WorldWideScience

Sample records for biophysconnector connecting sequence

  1. Detecting Emotions from Connected Action Sequences

    Science.gov (United States)

    Bernhardt, Daniel; Robinson, Peter

    In this paper we deal with the problem of detecting emotions from the body movements produced by naturally connected action sequences. Although action sequences are one of the most common forms of body motions in everyday scenarios their potential for emotion recognition has not been explored in the past. We show that there are fundamental differences between actions recorded in isolation and in natural sequences and demonstrate a number of techniques which allow us to correctly label action sequences with one of four emotions up to 86% of the time. Our results bring us an important step closer to recognizing emotions from body movements in natural scenarios.

  2. A Special Integer Sequence Strongly Connected to the Discrete Logarithm Problem

    Directory of Open Access Journals (Sweden)

    Omar Khadir

    2013-03-01

    Full Text Available Let p be a large prime integer. In this work, we study the recurrent sequence defined by ... and ... . This integer sequence has connection with the discrete logarithm problem, and under certain assumptions, we obtain an exact solution.

  3. A Special Integer Sequence Strongly Connected to the Discrete Logarithm Problem

    OpenAIRE

    Omar Khadir; Laszlo Szalay

    2013-01-01

    Let p be a large prime integer. In this work, we study the recurrent sequence defined by ... and ... . This integer sequence has connection with the discrete logarithm problem, and under certain assumptions, we obtain an exact solution.

  4. Neuronal substrate and effective connectivity of abnormal movement sequencing in schizophrenia.

    Science.gov (United States)

    Zemankova, Petra; Lungu, Ovidiu; Huttlova, Jitka; Kerkovsky, Milos; Zubor, Jozef; Lipova, Petra; Bares, Martin; Kasparek, Tomas

    2016-06-01

    Movement sequencing difficulties are part of the neurological soft signs (NSS), they have high clinical value because they are not always present in schizophrenia. We investigated the neuronal correlates of movement sequencing in 24 healthy controls and 24 schizophrenia patients, with (SZP SQ+) or without (SZP SQ-) sequencing difficulties. We characterized simultaneous and lagged functional connectivity between brain regions involved in movement sequencing using psychophysiological interaction (PPI) and the Granger causality modeling (GCM), respectively. Left premotor cortex (PMC) and superior parietal lobule (SPL) were specifically activated during sequential movements in all participants. Right PMC and precuneus, ipsilateral to the hand executing the task, activated during sequential movements only in healthy controls and SZP SQ-. SZP SQ+ showed hyperactivation in contralateral PMC, as compared to the other groups. PPI analysis revealed a deficit in inhibitory connections within this fronto-parietal network in SZP SQ+ during sequential task. GCM showed a significant lagged effective connectivity from right PMC to left SPL during task and rest periods in all groups and from right PMC to right precuneus in SZP SQ+ group only. Both SZP groups had a significant lagged connectivity from right to left PMC, during sequential task. Our results indicate that aberrant fronto-parietal network connectivity with cortical inhibition deficit and abnormal reliance on previous network activity are related to movement sequencing in SZP. The overactivation of motor cortex seems to be a good compensating strategy, the hyperactivation of parietal cortex is linked to motor deficit symptoms. PMID:26780603

  5. Determining exon connectivity in complex mRNAs by nanopore sequencing.

    Science.gov (United States)

    Bolisetty, Mohan T; Rajadinakaran, Gopinath; Graveley, Brenton R

    2015-01-01

    Short-read high-throughput RNA sequencing, though powerful, is limited in its ability to directly measure exon connectivity in mRNAs that contain multiple alternative exons located farther apart than the maximum read length. Here, we use the Oxford Nanopore MinION sequencer to identify 7,899 'full-length' isoforms expressed from four Drosophila genes, Dscam1, MRP, Mhc, and Rdl. These results demonstrate that nanopore sequencing can be used to deconvolute individual isoforms and that it has the potential to be a powerful method for comprehensive transcriptome characterization. PMID:26420219

  6. Cortico-cerebellar functional connectivity and sequencing of movements in schizophrenia

    Directory of Open Access Journals (Sweden)

    Kasparek Tomas

    2012-03-01

    Full Text Available Abstract Background Abnormal execution of several movements in a sequence is a frequent finding in schizophrenia. Successful performance of such motor acts requires correct integration of cortico-subcortical processes, particularly those related to cerebellar functions. Abnormal connectivity between cortical and cerebellar regions with resulting cognitive dysmetria has been proposed as the core dysfunction behind many signs and symptoms of schizophrenia. The aim of the present study was to assess if these proposed abnormalities in connectivity are a unifying feature of schizophrenia, or, rather, reflect a specific symptom domain of a heterogeneous disease. We predicted that abnormal functional connectivity between the motor cortex and cerebellum would be linked with abnormal performance of movement sequencing. Methods We examined 24 schizophrenia patients (SCH and 24 age-, sex-, and handedness-matched healthy controls (HC using fMRI during a modified finger-tapping task. The ability to perform movement sequencing was tested using the Neurological Evaluation Scale (NES. The subjects were categorized into two groups, with (SQ+ and without (SQ- movement sequencing abnormalities, according to the NES-SQ score. The effects of diagnosis and movement sequencing abnormalities on the functional connectivity parameters between the motor cortex and cerebellum (MC-CRBL and the supplementary motor cortex and cerebellum (SMA-CRBL activated during the motor task were analyzed. Results We found no effect of diagnosis on the functional connectivity measures. There was, however, a significant effect on the SQ group: SQ + patients showed a lower level of MC-CRBL connectivity than SQ- patients and healthy controls. Moreover, the level of MC-CRBL and SMA-CRBL negatively correlated with the magnitude of NES-SQ abnormalities, but with no other NES domain. Conclusions Abnormal cortico-cerebellar functional connectivity during the execution of a motor task is linked

  7. Negative sequence current control in wind power plants with VSC-HVDC connection

    DEFF Research Database (Denmark)

    Chaudhary, Sanjay; Teodorescu, Remus; Rodriguez, Pedro; Carne Kjaer, Philip; Gole, Ani M.

    2012-01-01

    Large offshore wind power plants may have multi-MW wind turbine generators (WTG) equipped with full-scale converters (FSC) and voltage source converter (VSC) based high voltaage direct-current (HVDC) transmission for grid connection. The power electronic converters in theWTG-FSC and the VSC......-HVDC allow fast current control in the offshore grid. This paper presents a method of controlling the negative sequence current injection into the offshore grid from the VSC-HVDC as well as WTG-FSCs. This would minimize the power oscillations and hence reduce the dc voltage overshoots in the VSC-HVDC system...... negative sequence current control mitigates the power oscillations and therefore limits the dc voltage excursions in the VSC-HVDC system during the asymmetric faults....

  8. Use of hourly sequences of global radiation for simulation of photovoltaic systems grid connected

    Energy Technology Data Exchange (ETDEWEB)

    Sidrach de Cardona, M. [Dept. Fisica Aplicada 2, E.T.S.I., Univ. de Malaga (Spain); Mora Lopez, Ll. [Dept. Lenguajes y Ciencias de la Computacion, E.T.S.I., Univ. de Malaga (Spain)

    1996-12-31

    In this paper we analyse whether it is suitable to use hourly sequences of global radiation to study the performance of photovoltaic systems grid connected. The purpose of this paper is to quantify the error which is made on predicting the energy which a photovoltaic system connected to the grid, when the global radiation interval considered (which is an input value in our computations) varies. Using a simulation model we have studied how much energy is produced. The input values we considered are: values of daily global radiation, values of hourly global radiation and global radiation intervals of 10 minutes. These data have been recorded by the metereological station in Malaga of Andalusian Institute for renewable energies. In each interval, the simulation model takes into account the variations in module temperature as a function of ambient temperature. Therefore, when using daily values the model takes into account the average value of ambient temperature during sun hours and when using other values the model takes into account the average of this parameter in the interval under consideration. The nominal power considered is 2 kWp. The model we use assumes that the working point of the installation is always the maximum power point of modules and that all produced energy is injected in the grid. We also study the influence on this error when different set point of minimum input power for inverter starting (threshold value) are used. (orig.)

  9. A Note on Stability of a Linear Functional Equation of Second Order Connected with the Fibonacci Numbers and Lucas Sequences

    Directory of Open Access Journals (Sweden)

    Janusz Brzdęk

    2010-01-01

    Full Text Available We prove the Hyers-Ulam stability of a second-order linear functional equation in single variable (with constant coefficients that is connected with the Fibonacci numbers and Lucas sequences. In this way we complement, extend, and/or improve some recently published results on stability of that equation.

  10. Next-generation sequencing approach for connecting secondary metabolites to biosynthetic gene clusters in fungi

    OpenAIRE

    Cacho, Ralph A.; Yi eTang; Yit-Heng eChooi

    2015-01-01

    Genomics has revolutionized the research on fungal secondary metabolite biosynthesis. To elucidate the molecular and enzymatic mechanisms underlying the biosynthesis of a specific secondary metabolite compound, the important first step is often to find the genes that responsible for its synthesis. The accessibility to fungal genome sequences allows the bypass of the cumbersome traditional library construction and screening approach. The advance in next-generation sequencing (NGS) technologies...

  11. Next-generation sequencing approach for connecting secondary metabolites to biosynthetic gene clusters in fungi

    OpenAIRE

    Cacho, Ralph A.; Tang, Yi; Chooi, Yit-Heng

    2015-01-01

    Genomics has revolutionized the research on fungal secondary metabolite (SM) biosynthesis. To elucidate the molecular and enzymatic mechanisms underlying the biosynthesis of a specific SM compound, the important first step is often to find the genes that responsible for its synthesis. The accessibility to fungal genome sequences allows the bypass of the cumbersome traditional library construction and screening approach. The advance in next-generation sequencing (NGS) technologies have further...

