linoleate [CPD:C01595], Phytosterol, L-Arginine [CPD:C00062] [DR:D02982], B vitamins, Ascorbate [CPD:C00072], Iron [CPD:C00023], Calcium [CPD:C00076], Zinc [CPD:C00038] Lepidium meyenii [TAX:153348] Brassicaceae (mustard family) Maca tuber Medicinal herbs [BR:br08322] Dicot plants: rosids Brassicaceae (mustard family) E00816 Maca ...

  11. Isolation and identification of 4-a-rhamnosyloxy benzyl glucosinolate in Noccaea caerulescens showing intraspecific variation

    NARCIS (Netherlands)

    Graaf, de R.M.; Krosse, S.; Swolfs, A.E.M.; Brinke, te E.; Prill, N.; Leimu, R.; Galen, van P.M.; Wang, Y.; Aarts, M.G.M.; Dam, van N.M.

    2015-01-01

    Glucosinolates are secondary plant compounds typically found in members of the Brassicaceae and a few other plant families. Usually each plant species contains a specific subset of the ~130 different glucosinolates identified to date. However, intraspecific variation in glucosinolate profiles is com

  12. Environ: E00363 [KEGG MEDICUS

    Lifescience Database Archive (English)

    Full Text Available oria [TAX:161756], Isatis indigotica [TAX:161756] Fabaceae (pea family) Indigofera, Acanthaceae (acanthus fa...mily) Strobilanthes, Polygonaceae (buckwheat family) Polygonum, Brassicaceae (mus...tard family) Isatis extract (dried) Crude drugs [BR:br08305] Dicot plants: rosids Fabaceae (pea family) E00363 Indigo ...

  13. DIETARY ISOTHIOCYANATE IBERIN INHIBITS GROWTH AND INDUCES APOPTOSIS IN HUMAN GLIOBLASTOMA CELLS

    Science.gov (United States)

    In this study, we evaluated the antiproliferative and proapoptotic effects of the isothiocyanate iberin, a bioactive agent in Brassicaceae species, in human glioblastoma cells. The human glioblastoma cell cultures were treated with different concentrations of iberin and tested for growth inhibition...

  14. Biotechnology for improving hydroxy fatty acid production in lesquerella

    Science.gov (United States)

    P Lesquerella [Physaria fendleri (A. Gray)], formerly Lesquerella fendleri, (Brassicaceae), being developed as a new industrial oilseed crop in the southwestern region of the United States, is valued for its unusual hydroxy fatty acid (HFA) in seed. The majority of HFA in lesquerella is lesquerolic...

  15. The Impact of the Absence of Aliphatic Glucosinolates on Insect Herbivory in Arabidopsis

    NARCIS (Netherlands)

    Beekwilder, J.; van Leeuwen, W.; Van Dam, N.M.; Bertossi, M.; Grandi, V.; Mizzi, L.; Soloviev, M.; Szabados, L.; Molthoff, J.W.; Schipper, B.; Verbocht, H.; de Vos, R.C.H.; Morandini, P.; Aarts, M.G.M.; Bovy, A.

    2008-01-01

    Aliphatic glucosinolates are compounds which occur in high concentrations in Arabidopsis thaliana and other Brassicaceae species. They are important for the resistance of the plant to pest insects. Previously, the biosynthesis of these compounds was shown to be regulated by transcription factors MYB

  16. Phloem-specific resistance in Brassica oleracea against the whitefly Aleyrodes proletella

    NARCIS (Netherlands)

    Broekgaarden, C.; Riviere, P.; Steenhuis-Broers, M.M.; Cuenca, M.; Kos, M.; Vosman, B.

    2012-01-01

    The cabbage whitefly [Aleyrodes proletella L. (Hemiptera: Aleyrodidae)] is becoming a serious pest in Brassica oleracea L. (Brassicaceae) crops. However, almost nothing is known about the interaction of this insect with its host plants. Previous studies have shown differences in the natural occurren

  17. Aggregation and foraging behavior of imported cabbageworm (Lepidoptera: pieridae) adults on blue vervain flowers

    Science.gov (United States)

    The imported cabbageworm [Pieris rapae (L.) (Lepidoptera: Pieridae)], also known as the cabbage white butterfly, is an important specialized pest on cruciferous plants (Brassicales: Brassicaceae) worldwide. an unusual aggregation of the cabbage white butterflies was observed on a patch of flowering...

  18. Incorporation of brassica seed meal soil amendment and wheat cultivation for control of macrophomina phaseolina in strawberry

    Science.gov (United States)

    Macrophomina phaseolina is the cause of charcoal rot, a disease of emerging importance in strawberry production systems. Brassicaceae seed meals (SM) and prior cultivation of soils with wheat, were evaluated for the capacity to suppress charcoal rot of strawberry and to determine the relative contri...

  19. Camelina uses, genetics, genomics, production and management

    Science.gov (United States)

    Camelina [Camelina sativa L. Crantz] is an annual oilseed crop in the Brassicaceae family that has been cultivated since 4000 BC. Recently, interest in its oil and meal and the products developed from it have increased research in this crop. This renewed interest is evidenced by the tremendous incre...

  20. Evaluative Testing of 5LA3421: A Multicomponent Prehistoric and Historic Site, Pinon Canyon Maneuver Site, Las Animas County, Colorado

    Science.gov (United States)

    2004-05-01

    thistle), Brassicaceae (Mustard Family), Cyperaceae ( Sedge Family), Ephedra (joint fir), Eriogonum (desert buckwheat), Fabaceae (Bean Family...Family Cheno-Am Goosefoot, Pigweed Cyperaceae Sedge Family Ephedra nevadensis-type Joint Fir, Mormon Tea Ephedra torreyana-type Joint Fir, Mormon Tea...sping Asteraceae, Cyperaceae , Eriogonum, Fabaceae, Platyopuntia, Polygonaceae, Typha and Yucca, while arboreal taxa are represented by Picea, Quercus, and

  1. Interactions between atmospheric and pedospheric sulfur nutrition : Impact of short-term H2S exposure on the uptake and distribution of S-35-sulfate in roots and shoots of curly kale (Brassica oleracea L.)

    NARCIS (Netherlands)

    Wonisch, A; Weidner, W; Tausz, M; Westerman, S; De Kok, LJ; Grill, D

    2005-01-01

    Curlykale (Brassica oleracea L., Brassicaceae) was exposed to 0 and 400 nl l(-1) H2S and simultaneously transferred to a 25% Hoagland nutrient solution containing S-35-sulfate for 24 h. H2S exposure hardly affected the contents of the different sulfur pools, but resulted in a decrease in the level o

  2. Evidence for suppression of immunity as a driver for genomic introgressions and host range expansion in races of Albugo candida, a generalist parasite

    DEFF Research Database (Denmark)

    McMullan, Mark; Gardiner, Anastasia; Bailey, Kate;

    2015-01-01

    How generalist parasites with wide host ranges can evolve is a central question in parasite evolution. Albugo candida is an obligate biotrophic parasite that consists of many physiological races that each specialize on distinct Brassicaceae host species. By analyzing genome sequence assemblies of......, Darwin's finches, sunflowers and cichlid fishes, and the implications of introgression for pathogen evolution in an agro-ecological environment....

  3. Growth and metal accumulation of an Alyssum murale nickel hyperaccumulator ecotype co-cropped with Alyssum montanum or perennial ryegrass in serpentine soil

    Science.gov (United States)

    More than 400 plant species naturally accumulate high levels of metals such as Cd, Cu, Co, Mn, Ni, and Zn. The genus Alyssum (Brassicaceae) contains the greatest number of reported Ni hyperaccumulators (50), many of which can achieve 3 wt% Ni in dry leaves. Some Alyssum hyperaccumulators are viabl...

  4. New floristic records in the Balkans: 8

    DEFF Research Database (Denmark)

    Biel, Burkhard; Tan, Kit

    2008-01-01

    ew chorological data are presented for 90 species and subspecies from Bulgaria (records no. 49-52), Greece (2-36, 53-90) and Turkey-in-Europe (1, 37-48). The taxa belong to the following families: Apiaceae (21), Araceae (87), Asteraceae (5-9, 22-26, 82), Boraginaceae (53, 83), Brassicaceae (54...

  5. New floristic records in the Balkans: 7

    DEFF Research Database (Denmark)

    Tan, Kit; Issigoni, Margarita

    2008-01-01

    , 100), Asclepiadaceae (106), Asteraceae (4, 5, 20-25, 86, 87, 95, 96, 101), Berberidaceae (73), Boraginaceae (26), Brassicaceae (27-29, 97), Caryophyllaceae (30, 31), Chenopodiaceae (32, 33), Convolvulaceae (6), Crassulaceae (88), Cucurbitaceae (34), Cupressaceae (105), Cyperaceae (13-15, 51...

  6. New floristic records in the Balkans: 8

    DEFF Research Database (Denmark)

    Biel, Burkhard; Tan, Kit

    2008-01-01

    New chorological data are presented for 90 species and subspecies from Bulgaria (records no. 49-52), Greece (2-36, 53-90) and Turkey-in-Europe (1, 37-48). The taxa belong to the following families: Apiaceae (21), Araceae (87), Asteraceae (5-9, 22-26, 82), Boraginaceae (53, 83), Brassicaceae (54...

  7. New floristic records in the Balkans: 9

    DEFF Research Database (Denmark)

    Tan, Kit; Raabe, Uwe

    2008-01-01

    (16), Aristolochiaceae (17), Asclepiaceae (18), Aspleniaceae (9-12), Asteraceae (44, 45, 50-54, 69, 76), Balsaminaceae (19), Boraginaceae (49), Brassicaceae (20, 70, 77, 83), Campanulaceae (46, 84), Caryophyllaceae (21, 55, 85, 86), Chenopodiaceae (22, 23), Cistaceae (24, 87), Convolvulaceae (25...

  8. New floristic records in the Balkans: 17

    DEFF Research Database (Denmark)

    2011-01-01

    , 103), Aspleniaceae (94), Asteraceae (5, 23, 26–31, 70, 74–76, 96, 124–127, 131–134), Betulaceae (109), Boraginaceae (32), Brassicaceae (24, 33–35, 71, 77, 135), Campanulaceae (36, 78, 79), Caryophyllaceae (6, 37–40, 72, 80, 114, 136, 137), Chenopodiaceae (7, 97, 128), Cupressaceae (108), Cyperaceae...

  9. New floristic records in the Balkans: 6

    DEFF Research Database (Denmark)

    Biel, Burkhard; Tan, Kit

    2007-01-01

    ), Anacardiaceae (80), Apiaceae (2, 58), Asteraceae (3, 4, 61, 62, 83, 117, 123-127), Boraginaceae (5, 63, 84-86), Brassicaceae (64), Campanulaceae (45, 46, 118), Caprifoliaceae (6), Caryophyllaceae (51, 59, 87, 119), Chenopodiaceae (7, 8, 136), Cistaceae (88, 89), Convolvulaceae (9, 65), Cupressaceae (116...

  10. New floristic records in the Balkans: 9

    DEFF Research Database (Denmark)

    Biel, Burkhard; Tan, Kit

    2008-01-01

    ), Apiaceae (16), Aristolochiaceae (17), Asclepiaceae (18), Aspleniaceae (9-12), Asteraceae (44, 45, 50-54, 69, 76), Balsaminaceae (19), Boraginaceae (49), Brassicaceae (20, 70, 77, 83), Campanulaceae (46, 84), Caryophyllaceae (21, 55, 85, 86), Chenopodiaceae (22, 23), Cistaceae (24, 87), Convolvulaceae (25...

  11. New floristic records in the Balkans: 1

    DEFF Research Database (Denmark)

    2006-01-01

    ), Amaryllidaceae (38), Apiaceae (17, 18, 47, 80, 83, 84), Asclepiadaceae (85), Asteraceae (29, 31, 86-91), Brassicaceae (3, 48, 70), Campanulaceae (49, 71, 76), Cannabaceae (72), Caprifoliaceae (4), Caryophyllaceae (19, 20, 32, 33, 50-52), Chenopodiaceae (5), Cyperaceae (28, 78), Dipsacaceae (34, 53, 54), Fabaceae...

  12. New floristic records in the Balkans: 12

    DEFF Research Database (Denmark)

    2009-01-01

    ), Alismataceae (90), Amaranthaceae (15, 16), Amaryllidaceae (32, 58-60), Apiaceae (1, 2, 17, 40, 41, 92), Asclepiadaceae (93), Aspleniaceae (38), Asteraceae (3-5, 18-21, 42, 83, 84, 94-99), Boraginaceae (69), Brassicaceae (43, 74), Campanulaceae (63), Caryophyllaceae (44, 75), Chenopodiaceae (45, 85, 86...

  13. New floristic records in the Balkans: 10

    DEFF Research Database (Denmark)

    2009-01-01

    (53, 54), Asteraceae (9-11, 17-22, 24, 31-38, 55, 75, 97), Athyriaceae (4, 5), Berberidaceae (76), Boraginaceae (77-79), Brassicaceae (25, 46, 56), Campanulaceae (39, 57, 90), Cannabinaceae (58), Caprifoliaceae (59), Caryophyllaceae (26, 60, 98), Chenopodiaceae (12), Cupressaceae (1), Cyperaceae (65...

  14. Temporal and host-related variation in frequencies of genes that enable Phyllotreta nemorum to utilize a novel host plant, Barbarea vulgaris

    NARCIS (Netherlands)

    Nielsen, J.K.; Jong, de P.W.

    2005-01-01

    The flea beetle, Phyllotreta nemorum L. (Coleoptera: Chrysomelidae), is an intermediate specialist feeding on a small number of plants within the family Brassicaceae. The most commonly used host plant is Sinapis arvensis L., whereas the species is found more rarely on Cardaria draba (L.) Desv., Barb

  15. Genetic differentiation between resistance phenotypes in the phytophagous flea beetle, Phyllotreta nemorum

    NARCIS (Netherlands)

    Jong, de P.W.; Breuker, C.J.; Vos, de H.; Vermeer, K.M.C.A.; Oku, K.; Verbaarschot, P.G.H.; Nielsen, J.K.; Brakefield, P.M.

    2009-01-01

    The flea beetle Phyllotreta nemorum L. (Coleoptera: Chrysomelidae) is genetically polymorphic for resistance against the defences of one of its host plants, Barbarea vulgaris R.Br. (Brassicales: Brassicaceae). Whereas resistant flea beetles are able to use B. vulgaris as well as other cruciferous pl

  16. AFLP markers for the R-gene in the flea beetle, Phyllotreta nemorum, conferring resistance to defenses in Barbarea vulgaris

    NARCIS (Netherlands)

    Breuker, C.J.; Victoir, K.; Jong, de P.W.; Meijden, van der E.; Brakefield, P.M.; Vrieling, K.

    2005-01-01

    A so-called R-gene renders the yellow-striped flea beetle Phyllotreta nemorum L. (Coleoptera: Chrysomelidae: Alticinae) resistant to the defenses of the yellow rocket Barbarea vulgaris R.Br. (Brassicacea) and enables it to use it as a host plant in Denmark. In this study, genetic markers for an auto

  17. Lubricants and functional fluids from lesquerella oil

    Science.gov (United States)

    Lesquerella fendleri is an oilseed crop belonging to the Brassicaceae (mustard) family that is native to the desert of the southwestern United States. The interest in this crop is due to the high level of hydroxy fatty acids (HFA) in the oil. The seed contains 33% oil, 23% protein, and 15% gums. The...

  18. An atlas of over 90.000 conserved noncoding sequences provides insight into crucifer regulatory regions

    NARCIS (Netherlands)

    Haudry, A.; Platts, A.E.; Vello, E.; Hoen, D.R.; Leclerq, M.; Williamson, R.J.; Forczek, E.; Joly-Lopez, Z.; Steffen, J.G.; Hazzouri, K.M.; Dewar, K.; Stinchcombe, J.R.; Schoen, D.J.; Wang, X.; Schmutz, J.; Town, C.D.; Edger, P.P.; Pires, J.C.; Schumaker, K.S.; Jarvis, D.E.; Mandakova, T.; Lysak, M.; Bergh, van den E.; Schranz, M.E.; Harrison, P.M.

    2013-01-01

    Despite the central importance of noncoding DNA to gene regulation and evolution, understanding of the extent of selection on plant noncoding DNA remains limited compared to that of other organisms. Here we report sequencing of genomes from three Brassicaceae species (Leavenworthia alabamica, Sisymb

  19. Cruciferous vegetables and colo-rectal cancer.

    OpenAIRE

    Lynn, Anthony; Collins, Andrew; Fuller, Zoë; Hillman, Kevin; Ratcliffe, Brian

    2006-01-01

    KEYWORDS - CLASSIFICATION: administration & dosage;Anticarcinogenic Agents;Apoptosis;Brassicaceae;chemically induced;chemistry;Cell Division;Colorectal Neoplasms;drug effects;dietary modulation of cancer & cancer biomarkers;Evaluation;Food Handling;Glucosinolates;Glycoside Hydrolases;Humans;Hydrolases;Isothiocyanates;metabolism;methods;pharmacology;prevention & control;Research. Cruciferous vegetables have been studied extensively for their chemoprotective effects. Although they contain ma...

  20. Allelochemical Control of Non-Indigenous Invasive Plant Species Affecting Military Testing and Training Activities

    Science.gov (United States)

    2010-10-01

    Dalmation toadflax Scrophulariaceae I F Potentilla recta Sulphur cinquefoil Rosaceae I F Sisymbrium altissimum Tall tumblemustard Brassicaceae I F...105 9.09 tap Fabaceae Potentilla arguta tall cinquefoil weak high 8,112 9.09 tap Rosaceae total seeds per gram 22145 Stipa

  1. QTL analysis of cadmium and zinc accumulation in the heavy metal hyperaccumulator Thlaspi caerulescens

    NARCIS (Netherlands)

    Deniau, A.X.; Pieper, B.; Bookum, ten W.M.; Lindhout, P.; Aarts, M.G.M.

    2006-01-01

    Thlaspi caerulescens (Tc; 2n = 14) is a natural Zn, Cd and Ni hyperaccumulator species belonging to the Brassicaceae family. It shares 88% DNA identity in the coding regions with Arabidopsis thaliana (At) (Rigola et al. 2006). Although the physiology of heavy metal (hyper)accumulation has been inten

  2. Development and characterization of 11 microsatellite markers in the root-gall-forming weevil, Ceutorhynchus assimilis (Coleoptera: Curculionidae)

    Science.gov (United States)

    The host race of Ceutorhynchus assimilis (Coleoptera: Curculionidae) that specifically develops on Lepidium draba (Brassicales: Brassicaceae), an invasive weed in North America, is being considered for use as a biocontrol agent. Because there are other races that attack other plants, it is important...

  3. Can we “cultivate” erucic acid in southern Europe?

    Directory of Open Access Journals (Sweden)

    Federica Zanetti

    Full Text Available Over the last fifteen years, considerable progress has been made in the field of “green chemistry”, as regards both research aspects and market development. In particular, extraction of erucic acid (C22:1 from plants and its industrial applications have received increasing attention. At present, known species producing oils yielding large quantities of erucic acid belong, with few exceptions, to the Brassicaceae family. Among these, the two major sources of erucic acid in the world are HEAR (High Erucic Acid Rapeseed, Brassica napus var. oleifera and crambe (Crambe abyssinica, both mainly cultivated in the USA. Their cultivation has also recently been considered and extended to southern Europe, supported by specific research projects. The quantity of erucic acid in Brassicaceae oils ranges greatly, from 55% in Crambe abyssinica to nearly zero in some varieties of Brassica napus var. oleifera. Even more differentiated and peculiar to each species and variety is adaptability to specific climatic and soil conditions. In this regard, the major limitation to the cultivation of some interesting Brassicaceae species, crambe in particular, is their poor tolerance to cold. Among Brassicaceae producing erucic acid, the less frequently cultivated species, such as Brassica juncea and B. carinata, if grown in areas with relatively mild winters, may give yields of seed and oil similar to those of the most productive rapeseed genotypes. Within this framework, in order to achieve high production of erucic acid, it is essential to identify the most productive genotypes, among available species, for each environment. In this report, seed and oil productions of some important Brassicaceae species for extraction of erucic acid, derived from 15 years of field trials in northern Italy, are discussed in relation to the possibility of autumn or spring sowing.

  4. New records in vascular plants alien to Kyrgyzstan

    Directory of Open Access Journals (Sweden)

    Georgy Lazkov

    2014-01-01

    Full Text Available A series of brief notes on distribution of vascular plants alien to Kyrgyzstan is presented. A further expansion of Anthemis ruthenica (Asteraceae, Crambe orientalis (Brassicaceae and Salvia aethiopis (Lamiaceae in northern and northwestern Kyrgyzstan is recorded. The first record of Chenopodium vulvaria (Amaranthaceae from the northern side of Kyrgyz Range is confirmed, and the species was found for the second time in Alay Range. The ephemerous occurrence of Hirschfeldia incana (Brassicaceae in Central Asia is recorded for the first time from Fergana Range. Tragus racemosus (Poaceae is first recorded from the Chüy Depression as an ephemerous alien. Arrhenatherum elatius, escaped from cultivation and locally established, is new to the country. The second record of established occurrence of Centaurea solstitialis (Asteraceae and an ephemerous occurrence of Glaucium corniculatum (Papaveraceae are presented. Complete information is collected about the occurrence of every mentioned species in Kyrgyzstan.

  5. A greenhouse and field-based study to determine the accumulation of arsenic in common homegrown vegetables grown in mining-affected soils.

    Science.gov (United States)

    Ramirez-Andreotta, Monica D; Brusseau, Mark L; Artiola, Janick F; Maier, Raina M

    2013-01-15

    The uptake of arsenic by plants from contaminated soils presents a health hazard that may affect home gardeners neighboring contaminated environments. A controlled greenhouse study was conducted in parallel with a co-created citizen science program (home garden experiment) to characterize the uptake of arsenic by common homegrown vegetables near the Iron King Mine and Humboldt Smelter Superfund site in southern Arizona. The greenhouse and home garden arsenic soil concentrations varied considerably, ranging from 2.35 to 533 mg kg(-1). In the greenhouse experiment four vegetables were grown in three different soil treatments and in the home garden experiment a total of 63 home garden produce samples were obtained from 19 properties neighboring the site. All vegetables accumulated arsenic in both the greenhouse and home garden experiments, ranging from 0.01 to 23.0 mg kg(-1) dry weight. Bioconcentration factors were determined and show that arsenic uptake decreased in the order: Asteraceae>Brassicaceae>Amaranthaceae>Cucurbitaceae>Liliaceae>Solanaceae>Fabaceae. Certain members of the Asteraceae and Brassicaceae plant families have been previously identified as hyperaccumulator plants, and it can be inferred that members of these families have genetic and physiological capacity to accumulate, translocate, and resist high amounts of metals. Additionally, a significant linear correlation was observed between the amount of arsenic that accumulated in the edible portion of the plant and the arsenic soil concentration for the Asteraceae, Brassicaceae, Amaranthaceae, and Fabaceae families. The results suggest that home gardeners neighboring mining operations or mine tailings with elevated arsenic levels should be made aware that arsenic can accumulate considerably in certain vegetables, and in particular, it is recommended that gardeners limit consumption of vegetables from the Asteraceae and Brassicaceae plant families.

  6. The genome sequence of Barbarea vulgaris facilitates the study of ecological biochemistry

    DEFF Research Database (Denmark)

    Byrne, Stephen L.; Erthmann, Pernille Østerbye; Agerbirk, Niels

    2017-01-01

    The genus Barbarea has emerged as a model for evolution and ecology of plant defense compounds, due to its unusual glucosinolate profile and production of saponins, unique to the Brassicaceae. One species, B. vulgaris, includes two ‘types’, G-type and P-type that differ in trichome density, and t...... deter larvae to the extent that they die. The B. vulgaris genome will promote the study of mechanisms in ecological biochemistry to benefit crop resistance breeding....

  7. CONTRIBUTIONS TO THE FLORA OF EUROPEAN TURKEY

    OpenAIRE

    G. DALGIÇ, F. DANE

    2015-01-01

    Alyssum hinrrrtnm Bieb. (Brassicaceae), Pistacia terebinthus L. subsp. palaediw(Boiss.) Engler (Anacardiaceae) Lamirim album L. (Lamiaceae) and Eziphorbianlaclaclada Boiss. (Er(phor6iaceae) have been added to the flora of European Turkey, following the collection of specimens from Al(E) Edime and Canakkale. In addition, two taxa, Pistacia terebinthus subsp. palaestina and Eriphorbia macroclada represent new records for the flora of Europe.Key words: Flora of European Turkey, flora of Europe, ...

  8. Quantitative divergence of the bacterial root microbiota in Arabidopsis thaliana relatives

    OpenAIRE

    Schlaeppi, K.; Dombrowski, N.; Oter, R. G.; Ver Loren van Themaat, E.; Schulze-Lefert, P

    2014-01-01

    All plants carry distinctive bacterial communities on and inside organs such as roots and leaves, collectively called the plant microbiota. How this microbiota diversifies in related plant species is unknown. We investigated the diversity of the bacterial root microbiota in the Brassicaceae family, including three Arabidopsis thaliana ecotypes, its sister species Arabidopsis halleri and Arabidopsis lyrata, and Cardamine hirsuta. We show that differences in root microbiota profiles between the...

  9. Effects of sex, host-plant deprivation and presence of conspecific immatures on the cannibalistic behavior of wild Ascia monuste orseis (Godart) (Lepidoptera, Pieridae)

    OpenAIRE

    SANTANA, Alessandra F. K.; Zago,Rosana C.; ZUCOLOTO, Fernando S.

    2011-01-01

    Effects of sex, host-plant deprivation and presence of conspecific immatures on the cannibalistic behavior of wild Ascia monuste orseis (Godart) (Lepidoptera, Pieridae). The specialist cabbage caterpillar Ascia monuste orseis (Lepidoptera, Pieridae) feeds on plants of the Brassicaceae family, but may eventually ingest conspecific eggs and larvae during the larval stage. The present study examines feeding behavior of 4th and 5th instar cabbage caterpillars in relation to sex, host-plant depriv...

  10. Evolution of fruit development genes in flowering plants

    Directory of Open Access Journals (Sweden)

    Natalia ePabón-Mora

    2014-06-01

    Full Text Available The genetic mechanisms regulating dry fruit development and opercular dehiscence have been identified in Arabidopsis thaliana. In the bicarpellate silique, valve elongation and differentiation is controlled by FRUITFULL (FUL that antagonizes SHATTERPROOF1-2 (SHP1/ SHP2 and INDEHISCENT (IND at the dehiscence zone where they control normal lignification. SHP1/2 are also repressed by REPLUMLESS (RPL, responsible for replum formation. Similarly, FUL indirectly controls two other factors ALCATRAZ (ALC and SPATULA (SPT that function in the proper formation of the separation layer. FUL and SHP1/2 belong to the MADS-box family, IND and ALC belong to the bHLH family and RPL belongs to the homeodomain family, all of which are large transcription factor families. These families have undergone numerous duplications and losses in plants, likely accompanied by functional changes. Functional analyses of homologous genes suggest that this network is fairly conserved in Brassicaceae and less conserved in other core eudicots. Only the MADS box genes have been functionally characterized in basal eudicots and suggest partial conservation of the functions recorded for Brassicaceae. Here we do a comprehensive search of SHP, IND, ALC, SPT and RPL homologs across core-eudicots, basal eudicots, monocots and basal angiosperms. Based on gene-tree analyses we hypothesize what parts of the network for fruit development in Brassicaceae, in particular regarding direct and indirect targets of FUL, might be conserved across angiosperms.

  11. Evolution of fruit development genes in flowering plants.

    Science.gov (United States)

    Pabón-Mora, Natalia; Wong, Gane Ka-Shu; Ambrose, Barbara A

    2014-01-01

    The genetic mechanisms regulating dry fruit development and opercular dehiscence have been identified in Arabidopsis thaliana. In the bicarpellate silique, valve elongation and differentiation is controlled by FRUITFULL (FUL) that antagonizes SHATTERPROOF1-2 (SHP1/SHP2) and INDEHISCENT (IND) at the dehiscence zone where they control normal lignification. SHP1/2 are also repressed by REPLUMLESS (RPL), responsible for replum formation. Similarly, FUL indirectly controls two other factors ALCATRAZ (ALC) and SPATULA (SPT) that function in the proper formation of the separation layer. FUL and SHP1/2 belong to the MADS-box family, IND and ALC belong to the bHLH family and RPL belongs to the homeodomain family, all of which are large transcription factor families. These families have undergone numerous duplications and losses in plants, likely accompanied by functional changes. Functional analyses of homologous genes suggest that this network is fairly conserved in Brassicaceae and less conserved in other core eudicots. Only the MADS box genes have been functionally characterized in basal eudicots and suggest partial conservation of the functions recorded for Brassicaceae. Here we do a comprehensive search of SHP, IND, ALC, SPT, and RPL homologs across core-eudicots, basal eudicots, monocots and basal angiosperms. Based on gene-tree analyses we hypothesize what parts of the network for fruit development in Brassicaceae, in particular regarding direct and indirect targets of FUL, might be conserved across angiosperms.

  12. Host plant suitability and feeding preferences of the grapevine pest Abagrotis orbis (Lepidoptera: Noctuidae).

    Science.gov (United States)

    Mostafa, A M; Lowery, D T; Jensen, L B M; Deglow, E K

    2011-12-01

    Thirteen plant species were tested for their suitability as hosts for Abagrotis orbis (Grote), a climbing cutworm pest of grapevines in British Columbia. Choice tests were also conducted to investigate larval feeding preferences for the Brassicaceae species joi choi, Brassica rapa variety. Chinensis L., spring draba; Draba verna L.; and shepherd's purse, Capsella bursa-pastoris (L.) Medik; compared with postdormant buds of grape, Vitis vinifera L. (Vitaceae), and leaves of nine other plant species from several families. Results showed that tah tsai, Brassica rapa L. variety rosularis (M. Tsen & S. H. Lee) Hanelt (Brassicaceae), is a superior host for A. orbis based on shorter time to adult eclosion, heavier pupae, and higher rates of survival. Later-instar larvae died when fed draba, whereas those reared on shepherd's purse did not survive beyond the third instar. White clover, Trifolium repens L. (Fabaceae), and grape leaves were unsuitable hosts throughout development. Fifth-instar A. orbis preferred plants of the Brassicaceae family, dandelion, Taraxacum officinale Weber (Asteraceae), and strawberry, Fragaria sp. L. (Rosaceae), compared with postdormant grape buds. The results of this study suggest that the winter annual mustards draba and shepherd's purse that often grow abundantly in vine rows might help reduce climbing cutworm damage to the buds of grapevines.

  13. Lineage-specific evolution of Methylthioalkylmalate synthases (MAMs involved in glucosinolates biosynthesis

    Directory of Open Access Journals (Sweden)

    Jifang eZhang

    2015-02-01

    Full Text Available Methylthioalkylmalate synthases (MAMs encoded by MAM genes are central to the diversification of the glucosinolates, which are important secondary metabolites in Brassicaceae species. However, the evolutionary pathway of MAM genes is poorly understood. We analyzed the phylogenetic and synteny relationships of MAM genes from 13 sequenced Brassicaceae species. Based on these analyses, we propose that the syntenic loci of MAM genes, which underwent frequent tandem duplications, divided into two independent lineage-specific evolution routes and were driven by positive selection after the divergence from Aethionema arabicum. In the lineage I species Capsella rubella, Camelina sativa, Arabidopsis lyrata, and A. thaliana, the MAM loci evolved three tandem genes encoding enzymes responsible for the biosynthesis of aliphatic glucosinolates with different carbon chain-lengths. In lineage II species, the MAM loci encode enzymes responsible for the biosynthesis of short-chain aliphatic glucosinolates. Our proposed model of the evolutionary pathway of MAM genes will be useful for understanding the specific function of these genes in Brassicaceae species.

  14. Biogeography and diversification of Brassicales: A 103million year tale.

    Science.gov (United States)

    Cardinal-McTeague, Warren M; Sytsma, Kenneth J; Hall, Jocelyn C

    2016-06-01

    Brassicales is a diverse order perhaps most famous because it houses Brassicaceae and, its premier member, Arabidopsis thaliana. This widely distributed and species-rich lineage has been overlooked as a promising system to investigate patterns of disjunct distributions and diversification rates. We analyzed plastid and mitochondrial sequence data from five gene regions (>8000bp) across 151 taxa to: (1) produce a chronogram for major lineages in Brassicales, including Brassicaceae and Arabidopsis, based on greater taxon sampling across the order and previously overlooked fossil evidence, (2) examine biogeographical ancestral range estimations and disjunct distributions in BioGeoBEARS, and (3) determine where shifts in species diversification occur using BAMM. The evolution and radiation of the Brassicales began 103Mya and was linked to a series of inter-continental vicariant, long-distance dispersal, and land bridge migration events. North America appears to be a significant area for early stem lineages in the order. Shifts to Australia then African are evident at nodes near the core Brassicales, which diverged 68.5Mya (HPD=75.6-62.0). This estimated age combined with fossil evidence, indicates that some New World clades embedded amongst Old World relatives (e.g., New World capparoids) are the result of different long distance dispersal events, whereas others may be best explained by land bridge migration (e.g., Forchhammeria). Based on these analyses, the Brassicaceae crown group diverged in Europe/Northern Africa in the Eocene, circa 43.4Mya (HPD=46.6-40.3) and Arabidopsis separated from close congeners circa 10.4Mya. These ages fall between divergent dates that were previously published, suggesting we are slowly converging on a robust age estimate for the family. Three significant shifts in species diversification are observed in the order: (1) 58Mya at the crown of Capparaceae, Cleomaceae and Brassicaceae, (2) 38Mya at the crown of Resedaceae+Stixis clade, and

  15. Selenium hyperaccumulators harbor a diverse endophytic bacterial community characterized by high selenium resistance and plant growth promoting properties

    Directory of Open Access Journals (Sweden)

    Martina eSura - de Jong

    2015-03-01

    Full Text Available Selenium (Se-rich plants may be used to provide dietary Se to humans and livestock, and also to clean up Se-polluted soils or waters. This study focused on endophytic bacteria of plants that hyperaccumulate selenium (Se to 0.5-1% of dry weight. Terminal restriction fragment length polymorphism (T-RFLP analysis was used to compare the diversity of endophytic bacteria of hyperaccumulators Stanleya pinnata (Brassicaceae and Astragalus bisulcatus (Fabaceae with those from related non-accumulators Physaria bellii (Brassicaceae and Medicago sativa (Fabaceae collected on the same, seleniferous site. Hyperaccumulators and non-accumulators showed equal T-RF diversity. Parsimony analysis showed that T-RFs from individuals of the same species were more similar to each other than to those from other species, regardless of plant Se content or spatial proximity. Cultivable endophytes from hyperaccumulators S. pinnata and A. bisulcatus were further identified and characterized. The 66 bacterial morphotypes were shown by MS MALDI-TOF Biotyper analysis and 16S rRNA gene sequencing to include strains of Bacillus, Pseudomonas, Pantoea, Staphylococcus, Paenibacillus, Advenella, Arthrobacter and Variovorax. Most isolates were highly resistant to selenate and selenite (up to 200 mM and all could reduce selenite to red elemental Se, reduce nitrite and produce siderophores. Seven isolates were selected for plant inoculation and found to have plant growth promoting properties, both in pure culture and when co-cultivated with crop species Brassica juncea (Brassicaceae or M. sativa. There were no effects on plant Se accumulation. We conclude that Se hyperaccumulators harbor an endophytic bacterial community in their natural seleniferous habitat that is equally diverse to that of comparable non-accumulators. The hyperaccumulator endophytes are characterized by high Se resistance, capacity to produce elemental Se and plant growth promoting properties.

  16. A Division in PIN-Mediated Auxin Patterning during Organ Initiation in Grasses

    Science.gov (United States)

    O'Connor, Devin L.; Runions, Adam; Sluis, Aaron; Bragg, Jennifer; Vogel, John P.

    2014-01-01

    The hormone auxin plays a crucial role in plant morphogenesis. In the shoot apical meristem, the PIN-FORMED1 (PIN1) efflux carrier concentrates auxin into local maxima in the epidermis, which position incipient leaf or floral primordia. From these maxima, PIN1 transports auxin into internal tissues along emergent paths that pattern leaf and stem vasculature. In Arabidopsis thaliana, these functions are attributed to a single PIN1 protein. Using phylogenetic and gene synteny analysis we identified an angiosperm PIN clade sister to PIN1, here termed Sister-of-PIN1 (SoPIN1), which is present in all sampled angiosperms except for Brassicaceae, including Arabidopsis. Additionally, we identified a conserved duplication of PIN1 in the grasses: PIN1a and PIN1b. In Brachypodium distachyon, SoPIN1 is highly expressed in the epidermis and is consistently polarized toward regions of high expression of the DR5 auxin-signaling reporter, which suggests that SoPIN1 functions in the localization of new primordia. In contrast, PIN1a and PIN1b are highly expressed in internal tissues, suggesting a role in vascular patterning. PIN1b is expressed in broad regions spanning the space between new primordia and previously formed vasculature, suggesting a role in connecting new organs to auxin sinks in the older tissues. Within these regions, PIN1a forms narrow canals that likely pattern future veins. Using a computer model, we reproduced the observed spatio-temporal expression and localization patterns of these proteins by assuming that SoPIN1 is polarized up the auxin gradient, and PIN1a and PIN1b are polarized to different degrees with the auxin flux. Our results suggest that examination and modeling of PIN dynamics in plants outside of Brassicaceae will offer insights into auxin-driven patterning obscured by the loss of the SoPIN1 clade in Brassicaceae. PMID:24499933

  17. Border cells versus border-like cells: are they alike?

    Science.gov (United States)

    Driouich, Azeddine; Durand, Caroline; Cannesan, Marc-Antoine; Percoco, Giuseppe; Vicré-Gibouin, Maité

    2010-09-01

    Roots of many plants are known to produce large numbers of 'border' cells that play a central role in root protection and the interaction of the root with the rhizosphere. Unlike border cells, border-like cells were described only recently in the model plant Arabidopsis thaliana and other Brassicaceae species and very little is known about the functional properties of border-like cells as compared with 'classical' border cells. To stimulate discussion and future research on this topic, the function of border cells and the way border-like cells are organized, maintained, and possibly involved in plant protection is discussed here.

  18. Study of Plant Species Composition of Grasslands in Mugla Village Region (Western Rhodopes, South Bulgaria

    Directory of Open Access Journals (Sweden)

    Plamen S. Stoyanov

    2016-06-01

    Full Text Available The study presents data on the diversity of grass species in the region of the village of Mugla (the Western Rhodopes. One hundred forty-one species of higher plants belonging to 40families were registered. (Apiaceae, Aspleniaceae, Asteraceae, Boraginaceae, Brassicaceae,Campanulaceae, Caryophyllaceae, Cistaceae, Cyperaceae, Dipsacaceae, Equisetaceae, Ericaceae,Euphorbiaceae, Fabaceae, Gentianaceae, Geraniaceae, Gesneriaceae, Hypericaceae, Juncaceae,Lamiaceae, Lemnaceae, Liliaceae, Linaceae, Menyanthaceae, Oleacea, Onagraceae, Orchidaceae,Parnassiaceae, Plantaginaceae, Plumbaginaceae, Poaceae, Polygalaceae, Primulaceae,Ranunculaceae, Rosaceae, Rubiaceae, Saxifragaceae, Scrophulariaceae, Valerianaceae andViolaceae. Their conservation status was presented, as well as medicinal plants.

  19. Carotenoid and polyphenol bioaccessibility and cellular uptake from plum and cabbage varieties.

    Science.gov (United States)

    Kaulmann, Anouk; André, Christelle M; Schneider, Yves-Jacques; Hoffmann, Lucien; Bohn, Torsten

    2016-04-15

    Plum and cabbage are rich in carotenoids and polyphenols. However, their bioactivity depends on their release and intestinal uptake. Four varieties of Brassicaceae (Duchy, Scots Kale, Kale, Kalorama) and Prunus (Cherry Plum, Plum 620, Ersinger, Italian Plum) were studied; bioaccessibility following in vitro digestion, cellular uptake (Caco-2 vs. co-culture cell model: Caco-2:HT-29-MTX (90:10%) and colonic fermentation were determined for carotenoids/polyphenols; the influence of certain kitchen preparations was likewise studied. Carotenoids were non-significantly influenced by the latter, while for polyphenols, boiling and steaming significantly reduced total phenolics (pfuture.

  20. Evolución molecular de los genes Badh

    OpenAIRE

    2004-01-01

    Se hizo un análisis comparativo entre 18 secuencias de aminoácidos de enzimas Betaina Aldehído Deshidrogenasas (BADH), que participan en la síntesis del osmoprotector glicina betaina, en algunas especies vegetales pertenecientes a familias económicamente importantes, como Chenopodiaceae, Amaranthaceae, Brassicaceae, Acanthaceae y Poaceae. El objetivo fue estudiar la evolución molecular de la vía de síntesis de la glicina betaina y de los genes que codifican para las enzimas que en ella partic...

  1. Polvo vegetal para alimentación y protección vegetal y métodos de preparación

    OpenAIRE

    2010-01-01

    La presente invención se refiere a un método de producción de polvo vegetal para su uso en alimentación y protección vegetal, preferiblemente el polvo vegetal se obtiene a partir de vegetales de la familia Brassicaceae (crucíferas). Además, la presente invención también se refiere al polvo vegetal obtenido mediante el procedimiento de la invención y el uso del polvo vegetal para su uso en alimentación y protección vegetal como herbicida e insecticida vegetal. Además...

  2. Characterization of two coexisting pathogen populations of Leptosphaeria spp., the cause of stem canker of brassicas

    Directory of Open Access Journals (Sweden)

    Joanna Kaczmarek

    2012-12-01

    Full Text Available Stem canker of brassicas, also known as blackleg is the most damaging disease of many Brassicaceae. The disease is caused by Leptosphaeria maculans (Desm. Ces et de Not. and L. biglobosa sp. nov., Shoemaker & Brun, which coexist in plants and resulting in disease symptoms and decreased yield, quantity and quality of cultivated vegetables and oilseed rape. The paper presents taxonomic relationships between these coexisting pathogen species, describes particular stages of their life cycles, summarizes the differences between the species, and reviews methods for their identification.

  3. Toxomerus duplicatus Wiedemann, 1830 (Diptera: Syrphidae preying on Microtheca spp. (Coleoptera: Chrysomelidae larvae

    Directory of Open Access Journals (Sweden)

    VS Sturza

    Full Text Available Microtheca spp. (Coleoptera: Chrysomelidae are insect pests primarily related to Brassicaceae crops. In the State of Rio Grande do Sul (RS, southern Brazil, they are found on forage turnip, Raphanus sativus L. var. oleiferus Metzg., which is commonly grown during fall/winter seasons. This work reports the predation of Microtheca spp. larvae by Toxomerus duplicatus Wiedemann, 1830 (Diptera: Syrphidae larvae, on forage turnip crop, in Santa Maria, RS. This register provides new information about Microtheca spp. natural enemies in Brazil, which might be a new option for integrate pest management of these species.

  4. Detecting Site-Specific Physicochemical Selective Pressures: Applications to the Class I HLA of the Human Major Histocompatibility Complex and the SRK of the Plant Sporophytic Self-Incompatibility System

    DEFF Research Database (Denmark)

    Sainudiin, Raazesh; Wong, Wendy Shuk Wan; Yogeeswaran, Krithika;

    2005-01-01

    Models of codon substitution are developed that incorporate physicochemical properties of amino acids. When amino acid sites are inferred to be under positive selection, these models suggest the nature and extent of the physicochemical properties under selection. This is accomplished by first...... plants (Brassicaceae), whose structure is unknown. Through likelihood ratio tests we demonstrate that at some sites, the positively selected MHC and SRK proteins are under physicochemical selective pressures to alter polarity, volume, polarity and/or volume, and charge to various extents. An empirical...

  5. Burdur Yöresi Ballarının Polen Analizi

    Directory of Open Access Journals (Sweden)

    Deniz TAŞKIN

    2009-07-01

    Full Text Available 2004–2005 yılları arasında Burdur ili ve ilçelerinden 20 bal örnegi toplanmıs ve bu örneklerde polen analizi Lieux (1972 ve Maurizio (1951' ya göre Sorkun (1989 tarafından belirtilen yöntemle yapılmıstır. Mikroskobik analiz sonuçlarında 33 farklı familyaya ait 58 takson teshis edilmistir. Centaurea, Compositae, Brassicaceae, Rosaceae, Pimpinella anisum ve Anthriscus taksonları çoğu istasyonda poleni görülen taksonlardır. Dominant polenler, Apiaceae, Pimpinella anisum, Anthriscus, Cardamine, Compositae, Centaurea, Ericaceae ve Dianthus taksonlarına; sekonder polenler, Brassicaceae, Fabaceae, Crepis, Xeranthemum ve Trifolium taksonlarına aittir. İncelenen örnekler içerisinde sadece Burdur( Merkez'dan alınan örnekte dominant polen (Cardamine ve eser polenler (Compositae, Centaurea, Fabaceae, Polygonum, Anthriscus, Scandix, Poaceae, Populus, Rosaceae, Laurus nobilis, Malvaceae, Liliaceae, Caryopyllaceae, Ficaria bulundugu için unifloral (tek çiçek kaynaklı bal olarak belirlenmistir. Geriye kalan 19 bal örneği multifloral bal olarak tanımlanmıstır.

  6. Functional dissection of the PROPEP2 and PROPEP3 promoters reveals the importance of WRKY factors in mediating microbe-associated molecular pattern-induced expression.

    Science.gov (United States)

    Logemann, Elke; Birkenbihl, Rainer P; Rawat, Vimal; Schneeberger, Korbinian; Schmelzer, Elmon; Somssich, Imre E

    2013-06-01

    · In Arabidopsis thaliana, small peptides (AtPeps) encoded by PROPEP genes act as damage-associated molecular patterns (DAMPs) that are perceived by two leucine-rich repeat receptor kinases, PEPR1 and PEPR2, to amplify defense responses. In particular, expression of PROPEP2 and PROPEP3 is strongly and rapidly induced by AtPeps, in response to bacterial, oomycete, and fungal pathogens, and microbe-associated molecular patterns (MAMPs). · The cis-regulatory modules (CRMs) within the PROPEP2 and PROPEP3 promoters that mediate MAMP responsiveness were delineated, employing parsley (Petroselinum crispum) protoplasts and transgenic A. thaliana plants harboring promoter-reporter constructs. By chromatin immunoprecipitation in vivo, DNA interactions with a specific transcription factor were detected. Furthermore, the PHASTCONS program was used to identify conserved regions of the PROPEP3 locus in different Brassicaceae species. · The major MAMP-responsive CRM within the PROPEP2 promoter is composed of several W boxes and an as1/OCS (activation sequence-1/octopine synthase) enhancer element, while in the PROPEP3 promoter the CRM is comprised of six W boxes. The WRKY33 transcription factor binds in vivo to these promoter regions in a MAMP-dependent manner. Both the position and orientation of the six W boxes are conserved within the PROPEP3 promoters of four other Brassicaceae family members. · WRKY factors are the major regulators of MAMP-induced PROPEP2 and PROPEP3 expression.

  7. Expression of a transferred nuclear gene in a mitochondrial genome

    Directory of Open Access Journals (Sweden)

    Yichun Qiu

    2014-08-01

    Full Text Available Transfer of mitochondrial genes to the nucleus, and subsequent gain of regulatory elements for expression, is an ongoing evolutionary process in plants. Many examples have been characterized, which in some cases have revealed sources of mitochondrial targeting sequences and cis-regulatory elements. In contrast, there have been no reports of a nuclear gene that has undergone intracellular transfer to the mitochondrial genome and become expressed. Here we show that the orf164 gene in the mitochondrial genome of several Brassicaceae species, including Arabidopsis, is derived from the nuclear ARF17 gene that codes for an auxin responsive protein and is present across flowering plants. Orf164 corresponds to a portion of ARF17, and the nucleotide and amino acid sequences are 79% and 81% identical, respectively. Orf164 is transcribed in several organ types of Arabidopsis thaliana, as detected by RT-PCR. In addition, orf164 is transcribed in five other Brassicaceae within the tribes Camelineae, Erysimeae and Cardamineae, but the gene is not present in Brassica or Raphanus. This study shows that nuclear genes can be transferred to the mitochondrial genome and become expressed, providing a new perspective on the movement of genes between the genomes of subcellular compartments.

  8. Identification of metabolic QTLs and candidate genes for glucosinolate synthesis in Brassica oleracea leaves, seeds and flower buds.

    Science.gov (United States)

    Sotelo, Tamara; Soengas, Pilar; Velasco, Pablo; Rodríguez, Víctor M; Cartea, María Elena

    2014-01-01

    Glucosinolates are major secondary metabolites found in the Brassicaceae family. These compounds play an essential role in plant defense against biotic and abiotic stresses, but more interestingly they have beneficial effects on human health. We performed a genetic analysis in order to identify the genome regions regulating glucosinolates biosynthesis in a DH mapping population of Brassica oleracea. In order to obtain a general overview of regulation in the whole plant, analyses were performed in the three major organs where glucosinolates are synthesized (leaves, seeds and flower buds). Eighty two significant QTLs were detected, which explained a broad range of variability in terms of individual and total glucosinolate (GSL) content. A meta-analysis rendered eighteen consensus QTLs. Thirteen of them regulated more than one glucosinolate and its content. In spite of the considerable variability of glucosinolate content and profiles across the organ, some of these consensus QTLs were identified in more than one tissue. Consensus QTLs control the GSL content by interacting epistatically in complex networks. Based on in silico analysis within the B. oleracea genome along with synteny with Arabidopsis, we propose seven major candidate loci that regulate GSL biosynthesis in the Brassicaceae family. Three of these loci control the content of aliphatic GSL and four of them control the content of indolic glucosinolates. GSL-ALK plays a central role in determining aliphatic GSL variation directly and by interacting epistatically with other loci, thus suggesting its regulatory effect.

  9. Regulatory elements of the floral homeotic gene AGAMOUS identified by phylogenetic footprinting and shadowing.

    Energy Technology Data Exchange (ETDEWEB)

    Hong, R. L., Hamaguchi, L., Busch, M. A., and Weigel, D.

    2003-06-01

    OAK-B135 In Arabidopsis thaliana, cis-regulatory sequences of the floral homeotic gene AGAMOUS (AG) are located in the second intron. This 3 kb intron contains binding sites for two direct activators of AG, LEAFY (LFY) and WUSCHEL (WUS), along with other putative regulatory elements. We have used phylogenetic footprinting and the related technique of phylogenetic shadowing to identify putative cis-regulatory elements in this intron. Among 29 Brassicaceae, several other motifs, but not the LFY and WUS binding sites previously identified, are largely invariant. Using reporter gene analyses, we tested six of these motifs and found that they are all functionally important for activity of AG regulatory sequences in A. thaliana. Although there is little obvious sequence similarity outside the Brassicaceae, the intron from cucumber AG has at least partial activity in A. thaliana. Our studies underscore the value of the comparative approach as a tool that complements gene-by-gene promoter dissection, but also highlight that sequence-based studies alone are insufficient for a complete identification of cis-regulatory sites.

  10. A draft genome of field pennycress (Thlaspi arvense) provides tools for the domestication of a new winter biofuel crop.

    Science.gov (United States)

    Dorn, Kevin M; Fankhauser, Johnathon D; Wyse, Donald L; Marks, M David

    2015-04-01

    Field pennycress (Thlaspi arvense L.) is being domesticated as a new winter cover crop and biofuel species for the Midwestern United States that can be double-cropped between corn and soybeans. A genome sequence will enable the use of new technologies to make improvements in pennycress. To generate a draft genome, a hybrid sequencing approach was used to generate 47 Gb of DNA sequencing reads from both the Illumina and PacBio platforms. These reads were used to assemble 6,768 genomic scaffolds. The draft genome was annotated using the MAKER pipeline, which identified 27,390 predicted protein-coding genes, with almost all of these predicted peptides having significant sequence similarity to Arabidopsis proteins. A comprehensive analysis of pennycress gene homologues involved in glucosinolate biosynthesis, metabolism, and transport pathways revealed high sequence conservation compared with other Brassicaceae species, and helps validate the assembly of the pennycress gene space in this draft genome. Additional comparative genomic analyses indicate that the knowledge gained from years of basic Brassicaceae research will serve as a powerful tool for identifying gene targets whose manipulation can be predicted to result in improvements for pennycress.

  11. Karyotype evolution in apomictic Boechera and the origin of the aberrant chromosomes.

    Science.gov (United States)

    Mandáková, Terezie; Schranz, M Eric; Sharbel, Timothy F; de Jong, Hans; Lysak, Martin A

    2015-06-01

    Chromosome rearrangements may result in both decrease and increase of chromosome numbers. Here we have used comparative chromosome painting (CCP) to reconstruct the pathways of descending and ascending dysploidy in the genus Boechera (tribe Boechereae, Brassicaceae). We describe the origin and structure of three Boechera genomes and establish the origin of the previously described aberrant Het and Del chromosomes found in Boechera apomicts with euploid (2n = 14) and aneuploid (2n = 15) chromosome number. CCP analysis allowed us to reconstruct the origin of seven chromosomes in sexual B. stricta and apomictic B. divaricarpa from the ancestral karyotype (n = 8) of Brassicaceae lineage I. Whereas three chromosomes (BS4, BS6, and BS7) retained their ancestral structure, five chromosomes were reshuffled by reciprocal translocations to form chromosomes BS1-BS3 and BS5. The reduction of the chromosome number (from x = 8 to x = 7) was accomplished through the inactivation of a paleocentromere on chromosome BS5. In apomictic 2n = 14 plants, CCP identifies the largely heterochromatic chromosome (Het) being one of the BS1 homologues with the expansion of pericentromeric heterochromatin. In apomictic B. polyantha (2n = 15), the Het has undergone a centric fission resulting in two smaller chromosomes - the submetacentric Het' and telocentric Del. Here we show that new chromosomes can be formed by a centric fission and can be fixed in populations due to the apomictic mode of reproduction.

  12. Reasoned opinion on the modification of the existing MRLs for tebuconazole in citrus (except oranges, lettuce and other salad plants, parsley and chives

    Directory of Open Access Journals (Sweden)

    European Food Safety Authority

    2012-09-01

    Full Text Available

    In accordance with Article 6 of Regulation (EC No 396/2005, Spain received an application from Makhteshim Agan Espana, S.A. to modify the existing MRLs for the active substance tebuconazole in citrus fruit (except oranges. Spain also received an application from Bayer CropScience to modify the existing MRL for tebuconazole for lettuce and other salad plants including Brassicaceae. Germany received an application from the plant protection service LSA (Landesanstalt für Landwirtschaft, Forsten und Gartenbau Sachsen-Anhalt to modify the MRLs for tebuconazole on parsley and chives. Spain and Germany drafted the evaluation reports in accordance with Article 8 of Regulation (EC No 396/2005, which were submitted to the European Commission and forwarded to EFSA. For reasons of efficiency EFSA combined the three applications in one reasoned opinion. According to EFSA the data are sufficient to derive MRL proposals for the crops under consideration. Adequate analytical enforcement methods are available to control residues of tebuconazole on the commodities for which a MRL is proposed at the validated LOQ of 0.02 mg/kg. Based on the risk assessment results, EFSA concludes that the proposed uses of tebuconazole on citrus fruit (except oranges, lettuce and other salad plants including Brassicaceae, chives and parsley will not result in a consumer exposure exceeding the toxicological reference values and therefore are unlikely to pose a consumer health risk.

  13. Identification of metabolic QTLs and candidate genes for glucosinolate synthesis in Brassica oleracea leaves, seeds and flower buds.

    Directory of Open Access Journals (Sweden)

    Tamara Sotelo

    Full Text Available Glucosinolates are major secondary metabolites found in the Brassicaceae family. These compounds play an essential role in plant defense against biotic and abiotic stresses, but more interestingly they have beneficial effects on human health. We performed a genetic analysis in order to identify the genome regions regulating glucosinolates biosynthesis in a DH mapping population of Brassica oleracea. In order to obtain a general overview of regulation in the whole plant, analyses were performed in the three major organs where glucosinolates are synthesized (leaves, seeds and flower buds. Eighty two significant QTLs were detected, which explained a broad range of variability in terms of individual and total glucosinolate (GSL content. A meta-analysis rendered eighteen consensus QTLs. Thirteen of them regulated more than one glucosinolate and its content. In spite of the considerable variability of glucosinolate content and profiles across the organ, some of these consensus QTLs were identified in more than one tissue. Consensus QTLs control the GSL content by interacting epistatically in complex networks. Based on in silico analysis within the B. oleracea genome along with synteny with Arabidopsis, we propose seven major candidate loci that regulate GSL biosynthesis in the Brassicaceae family. Three of these loci control the content of aliphatic GSL and four of them control the content of indolic glucosinolates. GSL-ALK plays a central role in determining aliphatic GSL variation directly and by interacting epistatically with other loci, thus suggesting its regulatory effect.

  14. Evolutionary divergence of the plant elicitor peptides (Peps) and their receptors: interfamily incompatibility of perception but compatibility of downstream signalling

    KAUST Repository

    Lori, M.

    2015-05-22

    Plant elicitor peptides (Peps) are potent inducers of pattern-triggered immunity and amplify the immune response against diverse pathogens. Peps have been discovered and studied extensively in Arabidopsis and only recently orthologs in maize were also identified and characterized in more detail. Here, the presence of PROPEPs, the Pep precursors, and PEPRs, the Pep receptors, was investigated within the plant kingdom. PROPEPs and PEPRs were identified in most sequenced species of the angiosperms. The conservation and compatibility of the Pep-PEPR-system was analysed by using plants of two distantly related dicot families, Brassicaceae and Solanaceae, and a representative family of monocot plants, the Poaceae. All three plant families contain important crop plants, including maize, rice, tomato, potato, and canola. Peps were not recognized by species outside of their plant family of origin, apparently because of a divergence of the Pep sequences. Three family-specific Pep motifs were defined and the integration of such a motif into the Pep sequence of an unrelated Pep enabled its perception. Transient transformation of Nicotiana benthamiana with the coding sequences of the AtPEPR1 and ZmPEPR1a led to the recognition of Pep peptides of Brassicaceae or Poaceae origin, respectively, and to the proper activation of downstream signalling. It was concluded that signalling machinery downstream of the PEPRs is highly conserved whereas the leucine-rich repeat domains of the PEPRs co-evolved with the Peps, leading to distinct motifs and, with it, interfamily incompatibility.

  15. 4-Methylthiobutyl isothiocyanate (Erucin) from rocket plant dichotomously affects the activity of human immunocompetent cells.

    Science.gov (United States)

    Gründemann, Carsten; Garcia-Käufer, Manuel; Lamy, Evelyn; Hanschen, Franziska S; Huber, Roman

    2015-03-15

    Isothiocyanates (ITC) from the Brassicaceae plant family are regarded as promising for prevention and treatment of cancer. However, experimental settings consider their therapeutic action without taking into account the risk of unwanted effects on healthy tissues. In the present study we investigated the effects of Eruca sativa seed extract containing MTBITC (Erucin) and pure Erucin from rocket plant on healthy cells of the human immune system in vitro. Hereby, high doses of the plant extract as well as of Erucin inhibited cell viability of human lymphocytes via induction of apoptosis to comparable amounts. Non-toxic low concentrations of the plant extract and pure Erucin altered the expression of the interleukin (IL)-2 receptor but did not affect further T cell activation, proliferation and the release of the effector molecules interferon (IFN)-gamma and IL-2 of T-lymphocytes. However, the activity of NK-cells was significantly reduced by non-toxic concentrations of the plant extract and pure Erucin. These results indicate that the plant extract and pure Erucin interfere with the function of human T lymphocytes and decreases the activity of NK-cells in comparable concentrations. Long-term clinical studies with ITC-enriched plant extracts from Brassicaceae should take this into account.

  16. Isolation and identification of 4-α-rhamnosyloxy benzyl glucosinolate in Noccaea caerulescens showing intraspecific variation.

    Science.gov (United States)

    de Graaf, Rob M; Krosse, Sebastian; Swolfs, Ad E M; te Brinke, Esra; Prill, Nadine; Leimu, Roosa; van Galen, Peter M; Wang, Yanli; Aarts, Mark G M; van Dam, Nicole M

    2015-02-01

    Glucosinolates are secondary plant compounds typically found in members of the Brassicaceae and a few other plant families. Usually each plant species contains a specific subset of the ∼ 130 different glucosinolates identified to date. However, intraspecific variation in glucosinolate profiles is commonly found. Sinalbin (4-hydroxybenzyl glucosinolate) so far has been identified as the main glucosinolate of the heavy metal accumulating plant species Noccaea caerulescens (Brassicaceae). However, a screening of 13 N. caerulescens populations revealed that in 10 populations a structurally related glucosinolate was found as the major component. Based on nuclear magnetic resonance (NMR) and mass spectrometry analyses of the intact glucosinolate as well as of the products formed after enzymatic conversion by sulfatase or myrosinase, this compound was identified as 4-α-rhamnosyloxy benzyl glucosinolate (glucomoringin). So far, glucomoringin had only been reported as the main glucosinolate of Moringa spp. (Moringaceae) which are tropical tree species. There was no apparent relation between the level of soil pollution at the location of origin, and the presence of glucomoringin. The isothiocyanate that is formed after conversion of glucomoringin is a potent antimicrobial and antitumor agent. It has yet to be established whether glucomoringin or its breakdown product have an added benefit to the plant in its natural habitat.