  12. Next-generation sequencing approach for connecting secondary metabolites to biosynthetic gene clusters in fungi

    Directory of Open Access Journals (Sweden)

    Ralph A Cacho

    2015-01-01

    Full Text Available Genomics has revolutionized the research on fungal secondary metabolite biosynthesis. To elucidate the molecular and enzymatic mechanisms underlying the biosynthesis of a specific secondary metabolite compound, the important first step is often to find the genes that responsible for its synthesis. The accessibility to fungal genome sequences allows the bypass of the cumbersome traditional library construction and screening approach. The advance in next-generation sequencing (NGS technologies have further improved the speed and reduced the cost of microbial genome sequencing in the past few years, which has accelerated the research in this field. Here, we will present an example work flow for identifying the gene cluster encoding the biosynthesis of secondary metabolites of interest using an NGS approach. We will also review the different strategies that can be employed to pinpoint the targeted gene clusters rapidly by giving several examples stemming from our work.

  13. Effects of Particle Size, Electronic Connectivity, and Incoherent Nanoscale Domains on the Sequence of Lithiation in LiFePO₄ Porous Electrodes.

    Science.gov (United States)

    Li, Yiyang; Meyer, Sophie; Lim, Jongwoo; Lee, Sang Chul; Gent, William E; Marchesini, Stefano; Krishnan, Harinarayan; Tyliszczak, Tolek; Shapiro, David; Kilcoyne, Arthur L David; Chueh, William C

    2015-11-01

    High-resolution X-ray microscopy is used to investigate the sequence of lithiation in LiFePO4 porous electrodes. For electrodes with homogeneous interparticle electronic connectivity via the carbon black network, the smaller particles lithiate first. For electrodes with heterogeneous connectivity, the better-connected particles preferentially lithiate. Correlative electron and X-ray microscopy also reveal the presence of incoherent nanodomains that lithiate as if they are separate particles. PMID:26423560

  14. INVESTIGATING CONNECTIONS BETWEEN SOME SMARANDACHE SEQUENCES, PRIME NUMBERS AND MAGIC SQUARES

    OpenAIRE

    CHEBRAKOV, Y.V.; SHMAGIN, V.V.

    2010-01-01

    In this paper we investigate some properties of Smarandache sequences of the 2nd kind and demonstrate that these numbers are near prime numbers. In particular, we establish that prime numbers and Smarandache numbers of the 2nd kind (a) may be computed from the similar analytical expressions, (b) may be used for constructing Magic squares 3x3 or Magic squares 9x9, consisted of 9 Magic squares 3x3.

  15. Local amino acid sequence patterns dominate the heterogeneous phenotype for the collagen connective tissue disease Osteogenesis Imperfecta resulting from Gly mutations.

    Science.gov (United States)

    Xiao, Jianxi; Yang, Zhangfu; Sun, Xiuxia; Addabbo, Rayna; Baum, Jean

    2015-10-01

    Osteogenesis Imperfecta (OI), a hereditary connective tissue disease in collagen that arises from a single Gly → X mutation in the collagen chain, varies widely in phenotype from perinatal lethal to mild. It is unclear why there is such a large variation in the severity of the disease considering the repeating (Gly-X-Y)n sequence and the uniform rod-like structure of collagen. We systematically evaluate the effect of local (Gly-X-Y)n sequence around the mutation site on OI phenotype using integrated bio-statistical approaches, including odds ratio analysis and decision tree modeling. We show that different Gly → X mutations have different local sequence patterns that are correlated with lethal and nonlethal phenotypes providing a mechanism for understanding the sensitivity of local context in defining lethal and non-lethal OI. A number of important trends about which factors are related to OI phenotypes are revealed by the bio-statistical analyses; most striking is the complementary relationship between the placement of Pro residues and small residues and their correlation to OI phenotype. When Pro is present or small flexible residues are absent nearby a mutation site, the OI case tends to be lethal; when Pro is present or small flexible residues are absent further away from the mutation site, the OI case tends to be nonlethal. The analysis also reveals the dominant role of local sequence around mutation sites in the Major Ligand Binding Regions that are primarily responsible for collagen binding to its receptors and shows that non-lethal mutations are highly predicted by local sequence considerations alone whereas lethal mutations are not as easily predicted and may be a result of more complex interactions. Understanding the sequence determinants of OI mutations will enhance genetic counseling and help establish which steps in the collagen hierarchy to target for drug therapy. PMID:25980613

  16. Connecting Local Environmental Sequences to Global Climate Patterns: Evidence From the Hominin-Bearing Hadar Formation, Ethiopia.

    Science.gov (United States)

    Campisano, C. J.; Feibel, C. S.

    2004-12-01

    Central to the debate surrounding global climate change and Plio-Pleistocene hominin evolution is the degree to which large-scale climate patterns influence low-latitude continental ecosystems and how these global influences can be distinguished from regional tectono-volcanic events and local environmental effects. These isolated factors must then be compared to trends or events in the hominin fossil or archaeological record. The Pliocene Hadar Formation preserves a high-resolution record of hominin paleoenvironments from roughly 3.5 to 2.3 Ma. The chronostratigraphic framework at Hadar, often divisible into sub-50,000 year intervals, provides temporal resolution relevant to evolutionary change within hominins and other taxa. Combined with a high sedimentation rate and abundant faunal remains, this tightly controlled stratigraphic framework allows Hadar to be compared to detailed climate proxies such as marine core isotope, dust, and sapropel records. Preliminary analyses from Hadar suggest that these comparisons can be used to distinguish local versus regional and global environmental change, determine the overall sensitivity of the Hadar system and its fauna to such change, and how this level of sensitively compares to other East African localities. Consistent cycling observed both between and within fluvial and lacustrine depositional environments prior to 2.9 Ma at Hadar appears to be dominantly climatic in nature. However, a significant change in depositional facies after 2.9 Ma to sequences dominated by conglomerate cut-and-fill cycles indicates a strong tectonic signature related to regional developments in the Main Ethiopian Rift (MER). While specific events seen in marine proxy records may have parallels in the Hadar environmental archive, their overall patterns of high versus low variability may be even more relevant. For example, periods of relatively high amplitude climate oscillations between 3.15 and 2.95 Ma may be linked to noted morphological

  17. Assessing hydraulic connections across a complex sequence of volcanic rocks-Analysis of U-20 WW multiple-well aquifer test, Pahute Mesa, Nevada National Security Site, Nevada

    Science.gov (United States)

    Garcia, C. Amanda; Fenelon, Joseph M.; Halford, Keith J.; Reiner, Steven R.; Laczniak, Randell J.

    2011-01-01

    Groundwater beneath Pahute Mesa flows through a complexly layered sequence of volcanic rock aquifers and confining units that have been faulted into distinct structural blocks. Hydraulic property estimates of rocks and structures in this flow system are necessary to assess radionuclide migration near underground nuclear testing areas. The U.S. Geological Survey (USGS) used a 12 month (October 1, 2008-October 1, 2009) intermittent pumping schedule of well U-20 WW and continuously monitored water levels in observation wells ER-20-6 #3, UE-20bh 1, and U-20bg as a multi-well aquifer test to evaluate hydraulic connections across structural blocks, bulk hydraulic properties of volcanic rocks, and the hydraulic significance of a major fault. Measured water levels were approximated using synthetic water levels generated from an analytical model. Synthetic water levels are a summation of environmental water-level fluctuations and a Theis (1935) transform of the pumping signal from flow rate to water-level change. Drawdown was estimated by summing residual differences between measured and synthetic water levels and the Theis-transformed pumping signal from April to September 2009. Drawdown estimates were used in a three-dimensional numerical model to estimate hydraulic properties of distinct aquifers, confining units, and a major fault. A maximum water-level drawdown of nearly 0.4 foot in well UE-20bh 1, which is more than 1 mile from the pumping well, was detected across a major fault. Drawdown estimates in the observation well nearest to (ER-20-6 #3, less than 1 mile) and within the same structural block as the pumping well were less than detection (-6 per foot, respectively, and transmissivity estimates range from 1,200 to 3,600 feet squared per day. Sensitivity analyses indicate that the major fault is hydraulically similar to the permeable host rock and connects flow between structural blocks.

  18. Assessing hydraulic connections across a complex sequence of volcanic rocks - Analysis of U-20 WW multiple-well aquifer test, Pahute Mesa, Nevada National Security Site, Nevada

    Science.gov (United States)

    Garcia, C. Amanda; Fenelon, Joseph M.; Halford, Keith J.; Reiner, Steven R.; Laczniak, Randell J.

    2011-01-01

    Groundwater beneath Pahute Mesa flows through a complexly layered sequence of volcanic rock aquifers and confining units that have been faulted into distinct structural blocks. Hydraulic property estimates of rocks and structures in this flow system are necessary to assess radionuclide migration near underground nuclear testing areas. The U.S. Geological Survey (USGS) used a 12 month (October 1, 2008— October 1, 2009) intermittent pumping schedule of well U-20 WW and continuously monitored water levels in observation wells ER-20-6 #3, UE-20bh 1, and U-20bg as a multi-well aquifer test to evaluate hydraulic connections across structural blocks, bulk hydraulic properties of volcanic rocks, and the hydraulic significance of a major fault. Measured water levels were approximated using synthetic water levels generated from an analytical model. Synthetic water levels are a summation of environmental water-level fluctuations and a Theis (1935) transform of the pumping signal from flow rate to water-level change. Drawdown was estimated by summing residual differences between measured and synthetic water levels and the Theis-transformed pumping signal from April to September 2009. Drawdown estimates were used in a three‑dimensional numerical model to estimate hydraulic properties of distinct aquifers, confining units, and a major fault.