  17. Caracterización palinológica de las mieles de la llanura del río Senguerr (Chubut-Argentina

    Directory of Open Access Journals (Sweden)

    Alicia Forcone

    2000-01-01

    Full Text Available Forcone, A. & Tellería, M. C. 2000. Caracterización palinológica de las mieles de la llanuradel río Senguerr (Chubut-Argentina. Darwiniana 38(3-4: 267-271.Con el fin de conocer las plantas melíferas de la llanura del río Senguerr, se realizó el análisispalinológico de 19 muestras de miel. El estudio permitió identificar 57 tipos morfológicos y demostrarque las principales fuentes de néctar pertenecen a las familias Fabaceae, Rosaceae, Brassicaceae yAsteraceae. Del total de muestras analizadas 9 resultaron mixtas y 10 monoflorales, de estas últimas, 8fueron de Melilotus sp. y 2 de Rosaceae. Las mieles estudiadas pueden ser caracterizadas por unaasociación polínica de Trifolieae, Brassicaceae, Rosaceae, Acaena sp., Glycyrrhiza astragalina Gillies exHook. & Arn. and Cyperaceae. En la mayoría de las muestras el contenido polínico fue inferior a 2000granos/gramo

  18. Anastatica hierochuntica, an Arabidopsis Desert Relative, Is Tolerant to Multiple Abiotic Stresses and Exhibits Species-Specific and Common Stress Tolerance Strategies with Its Halophytic Relative, Eutrema (Thellungiella) salsugineum

    Science.gov (United States)

    Eshel, Gil; Shaked, Ruth; Kazachkova, Yana; Khan, Asif; Eppel, Amir; Cisneros, Aroldo; Acuna, Tania; Gutterman, Yitzhak; Tel-Zur, Noemi; Rachmilevitch, Shimon; Fait, Aaron; Barak, Simon

    2017-01-01

    The search for novel stress tolerance determinants has led to increasing interest in plants native to extreme environments – so called “extremophytes.” One successful strategy has been comparative studies between Arabidopsis thaliana and extremophyte Brassicaceae relatives such as the halophyte Eutrema salsugineum located in areas including cold, salty coastal regions of China. Here, we investigate stress tolerance in the desert species, Anastatica hierochuntica (True Rose of Jericho), a member of the poorly investigated lineage III Brassicaceae. We show that A. hierochuntica has a genome approximately 4.5-fold larger than Arabidopsis, divided into 22 diploid chromosomes, and demonstrate that A. hierochuntica exhibits tolerance to heat, low N and salt stresses that are characteristic of its habitat. Taking salt tolerance as a case study, we show that A. hierochuntica shares common salt tolerance mechanisms with E. salsugineum such as tight control of shoot Na+ accumulation and resilient photochemistry features. Furthermore, metabolic profiling of E. salsugineum and A. hierochuntica shoots demonstrates that the extremophytes exhibit both species-specific and common metabolic strategies to cope with salt stress including constitutive up-regulation (under control and salt stress conditions) of ascorbate and dehydroascorbate, two metabolites involved in ROS scavenging. Accordingly, A. hierochuntica displays tolerance to methyl viologen-induced oxidative stress suggesting that a highly active antioxidant system is essential to cope with multiple abiotic stresses. We suggest that A. hierochuntica presents an excellent extremophyte Arabidopsis relative model system for understanding plant survival in harsh desert conditions. PMID:28144244

  19. The effects of glucosinolates and their breakdown products on necrotrophic fungi.

    Directory of Open Access Journals (Sweden)

    Kobi Buxdorf

    Full Text Available Glucosinolates are a diverse class of S- and N-containing secondary metabolites that play a variety of roles in plant defense. In this study, we used Arabidopsis thaliana mutants that contain different amounts of glucosinolates and glucosinolate-breakdown products to study the effects of these phytochemicals on phytopathogenic fungi. We compared the fungus Botrytis cinerea, which infects a variety of hosts, with the Brassicaceae-specific fungus Alternaria brassicicola. B. cinerea isolates showed variable composition-dependent sensitivity to glucosinolates and their hydrolysis products, while A. brassicicola was more strongly affected by aliphatic glucosinolates and isothiocyanates as decomposition products. We also found that B. cinerea stimulates the accumulation of glucosinolates to a greater extent than A. brassicicola. In our work with A. brassicicola, we found that the type of glucosinolate-breakdown product is more important than the type of glucosinolate from which that product was derived, as demonstrated by the sensitivity of the Ler background and the sensitivity gained in Col-0 plants expressing epithiospecifier protein both of which accumulate simple nitrile and epithionitriles, but not isothiocyanates. Furthermore, in vivo, hydrolysis products of indole glucosinolates were found to be involved in defense against B. cinerea, but not in the host response to A. brassicicola. We suggest that the Brassicaceae-specialist A. brassicicola has adapted to the presence of indolic glucosinolates and can cope with their hydrolysis products. In contrast, some isolates of the generalist B. cinerea are more sensitive to these phytochemicals.

  20. Biodiversity effects of elevated CO{sub 2} in species-rich model communities from the semi-arid Negev of Israel

    Energy Technology Data Exchange (ETDEWEB)

    Grunzweig, J.M. [Weismann Inst. Sci., Dept. Environm. Sci. and Energy Res., Rehovot (Israel); Korner, C. [Univ. Basel, Inst. Bot., Basel (Switzerland)

    2002-10-01

    Species-specific responses to atmospheric CO2 enrichment may affect biodiversity, which in turn may alter ecosystem functioning. Here we have explored biodiversity effects in model assemblages of semi-arid grassland of the northern Negev, Israel, at 280 ppm (pre-industrial era), 440 ppm (early 21st century) and 600 ppm CO{sub 2} (mid to late 21st century). Thirty-two mostly annual species were grown together in large containers (ca 400 kg each) on native soil and under a dynamic simulation of the Negev winter climate, CO{sub 2} enrichment increased concentrations of total non-structural carbohydrates and C/N ratios, and reduced specific leaf area and nitrogen concentrations in leaves of all species. In contrast to these uniform CO{sub 2} effects on leaf quality. biomass and reproductive output remained unchanged in most species, and varied greatly among the few responsive ones ( - 80 to + 145%). Biomass was significantly increased at elevated CO2 in Onobrychis crista-galli (one of the six legume species) and was reduced in Biscutella didyma (Brassicaceae). Seed yield increased in three out of six legumes and in the root hemiparasite Parentucellia flaviflora. and decreased in the grass Aegilops peregrina. Fruit dry matter tended to be reduced in two Brassicaceae. Onobrychis, the largest and most responsive species present, was the most 'mesic' legume, and might have profited most from the higher soil moisture induced by CO{sub 2} enrichment. The significant CO{sub 2} response of only 5-6 out of 32 species, in particular their altered seed yield, suggests a potential shift in biodiversity. In a future CO{sub 2}-enriched atmosphere. 'mesic' legumes and root hemiparasites might be favored. while some Brassicaceae and grasses might decline. As indicated by significant 280- vs 440-ppm differences. reductions in leaf nitrogen concentration of grasses and legumes are likely to be under way right now, and may negatively affect grazers. Altered seed

  1. Comparison Analysis of Transcripts from the Halophyte Thellungiella halophila

    Institute of Scientific and Technical Information of China (English)

    Yiyue Zhang; Jianbin Lai; Shouhong Sun; Yin Li; Yuanyuan Liu; Liming Liang; Mingsheng Chen; Qi Xie

    2008-01-01

    The Brassicaceae family halophyte Thellungiella halophila has a high salinity tolerance and serves as a valuable halophytic genetic model plant with experimental convenience similar to Arabidopsis thaliana. A Cdna library of Thellungiella was generated from salt-treated seedlings including rosettes and roots. More than 1000 randomly selected clones were sequenced and 946 expressed sequence tags (ESTs) were generated. The accession numbers of our EST data are available online in the GenBank database from EC598928 to EC599965. In total 679 unique clusters were assembled, and 632 (93%) had BLASTX hits in the nr databases and 7% are Thellungiella unique. According to the Gene Ontology (GO) hierarchy, 385 of 679 unigenes were categorized. Compared with public Arabidopsis microarray data, our results provide more potential salt tolerance genes in Thellungiella. These results will provide a broader coverage into Thellungiella transcriptome and benefit the discovery of salt tolerance related genes.

  2. Aqueous extracts of some medicinal plants are as toxic as Imidacloprid to the sweet potato whitefly, Bemisia tabaci.

    Science.gov (United States)

    Ateyyat, Mazen A; Al-Mazra'awi, Mohammad; Abu-Rjai, Talal; Shatnawi, Mohamad A

    2009-01-01

    Aqueous extracts of nine plants, known to have medicinal activity, were tested for their toxicity against the sweet potato whitefly, Bemisia tabaci Genn. (Homoptera: Aleurodidae) compared to the toxicity of the insecticide, Imidacloprid. Extracts of Lepidiuim sativum L. (Brassicales: Brassicaceae) killed 71 % of early stage nymphs, which was not significantly different from mortality caused by Imidacloprid. Treatment of pupae with three plant extracts, L. sativum, Achillea biebersteinii L. (Asterales: Asteraceae), or Retama raetam (Forssk.) Webb and Berthel (Fabales: Fabaceae) prevented adult development, and treatment with R. raetam extract killed adults, at levels that were not significantly different from Imidacloprid. None of the other plants showed significant toxicity. However extracts of four plants, Pimpinella anisum L. (Apiales: Apiaceae), Galium longifolium (Sibth. and SM.) (Gentianales: Rubiaceae), R. raetam and Ballota undulata Bentham (Lamiales: Lamiaceae) had a repellent effect.

  3. Taraxacum officinale pollen depresses seed set of montane wildflowers through pollen allelopathy

    Directory of Open Access Journals (Sweden)

    Deirdre Loughnan

    2014-08-01

    Full Text Available Plant species that share pollinators can suffer from interspecific pollen deposition. Male reproductive success is inevitably reduced by the loss of pollen to flowers of another species. Female reproductive success can be affected by reduced stigmatic area or, more strongly, through allelopathic effects by which the admixture of some foreign pollen reduces seed or fruit set. We tested for allelopathic effects of Taraxacum officinale (Asteracaeae pollen on the seed set of montane wildflowers Erythronium grandiflorum (Liliaceae and Erysimum capitatum (Brassicaceae, by hand-pollinating plants with pollen mixtures. Taraxacum is a common invasive species, which produces allelopathic chemicals in its root and vegetative tissue, making it a likely candidate for pollen allelopathy. Flowers of both species produced fewer well-developed seeds when pollinated with pollen mixtures containing Taraxacum pollen. The pollen-allelopathic potential of weedy dandelion may add to its ability to disrupt communities that it invades.

  4. Flora in abandoned fields and adjacent crop fields on rendzina soils in the Zamość region

    Directory of Open Access Journals (Sweden)

    Marta Ziemińska-Smyk

    2015-10-01

    Full Text Available A floristic inventory of segetal flora was carried out in abandoned fields and adjacent crop fields on rendzina soils in the Zamość region in the year 2010. This study found a total of 130 weed species belonging to 30 botanical families. The following families were represented most frequently: Asteraceae, Fabaceae, Poaceae, Lamiaceae, Scrophulariaceae, and Brassicaceae. In the segetal flora, apophytes are dominant (55% of the total flora, with the highest number of meadow and xerothermic grassland species among them. Archeophytes (38% predominate in the group of anthropophytes. The species characterized by the highest constancy classes and reaching the highest cover indices posed the greatest threat to crops in the study area. The following weeds are most frequently found in fallow fields: Consolida regalis, Cichorium intybus, and Sinapis arvensis, while Papaver rhoeas is the greatest threat to cereal crops grown on rendzina soils.

  5. Bunias orientalis L. as a natural overwintering host OF Turnip mosaic virus

    Directory of Open Access Journals (Sweden)

    Tadeusz Kobyłko

    2012-12-01

    Full Text Available A virus was isolated, using mechanical inoculation, from hill mustard (Bunias orientalis L. plants exhibiting yellow mottling and blistering on leaves, which were frequently accompanied by asymmetric leaf narrowing. It systemically infected certain plants from the family Brassicaceae (Brassica rapa, Bunias orientalis, Hesperis matronalis, Sinapis alba as well as Cleome spinosa and Nicotiana clevelandii, and locally Atriplex hortensis, Chenopodium quinoa, Ch. amaranticolor, N. tabacum. In the sap, it maintained infectivity for 3-4 days and lost it after heating for 10 min. at a temperature of 55 - 60oC or when diluted with water at 10-3. Virus particles were thread- like with a length of 675 - 710 nm. Based on an analysis of biological properties of the pathogen, serological response, particle morphology and data from field observations, it was identified as an isolate of Turnip mosaic virus (TuMV, and hill mustard was recognised as a natural overwintering host for this pathogen.

  6. A using of biometric methods for the delineation of floral units on the plant

    Directory of Open Access Journals (Sweden)

    Viktoria E. Kharchenko

    2012-03-01

    Full Text Available On the base of the using of biometric analysis of linear dimensions of the leaves, stipules, bracts and bracteoles in the Brassicaceae (Arabidopsis thaliana, Matthiola longipetala, Lobularia maritime, Lamiaceae (Lamium purpureum, Salvia tesquicola and Boraginaceae (Cynoglossum offisinale, Echium vulgare, Nonea pulla, it has found that the linear dimensions of the leaves and bracts are changed in a similar pattern, which is different from the pattern of change of the stipules and bracteole. In this regard, the biometric analysis of the linear dimensions of the leaves on the shoot can be used as an additional criterion for establishing of the boundaries and composition of floral pieces, as well as for the homologation of shoot elements.

  7. Beyond the thale: comparative genomics and genetics of Arabidopsis relatives.

    Science.gov (United States)

    Koenig, Daniel; Weigel, Detlef

    2015-05-01

    For decades a small number of model species have rightly occupied a privileged position in laboratory experiments, but it is becoming increasingly clear that our knowledge of biology is greatly improved when informed by a broader diversity of species and evolutionary context. Arabidopsis thaliana has been the primary model organism for plants, benefiting from a high-quality reference genome sequence and resources for reverse genetics. However, recent studies have made a group of species also in the Brassicaceae family and closely related to A. thaliana a focal point for comparative molecular, genomic, phenotypic and evolutionary studies. In this Review, we emphasize how such studies complement continued study of the model plant itself, provide an evolutionary perspective and summarize our current understanding of genetic and phenotypic diversity in plants.

  8. Palinología arqueológica: su implicancia en el estudio del prehispánico tardío de las sierras de Córdoba (Argentina Archaeological Palynology: Its Impact On The Study Of The Late Prehispanic Period Of The Sierras De Córdoba, Argentina

    Directory of Open Access Journals (Sweden)

    Matías E. Medina

    2008-12-01

    Full Text Available Cuatro sitios arqueológicos correspondientes al Periodo prehispánico tardío de las sierras de Córdoba (ca. 1000-300 AP: Los Algarrobos 1, Puesto La Esquina 1 (Pampa de Olaen, C.Pun.39 y Las Chacras 2 (valle de Punilla, fueron estudiados en base a su contenido palinológico. Los sitios Los Algarrobos 1 y Puesto La Esquina 1 registraron, como consecuencia de sesgos tafonómicos, insuficiente contenido polínico. En cambio, las asociaciones polínicas de C.Pun.39 y Las Chacras 2 permitieron inferir paleo-comunidades vegetales dominadas por Chenopodiaceae-Amaranthaceae y Brassicaceae (C.Pun. 39 y por el primer taxón (Las Chacras 2. Las dos familias vegetales tienen baja representación en la lluvia polínica actual. Se postula la posibilidad de que las significativas proporciones de Chenopodiaceae-Amaranthaceae podrían estar sugiriendo la presencia de cultivos prehispánicos de Chenopodium quinoa y Amaranthus caudatus en los alrededores de los sitios. Otras evidencias de macro y microrrestos ligadas a cultivos sustentan dicha hipótesis. Las importantes proporciones tanto de Chenopodiaceae-Amaranthaceae como de Brassicaceae registradas en C.Pun.39 son también analizadas como indicativas de sucesivos abandonos y reocupaciones de los sitios, coherentes con un patrón de alta movilidad residencial entre los grupos prehispánicos tardíos. Ambientes perturbados por actividad antrópica habrían contribuido al desarrollo de tales plantas.Four archaeological sites dating from the Late Prehispanic Period of the Sierras de Córdoba (ca. 1000-300 BP are studied by means of palynological analysis. These sites are Los Algarrobos 1, Puesto La Esquina 1 (Pampa de Olaen, C.Pun.39 and Las Chacras 2 (Punilla valley. Los Algarrobos 1 and Puesto La Esquina 1 sites present scarce pollinic grains as a consequence of taphonomic bias. However, from the pollinic spectrum from C.Pun.39 and Las Chacras 2 sites it was possible to infer vegetational paleo

  9. Virus-Induced Gene Silencing in the Culinary Ginger (Zingiber officinale): An Effective Mechanism for Down-Regulating Gene Expression in Tropical Monocots

    Institute of Scientific and Technical Information of China (English)

    Tanya Renner; Jennifer Bragga; Heather E. Driscoll; Juliana Cho; Andrew O. Jackson; Chelsea D. Specht

    2009-01-01

    Virus-induced gene silencing (VIGS) has been shown to be effective for transient knockdown of gene expres-sion in plants to analyze the effects of specific genes in development and stress-related responses. VlGS is well established for studies of model systems and crops within the Solanaceae, Brassicaceae, Leguminaceae, and Poaceae, but only recently has been applied to plants residing outside these families. Here, we have demonstrated that barley stripe mosaic virus (BSMV) can infect two species within the Zingiberaceae, and that BSMV-VlGS can be applied to specifically down-regulate phytoene desaturase in the culinary ginger Zingiber officinale. These results suggest that extension of BSMV-VIGS to monocots other than cereals has the potential for directed genetic analyses of many important temperate and tropical crop species.

  10. Etude des groupements d'adventices dans le Maroc occidental

    Directory of Open Access Journals (Sweden)

    Douira, A.

    2010-01-01

    Full Text Available Study of the weeds groupings in western Morocco. An ecological floristic study was carried out in the principal areas of Morocco severely infested by the sterile oats. From 110 readings taken in cereals, the 324 listed species belong to 47 botanical families including 39 dicotyledons. Six families: Asteraceae, Fabaceae, Poaceae, Brassicaceae, Caryophyllaceae and Apiaceae add up 59% of the total staff complement alone. The biological aspect shows a prevalence of the therophytes with 80%, followed by the hemicryptophytes and the geophytes with respectively 11 and 7%. Mediterranean taxa are dominating with 62% of the total staff complement. The taking into account of the index partial of noxiousness made it possible to release 27 problematic species whose Avena sterilis, Phalaris paradoxa, Phalaris brachystachys, Scolymus maculates, Lolium multiflorum, Papaver rhoeas and Lolium rigidum are most harmful by far. The factorial analysis of correspondences (A.F.C., by the means of the edaphic variables, made it possible to highlight six ecological groups.

  11. Boechera microsatellite website: an online portal for species identification and determination of hybrid parentage.

    Science.gov (United States)

    Li, Fay-Wei; Rushworth, Catherine A; Beck, James B; Windham, Michael D

    2017-01-01

    Boechera (Brassicaceae) has many features to recommend it as a model genus for ecological and evolutionary research, including species richness, ecological diversity, experimental tractability and close phylogenetic proximity to Arabidopsis . However, efforts to realize the full potential of this model system have been thwarted by the frequent inability of researchers to identify their samples and place them in a broader evolutionary context. Here we present the Boechera Microsatellite Website (BMW), a portal that archives over 55 000 microsatellite allele calls from 4471 specimens (including 133 nomenclatural types). The portal includes analytical tools that utilize data from 15 microsatellite loci as a highly effective DNA barcoding system. The BMW facilitates the accurate identification of Boechera samples and the investigation of reticulate evolution among the ±83 sexual diploid taxa in the genus, thereby greatly enhancing Boechera 's potential as a model system.

  12. Key factors influencing the potential of catch crops for methane production.

    Science.gov (United States)

    Molinuevo-Salces, Beatriz; Fernández-Varela, Raquel; Uellendahl, Hinrich

    2014-08-01

    Catch crops are grown in crop rotation primarily for soil stabilization. The excess biomass of catch crops was investigated for its potential as feedstock for biogas production. Ten variables affecting catch crop growth and methane potential were evaluated. Field trials and methane potential were studied for 14 different catch crops species, with 19 samples harvested in 2010 and 36 harvested in 2011. Principal component analysis was applied to the data to identify the variables characterizing the potential for the different catch crops species for methane production. Two principal components explained up to 84.6% and 71.6% of the total variation for 2010 and 2011 samples, respectively. Specific methane yield, climate conditions (rainfall and temperature) and total nitrogen in the biomass were the variables classifying the different catch crops. Catch crops in the Brassicaceae and Graminaceae botanical families showed the highest methane yield. This study demonstrates the importance of the crop species when choosing a suitable catch crop for biogas production.

  13. Biological and ecophysiological reactions of white wall rocket (Diplotaxis erucoides L.) grown on sewage sludge compost.

    Science.gov (United States)

    Korboulewsky, Nathalie; Bonin, Gilles; Massiani, Catherine

    2002-01-01

    We studied the effects of sewage sludge compost on white wall rocket (Diplotaxis erucoides L.) compared with mineral fertilization and control (without any fertilizer) in a greenhouse experiment. The plants grown on the compost-amended soil showed a different growth dynamic: a significant delay in flowering and a bigger root system. Both the compost and the fertilization treatments increased biomass and seed yield. Heavy metal (Cu, Cd, Zn, Ni) distribution within the plant was in the following order: roots > leaves > stems, except for zinc which was homogeneously distributed. The balance of mineral nutrition was not affected by treatments. Zinc was the trace element which was most taken up. Unlike many species of Brassicaceae, white wall rocket is not a hyperaccumulator. Although sewage sludge compost improved plant growth, delay in flowering shows that it is necessary to take precautions when spreading sewage sludge in natural areas.

  14. Key factors influencing the potential of catch crops for methane production

    DEFF Research Database (Denmark)

    Molinuevo-Salces, Beatriz; Fernandez-Varela, Raquel; Uellendahl, Hinrich

    2014-01-01

    Catch crops are grown in crop rotation primarily for soil stabilization. The excess biomass of catch crops was investigated for its potential as feedstock for biogas production. Ten variables affecting catch crop growth and methane potential were evaluated. Field trials and methane potential were...... studied for 14 different catch crops species, with 19 samples harvested in 2010 and 36 harvested in 2011. Principal component analysis was applied to the data to identify the variables characterizing the potential for the different catch crops species for methane production. Two principal components...... explained up to 84.6% and 71.6% of the total variation for 2010 and 2011 samples, respectively. Specific methane yield, climate conditions (rainfall and temperature) and total nitrogen in the biomass were the variables classifying the different catch crops. Catch crops in the Brassicaceae and Graminaceae...

  15. Theodor von Heldreich (1822-1902) and his Turkish collections

    DEFF Research Database (Denmark)

    Baytop, Asuman; Tan, Kit

    2008-01-01

    The distinguished German botanist Theodor von Heldreich (1822-1902) visited Anatolia on at least 6 separate occasions as documented by specimens cited in Flora of Turkey and Flora Orientalis. His first visit was in 1845 and his last, to Izmir, in 1852. Within this period of less than seven years he...... the Flora alone as precise dates and numbers are rarely provided in the citations. However, by studying actual specimens deposited in herbaria we can obtain more information and this work is in progress. Heldreich´s Turkish collections are represented in 27 herbaria located in 12 European countries...... excluding 2 in the United States. He is commemorated by the genus Heldreichia Boiss. (Brassicaceae), which has 4 species in Turkey. Numerous other taxa bear the epithets heldreichii, heldreichianus, -a or -um. At least 18 such taxa are listed in the Flora of Turkey. Heldreich died in Athens at the age of 80...

  16. Self-incompatibility: Smi silences through a novel sRNA pathway.

    Science.gov (United States)

    Finnegan, E Jean; Liang, Dacheng; Wang, Ming-Bo

    2011-05-01

    Self-incompatibility in Brassicaceae is determined by the interaction between S-Locus Protein 11 (SP11) on the pollen and S-receptor kinase (SRK) in the stigma. Pollen from heterozygotes generally displays products of both SP11 alleles, but in some heterozygotes SP11 expression is monoallelic, with one allele (SP11(R)) being silenced by promoter methylation. An exciting development in understanding the mechanism behind monoallelic silencing came recently when Y. Tarutani et al. [Nature 2010;466:983-986] identified a 24-nucleotide sRNA (termed Smi) derived from a non-coding gene within the dominant S-haplotype, and suggested that Smi directs promoter methylation. We propose that rather than having a direct effect on DNA methylation, Smi is the first step in a novel cis-acting siRNA pathway that directs widespread monoallelic SP11(R) promoter methylation.

  17. Polvo vegetal para alimentación y protección vegetal y métodos de preparación

    OpenAIRE

    2010-01-01

    [ES] La presente invención se refiere a un método de producción de polvo vegetal para su uso en alimentación y protección vegetal, preferiblemente el polvo vegetal se obtiene a partir de vegetales de la familia Brassicaceae (crucíferas). Además, la presente invención también se refiere al polvo vegetal obtenido mediante el procedimiento de la invención y el uso del polvo vegetal para su uso en alimentación y protección vegetal como herbicida e insecticida vegetal. Además, también se refiere a...

  18. A contribution to studies of the ruderal vegetation of southern Srem, Serbia

    Directory of Open Access Journals (Sweden)

    Jarić Snežana

    2011-01-01

    Full Text Available Floristic research investigating the presence and phytocoenological differentiation of ruderal vegetation, and how it is conditioned structurally and anthropogenically, was undertaken over a period of several years (2007-10 in the south Srem region. The ruderal flora of the research area comprised 249 plants categorized into 63 families, of which the most frequent were: Asteraceae (36, Poaceae (29, Fabaceae (18, Lamiaceae (15, Polygonaceae (15, Brassicaceae (11 and Rosaceae (11. Three ruderal communities are analyzed in this work: Asclepietum syriacae Kojić et al., 2004, as well as Chenopodio-Ambrosietum artemisiifoliae ass. nova and Amorpho-Typhaetum ass. nova, which are described for the first time. It was established that the level of moisture at the habitat, anthropogenic factors, and the immediate proximity to cultivated areas had the most pronounced effect on the differentiation of the researched vegetation.

  19. A complete mitochondrial genome sequence of Ogura-type male-sterile cytoplasm and its comparative analysis with that of normal cytoplasm in radish (Raphanus sativus L.

    Directory of Open Access Journals (Sweden)

    Tanaka Yoshiyuki

    2012-07-01

    Full Text Available Abstract Background Plant mitochondrial genome has unique features such as large size, frequent recombination and incorporation of foreign DNA. Cytoplasmic male sterility (CMS is caused by rearrangement of the mitochondrial genome, and a novel chimeric open reading frame (ORF created by shuffling of endogenous sequences is often responsible for CMS. The Ogura-type male-sterile cytoplasm is one of the most extensively studied cytoplasms in Brassicaceae. Although the gene orf138 has been isolated as a determinant of Ogura-type CMS, no homologous sequence to orf138 has been found in public databases. Therefore, how orf138 sequence was created is a mystery. In this study, we determined the complete nucleotide sequence of two radish mitochondrial genomes, namely, Ogura- and normal-type genomes, and analyzed them to reveal the origin of the gene orf138. Results Ogura- and normal-type mitochondrial genomes were assembled to 258,426-bp and 244,036-bp circular sequences, respectively. Normal-type mitochondrial genome contained 33 protein-coding and three rRNA genes, which are well conserved with the reported mitochondrial genome of rapeseed. Ogura-type genomes contained same genes and additional atp9. As for tRNA, normal-type contained 17 tRNAs, while Ogura-type contained 17 tRNAs and one additional trnfM. The gene orf138 was specific to Ogura-type mitochondrial genome, and no sequence homologous to it was found in normal-type genome. Comparative analysis of the two genomes revealed that radish mitochondrial genome consists of 11 syntenic regions (length >3 kb, similarity >99.9%. It was shown that short repeats and overlapped repeats present in the edge of syntenic regions were involved in recombination events during evolution to interconvert two types of mitochondrial genome. Ogura-type mitochondrial genome has four unique regions (2,803 bp, 1,601 bp, 451 bp and 15,255 bp in size that are non-syntenic to normal-type genome, and the gene orf138

  20. Effects of sex, host-plant deprivation and presence of conspecific immatures on the cannibalistic behavior of wild Ascia monuste orseis (Godart (Lepidoptera, Pieridae

    Directory of Open Access Journals (Sweden)

    Alessandra F. K. Santana

    2011-03-01

    Full Text Available Effects of sex, host-plant deprivation and presence of conspecific immatures on the cannibalistic behavior of wild Ascia monuste orseis (Godart (Lepidoptera, Pieridae. The specialist cabbage caterpillar Ascia monuste orseis (Lepidoptera, Pieridae feeds on plants of the Brassicaceae family, but may eventually ingest conspecific eggs and larvae during the larval stage. The present study examines feeding behavior of 4th and 5th instar cabbage caterpillars in relation to sex, host-plant deprivation and presence of conspecifics. We recorded number of egg ingested per larvae, developmental indices and duration of feeding, exploratory and resting behavior. Kale deprived caterpillars presented high rates of cannibalism, development delay and decreased fecundity. Cannibalism rates were not influenced by the sex of the larvae. In general, the presence of conspecific eggs did not interfere with the frequency and duration of the categorical behavioral events. We conclude that food availability is a strong factor influencing the extent to which A. monuste orseis caterpillars cannibalize.

  1. Ethnoveterinary practices of aborigine tribes in Odisha, India

    Institute of Scientific and Technical Information of China (English)

    Bikram K Mallik; Tribhuban Panda; Rabindra N Padhy

    2012-01-01

    Objective: To record ethnoveterinary information of numerous aboriginal tribes of Kalahandi district of Odisha state, India. Methods: A survey of about 20 hamlets in the district was done with a questioner and personal interviews using the snowball technique in survey and sampling.Results:Seventy-three plants belonging to 41 families (Acanthaceae, Alangiaceae, Amaranthaceae, Amaryllidaceae, Anacadiaceae, Annonaceae, Araceae, Arecaceae, Asclepiadaceae, Asteraceae, Bombaceae, Brassicaceae, Caesalpinaceae, Cucurbitaceae, Combretaceae, Convolvulaceae, Ebenaceae, Euphorbiaceae, Fabaceae, Lamiaceae, Lecythidaceae, Loganiaceae, Malvaceae, Meliaceae, Menispermaceae, Mimosaceae, Moraceae, Moringaceae, Musaceae, Myrtaceae, Piperaceae, Plumbaginaceae, Poaceae, Ranunculaceae, Rubiaceae, Rutaceae, Solanaceae, Umbelliferae, Verbenaceae, Vitaceae and Zingiberaceae) are used by aborigine tribes of Kalahandi district, Odisha, India, for treating ailments of domestic animals. Conclusion: Aborigine tribes of Kalahandi district use about 73 plants for treating ailments of animals.

  2. Morphomechanical Innovation Drives Explosive Seed Dispersal.

    Science.gov (United States)

    Hofhuis, Hugo; Moulton, Derek; Lessinnes, Thomas; Routier-Kierzkowska, Anne-Lise; Bomphrey, Richard J; Mosca, Gabriella; Reinhardt, Hagen; Sarchet, Penny; Gan, Xiangchao; Tsiantis, Miltos; Ventikos, Yiannis; Walker, Simon; Goriely, Alain; Smith, Richard; Hay, Angela

    2016-06-30

    How mechanical and biological processes are coordinated across cells, tissues, and organs to produce complex traits is a key question in biology. Cardamine hirsuta, a relative of Arabidopsis thaliana, uses an explosive mechanism to disperse its seeds. We show that this trait evolved through morphomechanical innovations at different spatial scales. At the organ scale, tension within the fruit wall generates the elastic energy required for explosion. This tension is produced by differential contraction of fruit wall tissues through an active mechanism involving turgor pressure, cell geometry, and wall properties of the epidermis. Explosive release of this tension is controlled at the cellular scale by asymmetric lignin deposition within endocarp b cells-a striking pattern that is strictly associated with explosive pod shatter across the Brassicaceae plant family. By bridging these different scales, we present an integrated mechanism for explosive seed dispersal that links evolutionary novelty with complex trait innovation. VIDEO ABSTRACT.

  3. Simultaneous Analysis of Multiple Promoters: An Application of the PC-GW Binary Vector Series.

    Science.gov (United States)

    Dalal, Jyoti

    2016-01-01

    With the advances in the field of synthetic biology, there is an increasing demand for multi-gene cloning technologies. Molecular cloning to generate multi-gene constructs can be performed by restriction digestion, or by recombination-based cloning strategies such as Gateway(®). This chapter details cloning, transformation, and selection procedures involved in generation of multi-gene expressing transgenic plants. Methods are described for cloning five distinct promoter-reporter fusion constructs into the PC-GW-BAR vector (from the PC-GW vector series) using Gateway(®) technology and meganuclease sites. Further, transformation and selection methods are described for the biofuel crop Camelina sativa from the Brassicaceae family. These methods would be constructive toward generating multi-gene expressing plants for simultaneous expression analysis of five promoters in a short time period.

  4. Flavonoids from Capsella bursa-pastoris and their hepatoprotective activities in vitro

    Directory of Open Access Journals (Sweden)

    Qinge Ma

    Full Text Available ABSTRACT Two new flavonoids (1 and 2, named 4',7-dihydroxy-5-hydroxymethyl-8-prenylflavonoid and 4',7-dihydroxy-5-hydroxymethyl-6,8-diprenylflavonoid, together with seven known flavonoids (3–9 were isolated from the aerial parts of Capsella bursa-pastoris (L. Medik., Brassicaceae, for the first time. The chemical structures of the purified compounds (1–9 were identified by their spectroscopic data and references. Moreover, compounds (1–9 were evaluated for their hepatoprotective activities against D-galactosamine induced toxicity in WB-F344 cells by using a MTT colorimetric method. As a result, compounds 2, 3, 6, and 9 (10 µM exhibited moderate hepatoprotective activities.

  5. Determination of free inositols and other low molecular weight carbohydrates in vegetables.

    Science.gov (United States)

    Hernández-Hernández, Oswaldo; Ruiz-Aceituno, Laura; Sanz, María Luz; Martínez-Castro, Isabel

    2011-03-23

    Different low molecular weight carbohydrates including saccharides, polyalcohols, sugar acids, and glycosides have been identified and quantified in different edible vegetables from Asteraceae, Amarantaceae, Amarylidaceae, Brassicaceae, Dioscoreaceae, and Solanaceae families by gas chromatography-mass spectrometry. Apart from glucose, fructose, and sucrose, other saccharides such as sedoheptulose in chicory, spinach, cabbage, purple yam, eggplant, radish, and oak leaf lettuce, rutinose in eggplant skin, and a glycosyl-inositol in spinach have been identified. chiro-Inositol was found in all vegetables of the Asteraceae family (3.1-32.6 mg 100 g(-1)), whereas scyllo-inositol was detected in those of purple yam, eggplant, artichoke, chicory, escarole, and endive (traces-23.2 mg 100 g(-1)). α-Galactosides, kestose, glucaric acid, and glycosyl-glycerols were also identified and quantified in some of the analyzed vegetables. Considering the bioactivity of most of these compounds, mainly chicory leaves, artichokes, lettuces, and purple yam could constitute beneficial sources for human health.

  6. Plant morphology and allometric relationships in competing and non-competing plants of Tagetes patula L.

    Directory of Open Access Journals (Sweden)

    Ingeborga Jarzyna

    2014-01-01

    Full Text Available Allometric relationships (defined as correlation coefficients between plant mass - stem diameter, plant mass - stem height and stem diameter - stem height in plants of Tagetes patula L. (Brassicaceae var. "Tangerine" were analyzed. Competing and non-competing plants were compared in a glasshouse experiment. Competing plants were grown in broad range of densities, from 200 to 6000 individuals • m-2. For non-competing plants no allometric relationships were observed, while for competing plants they were strong, irrespective of density treatment used. Gradual changes of plant morphology (plant mass, stem diameter, stem height and height/mass ratio with the increase of competition intensity were also analyzed.The present study clearly showed, that the intraspecific competition influenced allometric relationships between height, mass and stem diameter of Tagetes patula.

  7. Analysis of Pollen Collected by Andrena flavipes Panzer (Hymenoptera: Andrenidae in Sweet Cherry Orchards, Afyonkarahisar Province of Turkey

    Directory of Open Access Journals (Sweden)

    Yasemin Güler

    2010-01-01

    Full Text Available Andrena, which is the largest genus in the Andrenidae, is a very important genus for the pollination of fruit trees. Andrena flavipes Panzer is one of the most common species observed in the study area and can continue the flight activity even under low temperature. In this study, the pollen collected by A. flavipes was determined. In addition, the potential to carry sweet cherry pollen of the aforementioned species was also researched. For the pollen preparates, the scopae of 34 females were used. As a result of the diagnosis studies, it was determined that A. flavipes species collected the pollens of 13 families and that the dominant pollen group belonged to the Brassicaceae. It was ascertained that A. flavipes collected sweet cherry pollen and that the sweet cherry flowers do not represent a primary pollen source, however.

  8. Urinary diseases and ethnobotany among pastoral nomads in the Middle East

    Directory of Open Access Journals (Sweden)

    Abu-Rabia Aref

    2005-08-01

    Full Text Available Abstract This article is derived from a broad, twenty-year study of ethnobotany and folk medicine among pastoral nomads in the Middle East which took place from 1984 to 2004. The article presents examples of different treatments of diseases and disorders of the urinary tract carried out by healer herbalists. The preparation of remedies includes boiling infusions, extraction of dry or fresh leaves, flowers, seeds or whole plants. Some of these plants were used both as food and as medicine, by ingesting different parts of the plants, such as leaves, flowers, fruits, and so on, either while soft, cooked or dried. Data were collected by using unstructured interviews and by observation. These plants were identified by healers, patients, and university botanists. This paper identified eighty-five plant species, which belong to thirty-six families. The most representative families are: Asteraceae (8, Brassicaceae (6, Poaceae (6, Umbelliferae (6.

  9. Pollen Foraging by Honey Bees (Apis Mellifera L. in Greece: Botanical and Geographical Origin

    Directory of Open Access Journals (Sweden)

    Dimou Maria

    2014-12-01

    Full Text Available Pollen is very important for honey bee colony development and nutrition. It is also a valuable product for human consumption, considered to have high nutritional value. In this study, we performed melissopalynological analysis of 285 pollen load samples collected from 44 apiaries throughout Greece. The analysis revealed 229 plant taxa represented in total. The abundance of each pollen type varied among the geographical areas from which the samples were collected. We also observed variation among samples collected from the same geographical region. The most frequently found families were Fabaceae, Asteraceae and Rosaceae. The most frequently observed taxa were Brassicaceae, Carduus type, Cistus and Papaver rhoeas. Statistical analysis showed that the geographical classification of pollen samples among northern, central and southern Greece is possible.

  10. B-GATA transcription factors - insights into their structure, regulation and role in plant development

    Directory of Open Access Journals (Sweden)

    Claus eSchwechheimer

    2015-02-01

    Full Text Available GATA transcription factors are evolutionarily conserved transcriptional regulators that recognize promoter elements with a G-A-T-A core sequence. In comparison to animal genomes, the GATA transcription factor family in plants is comparatively large with approximately 30 members. In spite of a long-standing interest of plant molecular biologists in GATA factors, only research conducted in the last years has led to reliable insights into their functions during plant development. Here, we review the current knowledge on B-GATAs, one of four GATA factor subfamilies from Arabidopsis thaliana. We show that B-GATAs can be subdivided based on structural features and their biological function into family members with a C-terminal LLM- (leucine-leucine-methionine domain or an N-terminal HAN- (HANABA TARANU domain. The paralogous GNC (GATA, NITRATE-INDUCIBLE, CARBON-METABOLISM INVOLVED and CGA1/GNL (CYTOKININ-INDUCED GATA1/GNC-LIKE are introduced as LLM-domain containing B-GATAs from Arabidopsis that control germination, greening, senescence and flowering time downstream from several growth regulatory signals including light and the hormones gibberellin, auxin, and cytokinin. Arabidopsis HAN and its monocot-specific paralogs from rice (NECK LEAF1, maize (TASSEL SHEATH1, and barley (THIRD OUTER GLUME are HAN-domain-containing B-GATAs with a predominant role in embryo development and floral development. We also review GATA23, a regulator of lateral root initiation from Arabidopsis, that is closely related to GNC and GNL but has a degenerate LLM-domain that is seemingly specific for the Brassicaceae family. The Brassicaceae-specific GATA23 together with the above-mentioned monocot-specific HAN-domain GATAs provide evidence that neofunctionalization of the B-GATAs was used during plant evolution to expand the functional repertoire of these transcription factors.

  11. Sulfinylated azadecalins act as functional mimics of a pollen germination stimulant in Arabidopsis pistils.

    Science.gov (United States)

    Qin, Yuan; Wysocki, Ronald J; Somogyi, Arpad; Feinstein, Yelena; Franco, Jessica Y; Tsukamoto, Tatsuya; Dunatunga, Damayanthi; Levy, Clara; Smith, Steven; Simpson, Robert; Gang, David; Johnson, Mark A; Palanivelu, Ravishankar

    2011-12-01

    Polarized cell elongation is triggered by small molecule cues during development of diverse organisms. During plant reproduction, pollen interactions with the stigma result in the polar outgrowth of a pollen tube, which delivers sperm cells to the female gametophyte to effect double fertilization. In many plants, pistils stimulate pollen germination. However, in Arabidopsis, the effect of pistils on pollen germination and the pistil factors that stimulate pollen germination remain poorly characterized. Here, we demonstrate that stigma, style, and ovules in Arabidopsis pistils stimulate pollen germination. We isolated an Arabidopsis pistil extract fraction that stimulates Arabidopsis pollen germination, and employed ultra-high resolution electrospray ionization (ESI), Fourier-transform ion cyclotron resonance (FT-ICR) and MS/MS techniques to accurately determine the mass (202.126 Da) of a compound that is specifically present in this pistil extract fraction. Using the molecular formula (C10H19NOS) and tandem mass spectral fragmentation patterns of the m/z (mass to charge ratio) 202.126 ion, we postulated chemical structures, devised protocols, synthesized N-methanesulfinyl 1- and 2-azadecalins that are close structural mimics of the m/z 202.126 ion, and showed that they are sufficient to stimulate Arabidopsis pollen germination in vitro (30 μm stimulated approximately 50% germination) and elicit accession-specific response. Although N-methanesulfinyl 2-azadecalin stimulated pollen germination in three species of Lineage I of Brassicaceae, it did not induce a germination response in Sisymbrium irio (Lineage II of Brassicaceae) and tobacco, indicating that activity of the compound is not random. Our results show that Arabidopsis pistils promote germination by producing azadecalin-like molecules to ensure rapid fertilization by the appropriate pollen.

  12. Home Gardening Near a Mining Site in an Arsenic-Endemic Region of Arizona: Assessing Arsenic Exposure Dose and Risk via Ingestion of Home Garden Vegetables, Soils, and Water

    Science.gov (United States)

    Ramirez-Andreotta, Monica D.; Brusseau, Mark L.; Beamer, Paloma; Maier, Raina M.

    2013-01-01

    The human-health risk posed by gardening near the Iron King Mine and Humboldt Smelter Superfund Site in Arizona was characterized in this study. Residential soils were used in a greenhouse study to grow common household vegetables, and local residents, after training, collected soil, water, and vegetables samples from their household gardens. Concentrations of arsenic measured in water, soil, and vegetable samples were used in conjunction with reported US intake rates to calculate the daily dose, Incremental Excess Lifetime Cancer Risk (IELCR), and Hazard Quotient for arsenic. Relative arsenic intake dose decreased in order: water > garden soils > homegrown vegetables, and on average, each accounted for 77, 16, and 7% of a residential gardener’s daily arsenic intake dose. The IELCR ranges for vegetables, garden soils, and water were 10−8 to 10−4, 10−6 to 10−4, and 10−5 to 10−2, respectively. All vegetables (greenhouse and home garden) were grouped by scientific family, and the risk posed decreased as: Asteraceae >> Fabaceae > Amaranthaceae > Liliaceae > Brassicaceae > Solanaceae >> Cucurbitaceae. Correlations observed between concentrations of arsenic in vegetables and soils were used to estimate a maximum allowable level of arsenic in soil to limit the excess cancer risk to 10−6. The estimated values are 1.56 mg kg−1, 5.39 mg kg−1, 11.6 mg kg−1 and 12.4 mg kg−1 for the Asteraceae, Brassicaceae, Fabaceae, and Amaranthaceae families, respectively. It is recommended that home gardeners: sample their private wells annually, test their soils prior to gardening, and, if necessary, modify their gardening behavior to reduce incidental soil ingestion. This study highlights the importance of site-specific risk assessment, and the need for species-specific planting guidelines for communities. PMID:23562690

  13. A liquid chromatography-tandem mass spectrometric method for quantitative determination of native 5-methyltetrahydrofolate and its polyglutamyl derivatives in raw vegetables.

    Science.gov (United States)

    Wang, Chao; Riedl, Ken M; Schwartz, Steven J

    2010-11-01

    Folate deficiency is a prevalent phenomenon worldwide especially in underprivileged countries. Polyglutamyl 5-methyltetrahydrofolate (5MTHF) species are the naturally occurring principle folate in store-bought vegetables. Here we report a simple and complete extraction method for the determination of native polyglutamyl 5-methyltetrahydrofolate in vegetables using high performance liquid chromatography with tandem mass spectrometric detection (HPLC-MS/MS). Coarsely chopped samples (18 different vegetables) were steamed to inactivate glutamylase enzymes and liberate folate from binding proteins and extracted in a reducing buffer with (13)C(5) 5MTHF stable isotope added as internal standard. The polyglutamyl 5-methyltetrahydrofolate species were separated in 9 min on a C(18) column using a reversed phase system. HPLC eluate was interfaced with a triple quadrupole mass spectrometer operated in electrospray positive mode. The respective pseudomolecular cation of each polyglutamyl 5-methyltetrahydrofolate species was selected for fragmentation to a common daughter ion for detection. We quantitated polyglutamyl 5-methyltetrahydrofolate in store-bought vegetables from families Brassicaceae, Asteraceae and Amaranthaceae (including mustard greens, romaine lettuce and Swiss chard) of which most have not been quantitated previously. Most vegetables from Asteraceae and those from Amaranthaceae contained similar amounts of monoglutamyl 5MTHF and polyglutamyl 5MTHF while Brassicaceae were dominated by polyglutamyls and endive species (Asteraceae) contained mainly monoglutamyl 5MTHF. The precision of the method for the various polyglutamyl 5-methyltetrahydrofolate forms was 1-9% RSD, recovery 84-91%, limit of detection 64-658 fmol and limit of quantitation 193-1994 fmol. Herein we describe a rapid, sensitive and selective HPLC-MS/MS technique to quantitate polyglutamyl 5-methyltetrahydrofolate species. This method may be suitable for analyzing the polyglutamyl 5

  14. Are nuclear loci ideal for barcoding plants? A case study of genetic delimitation of two sister species using multiple loci and multiple intraspecific individuals

    Institute of Scientific and Technical Information of China (English)

    Qian WANG; Qiu-Shi YU; Jian-Quan LIU

    2011-01-01

    Considerable debate remains as to which DNA region should be used to barcode plants. Several different chloroplast (cp) DNA regions (rbcL, matK, and trnH-psbA) and nuclear ribosomal internal transcribed regions (ITS) have been suggested as suitable barcodes in plants. Recently, low-copy nuclear loci were also suggested to be potentially ideal barcode regions. The aim of the present study was to test the effectiveness of these proposed DNA fragments and five additional low-copy loci (CHS, DETl, COPl, PGICl, and RPS2; comprising both coding and non-coding regions) in barcoding closely related species. We examined the divergences within and between two species of Pugioniun (Brassicaceae). We failed to find any interspecific variation from three cpDNA fragments with which to discriminate the two species. However, a single base mutation in the internal transcribed spacer (ITS) could discriminate between the two species consistently. We found more variations among all individuals of the two species using each of the other five low-copy nuclear loci. However, only alleles from one locus (DET1) of the five low-copy loci related to flowering regulations was able to distinguish the sampled individuals into two species. We failed to amplify the corresponding fragments out of Brassicaceae using the designed DETl primers. We further discussed the discrimination power of different loci due to incomplete lineage sorting, gene flow, and species-specific evolution. Our results highlight the possibility of using the nuclear ITS as a core or complementary fragment to barcode recent diverged species.

  15. Novel bioresources for studies of Brassica oleracea: identification of a kale MYB transcription factor responsible for glucosinolate production.

    Science.gov (United States)

    Araki, Ryoichi; Hasumi, Akiko; Nishizawa, Osamu Ishizaki; Sasaki, Katsunori; Kuwahara, Ayuko; Sawada, Yuji; Totoki, Yasushi; Toyoda, Atsushi; Sakaki, Yoshiyuki; Li, Yimeng; Saito, Kazuki; Ogawa, Toshiya; Hirai, Masami Yokota

    2013-10-01

    Plants belonging to the Brassicaceae family exhibit species-specific profiles of glucosinolates (GSLs), a class of defence compounds against pathogens and insects. GSLs also exhibit various human health-promoting properties. Among them, glucoraphanin (aliphatic 4-methylsulphinylbutyl GSL) has attracted the most attention because it hydrolyses to form a potent anticancer compound. Increased interest in developing commercial varieties of Brassicaceae crops with desirable GSL profiles has led to attempts to identify genes that are potentially valuable for controlling GSL biosynthesis. However, little attention has been focused on genes of kale (Brassica oleracea var. acephala). In this study, we established full-length kale cDNA libraries containing 59 904 clones, which were used to generate an expressed sequence tag (EST) data set with 119 204 entries. The EST data set clarified genes related to the GSL biosynthesis pathway in kale. We specifically focused on BoMYB29, a homolog of Arabidopsis MYB29/PMG2/HAG3, not only to characterize its function but also to demonstrate its usability as a biological resource. BoMYB29 overexpression in wild-type Arabidopsis enhanced the expression of aliphatic GSL biosynthetic genes and the accumulation of aliphatic GSLs. When expressed in the myb28myb29 mutant, which exhibited no detectable aliphatic GSLs, BoMYB29 restored the expression of biosynthetic genes and aliphatic GSL accumulation. Interestingly, the ratio of methylsulphinyl GSL content, including glucoraphanin, to that of methylthio GSLs was greatly increased, indicating the suitability of BoMYB29 as a regulator for increasing methylsulphinyl GSL content. Our results indicate that these biological resources can facilitate further identification of genes useful for modifications of GSL profiles and accumulation in kale.

  16. De novo assembly and characterization of the complete chloroplast genome of radish (Raphanus sativus L.).

    Science.gov (United States)

    Jeong, Young-Min; Chung, Won-Hyung; Mun, Jeong-Hwan; Kim, Namshin; Yu, Hee-Ju

    2014-11-01

    Radish (Raphanus sativus L.) is an edible root vegetable crop that is cultivated worldwide and whose genome has been sequenced. Here we report the complete nucleotide sequence of the radish cultivar WK10039 chloroplast (cp) genome, along with a de novo assembly strategy using whole genome shotgun sequence reads obtained by next generation sequencing. The radish cp genome is 153,368 bp in length and has a typical quadripartite structure, composed of a pair of inverted repeat regions (26,217 bp each), a large single copy region (83,170 bp), and a small single copy region (17,764 bp). The radish cp genome contains 87 predicted protein-coding genes, 37 tRNA genes, and 8 rRNA genes. Sequence analysis revealed the presence of 91 simple sequence repeats (SSRs) in the radish cp genome. Phylogenetic analysis of 62 protein-coding gene sequences from the 17 cp genomes of the Brassicaceae family suggested that the radish cp genome is most closely related to the cp genomes of Brassica rapa and Brassicanapus. Comparisons with the B. rapa and B. napus cp genomes revealed highly divergent intergenic sequences and introns that can potentially be developed as diagnostic cp markers. Synonymous and nonsynonymous substitutions of cp genes suggested that nucleotide substitutions have occurred at similar rates in most genes. The complete sequence of the radish cp genome would serve as a valuable resource for the development of new molecular markers and the study of the phylogenetic relationships of Raphanus species in the Brassicaceae family.

  17. Home gardening near a mining site in an arsenic-endemic region of Arizona: assessing arsenic exposure dose and risk via ingestion of home garden vegetables, soils, and water.

    Science.gov (United States)

    Ramirez-Andreotta, Monica D; Brusseau, Mark L; Beamer, Paloma; Maier, Raina M

    2013-06-01

    The human-health risk posed by gardening near a legacy mine and smelter in an arsenic-endemic region of Arizona was characterized in this study. Residential soils were used in a greenhouse study to grow common vegetables, and local residents, after training, collected soil, water, and vegetables samples from their home gardens. Concentrations of arsenic measured in water, soil, and vegetable samples were used in conjunction with reported US intake rates to calculate the daily dose, Incremental Excess Lifetime Cancer Risk (IELCR), and Hazard Quotient for arsenic. Relative arsenic intake dose decreased in order: water>garden soils>homegrown vegetables, and on average, each accounted for 77, 16, and 7% of a residential gardener's daily arsenic intake dose. The IELCR ranges for vegetables, garden soils, and water were 10(-8) to 10(-4), 10(-6) to 10(-4), and 10(-5) to 10(-2), respectively. All vegetables (greenhouse and home garden) were grouped by scientific family, and the risk posed decreased as: Asteraceae≫Fabaceae>Amaranthaceae>Liliaceae>Brassicaceae>Solanaceae≫Cucurbitaceae. Correlations observed between concentrations of arsenic in vegetables and soils were used to estimate a maximum allowable level of arsenic in soil to limit the excess cancer risk to 10(-6). The estimated values are 1.56 mg kg(-1), 5.39 mg kg(-1), 11.6 mg kg(-1) and 12.4 mg kg(-1) for the Asteraceae, Brassicaceae, Fabaceae, and Amaranthaceae families, respectively. It is recommended that home gardeners: sample their private wells annually, test their soils prior to gardening, and, if necessary, modify their gardening behavior to reduce incidental soil ingestion. This study highlights the importance of site-specific risk assessment, and the need for species-specific planting guidelines for communities.

  18. The C-terminal extension peptide of non-photoconvertible water-soluble chlorophyll-binding proteins (Class II WSCPs) affects their solubility and stability: comparative analyses of the biochemical and chlorophyll-binding properties of recombinant Brassica, Raphanus and Lepidium WSCPs with or without their C-terminal extension peptides.

    Science.gov (United States)

    Takahashi, Shigekazu; Uchida, Akira; Nakayama, Katsumi; Satoh, Hiroyuki

    2014-02-01

    Numerous members of the Brassicaceae possess non-photoconvertible water-soluble chlorophyll (Chl)-binding proteins (Class II WSCPs), which function as Chl scavengers during cell disruption caused by wounding, pest/pathogen attacks, and/or environmental stress. Class II WSCPs have two extension peptides, one at the N-terminus and one at the C-terminus. The N-terminal peptide acts as a signal peptide, targeting the protein to the endoplasmic reticulum body, a unique defensive organelle found only in the Brassicaceae. However, the physiological and biochemical functions of the C-terminal extension peptide had not been characterized previously. To investigate the function of the C-terminal extension peptide, we produced expression constructs of recombinant WSCPs with or without the C-terminal extension peptide. The WSCPs used were of Brussels sprouts (Brassica oleracea), Japanese wild radish (Raphanus sativus) and Virginia pepperweed (Lepidium virginicum). The solubility of all of the WSCPs with the C-terminal extension peptide was drastically lower than that of the recombinant WSCPs without the C-terminal extension peptide. In addition, the stability of the reconstituted WSCPs complexes with the C-terminal extension peptide was altered compared with that of the proteins without the C-terminal extension peptide. These finding indicate that the C-terminal extension peptide affects not only the solubility, but also the stability of Class II WSCP. Furthermore, we characterized the Chl-binding properties of the recombinant WSCP from Japanese wild radish (RshWSCP-His) in a 40 % methanol solution. An electrophoretic mobility shift assay revealed that RshWSCP-His required a half-molar ratio of Chls to form a tetramer.

  19. Bioinformatics Reveal Five Lineages of Oleosins and the Mechanism of Lineage Evolution Related to Structure/Function from Green Algae to Seed Plants.

    Science.gov (United States)

    Huang, Ming-Der; Huang, Anthony H C

    2015-09-01

    Plant cells contain subcellular lipid droplets with a triacylglycerol matrix enclosed by a layer of phospholipids and the small structural protein oleosin. Oleosins possess a conserved central hydrophobic hairpin of approximately 72 residues penetrating into the lipid droplet matrix and amphipathic amino- and carboxyl (C)-terminal peptides lying on the phospholipid surface. Bioinformatics of 1,000 oleosins of green algae and all plants emphasizing biological implications reveal five oleosin lineages: primitive (in green algae, mosses, and ferns), universal (U; all land plants), and three in specific organs or phylogenetic groups, termed seed low-molecular-weight (SL; seed plants), seed high-molecular-weight (SH; angiosperms), and tapetum (T; Brassicaceae) oleosins. Transition from one lineage to the next is depicted from lineage intermediates at junctions of phylogeny and organ distributions. Within a species, each lineage, except the T oleosin lineage, has one to four genes per haploid genome, only approximately two of which are active. Primitive oleosins already possess all the general characteristics of oleosins. U oleosins have C-terminal sequences as highly conserved as the hairpin sequences; thus, U oleosins including their C-terminal peptide exert indispensable, unknown functions. SL and SH oleosin transcripts in seeds are in an approximately 1:1 ratio, which suggests the occurrence of SL-SH oleosin dimers/multimers. T oleosins in Brassicaceae are encoded by rapidly evolved multitandem genes for alkane storage and transfer. Overall, oleosins have evolved to retain conserved hairpin structures but diversified for unique structures and functions in specific cells and plant families. Also, our studies reveal oleosin in avocado (Persea americana) mesocarp and no acyltransferase/lipase motifs in most oleosins.

  20. A comprehensive set of transcript sequences of the heavy metal hyperaccumulator Noccaea caerulescens

    Directory of Open Access Journals (Sweden)

    YA-FEN eLIN

    2014-06-01

    Full Text Available Noccaea caerulescens is an extremophile plant species belonging to the Brassicaceae family. It has adapted to grow on soils containing high, normally toxic, concentrations of metals such as nickel, zinc and cadmium. Next to being extremely tolerant to these metals, it is one of the few species known to hyperaccumulate these metals to extremely high concentrations in their aboveground biomass. In order to provide additional molecular resources for this model metal hyperaccumulator species to study and understand the mechanism of heavy metal exposure adaptation, we aimed to provide a comprehensive database of transcript sequences for N. caerulescens. In this study, 23830 transcript sequences (isotigs with an average length of 1025 bps were determined for roots, shoots and inflorescences of N. caerulescens accession ‘Ganges’ by Roche GS-FLEX 454 pyrosequencing. These isotigs were grouped into 20,378 isogroups, representing potential genes. This is a large expansion of the existing N. caerulescens transcriptome set consisting of 3705 unigenes. When compared to a Brassicaceae proteome set, 22,232 (93.2% of the N. caerulescens isotigs (corresponding to 19191 isogroups had a significant match and could be annotated accordingly. Of the remaining sequences, 98 isotigs resembled non-plant sequences and 1386 had no significant similarity to any sequence in the GenBank database. Among the annotated set there were many isotigs with similarity to metal homeostasis genes or genes for glucosinolate biosynthesis. Only for transcripts similar to Metallothionein3 (MT3, clear evidence for an additional copy was found. This comprehensive set of transcripts is expected to further contribute to the discovery of mechanisms used by N. caerulescens to adapt to heavy metal exposure.

  1. Effect of thallium fractions in the soil and pollution origins on Tl uptake by hyperaccumulator plants: a key factor for the assessment of phytoextraction.