  19. A Brief Analysis on sequence of clauses of Compound Sentences without Connective s in Russian%俄语无连接词复合句的分句间次序浅析

    Institute of Scientific and Technical Information of China (English)

    孔韶辉

    2005-01-01

    各分句间不用连接词或关联词,而用语调;标点符号等手段连接起来的复合句叫无连接词复合句.无连接词复合句具有意义含蓄,结构紧凑,用词简练,形式活泼等特点,是一个争议颇多,难以掌握的句法结构,这里着重论述无连接词复合句的分句次序.%Compound sentences which do not connect with each other between their clauses by intonation, punctuation mark and so on, are compound sentences without connectives. These compound sentences, characterized by meaningful implication, close structure, concise vocabulary, active form, etc. are a controversial and difficult syntactical structure. This paper focuses on the sequence of clauses of compound sentences without connectives.

  20. A symplectic Gysin sequence

    CERN Document Server

    Perutz, Timothy

    2008-01-01

    We use the theory of pseudo-holomorphic quilts to establish a counterpart, in symplectic Floer homology, to the Gysin sequence for the homology of a sphere-bundle. In a motivating class of examples, this "symplectic Gysin sequence" is precisely analogous to an exact sequence describing the behaviour of Seiberg-Witten monopole Floer homology for 3-manifolds under connected sum.

  1. Connected Traveler

    Energy Technology Data Exchange (ETDEWEB)

    Schroeder, Alex

    2015-11-01

    The Connected Traveler project is a multi-disciplinary undertaking that seeks to validate potential for transformative transportation system energy savings by incentivizing efficient traveler behavior. This poster outlines various aspects of the Connected Traveler project, including market opportunity, understanding traveler behavior and decision-making, automation and connectivity, and a projected timeline for Connected Traveler's key milestones.

  2. Sequence information signal processor

    Science.gov (United States)

    Peterson, John C.; Chow, Edward T.; Waterman, Michael S.; Hunkapillar, Timothy J.

    1999-01-01

    An electronic circuit is used to compare two sequences, such as genetic sequences, to determine which alignment of the sequences produces the greatest similarity. The circuit includes a linear array of series-connected processors, each of which stores a single element from one of the sequences and compares that element with each successive element in the other sequence. For each comparison, the processor generates a scoring parameter that indicates which segment ending at those two elements produces the greatest degree of similarity between the sequences. The processor uses the scoring parameter to generate a similar scoring parameter for a comparison between the stored element and the next successive element from the other sequence. The processor also delivers the scoring parameter to the next processor in the array for use in generating a similar scoring parameter for another pair of elements. The electronic circuit determines which processor and alignment of the sequences produce the scoring parameter with the highest value.

  3. About Connections

    Directory of Open Access Journals (Sweden)

    Kathleen S Rockland

    2015-05-01

    Full Text Available Despite the attention attracted by connectomics, one can lose sight of the very real questions concerning What are connections? In the neuroimaging community, structural connectivity is ground truth and underlying constraint on functional or effective connectivity. It is referenced to underlying anatomy; but, as increasingly remarked, there is a large gap between the wealth of human brain mapping and the relatively scant data on actual anatomical connectivity. Moreover, connections have typically been discussed as pairwise, point x projecting to point y (or: to points y and z, or more recently, in graph theoretical terms, as nodes or regions and the interconnecting edges. This is a convenient shorthand, but tends not to capture the richness and nuance of basic anatomical properties as identified in the classic tradition of tracer studies. The present short review accordingly revisits connectional weights, heterogeneity, reciprocity, topography, and hierarchical organization, drawing on concrete examples. The emphasis is on presynaptic long-distance connections, motivated by the intention to probe current assumptions and promote discussions about further progress and synthesis.

  4. HR Connect

    Data.gov (United States)

    US Agency for International Development — HR Connect is the USAID HR personnel system which allows HR professionals to process HR actions related to employee's personal and position information. This system...

  5. DISULFIND: A DISULFIDE BONDING STATE AND CYSTEINE CONNECTIVITY PREDICTION SERVER

    OpenAIRE

    Ceroni, A; Passerini, A.; Vullo,A; Frasconi, P.

    2006-01-01

    DISULFIND is a server for predicting the disulfide bonding state of cysteines and their disulfide connectivity starting from sequence alone. Optionally, disulfide connectivity can be predicted from sequence and a bonding state assignment given as input. The output is a simple visualization of the assigned bonding state (with confidence degrees) and the most likely connectivity patterns. The server is available at .

  6. Gendered Connections

    DEFF Research Database (Denmark)

    Jensen, Steffen Bo

    2009-01-01

    This article explores the gendered nature of urban politics in Cape Town by focusing on a group of female, township politicians. Employing the Deleuzian concept of `wild connectivity', it argues that these politically entrepreneurial women were able to negotiate a highly volatile urban landscape by...... space also drew on quite traditional notions of female respectability. Furthermore, the article argues, the form of wild connectivity to an extent was a function of the political transition, which destabilized formal structures of gendered authority. It remains a question whether this form of...

  7. Connected Traveler

    Energy Technology Data Exchange (ETDEWEB)

    2016-06-01

    The Connected Traveler framework seeks to boost the energy efficiency of personal travel and the overall transportation system by maximizing the accuracy of predicted traveler behavior in response to real-time feedback and incentives. It is anticipated that this approach will establish a feedback loop that 'learns' traveler preferences and customizes incentives to meet or exceed energy efficiency targets by empowering individual travelers with information needed to make energy-efficient choices and reducing the complexity required to validate transportation system energy savings. This handout provides an overview of NREL's Connected Traveler project, including graphics, milestones, and contact information.

  8. Pythagorean Triples from Harmonic Sequences.

    Science.gov (United States)

    DiDomenico, Angelo S.; Tanner, Randy J.

    2001-01-01

    Shows how all primitive Pythagorean triples can be generated from harmonic sequences. Use inductive and deductive reasoning to explore how Pythagorean triples are connected with another area of mathematics. (KHR)

  9. 78 FR 55684 - ConnectED Workshop

    Science.gov (United States)

    2013-09-11

    ... National Telecommunications and Information Administration ConnectED Workshop AGENCY: National... in the United States to next- generation broadband. This Notice announces that the ConnectED Workshop... ConnectED Workshop will discuss the growing bandwidth needs of K-12 schools as more schools use...

  10. Approaches to Sequence Similarity Representation

    OpenAIRE

    Sokolov, Artem; Rachkovskij, Dmitri

    2006-01-01

    We discuss several approaches to similarity preserving coding of symbol sequences and possible connections of their distributed versions to metric embeddings. Interpreting sequence representation methods with embeddings can help develop an approach to their analysis and may lead to discovering useful properties.

  11. Application of difference sequences theory

    OpenAIRE

    Khantarzhiev, Georgii

    2013-01-01

    The results of difference sequences theory are applied to analytic function theory and Diophantine equations. As a result we have the equation which connects the $n$-th derivative of a function with the difference sequence for the values of this function. Also the results of difference sequences theory helps to discover some features of the whole kind of Diophantine equations. The method presented allows to find limits where Diophantine equation does not have integer solutions. The higher pow...

  12. Discordant connections

    OpenAIRE

    Arora-Jonsson, Seema

    2009-01-01

    The importance of gender-equality and of women’s work in relation to the environment are considered to be crucial questions for development in ‘third world’ rural societies. ‘Development’ and a certain standard of welfare make these issues appear to be less urgent in a wealthier country like Sweden. In this paper I trace some of the contradictions and connections in the ways in which gender equality is conceptualised in women’s struggles vis á vis environmental issues in rural areas in Swede...

  13. Automatic sequences

    CERN Document Server

    Haeseler, Friedrich

    2003-01-01

    Automatic sequences are sequences which are produced by a finite automaton. Although they are not random they may look as being random. They are complicated, in the sense of not being not ultimately periodic, they may look rather complicated, in the sense that it may not be easy to name the rule by which the sequence is generated, however there exists a rule which generates the sequence. The concept automatic sequences has special applications in algebra, number theory, finite automata and formal languages, combinatorics on words. The text deals with different aspects of automatic sequences, in particular:· a general introduction to automatic sequences· the basic (combinatorial) properties of automatic sequences· the algebraic approach to automatic sequences· geometric objects related to automatic sequences.

  14. Sequence assembly

    DEFF Research Database (Denmark)

    Scheibye-Alsing, Karsten; Hoffmann, S.; Frankel, Annett Maria;

    2009-01-01

    Despite the rapidly increasing number of sequenced and re-sequenced genomes, many issues regarding the computational assembly of large-scale sequencing data have remain unresolved. Computational assembly is crucial in large genome projects as well for the evolving high-throughput technologies and...... plays an important role in processing the information generated by these methods. Here, we provide a comprehensive overview of the current publicly available sequence assembly programs. We describe the basic principles of computational assembly along with the main concerns, such as repetitive sequences...... in genomic DNA, highly expressed genes and alternative transcripts in EST sequences. We summarize existing comparisons of different assemblers and provide a detailed descriptions and directions for download of assembly programs at: http://genome.ku.dk/resources/assembly/methods.html....

  15. Genome Sequencing

    DEFF Research Database (Denmark)

    Sato, Shusei; Andersen, Stig Uggerhøj

    2014-01-01

    The current Lotus japonicus reference genome sequence is based on a hybrid assembly of Sanger TAC/BAC, Sanger shotgun and Illumina shotgun sequencing data generated from the Miyakojima-MG20 accession. It covers nearly all expressed L. japonicus genes and has been annotated mainly based on transcr......The current Lotus japonicus reference genome sequence is based on a hybrid assembly of Sanger TAC/BAC, Sanger shotgun and Illumina shotgun sequencing data generated from the Miyakojima-MG20 accession. It covers nearly all expressed L. japonicus genes and has been annotated mainly based...

  16. Sequence-structure relations of biopolymers

    CERN Document Server

    Barrett, Christopher; Reidys, Christian M

    2015-01-01

    Motivation: DNA data is transcribed into single-stranded RNA, which folds into specific molecular structures. In this paper we pose the question to what extent sequence- and structure-information correlate. We view this correlation as structural semantics of sequence data that allows for a different interpretation than conventional sequence alignment. Structural semantics could enable us to identify more general embedded "patterns" in DNA and RNA sequences. Results: We compute the partition function of sequences with respect to a fixed structure and connect this computation to the mutual information of a sequence-structure pair for RNA secondary structures. We present a Boltzmann sampler and obtain the a priori probability of specific sequence patterns. We present a detailed analysis for the three PDB-structures, 2JXV (hairpin), 2N3R (3-branch multi-loop) and 1EHZ (tRNA). We localize specific sequence patterns, contrast the energy spectrum of the Boltzmann sampled sequences versus those sequences that refold ...

  17. Minimum cost connection networks

    DEFF Research Database (Denmark)

    Hougaard, Jens Leth; Tvede, Mich

    In the present paper we consider the allocation of cost in connection networks. Agents have connection demands in form of pairs of locations they want to be connected. Connections between locations are costly to build. The problem is to allocate costs of networks satisfying all connection demands....... We use three axioms to characterize allocation rules that truthfully implement cost minimizing networks satisfying all connection demands in a game where: (1) a central planner announces an allocation rule and a cost estimation rule; (2) every agent reports her own connection demand as well as all...... connection costs; and, (3) the central planner selects a cost minimizing network satisfying reported connection demands based on estimated connection costs and allocates true connection costs of the selected network....

  18. Insertion sequences.

    OpenAIRE

    Mahillon, Jacques; Chandler, M.

    1998-01-01

    Insertion sequences (ISs) constitute an important component of most bacterial genomes. Over 500 individual ISs have been described in the literature to date, and many more are being discovered in the ongoing prokaryotic and eukaryotic genome-sequencing projects. The last 10 years have also seen some striking advances in our understanding of the transposition process itself. Not least of these has been the development of various in vitro transposition systems for both prokaryotic and eukaryoti...

  19. Assembly design system based on engineering connection

    Science.gov (United States)

    Yin, Wensheng

    2016-05-01

    An assembly design system is an important part of computer-aided design systems, which are important tools for realizing product concept design. The traditional assembly design system does not record the connection information of production on the engineering layer; consequently, the upstream design idea cannot be fully used in the downstream design. An assembly design model based on the relationship of engineering connection is presented. In this model, all nodes are divided into two categories: The component and the connection. Moreover, the product is constructed on the basis of the connection relationship of the components. The model is an And/Or graph and has the ability to record all assembly schemes. This model records only the connection information that has engineering application value in the product design. In addition, this model can significantly reduce the number of combinations, and is very favorable for the assembly sequence planning in the downstream. The system contains a connection knowledge system that can be mapped to the connection node, and the connection knowledge obtained in practice can be returned to the knowledge system. Finally, VC++ 6.0 is used to develop a prototype system called Connect-based Assembly Planning (CAP). The relationship between the CAP system and the commercial assembly design system is also established.

  20. Minimum cost connection networks

    DEFF Research Database (Denmark)

    Hougaard, Jens Leth; Tvede, Mich

    2015-01-01

    In the present paper we consider the allocation of costs in connection networks. Agents have connection demands in form of pairs of locations they want to have connected. Connections between locations are costly to build. The problem is to allocate costs of networks satisfying all connection...... demands. We use a few axioms to characterize allocation rules that truthfully implement cost minimizing networks satisfying all connection demands in a game where: (1) a central planner announces an allocation rule and a cost estimation rule; (2) every agent reports her own connection demand as well...... as all connection costs; (3) the central planner selects a cost minimizing network satisfying reported connection demands based on the estimated costs; and, (4) the planner allocates the true costs of the selected network. It turns out that an allocation rule satisfies the axioms if and only if relative...

  1. Main: Sequences [KOME

    Lifescience Database Archive (English)

    Full Text Available Sequences Nucleotide Sequence Nucleotide sequence of full length cDNA (trimmed sequence) kome_ine_full_seque...nce_db.fasta.zip kome_ine_full_sequence_db.zip kome_ine_full_sequence_db ...

  2. [Sequencing babies?].

    Science.gov (United States)

    Jordan, Bertrand

    2015-10-01

    An extension of newborn screening to genome sequencing is now feasible but raises a number of scientific, organisational and ethical issues. This is being explored in discussions and in several funded trials, in order to maximize benefits and avoid some identified risks. As some companies are already offering such a service, this is quite an urgent matter. PMID:26481033

  3. MedlinePlus Connect

    Science.gov (United States)

    ... IT systems, patient portals and electronic health record (EHR) systems to relevant, authoritative patient health information from ... they need it via their patient portal or EHR. How does MedlinePlus Connect work? MedlinePlus Connect responds ...

  4. Galois connections and applications

    CERN Document Server

    Erné, M; Wismath, S

    2004-01-01

    This book presents the main ideas of General Galois Theory as a generalization of Classical Galois Theory It sketches the development of Galois connections through the last three centuries Examples of Galois connections as powerful tools in Category Theory and Universal Algebra are given Applications of Galois connections in Linguistic and Data Analysis are presented

  5. Operational Sequencing

    DEFF Research Database (Denmark)

    Nielsen, Thomas Rosendal; Hustvedt, Kjersti

    2016-01-01

    Bakhtinian theory, Brian Edmiston developed a solution to this in the 1990s: the principle of ‘dialogic sequencing’. Aiming to escape the conflict between relativism and absolutism, we present an alternative to Edmiston’s approach, based on Niklas Luhmann’s theory of ‘operational closure’: operational...... sequencing. The principle is presented in the context of the previous debate between Edmiston and Joe Winston, and its application is demonstrated and assessed in our prototype process drama, Fertility Miracles....

  6. Asymptotically hyperbolic connections

    CERN Document Server

    Fine, Joel; Krasnov, Kirill; Scarinci, Carlos

    2015-01-01

    General Relativity in 4 dimensions can be equivalently described as a dynamical theory of SO(3)-connections rather than metrics. We introduce the notion of asymptotically hyperbolic connections, and work out an analog of the Fefferman-Graham expansion in the language of connections. As in the metric setup, one can solve the arising "evolution" equations order by order in the expansion in powers of the radial coordinate. The solution in the connection setting is arguably simpler, and very straightforward algebraic manipulations allow one to see how the obstruction appears at third order in the expansion. Another interesting feature of the connection formulation is that the "counter terms" required in the computation of the renormalised volume all combine into the Chern-Simons functional of the restriction of the connection to the boundary. As the Chern-Simons invariant is only defined modulo large gauge transformations, the requirement that the path integral over asymptotically hyperbolic connections is well-d...

  7. Asymptotic connectivity for the network of RNA secondary structures

    OpenAIRE

    Clote, Peter

    2015-01-01

    Given an RNA sequence a, consider the network G = (V;E), where the set V of nodes consists of all secondary structures of a, and whose edge set E consists of all edges connecting two secondary structures whose base pair distance is 1. De?ne the network connectivity, or expected network degree, as the average number of edges incident to vertices of G. Using algebraic combinatorial methods, we prove that the asymptotic connectivity of length n homopolymer sequences is 0:473418 ? n. This raises ...

  8. Handbook of networking & connectivity

    CERN Document Server

    McClain, Gary R

    1994-01-01

    Handbook of Networking & Connectivity focuses on connectivity standards in use, including hardware and software options. The book serves as a guide for solving specific problems that arise in designing and maintaining organizational networks.The selection first tackles open systems interconnection, guide to digital communications, and implementing TCP/IP in an SNA environment. Discussions focus on elimination of the SNA backbone, routing SNA over internets, connectionless versus connection-oriented networks, internet concepts, application program interfaces, basic principles of layering, proto

  9. Inverse Degree and Connectivity

    Institute of Scientific and Technical Information of China (English)

    MA Xiao-ling; TIAN Ying-zhi

    2013-01-01

    Let G be a connected graph with vertex set V(G),order n =丨V(G)丨,minimum degree δ(G) and connectivity κ(G).The graph G is called maximally connected if κ(G) =δ(G).Define the inverse degree of G with no isolated vertices as R(G) =Σv∈V(G)1/d(v),where d(v) denotes the degree of the vertex v.We show that G is maximally connected if R(G) < 1 + 2/δ + n-2δ+1/(n-1)(n-3).

  10. A cooperative approach to sequencing and connection problems

    NARCIS (Netherlands)

    Ciftci, B.B.

    2009-01-01

    There are many economic settings in which a group of agents wishes to undertake a joint enterprise in order to save costs. The success of such enterprises often relies on agreements on how to share the cost savings generated. The central issue of this monograph is to address cost allocation problems

  11. Connecting Arithmetic to Algebra

    Science.gov (United States)

    Darley, Joy W.; Leapard, Barbara B.