    Science.gov (United States)

    Al-Najar, H; Kaschl, A; Schulz, R; Römheld, V

    2005-01-01

    Phytoremediation is often discussed as a means of extracting trace metals in excess in the soil, but to increase its efficiency a better understanding of the factors controlling plant uptake is required. The main objective of this study was to examine the effect of origin (anthropogenic vs. geogenic) and mobility of thallium (Tl) in the rhizosphere on Tl uptake. Two Tl-hyperaccumulating Brassicaceae species, kale (Brassica oleracea acephala L. cv. Winterbor F1) and candytuft (Iberis intermedia Guers.), were grown in a rhizobox system to investigate the dynamics of Tl in the rhizosphere soil. Four different soils were used. Two soils contained high Tl amounts due to anthropogenic sources (emissions from a cement plant and mining activities). High Tl content in the two other soils was due to a high rock content (geogenic origin). On completion of growth in the rhizoboxes, the depletion of Tl in seven different chemical fractions, determined by sequential extraction, was compared to the plant uptake. Most of the Tl taken up was derived from the so-called "easily accessible" fractions in both soils with geogenic Tl as well as in the soils polluted by mining activities. Due to the small amounts of easily accessible Tl in the geogenic soils, Tl uptake by Brassicaceae was low. On the other hand, for the air emission-polluted soil, a high depletion of Tl from "less accessible" fractions was observed in addition to depletion of the easily accessible fractions. Hence, the latter soil demonstrated the highest potential for effective soil decontamination by phytoextraction within an appropriate time frame.

  2. An ethnomedicinal survey and documentation of important medicinal folklore food phytonims of flora of Samahni valley, (Azad Kashmir) Pakistan.

    Science.gov (United States)

    Ishtiaq, Muhammad; Hanif, Wajahat; Khan, M A; Ashraf, M; Butt, Ansar M

    2007-07-01

    ; Veronica anthelmintica for bandage of broken bones and Withania coagulans is used to treat small pox. Many wild plants are eaten green and raw as salad, or in boiled form of soup as blood and intestine cleansing tonics. Moreover, some plants are spiritually recorded as sacred and used as ritual plant for good omens or against the evil eye and removal of giant. About 95 species of 38 families were recorded to be important part of phyto heritage of folk pharmacopoeia of Samahni valley. Among most frequent used families are Papilionaceae 9.47%, Solanaceae and Poaceae 8.42% each, Cucurbitaceae 7.36% and Brassicaceae and Rosaceae 6.31% each. Among the surveyed families used to treat various diseases, Solanaceae is at first rank with 9.74%, Brassicaceae 8.23% and Cucurbitaceae 7.39% subsequently. Most commonly used families with highest percentage of plants used as food medicines are Solanaceae (11.37%), Brassicaceae (8.38%) and Papilionaceae (7.18%) respectively. Most frequent plant parts used are; roots, leaves, seeds and flowers while popular forms of plants uses are decoction, poultice, infusions, soups and raw form as salad. Importance of ethnobotanical inventory constructed from ethnomedicinal uses and folklore phytonims of flora in perspectives of initiative for future phytochemical and pharmacological research on these taxa to develop and discover of new drugs is present and discussed.

  3. Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryza and their phylogenetic utility across various taxonomic levels

    Directory of Open Access Journals (Sweden)

    Ma Hong

    2010-02-01

    Full Text Available Abstract Background Although the overwhelming majority of genes found in angiosperms are members of gene families, and both gene- and genome-duplication are pervasive forces in plant genomes, some genes are sufficiently distinct from all other genes in a genome that they can be operationally defined as 'single copy'. Using the gene clustering algorithm MCL-tribe, we have identified a set of 959 single copy genes that are shared single copy genes in the genomes of Arabidopsis thaliana, Populus trichocarpa, Vitis vinifera and Oryza sativa. To characterize these genes, we have performed a number of analyses examining GO annotations, coding sequence length, number of exons, number of domains, presence in distant lineages, such as Selaginella and Physcomitrella, and phylogenetic analysis to estimate copy number in other seed plants and to demonstrate their phylogenetic utility. We then provide examples of how these genes may be used in phylogenetic analyses to reconstruct organismal history, both by using extant coverage in EST databases for seed plants and de novo amplification via RT-PCR in the family Brassicaceae. Results There are 959 single copy nuclear genes shared in Arabidopsis, Populus, Vitis and Oryza ["APVO SSC genes"]. The majority of these genes are also present in the Selaginella and Physcomitrella genomes. Public EST sets for 197 species suggest that most of these genes are present across a diverse collection of seed plants, and appear to exist as single or very low copy genes, though exceptions are seen in recently polyploid taxa and in lineages where there is significant evidence for a shared large-scale duplication event. Genes encoding proteins localized in organelles are more commonly single copy than expected by chance, but the evolutionary forces responsible for this bias are unknown. Regardless of the evolutionary mechanisms responsible for the large number of shared single copy genes in diverse flowering plant lineages, these

  4. Estudio de la composición en ácidos grasos del aceite de las semillas en algunas plantas silvestres españolas

    Directory of Open Access Journals (Sweden)

    Vioque, J.

    1994-06-01

    Full Text Available The fatty acid composition of 34 species of plants from a variety of families that grow wild in the Iberian Peninsula was analysed. The aim to the survey was to indentify oils that contain a mix of fatty acids that from a qualitative or quantitative point of view have a commercial value. Because of the diverse taxonomic origin of the samples, the oil content between species was very variable, fluctuating between an average value of 3.4% in the Caryophyllaceae and 31.1% in Euphorbiaceae. Like the oil content, the fatty acid composition was quite variable, but, in general, the main fatty acids were palmitic, oleic, linoleic and linolenic acid, while in the Brassicaceae and in the Apiaceae erucic acid and petroselinic acid were the principal fatty acids respectively.

    Se ha estudiado la composición en ácidos grasos del aceite de las semillas en 34 plantas silvestres de la Península Ibérica. Se pretende la obtención de aceites con una composición en ácidos grasos que cualitativa o cuantitativamente puedan resultar de interés desde un punto de vista comercial. Debido al origen taxonómico tan diverso de las muestras, el contenido en aceite resulta muy variable, oscilando entre un valor medio del 3.4% en las Caryophyllaceae y el 31.1% de media en las Euphorbiaceae. Como el contenido en aceite, la composición en ácidos grasos es también bastante Variable, pero en general los principales ácidos grasos son palmítico, oleico, linoleico y linolénico, mientras que en las Brassicaceae domina el ácido erúcico y en las Apiaceae el ácido petroselínico.

  5. Pollen harvest by Apis mellifera L. (Hymenoptera: Apidae in the Dourados region, Mato Grosso do Sul state (Brazil Pólen coletado por Apis mellifera L. (Hymenoptera: Apidae na região de Dourados, estado de Mato Grosso do Sul (Brasil

    Directory of Open Access Journals (Sweden)

    D'Apolito

    2010-12-01

    Full Text Available We present data on the pollen harvest by Apismellifera L. at a central-western Brazil site not yet studied. Corbiculae pollen loads were collected during one year in front of the hive, acetolysed and slides mounted for optical microscopy. Identification followed comparisons with a local pollen collection. Forty-two pollen types were utilized by the bee; the most important families were Myrtaceae, Asteraceae, Euphorbiaceae, Brassicaceae and Poaceae. The genus/species level ranking of relative importance showed Eucalyptus (19%, Raphanus raphanistrum (13%, Poaceae type 2 (7.5%, Jatropha cf. gossypiifolia (7% and Sapium glandulatum (6.5%. Overall, the majority of pollen types (80% were not abundantly harvested, and a minority (4% reached values of 10%. Given that the study area has cultivated plants and not natural vegetation, we indicate most of the identified species as manageable and point out that weedy vegetation can be an important food source for bees since it frequently occurred in the pollen spectra even within a totally cultivated area.Apresentamos dados sobre a coleta de pólen por Apis mellifera L. em uma localidade no centro-oeste do Brasil, ainda não estudada. Cargas corbiculares de pólen foram coletadas durante um ano em frente ao ninho, acetolisadas e montadas em lâminas para microscopia óptica. A identificação foi feita por comparação com uma coleção de referência local. Quarenta e dois tipos polínicos foram utilizados pelas abelhas; as famílias mais importantes foram Myrtaceae, Asteraceae, Euphorbiaceae, Brassicaceae e Poaceae. O ranqueamento de importância relativa para gênero/espécie mostrou Eucalyptus (19%, Raphanus raphanistrum (13%, Poaceae tipo 2 (7,5%, Jatropha cf. gossypiifolia (7% e Sapium glandulatum (6,5%. No geral, a maioria dos recursos (80% não foi utilizada com abundância, e uma minoria (4% alcançou valores de 10%. Dado que a área de estudo não possui uma vegetação natural, mas cultivares, n

  6. Cannibalism studies on eggs and newly hatched caterpillars in a wild population of Ascia monuste (Godart (Lepidoptera, Pieridae

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    Rosana C. Zago-Braga

    2004-01-01

    Full Text Available Ascia monuste (Godart, also known as cabbage caterpillar, is considered herbivorous and specialist in Brassicaceae; however, it performs cannibalism. Experiments carried out in this work aimed to quantify the cannibalism occurrence in A. monuste, to verify whether cannibalism interferes in the species performance and to check whether cannibalism is influenced by the population size. The parameters used in order to evaluate the performance were time of development, adults weight and size, fecundity, oviposition and survival rate. Cannibalism occurred in all larval instars. There was a tendency to increase the cannibalism practice as the number of co-specific increased (potential preys. Cannibalism was more intense in larvae at the end of larval development. Generally, cannibalism did not interfere in the population performance. The most probable hypothesis for the occurrence of cannibalism in the conditions here studied would be the hypothesis of cannibalism as having the function of population control.Estudos do canibalismo de ovos e lagartas recém-eclodidas em uma população selvagem de Ascia monuste (Godart (Lepidoptera, Pieridae. Ascia monuste, conhecida como lagarta da couve, é especialista em Brassicaceae e considerada herbívora; no entanto, pratica canibalismo. Os experimentos realizados neste trabalho visaram quantificar a ocorrência de canibalismo em A. monuste, verificar se o canibalismo interfere na performance da espécie e se o canibalismo é influenciado pelo tamanho da população. Os parâmetros utilizados para avaliar a performance foram tempo de desenvolvimento, tamanho e peso do adulto, fecundidade, oviposição e sobrevivência. O canibalismo ocorreu em todos os ínstares larvais. Houve uma tendência de aumento da prática de canibalismo com o aumento do número de coespecíficos (presas potenciais. O canibalismo ocorreu com maior intensidade em larvas no final do desenvolvimento larval. De um modo geral, o canibalismo n

  7. Palinologia do componente herbáceo na atmosfera de Caxias do Sul, RS, Brasil Palinology of the herbaceous component in the atmosphere of Caxias do Sul, Rio Grande do Sul State, Brazil

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    Sandra Maria Vergamini

    2006-12-01

    Full Text Available Este estudo foi realizado na cidade de Caxias do Sul de 1/janeiro/2001 a 31/dezembro/2002 e objetivou identificar os tipos polínicos de táxons herbáceos presentes na atmosfera e suas oscilações sazonais. A cidade está localizada na Encosta Superior Nordeste, Estado do Rio Grande do Sul. Seu clima é tropical pluvisazonal e apresenta três diferentes tipos de vegetação: Floresta Ombrófila Mista, Floresta Decidual e Campo. O monitoramento polínico foi realizado utilizando o captador volumétrico de sucção Burkard®, instalado no topo do Hospital Geral a uma altura aproximada de 20 m. Durante o período de estudo foram identificados 40 tipos polínicos, sendo 11 de táxons herbáceos, representando 23,22% do total de grãos coletados. A concentração máxima das táxons herbáceos registrou-se nos meses de outubro e novembro. O tipo polínico Poaceae R.Brown apresentou a maior incidência, seguido por Cyperaceae Juss., Plantago L., Amaranthus L., Rumex L., Iridaceae Juss., Brassicaceae Burnett, Apiaceae Lindl., Alternanthera Forssk., Convolvulaceae Juss. e Caryophyllaceae Juss.This study was carried out in the city of Caxias do Sul, from January 1, 2001 to December 31, 2002 and aimed to identify pollen types and seasonal fluctuation of herbaceous taxa in the atmosphere. The city is located on the Upper Northeast Slopes in Rio Grande do Sul State. The climate is tropical with seasonal rainfall and there are three different types of vegetation: mixed ombrophilous forest, deciduous forest and grassland. Pollen monitoring was done with a Burkard® volumetric spore-trap sampler placed on top of the Hospital Geral, about 20m above ground level. During the study period 40 pollen types were identified, 11 from herbaceous taxa, which represents 23.22% of the total number of grains collected. Maximum concentration of herbaceous taxa was registered in October and November. The Poaceae R.Brown pollen type had the highest incidence, followed by

  8. Repellency, toxicity, and oviposition inhibition of vegetable extracts against greenhouse whitefly Trialeurodes vaporariorum (Westwood (Hemiptera: Aleyrodidae

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    Edgar Eduardo Mendoza-Garcia

    2014-03-01

    Full Text Available In a search for sustainable options of greenhouse whitefly Trialeurodes vaporariorum (Westwood management, the toxic and/or repellent potential of water, ethanolic, and acetonic extracts of Ambrosia artemisiifolia L. (Asteraceae, Comocladia engleriana Loes (Anacardiaceae, Piper auritum Kunth (Piperaceae, Raphanus raphanistrum L. (Brassicaceae, and Taraxacum officinale F.H. Wigg. aggr.* (Asteraceae were evaluated. Repellency was assessed by the cylinder method (olfactometer, while toxicity and oviposition inhibition were assessed by the leaf immersion method. Acetonic extracts did not cause any repellent or insecticidal effect. In contrast, 200 mg mL-1 water and ethanolic extracts of R. raphanistrum and ethanolic extract of A. artemisiifolia had the highest repellent activity (76%, 72%, and 69%, respectively although their activity decreased gradually over time. Ethanolic extracts of P. auritum (66% and R. raphanistrum (56% at 200 mg mL¹ were highlighted as being toxic, while the most effective in inhibiting oviposition were water extracts of R. raphanistrum (76.1% and P. auritum (72.0% and ethanolic extract of P. auritum (69.5%; however, concentrations lower than 60 mg mL-1 caused oviposition stimulation. Our results suggest that water and ethanolic extracts of R. raphanistrum and P. auritum represent a useful tool in integrated whitefly management.

  9. Consumers’ Willingness to Pay for Cabbage with Minimized Pesticide Residues in Southern Benin

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    Faustin Vidogbéna

    2015-10-01

    Full Text Available Cabbage (Brassicaceae is one of the most frequently consumed exotic vegetables in Benin and also the most affected by insects. To meet growing food demand, farmers rely heavily on synthetic pesticides that are harmful for themselves, consumers and the environment. Integrated pest management has been proposed as the means to improve vegetable productivity and quality in many developing countries. One approach is to substitute pesticides with physical barriers to insects, like nets. Here, we assess consumers’ perceptions about cabbage and their purchasing behavior towards cabbage that was produced using these nets in two major cities in Benin. Results indicate that consumers are aware of the health risks associated with intensive use of pesticides but were not able to recognize the quality difference between cabbage produced under nets from those using pesticides. All consumers were willing to pay a price premium for cabbage with minimized pesticides residues compared with conventionally produced cabbage, the average premium being 38%. Women, older, highly educated consumers and those able to distinguish cabbage qualities were willing to pay the most. We suggest that farmers will obtain higher prices if their production of cabbage with preferred characteristics is accompanied by an improved marketing strategy.

  10. Inducible Transposition of a Heat-Activated Retrotransposon in Tissue Culture.

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    Masuta, Yukari; Nozawa, Kosuke; Takagi, Hiroki; Yaegashi, Hiroki; Tanaka, Keisuke; Ito, Tasuku; Saito, Hideyuki; Kobayashi, Hisato; Matsunaga, Wataru; Masuda, Seiji; Kato, Atsushi; Ito, Hidetaka

    2016-12-23

    A transposition of a heat-activated retrotransposon named ONSEN required compromise of a small RNA-mediated epigenetic regulation that includes RNA-directed DNA methylation (RdDM) machinery after heat treatment. In the current study, we analyzed the transcriptional and transpositional activation of ONSEN to better understand the underlying molecular mechanism involved in the maintenance and/or induction of transposon activation in plant tissue culture. We found the transposition of heat-primed ONSEN during tissue culture independently of RdDM mutation. The heat activation of ONSEN transcripts was not significantly up-regulated in tissue culture compared with that in heat-stressed seedlings, indicating that the transposition of ONSEN was regulated independently of the transcript level. RdDM-related genes were up-regulated by heat stress in both tissue culture and seedlings. The level of DNA methylation of ONSEN did not show any change in tissue culture, and the amount of ONSEN-derived small RNAs was not affected by heat stress. The results indicated that the transposition of ONSEN was regulated by an alternative mechanism in addition to the RdDM-mediated epigenetic regulation in tissue culture. We applied the tissue culture-induced transposition of ONSEN to Japanese radish, an important breeding species of the family Brassicaceae. Several new insertions were detected in a regenerated plant derived from heat-stressed tissues and its self-fertilized progeny, revealing the possibility of molecular breeding without genetic modification.

  11. Glucosinolate Profile of Croatian Stenoendemic Plant Fibigia triquetra (DC. Boiss. ex Prantl.

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    Ivica Blažević

    2015-12-01

    Full Text Available As part of our ongoing investigation of the stenoendemic plants belonging to the Brassicaceae family, we report on the chemistry of Fibigia triquetra (DC. Boiss. ex Prantl for the first time. Different plant parts (flower, leaf, stem, and seed of F. triquetra were characterized and quantified for glucosinolates (GLs according to the ISO 9167-1 EU official method based on the HPLC analysis of desulfo-GLs. A taxonomic screening showed that F. triquetra contained relatively high levels of C-4 GLs, namely but-3-enyl GL (gluconapin, 1a, 4-methylsulfanylbutyl GL (glucoerucin, 3a, and 4-methylsulfinylbutyl GL (glucoraphanin, 5a. GC-MS analysis of the volatile fractions obtained after enzyme hydrolysis and/or HPLC-ESI-MS of intact GLs confirmed the GL profile. Four minor GLs, namely isopropyl GL (glucoputranjivin, 6a, sec-butyl GL (glucocochlearin, 7a, pent-4-enyl GL (glucobrassicanapin, 2a, and 5-methylsulfanylpentyl GL (glucoberteroin, 4a were also identified and quantified while 4-methylpentyl GL, 5-methylhexyl GL, and n-heptyl GL, were tentatively identified by GC-MS of their degradation products. Based on the major, as well as the minor GLs, this study shows differences in chemotaxonomy between F. triquetra and the related Degenia velebitica (Degen Hayek as well as other investigated species of the genus Fibigia.

  12. The fate of tandemly duplicated genes assessed by the expression analysis of a group of Arabidopsis thaliana RING-H2 ubiquitin ligase genes of the ATL family.

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    Aguilar-Hernández, Victor; Guzmán, Plinio

    2014-03-01

    Gene duplication events exert key functions on gene innovations during the evolution of the eukaryotic genomes. A large portion of the total gene content in plants arose from tandem duplications events, which often result in paralog genes with high sequence identity. Ubiquitin ligases or E3 enzymes are components of the ubiquitin proteasome system that function during the transfer of the ubiquitin molecule to the substrate. In plants, several E3s have expanded in their genomes as multigene families. To gain insight into the consequences of gene duplications on the expansion and diversification of E3s, we examined the evolutionary basis of a cluster of six genes, duplC-ATLs, which arose from segmental and tandem duplication events in Brassicaceae. The assessment of the expression suggested two patterns that are supported by lineage. While retention of expression domains was observed, an apparent absence or reduction of expression was also inferred. We found that two duplC-ATL genes underwent pseudogenization and that, in one case, gene expression is probably regained. Our findings provide insights into the evolution of gene families in plants, defining key events on the expansion of the Arabidopsis Tóxicos en Levadura family of E3 ligases.

  13. Assembly of water-soluble chlorophyll-binding proteins with native hydrophobic chlorophylls in water-in-oil emulsions.

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    Bednarczyk, Dominika; Takahashi, Shigekazu; Satoh, Hiroyuki; Noy, Dror

    2015-03-01

    The challenges involved in studying cofactor binding and assembly, as well as energy- and electron transfer mechanisms in the large and elaborate transmembrane protein complexes of photosynthesis and respiration have prompted considerable interest in constructing simplified model systems based on their water-soluble protein analogs. Such analogs are also promising templates and building blocks for artificial bioinspired energy conversion systems. Yet, development is limited by the challenge of introducing the essential cofactors of natural proteins that are highly water-insoluble into the water-soluble protein analogs. Here we introduce a new efficient method based on water-in-oil emulsions for overcoming this challenge. We demonstrate the effectiveness of the method in the assembly of native chlorophylls with four recombinant variants of the water-soluble chlorophyll-binding protein of Brassicaceae plants. We use the method to gain new insights into the protein-chlorophyll assembly process, and demonstrate its potential as a fast screening system for developing novel chlorophyll-protein complexes.

  14. Water-Soluble Chlorophyll Protein (WSCP) Stably Binds Two or Four Chlorophylls.

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    Palm, Daniel M; Agostini, Alessandro; Tenzer, Stefan; Gloeckle, Barbara M; Werwie, Mara; Carbonera, Donatella; Paulsen, Harald

    2017-03-28

    Water-soluble chlorophyll proteins (WSCPs) of class IIa from Brassicaceae form tetrameric complexes containing one chlorophyll (Chl) per apoprotein but no carotenoids. The complexes are remarkably stable toward dissociation and protein denaturation even at 100 °C and extreme pH values, and the Chls are partially protected against photooxidation. There are several hypotheses that explain the biological role of WSCPs, one of them proposing that they function as a scavenger of Chls set free upon plant senescence or pathogen attack. The biochemical properties of WSCP described in this paper are consistent with the protein acting as an efficient and flexible Chl scavenger. At limiting Chl concentrations, the recombinant WSCP apoprotein binds substoichiometric amounts of Chl (two Chls per tetramer) to form complexes that are as stable toward thermal dissociation, denaturation, and photodamage as the fully pigmented ones. If more Chl is added, these two-Chl complexes can bind another two Chls to reach the fully pigmented state. The protection of WSCP Chls against photodamage has been attributed to the apoprotein serving as a diffusion barrier for oxygen, preventing its access to triplet excited Chls and, thus, the formation of singlet oxygen. By contrast, the sequential binding of Chls by WSCP suggests a partially open or at least flexible structure, raising the question of how WSCP photoprotects its Chls without the help of carotenoids.

  15. Hybrid apomicts trapped in the ecological niches of their sexual ancestors.

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    Mau, Martin; Lovell, John T; Corral, José M; Kiefer, Christiane; Koch, Marcus A; Aliyu, Olawale M; Sharbel, Timothy F

    2015-05-01

    Asexual reproduction is expected to reduce the adaptive potential to novel or changing environmental conditions, restricting or altering the ecological niche of asexual lineages. Asexual lineages of plants and animals are typically polyploid, an attribute that may influence their genetic variation, plasticity, adaptive potential, and niche breadth. The genus Boechera (Brassicaceae) represents an ideal model to test the relative ecological and biogeographic impacts of reproductive mode and ploidy because it is composed of diploid sexual and both diploid and polyploid asexual (i.e., apomictic) lineages. Here, we demonstrate a strong association between a transcriptionally conserved allele and apomictic seed formation. We then use this allele as a proxy apomixis marker in 1,649 accessions to demonstrate that apomixis is likely to be a common feature across the Boechera phylogeny. Phylogeographic analyses of these data demonstrate (i) species-specific niche differentiation in sexuals, (ii) extensive niche conservation between differing reproductive modes of the same species, (iii) ploidy-specific niche differentiation within and among species, and (iv) occasional niche drift between apomicts and their sexual ancestors. We conclude that ploidy is a substantially stronger and more common driver of niche divergence within and across Boechera species although variation in both traits may not necessarily lead to niche evolution on the species scale.

  16. Comprehensive analysis of the flowering genes in Chinese cabbage and examination of evolutionary pattern of CO-like genes in plant kingdom

    Science.gov (United States)

    Song, Xiaoming; Duan, Weike; Huang, Zhinan; Liu, Gaofeng; Wu, Peng; Liu, Tongkun; Li, Ying; Hou, Xilin

    2015-09-01

    In plants, flowering is the most important transition from vegetative to reproductive growth. The flowering patterns of monocots and eudicots are distinctly different, but few studies have described the evolutionary patterns of the flowering genes in them. In this study, we analysed the evolutionary pattern, duplication and expression level of these genes. The main results were as follows: (i) characterization of flowering genes in monocots and eudicots, including the identification of family-specific, orthologous and collinear genes; (ii) full characterization of CONSTANS-like genes in Brassica rapa (BraCOL genes), the key flowering genes; (iii) exploration of the evolution of COL genes in plant kingdom and construction of the evolutionary pattern of COL genes; (iv) comparative analysis of CO and FT genes between Brassicaceae and Grass, which identified several family-specific amino acids, and revealed that CO and FT protein structures were similar in B. rapa and Arabidopsis but different in rice; and (v) expression analysis of photoperiod pathway-related genes in B. rapa under different photoperiod treatments by RT-qPCR. This analysis will provide resources for understanding the flowering mechanisms and evolutionary pattern of COL genes. In addition, this genome-wide comparative study of COL genes may also provide clues for evolution of other flowering genes.

  17. Self/non-self recognition mechanisms in sexual reproduction: new insight into the self-incompatibility system shared by flowering plants and hermaphroditic animals.

    Science.gov (United States)

    Sawada, Hitoshi; Morita, Masaya; Iwano, Megumi

    2014-08-01

    Sexual reproduction is an essential process for generating a genetic variety in the next generation. However, most flowering plants and hermaphroditic animals potentially allow self-fertilization. Approximately 60% of angiosperms possess a self-incompatibility (SI) system to avoid inbreeding. The SI system functions at a process of interaction between pollen (or pollen tube) and the pistil. These SI-responsible factors (S-determinants) in pollen and the pistil are encoded by highly polymorphic multiallelic genes in the S-locus, which are tightly linked making a single haplotype. Different taxonomic families utilize different types of S-determinant proteins. In contrast to the plant system, the mechanisms of SI in simultaneously hermaphroditic animals are largely unknown. Among them, promising candidates for SI in ascidians (primitive chordates) were recently identified. The SI system in the ascidian Cionaintestinalis was found to be very similar to those in flowering plants: The products of sperm- and egg-side multiallelic SI genes, which are tight linked and highly polymorphic, appear to be responsible for the SI system as revealed by genetic analysis. These findings led us to speculate that the SI systems in plants and animals evolved in a manner of convergent evolution. Here, we review the current understanding of the molecular mechanisms of the SI system in flowering plants, particularly Brassicacea, and in ascidians from the viewpoint of common mechanisms shared by plants and animals.

  18. Establishment of an Indirect Genetic Transformation Method for Arabidopsis thaliana ecotype Bangladesh

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    Bulbul AHMED

    2011-11-01

    Full Text Available Arabidopsis thaliana is a small flowering plant belonging to the Brassicaceae family, which is adopted as a model plant for genetic research. Agrobacterium tumifaciensmediated transformation method for A. thaliana ecotype Bangladesh was established. Leaf discs of A. thaliana were incubated with A. tumefaciens strain LBA4404 containing chimeric nos. nptII. nos and intron-GUS genes. Following inoculation and co-cultivation, leaf discs were cultured on selection medium containing 50 mg/l kanamycin + 50 mg/l cefotaxime + 1.5 mg/l NAA and kanamycin resistant shoots were induced from the leaf discs after two weeks. Shoot regeneration was achieved after transferring the tissues onto fresh medium of the same combination. Finally, the shoots were rooted on MS medium containing 50 mg/l kanamycin. Incorporation and expression of the transgenes were confirmed by PCR analysis. Using this protocol, transgenic A. thaliana plants can be obtained and indicates that genomic transformation in higher plants is possible through insertion of desired gene. Although Agrobacterium mediated genetic transformation is established for A. thaliana, this study was the conducted to transform A. thaliana ecotype Bangladesh.

  19. Effect of extracts of plants with insecticidal activity on the control of Microtheca ochroloma Stal (Col: Chrysomelidae in the laboratory

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    Cíntia Grendene Lima

    2008-03-01

    Full Text Available Extracts of plants with insecticidal activity were tested on the control of Microtheca ochroloma (Col.: Chrysomelidae, an important insect-pest of Brassicaceae, in the larval and adult phases. Two 3-day-old larvae, kept under laboratory conditions (25ºC temperature, 70% relative humidity and 14 hours of photophase, were placed in a glass tube with a leaf of Chinese cabbage (Brassica chinensis previously treated with aqueous extracts (10% p/v of chinaberry leaf (Melia azedarach, chinaberry branch, and tobacco powder (Nicotiana tabacum. The same procedure was repeated in two assays with adult insects. In the first assay, all the previously-mentioned extracts were used, in addition to DalNeem (commercial product of Azadirachta indica. In the second, the insects were exposed to extracts of tabasco pepper fruits (Capsicum frutescens, Surinam cherry (Eugenia unifl ora, jambolan (Syzygium cuminii and eucalyptus leaves (Eucalyptus sp.. All the tests consisted of 10 insects per treatment, with five repetitions in the first test using adult insects and six repetitions in the others. Observations were made daily up to the fifth day, aiming to evaluate the mortality of the insects. All the tested extracts resulted in an effective control of the larvae of M. ochroloma. In relation to the adult insects, only the extracts of tobacco powder and DalNeem showed effective control.

  20. The mosaic of ancestral karyotype blocks in the Sinapis alba L. genome.

    Science.gov (United States)

    Nelson, Matthew N; Parkin, Isobel A P; Lydiate, Derek J

    2011-01-01

    The organisation of the Sinapis alba genome, comprising 12 linkage groups (n = 12), was compared with the Brassicaceae ancestral karyotype (AK) genomic blocks previously described in other crucifer species. Most of the S. alba genome falls into conserved triplicated genomic blocks that closely match the AK-defined genomic blocks found in other crucifer species including the A, B, and C genomes of closely related Brassica species. In one instance, an S. alba linkage group (S05) was completely collinear with one AK chromosome (AK1), the first time this has been observed in a member of the Brassiceae tribe. However, as observed for other members of the Brassiceae tribe, ancestral genomic blocks were fragmented in the S. alba genome, supporting previously reported comparative chromosome painting describing rearrangements of the AK karyotype prior to the divergence of the Brassiceae from other crucifers. The presented data also refute previous phylogenetic reports that suggest S. alba was more closely related to Brassica nigra (B genome) than to B. rapa (A genome) and B. oleracea (C genome). A comparison of the S. alba and Arabidopsis thaliana genomes revealed many regions of conserved gene order, which will facilitate access to the rich genomic resources available in the model species A. thaliana for genetic research in the less well-resourced crop species S. alba.

  1. Cruciferous plants: phytochemical toxicity versus cancer chemoprotection.

    Science.gov (United States)

    Assayed, Mohamed E; Abd El-Aty, A M

    2009-11-01

    The Cruciferae (also known as the Brassicaceae) are the family of plants that include the various familiar members of the species Brassica oleracea (e.g., broccoli, cabbage, cauliflower, kale, Brussels sprouts) as well as many other plants that are widely consumed in various parts of the world. Forage and root brassicas are widely used as winter feeds for cattle and sheep. A striking and characteristic chemical property of cruciferous plants is their high content of glucosinolates (more than 120 types), which often approaches 1% or more of their dry weight. The interest devoted to this group of natural products is caused by the appreciable biological effects of both the intact glucosinolates (GSLs) and especially the complex group of glucosinolate transformation products produced in non-enzymatic and enzymatic reactions. Depending on the concentration and structural types of these compounds, their biological effects can be toxic, anti-nutritional or beneficial to health. Most serious economic problems in livestock seem to result from rapeseed meal; arising from GSLs or their breakdown products. In contrast, GSLs and their isothiocyanate (ITC) hydrolysis products are reportedly well-known protectors against carcinogenesis. GSLs play further protective and evolutionarily important roles in plants. These include allelopathy (suppression of growth of neighboring plants), specific positive and negative feeding cues for some insects and broad antibiotic properties including nematocidal, antimicrobial, antifungal, antiprotozoal and insecticidal activities. The controversy in the referred actions contributed to crucifers' phytochemicals has been exclusively discussed.

  2. Diplotaxis simplex suppresses postprandial hyperglycemia in mice by inhibiting key-enzymes linked to type 2 diabetes

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    Hamida Jdir

    2015-04-01

    Full Text Available Abstract Nutritional properties of Diplotaxis simplex Spreng., Brassicaceae, an edible wild cruciferous largely distributed in North Africa, were investigated. Potassium (3690–3780 mg/100 g and calcium (900–1170 mg/100 g were the most concentrated minerals. Linoleinic acid was found to be the main fatty acid (25.4–27.7%, followed by palmitic acid (13.2–15.3%. Moreover, lipidic fraction of leaves was characterized by a relatively high rate of ethyl linoleate (14.4% and phytol (17.6%. Ethyl acetate extract of D. simplex flowers showed concentration-dependent α-amylase (IC50 3.46 mg/ml and α-glucosidase (IC50 0.046 mg/ml inhibitory activities. The positive in vitro enzymes inhibition was confirmed by a maltose tolerance test, which showed that treatment with flowers extract significantly inhibited the rise in blood glucose levels of maltose-loaded mice comparable to the standard antihyperglycemic agent acarbose. From these results, it may be concluded that D. simplex flowers can be used effectively as a safer alternative therapy to control postprandial hyperglycemia.

  3. De novo assembly of the pennycress (Thlaspi arvense) transcriptome provides tools for the development of a winter cover crop and biodiesel feedstock.

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    Dorn, Kevin M; Fankhauser, Johnathon D; Wyse, Donald L; Marks, M David

    2013-09-01

    Field pennycress (Thlaspi arvense L.) has potential as an oilseed crop that may be grown during fall (autumn) and winter months in the Midwestern United States and harvested in the early spring as a biodiesel feedstock. There has been little agronomic improvement in pennycress through traditional breeding. Recent advances in genomic technologies allow for the development of genomic tools to enable rapid improvements to be made through genomic assisted breeding. Here we report an annotated transcriptome assembly for pennycress. RNA was isolated from representative plant tissues, and 203 million unique Illumina RNA-seq reads were produced and used in the transcriptome assembly. The draft transcriptome assembly consists of 33 873 contigs with a mean length of 1242 bp. A global comparison of homology between the pennycress and Arabidopsis transcriptomes, along with four other Brassicaceae species, revealed a high level of global sequence conservation within the family. The final assembly was functionally annotated, allowing for the identification of putative genes controlling important agronomic traits such as flowering and glucosinolate metabolism. Identification of these genes leads to testable hypotheses concerning their conserved function and to rational strategies to improve agronomic properties in pennycress. Future work to characterize isoform variation between diverse pennycress lines and develop a draft genome sequence for pennycress will further direct trait improvement.

  4. New approaches to facilitate rapid domestication of a wild plant to an oilseed crop: example pennycress (Thlaspi arvense L.).

    Science.gov (United States)

    Sedbrook, John C; Phippen, Winthrop B; Marks, M David

    2014-10-01

    Oilseed crops are sources of oils and seed meal having a multitude of uses. While the domestication of soybean and rapeseed took extended periods of time, new genome-based techniques have ushered in an era where crop domestication can occur rapidly. One attractive target for rapid domestication is the winter annual plant Field Pennycress (Thlaspi arvense L.; pennycress; Brassicaceae). Pennycress grows widespread throughout temperate regions of the world and could serve as a winter oilseed-producing cover crop. If grown throughout the USA Midwest Corn Belt, for example, pennycress could produce as much as 840L/ha oils and 1470kg/ha press-cake annually on 16 million hectares of farmland currently left fallow during the fall through spring months. However, wild pennycress strains have inconsistent germination and stand establishment, un-optimized maturity for a given growth zone, suboptimal oils and meal quality for biofuels and food production, and significant harvest loss due to pod shatter. In this review, we describe the virtues and current shortcomings of pennycress and discuss how knowledge from studying Arabidopsis thaliana and other Brassicas, in combination with the advent of affordable next generation sequencing, can bring about the rapid domestication and improvement of pennycress and other crops.

  5. Identification of multiple lipid genes with modifications in expression and sequence associated with the evolution of hydroxy fatty acid accumulation in Physaria fendleri.

    Science.gov (United States)

    Horn, Patrick J; Liu, Jinjie; Cocuron, Jean-Christophe; McGlew, Kathleen; Thrower, Nicholas A; Larson, Matt; Lu, Chaofu; Alonso, Ana P; Ohlrogge, John

    2016-05-01

    Two Brassicaceae species, Physaria fendleri and Camelina sativa, are genetically very closely related to each other and to Arabidopsis thaliana. Physaria fendleri seeds contain over 50% hydroxy fatty acids (HFAs), while Camelina sativa and Arabidopsis do not accumulate HFAs. To better understand how plants evolved new biochemical pathways with the capacity to accumulate high levels of unusual fatty acids, transcript expression and protein sequences of developing seeds of Physaria fendleri, wild-type Camelina sativa, and Camelina sativa expressing a castor bean (Ricinus communis) hydroxylase were analyzed. A number of potential evolutionary adaptations within lipid metabolism that probably enhance HFA production and accumulation in Physaria fendleri, and, in their absence, limit accumulation in transgenic tissues were revealed. These adaptations occurred in at least 20 genes within several lipid pathways from the onset of fatty acid synthesis and its regulation to the assembly of triacylglycerols. Lipid genes of Physaria fendleri appear to have co-evolved through modulation of transcriptional abundances and alterations within protein sequences. Only a handful of genes showed evidence for sequence adaptation through gene duplication. Collectively, these evolutionary changes probably occurred to minimize deleterious effects of high HFA amounts and/or to enhance accumulation for physiological advantage. These results shed light on the evolution of pathways for novel fatty acid production in seeds, help explain some of the current limitations to accumulation of HFAs in transgenic plants, and may provide improved strategies for future engineering of their production.

  6. Integrating Insect Life History and Food Plant Phenology: Flexible Maternal Choice Is Adaptive.

    Science.gov (United States)

    Fei, Minghui; Harvey, Jeffrey A; Weldegergis, Berhane T; Huang, Tzeyi; Reijngoudt, Kimmy; Vet, Louise M; Gols, Rieta

    2016-08-03

    Experience of insect herbivores and their natural enemies in the natal habitat is considered to affect their likelihood of accepting a similar habitat or plant/host during dispersal. Growing phenology of food plants and the number of generations in the insects further determines lability of insect behavioural responses at eclosion. We studied the effect of rearing history on oviposition preference in a multivoltine herbivore (Pieris brassicae), and foraging behaviour in the endoparasitoid wasp (Cotesia glomerata) a specialist enemy of P. brassicae. Different generations of the insects are obligatorily associated with different plants in the Brassicaceae, e.g., Brassica rapa, Brassica nigra and Sinapis arvensis, exhibiting different seasonal phenologies in The Netherlands. Food plant preference of adults was examined when the insects had been reared on each of the three plant species for one generation. Rearing history only marginally affected oviposition preference of P. brassicae butterflies, but they never preferred the plant on which they had been reared. C. glomerata had a clear preference for host-infested B. rapa plants, irrespective of rearing history. Higher levels of the glucosinolate breakdown product 3-butenyl isothiocyanate in the headspace of B. rapa plants could explain enhanced attractiveness. Our results reveal the potential importance of flexible plant choice for female multivoltine insects in nature.

  7. Evolutionary history of double-stranded RNA binding proteins in plants: identification of new cofactors involved in easiRNA biogenesis.

    Science.gov (United States)

    Clavel, Marion; Pélissier, Thierry; Montavon, Thomas; Tschopp, Marie-Aude; Pouch-Pélissier, Marie-Noëlle; Descombin, Julie; Jean, Viviane; Dunoyer, Patrice; Bousquet-Antonelli, Cécile; Deragon, Jean-Marc

    2016-05-01

    In this work, we retrace the evolutionary history of plant double-stranded RNA binding proteins (DRBs), a group of non-catalytic factors containing one or more double-stranded RNA binding motif (dsRBM) that play important roles in small RNA biogenesis and functions. Using a phylogenetic approach, we show that multiple dsRBM DRBs are systematically composed of two different types of dsRBMs evolving under different constraints and likely fulfilling complementary functions. In vascular plants, four distinct clades of multiple dsRBM DRBs are always present with the exception of Brassicaceae species, that do not possess member of the newly identified clade we named DRB6. We also identified a second new and highly conserved DRB family (we named DRB7) whose members possess a single dsRBM that shows concerted evolution with the most C-terminal dsRBM domain of the Dicer-like 4 (DCL4) proteins. Using a BiFC approach, we observed that Arabidopsis thaliana DRB7.2 (AtDRB7.2) can directly interact with AtDRB4 but not with AtDCL4 and we provide evidence that both AtDRB7.2 and AtDRB4 participate in the epigenetically activated siRNAs pathway.

  8. Bioaccumulation of thallium in an agricultural soil as affected by solid-phase association

    Science.gov (United States)

    Vaněk, Aleš; Grösslová, Zuzana; Mihaljevič, Martin

    2016-04-01

    The work focused on the biogeochemical behavior of synthetic Tl modified phases, namely birnessite, ferrihydrite, and calcite, in a neutral soil Leptosol. The data presented here clearly demonstrate a strong relationship between the mineralogical position of Tl in the soil and its uptake by the studied plant (Sinapis alba L.). All tested Tl phases behaved as potential Tl sources in the rhizosphere, with a maximum for ferrihydrite and minimum for birnessite. Therefore, it can be concluded that Mn(III,IV) oxides, if present in the soil system, may reduce biological uptake of Tl to a substantial degree, including the case of Tl-accumulating species (i.e., Brassicaceae). It was proven that even Tl-enriched calcite present in the carbonate-rich soil is an important precursor for further contaminant mobilization, despite its relative resistance to degradation. Our data indicate that the fate of secondary Tl phases in the rhizosphere might be significantly influenced by the pH of the soil matrix, i.e., soils with lower pHs reduce their stability, making them more susceptible to further degradation by root exudates. Bulk soil mineralogy and the content and quality of SOM are thus suggested to be critical parameters controlling the bioaccumulation potential for Tl. This research was supported by the Czech Science Foundation (grant no. 14-01866S).

  9. Py-GC/MS, GC/MS and FTIR investigations on Late Roman-Egyptian adhesives from opus sectile: new insights into ancient recipes and technologies.

    Science.gov (United States)

    Ribechini, Erika; Orsini, Sibilla; Silvano, Flora; Colombini, Maria Perla

    2009-04-06

    An analytical protocol based on optical microscopy, Fourier transforms infrared spectroscopy (FTIR), analytical pyrolysis in the presence of hexamethyldisilazane followed by gas chromatographic/mass spectrometric analysis (Py-GC/MS) and gas chromatography/mass spectrometry after alkaline hydrolysis, solvent extraction and trimethylsilylation (GC/MS) was used in the chemical characterisation of the original adhesives used to fix monochrome and mosaic glass and stone plaques coming from the Late Roman archaeological site of Antinoopolis (Egypt). FTIR analysis demonstrated the presence of calcite fragments, and Py-GC/MS and GC/MS analyses provided detailed molecular compositions, highlighting the presence of a wide range of compound classes including diterpenoid acids, tricyclic abietanes with a high degree of aromatisation, mid- and long-chain monocarboxylic fatty acids, mono- and di-hydroxy acids, alpha,omega-dicaboxylic fatty acids, n-alkanols, and n-alkanes. Characteristic biomarkers and their distribution patterns indicated the presence of pine pitch in all the adhesives, which in some cases was admixed with beeswax and brassicaceae seed oil. The results provided new insights into the complex recipes used by artisans in ancient Egypt in the production of adhesives and in the sophisticated manufacture of opus sectile decorations.

  10. Metabolic Activity of Radish Sprouts Derived Isothiocyanates in Drosophila melanogaster.

    Science.gov (United States)

    Baenas, Nieves; Piegholdt, Stefanie; Schloesser, Anke; Moreno, Diego A; García-Viguera, Cristina; Rimbach, Gerald; Wagner, Anika E

    2016-02-18

    We used Drosophila melanogaster as a model system to study the absorption, metabolism and potential health benefits of plant bioactives derived from radish sprouts (Raphanus sativus cv. Rambo), a Brassicaceae species rich in glucosinolates and other phytochemicals. Flies were subjected to a diet supplemented with lyophilized radish sprouts (10.6 g/L) for 10 days, containing high amounts of glucoraphenin and glucoraphasatin, which can be hydrolyzed by myrosinase to the isothiocyanates sulforaphene and raphasatin, respectively. We demonstrate that Drosophila melanogaster takes up and metabolizes isothiocyanates from radish sprouts through the detection of the metabolite sulforaphane-cysteine in fly homogenates. Moreover, we report a decrease in the glucose content of flies, an upregulation of spargel expression, the Drosophila homolog of the mammalian PPARγ-coactivator 1 α, as well as the inhibition of α-amylase and α-glucosidase in vitro. Overall, we show that the consumption of radish sprouts affects energy metabolism in Drosophila melanogaster which is reflected by lower glucose levels and an increased expression of spargel, a central player in mitochondrial biogenesis. These processes are often affected in chronic diseases associated with aging, including type II diabetes mellitus.

  11. Occurrence of symbiotic fungi and rhizospheric phosphate solubilization in weeds - doi: 10.4025/actasciagron.v35i1.15047

    Directory of Open Access Journals (Sweden)

    Edson Aparecido dos Santos

    2012-08-01

    Full Text Available Studies on the ecology of the organisms involved in the production process are necessary for the development of sustainable agriculture, and sustainability is currently closely linked to the profitability of production. The objective of this study was to verify the occurrence of arbuscular mycorrhizal fungi in weeds infesting Brazilian crops and to evaluate the inorganic phosphate solubilization potential of the associated microbiota. A total of 36 weed species were evaluated for the occurrence of mycorrhizae; of these, 11 were selected to evaluate their potential for total and relative phosphate solubilization. All of the species demonstrated mycorrhizal colonization, including a member of the Brassicaceae family, which is usually assumed to be non-mycorrhizal. In most of the species, morphological types of arbuscular and coiled hyphae were observed, with the coiled hyphae being the most common in the grasses. Dark septate endophytic fungi were observed in most of the plants. The weeds presented different potentials for P solubilization in the rhizosphere; Amaranthus retroflexus, Bidens pilosa and Leonotis nepetaefolia showed high values of relative phosphate solubilization. This is the first report on the mycorrhizae and phosphate solubilization activity in weeds in Brazil.

  12. The effect of leaf biopesticide (Mirabilis jalapa) and entomopathogenic fungi (Beauveria bassiana) combinations to some physiological characters and histology of Crocidolomia pavonana (Lepidoptera: Pyralidae) larvae

    Science.gov (United States)

    Sirajuddin, Nur Tasmiah; Anggraeni, Tjandra

    2014-03-01

    Crocidolomia pavonana is one of the most prominent pest that cause damage to vegetables especially Brassicaceae such us cabbage, broccoli, mustard greens and turnips, these vegetable have been widely consumed and cultivated in Indonesia. The invation of this pest might created high risk of cultivated failure. Enviromentally pest control efforts by utilizing biological control agents such us biopesticides of plants and entomopathogenic fungi have been carried out, but the work was relatively long and strongly influenced by environmental factors. The purpose of this study was to combine biopesticide of Mirabilis jalapa and entomopathogenic fungi Beauveria bassiana to look at mortality of C. pavonana larvae observing by histological incision and scanning electron microscope. Concentration treatments of extracts M. jalapa was (control; 0,1; 0,2; 0,4 and 0,8 gr/ml) and the result showed that the effective concentration was 0,8 g/ml which affect significantly (P<0,05) in reduce pupa weight, improve pupasi time, lowering percentage of emergence imago and improve the long phase of pupa which differ significantly with control. The combination of biopesticides proved to accelerate the mortality of larvae. Histological incision observed at hour 24, 48, 72 and 96, where the biggest damage occurred at hour 96. Observation by scanning electron microscope showed fungus spores that attach to the body surface of larvae subsequently penetrate into the body. Thus the combination use of biopesticides M. jalapa and fungi B. bassiana, can be used as an alternative pest control C. pavonana.

  13. The effect of leaf biopesticide (Mirabilis jalapa) and entomopathogenic fungi (Beauveria bassiana) combinations to some physiological characters and histology of Crocidolomia pavonana (Lepidoptera: Pyralidae) larvae

    Energy Technology Data Exchange (ETDEWEB)

    Sirajuddin, Nur Tasmiah, E-mail: nurtasmiah@yahoo.com; Anggraeni, Tjandra, E-mail: nurtasmiah@yahoo.com [Sekolah Ilmu dan Teknologi Hayati - ITB, Jalan Ganesa 10 Bandung (Indonesia)

    2014-03-24

    Crocidolomia pavonana is one of the most prominent pest that cause damage to vegetables especially Brassicaceae such us cabbage, broccoli, mustard greens and turnips, these vegetable have been widely consumed and cultivated in Indonesia. The invation of this pest might created high risk of cultivated failure. Enviromentally pest control efforts by utilizing biological control agents such us biopesticides of plants and entomopathogenic fungi have been carried out, but the work was relatively long and strongly influenced by environmental factors. The purpose of this study was to combine biopesticide of Mirabilis jalapa and entomopathogenic fungi Beauveria bassiana to look at mortality of C. pavonana larvae observing by histological incision and scanning electron microscope. Concentration treatments of extracts M. jalapa was (control; 0,1; 0,2; 0,4 and 0,8 gr/ml) and the result showed that the effective concentration was 0,8 g/ml which affect significantly (P<0,05) in reduce pupa weight, improve pupasi time, lowering percentage of emergence imago and improve the long phase of pupa which differ significantly with control. The combination of biopesticides proved to accelerate the mortality of larvae. Histological incision observed at hour 24, 48, 72 and 96, where the biggest damage occurred at hour 96. Observation by scanning electron microscope showed fungus spores that attach to the body surface of larvae subsequently penetrate into the body. Thus the combination use of biopesticides M. jalapa and fungi B. bassiana, can be used as an alternative pest control C. pavonana.

  14. Differential responses to salt-induced oxidative stress in three phylogenetically related plant species: Arabidopsis thaliana (glycophyte, Thellungiella salsuginea and Cakile maritima (halophytes. Involvement of ROS and NO in the control of K+/Na+ homeostasis

    Directory of Open Access Journals (Sweden)

    Francisco J Corpas

    2016-08-01

    Full Text Available Salinity, which is usually associated with a nitro-oxidative stress component, is one of the major environmental factors limiting plant growth and development. Plants have thus developed specific ways of dealing with this problem. The compartmentalization of sodium (Na+ ions in vacuoles and the capacity to sharply discriminate between potassium (K+ and Na+ in order to maintain high K+/Na+ ratios are two of the most effective strategies to overcome salt stress. Plants require large amounts of K+ to maximize growth and yields. This macronutrient is involved in physiological processes such as growth, photosynthesis, osmoregulation, enzyme activation, stomatal movement, water and nutrient transport via the xylem and protein synthesis. Resistance to salt stress is mainly related to the capacity of plants to maintain improved K+ uptake despite competition from Na+. The Brassicaceae family includes species such as Arabidopsis thaliana (plant model for glycophytes, Thellungiella salsuginea and Cakile maritima (plant models for halophytes, which exhibit significant variations in response to salt stress. In this review, we provide a comprehensive update with respect to differential responses to salt stress in these three plant species, with particular emphasis on the potential involvement of reactive oxygen species (ROS and nitric oxide (NO in maintaining K+/Na+ homeostasis and their contribution to salt tolerance.

  15. Dedicated Industrial Oilseed Crops as Metabolic Engineering Platforms for Sustainable Industrial Feedstock Production

    Science.gov (United States)

    Zhu, Li-Hua; Krens, Frans; Smith, Mark A.; Li, Xueyuan; Qi, Weicong; van Loo, Eibertus N.; Iven, Tim; Feussner, Ivo; Nazarenus, Tara J.; Huai, Dongxin; Taylor, David C.; Zhou, Xue-Rong; Green, Allan G.; Shockey, Jay; Klasson, K. Thomas; Mullen, Robert T.; Huang, Bangquan; Dyer, John M.; Cahoon, Edgar B.

    2016-01-01

    Feedstocks for industrial applications ranging from polymers to lubricants are largely derived from petroleum, a non-renewable resource. Vegetable oils with fatty acid structures and storage forms tailored for specific industrial uses offer renewable and potentially sustainable sources of petrochemical-type functionalities. A wide array of industrial vegetable oils can be generated through biotechnology, but will likely require non-commodity oilseed platforms dedicated to specialty oil production for commercial acceptance. Here we show the feasibility of three Brassicaceae oilseeds crambe, camelina, and carinata, none of which are widely cultivated for food use, as hosts for complex metabolic engineering of wax esters for lubricant applications. Lines producing wax esters >20% of total seed oil were generated for each crop and further improved for high temperature oxidative stability by down-regulation of fatty acid polyunsaturation. Field cultivation of optimized wax ester-producing crambe demonstrated commercial utility of these engineered crops and a path for sustainable production of other industrial oils in dedicated specialty oilseeds. PMID:26916792

  16. Macroevolutionary patterns of glucosinolate defense and tests of defense-escalation and resource availability hypotheses.

    Science.gov (United States)

    Cacho, N Ivalú; Kliebenstein, Daniel J; Strauss, Sharon Y

    2015-11-01

    We explored macroevolutionary patterns of plant chemical defense in Streptanthus (Brassicaceae), tested for evolutionary escalation of defense, as predicted by Ehrlich and Raven's plant-herbivore coevolutionary arms-race hypothesis, and tested whether species inhabiting low-resource or harsh environments invest more in defense, as predicted by the resource availability hypothesis (RAH). We conducted phylogenetically explicit analyses using glucosinolate profiles, soil nutrient analyses, and microhabitat bareness estimates across 30 species of Streptanthus inhabiting varied environments and soils. We found weak to moderate phylogenetic signal in glucosinolate classes and no signal in total glucosinolate production; a trend toward evolutionary de-escalation in the numbers and diversity of glucosinolates, accompanied by an evolutionary increase in the proportion of aliphatic glucosinolates; some support for the RAH relative to soil macronutrients, but not relative to serpentine soil use; and that the number of glucosinolates increases with microhabitat bareness, which is associated with increased herbivory and drought. Weak phylogenetic signal in chemical defense has been observed in other plant systems. A more holistic approach incorporating other forms of defense might be necessary to confidently reject escalation of defense. That defense increases with microhabitat bareness supports the hypothesis that habitat bareness is an underappreciated selective force on plants in harsh environments.

  17. Botanical Characteristics of Polish Honeys from Natura 2000 Habitats

    Directory of Open Access Journals (Sweden)

    Wróblewska Anna

    2015-06-01

    Full Text Available Eighteen samples of honeys which were harvested over several beekeeping seasons from apiaries located in the area of the “Kózki” Nature Reserve (central-eastern Poland were the subject of the present study. The “Kózki” Nature Reserve is included in the European Ecological Network Natura 2000 program. A microscopic analysis of the pollen sediment in the honeys showed the presence of 61 pollen types from 32 botanical families in the investigated material. There were represented by nectariferous (72.1% and nonnectariferous plants (27.9% and both entomophilous and anemophilous ones. The total number of pollen taxa in individual samples ranged from 13 to 37. The main sources of nectar from trees and shrubs were: Frangula alnus, Prunus, Robinia pseudacacia, Rubus, Salix, Tilia. The main sources of nectar from herbaceous plants were: Anthriscus, Brassicaceae, Caryophyllaceae, Centaurea cyanus, Taraxacum, and Trifolium repens. Four unifloral honeys (three fruit tree honeys and one lime honey and fourteen multifloral honeys, with a significant percentage of pollen from several nectariferous plant taxa, were distinguished in the studied material.

  18. Juicy Stories on Female Reproductive Tissue Development:Coordinating the Hormone Flows

    Institute of Scientific and Technical Information of China (English)

    Vernica A Grieneisen; Athanasius FM Mare; Lars stergaard

    2013-01-01

    In the past 20-30 years, developmental biologists have made tremendous progress in identifying genes required for the specifica-tion of individual cell types of an organ and in describing how they interact in genetic networks. In comparison, very little is known about the mechanisms that regulate tissue polarity and overall organ patterning. Gynoecia and fruits from members of the Brassicaceae family of flowering plants provide excellent model systems to study organ patterning and tissue specification because they become partitioned into distinct domains whose formation is determined by polarity establishment both at a cellular and whole tissue level. Interactions among key regulators of Arabidopsis gynoecium and fruit development have revealed a network of upstream transcription factor activities required for such tissue differentiation. Regulation of the plant hormone auxin is emerging as both an immediate downstream output and input of these activities, and here we aim to provide an overview of the current knowledge regarding the link between auxin and female reproductive development in plants. In this review, we will also demonstrate how available data can be exploited in a mathematical modeling approach to reveal and understand the feedback regulatory circuits that underpin the polarity establishment, necessary to guide auxin flows.

  19. Composición florística de la cuenca del río Ilo-Moquegua y Lomas de Ilo, Moquegua, Perú

    Directory of Open Access Journals (Sweden)

    Mónica Arakaki

    2013-06-01

    Full Text Available Se presenta un estudio de la composición y riqueza de la flora vascular en la cuenca del Río Ilo- Moquegua y las Lomas de Ilo, a lo largo de una gradiente altitudinal que va desde los 0 hasta 4600 m, basado en colectas intensivas, revisión de ejemplares de herbario y consulta bibliográfica. De acuerdo al presente estudio, la flora vascular de la cuenca del río Ilo-Moquegua y las Lomas de Ilo está integrada por 63 familias, 233 géneros y 394 especies. Las Magnoliopsida representan el 83% de las especies y las Liliopsida el 15%. Las familias con mayor número de géneros y especies son Asteraceae (41 géneros y 60 especies, Poaceae (28 y 44, Solanaceae (11 y 32, Fabaceae (17 y 26, Malvaceae (11 y 21, Brassicaceae (10 y 15, Boraginaceae (9 y 15 y Cactaceae (10 y 14. Las formas biológicas dominantes son las hierbas (72%, seguidas por los arbustos (21%, plantas que pueden ser hierbas o arbustos (5%, árboles (2% y plantas parásitas (menos del 1%. De las 55 especies endémicas del Perú reportadas en el presente estudio, 10 están restringidas al departamento de Moquegua. Se presenta un total de 176 nuevas adiciones a la flora del departamento.

  20. Positive darwinian selection at the imprinted MEDEA locus in plants.

    Science.gov (United States)

    Spillane, Charles; Schmid, Karl J; Laoueillé-Duprat, Sylvia; Pien, Stéphane; Escobar-Restrepo, Juan-Miguel; Baroux, Célia; Gagliardini, Valeria; Page, Damian R; Wolfe, Kenneth H; Grossniklaus, Ueli

    2007-07-19

    In mammals and seed plants, a subset of genes is regulated by genomic imprinting where an allele's activity depends on its parental origin. The parental conflict theory suggests that genomic imprinting evolved after the emergence of an embryo-nourishing tissue (placenta and endosperm), resulting in an intragenomic parental conflict over the allocation of nutrients from mother to offspring. It was predicted that imprinted genes, which arose through antagonistic co-evolution driven by a parental conflict, should be subject to positive darwinian selection. Here we show that the imprinted plant gene MEDEA (MEA), which is essential for seed development, originated during a whole-genome duplication 35 to 85 million years ago. After duplication, MEA underwent positive darwinian selection consistent with neo-functionalization and the parental conflict theory. MEA continues to evolve rapidly in the out-crossing species Arabidopsis lyrata but not in the self-fertilizing species Arabidopsis thaliana, where parental conflicts are reduced. The paralogue of MEA, SWINGER (SWN; also called EZA1), is not imprinted and evolved under strong purifying selection because it probably retained the ancestral function of the common precursor gene. The evolution of MEA suggests a late origin of genomic imprinting within the Brassicaceae, whereas imprinting is thought to have originated early within the mammalian lineage.

  1. Identification of complex, naturally occurring flavonoid glycosides in kale (Brassica oleracea var. sabellica) by high-performance liquid chromatography diode-array detection/electrospray ionization multi-stage mass spectrometry.

    Science.gov (United States)

    Schmidt, Susanne; Zietz, Michaela; Schreiner, Monika; Rohn, Sascha; Kroh, Lothar W; Krumbein, Angelika

    2010-07-30

    Kale is a member of the Brassicaceae family and has a complex profile of flavonoid glycosides. Therefore, kale is a suitable matrix to discuss in a comprehensive study the different fragmentation patterns of flavonoid glycosides. The wide variety of glycosylation and acylation patterns determines the health-promoting effects of these glycosides. The aim of this study is to investigate the naturally occurring flavonoids in kale. A total of 71 flavonoid glycosides of quercetin, kaempferol and isorhamnetin were identified using a high-performance liquid chromatography diode-array detection/electrospray ionization multi-stage mass spectrometry (HPLC-DAD/ESI-MS(n)) method. Of these 71 flavonol glycosides, 27 were non-acylated, 30 were monoacylated and 14 were diacylated. Non-acylated flavonol glycosides were present as mono-, di-, tri- and tetraglycosides. This is the first time that the occurrence of four different fragmentation patterns of non-acylated flavonol triglycosides has been reported in one matrix simultaneously. In addition, 44 flavonol glycosides were acylated with p-coumaric, caffeic, ferulic, hydroxyferulic or sinapic acid. While monoacylated glycosides existed as di-, tri- and tetraglycosides, diacylated glycosides occurred as tetra- and pentaglycosides. To the best of our knowledge, 28 compounds in kale are reported here for the first time. These include three acylated isorhamnetin glycosides (isorhamnetin-3-O-sinapoyl-sophoroside-7-O-D-glucoside, isorhamnetin-3-O-feruloyl-sophoroside-7-O-diglucoside and isorhamnetin-3-O-disinapoyl-triglucoside-7-O-diglucoside) and seven non-acylated isorhamnetin glycosides.