    2010-01-01

    Algebraic thinking is a top priority in mathematics classrooms today. Because elementary school teachers lay the groundwork to develop students' capacity to think algebraically, it is crucial for teachers to have a conceptual understanding of the connections between arithmetic and algebra and be confident in communicating these connections. Many…

  12. Handbook of Brain Connectivity

    CERN Document Server

    Jirsa, Viktor K

    2007-01-01

    Our contemporary understanding of brain function is deeply rooted in the ideas of the nonlinear dynamics of distributed networks. Cognition and motor coordination seem to arise from the interactions of local neuronal networks, which themselves are connected in large scales across the entire brain. The spatial architectures between various scales inevitably influence the dynamics of the brain and thereby its function. But how can we integrate brain connectivity amongst these structural and functional domains? Our Handbook provides an account of the current knowledge on the measurement, analysis and theory of the anatomical and functional connectivity of the brain. All contributors are leading experts in various fields concerning structural and functional brain connectivity. In the first part of the Handbook, the chapters focus on an introduction and discussion of the principles underlying connected neural systems. The second part introduces the currently available non-invasive technologies for measuring struct...

  13. Generalized connectivity of graphs

    CERN Document Server

    Li, Xueliang

    2016-01-01

    Noteworthy results, proof techniques, open problems and conjectures in generalized (edge-) connectivity are discussed in this book. Both theoretical and practical analyses for generalized (edge-) connectivity of graphs are provided. Topics covered in this book include: generalized (edge-) connectivity of graph classes, algorithms, computational complexity, sharp bounds, Nordhaus-Gaddum-type results, maximum generalized local connectivity, extremal problems, random graphs, multigraphs, relations with the Steiner tree packing problem and generalizations of connectivity. This book enables graduate students to understand and master a segment of graph theory and combinatorial optimization. Researchers in graph theory, combinatorics, combinatorial optimization, probability, computer science, discrete algorithms, complexity analysis, network design, and the information transferring models will find this book useful in their studies.

  14. Main: Sequences [KOME

    Lifescience Database Archive (English)

    Full Text Available Sequences Amino Acid Sequence Amino Acid sequence of full length cDNA (Longest ORF) kome_ine_full_sequence..._amino_db.fasta.zip kome_ine_full_sequence_amino_db.zip kome_ine_full_sequence_amino_db ...

  15. Sequence to Sequence Learning with Neural Networks

    OpenAIRE

    Sutskever, Ilya; Vinyals, Oriol; Le, Quoc V.

    2014-01-01

    Deep Neural Networks (DNNs) are powerful models that have achieved excellent performance on difficult learning tasks. Although DNNs work well whenever large labeled training sets are available, they cannot be used to map sequences to sequences. In this paper, we present a general end-to-end approach to sequence learning that makes minimal assumptions on the sequence structure. Our method uses a multilayered Long Short-Term Memory (LSTM) to map the input sequence to a vector of a fixed dimensi...

  16. From connected pathway flow to ganglion dynamics

    Science.gov (United States)

    Rücker, M.; Berg, S.; Armstrong, R. T.; Georgiadis, A.; Ott, H.; Schwing, A.; Neiteler, R.; Brussee, N.; Makurat, A.; Leu, L.; Wolf, M.; Khan, F.; Enzmann, F.; Kersten, M.

    2015-05-01

    During imbibition, initially connected oil is displaced until it is trapped as immobile clusters. While initial and final states have been well described before, here we image the dynamic transient process in a sandstone rock using fast synchrotron-based X-ray computed microtomography. Wetting film swelling and subsequent snap off, at unusually high saturation, decreases nonwetting phase connectivity, which leads to nonwetting phase fragmentation into mobile ganglia, i.e., ganglion dynamics regime. We find that in addition to pressure-driven connected pathway flow, mass transfer in the oil phase also occurs by a sequence of correlated breakup and coalescence processes. For example, meniscus oscillations caused by snap-off events trigger coalescence of adjacent clusters. The ganglion dynamics occurs at the length scale of oil clusters and thus represents an intermediate flow regime between pore and Darcy scale that is so far dismissed in most upscaling attempts.

  17. Covariant Magnetic Connection Hypersurfaces

    CERN Document Server

    Pegoraro, F

    2016-01-01

    In the single fluid, nonrelativistic, ideal-Magnetohydrodynamic (MHD) plasma description magnetic field lines play a fundamental role by defining dynamically preserved "magnetic connections" between plasma elements. Here we show how the concept of magnetic connection needs to be generalized in the case of a relativistic MHD description where we require covariance under arbitrary Lorentz transformations. This is performed by defining 2-D {\\it magnetic connection hypersurfaces} in the 4-D Minkowski space. This generalization accounts for the loss of simultaneity between spatially separated events in different frames and is expected to provide a powerful insight into the 4-D geometry of electromagnetic fields when ${\\bf E} \\cdot {\\bf B} = 0$.

  18. HIV-AIDS Connection

    Science.gov (United States)

    ... Content Marketing Share this: Main Content Area The HIV-AIDS Connection AIDS was first recognized in 1981 ... cancers. Why is there overwhelming scientific consensus that HIV causes AIDS? Before HIV infection became widespread in ...

  19. Can we measure connectivity?

    Science.gov (United States)

    Brazier, Richard; Vericat, Damia; Cerda, Artemi; Brardinoni, Francesco; Batalla, Ramon; Masselink, Rens; Wittenberg, Lea; Nadal Romero, Estela; López-Tarazón, José; Estrany, Joan; Keesstra, Saskia

    2015-04-01

    Whilst the term 'connectivity' in hydrological and sediment-based research is becoming increasing well-known, it is neither used consistently in the existing literature, nor is it clear from that literature, that the connectivity of a landscape, or part of a landscape can be measured. However, it is argued that understanding how well critical source areas of water or sediment are connected to receiving surface waters, may be an essential step towards improvement of land management to mitigate flooding, soil erosion and water quality problems. The first part of this paper, therefore, explores what is currently meant by the term connectivity; addressing the differences between structural and functional, or process-based connectivity, specifically with reference to the movement of water and sediment through an ecosystem. We argue that most existing studies do not measure connectivity. Instead, they address only part of the story. Existing work may describe structural change in a landscape, which can perhaps elucidate the potential for connectivity to occur, or indeed the emergent spatial properties of an ecosystem, but it rarely quantifies the connectivity of an ecosystem in a process-based manner through time. Alternatively, a great deal of work describes fluxes of water and sediment at (sometimes multiple) points in a landscape and infers connectivity of the system via analysis of time series data; from rainfall peak to hydrograph peak or start of sediment flux until peak sediment flux within an event. Such data are doubtless useful to understand catchment function, but alone, they do not provide evidence that quantifies (for example) how well connected sediment sources are to the outlets of the catchments from which they flux. Finally, there are many examples of water and particularly sediment tracing studies, which attempt to link, either directly or indirectly water or sediment sources with their sinks (which might more usefully be termed temporary stores

  20. Green Connections Network

    Data.gov (United States)

    City of San Francisco — Green Connections aims to increase access to parks, open spaces, and the waterfront by envisioning a network of ���green connectors�۪ ��� city streets that will be...

  1. Series connection of IGBT

    OpenAIRE

    Nguyen, The Van; Jeannin, Pierre-Olivier; Vagnon, Eric; Frey, David; Crébier, Jean-Christophe

    2010-01-01

    International audience This article analyzes the effects of parasitic capacitances in the series connection of IGBT, which exist naturally due to gate driver and power circuit geometry. Two solutions, that can be combined, are proposed to minimize these effects in order to achieve a better voltage balancing. The first one is based on gate driver self-powering technique. The second one is based on a vertical structure assembly of IGBT connected in series. The performance offered by these tw...

  2. Quick connect fastener

    Science.gov (United States)

    Weddendorf, Bruce (Inventor)

    1994-01-01

    A quick connect fastener and method of use is presented wherein the quick connect fastener is suitable for replacing available bolts and screws, the quick connect fastener being capable of installation by simply pushing a threaded portion of the connector into a member receptacle hole, the inventive apparatus being comprised of an externally threaded fastener having a threaded portion slidably mounted upon a stud or bolt shaft, wherein the externally threaded fastener portion is expandable by a preloaded spring member. The fastener, upon contact with the member receptacle hole, has the capacity of presenting cylindrical threads of a reduced diameter for insertion purposes and once inserted into the receiving threads of the receptacle member hole, are expandable for engagement of the receptacle hole threads forming a quick connect of the fastener and the member to be fastened, the quick connect fastener can be further secured by rotation after insertion, even to the point of locking engagement, the quick connect fastener being disengagable only by reverse rotation of the mated thread engagement.

  3. Strengthening connections: functional connectivity and brain plasticity

    OpenAIRE

    Kelly, Clare; Castellanos, F. Xavier

    2014-01-01

    The ascendancy of functional neuroimaging has facilitated the addition of network-based approaches to the neuropsychologist’s toolbox for evaluating the sequelae of brain insult. In particular, intrinsic functional connectivity (iFC) mapping of resting state fMRI (R-fMRI) data constitutes an ideal approach to measuring macro-scale networks in the human brain. Beyond the value of iFC mapping for charting how the functional topography of the brain is altered by insult and injury, iFC analyses c...

  4. Connecting walks and connecting dart sequences for n-D combinatorial pyramids

    OpenAIRE

    Fourey, Sébastien; Brun, Luc

    2009-01-01

    Combinatorial maps define a general framework which allows to encode any subdivision of an n-D orientable quasi-manifold with or without boundaries. Combinatorial pyramids are defined as stacks of successively reduced combinatorial maps. Such pyramids provide a rich framework which allows to encode fine properties of objects (either shapes or partitions). Combinatorial pyramids have first been defined in 2D. This first work has later been extended to pyramids of n-D generalized combinatorial ...

  5. Algebraic connectivity and graph robustness.

    Energy Technology Data Exchange (ETDEWEB)

    Feddema, John Todd; Byrne, Raymond Harry; Abdallah, Chaouki T. (University of New Mexico)

    2009-07-01

    Recent papers have used Fiedler's definition of algebraic connectivity to show that network robustness, as measured by node-connectivity and edge-connectivity, can be increased by increasing the algebraic connectivity of the network. By the definition of algebraic connectivity, the second smallest eigenvalue of the graph Laplacian is a lower bound on the node-connectivity. In this paper we show that for circular random lattice graphs and mesh graphs algebraic connectivity is a conservative lower bound, and that increases in algebraic connectivity actually correspond to a decrease in node-connectivity. This means that the networks are actually less robust with respect to node-connectivity as the algebraic connectivity increases. However, an increase in algebraic connectivity seems to correlate well with a decrease in the characteristic path length of these networks - which would result in quicker communication through the network. Applications of these results are then discussed for perimeter security.

  6. Classifying Genomic Sequences by Sequence Feature Analysis

    Institute of Scientific and Technical Information of China (English)

    Zhi-Hua Liu; Dian Jiao; Xiao Sun

    2005-01-01

    Traditional sequence analysis depends on sequence alignment. In this study, we analyzed various functional regions of the human genome based on sequence features, including word frequency, dinucleotide relative abundance, and base-base correlation. We analyzed the human chromosome 22 and classified the upstream,exon, intron, downstream, and intergenic regions by principal component analysis and discriminant analysis of these features. The results show that we could classify the functional regions of genome based on sequence feature and discriminant analysis.

  7. Multi-task Sequence to Sequence Learning

    OpenAIRE

    Luong, Minh-Thang; Le, Quoc V.; Sutskever, Ilya; Vinyals, Oriol; Kaiser, Lukasz

    2015-01-01

    Sequence to sequence learning has recently emerged as a new paradigm in supervised learning. To date, most of its applications focused on only one task and not much work explored this framework for multiple tasks. This paper examines three multi-task learning (MTL) settings for sequence to sequence models: (a) the oneto-many setting - where the encoder is shared between several tasks such as machine translation and syntactic parsing, (b) the many-to-one setting - useful when only the decoder ...

  8. Shotgun protein sequencing.

    Energy Technology Data Exchange (ETDEWEB)

    Faulon, Jean-Loup Michel; Heffelfinger, Grant S.

    2009-06-01

    A novel experimental and computational technique based on multiple enzymatic digestion of a protein or protein mixture that reconstructs protein sequences from sequences of overlapping peptides is described in this SAND report. This approach, analogous to shotgun sequencing of DNA, is to be used to sequence alternative spliced proteins, to identify post-translational modifications, and to sequence genetically engineered proteins.

  9. VANET Connectivity Analysis

    CERN Document Server

    Kafsi, M; Dousse, O; Alpcan, T; Hubaux, J -P

    2009-01-01

    Vehicular Ad Hoc Networks (VANETs) are a peculiar subclass of mobile ad hoc networks that raise a number of technical challenges, notably from the point of view of their mobility models. In this paper, we provide a thorough analysis of the connectivity of such networks by leveraging on well-known results of percolation theory. By means of simulations, we study the influence of a number of parameters, including vehicle density, proportion of equipped vehicles, and radio communication range. We also study the influence of traffic lights and roadside units. Our results provide insights on the behavior of connectivity. We believe this paper to be a valuable framework to assess the feasibility and performance of future applications relying on vehicular connectivity in urban scenarios.

  10. Connectivity and superconductivity

    CERN Document Server

    Rubinstein, Jacob

    2000-01-01

    The motto of connectivity and superconductivity is that the solutions of the Ginzburg--Landau equations are qualitatively influenced by the topology of the boundaries, as in multiply-connected samples. Special attention is paid to the "zero set", the set of the positions (also known as "quantum vortices") where the order parameter vanishes. The effects considered here usually become important in the regime where the coherence length is of the order of the dimensions of the sample. It takes the intuition of physicists and the awareness of mathematicians to find these new effects. In connectivity and superconductivity, theoretical and experimental physicists are brought together with pure and applied mathematicians to review these surprising results. This volume is intended to serve as a reference book for graduate students and researchers in physics or mathematics interested in superconductivity, or in the Schrödinger equation as a limiting case of the Ginzburg--Landau equations.

  11. Whole Genome Sequencing

    Science.gov (United States)

    ... you want to learn. Search form Search Whole Genome Sequencing You are here Home Testing & Services Testing ... the full story, click here . What is whole genome sequencing? Whole genome sequencing is the mapping out ...

  12. Sequence Read Archive (SRA)

    Data.gov (United States)

    U.S. Department of Health & Human Services — The Sequence Read Archive (SRA) stores raw sequencing data from the next generation of sequencing platforms including Roche 454 GS System®, Illumina Genome...

  13. Quantum group connections

    OpenAIRE

    Lewandowski, Jerzy; Okolow, Andrzej

    2008-01-01

    The Ahtekar-Isham C*-algebra known from Loop Quantum Gravity is the algebra of continuous functions on the space of (generalized) connections with a compact structure Lie group. The algebra can be constructed by some inductive techniques from the C*-algebra of continuous functions on the group and a family of graphs embedded in the manifold underlying the connections. We generalize the latter construction replacing the commutative C*-algebra of continuous functions on the group by a non-commu...

  14. A super soliton connection

    International Nuclear Information System (INIS)

    Integrable super non-linear classical partial differential equations are considered. A super s1(2,R) algebra valued connection 1-form is constructed. It is shown that curvature 2-form of this super connection vanishes by virtue of the integrable super equations of motion. A super extension of the AKNS scheme is presented and a class of super extension of the Lax hierarchy and super non-linear Schroedinger equation are found. O(N) extension and the Baecklund transformations of the above super equations are also considered. (author)

  15. Science sequence design

    Science.gov (United States)

    Koskela, P. E.; Bollman, W. E.; Freeman, J. E.; Helton, M. R.; Reichert, R. J.; Travers, E. S.; Zawacki, S. J.

    1973-01-01

    The activities of the following members of the Navigation Team are recorded: the Science Sequence Design Group, responsible for preparing the final science sequence designs; the Advanced Sequence Planning Group, responsible for sequence planning; and the Science Recommendation Team (SRT) representatives, responsible for conducting the necessary sequence design interfaces with the teams during the mission. The interface task included science support in both advance planning and daily operations. Science sequences designed during the mission are also discussed.

  16. Consensus Sequence Zen

    OpenAIRE

    Schneider, Thomas D.

    2002-01-01

    Consensus sequences are widely used in molecular biology but they have many flaws. As a result, binding sites of proteins and other molecules are missed during studies of genetic sequences and important biological effects cannot be seen. Information theory provides a mathematically robust way to avoid consensus sequences. Instead of using consensus sequences, sequence conservation can be quantitatively presented in bits of information by using sequence logo graphics to repre...

  17. Moduli Space of General Connections

    CERN Document Server

    Dubrovskiy, Stanislav

    2010-01-01

    We consider local invariants of general connections (with torsion). The group of origin-preserving diffeomorphisms acts on a space of jets of general connections. Dimensions of moduli spaces of generic connections are calculated. Poincar\\'e series of the geometric structure of connection is constructed, and shown to be a rational function, confirming the finiteness assertion of Tresse.

  18. Covert connection of filaments

    CERN Document Server

    Filippov, Boris

    2015-01-01

    We analyse the relationship between two near filaments, which do not show any connection in H-alpha images but reveal close magnetic connectivity during filament activations in Extreme Ultraviolet (EUV) observations. A twisted flux rope, which connects a half of one filament with another filament, becomes visible during several activations but seems to exist all the time of the filaments presence on the disc. Solar Dynamic Observatory} (SDO) and Solar Terrestrial Relations Observatory (STEREO) observed the region with the filaments from two points of view separated by the angle of about 120 deg. On 2012 July 27, SDO observed the filament activation on disc, while for the STEREO B position the filaments were visible at the limb. Nearly identical interaction episode was observed on 2012 August 04 by STEREO A on disc and by SDO at the limb. This good opportunity allows us to disentangle the 3-D shape of the connecting flux rope and in particular to determine with high reliability the helicity sign of the flux ro...

  19. Connectivity measures: a review

    Czech Academy of Sciences Publication Activity Database

    Kindlmann, Pavel; Burel, F.

    2008-01-01

    Roč. 23, č. 1 (2008), s. 879-890. ISSN 0921-2973 R&D Projects: GA MŠk LC06073; GA AV ČR(CZ) IAA6087301 Institutional research plan: CEZ:AV0Z60870520 Keywords : Conservation biology * Habitat fragmentation * Landscape connectivity * Measures * Species extinction Subject RIV: EH - Ecology, Behaviour Impact factor: 2.453, year: 2008

  20. Connecting to Compete 2016

    OpenAIRE

    Arvis, Jean-François; Saslavsky, Daniel; Ojala, Lauri; Shepherd, Ben; Busch, Christina; Raj, Anasuya; Naula, Tapio

    2016-01-01

    The LPI has provided valuable information for policy makers, traders, and other stakeholders, including researchers and academics, on the role of logistics for growth and the policies needed to support logistics in areas such as infrastructure planning, service provision, and crossborder trade and transport facilitation. The results of Connecting to Compete 2016 point to Germany as the bes...

  1. Connections that Count

    Science.gov (United States)

    Lloyd-Zannini, Lou

    2012-01-01

    What can parents and educators of gifted children do to help them build the connections that will allow them to thrive? In this article, the author suggests a few practical and simple things that parents and educators of gifted children might want to consider as they live and work with them day by day. He breaks those suggestions out into two…

  2. Clip, Connect, Clone

    DEFF Research Database (Denmark)

    Fujima, Jun; Lunzer, Aran; Hornbæk, Kasper Anders Søren;

    2010-01-01

    using three mechanisms: clipping of input and result elements from existing applications to form cells on a spreadsheet; connecting these cells using formulas, thus enabling result transfer between applications; and cloning cells so that multiple requests can be handled side by side. We demonstrate a...