  2. Effects of kale ingestion on pharmacokinetics of acetaminophen in rats.

    Science.gov (United States)

    Yamasaki, Izumi; Uotsu, Nobuo; Yamaguchi, Kohji; Takayanagi, Risa; Yamada, Yasuhiko

    2011-12-01

    Kale is a cruciferous vegetable (Brassicaceae) that contains a large amount of health-promoting phytochemicals. The chronic ingestion of cabbage of the same family is known to accelerate conjugating acetaminophen (AA) and decrease the plasma AA level. Therefore, we examined to clarify the effects of kale on the pharmacokinetics of AA, its glucuronide (AA-G) and sulfate (AA-S). AA was orally administered to rats pre-treated with kale or cabbage (2000 mg/kg/day) for one week. Blood samples were collected from the jugular vein, and the concentrations of AA, AA-G and AA-S were determined. In results, kale ingestion induced an increase in the area under the concentration-time curve (AUC) and a decrease in the clearance of AA, whereas cabbage had almost no influence. In addition, there were significant differences in the AUC of AA-G between the control and kale groups. mRNA expression levels of UDP-glucuronosyltransferases, the enzymes involved in glucuronidation, in the kale group were significantly higher than those in the control group. In conclusion, kale ingestion increased the plasma concentrations of both AA and AA-G. The results suggest that kale ingestion accelerates the glucuronidation of AA, but an increase of plasma AA levels has a different cause than the cause of glucuronidation.

  3. A novel and exploitable antifungal peptide from kale (Brassica alboglabra) seeds.

    Science.gov (United States)

    Lin, Peng; Ng, Tzi Bun

    2008-10-01

    The aim of this study was to purify and characterize antifungal peptides from kale seeds in view of the paucity of information on antifungal peptides from the family Brassicaceae, and to compare its characteristics with those of published Brassica antifungal peptides. A 5907-Da antifungal peptide was isolated from kale seeds. The isolation procedure comprised affinity chromatography on Affi-gel blue gel, ion exchange chromatography on SP-Sepharose and Mono S, and gel filtration on Superdex Peptide. The peptide was adsorbed on the first three chromatographic media. It inhibited mycelial growth in a number of fungal species including Fusarium oxysporum, Helminthosporium maydis, Mycosphaerella arachidicola and Valsa mali, with an IC(50) of 4.3microM, 2.1microM, 2.4microM, and 0.15microM, respectively and exhibited pronounced thermostability and pH stability. It inhibited proliferation of hepatoma (HepG2) and breast cancer (MCF7) cells with an IC(50) of 2.7microM and 3.4microM, and the activity of HIV-1 reverse transcriptase with an IC(50) of 4.9microM. Its N-terminal sequence differed from those of antifungal proteins which have been reported to date.

  4. Characterization and quantification of flavonoids and hydroxycinnamic acids in curly kale (Brassica oleracea L. Convar. acephala Var. sabellica) by HPLC-DAD-ESI-MSn.

    Science.gov (United States)

    Olsen, Helle; Aaby, Kjersti; Borge, Grethe Iren A

    2009-04-08

    Kale is a leafy green vegetable belonging to the Brassicaceae family, a group of vegetables including cabbage, broccoli, cauliflower, and Brussels sprouts, with a high content of health-promoting phytochemicals. The flavonoids and hydroxycinammic acids of curly kale ( Brassica oleracea L. ssp. oleracea convar. acephala (DC.) Alef. var. sabellica L.), a variety of kale, were characterized and identified primarily through HPLC-DAD-ESI-MS(n) analysis. Thirty-two phenolic compounds including glycosides of quercetin and kaempferol and derivatives of p-coumaric, ferulic, sinapic, and caffeic acid were tentatively identified, providing a more complete identification of phenolic compounds in curly kale than previously reported. Moreover, three hydroxycinnamic acids and one flavonoid with an unusual high grade of glycosylation, quercetin-3-disinapoyl-triglucoside-7-diglucoside, have been tentatively identified for the first time. The influence of different extraction conditions (extraction method, solvent type, solvent/solid ratio, and duration of extraction) was investigated. The total flavonol and hydroxycinnamic acid contents in curly kale determined as rutin equivalents (RE) were 646 and 204 mg of RE/100 g of fresh weight (fw), respectively. The contents of individual flavonoids ranged from 2 to 159 mg of RE/100 g of fw, with main compounds kaempferol-3-sinapoyl-diglucoside-7-diglucoside (18.7%) and quercetin-3-sinapoyl-diglucoside-7-diglucoside (16.5%). After acidic hydrolysis, two flavonol aglycones were identified in curly kale, quercetin and kaempferol, with total contents of 44 and 58 mg/100 g of fw, respectively.

  5. Inhibitory effects of kale ingestion on metabolism by cytochrome P450 enzymes in rats.

    Science.gov (United States)

    Yamasaki, Izumi; Yamada, Masayoshi; Uotsu, Nobuo; Teramoto, Sachiyuki; Takayanagi, Risa; Yamada, Yasuhiko

    2012-01-01

    Kale (Brassica oleracea L. var acephala DC) is a leafy green vegetable belonging to the cabbage family (Brassicaceae) that contains a large amount of health-promoting phytochemicals. There are any reports about the effects of kale ingestion on the chemoprevention function and mechanism, but the interactions between kale and drugs have not been researched. We investigated the effects of kale intake on cytochrome P450 (CYP) metabolism by using cocktail probe drugs, including midazolam (for CYP3A4), caffeine (for CYP1A2), dextromethorphan (for CYP2D6), tolbutamide (for CYP2C9), omeprazole (for CYP2C19), and chlorzoxazone (for CYP2E1). Cocktail drugs were administered into rats treated with kale and cabbage (2000 mg/kg) for a week. The results showed that kale intake induced a significant increase in plasma levels and the AUC of midazolam, caffeine, and dextromethorphan. In addition, the plasma concentration and AUC of omeprazole tended to increase. Additionally, no almost differences in the mRNA expression levels of CYP enzymes in the liver were observed. In conclusion, kale ingestion was considered to have an inhibitory effect on the activities of CYP3A4, 1A2, 2D6, and 2C19 for a reason competitive inhibition than inhibitory changes in the mRNA expressions.

  6. A more complete picture of metal hyperaccumulation through next-generation sequencing technologies

    Directory of Open Access Journals (Sweden)

    Nathalie eVerbruggen

    2013-10-01

    Full Text Available The mechanistic understanding of metal hyperaccumulation has benefitted immensely from the use of molecular genetics tools developed for Arabidopsis thaliana. The revolution in DNA sequencing will enable even greater strides in the near future, this time not restricted to the family Brassicaceae. Reference genomes are within reach for many ecologically interesting species including heterozygous outbreeders. They will allow deep RNA-seq transcriptome studies and the re-sequencing of contrasting individuals to unravel the genetic basis of phenotypic variation. Cell-type specific transcriptome analyses, which will be essential for the dissection of metal translocation pathways in hyperaccumulators, can be achieved through the combination of RNA-seq and translatome approaches. Affordable high-resolution genotyping of many individuals enables the elucidation of quantitative trait loci in intra- and interspecific crosses as well as through genome-wide association mapping across large panels of accessions. Furthermore, genome-wide scans have the power to detect loci under recent selection. Together these approaches will lead to a detailed understanding of the evolutionary path towards the emergence of hyperaccumulation traits.

  7. Florivores prefer white versus pink petal color morphs in wild radish, Raphanus sativus.

    Science.gov (United States)

    McCall, Andrew C; Murphy, Stephen J; Venner, Colin; Brown, Monique

    2013-05-01

    Many hypotheses suggest that pollinators act to maintain or change floral color morph frequencies in nature, although pollinator preferences do not always match color morph frequencies in the field. Therefore, non-pollinating agents may also be responsible for color morph frequencies. To test this hypothesis, we examined whether Raphanus sativus plants with white flowers received different amounts of florivory than plants with pink flowers, and whether florivores preferred one floral color over the other. We found that white-flowered plants received significantly more floral damage than pink-flowered plants in eight populations over 4 years in northern California. Both generalists and specialists on Brassicaceae preferred white petals in choice and short-term no choice tests. In performance tests, generalists gained more weight on white versus pink petals whereas specialists gained similar amounts of weight on pink and white morphs. Because our results suggest that florivores prefer and perform better on white versus pink flowers, these insects may have the opportunity to affect the frequency of color morphs in the field.

  8. Metabolic Activity of Radish Sprouts Derived Isothiocyanates in Drosophila melanogaster

    Directory of Open Access Journals (Sweden)

    Nieves Baenas

    2016-02-01

    Full Text Available We used Drosophila melanogaster as a model system to study the absorption, metabolism and potential health benefits of plant bioactives derived from radish sprouts (Raphanus sativus cv. Rambo, a Brassicaceae species rich in glucosinolates and other phytochemicals. Flies were subjected to a diet supplemented with lyophilized radish sprouts (10.6 g/L for 10 days, containing high amounts of glucoraphenin and glucoraphasatin, which can be hydrolyzed by myrosinase to the isothiocyanates sulforaphene and raphasatin, respectively. We demonstrate that Drosophila melanogaster takes up and metabolizes isothiocyanates from radish sprouts through the detection of the metabolite sulforaphane-cysteine in fly homogenates. Moreover, we report a decrease in the glucose content of flies, an upregulation of spargel expression, the Drosophila homolog of the mammalian PPARγ-coactivator 1 α, as well as the inhibition of α-amylase and α-glucosidase in vitro. Overall, we show that the consumption of radish sprouts affects energy metabolism in Drosophila melanogaster which is reflected by lower glucose levels and an increased expression of spargel, a central player in mitochondrial biogenesis. These processes are often affected in chronic diseases associated with aging, including type II diabetes mellitus.

  9. Control of Xiphinema index populations by fallow plants under greenhouse and field conditions.

    Science.gov (United States)

    Villate, Laure; Morin, Elisa; Demangeat, Gérard; Van Helden, Maarten; Esmenjaud, Daniel

    2012-06-01

    The dagger nematode Xiphinema index has a high economic impact in vineyards by direct pathogenicity and above all by transmitting the Grapevine fanleaf virus (GFLV). Agrochemicals have been largely employed to restrict the spread of GFLV by reducing X. index populations but are now banned. As an alternative to nematicides, the use of fallow plants between two successive vine crops was assessed. We selected plant species adapted to vineyard soils and exhibiting negative impact on nematodes and we evaluated their antagonistic effect on X. index in greenhouse using artificially infested soil, and in naturally infested vineyard conditions. The screening was conducted with plants belonging to the families Asteraceae (sunflower, marigold, zinnia, and nyjer), Poaceae (sorghum and rye), Fabaceae (white lupin, white melilot, hairy vetch, and alfalfa), Brassicaceae (rapeseed and camelina), and Boraginaceae (phacelia). In the greenhouse controlled assay, white lupin, nyjer, and marigold significantly reduced X. index populations compared with that of bare soil. The vineyard assay, designed to take into account the aggregative pattern of X. index distribution, revealed that marigold and hairy vetch are good candidates as cover crops to reduce X. index populations in vineyard. Moreover, this original experimental design could be applied to manage other soilborne pathogens.

  10. Genetic diversity analysis of Lepidium sativum (Chandrasur) using inter simple sequence repeat (ISSR) markers

    Institute of Scientific and Technical Information of China (English)

    Amandeep Kaur; Rakesh Kumar; Suman Rani; Anita Grewal

    2015-01-01

    Lepidium sativum (commonly known as garden cress) belongs to the family Brassicaceae. It is a fast-growing erect, annual herbaceous plant. Its seeds possess significant fracture healing, anti-asthmatic, anti-diabetic, hypoglycemic, nephrocurative and nephroprotective activ-ities. In the present study, we assessed the genetic diversity of various genotypes of L. sativum using inter-simple sequence repeat (ISSR) markers. Out of 41 ISSR primers screened, 32 primers showed significant, clear and repro-ducible bands. A total of 510 amplified bands were obtained using 32 ISSR primers, out of which 422 bands were poly-morphic and 88 bands were monomorphic. The percentage of polymorphism was found to be 82. A total of 35 unique alleles ranging insize from 200 to 2,900 bp were observed. Cluster analysis based on unweighted pair-group method, arithmetic mean divided the 18 genotypes into two main clusters, with the first having only HCS-08 genotype of L. sativum and other having all of the other 17 genotypes. The Jaccard similarity coefficient revealed a broad range 32–72%genetic relatedness among the 18 genotypes.

  11. Chemical composition and biological screening of Capsella bursa-pastoris

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    Clara Grosso

    2011-08-01

    Full Text Available Capsella bursa-pastoris (L. Medik. (Brassicaceae is a wild herb with high nutritional value that can be eaten raw or cooked. A metabolomic study was performed with different extracts of its aerial parts that were tested concerning their antiradical, acetylcholinesterase inhibitory and antibacterial activities. Phenolic compounds were identified and quantified by HPLC-DAD, organic acids and amino acids were determined by HPLC-UV, while free fatty acids and sterols were analysed by GC-ITMS. The vegetal material was rich in kaempferol-3-O-rutinoside (mean value 2247.09 mg/kg of dry plant, quinic acid (95628.00 mg/kg of dry plant, arginine (mean value of 1.18 mg/kg of dry plant, palmitic acid (284.48 mg/kg and β-sitosterol (28%. The extracts presented a concentration-dependent antiradical activity (against DPPH•, O2•- and LOO•, being most effective against •NO (EC25 0.20 µg/mL. In addition, the extracts were also acetylcholinesterase inhibitors and antibacterial active, revealing that, besides the plant's good nutritional value, it presents important biological properties as well.

  12. Antigenotoxic properties of Eruca sativa (rocket plant), erucin and erysolin in human hepatoma (HepG2) cells towards benzo(a)pyrene and their mode of action.

    Science.gov (United States)

    Lamy, Evelyn; Schröder, Julia; Paulus, Stefanie; Brenk, Peter; Stahl, Thorsten; Mersch-Sundermann, Volker

    2008-07-01

    In recent years, rocket plant (Eruca sativa) has gained greater importance as a vegetable and spice, especially among Europeans. E. sativa is a member of the Brassicaceae, which is considered to be an important chemopreventive plant family. In the present study, we assessed the chemopreventive potency and underlying mechanisms of extracts of E. sativa in HepG2 cells. No genotoxic effect could be observed in HepG2 cells treated with up to 50 microl/ml plant juice for 24 h when using the comet assay. In antigenotoxicity experiments, E. sativa extract reduced the benzo(a)pyrene-induced genotoxicity in a U-shaped manner. This effect was accompanied by a significant induction of glutathione S-transferase. No significant suppression of B(a)P-induced CYP1A1 protein expression or enzyme activity could be observed. Chemical analysis of the plant material by gas chromatography identified the isothiocyanates erucin, sulforaphane, erysolin and phenylethyl isothiocyanate. Results derived with the single ITC compounds support the assumption that their synergistic interaction is responsible for the strong antigenotoxicity of the plant material. The present study provided an assessment of the bioactive effects of rocket plant extract in a human cell culture system. This could help to evaluate the balance between beneficial vs. possible adverse effects of rocket plant consumption.

  13. Glucosinolate biosynthesis: demonstration and characterization of the condensing enzyme of the chain elongation cycle in Eruca sativa.

    Science.gov (United States)

    Falk, Kimberly L; Vogel, Christine; Textor, Susanne; Bartram, Stefan; Hick, Alastair; Pickett, John A; Gershenzon, Jonathan

    2004-04-01

    Glucosinolates are a group of sulfur-rich thioglucoside natural products common in the Brassicaceae and related plant families. The first phase in the formation of many glucosinolates involves the chain extension of the amino acid methionine. Additional methylene groups are inserted into the side chain of methionine by a three-step elongation cycle involving 2-oxo acid intermediates. This investigation demonstrated the first step of this chain elongation cycle in a partially-purified preparation from arugula (Eruca sativa). The 2-oxo acid derived from methionine, 4-methylthio-2-oxobutanoic acid, was shown to condense with acetyl-CoA to form 2-(2'-methylthioethyl)malate. The catalyst, designated as a 2-(omega-methylthioalkyl)malate synthase, belongs to a family of enzymes that mediate the condensation of acyl-CoAs with 2-oxo acids, including citrate synthase of the citric acid cycle, and 2-isopropylmalate synthase of leucine biosynthesis. The 2-(omega-methylthioalkyl)malate synthase studied here shares properties with other enzymes of this class, but appears chromatographically distinct and is found only in extracts of plant species producing glucosinolates from chain-elongated methionine derivatives. Although the principal glucosinolates of arugula are formed from methionine that has undergone two rounds of chain elongation to form dihomomethionine, studies with substrates and substrate analogs of different chain lengths showed that the isolated enzyme is responsible only for the condensation step of the first round of elongation.

  14. Identification and quantification of glucosinolates in sprouts derived from seeds of wild Eruca sativa L. (salad rocket) and Diplotaxis tenuifolia L. (wild rocket) from diverse geographical locations.

    Science.gov (United States)

    Bennett, Richard N; Carvalho, Rosa; Mellon, Fred A; Eagles, John; Rosa, Eduardo A S

    2007-01-10

    The Brassicaceae rocket species Eruca sativa L. (salad rocket) and Diplotaxis tenuifolia L. (wild rocket) are consumed throughout the world in salads, predominantly the leaves but also the flowers and more recently the sprouts (seedlings). Ontogenic profiling of glucosinolates and flavonoids in plants derived from commercial seed of these species has previously been done, but no studies have been conducted to determine how geographical origin affects glucosinolate composition in rocket species. Seeds from wild E. sativa L. and D. tenuifolia L. from diverse regions of the world were obtained from gene banks and grown under controlled conditions. Sprouts were harvested when they would normally be harvested for consumption, and glucosinolates were extracted and profiled in these accessions. All of the sprouts from Italian E. sativa L. had consistently high total glucosinolate content, with only a few exceptions, and also the highest percentage contents of 4-mercaptobutylglucosinolate. In contrast, sprouts produced from Central and Eastern European seeds had a much higher percentage of 4-methylthiobutylglucosinolate. With a single exception, Tunisia, all sprouts produced from North African seeds had very high 4-methylthiobutylglucosinolate contents. The single sample from China had a high total glucosinolate content and glucosinolate profile that was very similar to the accessions from Uzbekistan and Pakistan. All of the D. tenuifolia L. sprouts had consistently high total glucosinolate contents, and a high percentage of this was 4-mercaptobutylglucosinolate. This glucosinolate variation in levels and profiles of the rockets can be used for genetic studies, selected breeding, and human intervention studies.

  15. Evaluation of 31 Potential Biofumigant Brassicaceous Plants as Hosts for Three Meloiodogyne Species

    Science.gov (United States)

    Edwards, Scott; Ploeg, Antoon

    2014-01-01

    Brassicaceous cover crops can be used for biofumigation after soil incorporation of the mowed crop. This strategy can be used to manage root-knot nematodes (Meloidogyne spp.), but the fact that many of these crops are host to root-knot nematodes can result in an undesired nematode population increase during the cultivation of the cover crop. To avoid this, cover crop cultivars that are poor or nonhosts should be selected. In this study, the host status of 31 plants in the family Brassicaceae for the three root-knot nematode species M. incognita, M. javanica, and M. hapla were evaluated, and compared with a susceptible tomato host in repeated greenhouse pot trials. The results showed that M. incognita and M. javanica responded in a similar fashion to the different cover cultivars. Indian mustard (Brassica juncea) and turnip (B. rapa) were generally good hosts, whereas most oil radish cultivars (Raphanus. sativus ssp. oleiferus) were poor hosts. However, some oil radish cultivars were among the best hosts for M. hapla. The arugula (Eruca sativa) cultivar Nemat was a poor host for all three nematode species tested. This study provides important information for chosing a cover crop with the purpose of managing root-knot nematodes. PMID:25276003

  16. Replacing methyl bromide in annual strawberry production with glucosinolate-containing green manure crops.

    Science.gov (United States)

    Lazzeri, Luca; Baruzzi, Gianluca; Malaguti, Lorena; Antoniacci, Loredana

    2003-09-01

    The use of biocidal green manure crops is an agronomic technique for amending soil with fresh organic matter containing volatile compounds active in controlling some soil-borne pests and diseases. Two new selections of the Brassicaceae family were cultivated, incorporated before planting strawberries and tested as an alternative to fumigation with methyl bromide. Two biocidal green manure crops (Brassica juncea L sel ISCI20, Eruca sativa Mill cv Nemat) containing glucosinolate-myrosinase systems, a conventional green manure (barley), untreated soil and a fumigated control were evaluated during two seasons. The effect of these soil management systems on subsequent strawberry performance was evaluated by monitoring yield and plant growth parameters. In both years, biocidal plant green manure treatments led to a fruit yield lower than with methyl bromide, but higher than with conventional green manure or untreated soil. These results confirm the good prospects for biocidal green manures, not only as an environmentally friendly alternative to methyl bromide in conventional agriculture, but also in organic agriculture as an alternative to conventional green manure crops.

  17. In vitro wound healing and cytotoxic effects of sinigrin-phytosome complex.

    Science.gov (United States)

    Mazumder, Anisha; Dwivedi, Anupma; du Preez, Jan L; du Plessis, Jeanetta

    2016-02-10

    Sinigrin is a class of glucosinolates found naturally in plants of the Brassicaceae family. Lately, studies have shown that sinigrin possesses anticancer, antibacterial and anti-inflammatory activities. Since its efficacy has not been explored on wound healing, we examined the effect of sinigrin on HaCaT cells. We also aimed at formulating sinigrin into phytosome to form a sinigrin-phytosome complex and study the wound healing and cytotoxic activities on A-375 and HaCaT cells. Sinigrin was efficiently formulated into the phytosome with an average particle size of 153 ± 39 nm, zeta potential of 10.09 ± 0.98 mV and complex efficiency of 69.5 ± 5%. The formation of the sinigrin-phytosome complex was confirmed by DSC and FTIR analysis. The sinigrin-phytosome complex significantly exhibited wound healing effects when compared to sinigrin alone. After 42 h, the phytosome complex completely healed the wound, whereas sinigrin alone showed only 71% wound closure. The sinigrin-phytosome complex displayed minimal toxicity towards HaCaT cells and at higher concentrations, it showed potent activity towards A-375. The results indicated that sinigrin-phytosome complex augmented the therapeutic potential of sinigrin towards the wound healing activity and this approach should be explored further for cancerous wound treatment.

  18. Is there a role for trihelix transcription factors in embryo maturation?

    Science.gov (United States)

    Barr, Melissa S.; Willmann, Matthew R.; Jenik, Pablo D.

    2012-01-01

    The development of the angiosperm seed includes the accumulation of storage products, the loss of most of its water and the establishment of dormancy. While much is known about the pathways that initiate maturation during mid-embryogenesis or repress it after germination, only recently has it been shown that other mechanisms repress the program during early embryogenesis. Two recent reports have shown that microRNAs are critical regulators of maturation in Arabidopsis early embryogenesis. Two closely related trihelix transcription factors, ASIL1 and ASIL2, were identified as probable partially redundant repressors of early maturation downstream of the microRNA-synthesizing enzyme DICER-LIKE1. An overlap between the genes upregulated in asil1-1 and dcl1-15 mutants support this conclusion. ASIL2 orthologs are found across seed plants, indicating that their role in maturation might be conserved. ASIL1 arose from the ancestral ASIL2 clade by a gene duplication event in the Brassicaceae, although it is not clear whether its function has diverged. PMID:22353863

  19. Senescence-specific Alteration of Hydrogen Peroxide Levels in Arabidopsis thaliana and Oilseed Rape Spring Variety Brassica napus L.cv.Mozart

    Institute of Scientific and Technical Information of China (English)

    Stefan Bieker; Lena Riester; Mark Stahl; Jürgen Franzaring; Ulrike Zentgraf

    2012-01-01

    In order to analyze the signaling function of hydrogen peroxide (H2O2) production in senescence in more detail,we manipulated intracellular H2O2 levels in Arabidopsis thaliala (L.) Heynh by using the hydrogenperoxide-sensitive part of the Escherichia coli transcription regulator OxyR,which was directed to the cytoplasm as well as into the peroxisomes.H2O2 levels were lowered and senescence was delayed in both transgenic lines,but OxyR was found to be more effective in the cytoplasm.To transfer this knowledge to crop plants,we analyzed oilseed rape plants Brassica napus L.cv.Mozart for H2O2 and its scavenging enzymes catalase (CAT) and ascorbate peroxidase (APX) during leaf and plant development.H2O2 levels were found to increase during bolting and flowering time,but no increase could be observed in the very late stages of senescence.With increasing H2O2 levels,CAT and APX activities declined,so it is likely that similar mechanisms are used in oilseed rape and Arabidopsis to control H2O2 levels.Under elevated CO2 conditions,oilseed rape senescence was accelerated and coincided with an earlier increase in H2O2 levels,indicating that H2O2 may be one of the signals to inducing senescence in a broader range of Brassicaceae.

  20. Forensic palynological analysis of intestinal contents of a Korean mummy.

    Science.gov (United States)

    Arguelles, Paulette; Reinhard, Karl; Shin, Dong Hoon

    2015-06-01

    Experimental studies show that pollen resides in the intestinal tract for a minimum of seven days to at least 21 days. Because of this long residence time, pollen analysis is an important avenue of forensic research. Pollen provides evidence of the environment of the decedent as well as foods and medicine. We analyzed a coprolite recovered from a Korean mummy. The decedent was a high-ranking general who lived during the 16th or 17th centuries. Twenty pollen types were recovered. These ranged from 100 s to 10,000 s of pollen grains per gram of coprolite. Importantly, comparison of the coprolite pollen spectrum to modern aeropalynology studies of Korea suggests that the general died in winter between middle November to late February. Economic pollen types were most abundant. Economic refers to dietary, medicinal, spice, and beverage types. Dietary pollen types include pollen from Oryza (rice), Eriogonum (buckwheat), Brassicaceae (mustard family), and Solanaceae (tomato-chile pepper family). Pollen consistent with dandelion is present and may represent its use as food. Tens of thousands of grains from water plants, bur-reed or cattail, dominate the pollen spectrum. We believe that this was introduced with water. The large numbers of water-related pollen suggest that the general consumed broth, tea, or soup for a considerable time before death.

  1. VEGETATIVE GROWTH AND PRODUCTIVITY OF A NUMBER OF INTRODUCED BROCCOLI CULTIVARS (Brassica oleracea L. var. italica Plenck. IN BATUR VILLAGE, KINTAMANI DISTRICT, BANGLI REGENCY, BALI

    Directory of Open Access Journals (Sweden)

    Ni Kadek Raleni

    2015-09-01

    Full Text Available Broccoli (Brassica oleracea L. var. italica Plenck. is a vegetable crop belongs to Brassicaceae family. Broccoli has high nutrition, high in fiber and contains isotiacyanate that has anticancer activity. Broccoli market in Indonesia, particularly in modern supermarkets, increases 15-20% per year, however, productivity was still low, therefore effort to increase broccoli production in Indonesia need to be investigated. Field trial was conducted at Batur Village, Kintamani District, Bangli Regency, Bali, to find out cultivars that were adapted in tropical region. Introduced cultivars being trialed were ‘Alborada’, ‘Belstar’, ‘Fiesta’, ‘Sarasota’, ‘Bay Meadows’, ‘Castle Dome’, ‘Liutenant’, ‘Iron Man’, ‘Marathon’, ‘Green Gold’, ‘Imperial’, ‘Green Magic’ and ‘Lucky’ as control. Variable observed were vegetative growth, curding period, and productivity of each cultivar. This study employed Randomized Completely Block Design with 3 replicates (plots and 8 plants each plot. Data were analyzed using ANOVA (Analysis of variance on Costat program, followed by Duncan’s Multiple Range Test (DMRT on 1% level. Results show that each cultivar varied in adaptability in tropical region. ‘Castle Dome’ has the highest productivity, while ‘Fiesta’ was the lowest.

  2. To Have and to Hold: Selection for Seed and Fruit Retention During Crop Domestication.

    Science.gov (United States)

    Li, L-F; Olsen, K M

    2016-01-01

    Crop domestication provides a useful model system to characterize the molecular and developmental bases of morphological variation in plants. Among the most universal changes resulting from selection during crop domestication is the loss of seed and fruit dispersal mechanisms, which greatly facilitates harvesting efficiency. In this review, we consider the molecular genetic and developmental bases of the loss of seed shattering and fruit dispersal in six major crop plant families, three of which are primarily associated with seed crops (Poaceae, Brassicaceae, Fabaceae) and three of which are associated with fleshy-fruited crops (Solanaceae, Rosaceae, Rutaceae). We find that the developmental basis of the loss of seed/fruit dispersal is conserved in a number of independently domesticated crops, indicating the widespread occurrence of developmentally convergent evolution in response to human selection. With regard to the molecular genetic approaches used to characterize the basis of this trait, traditional biparental quantitative trait loci mapping remains the most commonly used strategy; however, recent advances in next-generation sequencing technologies are now providing new avenues to map and characterize loss of shattering/dispersal alleles. We anticipate that continued application of these approaches, together with candidate gene analyses informed by known shattering candidate genes from other crops, will lead to a rapid expansion of our understanding of this critical domestication trait.

  3. Transfer of Dicamba Tolerance from Sinapis arvensis to Brassica napus via Embryo Rescue and Recurrent Backcross Breeding.

    Directory of Open Access Journals (Sweden)

    M Jugulam

    Full Text Available Auxinic herbicides (e.g. dicamba are extensively used in agriculture to selectively control broadleaf weeds. Although cultivated species of Brassicaceae (e.g. Canola are susceptible to auxinic herbicides, some biotypes of Sinapis arvensis (wild mustard were found dicamba resistant in Canada. In this research, dicamba tolerance from wild mustard was introgressed into canola through embryo rescue followed by conventional breeding. Intergeneric hybrids between S. arvensis (2n = 18 and B. napus (2n = 38 were produced through embryo rescue. Embryo formation and hybrid plant regeneration was achieved. Transfer of dicamba tolerance from S. arvensis into the hybrid plants was determined by molecular analysis and at the whole plant level. Dicamba tolerance was introgressed into B. napus by backcrossing for seven generations. Homozygous dicamba-tolerant B. napus lines were identified. The ploidy of the hybrid progeny was assessed by flow cytometry. Finally, introgression of the piece of DNA possibly containing the dicamba tolerance gene into B. napus was confirmed using florescence in situ hybridization (FISH. This research demonstrates for the first time stable introgression of dicamba tolerance from S. arvensis into B. napus via in vitro embryo rescue followed by repeated backcross breeding. Creation of dicamba-tolerant B. napus varieties by this approach may have potential to provide options to growers to choose a desirable herbicide-tolerant technology. Furthermore, adoption of such technology facilitates effective weed control, less tillage, and possibly minimize evolution of herbicide resistant weeds.

  4. Intertribal hybrid plants produced from crossing Arabidopsis thaliana with apomictic Boechera.

    Science.gov (United States)

    Lohe, Allan R; Perotti, Enrico

    2012-08-01

    Arabidopsis thaliana and Boechera belong to different tribes of the Brassicaceae and last shared a common ancestor 13-35 million years ago. A. thaliana reproduces sexually but some Boechera accessions reproduce by apomixis (asexual reproduction by seed). The two species are reproductively isolated, preventing introgression of the trait(s) controlling apomixis from Boechera into A. thaliana and their molecular characterisation. To identify if "escapers" from such hybridisation barriers exist, we crossed diploid or tetraploid A. thaliana mothers carrying a conditional male sterile mutation with a triploid Boechera apomict. These cross-pollinations generated zygotes and embryos. Most aborted or suffered multiple developmental defects at all stages of growth, but some seed matured and germinated. Seedlings grew slowly but eventually some developed into mature plants that were novel synthetic allopolyploid hybrids. With one exception, intertribal hybrids contained three Boechera plus either one or two A. thaliana genomes (depending on maternal ploidy) and were male and female sterile. The exception was a semi-fertile, sexual partial hybrid with one Boechera plus two A. thaliana genomes. The synthesis of "escapers" that survive rigorous early developmental challenges in crosses between A. thaliana and Boechera demonstrates that the inviability form of postzygotic reproductive isolation separating these distantly related species is not impenetrable. The recovery of a single semi-fertile partial hybrid also demonstrates that hybrid sterility, another form of postzygotic reproductive isolation, can be overcome between these species.

  5. El polen de las mieles del valle de Río Negro, provincia fitogeográfica del monte (Argentina

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    María C. Tellería

    2000-01-01

    Full Text Available Tellería, M. C. & Forcone, A. 2000. El polen de las mieles del valle de Río Negro, provinciafitogeográfica del monte (Argentina. Darwiniana 38(3-4: 273-277.Se realizó el análisis palinológico de 41 muestras de miel del valle de Río Negro. El contenido polínicode las muestras fue acetolizado e identificado por comparación con una colección de polen de referencia.Del total de muestras examinadas, 26 fueron mixtas y las restantes monoflorales de: Tamarix gallica (8muestras, Eucalyptus sp. (2 muestras, Melilotus sp. (1 muestra, Centaurea sp. (1 muestra, Prosopissp. (1 muestra, Brassicaceae (1 muestra y Monttea aphylla (1 muestra. Estas mieles pueden diferenciar-se de aquellas que se producen en el valle inferior del río Chubut, en la misma región fitogeográfica

  6. Characterization of the hrpZ gene from Pseudomonas syringae pv. maculicolaM2

    Science.gov (United States)

    Álvarez-Mejía, César; Rodríguez-Ríos, Dalia; Hernández-Guzmán, Gustavo; López-Ramírez, Varinia; Valenzuela-Soto, Humberto; Marsch, Rodolfo

    2015-01-01

    Pseudomonas syringae pv. maculicola is a natural pathogen of members of the Brassicaceae plant family. Using a transposon-based mutagenesis strategy in Pseudomonas syringaepv. maculicola M2 (PsmM2), we conducted a genetic screen to identify mutants that were capable of growing in M9 medium supplemented with a crude extract from the leaves of Arabidopsis thaliana. A mutant containing a transposon insertion in the hrpZ gene (PsmMut8) was unable to infect adult plants from Arabidopsis thaliana or Brassica oleracea, suggesting a loss of pathogenicity. The promotorless cat reporter present in the gene trap was expressed if PsmMut8 was grown in minimal medium (M9) supplemented with the leaf extract but not if grown in normal rich medium (KB). We conducted phylogenetic analysis using hrpAZB genes, showing the classical 5-clade distribution, and nucleotide diversity analysis, showing the putative position for selective pressure in this operon. Our results indicate that the hrpAZB operon from Pseudomonas syringaepv. maculicola M2 is necessary for its pathogenicity and that its diversity would be under host-mediated diversifying selection. PMID:26413080

  7. Boechera species exhibit species-specific responses to combined heat and high light stress.

    Science.gov (United States)

    Gallas, Genna; Waters, Elizabeth R

    2015-01-01

    As sessile organisms, plants must be able to complete their life cycle in place and therefore tolerance to abiotic stress has had a major role in shaping biogeographical patterns. However, much of what we know about plant tolerance to abiotic stresses is based on studies of just a few plant species, most notably the model species Arabidopsis thaliana. In this study we examine natural variation in the stress responses of five diverse Boechera (Brassicaceae) species. Boechera plants were exposed to basal and acquired combined heat and high light stress. Plant response to these stresses was evaluated based on chlorophyll fluorescence measurements, induction of leaf chlorosis, and gene expression. Many of the Boechera species were more tolerant to heat and high light stress than A. thaliana. Gene expression data indicates that two important marker genes for stress responses: APX2 (Ascorbate peroxidase 2) and HsfA2 (Heat shock transcription factor A2) have distinct species-specific expression patterns. The findings of species-specific responses and tolerance to stress indicate that stress pathways are evolutionarily labile even among closely related species.

  8. Screening of medicinal plants for induction of somatic segregation activity in Aspergillus nidulans.

    Science.gov (United States)

    Ramos Ruiz, A; De la Torre, R A; Alonso, N; Villaescusa, A; Betancourt, J; Vizoso, A

    1996-07-05

    Knowledge about mutagenic properties of plants commonly used in traditional medicine is limited. A screening for genotoxic activity was carried out in aqueous or alcoholic extracts prepared from 13 medicinal plants widely used as folk medicine in Cuba: Lepidium virginicum L. (Brassicaceae): Plantago major L. and Plantago lanceolata L. (Plantaginaceae); Ortosiphon aristatus Blume, Mentha x piperita L., Melissa officinalis L. and Plectranthus amboinicus (Lour.) Spreng. (Lamiaceae); Cymbopogon citratus (DC.) Stapf (Poaceae); Passiflora incarnata L. (Passifloraceae); Zingiber officinale Roscoe (Zingiberaceae); Piper auritum HBK. (Piperaceae); Schinus terebinthifolius Raddi (Anacardeaceae) and Momordica charantia L. (Cucurbitaceae). A plate incorporation assay with Aspergillus nidulans was employed, allowing detection of somatic segregation as a result of mitotic crossing-over, chromosome malsegregation or clastogenic effects. Aspergillus nidulans D-30, a well-marked strain carrying four recessive mutations for conidial color in heterozygosity, which permitted the direct visual detection of segregants, was used throughout this study. As a result, only in the aqueous extract of one of the plants screened (Momordica charantia) a statistical significant increase in the frequency of segregant sectors per colony was observed, and consequently, a genotoxic effect is postulated.

  9. Arbuscular mycorrhizal associations and occurrence of dark septate endophytes in the roots of Brazilian weed plants.

    Science.gov (United States)

    Massenssini, André Marcos; Bonduki, Víctor Hugo Araújo; Tótola, Marcos Rogério; Ferreira, Francisco Affonso; Costa, Maurício Dutra

    2014-02-01

    The ecology of weed plants includes their interactions with soil microorganisms, such as mutualistic partners that may contribute to their adaptation and competitive success in the agricultural fields. Despite the importance of microorganisms to plant growth, knowledge on weed-symbiont associations is still incipient compared to crops. Thus, a survey for the presence of arbuscular mycorrhiza (AM) and dark septate endophyte (DSE) associations in the roots of 50 weed species was done in three distinct areas during the dry and rainy seasons. We found that 41 and 29 out of the 50 species were associated with AM fungi and DSE, respectively, and 27 species presented both associations. All the plant species not forming AM belong to families thought to be nonmycorrhizal, such as Amaranthaceae, Commelinaceae, Brassicaceae, and Cyperaceae. The most common morphotype of AM observed was the Arum-type. No significant differences were found in root length colonization between the areas or seasons. For 19 species surveyed, this is the first report on their mycorrhizal status.

  10. Arbuscular mycorrhiza of plants from the Mountain Botanical Garden in Zakopane

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    Szymon Zubek

    2014-08-01

    Full Text Available The mycorrhizal status of 77 plant species collected from the Mountain Botanical Garden of the Polish Academy of Sciences in Zakopane (southern Poland was surveyed. These plants include rare, endemic and threatened species in the Tatra Mts. (the Western Carpathians and are maintained in the botanical garden in order to develop effective methods of protection and cultivation. Plants belonging to Brassicaceae, Caryophyllaceae, Dryopteridaceae, Juncaceae, Polygonaceae, Rubiaceae and Woodsiaceae families were nonmycorrhizal. 41 species formed AM symbiosis. Spores of nine AMF spccies (Glomeromycota, including Archaeospora trappei, Glomus aggregatum, G. claroideum, G. constrictum, G. deserticola, G. geosponrum, G. microcarpum, G. mosseae and G.rubiforme were isolated for the first time from this region of Poland. In addition, the occurrence of the fine endophyte, G. tenue was detected in roots of 18 species from the study area, although formation of arbuscules by this fungus was observed rarely. AM fungi were sporadically accompanied by dark septate endophytes (DSE. 70% of nonmycorrhizal plant sepcies were devoid of DSE.

  11. The impact of the absence of aliphatic glucosinolates on water transport under salt stress in Arabidopsis thaliana

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    Mcarmen eMartinez-Ballesta

    2015-07-01

    Full Text Available Members of the Brassicaceae are known for their contents of nutrients and health-promoting phytochemicals, including glucosinolatesExposure to salinity increases the levels of several of these compounds, but their role in abiotic stress response is unclear. The effect of aliphatic glucosinolates on plant water balance and growth under salt stress, involving aquaporins, was investigated by means of Arabidopsis thaliana mutants impaired in aliphatic glucosinolate biosynthesis, which is controlled by two transcription factors: Myb28 and Myb29. The double mutant myb28myb29, completely lacking aliphatic glucosinolates, was compared to wild type Col-0 (WT and the single mutant myb28. A greater reduction in the hydraulic conductivity of myb28myb29 was observed under salt stress, when compared to the WT and myb28; this correlated with the abundance of both PIP1 and PIP2 aquaporin subfamilies. Also, changes in root architecture in response to salinity were genotype dependent. Treatment with NaCl altered glucosinolates biosynthesis in a similar way in WT and the single mutant and differently in the double mutant. The results indicate that short-chain aliphatic glucosinolates may contribute to water saving under salt stress

  12. Flavor, glucosinolates, and isothiocyanates of nau (Cook's scurvy grass, Lepidium oleraceum) and other rare New Zealand Lepidium species.

    Science.gov (United States)

    Sansom, Catherine E; Jones, Veronika S; Joyce, Nigel I; Smallfield, Bruce M; Perry, Nigel B; van Klink, John W

    2015-02-18

    The traditionally consumed New Zealand native plant nau, Cook's scurvy grass, Lepidium oleraceum, has a pungent wasabi-like taste, with potential for development as a flavor ingredient. The main glucosinolate in this Brassicaceae was identified by LC-MS and NMR spectroscopy as 3-butenyl glucosinolate (gluconapin, 7-22 mg/g DM in leaves). The leaves were treated to mimic chewing, and the headspace was analyzed by solid-phase microextraction and GC-MS. This showed that 3-butenyl isothiocyanate, with a wasabi-like flavor, was produced by the endogenous myrosinase. Different postharvest treatments were used to create leaf powders as potential flavor products, which were tasted and analyzed for gluconapin and release of 3-butenyl isothiocyanate. A high drying temperature (75 °C) did not give major glucosinolate degradation, but did largely inactivate the myrosinase, resulting in no wasabi-like flavor release. Drying at 45 °C produced more pungent flavor than freeze-drying. Seven other Lepidium species endemic to New Zealand were also analyzed to determine their flavor potential and also whether glucosinolates were taxonomic markers. Six contained mostly gluconapin, but the critically endangered Lepidium banksii had a distinct composition including isopropyl glucosinolate, not detected in the other species.

  13. Investigation of glucosinolate profile and qualitative aspects in sprouts and roots of horseradish (Armoracia rusticana) using LC-ESI-hybrid linear ion trap with Fourier transform ion cyclotron resonance mass spectrometry and infrared multiphoton dissociation.

    Science.gov (United States)

    Agneta, Rosa; Rivelli, Anna Rita; Ventrella, Emanuela; Lelario, Filomena; Sarli, Giulio; Bufo, Sabino Aurelio

    2012-08-01

    Within the family of Brassicaceae, an important source of glucosinolates (GLSs) is represented by horseradish ( Armoracia rusticana P. Gaertner, B. Meyer & Scherbius), cultivated for its roots, which are grated fresh or processed into a sauce and used as a condiment. The characteristic pungent flavor of the root depends on the abundance of the bioactive GLS molecules. In crude plant extracts (sprouts and roots) of an accession of horseradish largely diffused in the Basilicata region (southern Italy), which develops many sprouts and produces white, fiery, and sharp-flavored marketable roots, we characterized the GLS profile by LC-ESI-LTQ-FTICR-MS and IRMPD. In sprouts and roots we identified 16 and 11 GLSs, respectively. We confirmed the presence of sinigrin, 4-hydroxyglucobrassicin, glucobrassicin, gluconasturtin, and 4-methoxyglucobrassicin and identified glucoiberin, gluconapin, glucocochlearin, glucoconringianin, glucosativin, glucoibarin, 5-hydroxyglucobrassicin, glucocapparilinearisin or glucobrassicanapin, glucotropaeolin, and glucoarabishirsutain, not previously characterized in horseradish. Of particular note was the presence of the putative 2-methylsulfonyl-oxo-ethyl-GLS.

  14. Iron interference in arsenic absorption by different plant species, analysed by neutron activation, k{sub 0}-method

    Energy Technology Data Exchange (ETDEWEB)

    Uemura, George; Matos, Ludmila Vieira da Silva; Silva, Maria Aparecida da; Menezes, Maria Angela de Barros Correia [Centro de Desenvolvimento da Tecnologia Nuclear (CDTN-CNEN/MG), Belo Horizonte, MG (Brazil)], e-mail: george@cdtn.br, e-mail: menezes@cdtn.br

    2009-07-01

    Natural arsenic contamination is a cause for concern in many countries of the world including Argentina, Bangladesh, Chile, China, India, Mexico, Thailand, United States of America and also in Brazil, specially in the Iron Quadrangle area, where mining activities have been contributing to aggravate natural contamination. Among other elements, iron is capable to interfere with the arsenic absorption by plants; iron ore has been proposed to remediate areas contaminated by the mentioned metalloid. In order to verify if iron can interfere with arsenic absorption by different taxa of plants, specimens of Brassicacea and Equisetaceae were kept in a 1/4 Murashige and Skoog basal salt solution (M and S), with 10 {mu}gL{sup -1} of arsenic acid. And varying concentrations of iron. The specimens were analysed by neutron activation analysis, k{sub 0}-method, a routine technique in CDTN, and also very appropriate for arsenic studies. The preliminary results were quite surprising, showing that iron can interfere with arsenic absorption by plants, but in different ways, according to the species studied. (author)

  15. Comparison of essential and non-essential element distribution in leaves of the Cd/Zn hyperaccumulator Thlaspi praecox as revealed by micro-PIXE.

    Science.gov (United States)

    Vogel-Mikus, Katarina; Simcic, Jure; Pelicon, Primoz; Budnar, Milos; Kump, Peter; Necemer, Marijan; Mesjasz-Przybyłowicz, Jolanta; Przybyłowicz, Wojciech J; Regvar, Marjana

    2008-10-01

    A detailed localization of elements in leaf tissues of the field-collected Cd/Zn hyperaccumulator Thlaspi praecox (Brassicaceae) growing at a highly metal-polluted site was determined by micro-proton-induced X-ray emission (micro-PIXE) in order to reveal and compare nutrient and non-essential element accumulation patterns in the case of multiple metal accumulation within particular leaf tissues, including the detailed distribution between apoplast and symplast regions. On the larger scans, the highest concentrations of metals were observed in the epidermis, S and Ca in the palisade mesophyll, Cl in the spongy mesophyll and vascular bundles, and P and K in the vascular bundles. On the more detailed scans, the highest Cd, Pb, Cl and K concentrations were observed in vascular bundle collenchyma. The relative element distribution (%) was calculated based on concentrations of elements in particular leaf tissues and their relative weight portions, indicating that most of the accumulated Zn was located in epidermises, while the majority of Cd and Pb was distributed within the mesophyll. Detailed scans of epidermal/mesophyll tissues revealed that Zn was mainly accumulated and detoxified in the symplast of large vacuolated epidermal cells, Cd in the mesophyll symplast, and Pb in the mesophyll symplast and apoplast.

  16. Larval performance of the mustard leaf beetle (Phaedon cochleariae, Coleoptera, Chrysomelidae) on white mustard (Sinapis alba) and watercress (Nasturtium officinale) leaves in dependence of plant exposure to ultraviolet radiation

    Energy Technology Data Exchange (ETDEWEB)

    Reifenrath, Kerstin, E-mail: reifenrath@biozentrum.uni-wuerzburg.d [Universitaet Wuerzburg, Julius-von-Sachs Institut fuer Biowissenschaften, Julius-von-Sachs Platz 3, D-97082 Wuerzburg (Germany); Mueller, Caroline, E-mail: caroline.mueller@uni-bielefeld.d [Universitaet Wuerzburg, Julius-von-Sachs Institut fuer Biowissenschaften, Julius-von-Sachs Platz 3, D-97082 Wuerzburg (Germany)

    2009-07-15

    Short-term exposure to ambient or attenuated ultraviolet (UV) radiation resulted in shifts in plant metabolite concentrations of the Brassicaceae Sinapis alba and Nasturtium officinale. Leaf quality also varied between plant species and within species due to age. Larvae of the oligophagous leaf beetle Phaedon cochleariae were raised on these different host leaves, in order to investigate the effects of variable plant chemistry on this herbivore. The performance of P. cochleariae was influenced by chemical differences between and within plant species but it responded with high plasticity to plants stressed by ultraviolet radiation. Body mass increase and developmental times of larvae were exclusively affected by plant species and leaf-age. However, developmental differences were fully compensated in the pupal stage. We suggest that the plasticity of herbivores may depend on the degree of specialisation, and insect performance may not necessarily be altered by stress-induced host plants. - The larval performance of an oligophagous leaf beetle is influenced by chemical differences between and within plant species but responds with high plasticity to plants stressed by ultraviolet radiation.

  17. Investigation on Weed Species in Alfalfa Field in Qingdao%青岛苜蓿田杂草种类调查研究

    Institute of Scientific and Technical Information of China (English)

    张玉玉; 田净净; 刘志英; 孙娟; 朱华敏; 杨国锋

    2013-01-01

    An investigation on weeds in artificial alfalfa field in Qingdao Animal Husbandry Technology Demonstration Garden was made from the end of March to the end of September in 2012.Twenty-one kinds of weed species (belonging to 12 families) were found.Among them,weeds belonging to Brassicaceae,Convolvulaceae,Asteraceae,Gramineae and Chenopodiaceae were severely harmful.Descuminia Sophia (L.)webb.Ex Prantl,Cirsium setosum (Wild.) MB.and Convolvulus arvensis L.were dominant species in winter-spring.Gramineae weeds,such as Digitaria sanguinalis (L.) Scop.,Setaria viridis (L.) Beauv.and Echinochloa crus-galli (L.) Beauv.,and Humulus scandens (Lour.) Merr.were dominant species in summer-autumn.%2012年自3月底苜蓿返青开始至9月底,对青岛畜牧科技示范园牧草试验基地的苜蓿田杂草调查发现:苜蓿田杂草种类有12科21种,其中十字花科、旋花科、菊科、禾本科和藜科的杂草危害较大;冬春季杂草优势种为麦蒿、刺菜和田旋花;夏秋季杂草优势种为马唐、狗尾草、稗草等禾本科植物和葎草.

  18. The reference genome of the halophytic plant Eutrema salsugineum

    Directory of Open Access Journals (Sweden)

    Ruolin eYang

    2013-03-01

    Full Text Available A halophyte refers to a plant that can naturally tolerate high concentrations of salt in the soil, and its tolerance to salt stress may occur through various evolutionary and molecular mechanisms. Eutrema salsugineum is one of the halophytic species in the Brassicaceae family that can naturally tolerate multiple types of abiotic stresses that typically limit crop productivity, such as extreme salinity and cold. It has been widely used as a laboratorial model for stress biology research in plants. Here, we present the reference genome sequence (241 Mb of E. salsugineum at 8x coverage sequenced by traditional Sanger sequencing-based approach with comparison to its close relative Arabidopsis thaliana. The E. salsugineum genome contains 26,531 protein-coding genes and 51.4% of its genome is composed of repetitive sequences that mostly reside in pericentromeric regions. Comparative analyses of the genome structures, protein-coding genes, microRNAs, stress-related pathways and estimated translation efficiency of proteins between E. salsugineum and A. thaliana suggest adaptation of halophyte to environmental stresses may occur via a global network adjustment of multiple regulatory mechanisms. The E. salsugineum genome provides a resource to identify naturally occurring genetic alterations contributing to the adaptation of the halophyte plants to salinity might be bioengineered in related crop species.

  19. Functional characterization of duplicated Suppressor of Overexpression of Constans 1-like genes in petunia.

    Directory of Open Access Journals (Sweden)

    Jill C Preston

    Full Text Available Flowering time is strictly controlled by a combination of internal and external signals that match seed set with favorable environmental conditions. In the model plant species Arabidopsis thaliana (Brassicaceae, many of the genes underlying development and evolution of flowering have been discovered. However, much remains unknown about how conserved the flowering gene networks are in plants with different growth habits, gene duplication histories, and distributions. Here we functionally characterize three homologs of the flowering gene Suppressor Of Overexpression of Constans 1 (SOC1 in the short-lived perennial Petunia hybrida (petunia, Solanaceae. Similar to A. thaliana soc1 mutants, co-silencing of duplicated petunia SOC1-like genes results in late flowering. This phenotype is most severe when all three SOC1-like genes are silenced. Furthermore, expression levels of the SOC1-like genes Unshaven (UNS and Floral Binding Protein 21 (FBP21, but not FBP28, are positively correlated with developmental age. In contrast to A. thaliana, petunia SOC1-like gene expression did not increase with longer photoperiods, and FBP28 transcripts were actually more abundant under short days. Despite evidence of functional redundancy, differential spatio-temporal expression data suggest that SOC1-like genes might fine-tune petunia flowering in response to photoperiod and developmental stage. This likely resulted from modification of SOC1-like gene regulatory elements following recent duplication, and is a possible mechanism to ensure flowering under both inductive and non-inductive photoperiods.

  20. Extensive chromosome homoeology among Brassiceae species were revealed by comparative genetic mapping with high-density EST-based SNP markers in radish (Raphanus sativus L.).

    Science.gov (United States)

    Li, Feng; Hasegawa, Yoichi; Saito, Masako; Shirasawa, Sachiko; Fukushima, Aki; Ito, Toyoaki; Fujii, Hiroshi; Kishitani, Sachie; Kitashiba, Hiroyasu; Nishio, Takeshi

    2011-10-01

    A linkage map of expressed sequence tag (EST)-based markers in radish (Raphanus sativus L.) was constructed using a low-cost and high-efficiency single-nucleotide polymorphism (SNP) genotyping method named multiplex polymerase chain reaction-mixed probe dot-blot analysis developed in this study. Seven hundred and forty-six SNP markers derived from EST sequences of R. sativus were assigned to nine linkage groups with a total length of 806.7 cM. By BLASTN, 726 markers were found to have homologous genes in Arabidopsis thaliana, and 72 syntenic regions, which have great potential for utilizing genomic information of the model species A. thaliana in basic and applied genetics of R. sativus, were identified. By construction and analysis of the genome structures of R. sativus based on the 24 genomic blocks within the Brassicaceae ancestral karyotype, 23 of the 24 genomic blocks were detected in the genome of R. sativus, and half of them were found to be triplicated. Comparison of the genome structure of R. sativus with those of the A, B, and C genomes of Brassica species and that of Sinapis alba L. revealed extensive chromosome homoeology among Brassiceae species, which would facilitate transfer of the genomic information from one Brassiceae species to another.

  1. Methyl jasmonate affects morphology, number and activity of endoplasmic reticulum bodies in Raphanus sativus root cells.

    Science.gov (United States)

    Gotté, Maxime; Ghosh, Rajgourab; Bernard, Sophie; Nguema-Ona, Eric; Vicré-Gibouin, Maïté; Hara-Nishimura, Ikuko; Driouich, Azeddine

    2015-01-01

    The endoplasmic reticulum (ER) bodies are ER-derived structures that are found in Brassicaceae species and thought to play a role in defense. Here, we have investigated the occurrence, distribution and function of ER bodies in root cells of Raphanus sativus using a combination of microscopic and biochemical methods. We have also assessed the response of ER bodies to methyl jasmonate (MeJA), a phytohormone that mediates plant defense against wounding and pathogens. Our results show that (i) ER bodies do occur in different root cell types from the root cap region to the differentiation zone; (ii) they do accumulate a PYK10-like protein similar to the major marker protein of ER bodies that is involved in defense in Arabidopsis thaliana; and (iii) treatment of root cells with MeJA causes a significant increase in the number of ER bodies and the activity of β-glucosidases. More importantly, MeJA was found to induce the formation of very long ER bodies that results from the fusion of small ones, a phenomenon that has not been reported in any other study so far. These findings demonstrate that MeJA impacts the number and morphology of functional ER bodies and stimulates ER body enzyme activities, probably to participate in defense responses of radish root. They also suggest that these structures may provide a defensive system specific to root cells.

  2. Characterization of RsMYB28 and RsMYB29 transcription factor genes in radish (Raphanus sativus L.).

    Science.gov (United States)

    Luo, X B; Liu, Z; Xu, L; Wang, Y; Zhu, X W; Zhang, W; Chen, W; Zhu, Y L; Su, X J; Everlyne, M; Liu, L W

    2016-09-23

    Glucosinolates (GSLs) are important secondary metabolites in Brassicaceae plants. Previous studies have mainly focused on GSL contents, types, and biosynthesis-related genes, but the molecular characterization patterns of GSL biosynthesis-related transcription factors remain largely unexplored in radish (Raphanus sativus L.). To isolate transcription factor genes regulating the GSL biosynthesis, genomic DNA and cDNA sequences of RsMYB28 and RsMYB29 genes were isolated in radish. Two R2R3-MYB domains were identified in the deduced amino acid sequences. Subcellular localization and yeast-one hybrid assays indicated that both the RsMYB28 and RsMYB29 genes were located in the nucleus and possessed transactivation activity. Reverse transcription quantitative analysis showed that the RsMYB28 and RsMYB29 genes were expressed in seeds, leaves, stems, and roots at the seedling, taproot thickening, and mature stages. Both genes were highly expressed during the seedling and taproot thickening stages. The expression level of RsMYB28 was found to be up-regulated following wounding, glucose, and abscisic acid treatments, whereas RsMYB29 was up-regulated following wounding and methyl jasmonate treatments. These results provide insights into the biological function and characterization of the RsMYB28 and RsMYB29 genes, and facilitate further dissection of the molecular regulatory mechanism underlying the GSL biosynthesis in radish.

  3. Sequencing, de novo assembly and comparative analysis of Raphanus sativus transcriptome.

    Science.gov (United States)

    Wu, Gang; Zhang, Libin; Yin, Yongtai; Wu, Jiangsheng; Yu, Longjiang; Zhou, Yanhong; Li, Maoteng

    2015-01-01

    Raphanus sativus is an important Brassicaceae plant and also an edible vegetable with great economic value. However, currently there is not enough transcriptome information of R. sativus tissues, which impedes further functional genomics research on R. sativus. In this study, RNA-seq technology was employed to characterize the transcriptome of leaf tissues. Approximately 70 million clean pair-end reads were obtained and used for de novo assembly by Trinity program, which generated 68,086 unigenes with an average length of 576 bp. All the unigenes were annotated against GO and KEGG databases. In the meanwhile, we merged leaf sequencing data with existing root sequencing data and obtained better de novo assembly of R. sativus using Oases program. Accordingly, potential simple sequence repeats (SSRs), transcription factors (TFs) and enzyme codes were identified in R. sativus. Additionally, we detected a total of 3563 significantly differentially expressed genes (DEGs, P = 0.05) and tissue-specific biological processes between leaf and root tissues. Furthermore, a TFs-based regulation network was constructed using Cytoscape software. Taken together, these results not only provide a comprehensive genomic resource of R. sativus but also shed light on functional genomic and proteomic research on R. sativus in the future.

  4. Identification of a New Antibacterial Sulfur Compound from Raphanus sativus Seeds

    Science.gov (United States)

    Yazbak, Ahmad; Rushrush, Salwa; Rudy, Amira

    2016-01-01

    Raphanus sativus L. (radish), a member of Brassicaceae, is widely used in traditional medicine in various cultures for treatment of several diseases and disorders associated with microbial infections. The antibacterial activity of the different plant parts has been mainly attributed to several isothiocyanate (ITC) compounds. However, the low correlation between the ITC content and antibacterial activity suggests the involvement of other unknown compounds. The objective of this study was to investigate the antibacterial potential of red radish seeds and identify the active compounds. A crude ethanol seed extract was prepared and its antibacterial activity was tested against five medically important bacteria. The ethanol extract significantly inhibited the growth of all tested strains. However, the inhibitory effect was more pronounced against Streptococcus pyogenes and Escherichia coli. Bioassay-guided fractionation of the ethanol extract followed by HPLC, 1H-NMR, 13C-NMR, 15N-NMR, and HMBC analysis revealed that the active fraction consisted of a single new compound identified as [5-methylsulfinyl-1-(4-methylsulfinyl-but-3-enyl)-pent-4-enylidene]-sulfamic acid, which consisted of two identical sulfur side chains similar to those found in ITCs. The minimal inhibitory concentration values of the isolated compound were in the range of 0.5–1 mg/mL. These results further highlight the role of radish as a rich source of antibacterial compounds. PMID:27781070

  5. Evolutionary conservation of the FLOWERING LOCUS C-mediated vernalization response: evidence from the sugar beet (Beta vulgaris).

    Science.gov (United States)

    Reeves, Patrick A; He, Yuehui; Schmitz, Robert J; Amasino, Richard M; Panella, Lee W; Richards, Christopher M

    2007-05-01

    In many plant species, exposure to a prolonged period of cold during the winter promotes flowering in the spring, a process termed vernalization. In Arabidopsis thaliana, the vernalization requirement of winter-annual ecotypes is caused by the MADS-box gene FLOWERING LOCUS C (FLC), which is a repressor of flowering. During the vernalization process, FLC is downregulated by alteration of its chromatin structure, thereby permitting flowering to occur. In wheat, a vernalization requirement is imposed by a different repressor of flowering, suggesting that some components of the regulatory network controlling the vernalization response differ between monocots and dicots. The extent to which the molecular mechanisms underlying vernalization have been conserved during the diversification of the angiosperms is not well understood. Using phylogenetic analysis, we identified homologs of FLC in species representing the three major eudicot lineages. FLC homologs have not previously been documented outside the plant family Brassicaceae. We show that the sugar beet FLC homolog BvFL1 functions as a repressor of flowering in transgenic Arabidopsis and is downregulated in response to cold in sugar beet. Cold-induced downregulation of an FLC-like floral repressor may be a central feature of the vernalization response in at least half of eudicot species.

  6. Evaluation of 31 potential biofumigant brassicaceous plants as hosts for three meloiodogyne species.

    Science.gov (United States)

    Edwards, Scott; Ploeg, Antoon

    2014-09-01

    Brassicaceous cover crops can be used for biofumigation after soil incorporation of the mowed crop. This strategy can be used to manage root-knot nematodes (Meloidogyne spp.), but the fact that many of these crops are host to root-knot nematodes can result in an undesired nematode population increase during the cultivation of the cover crop. To avoid this, cover crop cultivars that are poor or nonhosts should be selected. In this study, the host status of 31 plants in the family Brassicaceae for the three root-knot nematode species M. incognita, M. javanica, and M. hapla were evaluated, and compared with a susceptible tomato host in repeated greenhouse pot trials. The results showed that M. incognita and M. javanica responded in a similar fashion to the different cover cultivars. Indian mustard (Brassica juncea) and turnip (B. rapa) were generally good hosts, whereas most oil radish cultivars (Raphanus. sativus ssp. oleiferus) were poor hosts. However, some oil radish cultivars were among the best hosts for M. hapla. The arugula (Eruca sativa) cultivar Nemat was a poor host for all three nematode species tested. This study provides important information for chosing a cover crop with the purpose of managing root-knot nematodes.

  7. Intraspecific variation in defense against a generalist lepidopteran herbivore in populations of Eruca sativa (Mill.).

    Science.gov (United States)

    Ogran, Ariel; Landau, Netanel; Hanin, Nir; Levy, Maggie; Gafni, Yedidya; Barazani, Oz

    2016-01-01

    Populations of Eruca sativa (Brassicaceae) from desert and Mediterranean (Med) habitats in Israel differ in their defense against larvae of the generalist Spodoptera littoralis but not the specialist Pieris brassicae. Larvae of the generalist insect feeding on plants of the Med population gained significantly less weight than those feeding on the desert plants, and exogenous application of methyl jasmonate (MJ) on leaves of the Med plants significantly reduced the level of damage created by the generalist larvae. However, MJ treatment significantly induced resistance in plants of the desert population, whereas the generalist larvae caused similar damage to MJ-induced and noninduced plants. Analyses of glucosinolates and expression of genes in their synthesis pathway indicated that defense in plants of the Med population against the generalist insect is governed by the accumulation of glucosinolates. In plants of the desert population, trypsin proteinase inhibitor activity was highly induced in response to herbivory by S. littoralis. Analysis of genes in the defense-regulating signaling pathways suggested that in response to herbivory, differences between populations in the induced levels of jasmonic acid, ethylene, and salicylic acid mediate the differential defenses against the insect. In addition, expression analysis of myrosinase-associated protein NSP2 suggested that in plants of the desert population, glucosinolates breakdown products were primarily directed to nitrile production. We suggest that proteinase inhibitors provide an effective defense in the desert plants, in which glucosinolate production is directed to the less toxic nitriles. The ecological role of nitrile production in preventing infestation by specialists is discussed.

  8. Promotion of testa rupture during garden cress germination involves seed compartment-specific expression and activity of pectin methylesterases.

    Science.gov (United States)

    Scheler, Claudia; Weitbrecht, Karin; Pearce, Simon P; Hampstead, Anthony; Büttner-Mainik, Annette; Lee, Kieran J D; Voegele, Antje; Oracz, Krystyna; Dekkers, Bas J W; Wang, Xiaofeng; Wood, Andrew T A; Bentsink, Leónie; King, John R; Knox, J Paul; Holdsworth, Michael J; Müller, Kerstin; Leubner-Metzger, Gerhard

    2015-01-01

    Pectin methylesterase (PME) controls the methylesterification status of pectins and thereby determines the biophysical properties of plant cell walls, which are important for tissue growth and weakening processes. We demonstrate here that tissue-specific and spatiotemporal alterations in cell wall pectin methylesterification occur during the germination of garden cress (Lepidium sativum). These cell wall changes are associated with characteristic expression patterns of PME genes and resultant enzyme activities in the key seed compartments CAP (micropylar endosperm) and RAD (radicle plus lower hypocotyl). Transcriptome and quantitative real-time reverse transcription-polymerase chain reaction analysis as well as PME enzyme activity measurements of separated seed compartments, including CAP and RAD, revealed distinct phases during germination. These were associated with hormonal and compartment-specific regulation of PME group 1, PME group 2, and PME inhibitor transcript expression and total PME activity. The regulatory patterns indicated a role for PME activity in testa rupture (TR). Consistent with a role for cell wall pectin methylesterification in TR, treatment of seeds with PME resulted in enhanced testa permeability and promoted TR. Mathematical modeling of transcript expression changes in germinating garden cress and Arabidopsis (Arabidopsis thaliana) seeds suggested that group 2 PMEs make a major contribution to the overall PME activity rather than acting as PME inhibitors. It is concluded that regulated changes in the degree of pectin methylesterification through CAP- and RAD-specific PME and PME inhibitor expression play a crucial role during Brassicaceae seed germination.

  9. Oilseed Meal Effects on the Emergence and Survival of Crop and Weed Species

    Directory of Open Access Journals (Sweden)

    Katie L. Rothlisberger

    2012-01-01

    Full Text Available Oilseed crops are being widely evaluated for potential biodiesel production. Seed meal (SM remaining after extracting oil may have use as bioherbicides or organic fertilizers. Brassicaceae SM often contains glucosinolates that hydrolyze into biologically active compounds that may inhibit various pests. Jatropha curcas SM contains curcin, a phytoxin. A 14-day greenhouse study determined that Sinapis alba (white mustard, Brassica juncea (Indian mustard, Camelina sativa, and Jatropha curcas applied to soil at varying application rates [0, 0.5, 1.0, and 2.5% (w/w] and incubation times (1, 7, and 14 d prior to planting affected seed emergence and seedling survival of cotton [Gossypium hirsutum (L.], sorghum [Sorghum bicolor (L. Moench], johnsongrass (Sorghum halepense, and redroot pigweed (Amaranthus retroflexus. With each species, emergence and survival was most decreased by 2.5% SM application applied at 1 and 7 d incubations. White mustard SM incubated for 1 d applied at low and high rates had similar negative effects on johnsongrass seedlings. Redroot pigweed seedling survival was generally most decreased by all 2.5% SM applications. Based on significant effects determined by ANOVA, results suggested that the type, rate, and timing of SM application should be considered before land-applying SMs in cropping systems.

  10. Digitizing information for wider reach through 'him-Padap-Sanklan', an e-inventory of Himalayan flora

    Directory of Open Access Journals (Sweden)

    Amit Kumar

    2014-09-01

    Full Text Available 'him-Padap-Sankalan' is a digital directory of floral resources of Himachal Pradesh H.P., a biologically rich state of the Himalayan Biodiversity hotspot. It provides information on nomenclature, taxonomic classification, local name(s, trade name(s and uses of 3348 plant species along with maps showing their distribution in H.P. The information housed in 'Him-Padap-Sankalan' has been compiled from published sources, primarily the Flora of Himachal Pradesh: Analysis. The Graphic User Interface of the 'him-Padap-Sankalan' has been prepared using ASP.Net having MS-Access database in the back end. The 'scientific names', 'trade names', 'local names', 'synonyms', 'genus' and 'species' are the various search modules of 'him-Padap-Sankalan', which can be accessed using an internet browser connected through local area network. Analysis of information reveals that of the 201 families, Poaceae, Asteraceae, Papilionaceae, Scrophularariaceae, Rosaceae, Cyperaceae, Lamiaceae, Ranunculaceae, Brassicaceae and Apiaceae are the ten dominat families in the state. 24 families and 18 genera are common to all the 12 districts of H.P. The maximum number of families, genera and species are in Shimla district and the least in Bilaspur district of H.P.

  11. Urban ecological characteristics and vascular wall flora on the Anatolian side of Istanbul, Turkey

    Directory of Open Access Journals (Sweden)

    Volkan Altay

    2010-11-01

    Full Text Available The aim of this study is to specify the urban ecologic characteristics of Istanbul and to show their reflection to the vascular wall flora of the Anatolian side, which is a distinctive wall habitat. Plants samples of the urban habitat were collected from the top and vertical surfaces of walls during 2005-2007. A total of 101 taxa (81 species, 13 subspecies and 7 varieties belonging to 74 genera and 33 families were recorded. It was determined that 80 species were Dicotyledones while 1 was Monocotyledone. The families with the largest number of taxa were Asteraceae (18 species, 22.22%, Poaceae (8 species, 9.87%, Lamiaceae and Brassicaceae (5 species, 6.17%, and Polygonaceae and Scrophulariaceae (4 species, 4.93%. The most common plant species on walls were Parietaria judaica L. (Urticaceae, Stellaria media (L. Vill. subsp. media (Caryophyllaceae, and Mercurialis annua L. (Euphorbiaceae. The percentage of phytogeographical elements among the recorded taxa varied as follows: Euro-Siberian (6 taxa, 7.41%, Mediterranean (11 taxa, 13.58%, E. Mediterranian (2 taxa, 2.47%, Irano-Turanian (1 taxon, 1.23% and unknown (61 taxa, 75.31%. It was found that 6 taxa (7.41% were cosmopolitan, 12 (14.82% were widespread while 1 (1.23% was endemic. The results were compared with some other European wall floras and some similarities and dissimilarities were noted.

  12. 巴基斯坦哈博伊草原植物的生态特征%Ecological Characteristics of Plants of Harboi Rangeland, Kalat, Pakistan

    Institute of Scientific and Technical Information of China (English)

    Mufakhirah Jan DURRANI; Farrukh HUSSAIN; Saeed-ur-Rehman

    2005-01-01

    The floristic composition ecological characteristics and ethnoecology of plants of Harboi rangeland (Kalat,Pakistan) were done during 1997 to 1999. There were 202 species that belonged to 45 plant families. Asteraceae, Papilionaceae,Poaceae, Brassicaceae and Lamiaceae were the leading families. Juniperus macropoda was the only tree species while Artemesia maritima, Sophora griffithii, Hertia intermedia, Nepeta juncea, Perovskia abrotanoides, Convolvulus leiocalycinus and Astragalus spp. were the most common shrubs. The dominant life forms were therophyte and hemicryptophyte while nanophylls, microphylls and leptophylls were dominant leaf sizes. The growing season lasts from March to November with two flowering periods. Most, i.e. 83.6% plants flowered during April to June while 63.3% plants bloomed during July to September. Some 145 species had various local uses. They included 129 fodder species, 50 medicinal species, 12 vegetable/fruits species, 7 fuel wood species, 3 species each were used for roof thatching and making herbal tea. Deforestation, over grazing and over collection of medicinal and fuel wood species have led to the degradation of this rangeland. There is need to conserve these resources with the participation of local communities.

  13. Flora, life form and chorology of plants of the Helali protected area in Khorasan-e Razavi province

    Directory of Open Access Journals (Sweden)

    Fatemeh Sokhanvar

    2013-11-01

    Full Text Available “Helali protected area” has been officially announced as a no-hunting zone since 1997 and then, became a protected area in 2006. This area with ca. 63495 hectares, is located in the west of Gonabad and southeast of Bajestan, Khorasan-e Razavi province. The area includes mountains, plains and foothills and has a dry and desert climate with warm summers and cold winters based on De Martonne’s aridity index. In investigation of the flora, 318 vascular plant species belonging to 205 genera and 53 families were identified. The most dominant families were Asteraceae, Poaceae, and Brassicaceae with 53, 30, and 26 plant species, respectively. Chorological classification of the flora showed that the majority of the species (56.3% belonged to the Irano-Turanian region. Pluri-regional, cosmopolitan and sub-cosmopolitan elements made up 14.1% of the flora which reflected a disturbance history in the area. Therophytes (47.5% and hemicryptophytes (26.1% were the most important life forms according to Raunkiaer classification.

  14. Parallel evolution of glucosinolate biosynthesis inferred from congruent nuclear and plastid gene phylogenies.

    Science.gov (United States)

    Rodman, J; Soltis, P; Soltis, D; Sytsma, K; Karol, K

    1998-07-01

    The phytochemical system of mustard-oil glucosides (glucosinolates) accompanied by the hydrolytic enzyme myrosinase (beta-thioglucosidase), the latter usually compartmented in special myrosin cells, characterizes plants in 16 families of angiosperms. Traditional classifications place these taxa in many separate orders and thus imply multiple convergences in the origin of this chemical defense system. DNA sequencing of the chloroplast rbcL gene for representatives of all 16 families and several putative relatives, with phylogenetic analyses by parsimony and maximum likelihood methods, demonstrated instead a single major clade of mustard-oil plants and one phylogenetic outlier. In a further independent test, DNA sequencing of the nuclear 18S ribosomal RNA gene for all these exemplars has yielded the same result, a major mustard-oil clade of 15 families (Akaniaceae, Bataceae, Brassicaceae, Bretschneideraceae, Capparaceae, Caricaceae, Gyrostemonaceae, Koeberliniaceae, Limnanthaceae, Moringaceae, Pentadiplandraceae, Resedaceae, Salvadoraceae, Tovariaceae, and Tropaeolaceae) and one outlier, the genus Drypetes, traditionally placed in Euphorbiaceae. Concatenating the two gene sequences (for a total of 3254 nucleotides) in a data set for 33 taxa, we obtain robust support for this finding of parallel origins of glucosinolate biosynthesis. From likely cyanogenic ancestors, the "mustard oil bomb" was invented twice.

  15. An overview on neuroprotective effects of isothiocyanates for the treatment of neurodegenerative diseases.

    Science.gov (United States)

    Giacoppo, Sabrina; Galuppo, Maria; Montaut, Sabine; Iori, Renato; Rollin, Patrick; Bramanti, Placido; Mazzon, Emanuela

    2015-10-01

    The discovery of new natural compounds with pharmacological properties is a field of interest widely growing, especially for the management of neurodegenerative diseases. As no pharmacological treatment is available to prevent the development of these disorders, dietary intake of foods or plant-based extracts with antioxidant properties might have beneficial effects on human health and improve brain functions. Isothiocyanates (ITCs), derived from the hydrolysis of the corresponding glucosinolates (GLs), mainly found in Brassica vegetables (Brassicaceae) and, to a lesser extent, in Moringaceae plants, have demonstrated to exert neuroprotective properties. Specifically, strong evidences suggest that antioxidant effects may be ascribed mainly to their peculiar ability to activate the Nrf2/ARE pathway, but alternative mechanisms of action have also been suggested. This review summarizes the current knowledge about the neuroprotective effects of ITCs in counteracting oxidative stress as well as inflammatory and apoptotic mechanisms, using in vitro and in vivo models of acute and chronic neurodegenerative disease. Therefore, ITCs could be regarded as a promising source of alternative medicine for the prevention and/or treatment of neurodegenerative diseases.

  16. Insecticide resistance in populations of the diamondback moth, Plutella xylostella (L.) (Lepidoptera: Plutellidae), from the state of Pernambuco, Brazil.

    Science.gov (United States)

    Santos, V C; de Siqueira, H A A; da Silva, J E; de Farias, M J D C

    2011-01-01

    The diamondback moth Plutella xylostella (L.) has a great economic importance in Brassicaceae crops in many parts of the world. Recurrent infestations of this pest in growing areas of Pernambuco state, Brazil, have led farmers to frequently spray their crops with insecticides. However, control failures by several insecticides have been alleged by farmers. The objective of this study was to check whether resistance to insecticides could explain these control failures in P. xylostella. Populations of P. xylostella from Pernambuco were collected between January and April 2009. The resistance ratios of P. xylostella populations were compared among five different active ingredients: abamectin, methomyl, lufenuron, indoxacarb, and diafenthiuron by leaf dipping bioassays using foliar discs of kale leaves. Mortality data were submitted to probit analysis. The P. xylostella populations showed variable response and significant resistance to one or more insecticides. The population from Bezerros County exhibited the highest resistance ratios to indoxacarb (25.3 times), abamectin (61.7 times), and lufenuron (705.2 times), when compared to the reference population. The populations from Bonito and Jupi Counties were 33.0 and 12.0 times more resistant to lufenuron and abamectin, respectively, when compared with the reference population. Resistance to methomyl was the least common, but not less important, in at least four populations. These results indicated that control failures were associated with resistance by some of the evaluated insecticides, reinforcing the need for resistance management in areas of the state of Pernambuco.

  17. Uptake of radionuclides by a common reed (Phragmites australis (Cav.) Trin. ex Steud.) grown in the vicinity of the former uranium mine at Zirovski vrh

    Energy Technology Data Exchange (ETDEWEB)

    Cerne, Marko, E-mail: marko.cerne@ijs.s [Jozef Stefan Institute, Jamova cesta 39, SI-1000 Ljubljana (Slovenia); Smodis, Borut, E-mail: borut.smodis@ijs.s [Jozef Stefan Institute, Jamova cesta 39, SI-1000 Ljubljana (Slovenia); Strok, Marko, E-mail: marko.strok@ijs.s [Jozef Stefan Institute, Jamova cesta 39, SI-1000 Ljubljana (Slovenia)

    2011-04-15

    From uranium mining areas, in particular, the radionuclides are usually discharged to the environment during the mining and milling process. At the former uranium mine Zirovski vrh, Slovenia, mine waste and mill tailings were deposited at the Jazbec site and the Borst site, respectively. Plants grown in soils contaminated with the seepage waters from tailings may represent radiological concern if radionuclides from the uranium decay chain are transferred into the food chain. Uranium is usually accumulated in the roots and translocated to the shoots in limited amounts. Uranium plant accumulators are usually plants from Brassicaceae and Poaceae families. A common reed (Phragmites australis (Cav.) Trin. ex Steud.), a tall perennial grass, growing in a wetland habitats, accumulates metals in the above-ground parts. It may be used for phytoremediation of uranium-contaminated soils, because of high biomass production and high metal-accumulation potential. Preliminary results of radionuclide contents measured in such plants, growing on the deposit tailings are presented. A common reed, that was grown on the Borst tailings pile accumulated 8.6 {+-} 8 mBq/g dry weight (d.w.) and 2.4 {+-} 2 mBq/g dry weight (d.w.) of {sup 238}U in leaves and stems, respectively. In the paper, activity concentrations of other nuclides, i.e. {sup 226}Ra, {sup 210}Pb and {sup 40}K are also shown and discussed.

  18. Peroxidases identified in a subtractive cDNA library approach show tissue-specific transcript abundance and enzyme activity during seed germination of Lepidium sativum.

    Science.gov (United States)

    Linkies, Ada; Schuster-Sherpa, Uta; Tintelnot, Stefanie; Leubner-Metzger, Gerhard; Müller, Kerstin

    2010-01-01

    The micropylar endosperm is a major regulator of seed germination in endospermic species, to which the close Brassicaceae relatives Arabidopsis thaliana and Lepidium sativum (cress) belong. Cress seeds are about 20 times larger than the seeds of Arabidopsis. This advantage was used to construct a tissue-specific subtractive cDNA library of transcripts that are up-regulated late in the germination process specifically in the micropylar endosperm of cress seeds. The library showed that a number of transcripts known to be up-regulated late during germination are up-regulated in the micropylar endosperm cap. Detailed germination kinetics of SALK lines carrying insertions in genes present in our library showed that the identified transcripts do indeed play roles during germination. Three peroxidases were present in the library. These peroxidases were identified as orthologues of Arabidopsis AtAPX01, AtPrx16, and AtPrxIIE. The corresponding SALK lines displayed significant germination phenotypes. Their transcripts were quantified in specific cress seed tissues during germination in the presence and absence of ABA and they were found to be regulated in a tissue-specific manner. Peroxidase activity, and particularly its regulation by ABA, also differed between radicles and micropylar endosperm caps. Possible implications of this tissue-specificity are discussed.

  19. Demographic population structure and fungal associations of plants colonizing High Arctic glacier forelands, Petuniabukta, Svalbard

    Directory of Open Access Journals (Sweden)

    Jakub Těšitel

    2014-04-01

    Full Text Available The development of vegetation in Arctic glacier forelands has been described as unidirectional, non-replacement succession characterized by the gradual establishment of species typical for mature tundra with no species turnover. Our study focused on two early colonizers of High Arctic glacier forelands: Saxifraga oppositifolia (Saxifragaceae and Braya purpurascens (Brassicaceae. While the first species is a common generalist also found in mature old growth tundra communities, the second specializes on disturbed substrate. The demographic population structures of the two study species were investigated along four glacier forelands in Petuniabukta, north Billefjorden, in central Spitsbergen, Svalbard. Young plants of both species occurred exclusively on young substrate, implying that soil conditions are favourable for establishment only before soil crusts develop. We show that while S. oppositifolia persists from pioneer successional stages and is characterized by increased size and flowering, B. purpurascens specializes on disturbed young substrate and does not follow the typical unidirectional, non-replacement succession pattern. Plants at two of the forelands were examined for the presence of root-associated fungi. Fungal genus Olpidium (Fungus incertae sedis was found along a whole successional gradient in one of the forelands.

  20. Glucoraphanin, the bioprecursor of the widely extolled chemopreventive agent sulforaphane found in broccoli, induces Phase-I xenobiotic metabolizing enzymes and increases free radical generation in rat liver

    Energy Technology Data Exchange (ETDEWEB)

    Perocco, Paolo [Department of Experimental Pathology, Cancerology Section, viale Filopanti 22, I-40126, University of Bologna, Bologna (Italy); Bronzetti, Giorgio [Institute of Biology and Agricultural Biotechnology - CNR Research Area, via Moruzzi, I-56124 Pisa (Italy); Canistro, Donatella; Sapone, Andrea; Affatato, Alessandra; Pozzetti, Laura; Broccoli, Massimiliano [Department of Pharmacology, Molecular Toxicology Unit, via Irnerio 48, I-40126, University of Bologna, Bologna (Italy); Valgimigli, Luca [Department of Organic Chemistry ' A. Mangini' , Viale Risorgimento 4, I-40127, Alma-Mater Studiorum, University of Bologna, Bologna (Italy); Pedulli, Gian Franco [Department of Organic Chemistry ' A. Mangini' , Viale Risorgimento 4, I-40127, Alma-Mater Studiorum, University of Bologna, Bologna (Italy); Iori, Renato [C.R.A - Research Institute for Industrial Crops, via di Corticella 133, I-40129 Bologna (Italy); Barillari, Jessica [Institute of Biology and Agricultural Biotechnology - CNR Research Area, via Moruzzi, I-56124 Pisa (Italy)]|[C.R.A - Research Institute for Industrial Crops, via di Corticella 133, I-40129 Bologna (Italy); Sblendorio, Valeriana [Department of Pharmacology, Molecular Toxicology Unit, via Irnerio 48, I-40126, University of Bologna, Bologna (Italy); Legator, Marvin S. [Department of Preventive Medicine and Community Health, Division of Environmental Toxicology, The University of Texas Medical Branch at Galveston, 700 Harborside Drive, Galveston, TX 77555-1110 (United States); Paolini, Moreno [Department of Pharmacology, Molecular Toxicology Unit, via Irnerio 48, I-40126, University of Bologna, Bologna (Italy); Abdel-Rahman, Sherif Z. [Department of Preventive Medicine and Community Health, Division of Environmental Toxicology, The University of Texas Medical Branch at Galveston, 700 Harborside Drive, Galveston, TX 77555-1110 (United States)]. E-mail: sabdelra@utmb.edu

    2006-03-20

    Epidemiological and animal studies linking high fruit and vegetable consumption to lower cancer risk have strengthened the belief that long-term administration of isolated naturally occurring dietary constituents could reduce the risk of cancer. In recent years, metabolites derived from phytoalexins, such as glucoraphanin found in broccoli and other cruciferous vegetables (Brassicaceae), have gained much attention as potential cancer chemopreventive agents. The protective effect of these micronutrients is assumed to be due to the inhibition of Phase-I carcinogen-bioactivating enzymes and/or induction of Phase-II detoxifying enzymes, an assumption that still remains uncertain. The protective effect of glucoraphanin is thought to be due to sulforaphane, an isothiocyanate metabolite produced from glucoraphanin by myrosinase. Here we show, in rat liver, that while glucoraphanin slightly induces Phase-II enzymes, it powerfully boosts Phase-I enzymes, including activators of polycyclic aromatic hydrocarbons (PAHs), nitrosamines and olefins. Induction of the cytochrome P450 (CYP) isoforms CYP1A1/2, CYP3A1/2 and CYP2E1 was confirmed by Western immunoblotting. CYP induction was paralleled by an increase in the corresponding mRNA levels. Concomitant with this Phase-I induction, we also found that glucoraphanin generated large amount of various reactive radical species, as determined by electron paramagnetic resonance (EPR) spectrometry coupled to a radical-probe technique. This suggests that long-term uncontrolled administration of glucoraphanin could actually pose a potential health hazard.

  1. Transcriptome Changes in Hirschfeldia incana in Response to Lead Exposure.

    Science.gov (United States)

    Auguy, Florence; Fahr, Mouna; Moulin, Patricia; El Mzibri, Mohamed; Smouni, Abdelaziz; Filali-Maltouf, Abdelkarim; Béna, Gilles; Doumas, Patrick

    2015-01-01

    Hirschfeldia incana, a pseudometallophyte belonging to the Brassicaceae family and widespread in the Mediterranean region, was selected for its ability to grow on soils contaminated by lead (Pb). The global comparison of gene expression using microarrays between a plant susceptible to Pb (Arabidopsis thaliana) and a Pb tolerant plant (H. incana) enabled the identification of a set of specific genes expressed in response to lead exposure. Three groups of genes were particularly over-represented by the Pb exposure in the biological processes categorized as photosynthesis, cell wall, and metal handling. Each of these gene groups was shown to be directly involved in tolerance or in protection mechanisms to the phytotoxicity associated with Pb. Among these genes, we demonstrated that MT2b, a metallothionein gene, was involved in lead accumulation, confirming the important role of metallothioneins in the accumulation and the distribution of Pb in leaves. On the other hand, several genes involved in biosynthesis of ABA were shown to be up-regulated in the roots and shoots of H. incana treated with Pb, suggesting that ABA-mediated signaling is a possible mechanism in response to Pb treatment in H. incana. This latest finding is an important research direction for future studies.

  2. Transcriptome changes in Hirschfeldia incana in response to lead exposure

    Directory of Open Access Journals (Sweden)

    Florence eAuguy

    2016-01-01

    Full Text Available Hirschfeldia incana, a pseudometallophyte belonging to the Brassicaceae family and widespread in the Mediterranean region, was selected for its ability to grow on soils contaminated by lead (Pb .The global comparison of gene expression using microarrays between a plant susceptible to Pb (Arabidopsis thaliana and a Pb tolerant plant (Hirschfeldia incana enabled the identification of a set of specific genes expressed in response to lead exposure. Three groups of genes were particularly over-represented by the Pb exposure in the biological processes categorized as photosynthesis, cell wall and metal handling. Each of these gene groups was shown to be directly involved in tolerance or in protection mechanisms to the phytotoxicity associated with Pb. Among these genes, we demonstrated that MT2b, a metallothionein gene, was involved in lead accumulation, confirming the important role of metallothioneins in the accumulation and the distribution of Pb in leaves. On the other hand, several genes involved in biosynthesis of ABA were shown to be up-regulated in the roots and shoots of H. incana treated with Pb, suggesting that ABA-mediated signaling is a possible mechanism in response to Pb treatment in H. incana. This latest finding is an important research direction for future studies.

  3. Dedicated Industrial Oilseed Crops as Metabolic Engineering Platforms for Sustainable Industrial Feedstock Production.

    Science.gov (United States)

    Zhu, Li-Hua; Krens, Frans; Smith, Mark A; Li, Xueyuan; Qi, Weicong; van Loo, Eibertus N; Iven, Tim; Feussner, Ivo; Nazarenus, Tara J; Huai, Dongxin; Taylor, David C; Zhou, Xue-Rong; Green, Allan G; Shockey, Jay; Klasson, K Thomas; Mullen, Robert T; Huang, Bangquan; Dyer, John M; Cahoon, Edgar B

    2016-02-26

    Feedstocks for industrial applications ranging from polymers to lubricants are largely derived from petroleum, a non-renewable resource. Vegetable oils with fatty acid structures and storage forms tailored for specific industrial uses offer renewable and potentially sustainable sources of petrochemical-type functionalities. A wide array of industrial vegetable oils can be generated through biotechnology, but will likely require non-commodity oilseed platforms dedicated to specialty oil production for commercial acceptance. Here we show the feasibility of three Brassicaceae oilseeds crambe, camelina, and carinata, none of which are widely cultivated for food use, as hosts for complex metabolic engineering of wax esters for lubricant applications. Lines producing wax esters >20% of total seed oil were generated for each crop and further improved for high temperature oxidative stability by down-regulation of fatty acid polyunsaturation. Field cultivation of optimized wax ester-producing crambe demonstrated commercial utility of these engineered crops and a path for sustainable production of other industrial oils in dedicated specialty oilseeds.

  4. Airborne pollen assemblages and weather regime in the central-eastern Loess Plateau, China

    Science.gov (United States)

    Li, Yuecong; Ge, Yawen; Xu, Qinghai; Bunting, Jane M.; Lv, Suqing; Wang, Junting; Li, Zetao

    2015-04-01

    This paper presents the results of pollen trapping studies designed to quantify the pollen assemblages carried in the winds of the Loess Plateau in Luochuan and Hunyuan. The one-year-collection samples analysis results show that pollen assemblages can be more sensitive to the change of climate than the vegetation composition, because of the change of pollen production. The analysis results of pollen traps in different weather regimes indicate that the pollen influx coming from dust weather contribute more to the total pollen influx than that coming from non-dust weather. The wind speed is the most important influenced factor to pollen assemblages, then the mean temperature and the mean relative humidity, the wind direction also contributes some. Strong wind coming from dust direction can make the percent and influx of Artemisia and Chenopodiaceae increase obviously with averagely higher than over 2.7 times in dust weather than in non-dust samples. The influences of wind speed and wind direction are not serious to some arboreal pollen such as Rosaceae, Quercus, Betula, Pinus and Ostryopsis, which are mainly influenced by temperature or the relative humidity such as Salix, Hippophae, Carpinus, Brassicaceae, Cupressaceae, Fabaceae.

  5. Pollen analysis of natural honeys from the central region of Shanxi, North China.

    Directory of Open Access Journals (Sweden)

    Xiao-Yan Song

    Full Text Available Based on qualitative and quantitative melissopalynological analyses, 19 Chinese honeys were classified by botanical origin to determine their floral sources. The honey samples were collected during 2010-2011 from the central region of Shanxi Province, North China. A diverse spectrum of 61 pollen types from 37 families was identified. Fourteen samples were classified as unifloral, whereas the remaining samples were multifloral. Bee-favoured families (occurring in more than 50% of the samples included Caprifoliaceae (found in 10 samples, Laminaceae (10, Brassicaceae (12, Rosaceae (12, Moraceae (13, Rhamnaceae (15, Asteraceae (17, and Fabaceae (19. In the unifloral honeys, the predominant pollen types were Ziziphus jujuba (in 5 samples, Robinia pseudoacacia (3, Vitex negundo var. heterophylla (2, Sophora japonica (1, Ailanthus altissima (1, Asteraceae type (1, and Fabaceae type (1. The absolute pollen count (i.e., the number of pollen grains per 10 g honey sample suggested that 13 samples belonged to Group I (<20,000 pollen grains, 4 to Group II (20,000-100,000, and 2 to Group III (100,000-500,000. The dominance of unifloral honeys without toxic pollen grains and the low value of the HDE/P ratio (i.e., honey dew elements/pollen grains from nectariferous plants indicated that the honey samples are of good quality and suitable for human consumption.

  6. Complete mitochondrial genome sequence of black mustard (Brassica nigra; BB) and comparison with Brassica oleracea (CC) and Brassica carinata (BBCC).

    Science.gov (United States)

    Yamagishi, Hiroshi; Tanaka, Yoshiyuki; Terachi, Toru

    2014-11-01

    Crop species of Brassica (Brassicaceae) consist of three monogenomic species and three amphidiploid species resulting from interspecific hybridizations among them. Until now, mitochondrial genome sequences were available for only five of these species. We sequenced the mitochondrial genome of the sixth species, Brassica nigra (nuclear genome constitution BB), and compared it with those of Brassica oleracea (CC) and Brassica carinata (BBCC). The genome was assembled into a 232 145 bp circular sequence that is slightly larger than that of B. oleracea (219 952 bp). The genome of B. nigra contained 33 protein-coding genes, 3 rRNA genes, and 17 tRNA genes. The cox2-2 gene present in B. oleracea was absent in B. nigra. Although the nucleotide sequences of 52 genes were identical between B. nigra and B. carinata, the second exon of rps3 showed differences including an insertion/deletion (indel) and nucleotide substitutions. A PCR test to detect the indel revealed intraspecific variation in rps3, and in one line of B. nigra it amplified a DNA fragment of the size expected for B. carinata. In addition, the B. carinata lines tested here produced DNA fragments of the size expected for B. nigra. The results indicate that at least two mitotypes of B. nigra were present in the maternal parents of B. carinata.

  7. Biotechnological applications in in vitro plant regeneration studies of broccoli (Brassica oleracea L. var. italica), an important vegetable crop.

    Science.gov (United States)

    Kumar, Pankaj; Srivastava, Dinesh Kumar

    2016-04-01

    Biotechnology holds promise for genetic improvement of important vegetable crops. Broccoli (Brassica oleracea L. var. italica) is an important vegetable crop of the family Brassicaceae. However, various biotic and abiotic stresses cause enormous crop yield losses during commercial cultivation of broccoli. Establishment of a reliable, reproducible and efficient in vitro plant regeneration system with cell and tissue culture is a vital prerequisite for biotechnological application of crop improvement programme. An in vitro plant regeneration technique refers to culturing, cell division, cell multiplication, de-differentiation and differentiation of cells, protoplasts, tissues and organs on defined liquid/solid medium under aseptic and controlled environment. Recent progress in the field of plant tissue culture has made this area one of the most dynamic and promising in experimental biology. There are many published reports on in vitro plant regeneration studies in broccoli including direct organogenesis, indirect organogenesis and somatic embryogenesis. This review summarizes those plant regeneration studies in broccoli that could be helpful in drawing the attention of the researchers and scientists to work on it to produce healthy, biotic and abiotic stress resistant plant material and to carry out genetic transformation studies for the production of transgenic plants.

  8. Regulation of ferulate-5-hydroxylase expression in Arabidopsis in the context of sinapate ester biosynthesis

    Energy Technology Data Exchange (ETDEWEB)

    Ruegger, M.; Meyer, K.; Cusumano, J.C.; Chapple, C. [Purdue Univ., West Lafayette, IN (United States). Dept. of Biochemistry

    1999-01-01

    Sinapic acid is an intermediate in syringyl lignin biosynthesis in angiosperms, and in some taxa serves as a precursor for soluble secondary metabolites. The biosynthesis and accumulation of the sinapate esters sinapoylglucose, sinapolymalate, and sinapolycholine are developmentally regulated in Arabidopsis and other members of the Brassicaceae. The FAH1 locus of Arabidopsis encodes the enzyme ferulate-5-hydroxylase (F5H), which catalyzes the rate-limiting step in syringyl lignin biosynthesis and is required for the production of sinapate esters. Here the authors show that F5H expression parallels sinapate ester accumulation in developing siliques and seedlings, but is not rate limiting for their biosynthesis. RNA gel-blot analysis indicated that the tissue-specific and developmentally regulated expression of F5H mRNA is distinct from that of other phenylpropanoid genes. Efforts to identify constructs capable of complementing the sinapate ester-deficient phenotype of fah1 mutants demonstrated that F5H expression in leaves is dependent on sequences 3{prime} of the F5H coding region. In contrast, the positive regulatory function of the downstream region is not required for F5H transcript or sinapolycholine accumulation in embryos.

  9. Identification of As accumulation plant species growing on highly contaminated soils.

    Science.gov (United States)

    Gisbert, Carmina; Almela, Concepción; Vélez, Dinoraz; López-Moya, J Rafael; de Haro, Antonio; Serrano, Ramón; Montoro, Rosa; Navarro-Aviñó, Juan

    2008-01-01

    Soils from the alluvial flats of the Turia River, Valencia, Spain, which were highly contaminated by decades of industrial activity, were surveyed for native plant species that could be candidates useful in phytoremediation. Concentrations of heavy metals and arsenic (As) in soils reached 25,000 mg Kg(-1) Pb, 12,000 mg Kg(-1) Zn, 70 mg Kg(-1) Cd, and 13500 mg Kg(-1) As. The predominant vegetation was collected and species identified. Soil samples and the corresponding plant shoots were analyzed to determine the amount of As accumulated by the various plant species. Several were able to tolerate more than 1000 mg Kg(-1) As in the soil. Bassia scoparia (Chenopodiaceae) survive in soil with 8375 mg Kg(-1) As. Arsenic accumulation in shoots of the various plant species investigated ranged from 0.1 to 107 mg Kg(-1) dw. Bassia scoparia (Chenopodiaceae), Inula viscosa (Asteraceae), Solanum nigrum (Solanaceae), and Hirschfeldia incana (Brassicaceae) had the highest values for As accumulation.

  10. Fungi Mikoriza Arbuskula: Potensi teknologi mikorizoremediasi logam berat dalam rehabilitasi lahan tambang

    Directory of Open Access Journals (Sweden)

    SUHARNO

    2016-01-01

    Full Text Available Suharno, Sancayaningsih RP. 2013. Arbuscular Mycorrhizae Fungi: The potential use of heavy metal mycorrhizo-remediation technology in mined field rehabilitation. Bioteknologi 10: 23-34. The study of arbuscular mycorrhizae fungi (AMF on several ecosystem varieties has been done worldwide throughout. The role of mycorrhizae in promoting growth and surviving of plants in some critical habitats has also been recognized. In the last decade the ability of mycorrhizae has been used as a heavy metal remediation in the mined field. In fact, mycorrhizae were able to support the growth and survival of plants on the marginal lands. Various species of AMF are able to build symbioses relationship with plants in order to stabilize and bind heavy metals in polluted lands. Previously, Brassicaceae and Carryophylaceae plants known as heavy metal hyper-accumulator, also Leguminosae plants with nitrogen fixing bacteria in it have been used in waste mined land revegetation and reclamation. Nowadays, beside increasing those plants ability, mycorrhizal fungi become an alternative source to enhance and develop other plant varieties to be plant revegetation in mined field.

  11. Colonisation of a Zn, Cd and Pb hyperaccumulator Thlaspi praecox Wulfen with indigenous arbuscular mycorrhizal fungal mixture induces changes in heavy metal and nutrient uptake

    Energy Technology Data Exchange (ETDEWEB)

    Vogel-Mikus, Katarina [Department of Biology, Biotechnical Faculty, University of Ljubljana, Vecna pot 111, SI-1000 Ljubljana (Slovenia); Pongrac, Paula [Department of Biology, Biotechnical Faculty, University of Ljubljana, Vecna pot 111, SI-1000 Ljubljana (Slovenia); Kump, Peter [Jozef Stefan Institute, Jamova 39, SI-1000 Ljubljana (Slovenia); Necemer, Marijan [Jozef Stefan Institute, Jamova 39, SI-1000 Ljubljana (Slovenia); Regvar, Marjana [Department of Biology, Biotechnical Faculty, University of Ljubljana, Vecna pot 111, SI-1000 Ljubljana (Slovenia)]. E-mail: marjana.regvar@bf.uni-lj.si

    2006-01-15

    Plants of the Zn, Cd and Pb hyperaccumulator Thlaspi praecox Wulfen (Brassicaceae) inoculated or not with indigenous arbuscular mycorrhizal (AM) fungal mixture were grown in a highly Cd, Zn and Pb contaminated substrate in order to evaluate the functionality of symbiosis and assess the possible impact of AM colonisation on heavy metal uptake and tolerance. The results suggest AM development in the metal hyperaccumulating T. praecox is favoured at elevated nutrient demands, e.g. during the reproductive period. AM colonisation parameters positively correlated with total soil Cd and Pb. Colonised plants showed significantly improved nutrient and a decreased Cd and Zn uptake as revealed by TRXRF, thus confirming the functionality of the symbiosis. Reduced heavy metal uptake, especially at higher soil metal contents, indicates a changed metal tolerance strategy in colonised T. praecox plants. This is to our knowledge the first report on AM colonisation of the Zn, Cd and Pb hyperaccumulator T. praecox in a greenhouse experiment. - Colonisation of a Zn, Cd and Pb hyperaccumulator Thlaspi praecox with arbuscular mycorrhizal fungi resulted in improved nutrient and reduced Cd and Zn uptake.

  12. A Zinc-Finger-Family Transcription Factor, AbVf19, Is Required for the Induction of a Gene Subset Important for Virulence in Alternaria brassicicola

    Energy Technology Data Exchange (ETDEWEB)

    Srivastava, Akhil [Univ. of Hawaii, Manoa, HI (United States); Ohm, Robin A. [USDOE Joint Genome Inst., Walnut Creek, CA (United States); Oxiles, Lindsay [Univ. of Hawaii, Manoa, HI (United States); Brooks, Fred [Univ. of Hawaii, Manoa, HI (United States); Lawrence, Christopher B. [Virginia Polytechnic Inst. and State Univ. (Virginia Tech), Blacksburg, VA (United States); Grigoriev, Igor V. [USDOE Joint Genome Inst., Walnut Creek, CA (United States); Cho, Yangrae [Univ. of Hawaii, Manoa, HI (United States)

    2011-10-26

    Alternaria brassicicola is a successful saprophyte and necrotrophic plant pathogen with a broad host range within the family Brassicaceae. It produces secondary metabolites that marginally affect virulence. Cell wall degrading enzymes (CDWE) have been considered important for pathogenesis but none of them individually have been identified as significant virulence factors in A. brassicicola. In this study, knockout mutants of a gene, AbVf19, were created and produced considerably smaller lesions than the wild type on inoculated host plants. The presence of tandem zinc-finger domains in the predicted amino acid sequence and nuclear localization of AbVf19- reporter protein suggested that it was a transcription factor. Gene expression comparisons using RNA-seq identified 74 genes being downregulated in the mutant during a late stage of infection. Among the 74 downregulated genes, 28 were putative CWDE genes. These were hydrolytic enzyme genes that composed a small fraction of genes within each family of cellulases, pectinases, cutinases, and proteinases. The mutants grew slower than the wild type on an axenic medium with pectin as a major carbon source. This study demonstrated the existence and the importance of a transcription factor that regulates a suite of genes that are important for decomposing and utilizing plant material during the late stage of plant infection.

  13. Phytochemical and Biological Investigation of Two Diplotaxis Species Growing in Tunisia: D. virgata & D. erucoides

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    Nizar Ben Salah

    2015-10-01

    Full Text Available A phytochemical investigation of Diplotaxis virgata D.C. and D. erucoides (L. D.C. (Brassicaceae offered to the isolation of two new flavonoids isorhamnetin-3-O-α-l-glucopyranoside (1 and rhamnetin-3,3ʹ-di-O-β-d-glucopyranoside (2, respectively. Their structures have been elucidated from the extended spectroscopic methods, including 1D- and 2D-NMR, UV and mass spectrometry analysis and by comparison with literature data. The fatty acid composition of the hexane extracts of the two species was also investigated by using GC-MS. The antioxidant activity of ethanol, ethyl acetate, n-butanol extracts and the isolated compounds from the two species was evaluated using DPPH and ABTS+ scavenging assays. All the tested samples showed an efficient radical scavenging ability, with IC50 values ranging from 16–40 µg/mL for the DPPH and from 17–44 µg/mL for the ABTS+ assays. In addition, the antibacterial activity of the prepared extracts and compounds 1 and 2, determined by well diffusion agar method against two Gram positive and five Gram negative bacteria, was evaluated and the results showed significant effects against all strains used.

  14. Senescence-specific alteration of hydrogen peroxide levels in Arabidopsis thaliana and oilseed rape spring variety Brassica napus L. cv. Mozart.

    Science.gov (United States)

    Bieker, Stefan; Riester, Lena; Stahl, Mark; Franzaring, Jürgen; Zentgraf, Ulrike

    2012-08-01

    In order to analyze the signaling function of hydrogen peroxide (H(2)O(2)) production in senescence in more detail, we manipulated intracellular H(2)O(2) levels in Arabidopsis thaliala (L.) Heynh by using the hydrogen-peroxide-sensitive part of the Escherichia coli transcription regulator OxyR, which was directed to the cytoplasm as well as into the peroxisomes. H(2)O(2) levels were lowered and senescence was delayed in both transgenic lines, but OxyR was found to be more effective in the cytoplasm. To transfer this knowledge to crop plants, we analyzed oilseed rape plants Brassica napus L. cv. Mozart for H(2)O(2) and its scavenging enzymes catalase (CAT) and ascorbate peroxidase (APX) during leaf and plant development. H(2)O(2) levels were found to increase during bolting and flowering time, but no increase could be observed in the very late stages of senescence. With increasing H(2)O(2) levels, CAT and APX activities declined, so it is likely that similar mechanisms are used in oilseed rape and Arabidopsis to control H(2)O(2) levels. Under elevated CO(2) conditions, oilseed rape senescence was accelerated and coincided with an earlier increase in H(2)O(2) levels, indicating that H(2)O(2) may be one of the signals to inducing senescence in a broader range of Brassicaceae.

  15. Diversité des communautés de mauvaises herbes des cultures annuelles de Côte-d'Or (France

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    Dessaint F.

    2001-01-01

    Full Text Available Diversity of weed communities of annual crops in Cote-d'Or, France. Weed flora of annual crops in Cote-d'Or, France, were characterized in three successive growing seasons by measuring species frequencies and abundance over 245 fields. A total of 210 species in 143 genera were recorded representing a total of 43 families with Asteraceae, Poaceae, Fabaceae, Scrophulariaceae, Brassicaceae, Lamiaceae and Caryophyllaceae predominating. More than half of the species occurred in less than 5/ of the sampled plots (fields x years and only 9 species (namely Galium aparine L., Polygonum aviculare L., Fallopia convolvulus (L. A. Loeve, Alopecurus myosuroides Hudson, Stellaria media (L. Vill., Convolvulus arvensis L., Sinapis arvensis L., Veronica persica Poiret and Anagallis arvensis L. occurred in more than 50/ of the plots. The maximum plot density was greater than 20 plants per square metre for more than one third of the species. Meanwhile, the plots where the density exceeded 20 plants per square metre, were rare and represented, for the most abundant species (A. myosuroides, less than 16/ of the plots. The total number of weed species per plots varied from 4 to 65 with a median species number of 20. In most of the plots, the weed community was mainly composed of species having a small density (less than one plant per square metre and was dominated by only one or two species in half of the plots.

  16. Crossfit analysis: a novel method to characterize the dynamics of induced plant responses

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    Smilde Age K

    2009-12-01

    Full Text Available Abstract Background Many plant species show induced responses that protect them against exogenous attacks. These responses involve the production of many different bioactive compounds. Plant species belonging to the Brassicaceae family produce defensive glucosinolates, which may greatly influence their favorable nutritional properties for humans. Each responding compound may have its own dynamic profile and metabolic relationships with other compounds. The chemical background of the induced response is therefore highly complex and may therefore not reveal all the properties of the response in any single model. Results This study therefore aims to describe the dynamics of the glucosinolate response, measured at three time points after induction in a feral Brassica, by a three-faceted approach, based on Principal Component Analysis. First the large-scale aspects of the response are described in a 'global model' and then each time-point in the experiment is individually described in 'local models' that focus on phenomena that occur at specific moments in time. Although each local model describes the variation among the plants at one time-point as well as possible, the response dynamics are lost. Therefore a novel method called the 'Crossfit' is described that links the local models of different time-points to each other. Conclusions Each element of the described analysis approach reveals different aspects of the response. The crossfit shows that smaller dynamic changes may occur in the response that are overlooked by global models, as illustrated by the analysis of a metabolic profiling dataset of the same samples.

  17. New Records of Seed Plants from Some Provinces in China (Ⅰ)%中国种子植物省级分布新记录(一)

    Institute of Scientific and Technical Information of China (English)

    相银龙; 周磊; 丛义艳; 刘克明

    2011-01-01

    Fifteen species and two varieties are reported as new records to four provinces in China, ie Impatiens sulcata Wall. (Balsaminaceae), Impatiens racemosa DC. (Balsaminaceae) and Glycyrrhiza yunnanensis Cheng f. et L. K. Dai ex P. C. Li. (Leguminosae) for Sichuan, Impatiens tubulosa Hemsl.(Balsaminaceae), Impatiens macrovexilla var. yaoshanensis S. X. Yu, Y. L. Chen & H. N. Qin,(Balsaminaceae), Impatiens monticoia Hook. f. (Balsaminaceae), Eutrema tenue Makino (Brassicaceae),Hilliella changhuaensis Y. H. Zhang (Brassicaceae), Desmodium heterocarpon (Linn) DC. (Leguminosae),Ficus sarmentosa Buch. -Ham. ex J. E. SM. Var. thunbergii (Maxim.) Corner (Moraceae), A mpelopsis delavayana Planch. var. glabra (Diels & Gilg) C. L. Li (Vitaceae), Tetrastigrna erubescens Planch.(Vitaceae), Ilex tutcheri Merr. (Aquifoliaceae) and Peristylus densus (Lindl.) Santap. et Kapad.(Orchidaceae) for Hunan, Impatiens napoensis Y. L. Chen(Balsaminaceae) and Impatiens chiulungensis Y.L. Chen, (Balsaminaceae) for Yunnan, Impatiens yui S. H. Huang (Balsaminaceae) for Xizang.%报导了凤仙花科、十字花科、豆科、桑科、葡萄科、冬青科和兰科共15种2变种植物在我国4个省区的分布新记录.其中四川分布新记录有槽茎凤仙花(Impatiens sulcata Wall.)、总状凤仙花(Impatiens racemosa DC.)和云南甘草(Glycyrrhiza yunnanensis Cheng f.et L.K.Dai ex P.C.Li.);湖南分布新记录有管茎凤仙花(Impatiens tubulosa Hemsl.)、瑶山凤仙花(Impatiens macrovexilla var.yaoshanensis S.X.Yu,Y.L.Chen & H.N.Qin,)、山地凤仙花(Impatiens monticoia Hook.f.)、日本山嵛菜(Eutrema tenue Makino)、昌化泡果荠(Hilliella changhuaensis Y.H.Zhang)、糙毛假地豆(Desmodium heterocarpon(Linn)DC.)、少脉爬藤榕(Ficus sarmentosa Buch.-Ham.ex J.E.SM.var.thunbergii(Maxim.)Corner)、掌裂蛇葡萄(Ampelopsis delavayana Planch.var.glabra(Diels & Gilg)C.L.Li)、红枝崖爬藤(Tetrastigma erubescens Planch.)、罗浮冬青(Ilex tutcheri Merr

  18. Revisión de los hospederos del gusano cogollero del maíz, Spodoptera frugiperda (Lepidoptera: Noctuidae Review of the host plants of fall armyworm, Spodoptera frugiperda (Lepidoptera: Noctuidae

    Directory of Open Access Journals (Sweden)

    Augusto Casmuz

    2010-12-01

    Full Text Available Con la finalidad de actualizar los hospederos citados para Spodoptera frugiperda (J. E. Smith, se realizó una revisión bibliográfica. La búsqueda de hospederos fue agrupada por zona y país. Para el norte del Continente Americano, se incluyeron las citas encontradas para EE.UU., México, América Central e islas del Caribe. En Sudamérica, se agruparon todos los países del cono sur, a excepción de la Argentina, la cual fue considerada por separado. Se encontraron un total de 186 hospederos, repartidos en 42 familias. Entre los hospederos más citados, el 35,5% perteneció a la familia Poaceae, el 11,3% a la familia Fabaceae, a la familia Solanaceae y Asteraceae un 4,3 % cada una, siguiéndoles las Rosaceae y Chenopodiaceae con un 3,7% cada una y, finalmente, las Brassicaceae y Cyperaceae con un 3,2%. Del total de plantas encontradas (186 el 64% se hallaron presentes en Norteamérica y Centroamérica, un 53% en Sudamérica y un 32% en Argentina. Las especies más citadas fueron (en orden decreciente para Norteamérica: maíz, sorgo, maní, grama bermuda, caña de azúcar y arroz; para Sudamérica: maíz, arroz, sorgo, poroto, algodón y maní; y por último, en Argentina fueron: maíz, soja, algodón, alfalfa, tomate, lino, papa y sorgo. También se aporta información sobre su ciclo de vida, hábitos y comportamiento sobre los principales hospederos, migración y biotipos.In order to update records of Spodoptera frugiperda (J. E. Smith host plants, a bibliographic review was made. Host plant search was organized into groups per zones and countries. Records from the U.S., Mexico, Central America and the Caribbean Islands were grouped together as belonging to Northern America. As South American records, all reports were included except for those from Argentina. 186 host plants were found and they belong to 42 different families. The most cited hosts are part of the following families: Poaceae (35.5%, Fabaceae (11.3%, Solanaceae and

  19. Major Transcriptome Reprogramming Underlies Floral Mimicry Induced by the Rust Fungus Puccinia monoica in Boechera stricta

    Science.gov (United States)

    Haugen, Riston H.; Saunders, Diane G. O.; Leonelli, Lauriebeth; MacLean, Dan; Hogenhout, Saskia A.; Kamoun, Sophien

    2013-01-01

    Pucciniamonoica is a spectacular plant parasitic rust fungus that triggers the formation of flower-like structures (pseudoflowers) in its Brassicaceae host plant Boecherastricta. Pseudoflowers mimic in shape, color, nectar and scent co-occurring and unrelated flowers such as buttercups. They act to attract insects thereby aiding spore dispersal and sexual reproduction of the rust fungus. Although much ecological research has been performed on P. monoica-induced pseudoflowers, this system has yet to be investigated at the molecular or genomic level. To date, the molecular alterations underlying the development of pseudoflowers and the genes involved have not been described. To address this, we performed gene expression profiling to reveal 256 plant biological processes that are significantly altered in pseudoflowers. Among these biological processes, plant genes involved in cell fate specification, regulation of transcription, reproduction, floral organ development, anthocyanin (major floral pigments) and terpenoid biosynthesis (major floral volatile compounds) were down-regulated in pseudoflowers. In contrast, plant genes involved in shoot, cotyledon and leaf development, carbohydrate transport, wax biosynthesis, cutin transport and L-phenylalanine metabolism (pathway that results in phenylethanol and phenylacetaldehyde volatile production) were up-regulated. These findings point to an extensive reprogramming of host genes by the rust pathogen to induce floral mimicry. We also highlight 31 differentially regulated plant genes that are enriched in the biological processes mentioned above, and are potentially involved in the formation of pseudoflowers. This work illustrates the complex perturbations induced by rust pathogens in their host plants, and provides a starting point for understanding the molecular mechanisms of pathogen-induced floral mimicry. PMID:24069397

  20. A clade-specific Arabidopsis gene connects primary metabolism and senescence

    Directory of Open Access Journals (Sweden)

    Dallas C. Jones

    2016-07-01

    Full Text Available Nearly immobile, plants have evolved new components to be able to respond to changing environments. One example is Qua Quine Starch (QQS, AT3G30720, an Arabidopsis thaliana-specific orphan gene that integrates primary metabolism with adaptation to environment changes. SAQR (Senescence-Associated and QQS-Related, AT1G64360, is unique to a clade within the family Brassicaceae; as such, the gene may have arisen about 20 million years ago. SAQR is up-regulated in QQS RNAi mutants and in the apx1 mutant under light-induced oxidative stress. SAQR plays a role in carbon allocation: overexpression lines of SAQR have significantly decreased starch content; conversely, in a SAQR T-DNA knockout line, starch accumulation is increased. Meta-analysis of public microarray data indicates that SAQR expression is correlated with expression of a subset of genes involved in senescence, defense, and stress responses. SAQR promoter::GUS expression analysis reveals that SAQR expression increases after leaf expansion and photosynthetic capacity have peaked, just prior to visible natural senescence. SAQR is expressed predominantly within leaf and cotyledon vasculature, increasing in intensity as natural senescence continues, and then decreasing prior to death. In contrast, under experimentally-induced senescence, SAQR expression increases in vasculature of cotyledons but not in true leaves. In SAQR knockout line, the transcript level of the dirigent-like disease resistance gene (AT1G22900 is increased, while that of the Early Light Induced Protein 1 gene (ELIP1, AT3G22840 is decreased. Taken together, these data indicate that SAQR may function in the QQS network, playing a role in integration of primary metabolism with adaptation to internal and environmental changes, specifically those that affect the process of senescence.

  1. Genome-wide identification of aquaporin encoding genes in Brassica oleracea and their phylogenetic sequence comparison to Brassica crops and Arabidopsis

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    Till Arvid Diehn

    2015-04-01

    Full Text Available Aquaporins (AQPs are essential channel proteins that regulate plant water homeostasis and the uptake and distribution of uncharged solutes such as metalloids, urea, ammonia and carbon dioxide. Despite their importance as crop plants, little is known about AQP gene and protein function in cabbage (Brassica oleracea and other Brassica species. The recent releases of the genome sequences of B. oleracea and B. rapa allow comparative genomic studies in these species to investigate the evolution and features of Brassica genes and proteins.In this study, we identified all AQP genes in B. oleracea by a genome-wide survey. In total, 67 genes of four plant AQP subfamilies were identified. Their full-length gene sequences and locations on chromosomes and scaffolds were manually curated. The identification of six additional full-length AQP sequences in the B. rapa genome added to the recently published AQP protein family of this species. A phylogenetic analysis of AQPs of A. thaliana, B. oleracea, B. rapa allowed us to follow AQP evolution in closely related species and to systematically classify and (re- name these isoforms. Thirty-three groups of AQP-orthologous genes were identified between B. oleracea and Arabidopsis and their expression was analyzed in different organs. The two selectivity filters, gene structure and coding sequences were highly conserved within each AQP subfamily while sequence variations in some introns and untranslated regions were frequent. These data suggest a similar substrate selectivity and function of Brassica AQPs compared to Arabidopsis orthologs. The comparative analyses of all AQP subfamilies in three Brassicaceae species give initial insights into AQP evolution in these taxa. Based on the genome-wide AQP identification in B. oleracea and the sequence analysis and reprocessing of Brassica AQP information, our dataset provides a sequence resource for further investigations of the physiological and molecular functions of

  2. Expansion and Functional Divergence of AP2 Group Genes in Spermatophytes Determined by Molecular Evolution and Arabidopsis Mutant Analysis

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    Pengkai Wang

    2016-09-01

    Full Text Available The APETALA2 (AP2 genes represent the AP2 group within a large group of DNA-binding proteins called AP2/EREBP. The AP2 gene is functional and necessary for flower development, stem cell maintenance, and seed development, whereas the other members of AP2 group redundantly affect flowering time. Here we study the phylogeny of AP2 group genes in spermatophytes. Spermatophyte AP2 group genes can be classified into AP2 and TOE types, six clades, and we found that the AP2 group homologs in gymnosperms belong to the AP2 type, whereas TOE types are absent, which indicates the AP2 type gene are more ancient and TOE type was split out of AP2 type and losing the major function. In Brassicaceae, the expansion of AP2 and TOE type lead to the gene number of AP2 group were up to six. Purifying selection appears to have been the primary driving force of spermatophyte AP2 group evolution, although positive selection occurred in the AP2 clade. The transition from exon to intron of AtAP2 in Arabidopsis mutant leads to the loss of gene function and the same situation was found in AtTOE2. Combining this evolutionary analysis and published research, the results suggest that typical AP2 group genes may first appear in gymnosperms and diverged in angiosperms, following expansion of group members and functional differentiation. In angiosperms, AP2 genes (AP2 clade inherited key functions from ancestors and other genes of AP2 group lost most function but just remained flowering time controlling in gene formation. In this study, the phylogenies of AP2 group genes in spermatophytes was analyzed, which supported the evidence for the research of gene functional evolution of AP2 group.