  3. High Quality Connections

    OpenAIRE

    Balslev, Lise; Molin, Jan

    2014-01-01

    Gode og stærke relationer er afgørende for en organisations livskraft. Motivation, engagement, effektivitet, kreativitet mv. er nemlig ofte direkte forbundet med organisationens evne til at skabe stærke relationer mellem ledere, medarbejdere, kunder og omverden. Jane Dutton, Professor of Business Administration and Psychology ved Michigan University, introducerer begrebet High Quality Connections (HQC) og siger.

  4. The CONNECT project

    DEFF Research Database (Denmark)

    Assaf, Yaniv; Alexander, Daniel C; Jones, Derek K;

    2013-01-01

    tractography to infer connectivity between brain regions. In parallel to the development of tractography, additional diffusion MRI based frameworks (CHARMED, AxCaliber, ActiveAx) were developed enabling the extraction of a multitude of micro-structural parameters (axon diameter distribution, mean axonal...

  5. From connection to customer

    International Nuclear Information System (INIS)

    Energy companies can no longer be certain that a customer today will remain a customer tomorrow. They have to work hard to achieve that. They are going from thinking in terms of connections to pampering their customers. Good Customer Relationship Management is a way to achieve a competitive advantage. The whole organisation has to adapt, particularly the customer orientation of employees

  6. Electronic Transport and Thermopower in Aperiodic DNA Sequences

    Science.gov (United States)

    Roche, Stephan; Maciá, Enrique

    A detailed study of charge transport properties of synthetic and genomic DNA sequences is reported. Genomic sequences of the Chromosome 22, λ-bacteriophage, and D1s80 genes of Human and Pygmy chimpanzee are considered in this work, and compared with both periodic and quasiperiodic (Fibonacci) sequences of nucleotides. Charge transfer efficiency is compared for all these different sequences, and large variations in charge transfer efficiency, stemming from sequence-dependent effects, are reported. In addition, basic characteristics of tunneling currents, including contact effects, are described. Finally, the thermoelectric power of nucleobases connected in between metallic contacts at different temperatures is presented.

  7. An improved molecular connectivity index

    Institute of Scientific and Technical Information of China (English)

    李新华; 俞庆森; 朱龙观

    2000-01-01

    Through modification of the delta values of the molecular connectivity indexes, and connecting the quantum chemistry with topology method effectively, the molecular connectivity indexes are converted into quantum-topology indexes. The modified indexes not only keep all information obtained from the original molecular connectivity method but also have their own virtue in application, and at the same time make up some disadvantages of the quantum and molecular connectivity methods.

  8. Connectivity of neutral networks and structural conservation in protein evolution

    OpenAIRE

    Bastolla, Ugo; Porto, Markus; Roman, H. Eduardo; Vendruscolo, Michele

    2001-01-01

    Protein structures are much more conserved than sequences during evolution. Based on this observation, we investigate the consequences of structural conservation on protein evolution. We study seven of the most studied protein folds, finding out that an extended neutral network in sequence space is associated to each of them. Within our model, neutral evolution leads to a non-Poissonian substitution process, due to the broad distribution of connectivities in neutral networks. The observation ...

  9. Complex Factorizations of the Lucas Sequences via Matrix Methods

    Directory of Open Access Journals (Sweden)

    Honglin Wu

    2014-01-01

    Full Text Available Firstly, we show a connection between the first Lucas sequence and the determinants of some tridiagonal matrices. Secondly, we derive the complex factorizations of the first Lucas sequence by computing those determinants with the help of Chebyshev polynomials of the second kind. Furthermore, we also obtain the complex factorizations of the second Lucas sequence by the similar matrix method using Chebyshev polynomials of the first kind.

  10. The generalized quaternion sequence

    Science.gov (United States)

    Deveci, Ömür

    2016-04-01

    In this work, we define the recurrence sequence by using the relation matrix of the generalized quaternion group and then, we obtain miscellaneous properties of this sequence. Also, we obtain the cyclic groups and the semigroups which are produced by generating matrix of the sequence defined when read modulo m. Furthermore, we study this sequence modulo m, and then we derive the relationship among the order the cyclic groups obtained and the periods of the sequence defined.

  11. Connecting to Everyday Practices

    DEFF Research Database (Denmark)

    Iversen, Ole Sejer; Smith, Rachel Charlotte

    We suggest that social media can contribute to reconnecting audiences’ everyday practices to issues of cultural heritage in museum institutions. Social media can support the creation of dialogical spaces in the museum, both playful and reflective, that allow audiences to engage in the ongoing...... construction and reproduction of cultural heritage creating novel connections between self and others and between past, present and future. We present experiences from a current research project, the Digital Natives exhibition, in which social media was designed as an integral part of the exhibition to connect...... issues of digital heritage with audiences’ everyday practices in a museum. We point to the fact the use of social media in museums not only challenge us to rethink the design of technology for museum experiences. Social media also challenge us to rethink conceptions of museums and cultural heritage...

  12. The Will to Connection

    DEFF Research Database (Denmark)

    Jensen, Ole B.

    ). Crucially, ‘visibly impressing the path into the surface of the earth’ is no longer sufficient evidence of connections and interactions since networked technologies create connections by ‘invisible’ linkages across time and space suggesting the we need to add ‘digital connectivity’ to ‘physical proximity...... in particular. Here the paper engages with notions of ‘NetLocality’ (Gordon & Silva 2011), ‘CodeSpace’ (Kitchin & Dodge 2011), ‘Digital Ground’ (McCullough 2004), ‘Splintering Urbanism’ (Graham & Marvin 2001) and the ‘Sentient City’ (Shephard 2011) in order to qualify the networked technology dimension......This paper put forward the argument that mobilities research need to pay increased attention to the way network technologies and location aware media are influencing the movement in everyday life. The title of the paper is from a quote of Georg Simmel who more than a century ago argued...

  13. Network of tRNA Gene Sequences

    Institute of Scientific and Technical Information of China (English)

    WEI Fang-ping; LI Sheng; MA Hong-ru

    2008-01-01

    A network of 3719 tRNA gene sequences was constructed using simplest alignment. Its topology, degree distribution and clustering coefficient were studied. The behaviors of the network shift from fluctuated distribution to scale-free distribution when the similarity degree of the tRNA gene sequences increases. The tRNA gene sequences with the same anticodon identity are more self-organized than those with different anticodon identities and form local clusters in the network. Some vertices of the local cluster have a high connection with other local clusters, and the probable reason was given. Moreover, a network constructed by the same number of random tRNA sequences was used to make comparisons. The relationships between the properties of the tRNA similarity network and the characters of tRNA evolutionary history were discussed.

  14. Evaluation of 604 Connect

    OpenAIRE

    Ladner, S.; Ihnat, M.

    2000-01-01

    The Vancouver Community Network (VCN) is a not-for-profit Internet Service Provider (ISP), based on the “freenet” model of public Internet access. As a VolNet delivery agency, VCN committed to providing participating organizations with the following: (1) A communications protocol, (2) Internet Access, (3) Computer Equipment, (4) Training, and (5) Technical Support. In April 1999, VCN began receiving applications from non-profit organizations for its 604 Connect program, so named for the 604 t...

  15. Empowering Human Connected Communities

    OpenAIRE

    Cerri, Stefano A.

    2012-01-01

    International audience The keynote's goal is to reflect on emergent opportunities for human Discovery (in science), Creativity (in art & industry), and Learning (in education) as processes often occurring serendipitously in individuals and in communities empowered by dynamic Web connections in the global village. These reflections seem to fit best with the mandate of the CBIE Conference: sustainable education. Having been influenced by the pioneering work of the late ecologist Francesco Di...

  16. Financing ASEAN Connectivity

    OpenAIRE

    Fauziah ZEN; Regan, Michael

    2013-01-01

    This report gives deeper insights on how the infrastructure development is being funded in different ASEAN Member States (AMSs) for ASEAN Connectivity. In this regards, the Public-Private Partnership (PPP) Program is also seen as one way to help build the infrastructure in ASEAN. The AMSs are having different levels of infrastructure policy, financing method and financial capacity. The PPP Program has been significantly developed and utilized in Malaysia, Indonesia, Thailand and the Philippin...

  17. Mobile connections : curator's statement.

    OpenAIRE

    Hemment, Drew

    2004-01-01

    The Mobile Connections exhibition at the Futuresonic 2004 festival explored how mobile and locative media reconfigure social, cultural and information space. It looked beyond computing in its current form, towards the social and cultural possibilities opened by a new generation of networked, location-aware media. It sought an art of mobile communications: asking, are there any forms of expression that are intrinsic or unique to mobile and locative media?

  18. Finding significantly connected voxels based on histograms of connection strengths

    DEFF Research Database (Denmark)

    Kasenburg, Niklas; Pedersen, Morten; Darkner, Sune

    2016-01-01

    We explore a new approach for structural connectivity based segmentations of subcortical brain regions. Connectivity based segmentations are usually based on fibre connections from a seed region to predefined target regions. We present a method for finding significantly connected voxels based on...... the distribution of connection strengths. Paths from seed voxels to all voxels in a target region are obtained from a shortest-path tractography. For each seed voxel we approximate the distribution with a histogram of path scores. We hypothesise that the majority of estimated connections are false-positives...... and that their connection strength is distributed differently from true-positive connections. Therefore, an empirical null-distribution is defined for each target region as the average normalized histogram over all voxels in the seed region. Single histograms are then tested against the corresponding...