  3. Revisión de los hospederos del gusano cogollero del maíz, Spodoptera frugiperda (Lepidoptera: Noctuidae

    Directory of Open Access Journals (Sweden)

    Augusto CASMUZ

    2010-01-01

    Full Text Available Con la finalidad de actualizar los hospederos citados para Spodoptera frugiperda (J. E. Smith, se realizó una revisión bibliográfica. La búsqueda de hospederos fue agrupada por zona y país. Para el norte del Continente Americano, se incluyeron las citas encontradas para EE.UU., México, América Central e islas del Caribe. En Sudamérica, se agruparon todos los países del cono sur, a excepción de la Argentina, la cual fue considerada por separado. Se encontraron un total de 186 hospederos, repartidos en 42 familias. Entre los hospederos más citados, el 35,5% perteneció a la familia Poaceae, el 11,3% a la familia Fabaceae, a la familia Solanaceae y Asteraceae un 4,3 % cada una, siguiéndoles las Rosaceae y Chenopodiaceae con un 3,7% cada una y, finalmente, las Brassicaceae y Cyperaceae con un 3,2%. Del total de plantas encontradas (186 el 64% se hallaron presentes en Norteamérica y Centroamérica, un 53% en Sudamérica y un 32% en Argentina. Las especies más citadas fueron (en orden decreciente para Norteamérica: maíz, sorgo, maní, grama bermuda, caña de azúcar y arroz; para Sudamérica: maíz, arroz, sorgo, poroto, algodón y maní; y por último, en Argentina fueron: maíz, soja, algodón, alfalfa, tomate, lino, papa y sorgo. También se aporta información sobre su ciclo de vida, hábitos y comportamiento sobre los principales hospederos, migración y biotipos.

  4. Carotenogenesis Is Regulated by 5′UTR-Mediated Translation of Phytoene Synthase Splice Variants1[OPEN

    Science.gov (United States)

    Voß, Björn; Maass, Dirk; Beyer, Peter

    2016-01-01

    Phytoene synthase (PSY) catalyzes the highly regulated, frequently rate-limiting synthesis of the first biosynthetically formed carotene. While PSY constitutes a small gene family in most plant taxa, the Brassicaceae, including Arabidopsis (Arabidopsis thaliana), predominantly possess a single PSY gene. This monogenic situation is compensated by the differential expression of two alternative splice variants (ASV), which differ in length and in the exon/intron retention of their 5′UTRs. ASV1 contains a long 5′UTR (untranslated region) and is involved in developmentally regulated carotenoid formation, such as during deetiolation. ASV2 contains a short 5′UTR and is preferentially induced when an immediate increase in the carotenoid pathway flux is required, such as under salt stress or upon sudden light intensity changes. We show that the long 5′UTR of ASV1 is capable of attenuating the translational activity in response to high carotenoid pathway fluxes. This function resides in a defined 5′UTR stretch with two predicted interconvertible RNA conformations, as known from riboswitches, which might act as a flux sensor. The translation-inhibitory structure is absent from the short 5′UTR of ASV2 allowing to bypass translational inhibition under conditions requiring rapidly increased pathway fluxes. The mechanism is not found in the rice (Oryza sativa) PSY1 5′UTR, consistent with the prevalence of transcriptional control mechanisms in taxa with multiple PSY genes. The translational control mechanism identified is interpreted in terms of flux adjustments needed in response to retrograde signals stemming from intermediates of the plastid-localized carotenoid biosynthesis pathway. PMID:27729470

  5. Vegetation and Climate history of Franz Jozef Land Archipelago in the Late Holocene according pollen data

    Science.gov (United States)

    Nosevich, Ekaterina; Anisimov, Michail; Sapelko, Tatyana

    2015-04-01

    The archipelago Franz-Josef Land is situated in the Arctic Ocean (80°40' N, 54°50'E). It is one of the important areas for arctic research due to organization of Russian Arctic National Park there. Therefore, an interest to the environmental history of this territory grows up and any new data might have a high value. However, geographical remoteness of the archipelago is the reason why there are not much work has been done up to date. .A focus of our researches is vegetation and climate reconstruction during the Late Holocene history according pollen data. In frame of studying of the Franz Josef Land during complex expedition of Russian Arctic National Park on the islands geomorphological and botanical researches was occurred. Nowadays the typical island of archipelago presents the ice cap and glacier-free marine terraces of 35 m high at maximum, where solifluction and permafrost are developed. The archipelago has a maritime Arctic climate. Vegetation of archipelago Franz-Josef Land presents the northern type of Polar Desert. It includes 57 species of vascular plants (Poaceae, Juncaceae, Caryophyllaceae, Brassicaceae, Saxifragaceae etc). We studied the peat core from the southern part of Majbel Island, in the archipelago Franz Josef Land. More than a half of the island is covered by glacier. The core was sampled at the inner margin of ice-free high marine terrace, near the southern slope of bedrock hill. We received preliminary pollen data and radiocarbon data 3010±80 C14 y.a. at the bottom. The pollen concentration is low, but we manage to make some reconstructions of vegetation and climate. For correct interpretation of our results, we used surface samples from different islands of archipelago (Jackson, Hooker, Greely, Alexsandra land, Yeva-Liv, Appolonov, Georg land, Kane, Bell). Subrecent spectra include species presented in flora of region, but also those which are not founded at this region in this time.

  6. The impact of the absence of aliphatic glucosinolates on insect herbivory in Arabidopsis.

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    Jules Beekwilder

    Full Text Available Aliphatic glucosinolates are compounds which occur in high concentrations in Arabidopsis thaliana and other Brassicaceae species. They are important for the resistance of the plant to pest insects. Previously, the biosynthesis of these compounds was shown to be regulated by transcription factors MYB28 and MYB29. We now show that MYB28 and MYB29 are partially redundant, but in the absence of both, the synthesis of all aliphatic glucosinolates is blocked. Untargeted and targeted biochemical analyses of leaf metabolites showed that differences between single and double knock-out mutants and wild type plants were restricted to glucosinolates. Biosynthesis of long-chain aliphatic glucosinolates was blocked by the myb28 mutation, while short-chain aliphatic glucosinolates were reduced by about 50% in both the myb28 and the myb29 single mutants. Most remarkably, all aliphatic glucosinolates were completely absent in the double mutant. Expression of glucosinolate biosynthetic genes was slightly but significantly reduced by the single myb mutations, while the double mutation resulted in a drastic decrease in expression of these genes. Since the myb28myb29 double mutant is the first Arabidopsis genotype without any aliphatic glucosinolates, we used it to establish the relevance of aliphatic glucosinolate biosynthesis to herbivory by larvae of the lepidopteran insect Mamestra brassicae. Plant damage correlated inversely to the levels of aliphatic glucosinolates observed in those plants: Larval weight gain was 2.6 fold higher on the double myb28myb29 mutant completely lacking aliphatic glucosinolates and 1.8 higher on the single mutants with intermediate levels of aliphatic glucosinolates compared to wild type plants.

  7. The impact of the absence of aliphatic glucosinolates on insect herbivory in Arabidopsis.

    Science.gov (United States)

    Beekwilder, Jules; van Leeuwen, Wessel; van Dam, Nicole M; Bertossi, Monica; Grandi, Valentina; Mizzi, Luca; Soloviev, Mikhail; Szabados, Laszlo; Molthoff, Jos W; Schipper, Bert; Verbocht, Hans; de Vos, Ric C H; Morandini, Piero; Aarts, Mark G M; Bovy, Arnaud

    2008-04-30

    Aliphatic glucosinolates are compounds which occur in high concentrations in Arabidopsis thaliana and other Brassicaceae species. They are important for the resistance of the plant to pest insects. Previously, the biosynthesis of these compounds was shown to be regulated by transcription factors MYB28 and MYB29. We now show that MYB28 and MYB29 are partially redundant, but in the absence of both, the synthesis of all aliphatic glucosinolates is blocked. Untargeted and targeted biochemical analyses of leaf metabolites showed that differences between single and double knock-out mutants and wild type plants were restricted to glucosinolates. Biosynthesis of long-chain aliphatic glucosinolates was blocked by the myb28 mutation, while short-chain aliphatic glucosinolates were reduced by about 50% in both the myb28 and the myb29 single mutants. Most remarkably, all aliphatic glucosinolates were completely absent in the double mutant. Expression of glucosinolate biosynthetic genes was slightly but significantly reduced by the single myb mutations, while the double mutation resulted in a drastic decrease in expression of these genes. Since the myb28myb29 double mutant is the first Arabidopsis genotype without any aliphatic glucosinolates, we used it to establish the relevance of aliphatic glucosinolate biosynthesis to herbivory by larvae of the lepidopteran insect Mamestra brassicae. Plant damage correlated inversely to the levels of aliphatic glucosinolates observed in those plants: Larval weight gain was 2.6 fold higher on the double myb28myb29 mutant completely lacking aliphatic glucosinolates and 1.8 higher on the single mutants with intermediate levels of aliphatic glucosinolates compared to wild type plants.

  8. Integration of a constraint-based metabolic model of Brassica napus developing seeds with (13)C-metabolic flux analysis.

    Science.gov (United States)

    Hay, Jordan O; Shi, Hai; Heinzel, Nicolas; Hebbelmann, Inga; Rolletschek, Hardy; Schwender, Jorg

    2014-01-01

    The use of large-scale or genome-scale metabolic reconstructions for modeling and simulation of plant metabolism and integration of those models with large-scale omics and experimental flux data is becoming increasingly important in plant metabolic research. Here we report an updated version of bna572, a bottom-up reconstruction of oilseed rape (Brassica napus L.; Brassicaceae) developing seeds with emphasis on representation of biomass-component biosynthesis. New features include additional seed-relevant pathways for isoprenoid, sterol, phenylpropanoid, flavonoid, and choline biosynthesis. Being now based on standardized data formats and procedures for model reconstruction, bna572+ is available as a COBRA-compliant Systems Biology Markup Language (SBML) model and conforms to the Minimum Information Requested in the Annotation of Biochemical Models (MIRIAM) standards for annotation of external data resources. Bna572+ contains 966 genes, 671 reactions, and 666 metabolites distributed among 11 subcellular compartments. It is referenced to the Arabidopsis thaliana genome, with gene-protein-reaction (GPR) associations resolving subcellular localization. Detailed mass and charge balancing and confidence scoring were applied to all reactions. Using B. napus seed specific transcriptome data, expression was verified for 78% of bna572+ genes and 97% of reactions. Alongside bna572+ we also present a revised carbon centric model for (13)C-Metabolic Flux Analysis ((13)C-MFA) with all its reactions being referenced to bna572+ based on linear projections. By integration of flux ratio constraints obtained from (13)C-MFA and by elimination of infinite flux bounds around thermodynamically infeasible loops based on COBRA loopless methods, we demonstrate improvements in predictive power of Flux Variability Analysis (FVA). Using this combined approach we characterize the difference in metabolic flux of developing seeds of two B. napus genotypes contrasting in starch and oil content.

  9. Ecological genomics in Xanthomonas: the nature of genetic adaptation with homologous recombination and host shifts

    KAUST Repository

    Huang, Chao-Li

    2015-03-15

    Background: Comparative genomics provides insights into the diversification of bacterial species. Bacterial speciation usually takes place with lasting homologous recombination, which not only acts as a cohering force between diverging lineages but brings advantageous alleles favored by natural selection, and results in ecologically distinct species, e.g., frequent host shift in Xanthomonas pathogenic to various plants. Results: Using whole-genome sequences, we examined the genetic divergence in Xanthomonas campestris that infected Brassicaceae, and X. citri, pathogenic to a wider host range. Genetic differentiation between two incipient races of X. citri pv. mangiferaeindicae was attributable to a DNA fragment introduced by phages. In contrast to most portions of the genome that had nearly equivalent levels of genetic divergence between subspecies as a result of the accumulation of point mutations, 10% of the core genome involving with homologous recombination contributed to the diversification in Xanthomonas, as revealed by the correlation between homologous recombination and genomic divergence. Interestingly, 179 genes were under positive selection; 98 (54.7%) of these genes were involved in homologous recombination, indicating that foreign genetic fragments may have caused the adaptive diversification, especially in lineages with nutritional transitions. Homologous recombination may have provided genetic materials for the natural selection, and host shifts likely triggered ecological adaptation in Xanthomonas. To a certain extent, we observed positive selection nevertheless contributed to ecological divergence beyond host shifting. Conclusion: Altogether, mediated with lasting gene flow, species formation in Xanthomonas was likely governed by natural selection that played a key role in helping the deviating populations to explore novel niches (hosts) or respond to environmental cues, subsequently triggering species diversification. © Huang et al.

  10. Validation of SNP allele frequencies determined by pooled next-generation sequencing in natural populations of a non-model plant species.

    Science.gov (United States)

    Rellstab, Christian; Zoller, Stefan; Tedder, Andrew; Gugerli, Felix; Fischer, Martin C

    2013-01-01

    Sequencing of pooled samples (Pool-Seq) using next-generation sequencing technologies has become increasingly popular, because it represents a rapid and cost-effective method to determine allele frequencies for single nucleotide polymorphisms (SNPs) in population pools. Validation of allele frequencies determined by Pool-Seq has been attempted using an individual genotyping approach, but these studies tend to use samples from existing model organism databases or DNA stores, and do not validate a realistic setup for sampling natural populations. Here we used pyrosequencing to validate allele frequencies determined by Pool-Seq in three natural populations of Arabidopsis halleri (Brassicaceae). The allele frequency estimates of the pooled population samples (consisting of 20 individual plant DNA samples) were determined after mapping Illumina reads to (i) the publicly available, high-quality reference genome of a closely related species (Arabidopsis thaliana) and (ii) our own de novo draft genome assembly of A. halleri. We then pyrosequenced nine selected SNPs using the same individuals from each population, resulting in a total of 540 samples. Our results show a highly significant and accurate relationship between pooled and individually determined allele frequencies, irrespective of the reference genome used. Allele frequencies differed on average by less than 4%. There was no tendency that either the Pool-Seq or the individual-based approach resulted in higher or lower estimates of allele frequencies. Moreover, the rather high coverage in the mapping to the two reference genomes, ranging from 55 to 284x, had no significant effect on the accuracy of the Pool-Seq. A resampling analysis showed that only very low coverage values (below 10-20x) would substantially reduce the precision of the method. We therefore conclude that a pooled re-sequencing approach is well suited for analyses of genetic variation in natural populations.

  11. Scientific Opinion on the pest categorisation of Circulifer haematoceps and C. tenellus

    Directory of Open Access Journals (Sweden)

    EFSA Panel on Plant Health (PLH

    2015-01-01

    Full Text Available The Panel on Plant Health performed a pest categorisation of Circulifer tenellus (Ct and C. haematoceps (Ch (Hemiptera, Cicadellidae for the European Union (EU territory. They are well-defined insect species that can be identified on the basis of external morphology and male genitalia. Ch and Ct are considered to originate from the Old World; Ct is also present in North America and the Caribbean. In the EU, Ch is reported in 11 Member States, mostly in southern or central Europe, and Ct is reported in Spain, France, Italy and Greece. Neither species is harmful by itself, but they are vectors of Spiroplasma citri, the causal agent of, for example, citrus stubborn disease. The major impact of Ct in North America results from the transmission of Beet curly top virus to sugarbeet. Ct also transmits ‘Candidatus Phytoplasma trifolii’ and Ch transmits ‘Ca P. asteris’. There is no transovarial transmission of the pathogens. Ch and Ct are regulated harmful organisms in the EU and listed in Annex II, Part A, Section II, of Council Directive 2000/29/EC together with Spiroplasma citri and with respect to plants of Citrus, Fortunella, Poncirus and their hybrids, other than fruit and seeds, despite the fact that Ct and Ch have a larger host range. Ch and Ct are likely to be disseminated by plants for planting (the eggs are laid into the leaf veins and petioles, they have also been observed to hitch-hike on terrestrial vehicles, and Ct is known for its very high flight capacity. Both species have many hosts, in particular in the Chenopodiaceae, Brassicaceae and Asteraceae. Ecological conditions in the risk assessment area are suitable for the establishment and spread of S. citri, at least where citrus is currently grown.

  12. Low-temperature isolation of disease-suppressive bacteria and characterization of a distinctive group of pseudomonads.

    Science.gov (United States)

    Johansson, P Maria; Wright, Sandra A I

    2003-11-01

    The influence of environmental factors during isolation on the composition of potential biocontrol isolates is largely unknown. Bacterial isolates that efficiently suppressed wheat seedling blight caused by Fusarium culmorum were found by isolating psychrotrophic, root-associated bacteria and by screening them in a bioassay that mimicked field conditions. The impact of individual isolation factors on the disease-suppressive index (DSI) of almost 600 isolates was analyzed. The bacteria originated from 135 samples from 62 sites in Sweden and Switzerland. The isolation factors that increased the probability of finding isolates with high DSIs were sampling from arable land, Swiss origin of samples, and origination of isolates from plants belonging to the family Brassicaceae. The colony morphology of the isolates was characterized and compared to DSIs, which led to identification of a uniform morphological group containing 57 highly disease-suppressive isolates. Isolates in this group were identified as Pseudomonas sp.; they were fluorescent on King's medium B and had characteristic crystalline structures in their colonies. These isolates were morphologically similar to seven strains that had previously been selected for suppression of barley net blotch caused by Drechslera teres. Members of this morphological group grow at 1.5 degrees C and produce an antifungal polyketide (2,3-deepoxy-2,3-didehydrorhizoxin [DDR]). They have similar two-dimensional polyacrylamide gel electrophoresis protein profiles, phenotypic characteristics, and in vitro inhibition spectra of pathogens. In summary, in this paper we describe some isolation factors that are important for obtaining disease-suppressive bacteria in our system, and we describe a novel group of biocontrol pseudomonads.

  13. Discovery of clubroot-resistant genes in Brassica napus by transcriptome sequencing.

    Science.gov (United States)

    Chen, S W; Liu, T; Gao, Y; Zhang, C; Peng, S D; Bai, M B; Li, S J; Xu, L; Zhou, X Y; Lin, L B

    2016-01-01

    Clubroot significantly affects plants of the Brassicaceae family and is one of the main diseases causing serious losses in B. napus yield. Few studies have investigated the clubroot-resistance mechanism in B. napus. Identification of clubroot-resistant genes may be used in clubroot-resistant breeding, as well as to elucidate the molecular mechanism behind B. napus clubroot-resistance. We used three B. napus transcriptome samples to construct a transcriptome sequencing library by using Illumina HiSeq™ 2000 sequencing and bioinformatic analysis. In total, 171 million high-quality reads were obtained, containing 96,149 unigenes of N50-value. We aligned the obtained unigenes with the Nr, Swiss-Prot, clusters of orthologous groups, and gene ontology databases and annotated their functions. In the Kyoto encyclopedia of genes and genomes database, 25,033 unigenes (26.04%) were assigned to 124 pathways. Many genes, including broad-spectrum disease-resistance genes, specific clubroot-resistant genes, and genes related to indole-3-acetic acid (IAA) signal transduction, cytokinin synthesis, and myrosinase synthesis in the Huashuang 3 variety of B. napus were found to be related to clubroot-resistance. The effective clubroot-resistance observed in this variety may be due to the induced increased expression of these disease-resistant genes and strong inhibition of the IAA signal transduction, cytokinin synthesis, and myrosinase synthesis. The homology observed between unigenes 0048482, 0061770 and the Crr1 gene shared 94% nucleotide similarity. Furthermore, unigene 0061770 could have originated from an inversion of the Crr1 5'-end sequence.

  14. Major transcriptome reprogramming underlies floral mimicry induced by the rust fungus Puccinia monoica in Boechera stricta.

    Directory of Open Access Journals (Sweden)

    Liliana M Cano

    Full Text Available Pucciniamonoica is a spectacular plant parasitic rust fungus that triggers the formation of flower-like structures (pseudoflowers in its Brassicaceae host plant Boecherastricta. Pseudoflowers mimic in shape, color, nectar and scent co-occurring and unrelated flowers such as buttercups. They act to attract insects thereby aiding spore dispersal and sexual reproduction of the rust fungus. Although much ecological research has been performed on P. monoica-induced pseudoflowers, this system has yet to be investigated at the molecular or genomic level. To date, the molecular alterations underlying the development of pseudoflowers and the genes involved have not been described. To address this, we performed gene expression profiling to reveal 256 plant biological processes that are significantly altered in pseudoflowers. Among these biological processes, plant genes involved in cell fate specification, regulation of transcription, reproduction, floral organ development, anthocyanin (major floral pigments and terpenoid biosynthesis (major floral volatile compounds were down-regulated in pseudoflowers. In contrast, plant genes involved in shoot, cotyledon and leaf development, carbohydrate transport, wax biosynthesis, cutin transport and L-phenylalanine metabolism (pathway that results in phenylethanol and phenylacetaldehyde volatile production were up-regulated. These findings point to an extensive reprogramming of host genes by the rust pathogen to induce floral mimicry. We also highlight 31 differentially regulated plant genes that are enriched in the biological processes mentioned above, and are potentially involved in the formation of pseudoflowers. This work illustrates the complex perturbations induced by rust pathogens in their host plants, and provides a starting point for understanding the molecular mechanisms of pathogen-induced floral mimicry.

  15. Taxonomic and life history bias in herbicide resistant weeds: implications for deployment of resistant crops.

    Directory of Open Access Journals (Sweden)

    Jodie S Holt

    Full Text Available Evolved herbicide resistance (EHR is an important agronomic problem and consequently a food security problem, as it jeopardizes herbicide effectiveness and increases the difficulty and cost of weed management. EHR in weeds was first reported in 1970 and the number of cases has accelerated dramatically over the last two decades. Despite 40 years of research on EHR, why some weeds evolve resistance and others do not is poorly understood. Here we ask whether weed species that have EHR are different from weeds in general. Comparing taxonomic and life history traits of weeds with EHR to a control group ("the world's worst weeds", we found weeds with EHR significantly over-represented in certain plant families and having certain life history biases. In particular, resistance is overrepresented in Amaranthaceae, Brassicaceae and Poaceae relative to all weeds, and annuality is ca. 1.5 times as frequent in weeds with EHR as in the control group. Also, for perennial EHR weeds, vegetative reproduction is only 60% as frequent as in the control group. We found the same trends for subsets of weeds with EHR to acetolactate synthase (ALS, photosystem II (PSII, and 5-enolpyruvylshikimate-3-phosphate (EPSP synthase-inhibitor herbicides and with multiple resistance. As herbicide resistant crops (transgenic or not are increasingly deployed in developing countries, the problems of EHR could increase in those countries as it has in the USA if the selecting herbicides are heavily applied and appropriate management strategies are not employed. Given our analysis, we make some predictions about additional species that might evolve resistance.

  16. (RS)-glucoraphanin purified from Tuscan black kale and bioactivated with myrosinase enzyme protects against cerebral ischemia/reperfusion injury in rats.

    Science.gov (United States)

    Giacoppo, Sabrina; Galuppo, Maria; Iori, Renato; De Nicola, Gina Rosalinda; Bramanti, Placido; Mazzon, Emanuela

    2014-12-01

    Ischemic stroke is the result of a transient or permanent reduction in cerebral blood flow caused by the occlusion of a cerebral artery via an embolus or local thrombosis. Restoration of blood supply to ischemic tissues can cause additional damage known as reperfusion injury that can be more damaging than the initial ischemia. This study was aimed to examine the possible neuroprotective role of (RS)-glucoraphanin, bioactivated with myrosinase enzyme (bioactive RS-GRA), in an experimental rat model of brain ischemia/reperfusion injury (I/R). RS-GRA is a thiosaccharidic compound found in Brassicaceae, notably in Tuscan black kale (Brassica oleracea L. var. acephala sabellica). The mechanism underlying the inhibitory effects of bioactive RS-GRA on inflammatory and apoptotic responses, induced by carotid artery occlusion in rats, was carefully examined. Cerebral I/R was induced by the clamping of carotid artery for 1h, followed by 40 min of reperfusion through the release of clamp. Our results have clearly shown that administration of bioactive RS-GRA (10 mg/kg, i.p.) 15 min after ischemia, significantly reduces proinflammatory parameters, such as inducible nitric oxide synthase expression (iNOS), intercellular adhesion molecule 1 (ICAM-1), nuclear factor (NF)-kB traslocation as well as the triggering of the apoptotic pathway (TUNEL and Caspase 3 expression). Taken together our data have shown that bioactive RS-GRA possesses beneficial neuroprotective effects in counteracting the brain damage associated to I/R. Therefore, bioactive RS-GRA, could be a useful treatment in the cerebral ischemic stroke.

  17. Phylogenetic Analysis on SLG and SRK Genes in Brassica and Raphanus

    Institute of Scientific and Technical Information of China (English)

    HE Yu-tang; MA Chao-zhi; FU Ting-dong; TU Jin-xing

    2005-01-01

    S-locus genes were cloned from three Brassica napus and three B. campestris lines by using PCR walking and homologue sequence methods. A phylogenetic gene tree was constructed based on the six cloned genes and fifty-one previously reported SLG/SRK genes of Brassica and Raphanus. The SLGs from R. sativus were dispersed in the phylogenetic tree intermingling with SLG/SRKs from B. oleracea, B. napus and B. campestris. The SLG/SRK genes of class Ⅱ clustered independently in one group. The SLG/SRK genes of class Ⅰ showed to be more divergent than class Ⅱ genes. These results suggested that the divergence of class Ⅰ and class Ⅱ should have occurred before the differentiation of the genera Brassica and Raphanus. In addition, SLG and SRK of the same S haplotypes belonged to the same class. It suggested that class-Ⅰ and class-Ⅱ group divergence occurred first, and then SLG and SRK diverged. The three SC SRK genes from B. napus and B. campestris were grouped into one cluster, displaying difference from the SC SLG of B.oleracea. These three SC SRK genes were close to SI SRK of SI1300, SI271 and guanyou in phylogenetic relationships.These results indicated that SC and SI genes diverged more recently. It is not clear yet whether the differentiation of SC and SI genes was earlier than the differentiation of Brassica and Raphanus. Studies based on more genes are necessary for a comprehensive elucidation of the phylogenetic relationships in Brassicaceae.

  18. Pre-Holocene Origin for the Coronopus navasii Disjunction: Conservation Implications from Its Long Isolation.

    Directory of Open Access Journals (Sweden)

    Sara Martín-Hernanz

    Full Text Available Integration of unexpected discoveries about charismatic species can disrupt their well-established recovery plans, particularly when this requires coordinate actions among the different governments responsible. The Critically Endangered Coronopus navasii (Brassicaceae was considered a restricted endemism to a few Mediterranean temporary ponds in a high mountain range of Southeast Spain, until a new group of populations were discovered 500 km North in 2006. Ten years after this finding, its management has not been accommodated due to limited information of the new populations and administrative inertia. In this study, DNA sequences and species distribution models are used to analyse the origin of the C. navasii disjunction as a preliminary step to reassess its recovery plan. Molecular results placed the disjunction during Miocene-Pleistocene (6.30-0.49 Mya, plastid DNA; 1.45-0.03 Mya, ribosomal DNA, which discards a putative human-mediated origin. In fact, the haplotype network and the low gene flow estimated between disjunct areas suggest long-term isolation. Dispersal is the most likely explanation for the disjunction as interpreted from the highly fragmented distribution projected to the past. Particularly, a northward dispersal from Southeast is proposed since C. navasii haplotype network is connected to the sister-group through the southern haplotype. Although the reassessment of C. navasii conservation status is more optimistic under the new extent of occurrence, its long-term survival may be compromised due to the: (1 natural fragmentation and rarity of the species habitat, (2 genetic isolation between the two disjunct areas, and (3 northward shift of suitable areas under future climate change scenarios. Several ex-situ and in-situ conservation measures are proposed for integrating Central East Spanish populations into the on-going recovery plan, which still only contemplates Southeast populations and therefore does not preserve the

  19. Ontogenic profiling of glucosinolates, flavonoids, and other secondary metabolites in Eruca sativa (salad rocket), Diplotaxis erucoides (wall rocket), Diplotaxis tenuifolia (wild rocket), and Bunias orientalis (Turkish rocket).

    Science.gov (United States)

    Bennett, Richard N; Rosa, Eduardo A S; Mellon, Fred A; Kroon, Paul A

    2006-05-31

    As an influence of the Mediterranean diet, rocket species such as Eruca sativa L., Diplotaxis species, and Bunias orientalis L. are eaten all over the world at different ontogenic stages in salads and soups. They are all species within the plant order Capparales (glucosinolate-containing species), and all are from the family Brassicaceae. Predominantly, the leaves of these species are eaten raw or cooked, although Eruca flowers are also consumed. There is considerable potential with raw plant material for a higher exposure to bioactive phytochemicals such as glucosinolates, their hydrolysis products, and also phenolics, flavonoids, and vitamins such as vitamin C. These compounds are susceptible to ontogenic variation, and the few published studies that have addressed this topic have been inconsistent. Thus, an ontogenic study was performed and all samples were analyzed using a previously developed robust liquid chromatography/mass spectrometry method for the identification and quantification of the major phytochemicals in all tissues of the rocket species. Seeds and roots of both Eruca and Diplotaxis contained predominantly 4-methylthiobutylglucosinolate. Leaves of Eruca and Diplotaxis contained high amounts of 4-mercaptobutylglucosinolate with lower levels of 4-methylthiobutlyglucosinolate and 4-methylsulfinylbutylglucosinolate. Flowers of Eruca and Diplotaxiscontained predominantly 4-methylsulfinylbutyl-glucosinolate. In addition, roots of both Diplotaxisspecies contained 4-hydroxybenzylglucosinolate but 4-hydroxybenzylglucosinolate was absent from roots of Eruca. Seeds and seedlings of all Eruca contained N-heterocyclic compounds but no sinapine, whereas Diplotaxis contained sinapine but not the N-heterocycles. In all tissues of B. orientalis, 4-hydroxybenzylglucosinolate and 4-methylsulfinyl-3-butenylglucosinolate were predominant. All rocket tissues, except roots, contained significant levels of polyglycosylated flavonoids, with/without hydroxycinnamoyl

  20. Functional and evolutionary analysis of DXL1, a non-essential gene encoding a 1-deoxy-D-xylulose 5-phosphate synthase like protein in Arabidopsis thaliana.

    Science.gov (United States)

    Carretero-Paulet, Lorenzo; Cairó, Albert; Talavera, David; Saura, Andreu; Imperial, Santiago; Rodríguez-Concepción, Manuel; Campos, Narciso; Boronat, Albert

    2013-07-15

    The synthesis of 1-deoxy-D-xylulose 5-phosphate (DXP), catalyzed by the enzyme DXP synthase (DXS), represents a key regulatory step of the 2-C-methyl-D-erythritol 4-phosphate (MEP) pathway for isoprenoid biosynthesis. In plants DXS is encoded by small multigene families that can be classified into, at least, three specialized subfamilies. Arabidopsis thaliana contains three genes encoding proteins with similarity to DXS, including the well-known DXS1/CLA1 gene, which clusters within subfamily I. The remaining proteins, initially named DXS2 and DXS3, have not yet been characterized. Here we report the expression and functional analysis of A. thaliana DXS2. Unexpectedly, the expression of DXS2 failed to rescue Escherichia coli and A. thaliana mutants defective in DXS activity. Coherently, we found that DXS activity was negligible in vitro, being renamed as DXL1 following recent nomenclature recommendation. DXL1 is targeted to plastids as DXS1, but shows a distinct expression pattern. The phenotypic analysis of a DXL1 defective mutant revealed that the function of the encoded protein is not essential for growth and development. Evolutionary analyses indicated that DXL1 emerged from DXS1 through a recent duplication apparently specific of the Brassicaceae lineage. Divergent selective constraints would have affected a significant fraction of sites after diversification of the paralogues. Furthermore, amino acids subjected to divergent selection and likely critical for functional divergence through the acquisition of a novel, although not yet known, biochemical function, were identified. Our results provide with the first evidences of functional specialization at both the regulatory and biochemical level within the plant DXS family.

  1. Untargeted Metabolomics Reveals Predominant Alterations in Lipid Metabolism Following Light Exposure in Broccoli Sprouts

    Directory of Open Access Journals (Sweden)

    Mariateresa Maldini

    2015-06-01

    Full Text Available The consumption of vegetables belonging to the family Brassicaceae (e.g., broccoli and cauliflower is linked to a reduced incidence of cancer and cardiovascular diseases. The molecular composition of such plants is strongly affected by growing conditions. Here we developed an unbiased metabolomics approach to investigate the effect of light and dark exposure on the metabolome of broccoli sprouts and we applied such an approach to provide a bird’s-eye view of the overall metabolic response after light exposure. Broccoli seeds were germinated and grown hydroponically for five days in total darkness or with a light/dark photoperiod (16 h light/8 h dark cycle. We used an ultra-performance liquid-chromatography system coupled to an ion-mobility, time-of-flight mass spectrometer to profile the large array of metabolites present in the sprouts. Differences at the metabolite level between groups were analyzed using multivariate statistical analyses, including principal component analysis and correlation analysis. Altered metabolites were identified by searching publicly available and in-house databases. Metabolite pathway analyses were used to support the identification of subtle but significant changes among groups of related metabolites that may have gone unnoticed with conventional approaches. Besides the chlorophyll pathway, light exposure activated the biosynthesis and metabolism of sterol lipids, prenol lipids, and polyunsaturated lipids, which are essential for the photosynthetic machinery. Our results also revealed that light exposure increased the levels of polyketides, including flavonoids, and oxylipins, which play essential roles in the plant’s developmental processes and defense mechanism against herbivores. This study highlights the significant contribution of light exposure to the ultimate metabolic phenotype, which might affect the cellular physiology and nutritional value of broccoli sprouts. Furthermore, this study highlights the

  2. Characterisation of bio-aerosols during dust storm period in N-NW India

    Science.gov (United States)

    Yadav, Sudesh; Chauhan, M. S.; Sharma, Anupam

    Bio-investigations for pollen and spores were performed on dry free-fall dust and PM 10 aerosol samples, collected from three different locations separated by a distance of 600 km, situated in dust storm hit region of N-NW India. Presence of pollen of trees namely Prosopis ( Prosopis juliflora and Prosopis cinearia), Acacia, Syzygium, Pinus, Cedrus, Holoptelea and shrubs namely Ziziphus, Ricinus, Ephedra and members of Fabaceae, Oleaceae families was recorded but with varying proportions in the samples of different locations. Poaceae, Chenopodiaceae/Amaranthaceae, Caryophyllaceae, Brassicaceae and Cyperaceae (sedges) were some of the herb pollen identified in the samples. Among the fungal spores Nigrospora was seen in almost all samples. Nigrospora is a well known allergen and causes health problems. The concentration of trees and shrubs increases in the windward direction just as the climate changes from hot arid to semiarid. The higher frequency of grasses (Poaceae) or herbs could either be a result of the presence of these herbs in the sampling area and hence the higher production of pollen/spores or due to the resuspension from the exposed surface by the high-intensity winds. But we cannot ascertain the exact process at this stage. The overall similarity in the pollen and spore assemblage in our dust samples indicates a common connection or source(s) to the dust in this region. Presence of the pollen of the species of Himalayan origin in our entire samples strongly point towards a Himalayan connection, could be direct or indirect, to the bioaerosols and hence dust in N-NW India. In order to understand the transport path and processes involved therein, present study needs further extension with more number of samples and with reference to meteorological parameters.

  3. Taxonomic and life history bias in herbicide resistant weeds: implications for deployment of resistant crops.

    Science.gov (United States)

    Holt, Jodie S; Welles, Shana R; Silvera, Katia; Heap, Ian M; Heredia, Sylvia M; Martinez-Berdeja, Alejandra; Palenscar, Kai T; Sweet, Lynn C; Ellstrand, Norman C

    2013-01-01

    Evolved herbicide resistance (EHR) is an important agronomic problem and consequently a food security problem, as it jeopardizes herbicide effectiveness and increases the difficulty and cost of weed management. EHR in weeds was first reported in 1970 and the number of cases has accelerated dramatically over the last two decades. Despite 40 years of research on EHR, why some weeds evolve resistance and others do not is poorly understood. Here we ask whether weed species that have EHR are different from weeds in general. Comparing taxonomic and life history traits of weeds with EHR to a control group ("the world's worst weeds"), we found weeds with EHR significantly over-represented in certain plant families and having certain life history biases. In particular, resistance is overrepresented in Amaranthaceae, Brassicaceae and Poaceae relative to all weeds, and annuality is ca. 1.5 times as frequent in weeds with EHR as in the control group. Also, for perennial EHR weeds, vegetative reproduction is only 60% as frequent as in the control group. We found the same trends for subsets of weeds with EHR to acetolactate synthase (ALS), photosystem II (PSII), and 5-enolpyruvylshikimate-3-phosphate (EPSP) synthase-inhibitor herbicides and with multiple resistance. As herbicide resistant crops (transgenic or not) are increasingly deployed in developing countries, the problems of EHR could increase in those countries as it has in the USA if the selecting herbicides are heavily applied and appropriate management strategies are not employed. Given our analysis, we make some predictions about additional species that might evolve resistance.

  4. Meristem identity and phyllotaxis in inflorescence development

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    Madelaine Elisabeth Bartlett

    2014-10-01

    Full Text Available Inflorescence morphology is incredibly diverse. This diversity of form has been a fruitful source of inquiry for plant morphologists for more than a century. Work in the grasses (Poaceae, the tomato family (Solanaceae, and Arabidopsis (Brassicaceae has led to a richer understanding of the molecular genetics underlying this diversity. The character of individual meristems, a combination of the number (determinacy and nature (identity of the products a meristem produces, is key in the development of plant form. A framework that describes inflorescence development in terms of shifting meristem identities has emerged and garnered empirical support in a number of model systems. We discuss this framework and highlight one important aspect of meristem identity that is often considered in isolation, phyllotaxis. Phyllotaxis refers to the arrangement of lateral organs around a central axis. The development and evolution of phyllotaxis in the inflorescence remains underexplored, but recent work analyzing early inflorescence development in the grasses identified an evolutionary shift in primary branch phyllotaxis in the Pooideae. We discuss the evidence for an intimate connection between meristem identity and phyllotaxis in both the inflorescence and vegetative shoot, and touch on what is known about the establishment of phyllotactic patterns in the meristem. Localized auxin maxima are instrumental in determining the position of lateral primordia. Upstream factors that regulate the position of these maxima remain unclear, and how phyllotactic patterns change over the course of a plant’s lifetime and evolutionary time, is largely unknown. A more complete understanding of the molecular underpinnings of phyllotaxis and architectural diversity in inflorescences will require capitalizing on the extensive resources available in existing genetic systems, and developing new model systems that more fully represent the diversity of plant morphology.

  5. Meristem identity and phyllotaxis in inflorescence development.

    Science.gov (United States)

    Bartlett, Madelaine E; Thompson, Beth

    2014-01-01

    Inflorescence morphology is incredibly diverse. This diversity of form has been a fruitful source of inquiry for plant morphologists for more than a century. Work in the grasses (Poaceae), the tomato family (Solanaceae), and Arabidopsis thaliana (Brassicaceae) has led to a richer understanding of the molecular genetics underlying this diversity. The character of individual meristems, a combination of the number (determinacy) and nature (identity) of the products a meristem produces, is key in the development of plant form. A framework that describes inflorescence development in terms of shifting meristem identities has emerged and garnered empirical support in a number of model systems. We discuss this framework and highlight one important aspect of meristem identity that is often considered in isolation, phyllotaxis. Phyllotaxis refers to the arrangement of lateral organs around a central axis. The development and evolution of phyllotaxis in the inflorescence remains underexplored, but recent work analyzing early inflorescence development in the grasses identified an evolutionary shift in primary branch phyllotaxis in the Pooideae. We discuss the evidence for an intimate connection between meristem identity and phyllotaxis in both the inflorescence and vegetative shoot, and touch on what is known about the establishment of phyllotactic patterns in the meristem. Localized auxin maxima are instrumental in determining the position of lateral primordia. Upstream factors that regulate the position of these maxima remain unclear, and how phyllotactic patterns change over the course of a plant's lifetime and evolutionary time, is largely unknown. A more complete understanding of the molecular underpinnings of phyllotaxis and architectural diversity in inflorescences will require capitalizing on the extensive resources available in existing genetic systems, and developing new model systems that more fully represent the diversity of plant morphology.

  6. Chemical composition and biological activities of Eruca vesicaria subsp. longirostris essential oils.

    Science.gov (United States)

    Omri Hichri, Amel; Mosbah, Habib; Majouli, Kaouther; Besbes Hlila, Malek; Ben Jannet, Hichem; Flamini, Guido; Aouni, Mahjoub; Selmi, Boulbaba

    2016-10-01

    Context To date, there are no reports to validate the Tunisian traditional and folklore claims of Eruca vesicaria (L) Cav. subsp. longirostris (Brassicaceae) for the treatment of disease. Objective Investigation of the chemical composition antimicrobial and antioxidant activity of essential oils from Eruca longirostris leaves, stems, roots and fruits. Materials and methods The essential oils of E. longirostris from leaves, stems, roots and fruits were obtained after 4 h of hydrodistillation. Chemical compositions were determined using a combination of GC/FID and GC/MS. The in vitro antimicrobial activity of the volatile constituents of E. longirostris was performed in sterile 96-well microplates against three Gram-positive, four Gram-negative bacteria and one strain as yeast. The minimum inhibitory concentration (MIC) and minimum bactericidal concentration values were reported. Furthermore, the antioxidant activity was evaluated by DPPH and ABTS assays. Results The main compound for fruits, stems and roots was the erucin (96.6%, 85.3% and 83.7%, respectively), while β-elemene (35.7%), hexahydrofarnesylacetone (23.9%), (E)-β-damascone (15.4%), erucin (10.6%) and α-longipinene (9.6%) constituted the major compounds in the essential oil of the leaves. The experimental results showed that in all tests, essential oil of fruits showed the better antioxidant activity than the others. On the other hand, the oils of stems, fruits and roots showed significant antimicrobial activity with MIC values ranging from 0.125 to 0.31 mg/mL against Candida species, Gram-positive and Gram-negative bacteria, mainly Salmonella enterica. Conclusions The present results indicate that essential oils of E. longirostris can be used as a source of erucin.

  7. Genome-wide identification of aquaporin encoding genes in Brassica oleracea and their phylogenetic sequence comparison to Brassica crops and Arabidopsis.

    Science.gov (United States)

    Diehn, Till A; Pommerrenig, Benjamin; Bernhardt, Nadine; Hartmann, Anja; Bienert, Gerd P

    2015-01-01

    Aquaporins (AQPs) are essential channel proteins that regulate plant water homeostasis and the uptake and distribution of uncharged solutes such as metalloids, urea, ammonia, and carbon dioxide. Despite their importance as crop plants, little is known about AQP gene and protein function in cabbage (Brassica oleracea) and other Brassica species. The recent releases of the genome sequences of B. oleracea and Brassica rapa allow comparative genomic studies in these species to investigate the evolution and features of Brassica genes and proteins. In this study, we identified all AQP genes in B. oleracea by a genome-wide survey. In total, 67 genes of four plant AQP subfamilies were identified. Their full-length gene sequences and locations on chromosomes and scaffolds were manually curated. The identification of six additional full-length AQP sequences in the B. rapa genome added to the recently published AQP protein family of this species. A phylogenetic analysis of AQPs of Arabidopsis thaliana, B. oleracea, B. rapa allowed us to follow AQP evolution in closely related species and to systematically classify and (re-) name these isoforms. Thirty-three groups of AQP-orthologous genes were identified between B. oleracea and Arabidopsis and their expression was analyzed in different organs. The two selectivity filters, gene structure and coding sequences were highly conserved within each AQP subfamily while sequence variations in some introns and untranslated regions were frequent. These data suggest a similar substrate selectivity and function of Brassica AQPs compared to Arabidopsis orthologs. The comparative analyses of all AQP subfamilies in three Brassicaceae species give initial insights into AQP evolution in these taxa. Based on the genome-wide AQP identification in B. oleracea and the sequence analysis and reprocessing of Brassica AQP information, our dataset provides a sequence resource for further investigations of the physiological and molecular functions of

  8. The Woody-Preferential Gene EgMYB88 Regulates the Biosynthesis of Phenylpropanoid-Derived Compounds in Wood

    Science.gov (United States)

    Soler, Marçal; Plasencia, Anna; Lepikson-Neto, Jorge; Camargo, Eduardo L. O.; Dupas, Annabelle; Ladouce, Nathalie; Pesquet, Edouard; Mounet, Fabien; Larbat, Romain; Grima-Pettenati, Jacqueline

    2016-01-01

    Comparative phylogenetic analyses of the R2R3-MYB transcription factor family revealed that five subgroups were preferentially found in woody species and were totally absent from Brassicaceae and monocots (Soler et al., 2015). Here, we analyzed one of these subgroups (WPS-I) for which no gene had been yet characterized. Most Eucalyptus members of WPS-I are preferentially expressed in the vascular cambium, the secondary meristem responsible for tree radial growth. We focused on EgMYB88, which is the most specifically and highly expressed in vascular tissues, and showed that it behaves as a transcriptional activator in yeast. Then, we functionally characterized EgMYB88 in both transgenic Arabidopsis and poplar plants overexpressing either the native or the dominant repression form (fused to the Ethylene-responsive element binding factor-associated Amphiphilic Repression motif, EAR). The transgenic Arabidopsis lines had no phenotype whereas the poplar lines overexpressing EgMYB88 exhibited a substantial increase in the levels of the flavonoid catechin and of some salicinoid phenolic glycosides (salicortin, salireposide, and tremulacin), in agreement with the increase of the transcript levels of landmark biosynthetic genes. A change in the lignin structure (increase in the syringyl vs. guaiacyl, S/G ratio) was also observed. Poplar lines overexpressing the EgMYB88 dominant repression form did not show a strict opposite phenotype. The level of catechin was reduced, but the levels of the salicinoid phenolic glycosides and the S/G ratio remained unchanged. In addition, they showed a reduction in soluble oligolignols containing sinapyl p-hydroxybenzoate accompanied by a mild reduction of the insoluble lignin content. Altogether, these results suggest that EgMYB88, and more largely members of the WPS-I group, could control in cambium and in the first layers of differentiating xylem the biosynthesis of some phenylpropanoid-derived secondary metabolites including lignin. PMID

  9. Fungal root endophyte associations of plants endemic to the Pamir Alay Mountains of Central Asia.

    Science.gov (United States)

    Zubek, Szymon; Nobis, Marcin; Błaszkowski, Janusz; Mleczko, Piotr; Nowak, Arkadiusz

    2011-06-01

    The fungal root endophyte associations of 16 species from 12 families of plants endemic to the Pamir Alay Mountains of Central Asia are presented. The plants and soil samples were collected in Zeravshan and Hissar ranges within the central Pamir Alay mountain system. Colonization by arbuscular mycorrhizal fungi (AMF) was found in 15 plant species; in 8 species it was of the Arum type and in 4 of the Paris type, while 3 taxa revealed intermediate arbuscular mycorrhiza (AM) morphology. AMF colonization was found to be absent only in Matthiola integrifolia, the representative of the Brassicaceae family. The AM status and morphology are reported for the first time for all the species analyzed and for the genera Asyneuma, Clementsia, and Eremostachys. Mycelia of dark septate endophytes (DSE) accompanied the AMF colonization in ten plant species. The frequency of DSE occurrence in the roots was low in all the plants, with the exception of Spiraea baldschuanica. However, in the case of both low and higher occurrence, the percentage of DSE root colonization was low. Moreover, the sporangia of Olpidium spp. were sporadically found inside the root epidermal cells of three plant species. Seven AMF species (Glomeromycota) found in the trap cultures established with soils surrounding roots of the plants being studied were reported for the first time from this region of Asia. Our results provide information that might well be of use to the conservation and restoration programmes of these valuable plant species. The potential application of beneficial root-inhabiting fungi in active plant protection projects of rare, endemic and endangered plants is discussed.

  10. Dispersal limitation does not control high elevational distribution of alien plant species in the southern Sierra Nevada, California

    Science.gov (United States)

    Rundel, Philip W.; Keeley, Jon E.

    2016-01-01

    Patterns of elevational distribution of alien plant species in the southern Sierra Nevada of California were used to test the hypothesis that alien plant species invading high elevations around the world are typically climate generalists capable of growing across a wide elevational range. The Sierra Nevada has been heavily impacted for more than a century and a half, first by heavy grazing up into high elevation meadows, followed by major logging, and finally, by impacts associated with recreational use. The comparative elevational patterns of distribution and growth form were compared for native and alien plant species in the four families (Asteraceae, Brassicaceae, Fabaceae, and Poaceae) that contribute the majority of naturalized aliens in the study area. The distribution of realized climatic niche breadth, as measured by elevational range of occurrence, was virtually identical for alien and native species, with both groups showing a roughly Gaussian distribution peaking with species whose range covers a span of 1500–1999 m. In contrast to alien species, which only rarely occurred at higher elevations, native species showed a distribution of upper elevation limits peaking at 3000–3499 m, an elevation that corresponds to the zone of upper montane and subalpine forests. Consistent with a hypothesis of abiotic limitations, only a few alien species have been ecologically successful invaders at subalpine and alpine elevations above 2500 m. The low diversity of aliens able to become established in these habitats is unlikely due to dispersal limitations, given the long history of heavy grazing pressure at high elevations across this region. Instead, this low diversity is hypothesized to be a function of life history traits and multiple abiotic stresses that include extremes of cold air and soil temperature, heavy snowfall, short growing seasons, and low resource availability. These findings have significant implications for resource managers.

  11. Performance of generalist and specialist herbivores and their endoparasitoids differs on cultivated and wild Brassica populations.

    Science.gov (United States)

    Gols, Rieta; Bukovinszky, Tibor; van Dam, Nicole M; Dicke, Marcel; Bullock, James M; Harvey, Jeffrey A

    2008-02-01

    Through artificial selection, domesticated plants often contain modified levels of primary and secondary metabolites compared to their wild progenitors. It is hypothesized that the changed chemistry of cultivated plants will affect the performance of insects associated with these plants. In this paper, the development of several specialist and generalist herbivores and their endoparasitoids were compared when reared on a wild and cultivated population of cabbage, Brassica oleracea, and a recently established feral Brassica species. Irrespective of insect species or the degree of dietary specialization, herbivores and parasitoids developed most poorly on the wild population. For the specialists, plant population influenced only development time and adult body mass, whereas for the generalists, plant populations also affected egg-to-adult survival. Two parasitoid species, a generalist (Diadegma fenestrale) and a specialist (D. semiclausum), were reared from the same host (Plutella xylostella). Performance of D. semiclausum was closely linked to that of its host, whereas the correlation between survival of D. fenestrale and host performance was less clear. Plants in the Brassicaceae characteristically produce defense-related glucosinolates (GS). Levels of GS in leaves of undamaged plants were significantly higher in plants from the wild population than from the domesticated populations. Moreover, total GS concentrations increased significantly in wild plants after herbivory, but not in domesticated or feral plants. The results of this study reveal that a cabbage cultivar and plants from a wild cabbage population exhibit significant differences in quality in terms of their effects on the growth and development of insect herbivores and their natural enemies. Although cultivated plants have proved to be model systems in agroecology, we argue that some caution should be applied to evolutionary explanations derived from studies on domesticated plants, unless some knowledge

  12. Molecular cloning and characterization of novel cystatin gene in leaves Cakile maritima halophyte.

    Science.gov (United States)

    Megdiche, Wided; Passaquet, Chantal; Zourrig, Walid; Zuily Fodil, Yasmine; Abdelly, Chedly

    2009-05-01

    Cakile maritima (Brassicaceae) is a halophyte that thrives on dunes along Mediterranean seashores, with high tolerance to salty and dry environments. We have previously shown that there is great morphological and physiological diversity between ecotypes. We investigated the expression of cysteine protease inhibitor (cystatin) genes in the response to hydric and saline constraints, as cystatins are known to participate in the response to environmental constraints in plants. We isolated, from C. maritime, a new cystatin cDNA (CmC) that encodes a 221 amino acid protein with a calculated molecular mass of 25 kDa. It displays a moderate-to-high amino acid sequence similarity with previously reported phytocystatin genes. The predicted protein is hydrophilic, with only one hydrophobic region, just at its N-terminus, and a calculated isoelectric point of 6.7. Sequence analysis revealed a monocystatin structure with one cystatin-like domain. The predicted protein CmC contains the main conserved motifs characteristic of the plant cystatins, and a putative site of phosphorylation by casein kinase II (TPSD). As some cystatins, it contains a C-terminal extension of 106 amino acid residues, with several conserved cystatin motifs. The expression was constitutive in non-stressed plants, with different levels between the ecotypes, and without apparent relation to the climatic area of origin. Augmented expression was observed under severe salinity except in the ecotype from the arid region. Water deficit also increased CmC expression in two ecotypes, with the highest value observed in the ecotype from the humid region. These results indicate that C. maritima responds to high salinity and water deficit by expressing a cystatin gene that is a known component of defense against abiotic constraints or biotic aggression and survival machinery.

  13. Male Phyllotreta striolata (F.) produce an aggregation pheromone: identification of male-specific compounds and interaction with host plant volatiles.

    Science.gov (United States)

    Beran, Franziska; Mewis, Inga; Srinivasan, Ramasamy; Svoboda, Jiří; Vial, Christian; Mosimann, Hervé; Boland, Wilhelm; Büttner, Carmen; Ulrichs, Christian; Hansson, Bill S; Reinecke, Andreas

    2011-01-01

    The chrysomelid beetle Phyllotreta striolata is an important pest of Brassicaceae in Southeast Asia and North America. Here, we identified the aggregation pheromone of a population of P. striolata from Taiwan, and host plant volatiles that interact with the pheromone. Volatiles emitted by feeding male P. striolata attracted males and females in the field. Headspace volatile analyses revealed that six sesquiterpenes were emitted specifically by feeding males. Only one of these, however, elicited an electrophysiological response from antennae of both sexes. A number of host plant volatiles, e.g., 1-hexanol, (Z)-3-hexen-1-ol, and the glucosinolate hydrolysis products allyl isothiocyanate (AITC), 3-butenyl isothiocyanate, and 4-pentenyl isothiocyanate also elicited clear responses from the antenna. The active male-specific compound was identified as (+)-(6R,7S)-himachala-9,11-diene by chiral stationary phase gas-chromatography with coupled mass spectrometry, and by comparison with reference samples from Abies nordmanniana, which is known to produce the corresponding enantiomer. The pheromone compound was synthesized starting from (-)-α-himachalene isolated from Cedrus atlantica. Under field conditions, the activity of the synthetic pheromone required concomitant presence of the host plant volatile allyl isothiocyanate. However, both synthetic (+)-(6R,7S)-himachala-9,11-diene alone and in combination with AITC were attractive in a two-choice laboratory assay devoid of other natural olfactory stimuli. We hypothesize that P. striolata adults respond to the pheromone only if specific host volatiles are present. In the same laboratory set up, more beetles were attracted by feeding males than by the synthetic stimuli. Thus, further research will be necessary to reveal the components of a more complex blend of host or male-produced semiochemicals that might enhance trap attractiveness in the field.

  14. Identification of Flowering-Related Genes Responsible for Differences in Bolting Time between Two Radish Inbred Lines

    Science.gov (United States)

    Jung, Won Yong; Park, Hyun Ji; Lee, Areum; Lee, Sang Sook; Kim, Youn-Sung; Cho, Hye Sun

    2016-01-01

    Late bolting after cold exposure is an economically important characteristic of radish (Raphanus sativus L.), an important Brassicaceae root vegetable crop. However, little information is available regarding the genes and pathways that govern flowering time in this species. We performed high-throughput RNA sequencing analysis to elucidate the molecular mechanisms that determine the differences in flowering times between two radish lines, NH-JS1 (late bolting) and NH-JS2 (early bolting). In total, 71,188 unigenes were identified by reference-guided assembly, of which 309, 788, and 980 genes were differentially expressed between the two inbred lines after 0, 15, and 35 days of vernalization, respectively. Among these genes, 218 homologs of Arabidopsis flowering-time (Ft) genes were identified in the radish, and 49 of these genes were differentially expressed between the two radish lines in the presence or absence of vernalization treatment. Most of the Ft genes up-regulated in NH-JS1 vs. NH-JS2 were repressors of flowering, such as RsFLC, consistent with the late-bolting phenotype of NH-JS1. Although, the functions of genes down-regulated in NH-JS1 were less consistent with late-bolting characteristics than the up-regulated Ft genes, several Ft enhancer genes, including RsSOC1, a key floral integrator, showed an appropriate expression to the late-bolting phenotype. In addition, the patterns of gene expression related to the vernalization pathway closely corresponded with the different bolting times of the two inbred lines. These results suggest that the vernalization pathway is conserved between radish and Arabidopsis. PMID:28018383

  15. Identification of flowering-related genes responsible for differences in bolting time between two radish inbred lines

    Directory of Open Access Journals (Sweden)

    Hye Sun Cho

    2016-12-01

    Full Text Available Late bolting after cold exposure is an economically important characteristic of radish (Raphanus sativus L., an important Brassicaceae root vegetable crop. However, little information is available regarding the genes and pathways that govern flowering time in this species. We performed high-throughput RNA sequencing analysis to elucidate the molecular mechanisms that determine the differences in flowering times between two radish lines, NH-JS1 (late bolting and NH-JS2 (early bolting. In total, 71,188 unigenes were identified by reference-guided assembly, of which 309, 788, and 980 genes were differentially expressed between the two inbred lines after 0, 15, and 35 days of vernalization, respectively. Among these genes, 218 homologs of Arabidopsis flowering-time (Ft genes were identified in the radish, and 49 of these genes were differentially expressed between the two radish lines in the presence or absence of vernalization treatment. Most of the Ft genes up-regulated in NH-JS1 vs NH-JS2 were repressors of flowering, such as RsFLC, consistent with the late-bolting phenotype of NH-JS1. Although the functions of genes down-regulated in NH-JS1 were less consistent with late-bolting characteristics than the up-regulated Ft genes, several Ft enhancer genes, including RsSOC1, a key floral integrator, showed an appropriate expression to the late-bolting phenotype. In addition, the patterns of gene expression related to the vernalization pathway closely corresponded with the different bolting times of the two inbred lines. These results suggest that the vernalization pathway is conserved between radish and Arabidopsis.

  16. Genomic treasure troves: complete genome sequencing of herbarium and insect museum specimens.

    Directory of Open Access Journals (Sweden)

    Martijn Staats

    Full Text Available Unlocking the vast genomic diversity stored in natural history collections would create unprecedented opportunities for genome-scale evolutionary, phylogenetic, domestication and population genomic studies. Many researchers have been discouraged from using historical specimens in molecular studies because of both generally limited success of DNA extraction and the challenges associated with PCR-amplifying highly degraded DNA. In today's next-generation sequencing (NGS world, opportunities and prospects for historical DNA have changed dramatically, as most NGS methods are actually designed for taking short fragmented DNA molecules as templates. Here we show that using a standard multiplex and paired-end Illumina sequencing approach, genome-scale sequence data can be generated reliably from dry-preserved plant, fungal and insect specimens collected up to 115 years ago, and with minimal destructive sampling. Using a reference-based assembly approach, we were able to produce the entire nuclear genome of a 43-year-old Arabidopsis thaliana (Brassicaceae herbarium specimen with high and uniform sequence coverage. Nuclear genome sequences of three fungal specimens of 22-82 years of age (Agaricus bisporus, Laccaria bicolor, Pleurotus ostreatus were generated with 81.4-97.9% exome coverage. Complete organellar genome sequences were assembled for all specimens. Using de novo assembly we retrieved between 16.2-71.0% of coding sequence regions, and hence remain somewhat cautious about prospects for de novo genome assembly from historical specimens. Non-target sequence contaminations were observed in 2 of our insect museum specimens. We anticipate that future museum genomics projects will perhaps not generate entire genome sequences in all cases (our specimens contained relatively small and low-complexity genomes, but at least generating vital comparative genomic data for testing (phylogenetic, demographic and genetic hypotheses, that become increasingly more

  17. The developmental race between maturing host plants and their butterfly herbivore - the influence of phenological matching and temperature.

    Science.gov (United States)

    Posledovich, Diana; Toftegaard, Tenna; Wiklund, Christer; Ehrlén, Johan; Gotthard, Karl

    2015-11-01

    Interactions between herbivorous insects and their host plants that are limited in time are widespread. Therefore, many insect-plant interactions result in a developmental race, where herbivores need to complete their development before plants become unsuitable, while plants strive to minimize damage from herbivores by outgrowing them. When spring phenologies of interacting species change asymmetrically in response to climate warming, there will be a change in the developmental state of host plants at the time of insect herbivore emergence. In combination with altered temperatures during the subsequent developmental period, this is likely to affect interaction strength as well as fitness of interacting species. Here, we experimentally explore whether the combined effect of phenological matching and thermal conditions influence the outcome of an insect-host interaction. We manipulated both developmental stages of the host plants at the start of the interaction and temperature during the subsequent developmental period in a model system of a herbivorous butterfly, Anthocharis cardamines, and five of its Brassicaceae host plant species. Larval performance characteristics were favoured by earlier stages of host plants at oviposition as well as by higher developmental temperatures on most of the host species. The probability of a larva needing a second host plant covered the full range from no influence of either phenological matching or temperature to strong effects of both factors, and complex interactions between them. The probability of a plant outgrowing a larva was dependent only on the species identity. This study demonstrates that climatic variation can influence the outcome of consumer-resource interactions in multiple ways and that its effects differ among host plant species. Therefore, climate warming is likely to change the temporal match between larval and plant development in some plant species, but not in the others. This is likely to have important

  18. Glucosinolates in collard greens grown under three soil management practices.

    Science.gov (United States)

    Antonious, George F

    2015-01-01

    Glucosinolates (GSLs, β-D-thioglucoside-N-hydroxysulfates) are polar compounds present in varying amounts in members of the Brassicaceae family. They suppress soil-borne pests due to the biofumigant properties of the highly toxic isothiocyanates present in Brassica vegetables. The objectives of this investigation were to: (1) assess variation in GSLs concentrations among collard plants grown under three soil management practices: sewage sludge (SS) mixed with native soil, chicken manure (CM) mixed with native soil, and no-mulch (NM) native soil, (2) quantify GSLs concentrations in collard roots, leaves, and stems at harvest for potential use of their crude extracts in plant protection, and (3) assess myrosinase activity in soil amended with CM and SS mixed with native soil. Separation of GSLs was accomplished by adsorption on a DEAE-Sephadex ion exchange resin using disposable pipette tips filled with DEAE, a weak base, with a net positive charge when ionized and exchange anions such as GSLs (hydrophilic plant secondary metabolites). Quantification of total GSLs was based on inactivation of collard endogenous myrosinase and liberation of the glucose moiety from the GSLs molecule by addition of standardized myrosinase and colorimetric determination of the liberated glucose moiety. Across all treatments, SS and CM increased soil organic matter content from 2.2% in native soil to 4.2 and 6.5%, respectively. GSLs concentrations were significantly greater in collard leaves (30.9 µmoles g(-1) fresh weight) compared to roots and stems (7.8 and 1.2 µmoles g(-1) fresh weight), respectively. Leaves of collard grown in soil amended with SS contained the greatest concentrations of GSLs compared to leaves of plants grown in CM and NM treatments. Accordingly, leaves of collard plants grown in soil amended with SS could play a significant role in sustainable agriculture as alternative tools for soil-borne disease management in conventional and organic agriculture.

  19. Plant defence responses in oilseed rape MINELESS plants after attack by the cabbage moth Mamestra brassicae.

    Science.gov (United States)

    Ahuja, Ishita; van Dam, Nicole Marie; Winge, Per; Trælnes, Marianne; Heydarova, Aysel; Rohloff, Jens; Langaas, Mette; Bones, Atle Magnar

    2015-02-01

    The Brassicaceae family is characterized by a unique defence mechanism known as the 'glucosinolate-myrosinase' system. When insect herbivores attack plant tissues, glucosinolates are hydrolysed by the enzyme myrosinase (EC 3.2.1.147) into a variety of degradation products, which can deter further herbivory. This process has been described as 'the mustard oil bomb'. Additionally, insect damage induces the production of glucosinolates, myrosinase, and other defences. Brassica napus seeds have been genetically modified to remove myrosinase-containing myrosin cells. These plants are termed MINELESS because they lack myrosin cells, the so-called toxic mustard oil mines. Here, we examined the interaction between B. napus wild-type and MINELESS plants and the larvae of the cabbage moth Mamestra brassicae. No-choice feeding experiments showed that M. brassicae larvae gained less weight and showed stunted growth when feeding on MINELESS plants compared to feeding on wild-type plants. M. brassicae feeding didn't affect myrosinase activity in MINELESS plants, but did reduce it in wild-type seedlings. M. brassicae feeding increased the levels of indol-3-yl-methyl, 1-methoxy-indol-3-yl-methyl, and total glucosinolates in both wild-type and MINELESS seedlings. M. brassicae feeding affected the levels of glucosinolate hydrolysis products in both wild-type and MINELESS plants. Transcriptional analysis showed that 494 and 159 genes were differentially regulated after M. brassicae feeding on wild-type and MINELESS seedlings, respectively. Taken together, the outcomes are very interesting in terms of analysing the role of myrosin cells and the glucosinolate-myrosinase defence system in response to a generalist cabbage moth, suggesting that similar studies with other generalist or specialist insect herbivores, including above- and below-ground herbivores, would be useful.

  20. ORIGEN GEOGRÁFICO Y BOTÁNICO DE MIELES DE Apis mellifera (APIDAE EN CUATRO DEPARTAMENTOS DE COLOMBIA

    Directory of Open Access Journals (Sweden)

    GUIOMAR NATES-PARRA

    2013-01-01

    Full Text Available El objetivo de este trabajo fue determinar marcadores palinológicos que permitieran caracterizar el origen geográfico y botánico de mieles provenientes de los departamentos de Boyacá, Cundinamarca, Santander y Magdalena. Se realizaron análisis meli- sopalinológicos de 184 muestras de miel procedentes de 131 apiarios. Se determinaron diferencias significativas entre tipos de mieles mediante un análisis discriminante y comparando la composición de especies entre las muestras. En total se encontraron 297 especies distribuidas en 69 familias, dentro de las cuales las más representativas fueron Mimosa sp., Cecropia sp., Eucalyptus sp., Piper sp. y Quercus humboldtii. Las familias más importantes fueron Fabaceae, Asteraceae,Myrtaceae, Rubiaceae, Fagaceae, y Melastomataceae. Se lograron determinar seis grupos de mieles diferenciadas por su origen geográfico: altiplano Cundiboyacense, Medio Chicamocha, Sumapaz, Bajo Chicamocha, Sierra Nevada de Santa Marta y provincia Comunera; también se encontraron diferencias entre las mieles de las regiones andinas y subandinas. Dentro de los tipos de mieles diferenciadas por origen botánico predominaron las mieles monoflorales de Trifolium pratense, Coffea arabica, Eucalyptus sp., Inga sp. y Heliocarpus americanus, mieles oligoflorales de asteráceas y mezclas de mielato de Q. humboldtii y néctar floral (Eucalyptus sp. tipo Brassicaceae, asteráceas. La información de este trabajo junto con la obtenida en análisis fisicoquímicos y sensoriales servirá de base para que los apicultores puedan solicitar la denominación de origen de estas mieles.

  1. Reasoned opinion on the modification of the existing MRLs for fluopicolide in various vegetable crops

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    European Food Safety Authority

    2012-09-01

    Full Text Available

    In accordance with Article 6 of Regulation (EC No 396/2005, the United Kingdom, herewith referred to as the evaluating Member State (EMS-UK, received an application from Bayer CropScience to set import tolerances for the active substance fluopicolide on carrots, radishes and sugar beet. In accordance with Article 6 of Regulation (EC No 396/2005, Italy, hereafter referred to as the evaluating Member State (EMS-IT, received an application from Bayer CropScience to modify the existing MRLs for the active substance fluopicolide on certain leaf vegetables and herbs. Both the United Kingdom and Italy drafted an evaluation report in accordance with Article 8 of Regulation (EC No 396/2005, which was submitted to the European Commission and forwarded to EFSA. EFSA combined both applications in one reasoned opinion. According to EFSA the data are sufficient to derive the following MRL proposals: 0.2 mg/kg for radishes and carrots; 0.15 mg/kg for sugar beet; 9 mg/kg for the crop group of lettuce and other salad plants, including Brassicaceae and for the crop group of herbs; 4 mg/kg for the crop group of spinach and similar (leaves. Adequate analytical enforcement methods are available to control the residues of fluopicolide in the crops under consideration. Based on the risk assessment results, EFSA concludes that the intended uses of fluopicolide on the crops under consideration, except the more critical indoor use and outdoor use in Southern Europe on scarole, will not result in a consumer exposure exceeding the toxicological reference values of fluopicolide and the metabolite M-01 and therefore is unlikely to pose a public health risk. For scarole, EFSA proposes a MRL derived from a less critical use, which is not leading to a consumer concern.

  2. GORDITA (AGL63) is a young paralog of the Arabidopsis thaliana B(sister) MADS box gene ABS (TT16) that has undergone neofunctionalization.

    Science.gov (United States)

    Erdmann, Robert; Gramzow, Lydia; Melzer, Rainer; Theissen, Günter; Becker, Annette

    2010-09-01

    MIKC-type MADS domain proteins are key regulators of flower development in angiosperms. B(sister) genes constitute a clade with a close relationship to class B floral homeotic genes, and have been conserved for more than 300 million years. The loss-of-function phenotype of the A. thaliana B(sister) gene ABS is mild: mutants show reduced seed coloration and defects in endothelium development. This study focuses on GORDITA (GOA, formerly known as AGL63), the most closely related paralog of ABS in A. thaliana, which is thought to act redundantly with ABS. Phylogenetic trees reveal that the duplication leading to ABS and GOA occurred during diversification of the Brassicaceae, and further analyses show that GOA has evolved under relaxed selection pressure. The knockdown phenotype of GOA suggests a role for this gene in fruit longitudinal growth, while over-expression of GOA results in disorganized floral structure and addition of carpel-like features to sepals. Given the phylogeny and function of other B(sister) genes, our data suggest that GOA has evolved a new function as compared to ABS. Protein analysis reveals that the GOA-specific 'deviant' domain is required for protein dimerization, in contrast to other MIKC-type proteins that require the K domain for dimerization. Moreover, no shared protein interaction partners for ABS and GOA could be identified. Our experiments indicate that modification of a protein domain and a shift in expression pattern can lead to a novel gene function in a relatively short time, and highlight the molecular mechanism by which neofunctionalization following gene duplication can be achieved.

  3. MtVRN2 is a Polycomb VRN2-like gene which represses the transition to flowering in the model legume Medicago truncatula.

    Science.gov (United States)

    Jaudal, Mauren; Zhang, Lulu; Che, Chong; Hurley, Daniel G; Thomson, Geoffrey; Wen, Jiangqi; Mysore, Kirankumar S; Putterill, Joanna

    2016-04-01

    Optimising the timing of flowering contributes to successful sexual reproduction and yield in agricultural plants. FLOWERING LOCUS T (FT) genes, first identified in Arabidopsis thaliana (Arabidopsis), promote flowering universally, but the upstream flowering regulatory pathways can differ markedly among plants. Flowering in the model legume, Medicago truncatula (Medicago) is accelerated by winter cold (vernalisation) followed by long day (LD) photoperiods leading to elevated expression of the floral activator, FT-like gene FTa1. However, Medicago, like some other plants, lacks the activator CONSTANS (CO) and the repressor FLOWERING LOCUS C (FLC) genes which directly regulate FT and are key to LD and vernalisation responses in Arabidopsis. Conversely, Medicago has a VERNALISATION2-LIKE VEFS-box gene (MtVRN2). In Arabidopsis AtVRN2 is a key member of a Polycomb complex involved in stable repression of Arabidopsis FLC after vernalisation. VRN2-like genes have been identified in other eudicot plants, but their function has never been reported. We show that Mtvrn2 mutants bypass the need for vernalisation for early flowering in LD conditions in Medicago. Investigation of the underlying mechanism by transcriptome analysis reveals that Mtvrn2 mutants precociously express FTa1 and other suites of genes including floral homeotic genes. Double-mutant analysis indicates that early flowering is dependent on functional FTa1. The broad significance of our study is that we have demonstrated a function for a VRN2-like VEFS gene beyond the Brassicaceae. In particular, MtVRN2 represses the transition to flowering in Medicago by regulating the onset of expression of the potent floral activator, FTa1.

  4. The temperature response of CO2 assimilation, photochemical activities and Rubisco activation in Camelina sativa, a potential bioenergy crop with limited capacity for acclimation to heat stress.

    Science.gov (United States)

    Carmo-Silva, A Elizabete; Salvucci, Michael E

    2012-11-01

    The temperature optimum of photosynthesis coincides with the average daytime temperature in a species' native environment. Moderate heat stress occurs when temperatures exceed the optimum, inhibiting photosynthesis and decreasing productivity. In the present study, the temperature response of photosynthesis and the potential for heat acclimation was evaluated for Camelina sativa, a bioenergy crop. The temperature optimum of net CO(2) assimilation rate (A) under atmospheric conditions was 30-32 °C and was only slightly higher under non-photorespiratory conditions. The activation state of Rubisco was closely correlated with A at supra-optimal temperatures, exhibiting a parallel decrease with increasing leaf temperature. At both control and elevated temperatures, the modeled response of A to intercellular CO(2) concentration was consistent with Rubisco limiting A at ambient CO(2). Rubisco activation and photochemical activities were affected by moderate heat stress at lower temperatures in camelina than in the warm-adapted species cotton and tobacco. Growth under conditions that imposed a daily interval of moderate heat stress caused a 63 % reduction in camelina seed yield. Levels of cpn60 protein were elevated under the higher growth temperature, but acclimation of photosynthesis was minimal. Inactivation of Rubisco in camelina at temperatures above 35 °C was consistent with the temperature response of Rubisco activase activity and indicated that Rubisco activase was a prime target of inhibition by moderate heat stress in camelina. That photosynthesis exhibited no acclimation to moderate heat stress will likely impact the development of camelina and other cool season Brassicaceae as sources of bioenergy in a warmer world.

  5. Metal extraction by Alyssum serpyllifolium ssp. lusitanicum on mine-spoil soils from Spain.

    Science.gov (United States)

    Kidd, P S; Monterroso, C

    2005-01-05

    The efficiency of Alyssum serpyllifolium ssp. lusitanicum (Brassicaceae) for use in phytoextraction of polymetallic contaminated soils was evaluated. A. serpyllifolium was grown on two mine-spoil soils (MS1 and MS2): MS1 is contaminated with Cr (283 mg kg(-1)) and MS2 is moderately contaminated with Cr (263 mg kg(-1)), Cu (264 mg kg(-1)), Pb (1433 mg kg(-1)) and Zn (377 mg kg(-1)). Soils were limed to about pH 6.0 (MS1/Ca and MS2/Ca) or limed and amended with NPK fertilisers (MS1/NPK and MS2/NPK). Biomass was reduced on MS2/Ca due to Cu phytotoxicity. Fertilisation increased biomass by 10-fold on MS1/NPK, but root growth was reduced by 7-fold compared with MS1/Ca. Plants accumulated Mn, Ni and Zn in shoots, and both metal content and transportation were generally greater in MS2 than in MS1. Zinc bioaccumulation factors (BF, shoot([metal])/soil([metal])) were significantly greater in MS2 than in MS1. However, metal yields were greatest in plants grown on MS1/NPK. Concentrations of EDTA-, NH(4)Cl- and Mehlich 3 (M3)-extractable Mn and Zn were greater after plant growth. Concentrations of M3-extractable Cr, Ni, Pb and Zn were increased at the rhizosphere. Sequential extractions showed changes in the metal distribution among different soil fractions after growth. This could reflect the buffering capacity of these soils or the plants' ability to mobilise metals from less plant-available soil pools. Results suggest that A. serpyllifolium could be suitable for phytoextraction uses in polymetallic-contaminated soils, provided Cu concentrations were not phytotoxic. However, further optimisation of growth and metal extraction are required.

  6. Reevaluation and whole distribution areas of endemic plants of Kütahya (Turkey according to new IUCN danger categoriesSpread Areas on Kütahya (Turkey of Some Endemic Plants and Reevaluation According to New IUCN Danger Categories

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    Ahmet Tel

    2012-04-01

    Full Text Available This study is carried to determine the localities of endemic taxa of Kütahya, in the inner Western part of Anatolia, and later to delineate their spread in other parts of Turkey and to reevaluate IUCN categories in light of these data. According to this, there are 291 endemic taxa and 4 rare taxa belonging to 39 families are determined in the boundaries of Kütahya. Only, 16 taxa were spread on city of Kütahya. 45 taxa were spread on Aegean region; other taxa were spread on outside of Aegean region. Most families contain more taxa are Asteraceae (43 taxa, Fabaceae (35 taxa, Scrophulariaceae (29 taxa, Lamiaceae (27 taxa and Brassicaceae (18 taxa. The endemic taxa numbers (114 taxa of endemic taxa on the Murat Mountain (the highest altitude of Kütahya are more than other localities. The phytogeographic elements of endemic plants of Kütahya are represented as follows: Irano-Turanian 93 taxa, Mediterranean 72 taxa and Europe-Siberian region 10 taxa. The threatened catagories of these endemics taxa were reevaluated and certain danger categories are updated by using literature. According to the new IUCN danger categories as follows; 2 taxa in CR (critically endangered category, 17 taxa in EN (endangered category, 30 taxa in VU (vulnerable, 28 taxa in the cd (conservation sub-category of LR (lower risk, 23 taxa in the nt (near threatened sub-cetagory of LR, 190 taxa in lc (least concern sub-category of LR and one takson in DD (data deficient categories were determined.

  7. Hydration status influences seed fire tolerance in temperate European herbaceous species.

    Science.gov (United States)

    Ruprecht, E; Lukács, K; Domokos, P; Kuhn, T; Fenesi, A

    2016-03-01

    Prescribed burning is an important management tool in many parts of the world. While natural fires generally occur during the driest and warmest period of the year, prescribed burning is often timed out-of-season, when there is higher soil moisture and lower biomass combustibility. However, fire season may influence seedling recruitment after fire, e.g. through the effect of seed hydration status on fire tolerance. In non-fire-prone temperate regions, anthropogenic fire may occur exclusively in periods outside the growing season with higher soil moisture, which may have negative consequences on seedling recruitment. Fire tolerance of moist and dry seeds of 16 temperate European herbaceous species belonging to four families was assessed using heat treatment of 100 °C for 5 min and subsequent germination trials. Moist seeds of Asteraceae, Poaceae and Brassicaceae had a predominantly negative reaction to the heat treatment, while those of Fabaceae tolerated it or germination was even enhanced. The reaction of dry seeds was completely different, with positive responses in three species of the Fabaceae and fire tolerance in species of other families. Our results point out that hydration status may significantly influence the post-fire germination of seeds. Dry seeds were found to tolerate high heat, while moist seeds were harmed in more than half of the species. This implies that if prescribed burning is applied in temperate grasslands of Europe, it should be timed to dry periods of the dormant season in order to protect seeds from negative effects of fire.

  8. Ethnobotanical notes about some uses of medicinal plants in Alto Tirreno Cosentino area (Calabria, Southern Italy

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    Impieri Massimo

    2007-11-01

    Full Text Available Abstract Background The present paper contributes to enrich the ethnobotanical knowledge of Calabria region (Southern Italy. Research was carried out in Alto Tirreno Cosentino, a small area lying between the Tyrrhenian coast and the Pollino National Park. In the area studied medicinal plants still play a small role among farmers, shepherds and other people who live far from villages and built-up areas. Methods Information was collected by interviewing native people, mainly elderly – engaged in farming and stock-raising activities – and housewives. The plants collected, indicated by the locals, have been identified according to "Flora d'Italia". The exsiccata vouchers are preserved in the authors' own herbaria. Results 52 medicinal species belonging to 35 families are listed in this article. The family, botanical and vernacular name, part of the plant used and respective manipulation are reported there and, when present, similar or identical uses in different parts of Calabria or other Italian regions are also indicated. Conclusion Labiatae, Rosaceae and Leguminosae are the families most frequently present, whilst Compositae and Brassicaceae are almost absent. The uses of the recorded species relate to minor ailments, mainly those of the skin (15 species, respiratory apparatus diseases (11, toothache, decay etc. (10 and rheumatic pains (8. The easy availability of these remedies provides a quick way of curing various minor complaints such as tooth-ache, belly and rheumatic pain and headaches and can also serve as first aid as cicatrizing, lenitive, haemostatic agents etc. The role in veterinary medicine is, on the contrary, more important: sores, ulcers, tinea, dermatitis, gangrenous wounds of cattle, and even respiratory ailments are usually cured by resort to plants.

  9. SPRING FLORA OF CEMETERIES OF ODESSA

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    N. V. Gerasimyuk

    2014-04-01

    Full Text Available The spring flora was analyzed on six cemeteries in Odessa, such cemeteries as Vtoroe xristianskoe, Troickoe, Tairovskoe, Trete evrejskoe, Oficerskoe (Dmitrievskое and Severnoe. There were found and identified 235 species of plants, which belong to 186 genera and 67 families. There was taken a taxonomic analysis of flora of the cemeteries also of spreding of plants by ekobiomorphs, the analysis of hronotyp and origin. The proportion of the flora on the cemeteries is 1:2,8:3,5. The dominant family of the flora of Odessa’s cemeteries is Asteraceae. There are other leading families such as Rosaceae, Fabaceae, Poaceae, Brassicaceae, Lamiaceae. Herbs and trees are dominant among the life forms. Mesophytes and kseromezophytes are in the majority among hihromorphs. Heliophytes are on the first place by adapting to the light. Our results showed that the adventitious plants occupy up to 44% of all amount of plants at the cemeteries in Odessa. Kenophytes is a dominant group among them. Floragenetics analysis revealed the dominance of the plants from Asia. There have been allocated plants that were met at all six cemeteries independently of the location religious and age characteristics of the cemetery. "Core" of the flora of Odessa’s cemetery have made weed Acer negundo L., Ballota nigra L. and decorative Hedera helix L., Centaurea dealbata Willd., Buxus sempervirens L., Convallaria majalis L., Sedum kamtschaticum Fisch., Thuja occidentalis L., Hemerocalis fulva (L. L. There were found 4 species of plants that belong to the rare and endangered plants of Odessa’s region: Convallaria majalis L., Hyacinthella leucophaea (K. Koch Schur, Clematis integrifolia L., Paeonia tenuifolia L. Moreover Convallaria majalis L. grows on all six investigated cemeteries. Also two species: Hyacinthella leucophaea (K. Koch Schur and Clematis Keywords: cemeteries, Odessa, flora, plants, ekobiomorphs.

  10. Poppy APETALA1/FRUITFULL orthologs control flowering time, branching, perianth identity, and fruit development.

    Science.gov (United States)

    Pabón-Mora, Natalia; Ambrose, Barbara A; Litt, Amy

    2012-04-01

    Several MADS box gene lineages involved in flower development have undergone duplications that correlate with the diversification of large groups of flowering plants. In the APETALA1 gene lineage, a major duplication coincides with the origin of the core eudicots, resulting in the euFUL and the euAP1 clades. Arabidopsis FRUITFULL (FUL) and APETALA1 (AP1) function redundantly in specifying floral meristem identity but function independently in sepal and petal identity (AP1) and in proper fruit development and determinacy (FUL). Many of these functions are largely conserved in other core eudicot euAP1 and euFUL genes, but notably, the role of APETALA1 as an "A-function" (sepal and petal identity) gene is thought to be Brassicaceae specific. Understanding how functional divergence of the core eudicot duplicates occurred requires a careful examination of the function of preduplication (FUL-like) genes. Using virus-induced gene silencing, we show that FUL-like genes in opium poppy (Papaver somniferum) and California poppy (Eschscholzia californica) function in axillary meristem growth and in floral meristem and sepal identity and that they also play a key role in fruit development. Interestingly, in opium poppy, these genes also control flowering time and petal identity, suggesting that AP1/FUL homologs might have been independently recruited in petal identity. Because the FUL-like gene functional repertoire encompasses all roles previously described for the core eudicot euAP1 and euFUL genes, we postulate subfunctionalization as the functional outcome after the major AP1/FUL gene lineage duplication event.

  11. Vacuolar iron transporter BnMEB2 is involved in enhancing iron tolerance of Brassica napus

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    Wei Zhu

    2016-09-01

    Full Text Available Iron toxicity is a major nutrient disorder that severely affects crop development and yield. Vacuolar detoxification of metal stress is an important strategy for plants to survive and adapt to this adverse environment. Vacuolar iron transporter (VIT members are involved in this process and play essential roles in iron storage and transport. In this study, a rapeseed VIT gene BnMEB2 (BnaC07g30170D was identified. BnMEB2 is a homolog to Arabidopsis MEB2 (At5g24290 and acts as a detoxifier in vacuolar sequestration of divalent metal. Transient expression analysis revealed that BnMEB2 was localized to the vacuolar membrane. Q-PCR detection showed a high expression of BnMEB2 in mature (60-day-old leaves and could be obviously induced by exogenous iron stress in both roots and leaves. Over-expressed BnMEB2 in both Arabidopsis wild type and meb2 mutant seedlings resulted in greatly improved iron tolerability with no significant changes in the expression level of other vacuolar iron transporter genes. The mutant meb2 grew slowly and its root hair elongation was inhibited under high iron concentration condition while BnMEB2 over-expressed transgenic plants of the mutant restored the phenotypes with apparently higher iron storage in roots and dramatically increased iron content in the whole plant. Taken together, these results suggested that BnMEB2 was a VIT gene in rapeseed which was necessary for safe storage and vacuole detoxification function of excess iron to enhance the tolerance of iron toxicity. This research sheds light on a potentially new strategy for attenuating hazardous metal stress from environment and improving iron biofortification in Brassicaceae crops.

  12. Overexpression of the Novel Arabidopsis Gene At5g02890 Alters Inflorescence Stem Wax Composition and Affects Phytohormone Homeostasis

    Science.gov (United States)

    Xu, Liping; Zeisler, Viktoria; Schreiber, Lukas; Gao, Jie; Hu, Kaining; Wen, Jing; Yi, Bin; Shen, Jinxiong; Ma, Chaozhi; Tu, Jinxing; Fu, Tingdong

    2017-01-01

    The cuticle is composed of cutin and cuticular wax. It covers the surfaces of land plants and protects them against environmental damage. At5g02890 encodes a novel protein in Arabidopsis thaliana. In the current study, protein sequence analysis showed that At5g02890 is highly conserved in the Brassicaceae. Arabidopsis lines overexpressing At5g02890 (OE-At5g02890 lines) and an At5g02890 orthologous gene from Brassica napus (OE-Bn1 lines) exhibited glossy stems. Chemical analysis revealed that overexpression of At5g02890 caused significant reductions in the levels of wax components longer than 28 carbons (C28) in inflorescence stems, whereas the levels of wax molecules of chain length C28 or shorter were significantly increased. Transcriptome analysis indicated that nine of 11 cuticular wax synthesis-related genes with different expression levels in OE-At5g02890 plants are involved in very-long-chain fatty acid (VLCFA) elongation. At5g02890 is localized to the endoplasmic reticulum (ER), which is consistent with its function in cuticular wax biosynthesis. These results demonstrate that the overexpression of At5g02890 alters cuticular wax composition by partially blocking VLCFA elongation of C28 and higher. In addition, detailed analysis of differentially expressed genes associated with plant hormones and endogenous phytohormone levels in wild-type and OE-At5g02890 plants indicated that abscisic acid (ABA), jasmonic acid (JA), and jasmonoyl-isoleucine (JA-Ile) biosynthesis, as well as polar auxin transport, were also affected by overexpression of At5g02890. Taken together, these findings indicate that overexpression of At5g02890 affects both cuticular wax biosynthesis and phytohormone homeostasis in Arabidopsis. PMID:28184233

  13. Regulation of the S-locus receptor kinase and self-incompatibility in Arabidopsis thaliana.

    Science.gov (United States)

    Strickler, Susan R; Tantikanjana, Titima; Nasrallah, June B

    2013-02-01

    Intraspecific mate selectivity often is enforced by self-incompatibility (SI), a barrier to self-pollination that inhibits productive pollen-pistil interactions. In the Brassicaceae, SI specificity is determined by two highly-polymorphic proteins: the stigmatic S-locus receptor kinase (SRK) and its pollen coat-localized ligand, the S-locus cysteine-rich protein (SCR). Arabidopsis thaliana is self fertile, but several of its accessions can be made to express SI, albeit to various degrees, by transformation with functional SRK-SCR gene pairs isolated from its close self-incompatible relative, Arabidopsis lyrata. Here, we use a newly identified induced mutation that suppresses the SI phenotype in stigmas of SRK-SCR transformants of the Col-0 accession to investigate the regulation of SI and the SRK transgene. This mutation disrupts NRPD1a, a gene that encodes a plant-specific nuclear RNA polymerase required for genomic methylation and production of some types of silencing RNAs. We show that NRPD1a, along with the RNA-dependent RNA polymerase RDR2, is required for SI in some A. thaliana accessions. We also show that Col-0 nrpd1a mutants exhibit decreased accumulation of SRK transcripts in stigmas, which is not, however, responsible for loss of SI in these plants. Together, our analysis of the nrpd1a mutation and of SRK promoter activity in various accessions reveals that the SRK transgene is subject to several levels of regulation, which vary substantially by tissue type and by accession. This study thus helps explain the well-documented differences in expression of SI exhibited by SRK-SCR transformants of different A. thaliana accessions.

  14. Integration of linkage maps for the Amphidiploid Brassica napus and comparative mapping with Arabidopsis and Brassica rapa

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    Delourme Régine

    2011-02-01

    Full Text Available Abstract Background The large number of genetic linkage maps representing Brassica chromosomes constitute a potential platform for studying crop traits and genome evolution within Brassicaceae. However, the alignment of existing maps remains a major challenge. The integration of these genetic maps will enhance genetic resolution, and provide a means to navigate between sequence-tagged loci, and with contiguous genome sequences as these become available. Results We report the first genome-wide integration of Brassica maps based on an automated pipeline which involved collation of genome-wide genotype data for sequence-tagged markers scored on three extensively used amphidiploid Brassica napus (2n = 38 populations. Representative markers were selected from consolidated maps for each population, and skeleton bin maps were generated. The skeleton maps for the three populations were then combined to generate an integrated map for each LG, comparing two different approaches, one encapsulated in JoinMap and the other in MergeMap. The BnaWAIT_01_2010a integrated genetic map was generated using JoinMap, and includes 5,162 genetic markers mapped onto 2,196 loci, with a total genetic length of 1,792 cM. The map density of one locus every 0.82 cM, corresponding to 515 Kbp, increases by at least three-fold the locus and marker density within the original maps. Within the B. napus integrated map we identified 103 conserved collinearity blocks relative to Arabidopsis, including five previously unreported blocks. The BnaWAIT_01_2010a map was used to investigate the integrity and conservation of order proposed for genome sequence scaffolds generated from the constituent A genome of Brassica rapa. Conclusions Our results provide a comprehensive genetic integration of the B. napus genome from a range of sources, which we anticipate will provide valuable information for rapeseed and Canola research.

  15. ORIGEN GEOGRÁFICO Y BOTÁNICO DE MIELES DE Apis mellifera (APIDAE EN CUATRO DEPARTAMENTOS DE COLOMBIA

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    Guiomar Nates Parra

    2013-07-01

    Full Text Available El objetivo de este trabajo fue determinar marcadores palinológicos que permitieran caracterizar el origen geográfico y botánico de mieles provenientes de los departamentos de Boyacá, Cundinamarca, Santander y Magdalena. Se realizaron análisis melisopalinológicos de 184 muestras de miel procedentes de 131 apiarios. Se determinaron diferencias significativas entre tipos de mieles mediante un análisis discriminante y comparando la composición de especies entre las muestras. En total se encontraron 297 especies distribuidas en 69 familias, dentro de las cuales las más representativas fueron Mimosa sp., Cecropia sp., Eucalyptus sp., Piper sp. y Quercus humboldtii. Las familias más importantes fueron Fabaceae, Asteraceae,Myrtaceae, Rubiaceae, Fagaceae, y Melastomataceae. Se lograron determinar seis grupos de mieles diferenciadas por su origen geográfico: Altiplano Cundiboyacense, Medio Chicamocha, Sumapaz, Bajo Chicamocha, Sierra Nevada de Santa Marta y Provincia Comunera; también se encontraron diferencias entre las mieles de las regiones andinas y subandinas. Dentro de los tipos de mieles diferenciadas por origen botánico predominaron las mieles monoflorales de Trifolium pratense, Coffea arabica, Eucalyptus sp., Inga sp.y Heliocarpus americanus, mieles oligoflorales de asteráceas y mezclas de mielato de Q. humboldtii y néctar floral (Eucalyptus sp. tipo Brassicaceae, asteráceas. La información de este trabajo junto con la obtenida en análisis fisicoquímicos y sensoriales servirá de base para que los apicultores puedan solicitar la denominación de origen de estas mieles.

  16. Growth and Metal Accumulation of an Alyssum murale Nickel Hyperaccumulator Ecotype Co-cropped with Alyssum montanum and Perennial Ryegrass in Serpentine Soil

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    Catherine Leigh Broadhurst

    2016-04-01

    Full Text Available The genus Alyssum (Brassicaceae contains Ni hyperaccumulators (50, many of which can achieve 30 g kg-1 Ni in dry leaf. Some Alyssum hyperaccumulators are viable candidates for commercial Ni phytoremediation and phytomining technologies. It is not known whether these species secrete organic and/or amino acids into the rhizosphere to solubilize Ni, or can make use of such acids within the soil to facilitate uptake. It has been hypothesized that in fields with mixed plant species, mobilization of metals by phytosiderophores secreted by Graminaceae plants could affect Alyssum Ni, Fe, Cu and Mn uptake.We co-cropped the Ni hyperaccumulator Alyssum murale, non-hyperaccumulator A. montanum and perennial ryegrass in a natural serpentine soil. All treatments had standard inorganic fertilization required for ryegrass growth and one treatment was compost amended. After 4 months A. murale leaves and stems contained 3600 mg kg-1 Ni which did not differ significantly with co-cropping. Overall Ni and Mn concentrations were significantly higher in A. murale than in A. montanum or L. perenne. Copper was not accumulated by either Alyssum species, but L. perenne accumulated up to 10 mg kg-1. A. montanum could not compete with either A. murale or ryegrass, and neither Alyssum species survived in the compost-amended soil. Co-cropping with ryegrass reduced Fe and Mn concentrations in A. murale but not to the extent of either increasing Ni uptake or affecting plant nutrition. The hypothesized Alyssum Ni accumulation in response to phytosiderophores secreted by co-cropped grass did not occur. Our data do not support increased mobilization of Mn by a phytosiderophore mechanism either, but the converse: mobilization of Mn by the Alyssum hyperaccumulator species significantly increased Mn levels in L. perenne. Tilling soil to maximize root penetration, adequate inorganic fertilization and appropriate plant densities are more important for developing efficient

  17. Monitoring the Photosynthetic Apparatus During Space Flight: Interspecific Variation in Chlorophyll Fluorescence Signatures Induced by Different Root Zone Stresses

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    Bubenheim, David L.; Patterson, Mark T.; Kliss, Mark H. (Technical Monitor)

    1996-01-01

    Chlorophyll fluorescence has been used extensively as a tool to indicate stress to the photosynthetic apparatus in green plants. A rise in fluorescence has been attributed to the blockage of photosystem II photochemistry, and patterns of fluorescence decay (quenching) from dark adapted leaves can be related to specific photochemical and non-photochemical deexcitation pathways of light trapped by the photosynthetic apparatus and thus result in characteristically different fluorescence signatures. Four distantly related plant species, Hypocharis radicata (Asteraceae), Brassica rapa (Brassicaceae), Spinacea oleracea (Chenopodiaceae) and Triticum aestivum (Poaceae), were grown hydroponically for three weeks before the initiation of three different root zone stresses (10 mM Cu, 100 mM NaCl and nitrogen deficient nutrition). After 10 days, characteristic fluorescence signatures for each stress could be noted although the degree varied between species. Fast kinetics analysis showed a reduction in plastoquinone pool size for copper and nitrogen stress for all species but a more species specific result with NaCl stress. Photochemical quenching kinetics varied between species and stress treatments from no quenching in S. oleracea in copper treatments to increased photochemical quenching in NaCl treatments. Non-photochemical quenching kinetics demonstrated a distinct pattern between stresses for all species. Copper treatments characteristically exhibited a shallow, flat non-photochemical quenching profile suggesting a general blockage of electron transport whereas NaCl treatments exhibited a slow rising profile that suggested damage to thylakoid acidification kinetics and nitrogen deficiency exhibited a fast rising and declining profile that suggested an altered state 1-state 2 transition regulated by the phosphorylation of LHCII. These results demonstrate characteristic fluorescence signatures for specific plant stresses that may be applied to different, unrelated plant

  18. ABA crosstalk with ethylene and nitric oxide in seed dormancy and germination

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    Erwann eArc

    2013-03-01

    Full Text Available Dormancy is an adaptive trait that enables seed germination to coincide with favorable environmental conditions. It has been clearly demonstrated that dormancy is induced by abscisic acid (ABA during seed development on the mother plant. After seed dispersal, germination is preceded by a decline in ABA in imbibed seeds, which results from ABA catabolism through 8’-hydroxylation. The hormonal balance between ABA and gibberellins (GAs has been shown to act as an integrator of environmental cues to maintain dormancy or activate germination. The interplay of ABA with other endogenous signals is however less documented. In numerous species, ethylene counteracts ABA signaling pathways and induces germination. In Brassicaceae seeds, ethylene prevents the inhibitory effects of ABA on endosperm cap weakening, thereby facilitating endosperm rupture and radicle emergence. Moreover, enhanced seed dormancy in Arabidopsis ethylene-insensitive mutants results from greater ABA sensitivity. Conversely, ABA limits ethylene action by down-regulating its biosynthesis. Nitric oxide (NO has been proposed as a common actor in the ABA and ethylene crosstalk in seed. Indeed, convergent evidence indicates that NO is produced rapidly after seed imbibition and promotes germination by inducing the expression of the ABA 8’-hydroxylase gene, CYP707A2, and stimulating ethylene production. The role of NO and other nitrogen-containing compounds, such as nitrate, in seed dormancy breakage and germination stimulation has been reported in several species. This review will describe our current knowledge of ABA crosstalk with ethylene and NO, both volatile compounds that have been shown to counteract ABA action in seeds and to improve dormancy release and germination.

  19. Arabidopsis NITRILASE 1 Contributes to the Regulation of Root Growth and Development through Modulation of Auxin Biosynthesis in Seedlings.

    Science.gov (United States)

    Lehmann, Thomas; Janowitz, Tim; Sánchez-Parra, Beatriz; Alonso, Marta-Marina Pérez; Trompetter, Inga; Piotrowski, Markus; Pollmann, Stephan

    2017-01-01

    Nitrilases consist of a group of enzymes that catalyze the hydrolysis of organic cyanides. They are found ubiquitously distributed in the plant kingdom. Plant nitrilases are mainly involved in the detoxification of ß-cyanoalanine, a side-product of ethylene biosynthesis. In the model plant Arabidopsis thaliana a second group of Brassicaceae-specific nitrilases (NIT1-3) has been found. This so-called NIT1-subfamily has been associated with the conversion of indole-3-acetonitrile (IAN) into the major plant growth hormone, indole-3-acetic acid (IAA). However, apart of reported functions in defense responses to pathogens and in responses to sulfur depletion, conclusive insight into the general physiological function of the NIT-subfamily nitrilases remains elusive. In this report, we test both the contribution of the indole-3-acetaldoxime (IAOx) pathway to general auxin biosynthesis and the influence of altered nitrilase expression on plant development. Apart of a comprehensive transcriptomics approach to explore the role of the IAOx route in auxin formation, we took a genetic approach to disclose the function of NITRILASE 1 (NIT1) of A. thaliana. We show that NIT1 over-expression (NIT1ox) results in seedlings with shorter primary roots, and an increased number of lateral roots. In addition, NIT1ox plants exhibit drastic changes of both free IAA and IAN levels, which are suggested to be the reason for the observed phenotype. On the other hand, NIT2RNAi knockdown lines, capable of suppressing the expression of all members of the NIT1-subfamily, were generated and characterized to substantiate the above-mentioned findings. Our results demonstrate for the first time that Arabidopsis NIT1 has profound effects on root morphogenesis in early seedling development.

  20. Integration of a constraint-based metabolic model of Brassica napus developing seeds with 13C-Metabolic Flux Analysis

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    Jordan eHay

    2014-12-01

    Full Text Available The use of large-scale or genome-scale metabolic reconstructions for modeling and simulation of plant metabolism and integration of those models with large-scale omics and experimental flux data is becoming increasingly important in plant metabolic research. Here we report an updated version of bna572, a bottom-up reconstruction of oilseed rape (Brassica napus L.; Brassicaceae developing seeds with emphasis on representation of biomass-component biosynthesis. New features include additional seed-relevant pathways for isoprenoid, sterol, phenylpropanoid, flavonoid, and choline biosynthesis. Being now based on standardized data formats and procedures for model reconstruction, bna572+ is available as a COBRA-compliant Systems Biology Markup Language (SBML model and conforms to the Minimum Information Requested in the Annotation of Biochemical Models (MIRIAM standards for annotation of external data resources. Bna572+ contains 966 genes, 671 reactions, and 666 metabolites distributed among 11 subcellular compartments. It is referenced to the Arabidopsis thaliana genome, with gene-protein-reaction associations resolving subcellular localization. Detailed mass and charge balancing and confidence scoring were applied to all reactions. Using Brassica napus seed specific transcriptome data, expression was verified for 78% of bna572+ genes and 97% of reactions. Alongside bna572+ we also present a revised carbon centric model for 13C-Metabolic Flux Analysis (13C-MFA with all its reactions being referenced to bna572+ based on linear projections. By integration of flux ratio constraints obtained from 13C-MFA and by elimination of infinite flux bounds around thermodynamically infeasible loops based on COBRA loopless methods, we demonstrate improvements in predictive power of Flux Variability Analysis (FVA. Using this combined approach we characterize the difference in metabolic flux of developing seeds of two Brassica napus genotypes contrasting in starch and

  1. Wild vegetable mixes sold in the markets of Dalmatia (southern Croatia

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    Łuczaj Łukasz

    2013-01-01

    Full Text Available Abstract Background Dalmatia is an interesting place to study the use of wild greens as it lies at the intersection of influence of Slavs, who do not usually use many species of wild greens, and Mediterranean culinary culture, where the use of multiple wild greens is common. The aim of the study was to document the mixtures of wild green vegetables which are sold in all the vegetable markets of Dalmatia. Methods All vendors (68 in all 11 major markets of the Dalmatian coast were interviewed. The piles of wild vegetables they sold were searched and herbarium specimens taken from them. Results The mean number of species in the mix was 5.7. The most commonly sold wild plants are: Sonchus oleraceus L., Allium ampeloprasum L., Foeniculum vulgare Mill., Urospermum picroides F.W.Schmidt, Papaver rhoeas L., Daucus carota L., Taraxacum sp., Picris echioides L., Silene latifolia Poir. and Crepis spp. Also the cultivated beet (Beta vulgaris L. and a few cultivated Brassicaceae varieties are frequent components. Wild vegetables from the mix are usually boiled for 20–30 minutes and dressed with olive oil and salt. Altogether at least 37 wild taxa and 13 cultivated taxa were recorded. Apart from the mixes, Asparagus acutifolius L. and Tamus communis L. shoots are sold in separate bunches (they are usually eaten with eggs, as well as some Asteraceae species, the latter are eaten raw or briefly boiled. Conclusions The rich tradition of eating many wild greens may result both from strong Venetian and Greek influences and the necessity of using all food resources available in the barren, infertile land in the past. Although the number of wild-collected green vegetables is impressive we hypothesize that it may have decreased over the years, and that further in-depth local ethnobotanical studies are needed in Dalmatia to record the disappearing knowledge of edible plants.

  2. Smoke-induced seed germination in California chaparral

    Science.gov (United States)

    Keeley, J.E.; Fotheringham, C.J.

    1998-01-01

    The California chaparral community has a rich flora of species with different mechanisms for cuing germination to postfire conditions. Heat shock triggers germination of certain species but has no stimulatory effect on a great many other postfire species that are chemically stimulated by combustion products. Previous reports have shown that charred wood will induce germination, and here we report that smoke also induces germination in these same species. Smoke is highly effective, often inducing 100% germination in deeply dormant seed populations with 0% control germination. Smoke induces germination both directly and indirectly by aqueous or gaseous transfer from soil to seeds. Neither nitrate nor ammonium ions were effective in stimulating germination of smoke-stimulated species, nor were most of the quantitatively important gases generated by biomass smoke. Nitrogen dioxide, however, was very effective at inducing germination in Caulanthus heterophyllus (Brassicaceae), Emmenanthe penduliflora (Hydrophyllaceae), Phacelia grandiflora (Hydrophyllaceae), and Silene multinervia (Caryophyllaceae). Three species, Dendromecon rigida (Papaveraceae), Dicentra chrysantha, and Trichostema lanatum (Lamiaceae), failed to germinate unless smoke treatment was coupled with prior treatment of 1 yr soil storage. Smoke-stimulated germination was found in 25 chaparral species, representing 11 families, none of which were families known for heat-shock-stimulated germination. Seeds of smoke-stimulated species have many analogous characteristics that separate them from most heat-shock-stimulated seeds, including: (1) outer seed coats that are highly textured, (2) a poorly developed outer cuticle, (3) absence of a dense palisade tissue in the seed coat, and (4) a subdermal membrane that is semipermeable, allowing water passage but blocking entry of large (molecular mass > 500) solutes. Tentative evidence suggests that permeability characteristics of this subdermal layer are altered by

  3. Genomic Treasure Troves: Complete Genome Sequencing of Herbarium and Insect Museum Specimens

    Science.gov (United States)

    Staats, Martijn; Erkens, Roy H. J.; van de Vossenberg, Bart; Wieringa, Jan J.; Kraaijeveld, Ken; Stielow, Benjamin; Geml, József; Richardson, James E.; Bakker, Freek T.

    2013-01-01

    Unlocking the vast genomic diversity stored in natural history collections would create unprecedented opportunities for genome-scale evolutionary, phylogenetic, domestication and population genomic studies. Many researchers have been discouraged from using historical specimens in molecular studies because of both generally limited success of DNA extraction and the challenges associated with PCR-amplifying highly degraded DNA. In today's next-generation sequencing (NGS) world, opportunities and prospects for historical DNA have changed dramatically, as most NGS methods are actually designed for taking short fragmented DNA molecules as templates. Here we show that using a standard multiplex and paired-end Illumina sequencing approach, genome-scale sequence data can be generated reliably from dry-preserved plant, fungal and insect specimens collected up to 115 years ago, and with minimal destructive sampling. Using a reference-based assembly approach, we were able to produce the entire nuclear genome of a 43-year-old Arabidopsis thaliana (Brassicaceae) herbarium specimen with high and uniform sequence coverage. Nuclear genome sequences of three fungal specimens of 22–82 years of age (Agaricus bisporus, Laccaria bicolor, Pleurotus ostreatus) were generated with 81.4–97.9% exome coverage. Complete organellar genome sequences were assembled for all specimens. Using de novo assembly we retrieved between 16.2–71.0% of coding sequence regions, and hence remain somewhat cautious about prospects for de novo genome assembly from historical specimens. Non-target sequence contaminations were observed in 2 of our insect museum specimens. We anticipate that future museum genomics projects will perhaps not generate entire genome sequences in all cases (our specimens contained relatively small and low-complexity genomes), but at least generating vital comparative genomic data for testing (phylo)genetic, demographic and genetic hypotheses, that become increasingly more

  4. The calmodulin-like proteins AtCML4 and AtCML5 are single-pass membrane proteins targeted to the endomembrane system by an N-terminal signal anchor sequence.

    Science.gov (United States)

    Ruge, Henning; Flosdorff, Sandra; Ebersberger, Ingo; Chigri, Fatima; Vothknecht, Ute C

    2016-06-01

    Calmodulins (CaMs) are important mediators of Ca(2+) signals that are found ubiquitously in all eukaryotic organisms. Plants contain a unique family of calmodulin-like proteins (CMLs) that exhibit greater sequence variance compared to canonical CaMs. The Arabidopsis thaliana proteins AtCML4 and AtCML5 are members of CML subfamily VII and possess a CaM domain comprising the characteristic double pair of EF-hands, but they are distinguished from other members of this subfamily and from canonical CaMs by an N-terminal extension of their amino acid sequence. Transient expression of yellow fluorescent protein-tagged AtCML4 and AtCML5 under a 35S-promoter in Nicotiana benthamiana leaf cells revealed a spherical fluorescence pattern. This pattern was confirmed by transient expression in Arabidopsis protoplasts under the native promoter. Co-localization analyses with various endomembrane marker proteins suggest that AtCML4 and AtCML5 are localized to vesicular structures in the interphase between Golgi and the endosomal system. Further studies revealed AtCML5 to be a single-pass membrane protein that is targeted into the endomembrane system by an N-terminal signal anchor sequence. Self-assembly green fluorescent protein and protease protection assays support a topology with the CaM domain exposed to the cytosolic surface and not the lumen of the vesicles, indicating that AtCML5 could sense Ca(2+) signals in the cytosol. Phylogenetic analysis suggests that AtCML4 and AtCML5 are closely related paralogues originating from a duplication event within the Brassicaceae family. CML4/5-like proteins seem to be universally present in eudicots but are absent in some monocots. Together these results show that CML4/5-like proteins represent a flowering plant-specific subfamily of CMLs with a potential function in vesicle transport within the plant endomembrane system.

  5. Anti-inflammatory and anti-proliferative activities of the wild edible cruciferous: Diplotaxis simplex.

    Science.gov (United States)

    Jdir, Hamida; Khemakham, Bassem; Najjaa, Hanen; Chakroun, Mouna; Jridi, Mourad; Ben Arfa, Abdelkarim; Ben Ali, Yassine; Zouari, Nacim

    2016-10-01

    Context The present study deals with new biological properties of the wild edible Diplotaxis simplex (Viv.) Spreng (Brassicaceae). Objectives The current study evaluates the antioxidant, the anti-inflammatory and the anti-cancer properties of ethyl acetate and ethanol extracts from D. simplex flowers. Materials and methods The anti-proliferative activity of the extracts (10-70 μg/mL) was assessed by 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) against human colon cancer cell line Caco-2. The anti-inflammatory potential was evaluated by the inhibitory effect of the extracts (1.5-7.5 mg/mL) on phospholipase A2 activity as well as on carrageenan-induced paw oedema in mice. Extracts (200 mg/kg) or indomethacin (50 mg/kg) as positive control were injected intraperitoneally for albino mice prior to the induction of the oedema by carrageenan. Antioxidant activities were investigated using various complementary methods. Results Flower extracts contained a high level of polyphenolics (17.10-52.70 mg GAE/g) and flavonoids (74.20-100.60 mg QE/g), which correlate with its appreciable antioxidant potential in β-carotene peroxidation (IC50 value: 12.50-27.10 μg/mL), DPPH(•) radical-scavenging (IC50 value: 0.20-0.40 mg/mL), Fe(3+ )reducing (EC50 value: 0.10-0.14 mg/mL) and Fe(2+ )chelating (IC50 value: 0.20-0.60 mg/mL) assays. These extracts were effective in inhibiting cancer cell growth (IC50 value: 62.0-63.25 μg/mL). Besides, the ethyl acetate extract inhibited phospholipase A2 activity (IC50 value: 2.97 mg/mL) and reduced the paw oedema in mice (from 0.38 ± 0.01 to 0.24 ± 0.01 cm), 4 h post-carrageenan challenge. Conclusion These data suggest that D. simplex may be useful as a candidate in the treatment of inflammation and the colon cancer.

  6. Evolution, expression differentiation and interaction specificity of heterotrimeric G-protein subunit gene family in the mesohexaploid Brassica rapa.

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    Gulab C Arya

    Full Text Available Heterotrimeric G-proteins, comprising of Gα, Gβ, and Gγ subunits, are important signal transducers which regulate many aspects of fundamental growth and developmental processes in all eukaryotes. Initial studies in model plants Arabidopsis and rice suggest that the repertoire of plant G-protein is much simpler than that observed in metazoans. In order to assess the consequence of whole genome triplication events within Brassicaceae family, we investigated the multiplicity of G-protein subunit genes in mesohexaploid Brassica rapa, a globally important vegetable and oilseed crop. We identified one Gα (BraA.Gα1, three Gβ (BraA.Gβ1, BraA.Gβ2, and BraA.Gβ3, and five Gγ (BraA.Gγ1, BraA.Gγ2, BraA.Gγ3, BraA.Gγ4, and BraA.Gγ5 genes from B. rapa, with a possibility of 15 Gαβγ heterotrimer combinations. Our analysis suggested that the process of genome triplication coupled with gene-loss (gene-fractionation phenomenon have shaped the quantitative and sequence diversity of G-protein subunit genes in the extant B. rapa genome. Detailed expression analysis using qRT-PCR assays revealed that the G-protein genes have retained ubiquitous but distinct expression profiles across plant development. The expression of multiple G-protein genes was differentially regulated during seed-maturation and germination stages, and in response to various phytohormone treatments and stress conditions. Yeast-based interaction analysis showed that G-protein subunits interacted in most of the possible combinations, with some degree of subunit-specific interaction specificity, to control the functional selectivity of G-protein heterotrimer in different cell and tissue-types or in response to different environmental conditions. Taken together, this research identifies a highly diverse G-protein signaling network known to date from B. rapa, and provides a clue about the possible complexity of G-protein signaling networks present across globally important Brassica

  7. 天山野果林种子植物区系分析%Spermatophyte floras in the wild fruit forest in Tianshan Mountains

    Institute of Scientific and Technical Information of China (English)

    布海丽且姆·阿卜杜热合曼; 刘会良; 刘娜; 张道远; 管开云

    2016-01-01

    天山野果林现存于中亚和我国西部山地,植物多样性丰富.根据野外调查以及已有收集资料,统计天山野果林及其附近的种子植物,以此为基础展开种子植物区系分析.研究表明:天山野果林的野生种子植物有849种,归属于330属75科;优势科为菊科(Compositae)(43属,91种),蔷薇科(Rosaceae)(23属,125种),禾本科(Gramineae)(25属,50种)、十字花科(Brassicaceae)(20属,32种)、忍冬科(Caprifoliaceae)(3属,21种)、豆科(Leguminosae)(17属,47种)、毛茛科(Ranunculaceae)(10属,33种)、百合科(Liliaceae)(7属,32种)、唇形花科(Lamiaceae)(21属,45种)、蓼科(Polygonaceae)(5属,22种)、伞形科(Umbellales)(15属,24种)等11科,表征科为蔷薇科(Rosaceae)、忍冬科(Caprifoliaceae)和毛茛科(Ranunculaceae)等3科;优势属为蔷薇属(Rosa)(27种)和忍冬属(Lonicera)(17种),表征属为蔷薇属(Rosa).天山野果林植物区系地理成分复杂,划分为15个分布区类型和15个变型,以温带分布的科属为主,分别占野果林总属数的62.16%和69.62%(除去广布种),仅有1个中国特有属.

  8. An ethnobotanical study of wild edible plants in Bulgaria

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    Anely Nedelcheva

    2013-11-01

    Full Text Available Background: This study focuses on the wild vascular plants traditionally used for human consumption in Bulgaria and its aim is to present data about the richness and diversity of plants used as a nutrition source, about folk botanical knowledge and to give an impression about their contemporary state and development in relation to natural plant resources and traditional food culture. The study covers the period from the end of 19th to the middle of the 20th century. Materials and Methods: The study gathered data from more than 30 ethnobotanical and ethnographical sources which provide information for the end of 19th to the middle of the 20th century, in addition to field data collected through semi-structured interviews. Results: A total of 88 wild plant species, 25 families and 52 genera were identified as edible plants. Prevailing are representatives of Rosaceae, Amaranthaceae, Amaryllidaceae, Brassicaceae, Compositae and Polygonaceae. The largest numbers of species are from Allium, Rumex and Chenopodium. Similar in number are the species which are used as leaves (43 and fruits (38, followed by young shoots (9, seeds (7, roots (4, bulbs (4 and inflorescences (2. The largest group is from plants whose aboveground parts are gathered mainly during the spring and used as vegetables. Important species are Urtica dioica, Rumex acetosa, Rumex patientia, Chenopodium album, Atriplex prostrata and Amaranthus retroflexus. The fruits are mostly gathered from Rosaceae, Adoxaceae, Ericaceae and Vitaceae shrubs and trees. The study determined eight major food groups: fresh greens and fruits, stuffed pies, stewed and boiled greens, boiled cereals, sweets (boiled fruit products, dried fruits, snacks and lacto-fermented products. The predominant taste is salty-sour-spicy. Some of wild foods are also used for medicinal purposes and included in preventing or healing diets. Conclusion: Today’s traditional diet is very different from the past. Bulgaria provides a

  9. Genes of the most conserved WOX clade in plants affect root and flower development in Arabidopsis

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    Moreau Hervé

    2008-10-01

    Full Text Available Abstract Background The Wuschel related homeobox (WOX family proteins are key regulators implicated in the determination of cell fate in plants by preventing cell differentiation. A recent WOX phylogeny, based on WOX homeodomains, showed that all of the Physcomitrella patens and Selaginella moellendorffii WOX proteins clustered into a single orthologous group. We hypothesized that members of this group might preferentially share a significant part of their function in phylogenetically distant organisms. Hence, we first validated the limits of the WOX13 orthologous group (WOX13 OG using the occurrence of other clade specific signatures and conserved intron insertion sites. Secondly, a functional analysis using expression data and mutants was undertaken. Results The WOX13 OG contained the most conserved plant WOX proteins including the only WOX detected in the highly proliferating basal unicellular and photosynthetic organism Ostreococcus tauri. A large expansion of the WOX family was observed after the separation of mosses from other land plants and before monocots and dicots have arisen. In Arabidopsis thaliana, AtWOX13 was dynamically expressed during primary and lateral root initiation and development, in gynoecium and during embryo development. AtWOX13 appeared to affect the floral transition. An intriguing clade, represented by the functional AtWOX14 gene inside the WOX13 OG, was only found in the Brassicaceae. Compared to AtWOX13, the gene expression profile of AtWOX14 was restricted to the early stages of lateral root formation and specific to developing anthers. A mutational insertion upstream of the AtWOX14 homeodomain sequence led to abnormal root development, a delay in the floral transition and premature anther differentiation. Conclusion Our data provide evidence in favor of the WOX13 OG as the clade containing the most conserved WOX genes and established a functional link to organ initiation and development in Arabidopsis, most

  10. Cytotoxic and antioxidant activity of 4-methylthio-3-butenyl isothiocyanate from Raphanus sativus L. (Kaiware Daikon) sprouts.

    Science.gov (United States)

    Papi, Alessio; Orlandi, Marina; Bartolini, Giovanna; Barillari, Jessica; Iori, Renato; Paolini, Moreno; Ferroni, Fiammetta; Grazia Fumo, Maria; Pedulli, Gian Franco; Valgimigli, Luca

    2008-02-13

    There is high current interest in the chemopreventive potential of Brassica vegetables (cruciferae), particularly due to their content in glucosinolates (GL), which upon myrosinase hydrolysis release the corresponding isythiocyanates (ITC). Some ITCs, such as sulforaphane (SFN) from broccoli ( Brassica oleacea italica), have been found to possess anticancer activity through induction of apoptosis in selected cell lines, as well as indirect antioxidant activity through induction of phase II detoxifying enzymes. Japanese daikon ( Raphanus sativus L.) is possibly the vegetable with the highest per capita consumption within the Brassicaceae family. Thanks to a recently improved gram scale production process, it was possible to prepare sufficient amounts of the GL glucoraphasatin (GRH) as well as the corresponding ITC 4-methylthio-3-butenyl isothiocyanate (GRH-ITC) from its sprouts. This paper reports a study on the cytotoxic and apoptotic activities of GRH-ITC compared with the oxidized counterpart 4-methylsulfinyl-3-butenyl isothiocyanate (GRE-ITC) on three human colon carcinoma cell lines (LoVo, HCT-116, and HT-29) together with a detailed kinetic investigation of the direct antioxidant/radical scavenging ability of GRH and GRH-ITC. Both GRH-ITC and GRE-ITC reduced cell proliferation in a dose-dependent manner and induced apoptosis in the three cancer cell lines. The compounds significantly ( p GRH-ITC treatment was shown to have no toxicity with regard to normal human lymphocytes (-15 +/- 5%) in comparison with SFN (complete growth inhibition). GRH and GRH-ITC were able to quench the 2,2-diphenyl-1-picrylhydrazyl radical, with second-order rate constants of 14.0 +/- 2.8 and 43.1 +/- 9.5 M(-1) s(-1), respectively (at 298 K in methanol), whereas the corresponding value measured here for the reference antioxidant alpha-tocopherol was 425 +/- 40 M (-1) s (-1). GRH reacted with H2O2 and tert-butyl hydroperoxide in water (pH 7.4) at 37 degrees C, with rate constants of 1

  11. Depletion of Key Meiotic Genes and Transcriptome-Wide Abiotic Stress Reprogramming Mark Early Preparatory Events Ahead of Apomeiotic Transition

    Science.gov (United States)

    Shah, Jubin N.; Kirioukhova, Olga; Pawar, Pallavi; Tayyab, Muhammad; Mateo, Juan L.; Johnston, Amal J.

    2016-01-01

    Molecular dissection of apomixis – an asexual reproductive mode – is anticipated to solve the enigma of loss of meiotic sex, and to help fixing elite agronomic traits. The Brassicaceae genus Boechera comprises of both sexual and apomictic species, permitting comparative analyses of meiotic circumvention (apomeiosis) and parthenogenesis. Whereas previous studies reported local transcriptome changes during these events, it remained unclear whether global changes associated with hybridization, polyploidy and environmental adaptation that arose during evolution of Boechera might serve as (epi)genetic regulators of early development prior apomictic initiation. To identify these signatures during vegetative stages, we compared seedling RNA-seq transcriptomes of an obligate triploid apomict and a diploid sexual, both isolated from a drought-prone habitat. Uncovered were several genes differentially expressed between sexual and apomictic seedlings, including homologs of meiotic genes ASYNAPTIC 1 (ASY1) and MULTIPOLAR SPINDLE 1 (MPS1) that were down-regulated in apomicts. An intriguing class of apomict-specific deregulated genes included several NAC transcription factors, homologs of which are known to be transcriptionally reprogrammed during abiotic stress in other plants. Deregulation of both meiotic and stress-response genes during seedling stages might possibly be important in preparation for meiotic circumvention, as similar transcriptional alteration was discernible in apomeiotic floral buds too. Furthermore, we noted that the apomict showed better tolerance to osmotic stress in vitro than the sexual, in conjunction with significant upregulation of a subset of NAC genes. In support of the current model that DNA methylation epigenetically regulates stress, ploidy, hybridization and apomixis, we noted that ASY1, MPS1 and NAC019 homologs were deregulated in Boechera seedlings upon DNA demethylation, and ASY1 in particular seems to be repressed by global DNA

  12. The first report of Pb and Zn accumulation in some native plants from the Peruvian Andes

    Science.gov (United States)

    Bech, Jaume; Duran, Paola; Poma, Wilfredo; Sánchez, Isidoro; Barceló, Juan; Roca, Núria; Boluda, Rafael; Roca-Pérez, Luís.; Poschenrieder, Charlotte

    2010-05-01

    Until recent decades little has been known about the remediation of mining sites using metalophytes in Latin America. Metal mining has helped to create severe and diverse environmental problems. The present study proposed to identify and characterize spontaneously growing heavy metal tolerant plant species in the area around the polimetalic mine in Hualgayoc (Cajamarca, Peru). These species are potentially useful for phytorremediation. Plant and soils from their rhizosphere were sampled and analized for concentration of As, Fe, Mn, Pb and Zn. Translocation Factor (TF) defined the metals concentrations ratio between shoots and root biomass and Shoot Accumulation Factor (SAF) the metal concentration ratio between shoot and soil concentration were determined and used to measure the effectiveness of a plant in concentrating metals into its biomass. The soils were neutral pH (7,4±0,5) with variable content of organic carbon (2,4±1,1) and loam texture: sand (42,9±10,8) and clay (16,7±4,6). According to the total metals, all samples exceeded toxicity thresholds, high Pb (20016 ± 32559 mg•kg-1) and Zn (22512 ± 13056 mg•kg-1) concentrations were detected. High shoot Pb and Zn concentrations were found in Plantaginaceae Plantago orbignyana (6998 and 9617 μg/g); Brassicaceae Lepidium bipinnatifidum (6886 and 5034 mg•kg-1) and Asteraceae Senecio sp (4253 and 3870 mg•kg-1) and Baccharis latifolia (2554 and 1284 mg•kg-1 respectively). The high values of TFs indicates that the plants effectively traslocated metales. Lepidium bipinnatifidum shows the highest TFs values (143 in Pb and 21,5 in Zn). The SAF values were much lower than those reported for other species such as Paspalum sp in the Peruvian copper mine, which may be due to a high top soil Pb and Zn concentrations. These species can surely be considered as interesting for phytoextraction, due not only to its accumulative capacity but also since they showed an elevated transfer factor and grew in the

  13. Comparison of identification methods for resistance to Sclerotinia sclerotiorum and screening of resistant materials in cauliflower.%花椰菜菌核病抗性鉴定方法比较及抗病种质资源筛选

    Institute of Scientific and Technical Information of China (English)

    孙溶溶; 彭真; 程琳; 邵泰良; 卢钢

    2011-01-01

    Three identification methods for the resistance to Sclerotinia sclerotiorum previously-reported in Brassicaceae crops were compared using 5 cauliflower varieties under the same condition to develop the effective screening technique in cauliflower. The results showed that the correlation between inoculating mycelium agar disk to leaf axil at seedling stage, or inoculating mycelium agar disk to live leaf at heading stage and field inoculation were highly significant (r= 0.885 9 and 0.926 6, respectively), so these two methods could well identify resistance and susceptibility of cauliflower varieties. The method of inoculating mycelium agar disk to in vitro seedling leaf was not suitable for resistance identification of cauliflower. To screen resistant sources of cauliflower against S. Sclerotiorum, 21 breeding materials were tested with the method of inoculating mycelium agar disk to leaf axil at heading stage, using cauliflower variety 'nongle 45 days' as control. The results showed that there were two high resistant materials, 'shenliang golden flower' and 'changsheng 65 days' .%采用已报道的3种十字花科作物菌核病抗病性鉴定方法,在同一条件下,对5个已知抗性的花椰菜品种进行鉴定比较.结果表明:结球期琼脂块叶腋接种法、营养生长期琼脂块活体叶片法与大田接种鉴定的相关系数分别达到0.885 9和0.926 6,可有效反映抗、感品种的差异,可用于花椰菜菌核病抗性的快速鉴定;但营养生长期琼脂块离体叶片法用于抗性鉴定的效果不好;根据抗性鉴定方法的比较结果,选用结球期琼脂块叶腋接种法,以‘农乐45天’为对照,对21份花椰菜材料进行抗性鉴定,筛选获得了‘神良金花’和‘长胜65天’2份高抗材料.

  14. Anti-inflammatory and anti-apoptotic effects of (RS)-glucoraphanin bioactivated with myrosinase in murine sub-acute and acute MPTP-induced Parkinson's disease.

    Science.gov (United States)

    Galuppo, Maria; Iori, Renato; De Nicola, Gina Rosalinda; Bramanti, Placido; Mazzon, Emanuela

    2013-09-01

    This study was focused on the possible neuroprotective role of (RS)-glucoraphanin, bioactivated with myrosinase enzyme (bioactive RS-GRA), in an experimental mouse model of Parkinson's disease (PD). RS-GRA is one of the most important glucosinolates, a thiosaccharidic compound found in Brassicaceae, notably in Tuscan black kale seeds. RS-GRA was extracted by one-step anion exchange chromatography, further purified by gel-filtration and analyzed by HPLC. Following, pure RS-GRA was characterized by (1)H and (13)C NMR spectrometry and the purity was assayed by HPLC analysis of the desulfo-derivative according to the ISO 9167-1 method. The obtained purity has been of 99%. To evaluate the possible pharmacological efficacy of bioactive RS-GRA (administrated at the dose of 10mg/kg, ip +5μl/mouse myrosinase enzyme), C57BL/6 mice were used in two different sets of experiment (in order to evaluate the neuroprotective effects in different phases of the disease), according to an acute (2 injections·40mg/kg MPTP) and a sub-acute (5 injections·20mg/kg MPTP) model of PD. Behavioural test, body weight changes measures and immunohistochemical localization of the main PD markers were performed and post-hoc analysis has shown as bioactive RS-GRA is able to reduce dopamine transporter degradation, tyrosine hydroxylase expression, IL-1β release, as well as the triggering of neuronal apoptotic death pathway (data about Bax/Bcl-2 balance and dendrite spines loss) and the generation of radicalic species by oxidative stress (results focused on nitrotyrosine, Nrf2 and GFAP immunolocalization). These effects have been correlated with the release of neurotrophic factors, such as GAP-43, NGF and BDNF, that, probably, play a supporting role in the neuroprotective action of bioactive RS-GRA. Moreover, after PD-induction mice treated with bioactive RS-GRA are appeared more in health than animals that did not received the treatment both for phenotypic behaviour and for general condition

  15. Chemical composition of halophytes from the Neusiedler Lake region in Austria.

    Science.gov (United States)

    Albert, R; Popp, Marianne

    1977-06-01

    The ionic relations in halophytes from the region east of Neusiedler Lake in Austria have been investigated. The study encompasses the following compounds: Na, K, Mg, Ca; Cl, SO4, phosphate, nitrate, and organic acids.The ionic composition varies substantially among the species investigated. Frequently a specific pattern of ion content can be found within a specific taxon. a) Dicotyledons: Extraordinary accumulation of sodium, high intake of inorganic ions (mainly Cl, less SO4), and regular occurrence of free oxalate, causing low Ca-concentrations, are typical for Chenopodiaceae and Caryophyllaceae (Spergularia media). Lepidium crassifolium shows similar sodium preponderance accompanied by high levels of SO4, Cl, and organic anions other than oxalate (mainly citrate and malate). The remaining dicotyledons show rather moderate salt content; Asteraceae and Cichoriaceae prefer Cl, and Plantago maritima accumulates high amounts of SO4 as well as Cl. Malate and citrate are, without exception, the main organic anions. The K:Na ratios in dicotyledons (esp. Chenopodiaceae and Lepidium-Brassicaceae) lie far below unity. b) Monocotyledons: In marked contrast, Poaceae, Cyperaceae, and Juncaceae are characterized by a general low salt status. With few exceptions, Cl is stored as the main inorganic anion, phosphate reaches higher levels than in dicotyledons and in many cases lies in nearly the same concentration range as SO4. The pattern of organic anions with malate and citrate as the main acids, does not basically differ from nonhalophilous species. In any case, K:Na ratio exceeds unity. Triglochin maritimum is the only monocotyle species exhibiting as high salt content and low K:Na ratios as dicotyledons. Nitrate and phosphate are of minor quantitative importance with regard to their osmotic efficiency; their mEq percentage of the total anion concentration range between 0.03 to 2.6 (NO3) and 0.5 to 13.6 (phosphate), respectively.The results are discussed from different

  16. In vitro assessment of antiproliferative action selectivity of dietary isothiocyanates for tumor versus normal human cells

    Directory of Open Access Journals (Sweden)

    Konić-Ristić Aleksandra

    2016-01-01

    Full Text Available Background/Aim. Numerous epidemiological studies have shown beneficial effects of cruciferous vegetables consumption in cancer chemoprevention. Biologically active compounds of different Brassicaceae species with antitumor potential are isothiocyanates, present in the form of their precursors - glucosinolates. The aim of this study was to determine the selectivity of antiproliferative action of dietary isothiocyanates for malignant versus normal cells. Methods. Antiproliferative activity of three isothiocyanates abundant in human diet: sulforaphane, benzyl isothiocyanate (BITC and phenylethyl isothiocyanate, on human cervix carcinoma cell line - HeLa, melanoma cell line - Fem-x, and colon cancer cell line - LS 174, and on peripheral blood mononuclear cells (PBMC, with or without mitogen, were determined by MTT colorimetric assay 72 h after their continuous action. Results. All investigated isothiocyanates inhibited the proliferation of HeLa, Fem-x and LS 174 cells. On all cell lines treated, BITC was the most potent inhibitor of cell proliferation with half-maximum inhibitory concentration (IC50 values of 5.04 mmoL m-3 on HeLa cells, 2.76 mmol m-3 on Fem-x, and 14.30 mmol m-3 on LS 174 cells. Antiproliferative effects on human PBMC were with higher IC50 than on malignant cells. Indexes of selectivity, calculated as a ratio between IC50 values obtained on PBMC and malignant cells, were between 1.12 and 16.57, with the highest values obtained for the action of BITC on melanoma Fem-x cells. Conclusion. Based on its antiproliferative effects on malignant cells, as well as the selectivity of the action to malignant vs normal cells, benzyl isothiocyanate can be considered as a promising candidate in cancer chemoprevention. In general, the safety of investigated compounds, in addition to their antitumor potential, should be considered as an important criterion in cancer chemoprevention. Screening of selectivity is a plausible approach to the evaluation

  17. An advanced field experimental design to assess plant tolerance to heavy metal pollution

    Science.gov (United States)

    Łopata, Barbara; Szarek-Łukaszewska, Grażyna; Babst-Kostecka, Alicja

    2016-04-01

    the plant development, 2) the percentage of leaves showing visible symptoms of Zn toxicity (i.e. leaf chlorosis, mottling, necrosis, anthocyanescence), and measurement of 3) number of stems, 4) length of the longest stem, 5) effective photosystem II yield, and 6) chlorophyll content. Upon termination of the experiment, we are going to harvest all plant material for genetic, physiological and chemical analyses. This ongoing project is conducted in southern Poland and as a study object we chose the model pseudometallophyte Arabidopsis halleri (Brassicaceae). However, our enhanced experimental design can easily be adapted to other locations and species, thereby facilitating the intercomparisons between results obtained by different researchers and from a variety of geographic locations. The obtained plant material can be used in interdisciplinary approaches in support of efforts to improve environmental health and landscape quality at polluted sites.

  18. Remote sensing of plant trait responses to field-based plant-soil feedback using UAV-based optical sensors

    Science.gov (United States)

    van der Meij, Bob; Kooistra, Lammert; Suomalainen, Juha; Barel, Janna M.; De Deyn, Gerlinde B.

    2017-02-01

    Plant responses to biotic and abiotic legacies left in soil by preceding plants is known as plant-soil feedback (PSF). PSF is an important mechanism to explain plant community dynamics and plant performance in natural and agricultural systems. However, most PSF studies are short-term and small-scale due to practical constraints for field-scale quantification of PSF effects, yet field experiments are warranted to assess actual PSF effects under less controlled conditions. Here we used unmanned aerial vehicle (UAV)-based optical sensors to test whether PSF effects on plant traits can be quantified remotely. We established a randomized agro-ecological field experiment in which six different cover crop species and species combinations from three different plant families (Poaceae, Fabaceae, Brassicaceae) were grown. The feedback effects on plant traits were tested in oat (Avena sativa) by quantifying the cover crop legacy effects on key plant traits: height, fresh biomass, nitrogen content, and leaf chlorophyll content. Prior to destructive sampling, hyperspectral data were acquired and used for calibration and independent validation of regression models to retrieve plant traits from optical data. Subsequently, for each trait the model with highest precision and accuracy was selected. We used the hyperspectral analyses to predict the directly measured plant height (RMSE = 5.12 cm, R2 = 0.79), chlorophyll content (RMSE = 0.11 g m-2, R2 = 0.80), N-content (RMSE = 1.94 g m-2, R2 = 0.68), and fresh biomass (RMSE = 0.72 kg m-2, R2 = 0.56). Overall the PSF effects of the different cover crop treatments based on the remote sensing data matched the results based on in situ measurements. The average oat canopy was tallest and its leaf chlorophyll content highest in response to legacy of Vicia sativa monocultures (100 cm, 0.95 g m-2, respectively) and in mixture with Raphanus sativus (100 cm, 1.09 g m-2, respectively), while the lowest values (76 cm, 0.41 g m-2, respectively

  19. The importance of a taste. A comparative study on wild food plant consumption in twenty-one local communities in Italy

    Directory of Open Access Journals (Sweden)

    Binda Riccardo

    2007-05-01

    Full Text Available Abstract A comparative food ethnobotanical study was carried out in twenty-one local communities in Italy, fourteen of which were located in Northern Italy, one in Central Italy, one in Sardinia, and four in Southern Italy. 549 informants were asked to name and describe food uses of wild botanicals they currently gather and consume. Data showed that gathering, processing and consuming wild food plants are still important activities in all the selected areas. A few botanicals were quoted and cited in multiple areas, demonstrating that there are ethnobotanical contact points among the various Italian regions (Asparagus acutifolius, Reichardia picroides, Cichorium intybus, Foeniculum vulgare, Sambucus nigra, Silene vulgaris, Taraxacum officinale, Urtica dioica, Sonchus and Valerianella spp.. One taxon (Borago officinalis in particular was found to be among the most quoted taxa in both the Southern and the Northern Italian sites. However, when we took into account data regarding the fifteen most quoted taxa in each site and compared and statistically analysed these, we observed that there were a few differences in the gathering and consumption of wild food plants between Northern and Southern Italy. In the North, Rosaceae species prevailed, whereas in the South, taxa belonging to the Asteraceae, Brassicaceae, and Liliaceae s.l. families were most frequently cited. We proposed the hypothesis that these differences may be due to the likelihood that in Southern Italy the erosion of TK on wild vegetables is taking place more slowly, and also to the likelihood that Southern Italians' have a higher appreciation of wild vegetables that have a strong and bitter taste. A correspondence analysis confirmed that the differences in the frequencies of quotation of wild plants within the Northern and the Southern Italian sites could be ascribed only partially to ethnic/cultural issues. An additional factor could be recent socio-economic shifts, which may be having

  20. Floristic composition and vegetation analysis in Hail region north of central Saudi Arabia.

    Science.gov (United States)

    El-Ghanim, Wafaa M; Hassan, Loutfy M; Galal, Tarek M; Badr, Abdelfattah

    2010-04-01

    In this study, 19 sites representing different habitats in Hail region were regularly visited for two years, in each site 2-5 stands were selected for investigating floristic composition and vegetation types in the area. A total of 124 species representing 34 families were recorded. The family Asteraceae is represented by the highest number of species (21 species) followed by the Poaceae (17 species) and the Brassicaceae (10 species) whereas, 15 families including Acanthaceae, Convolvulaceae, Moraceae, Nyctaginaceae and Primulaceae, are represented by a single species each. Chronological analysis of the vegetation in the area revealed the domination of Saharo-Sindian elements in the wild vegetations and of weedy species in the cultivated plots. Therophytes and chamaephytes are the dominating life forms of the vegetation spectra; therophytes represent 49.20% and chamaephytes represent 29.00% of the total species in the study area. Application of TWINISPAN and DECORANA classification and ordination techniques to the data produced seven vegetation groups. Ruderal habitats comprised two small groups A and F dominated by Phragmites australis and Imperata cylindrical (A), Euphorbia peplus and Sisymbrium irio (F), respectively. Two vegetation groups (B and G) have been recognized in the mountains and slopes dominated by Launaea mucronata, Trigonella stellata (B) and Ficus palmate and Fagonia bruguieri (G). Other two groups (C and E) inhabit the desert and mountainous wadies; these are represented by Gymnocarpos decandrus and Ochradenus baccatus (C) and Senecio glaucus subsp. coronopifolius and Rumex equisetiforme (E). On the other hand, one group (D) inhabits the cultivated plots and is represented by Plantago albicans and Rumex vesicarius, the last group also includes species restricted to the sand dune habitat of the Al-Nafud desert north of Hail city and represented by Calligonum polygonoides and Halyxolon salicornicum. The vegetation analysis indicated the invasion of

  1. Alyssum homolocarpum seeds: phytochemical analysis and effects of the seed oil on neural stem cell proliferation and differentiation.

    Science.gov (United States)

    Hamedi, Azadeh; Ghanbari, Amir; Razavipour, Razieh; Saeidi, Vahid; Zarshenas, Mohammad M; Sohrabpour, Maryam; Azari, Hassan

    2015-07-01

    Pharmacognostic evaluation of medicinal plants may assess their current applications and possibly results in finding new active components. In this study, ash and extractive values and high performance thin layer chromatography fingerprints of Alyssum homolocarpum (Brassicaceae) seed extracts were investigated to elucidate its composition. Differential scanning calorimetry and gas chromatography-mass spectrometry analysis were employed to determine the components of A. homolocarpum seed oil (AHO). Neurosphere assay, in vitro differentiation and immunofluorescence analysis were performed to evaluate the effects of oral administration of AHO (0.5 or 1 g/kg/day for 14 days) on proliferation and differentiation of neural stem cells (NSCs) in adult male BALB/c mice. Total, acid-insoluble and water-soluble ash values were determined as 45.83 ± 5.85, 6.67 ± 2.89 and 28.33 ± 2.89 mg/g, respectively. The extractive values were 4.90, 0.43 and 0.56 % (w/w) for n-hexane, dichloromethane and ethanolic extracts, respectively. Interestingly, AHO was mainly composed of α-linolenic acid (89.71 %), β-sitosterol (3.3 mg/g) and campesterol (0.86 mg/g). Administration of AHO at 1 g/kg/day significantly increased proliferation of NSCs, as evidenced by an increase in mean neurosphere-forming frequency per brain (872.7 ± 15.17) and neurosphere diameter (101 ± 2.48 µm) compared to the control group (424.3 ± 59.29 and 78.63 ± 1.7 µm, respectively; P < 0.05). AHO treatment did not affect in vitro differentiation of the harvested NSCs. Our data show that A. homolocarpum seed oil is a rich source of α-linolenic acid and β-sitosterol with potential therapeutic application to enhance NSC proliferation and recruitment in neurological diseases.

  2. Resilience of soil microbial and nematode communities after biofumigant treatment with defatted seed meals

    Science.gov (United States)

    Mocali, Stefano; Landi, Silvia; Curto, Giovanna; Elisabetta, Dallavalle; Infantino, Alessandro; Colzi, Claudia; d'Errico, Giada; Roversi, Pio Federico; D'Avino, Lorenzo; Lazzeri, Luca

    2015-04-01

    The use of alternative biocidal compounds to replace chemical pesticides after the Directive 2009/128/EC has raised renewed interest in the biofumigation technique. In particular, the defatted seed meals (DSM) derived from brassicaceae plant tissues with high glucosinolate content represent an efficient practice to control soil-born plant pathogens and pests that can be applied in synergy to catch crop green manures. For a wider and safer application of this technique, the impacts on non-target soil microorganisms and free-living nematodes have to be investigated in more depth. In this pot-scale experiment a naturally nematode-infected soil was amended with a glucosinolate-containing DSM from Brassica carinata (CAR), a non-glucosinolate-containing DSM from sunflower (SUN) and the metham-sodium fumigant (VAP). Tomato plants were transplanted and checked for the presence of pests and/or pathogens and plant vigour. The response of soil microbial communities was assessed through 454-pyrosequencing analysis of bacterial 16S rRNA and fungal 18S rRNA genes, whereas nematode indices were applied to assess their community structure 0, 10, 32 and 62 days after the treatments. Significant shifts were observed among both bacterial and fungal communities, whereas various changes of nematode communities occurred depending on the nematode family. Similar changes initially occurred in both bacterial and fungal community structure in response to DSM and VAP amendments, but after 62 days fungal communities were more strongly shaped by VAP fumigation than bacteria. The non-biofumigant SUN treatment added organic matter into the soil inducing significant changes in microbial communities, but it was not effective against M. incognita root infestation. Although the free-living nematode structure was negatively influenced by all treatments, B. carinata DMS proved the best compromise between efficiency to control M. incognita and environmental impact. These results confirmed the

  3. The importance of a taste. A comparative study on wild food plant consumption in twenty-one local communities in Italy.

    Science.gov (United States)

    Ghirardini, Maria Pia; Carli, Marco; del Vecchio, Nicola; Rovati, Ariele; Cova, Ottavia; Valigi, Francesco; Agnetti, Gaia; Macconi, Martina; Adamo, Daniela; Traina, Mario; Laudini, Francesco; Marcheselli, Ilaria; Caruso, Nicolò; Gedda, Tiziano; Donati, Fabio; Marzadro, Alessandro; Russi, Paola; Spaggiari, Caterina; Bianco, Marcella; Binda, Riccardo; Barattieri, Elisa; Tognacci, Alice; Girardo, Martina; Vaschetti, Luca; Caprino, Piero; Sesti, Erika; Andreozzi, Giorgia; Coletto, Erika; Belzer, Gabriele; Pieroni, Andrea

    2007-05-04

    A comparative food ethnobotanical study was carried out in twenty-one local communities in Italy, fourteen of which were located in Northern Italy, one in Central Italy, one in Sardinia, and four in Southern Italy. 549 informants were asked to name and describe food uses of wild botanicals they currently gather and consume. Data showed that gathering, processing and consuming wild food plants are still important activities in all the selected areas. A few botanicals were quoted and cited in multiple areas, demonstrating that there are ethnobotanical contact points among the various Italian regions (Asparagus acutifolius, Reichardia picroides, Cichorium intybus, Foeniculum vulgare, Sambucus nigra, Silene vulgaris, Taraxacum officinale, Urtica dioica, Sonchus and Valerianella spp.). One taxon (Borago officinalis) in particular was found to be among the most quoted taxa in both the Southern and the Northern Italian sites. However, when we took into account data regarding the fifteen most quoted taxa in each site and compared and statistically analysed these, we observed that there were a few differences in the gathering and consumption of wild food plants between Northern and Southern Italy. In the North, Rosaceae species prevailed, whereas in the South, taxa belonging to the Asteraceae, Brassicaceae, and Liliaceae s.l. families were most frequently cited. We proposed the hypothesis that these differences may be due to the likelihood that in Southern Italy the erosion of TK on wild vegetables is taking place more slowly, and also to the likelihood that Southern Italians' have a higher appreciation of wild vegetables that have a strong and bitter taste. A correspondence analysis confirmed that the differences in the frequencies of quotation of wild plants within the Northern and the Southern Italian sites could be ascribed only partially to ethnic/cultural issues. An additional factor could be recent socio-economic shifts, which may be having a continued effort on

  4. 茉莉酸甲酯与水杨酸诱导的大白菜叶片与根系硫苷含量系统性变化研究%Leaf and root glucosinolate profiles of Chinese cabbage (Brassica rapa ssp. pekinensis) as a systemic response to methyl jasmonate and salicylic acid elicitation

    Institute of Scientific and Technical Information of China (English)

    Yun-xiang ZANG; Jia-li GE; Ling-hui HUANG; Fei GAO; Xi-shan LV; Wei-wei ZHENG; Seung-beom HONG; Zhu-jun ZHU

    2015-01-01

      结论:茉莉酸甲酯与水杨酸处理后,大白菜根系比叶片积累更多的硫苷,吲哚族硫苷比其他种类的硫苷积累更快;茉莉酸甲酯诱导硫苷合成的效果好于水杨酸,而且诱导时间更长;茉莉酸甲酯与水杨酸在诱导大白菜根系硫苷合成过程中具有反协同效应。%Glucosinolates (GSs) are an important group of defensive phytochemicals mainly found in Brassicaceae. Plant hormones jasmonic acid (JA) and salicylic acid (SA) are major regulators of plant response to pathogen attack. However, there is little information about the interactive effect of both elicitors on inducing GS biosynthesis in Chinese cabbage (Brassica rapa ssp. pekinensis). In this study, we applied different concentrations of methyl jasmonate (MeJA) and/or SA onto the leaf and root of Chinese cabbage to investigate the time-course interactive profiles of GSs. Re-gardless of the site of the elicitation and the concentrations of the elicitors, the roots accumulated much more GSs and were more sensitive and more rapidly responsive to the elicitors than leaves. Irrespective of the elicitation site, MeJA had a greater inducing and longer lasting effect on GS accumulation than SA. Al three components of indole GS (IGS) were detected along with aliphatic and aromatic GSs. However, IGS was a major component of total GSs that ac-cumulated rapidly in both root and leaf tissues in response to MeJA and SA elicitation. Neoglucobrassicin (neoGBC) did not respond to SA but to MeJA in leaf tissue, while it responded to both SA and MeJA in root tissue. Conversion of glucobrassicin (GBC) to neoGBC occurred at a steady rate over 3 d of elicitation. Increased accumulation of 4-methoxy glucobrassicin (4-MGBC) occurred only in the root irrespective of the type of elicitors and the site of elici-tation. Thus, accumulation of IGS is a major metabolic hallmark of SA-and MeJA-mediated systemic response sys-tems. SA exerted an antagonistic effect on

  5. Biodiversity in vegetable crops, a heritage to save: the case of Puglia region

    Directory of Open Access Journals (Sweden)

    Antonio Elia

    2013-03-01

    for which there is a strong link with the Puglia traditions and which are described in this review are: carota di Polignano (Polignano carrot and carota di sant’Ippazio (Saint Ippazio carrot (Apiaceae, cipolla di Acquaviva delle Fonti (Acquaviva delle Fonti onion and cipolla bianca di Margherita (Margherita white onion (Liliaceae, cima di rapa (broccoli raab (Brassicaceae, unripe melon - carosello, barattiere, meloncella, etc. (Cucurbitaceae, catalogna chicory - cicoria di Molfetta e cicoria di Galatina (Molfetta’s chicory and Galatina’s chicory (Asteraceae.

  6. Investigation and Control Technology of Potato Weed in Xihe County, Gansu Province%甘肃省西和县马铃薯田间杂草调查及其防治技术

    Institute of Scientific and Technical Information of China (English)

    叶文斌; 杨小录; 王让军

    2015-01-01

    Field survey results showed that there were a total of 17 kinds of potato weeds in spring planting fields, belonging to 10 families, in Xihe County of Gansu Province, of which three kinds were of Gramineae, accounting for 17.65 percent;four kinds of Asteraceae, accounting for 23.53%;two kinds of Caryophyllaceae and Polygonaceae each, accounting for 11.76%; and one kind of Brassicaceae, Chenopodiaceae, Lamiaceae, Solanaceae, Amaranthaceae, and Euphorbiaceae, accounting for 5.9%, respectively. Dominant species of potato weed were barnyard grass, green foxtail, cattle chickweed, smartweed flowers axillary, small pigweed, and cotton wool pale smartweed weed, which were a serious hazard, and so should be focused on prevention. As for the major weed species in potato fields in Xihe County, literature was collected, analyzed, and summarized, and corresponding control techniques were put forward as well, which might have important guiding significance for planting demonstration, standardized plant management technology and production of pollution­free potato products and services.%经田间调查结果表明,甘肃省西和县春植马铃薯田杂草共有10科17种,其中禾本科3种,占17.65%;菊科4种,占23.53%;石竹科和蓼科各2种,分别占11.76%;十字花科、藜科、唇形科、茄科、苋科、大戟科各1种,分别占5.9%。马铃薯田杂草优势种有稗草、狗尾草、牛繁缕、腋花蓼、小藜、绵毛酸模叶蓼是严重危害的杂草,应重点防治;针对甘肃西和马铃薯田间主要杂草种类,探讨和查阅文献资料总结,提出相应的防除技术,为种植示范、规范种植管理技术和生产无公害马铃薯产品服务都具有重要的指导意义。

  7. A Genome-Wide Analysis Reveals Stress and Hormone Responsive Patterns of TIFY Family Genes in Brassica rapa.

    Science.gov (United States)

    Saha, Gopal; Park, Jong-In; Kayum, Md Abdul; Nou, Ill-Sup

    2016-01-01

    The TIFY family is a plant-specific group of proteins with a diversity of functions and includes four subfamilies, viz. ZML, TIFY, PPD, and JASMONATE ZIM-domain (JAZ) proteins. TIFY family members, particularly JAZ subfamily proteins, play roles in biological processes such as development and stress and hormone responses in Arabidopsis, rice, chickpea, and grape. However, there is no information about this family in any Brassica crop. This study identifies 36 TIFY genes in Brassica rapa, an economically important crop species in the Brassicaceae. An extensive in silico analysis of phylogenetic grouping, protein motif organization and intron-exon distribution confirmed that there are four subfamilies of BrTIFY proteins. Out of 36 BrTIFY genes, we identified 21 in the JAZ subfamily, seven in the TIFY subfamily, six in ZML and two in PPD. Extensive expression profiling of 21 BrTIFY JAZs in various tissues, especially in floral organs and at different flower growth stages revealed constitutive expression patterns, which suggest that BrTIFY JAZ genes are important during growth and development of B. rapa flowers. A protein interaction network analysis also pointed to association of these proteins with fertility and defense processes of B. rapa. Using a low temperature-treated whole-genome microarray data set, most of the JAZ genes were found to have variable transcript abundance between the contrasting inbred lines Chiifu and Kenshin of B. rapa. Subsequently, the expression of all 21 BrTIFY JAZs in response to cold stress was characterized in the same two lines via qPCR, demonstrating that nine genes were up-regulated. Importantly, the BrTIFY JAZs showed strong and differential expression upon JA treatment, pointing to their probable involvement in JA-mediated growth regulatory functions, especially during flower development and stress responses. Additionally, BrTIFY JAZs were induced in response to salt, drought, Fusarium, ABA, and SA treatments, and six genes (BrTIFY3

  8. Expression profiling of Crambe abyssinica under arsenate stress identifies genes and gene networks involved in arsenic metabolism and detoxification

    Directory of Open Access Journals (Sweden)

    Kandasamy Suganthi

    2010-06-01

    Full Text Available Abstract Background Arsenic contamination is widespread throughout the world and this toxic metalloid is known to cause cancers of organs such as liver, kidney, skin, and lung in human. In spite of a recent surge in arsenic related studies, we are still far from a comprehensive understanding of arsenic uptake, detoxification, and sequestration in plants. Crambe abyssinica, commonly known as 'abyssinian mustard', is a non-food, high biomass oil seed crop that is naturally tolerant to heavy metals. Moreover, it accumulates significantly higher levels of arsenic as compared to other species of the Brassicaceae family. Thus, C. abyssinica has great potential to be utilized as an ideal inedible crop for phytoremediation of heavy metals and metalloids. However, the mechanism of arsenic metabolism in higher plants, including C. abyssinica, remains elusive. Results To identify the differentially expressed transcripts and the pathways involved in arsenic metabolism and detoxification, C. abyssinica plants were subjected to arsenate stress and a PCR-Select Suppression Subtraction Hybridization (SSH approach was employed. A total of 105 differentially expressed subtracted cDNAs were sequenced which were found to represent 38 genes. Those genes encode proteins functioning as antioxidants, metal transporters, reductases, enzymes involved in the protein degradation pathway, and several novel uncharacterized proteins. The transcripts corresponding to the subtracted cDNAs showed strong upregulation by arsenate stress as confirmed by the semi-quantitative RT-PCR. Conclusions Our study revealed novel insights into the plant defense mechanisms and the regulation of genes and gene networks in response to arsenate toxicity. The differential expression of transcripts encoding glutathione-S-transferases, antioxidants, sulfur metabolism, heat-shock proteins, metal transporters, and enzymes in the ubiquitination pathway of protein degradation as well as several unknown

  9. Biocide plants as a sustainable tool for the control of pests and pathogens in vegetable cropping systems

    Directory of Open Access Journals (Sweden)

    Trifone D'Addabbo

    2014-11-01

    Full Text Available Synthetic pesticides have played a major role in crop protection related to the intensification of agricultural systems. In the recent years, environmental side effects and health concerns raised by an indiscriminate use have led the EU to the ban of many synthetic pesticides. As a result of this drastic revision, currently there is a strong need for new and alternative pest control methods. An interesting source of biorational pesticides may be represented by the biocidal compounds naturally occurring in plants as products of the secondary metabolism. Groups of plant secondary metabolites most promising for the development of pesticidal formulations are glucosinolates, saponins, and more generally terpenoid phytoconstituents, such as essential oil and their constituents. Glucosinolates are thioglucosidic secondary metabolites occurring mainly in the Brassicaceae and, at a less extent, in Capparidaceae families. The incorporation of glucosinolate- containing plant material into the soil results in degradation products highly toxic to soilborne pest, pathogens and weeds. This practice, known as biofumigation, may be considered as an ecological alternative to soil toxic fumigants. Plant-derived saponins are triterpene glycosides present in top and root tissues of plant species of the families Leguminosae, Alliaceae, Asteraceae, Polygalaceae and Agavaceae. Saponins and saponin-rich plant materials have been also reported for a biocidal activity on phytoparasites and soilborne plant pathogens. Essential oils are volatile, natural, heterogeneous mixtures of single substances, mainly terpenes and phenolics, formed as secondary metabolites by aromatic plants belonging to several botanical families. Among terpenes, limonoid triterpenes have been demonstrated to possess interesting insecticidal, nematicidal and antifungal properties. Occurrence of these compounds is mainly limited to Meliaceae and Rutaceae. Alkaloids, phenolics, cyanogenic glucosides

  10. Identification of a Novel Proline-Rich Antimicrobial Peptide from Brassica napus.

    Directory of Open Access Journals (Sweden)

    Huihui Cao

    Full Text Available Proline-rich antimicrobial peptides (PR-AMPs are a group of cationic host defense peptides that are characterized by a high content of proline residues. Up to now, they have been reported in some insects, vertebrate and invertebrate animals, but are not found in plants. In this study, we performed an in silico screening of antimicrobial peptides, which led to discovery of a Brassica napus gene encoding a novel PR-AMP. This gene encodes a 35-amino acid peptide with 13 proline residues, designated BnPRP1. BnPRP1 has 40.5% identity with a known proline-rich antimicrobial peptide SP-B from the pig. BnPRP1 was artificially synthetized and cloned into the prokaryotic expression vector pET30a/His-EDDIE-GFP. Recombinant BnPRP1 was produced in Escherichia coli and has a predicted molecular mass of 3.8 kDa. Analysis of its activity demonstrated that BnPRP1 exhibited strong antimicrobial activity against Gram-positive bacterium, Gram-negative bacterium, yeast and also had strong antifungal activity against several pathogenic fungi, such as Sclerotinia sclerotiorum, Mucor sp., Magnaporthe oryzae and Botrytis cinerea. Circular dichroism (CD revealed the main secondary structure of BnPRP1 was the random coil. BnPRP1 gene expression detected by qRT-PCR is responsive to pathogen inoculation. At 48 hours after S. sclerotiorum inoculation, the expression of BnPRP1 increased significantly in the susceptible lines while slight decrease occurred in resistant lines. These suggested that BnPRP1 might play a role in the plant defense response against S. sclerotiorum. BnPRP1 isolated from B. napus was the first PR-AMP member that was characterized in plants, and its homology sequences were found in some other Brassicaceae plants by the genome sequences analysis. Compared with the known PR-AMPs, BnPRP1 has the different primary sequences and antimicrobial activity. Above all, this study gives a chance to cast a new light on further understanding about the AMPs' mechanism

  11. Strictosidine activation in Apocynaceae: towards a "nuclear time bomb"?

    Directory of Open Access Journals (Sweden)

    Guirimand Grégory

    2010-08-01

    strictosidine vacuolar pool upon enzyme-substrate reunion occurring during potential herbivore feeding constituting a so-called "nuclear time bomb" in reference to the "mustard oil bomb" commonly used to describe the myrosinase-glucosinolate defence system in Brassicaceae.

  12. Polyploid genome of Camelina sativa revealed by isolation of fatty acid synthesis genes

    Directory of Open Access Journals (Sweden)

    Shewmaker Christine K

    2010-10-01

    Full Text Available Abstract Background Camelina sativa, an oilseed crop in the Brassicaceae family, has inspired renewed interest due to its potential for biofuels applications. Little is understood of the nature of the C. sativa genome, however. A study was undertaken to characterize two genes in the fatty acid biosynthesis pathway, fatty acid desaturase (FAD 2 and fatty acid elongase (FAE 1, which revealed unexpected complexity in the C. sativa genome. Results In C. sativa, Southern analysis indicates the presence of three copies of both FAD2 and FAE1 as well as LFY, a known single copy gene in other species. All three copies of both CsFAD2 and CsFAE1 are expressed in developing seeds, and sequence alignments show that previously described conserved sites are present, suggesting that all three copies of both genes could be functional. The regions downstream of CsFAD2 and upstream of CsFAE1 demonstrate co-linearity with the Arabidopsis genome. In addition, three expressed haplotypes were observed for six predicted single-copy genes in 454 sequencing analysis and results from flow cytometry indicate that the DNA content of C. sativa is approximately three-fold that of diploid Camelina relatives. Phylogenetic analyses further support a history of duplication and indicate that C. sativa and C. microcarpa might share a parental genome. Conclusions There is compelling evidence for triplication of the C. sativa genome, including a larger chromosome number and three-fold larger measured genome size than other Camelina relatives, three isolated copies of FAD2, FAE1, and the KCS17-FAE1 intergenic region, and three expressed haplotypes observed for six predicted single-copy genes. Based on these results, we propose that C. sativa be considered an allohexaploid. The characterization of fatty acid synthesis pathway genes will allow for the future manipulation of oil composition of this emerging biofuel crop; however, targeted manipulations of oil composition and general

  13. Are plants growing at abandoned mine sites suitable for phytoremediation of contaminated soils?

    Science.gov (United States)

    Bini, Claudio; Buffa, Gabriella; Fontana, Silvia; Wahsha, Mohammad

    2013-04-01

    Plants growing on abandoned mine sites are of particular interest in the perspective to remediate contaminated soils by phytoremediation, a low cost and environmental friendly technique which uses metal-accumulator plants to clean up moderately contaminated areas. The choice of plants is a crucial aspect for the practical use of this technique, given the ability to accumulate metals in their tissues, being genetically tolerant to high metal concentrations. Up today, more than 400 native plants that hyperaccumulate metals are reported, Brassicaceae being the family with the largest number of hyperaccumulator species. For example, Alyssum bertoloni is well known as Ni accumulator, as well as Thlaspi caerulescens for Zn and Brassica napus for Pb. However, metal hyperaccumulation is not a common phenomenon in terrestrial higher plants, and many of the European hyperaccumulator plants are of small biomass, and have a slow growth rate. Therefore, there is an urgent need for surveying and screening of plants with ability to accumulate metals in their tissues and a relatively high biomass. In recent years, a survey of soils and plants growing on contaminated areas at several abandoned sulphide mines in Italy was carried out by working groups of the Universities of Florence, Siena, Cagliari, Bologna, Udine and Venice, in order to evaluate the ability of these plants to colonize mine waste and to accumulate metals, in the perspective of an ecological restoration of contaminated sites. We investigated the heavy metal concentration of the waste material, and the soils developed from, in order to determine the extent of heavy metal dispersion, and the uptake by plants, and deserved attention to wild plants growing at that sites, to find out new metal-tolerant species to utilize in soil remediation. Current results of these investigations, with particular emphasis on the Tuscan areas, are reported here. All the studied profiles are strongly enriched in metals; their

  14. Investigation and evaluation on wild oil plant resources in Hebei Zhangshiyan area%河北嶂石岩区域野生油脂植物资源调查与评价

    Institute of Scientific and Technical Information of China (English)

    闫路娜; 左惠凯

    2014-01-01

    通过野外调查、标本鉴定和数据信息查询,对河北嶂石岩区域分布的野生油脂植物资源的种类、含油量及蕴藏量进行了统计和分析。结果表明:河北嶂石岩区域共有油脂植物39科72属79种,占嶂石岩区域植物总数的35.91%;在物种组成上,以唇形科、菊科、蔷薇科、十字花科和豆科为优势类群;在生活型上,以草本植物数量为多,木本植物较少,分别占油脂植物的51.90%和37.97%;在含油量上,以含油量在10%~20%之间的植物种类最多,另有近一半的植物含油量在30%以上;在油脂组成成分上,以富含亚油酸、亚麻酸等多不饱和脂肪酸的种类为主,占油脂植物的72.15%。唇形科、菊科、十字花科、豆科、松科和胡桃科等植物因蕴藏丰富、含油量高、应用前景广阔,可作为河北嶂石岩区域野生油脂植物优先开发的重点。%Through field investigation, sample identification and data inquiry, the species, oil content and reserves of wild oil plant resources in Hebei Zhangshiyan area were statistically analysed. The results showed that 79 species, belonging to 72 genera and 39 families, were distributed in this area, accounting for 35. 91% of the total number of plants in Zhangshiyan area. From the perspective of species composi-tion, Lamiaceae, Asteraceae, Rosaceae, Cruciferae and Leguminosae were dominant groups. In terms of life form, the quantity of herb plants was more than woody plants, accounting for 51. 90% and 37. 97% of the oil plants respectively. In the aspect of oil content, the most species were the plants with oil content in the range of 10% -20% , and nearly half of the oil plants were found more than 30% . In terms of oil com-position, 72. 15% of oil plants were rich in linoleic acid, linolenic acid and other polyunsaturated fatty acids. The Lamiaceae, Asteraceae, Brassicaceae, Leguminosae, Pinaceae and Juglandaceae plants had the items of

  15. Research advances on Maca%玛咖的研究进展

    Institute of Scientific and Technical Information of China (English)

    许敏; 徐丽; 宋晖; 马清; 张译; 杨崇仁

    2015-01-01

    玛咖(Lepidium meyeniiWalp)(Maca)为十字花科独行菜属一年生或两年生草本植物,原产海拔3500~4500 m的南美安第斯山区,为当地常用蔬菜。我国本世纪初引种以来种植面积不断扩大,云南为主要种植地区。玛咖含有丰富的蛋白质、碳水化合物、脂肪酸、纤维、维生素和矿物质含量,具有较高的营养价值,有“南美人参”之誉。此外,玛咖含有玛咖酰胺、玛咖烯、生物碱、芥子油苷、甾醇和类固醇等主要次生代谢物。药理活性研究表明,玛咖具有抗疲劳、增强免疫力、提高生育力、抗炎症、抗癌、抗氧化、抗病毒、降血压、缓解抑郁和治疗女性更年期综合征等多种作用。前期大量文章已对玛咖的化学成分和生理活性研究进展进行综述。本文对玛咖的安全性评价、玛咖成分的检测方法以及以不同色型玛咖的成分比较分析研究概况进行综述。%Maca (Lepidium meyeniiWalp), an annual or biennial herb of Brassicaceae family, is native in the South American Andean mountain, especially above sea level to the altitude 3500~4500 m. Maca has been used as vegetable by the local people. Since the beginning of this century, Maca was introduced into China at the beginning of this century. Up to now, Maca has been planting widely in Yunnan province of China. Maca riches in proteins, carbohydrates, fatty acids, fibers, vitamins and mineralizes. It has high nutritional value as well as some secondary metabolites, such as macamides, macaenes, alkaloids, glucosinolates and steroids. It is reported that Maca has many biological activates, such as anti-fatigue, immune enhancing, fertility improving, anti-inflammation, anti-cancer, anti-oxidation, anti-virus, blood pressure lowering and treatment of female climacteric syndrome. Research advances in chemical constituents and biological activity of Maca has already been reviewed in previous articles. The current article

  16. 长三角及邻近地区138种草本植物 DNA C-值测定及其生物学意义%DNA C-values of 138 herbaceous species and their biological significance

    Institute of Scientific and Technical Information of China (English)

    郭水良; 于晶; 李丹丹; 周平; 方其; 印丽萍

    2015-01-01

    The DNA C-value is an important biological concept and it has been used in many areas of biological research. The C-value can be used as an index for evaluating angiosperm invasiveness. However, it is still uncertain how the DNA C-value influences plant invasiveness because there is a paucity of systematic experiments that test all the important aspects of this question. There is also a lack of data that identify the relationships between DNA C-value and invasiveness using invaders and non-invaders from the same genus or family. Therefore, expanding the database of plant DNA C-values is important for elucidating the mechanism by which the DNA C-value influences plant invasiveness. Using a cytometry method, we determined the DNA C-values for 138 herbaceous species collected from the Yangtze River Delta and its neighboring area. Among these species, 111 were newly reported. According to related literature and the plants′ distributions in artificial habitats, we also evaluated the weediness of these 138 species, and classified them using five grades:0, 1, 2, 3, and 4. Based on these data, we calculated the genome sizes of 127 species with known ploidy levels and compared the differences in the two nuclear values ( DNA C-value and genome size) between families, monocots and dicots, polypoid and diploid species, and invasive and non-invasive groups. The results showed that:(1) The average DNA C-value of the 138 herbaceous species was 1.55 pg, with the maximum 37.17 times greater than the minimum. The average genome size of the 127 species with known ploidy was 1.08 pg, with the maximum 34.11 times greater than the minimum;(2) We compared the average DNA C-value/genome size (pg) among Poaceae (2.6803/1.2436), Asteraceae (1.7007/1.2436) , Caryophyllaceae ( 1. 1612/1. 1842 ) , Brassicaceae ( 0. 9165/0. 8029 ) , Scrophulariaceae ( 0. 9164/0. 6314 ) , Polygonaceae (1.0003/0.7064), Labiatae (0.7990/0.7164), and Umbelliferae (0.7259/0.7259), and found that these two values

  17. A rich TILLING resource for studying gene function in Brassica rapa

    Directory of Open Access Journals (Sweden)

    Amoah Stephen

    2010-04-01

    Full Text Available Abstract Background The Brassicaceae family includes the model plant Arabidopsis thaliana as well as a number of agronomically important species such as oilseed crops (in particular Brassica napus, B. juncea and B. rapa and vegetables (eg. B. rapa and B. oleracea. Separated by only 10-20 million years, Brassica species and Arabidopsis thaliana are closely related, and it is expected that knowledge obtained relating to Arabidopsis growth and development can be translated into Brassicas for crop improvement. Moreover, certain aspects of plant development are sufficiently different between Brassica and Arabidopsis to warrant studies to be carried out directly in the crop species. However, mutating individual genes in the amphidiploid Brassicas such as B. napus and B. juncea may, on the other hand, not give rise to expected phenotypes as the genomes of these species can contain up to six orthologues per single-copy Arabidopsis gene. In order to elucidate and possibly exploit the function of redundant genes for oilseed rape crop improvement, it may therefore be more efficient to study the effects in one of the diploid Brassica species such as B. rapa. Moreover, the ongoing sequencing of the B. rapa genome makes this species a highly attractive model for Brassica research and genetic resource development. Results Seeds from the diploid Brassica A genome species, B. rapa were treated with ethyl methane sulfonate (EMS to produce a TILLING (Targeting Induced Local Lesions In Genomes population for reverse genetics studies. We used the B. rapa genotype, R-o-18, which has a similar developmental ontogeny to an oilseed rape crop. Hence this resource is expected to be well suited for studying traits with relevance to yield and quality of oilseed rape. DNA was isolated from a total of 9,216 M2 plants and pooled to form the basis of the TILLING platform. Analysis of six genes revealed a high level of mutations with a density of about one per 60 kb. This

  18. Caesium-137 root uptake by agricultural and wild crops in post-Chernobyl landscape: the possibilities for phytoremediation?

    Science.gov (United States)

    Paramonova, Tatiana; Shamshurina, Eugenia; Komissarova, Olga; Belyaev, Vladimir

    2015-04-01

    -14 times higher than in shoots); rape (Brassicaceae family) and potatoes (Solanaceae family) are characterized by similar Cs-137 concentrations in the structural parts (but note, that belowground part of the last is mostly represented by modified shoots); while galega and amaranth (Fabaceae and Amaranthaceae families respectively) are characterized by higher Cs-137 activity in aboveground part (4-6 times more than in roots). Therefore, meadow grasses and cereals that are true accumulators of Cs-137 seem to be useless for phytoremediation purposes, as 86-97% of the radionuclide inventory is associated with roots and remains in soil after cutting of aboveground parts. On the other hand, galega and amaranth could be considered as agricultural crops potentially being used for phytoremediation, since 87-93% of Cs-137 inventory is located in shoots. Potatoes having rather high aboveground biomass and easily removed from soil underground part could be also used for phytoremediation. However, it should be clearly understood that in total Cs-137 inventory in "soil-plant" system the annual amount of the radionuclide's consumption (that may be alienated when harvesting) is less than 0.01%, while the rate of Cs-137 radioactive decay is estimated as about 2% per year. Study was conducted with the support from the Russian Foundation for Basic Research (project no. 14-05-00903).

  19. The Effect of Freezing Stress on Percentage of Electrolytes Leakage and Survival of Flixweed (Descurainia sophia L. Seedlings

    Directory of Open Access Journals (Sweden)

    E Izadi-Darbandi

    2016-10-01

    Full Text Available Introduction Flixweed (Descurainia sophia L. is a medicinal plant from Brassicaceae family which also known as a weed for winter cereals and oil seed rape. Low temperatures are one of the most important abiotic stresses that threat Flixweed growth and productivity. Therefore it is important to recognize the freeze tolerance of Flixweed for successful planting and utilization in cold regions such as Mashhad in Khorasan Razavi Province (Iran’s north. east. Among many laboratory methods which have been developed to estimate and to evaluate plants response or their tolerance to freez¬ing temperatures, electrolyte leakage (EL test is widely used. This test is based on this principle that damage to the cell membranes results in enhanced leakage of solutes into the apoplastic water, hence recording the amount of leakage after stress treatments provides an estimation of tissue injury. Indeed continuing integration of plasma membrane is one important factor for survival of plants under freezing stress and any disturbance in membrane structure can lead to damage and death. So determination of LT50 point or critical temperature for electrolytes leakage and survival of plant is the most reliable, quantitative and simple methods for evaluating the cold tolerance of plants. The aim of this trial was to determine the LT50 according to the EL and SU% for Flixweed ecotypes. Materials and Methods In order to evaluate freeze tolerance in Flixweed, a factorial experiment based on completely randomized design with three replications was carried out in college of agriculture, Ferdowsi University of Mashhad. Experimental factors included five ecotypes of Flixweed (Eghlid, Sabzewar, Hamedan, Torbat-e-Jam and Neyshabour and 10 freezing temperature levels (0, -2,-4, -6, -8,-10,-12,-14,-16 and -18°C. Flixweed seeds were cultivated in pots in autumn of 2008 and were grown until 5-7 leaf stage under natural weather conditions for acclimation. Then to apply freezing

  20. 3种接种方法对十字花科黑腐病菌Xcc8004菌株在拟南芥Col-0上致病力的影响%Effect of 3 Inoculation Methods on the Virulence of Xanthomonas campestris pathovar campestris strain 8004 on Arabidopsis thaliana Col-0

    Institute of Scientific and Technical Information of China (English)

    梅雄; 李振江; 张慧; 唐纪良; 唐东阶

    2011-01-01

    Xanthomonas campestris pathovar campestris (Xcc) is the causal agent of black rot disease of cruciferous crops, and is a model strain for studying the molecular mechanisms of plant-microbe interactions. Xcc infects almost all the members of crucifer family (Brassicaceae) such as cabbage, radish and cauliflower, and the model plant Arabidopsis thaliana. Since the whole genome of Arabidopsis thaliana has been sequenced, which has became the best host plant for studying the molecular basis for the host defense against Xcc. However, the method for testing the pathogenicity of Xcc on A rabidopsis thaliana has not been well established so far. For this, in this study, the response ofthe wild type A rabidopsis thaliana ecoype Colombia 0 (Col-0) to the infection by Xcc strain 8004 (Xcc8004)was respectively tested by using leaf-infiltration, leaf-clipping and leaf main vein-piercing method. The results show that Xcc8004 can cause disease on the leaf of Arabidopsis thaliana Col-0 by leaf-infiltration, but not by leaf-clipping or leaf central vein-piercing. These results reveal that the pathogenicity of Xcc 8004 in Arabidopsis is strongly affected by the inoculation method used, and leaf-infiltration is a suitable method but leaf-clipping or leaf central vein-piercing is not a suitable method for which. In addition, a simple and efficient Arabidopsis thaliana planting method was established in this study.%十字花科黑腐病菌(Xanthomonas campestris pathovar campestris,Xcc)是引起十字花科植物黑腐病的病原菌,也是研究寄主与病原微生物相互作用分子机理的模式菌之一.Xcc可以感染白菜、萝卜和甘蓝等十字花科农作物,也可以感染重要的模式植物拟南芥(Arabidopsis thaliana).由于拟南芥的全基因组测序已经完成,因此,拟南芥是研究寄主植物对Xcc浸染的防卫反应的分子机理的最理想的寄主材料.但是,到现在为止,一套完善的在拟南芥上进行Xcc致病检测的实验系统还

  1. CHS基因起源初探及其在被子植物中的进化分析%A Preliminary Study on the Origin and Evolution of Chalcone Synthase (CHS) Gene in Angiosperms

    Institute of Scientific and Technical Information of China (English)

    黄金霞; 瞿礼嘉; 杨继; 银好; 顾红雅

    2004-01-01

    nudum (L.) Griseb. and Equisetum arvense L., as outgroups, the phylogenetic trees of about 250 CHSs from 29 families of angiosperm plants were constructed by using the neighbour-joining (NJ), maximum parsimony (MP) and quartet puzzle (QP)methods. The results showed that the CHSs from most plant families were separated into two or more clades while sequences from the families Brassicaceae, Fabaceae and Poaceae were each grouped into an independent monophyletic clade. The relative base substitution rates were estimated for CHS genes in three plant families, Solanaceae, Convolvulaceae, and Asteraceae, where the heterogeneity rate was detected both within and among the families. Results indicated that CHS genes in angiosperm plants were greatly diverse in terms of copy number, base substitution rate, and duplication/deletion events, which might be correlated with the diversity of life history, habitat, floral characters, and defense system of angiosperm plants.

  2. 产地与种源对玛咖化学质量的影响%Contribution of environmental and genetic variation to chemical similarity of Maca (Lepidium meyenii Walp.)

    Institute of Scientific and Technical Information of China (English)

    周文彬; 成哲弘; 赵云鹏; 傅承新

    2016-01-01

    Summary Maca,Lepidiummeyenii Walp.(Brassicaceae),has been domesticated as a medicinal crop at high altitude of the Peruvian Andes for two millennia.Its cultivars or landraces with different chemical profiles were bred and introduced out of Peru to various countries for industrial cultivation as driven by the increasing demand. Maca,which was approved on the ChinaInventory of NewResource Food in 2011,was also massively cultivated in multiple regions in China.The applied Maca cultivars differed among the producers,which may result in significant inconsistency of Maca quality.Thus,it is increasingly urgent to assess the quality of Maca roots with different cultivars and cultivation localities. We simultaneously conducted both common garden and translocation experiments to address the contribution of both genetic and environmental variation to chemical similarity of Maca.Contents of mineral elements,amino acids,total alkaloid,and macamides were determined on five replicate samples of each Maca category using inductively coupled plasma mass spectrometer (ICP-MS), L8900 amino acid analyzer, UV-2700 spectrophotometer and ProStar 210 high performance liquid chromatograph.Both the chemical component contents and overall similarity coefficients were calculated and compared for the four parameters above using analysis of variance(ANOVA),principal component analysis (PCA),hierarchical clustering analysis (HCA) and cosine coefficient.Data analyses were conducted using SPSS version 22.0. The results showed that the same cultivar from the translocation experiment (H6 ,A6) demonstrated remarkably greater chemical dissimilarity than the four cultivars (H1 ,H2 ,H3 ,H6) from the common garden experiment.The former experimental pair significantly differed in 1 1 components,while the latter four cultivars differed in five components.Although different groups of components differed to different extents between either cultivars or localities,the contents of mineral elements were

  3. Molecular mechanism of TFL1 on the regulation of flowering time in Rosaceae%TFL1调控蔷薇科植物开花时间的分子机制

    Institute of Scientific and Technical Information of China (English)

    高用顺; 汪以; 朱云美; 林顺权

    2016-01-01

    The rose family (Rosaceae),consists of numerous horticultural plants that have significant economic value.The family includes strawberry,raspberry and rose in the Rosoideae subfamily;fruit trees of apple,pear and loquat in the Maloideae subfamily;and peach,plum and apricot in the Prunoideae subfamily.Consisting of herbaceous plants and woody fruits,the rosaceous plants present various modes of flowering,and the different flowering modes directly influence the flowering ornamental period and/or the fruit harvest period,which are both very important in the horticulture industry.Flowering is the vital physiological process for fruiting,and it is the mark for the transitio n from vegetative to reproductive growth,which is also known as floral transition.In Arabidopsis,a genus in the Brassicaceae family,FLOWERINGLOCUS T (FT) is a key florigen,which integrates the signals regulated by the internal and external environmental cues,and it works at the shoot apical meristem (SAM) to activate the downstream signals for floral transition.TERMINAL FLOWER1 (TFL1) is a homologous gene of FT,which is originally reported in Arabidopsis,the function of TFL1 is opposite to FT,as it plays a role in delaying flowering time.TFL1 suppresses the expression of the downstream genes like LEAFY (LFY),flower meristem identity genes APETALA1 (AP1) and CAULIFLOWER (CAL),and thereby consequently inhibits flowering.The till mutant shows determinate inflorescence and early flowering phenotype.FT can bind with another flowering transcription factor FLOWERING LOCUS D (FD) and form a strong activator to promote the expression of downstream genes,however,when FD binds with TFL1,they form to become a powerful suppressor and inhibit flowering.In the process of vegetative growth,TFL1 strongly expresses in the central area of the inflorescence meristem,and suppresses the translation of AP1 and LFY,in order to keep the meristem at an undifferentiated status.In wild strawberry Fragaria vesca,FvTFL1 highly