  19. Energy storage connection system

    Science.gov (United States)

    Benedict, Eric L.; Borland, Nicholas P.; Dale, Magdelena; Freeman, Belvin; Kite, Kim A.; Petter, Jeffrey K.; Taylor, Brendan F.

    2012-07-03

    A power system for connecting a variable voltage power source, such as a power controller, with a plurality of energy storage devices, at least two of which have a different initial voltage than the output voltage of the variable voltage power source. The power system includes a controller that increases the output voltage of the variable voltage power source. When such output voltage is substantially equal to the initial voltage of a first one of the energy storage devices, the controller sends a signal that causes a switch to connect the variable voltage power source with the first one of the energy storage devices. The controller then causes the output voltage of the variable voltage power source to continue increasing. When the output voltage is substantially equal to the initial voltage of a second one of the energy storage devices, the controller sends a signal that causes a switch to connect the variable voltage power source with the second one of the energy storage devices.

  20. Cutter Connectivity Bandwidth Study

    Science.gov (United States)

    2002-10-01

    The goal of this study was to determine how much bandwidth is required for cutters to meet emerging data transfer requirements. The Cutter Connectivity Business Solutions Team with guidance front the Commandant's 5 Innovation Council sponsored this study. Today, many Coast Guard administrative and business functions are being conducted via electronic means. Although our larger cutters can establish part-time connectivity using commercial satellite communications (SATCOM) while underway, there are numerous complaints regarding poor application performance. Additionally, smaller cutters do not have any standard means of underway connectivity. The R&D study shows the most important factor affecting web performance and enterprise applications onboard cutters was latency. Latency describes the time it takes the signal to reach the satellite and come back down through space. The latency due to use of higher orbit satellites is causing poor application performance and inefficient use of expensive SATCOM links. To improve performance, the CC must, (1) reduce latency by using alternate communications links such as low-earth orbit satellites, (2) tailor applications to the SATCOM link and/or (3) optimize protocols used for data communication to minimize time required by present applications to establish communications between the user and the host systems.

  1. Polynomially Bounded Sequences and Polynomial Sequences

    Directory of Open Access Journals (Sweden)

    Okazaki Hiroyuki

    2015-09-01

    Full Text Available In this article, we formalize polynomially bounded sequences that plays an important role in computational complexity theory. Class P is a fundamental computational complexity class that contains all polynomial-time decision problems [11], [12]. It takes polynomially bounded amount of computation time to solve polynomial-time decision problems by the deterministic Turing machine. Moreover we formalize polynomial sequences [5].

  2. Aromatic oligoamides with a rare ortho-connectivity

    DEFF Research Database (Denmark)

    Hjelmgaard, T.; Nielsen, John

    2013-01-01

    Even though aromatic oligoamides composed of aromatic amino acids in a "one-way sequence" attract ever increasing research interest, backbones connected through ortho-linked aromatics remain rare. Herein, we present the first synthesis and study of N-alkylated ortho-aminomethyl- benzamides termed...

  3. Genome Sequence Databases (Overview): Sequencing and Assembly

    Energy Technology Data Exchange (ETDEWEB)

    Lapidus, Alla L.

    2009-01-01

    From the date its role in heredity was discovered, DNA has been generating interest among scientists from different fields of knowledge: physicists have studied the three dimensional structure of the DNA molecule, biologists tried to decode the secrets of life hidden within these long molecules, and technologists invent and improve methods of DNA analysis. The analysis of the nucleotide sequence of DNA occupies a special place among the methods developed. Thanks to the variety of sequencing technologies available, the process of decoding the sequence of genomic DNA (or whole genome sequencing) has become robust and inexpensive. Meanwhile the assembly of whole genome sequences remains a challenging task. In addition to the need to assemble millions of DNA fragments of different length (from 35 bp (Solexa) to 800 bp (Sanger)), great interest in analysis of microbial communities (metagenomes) of different complexities raises new problems and pushes some new requirements for sequence assembly tools to the forefront. The genome assembly process can be divided into two steps: draft assembly and assembly improvement (finishing). Despite the fact that automatically performed assembly (or draft assembly) is capable of covering up to 98% of the genome, in most cases, it still contains incorrectly assembled reads. The error rate of the consensus sequence produced at this stage is about 1/2000 bp. A finished genome represents the genome assembly of much higher accuracy (with no gaps or incorrectly assembled areas) and quality ({approx}1 error/10,000 bp), validated through a number of computer and laboratory experiments.

  4. Bi-connected Gravity Fields

    CERN Document Server

    Bel, Lluís

    2016-01-01

    I describe a bi-connection formalism of General relativity based on the dual role of the Weitzenb\\"{o}ck connection defining the parallelism at a distance and the concomitant Levi-Civita connection derived from the Riemannian metric. A more explicit tensor writing of the geodesic and loxodromic equations clarifies their joint meaning.

  5. Positive fast sealing union connections

    Science.gov (United States)

    Kleber, C. M.

    1972-01-01

    Union connections are designed for connecting high pressure flexible hoses from gas storage manifolds to gas transport trailers. Connection uses O ring seals which can be quickly assembled and disassembled without use of wrenches, and which do not twist hose. Worn or damaged O rings are easily replaced.

  6. The Berry's connection

    International Nuclear Information System (INIS)

    A course on the Berry's connection is presented. The main steps leading to the Berry's discovery are reviewed and the obtained equations are examined. Some applications of Berry's formulation are presented. They include diatomic molecules, dipole-quadrupole interaction in spherical mucleus and diabolic pair transfer. The experimental results presented are the spectrum of the Na3 molecule, the propagation of photons in an helical optical fiber and the neutron spin rotation. Non-abelian problems and the Aharonow-Anandan phase are discussed

  7. Skeletal muscle connective tissue

    DEFF Research Database (Denmark)

    Brüggemann, Dagmar Adeline

      The connective tissue content of skeletal muscle is believed to be the major factor responsible for defining the eating quality of different meat cuts, although attempts to correlate quantifications based on traditional histological methods have not as yet been able to prove this relation...... systems of muscle have been visualized in their full complexity, including the ‘neglected' lymphatic capillaries at the level of the endomysium. These findings serve to remind us that muscle contraction is not only about force generation and transmission, but also about nutrient supply and waste removal...

  8. Roles of repetitive sequences

    Energy Technology Data Exchange (ETDEWEB)

    Bell, G.I.

    1991-12-31

    The DNA of higher eukaryotes contains many repetitive sequences. The study of repetitive sequences is important, not only because many have important biological function, but also because they provide information on genome organization, evolution and dynamics. In this paper, I will first discuss some generic effects that repetitive sequences will have upon genome dynamics and evolution. In particular, it will be shown that repetitive sequences foster recombination among, and turnover of, the elements of a genome. I will then consider some examples of repetitive sequences, notably minisatellite sequences and telomere sequences as examples of tandem repeats, without and with respectively known function, and Alu sequences as an example of interspersed repeats. Some other examples will also be considered in less detail.

  9. DNA sequencing conference, 2

    Energy Technology Data Exchange (ETDEWEB)

    Cook-Deegan, R.M. [Georgetown Univ., Kennedy Inst. of Ethics, Washington, DC (United States); Venter, J.C. [National Inst. of Neurological Disorders and Strokes, Bethesda, MD (United States); Gilbert, W. [Harvard Univ., Cambridge, MA (United States); Mulligan, J. [Stanford Univ., CA (United States); Mansfield, B.K. [Oak Ridge National Lab., TN (United States)

    1991-06-19

    This conference focused on DNA sequencing, genetic linkage mapping, physical mapping, informatics and bioethics. Several were used to study this sequencing and mapping. This article also discusses computer hardware and software aiding in the mapping of genes.

  10. Anomaly Detection in Sequences

    Data.gov (United States)

    National Aeronautics and Space Administration — We present a set of novel algorithms which we call sequenceMiner, that detect and characterize anomalies in large sets of high-dimensional symbol sequences that...

  11. sequenceMiner algorithm

    Data.gov (United States)

    National Aeronautics and Space Administration — Detecting and describing anomalies in large repositories of discrete symbol sequences. sequenceMiner has been open-sourced! Download the file below to try it out....

  12. The LHC sequencer

    International Nuclear Information System (INIS)

    The Large Hadron Collider (LHC) at CERN is a highly complex system made of many different sub-systems whose operation implies the execution of many tasks with stringent constraints on the order and duration of the execution. To be able to operate such a system in the most efficient and reliable way, the operators in the CERN control room use a high level control system: the LHC Sequencer. The LHC Sequencer system is composed of several components, including an Oracle database where operational sequences are configured, a core server that orchestrates the execution of the sequences, and two graphical user interfaces: one for sequence edition, and another for sequence execution. This paper describes the architecture of the LHC Sequencer system, and how the sequences are prepared and used for LHC operation. (authors)

  13. The LHC Sequencer

    CERN Document Server

    Alemany-Fernandez, Reyes; Gorbonosov, Roman; Khasbulatov, Denis; Lamont, Mike; Le Roux, Pascal; Roderick, Chris

    2011-01-01

    The Large Hadron Collider (LHC) at CERN is a highly complex system made of many different sub-systems whose operation implies the execution of many tasks with stringent constraints on the order and duration of the execution. To be able to operate such a system in the most efficient and reliable way, the operators in the CERN control room use a high level control system: the LHC Sequencer. The LHC Sequencer system is composed of several components, including an Oracle database where operational sequences are configured, a core server that orchestrates the execution of the sequences, and two graphical user interfaces: one for sequence edition, and another for sequence execution. This paper describes the architecture of the LHC Sequencer system, and how the sequences are prepared and used for LHC operation.

  14. LHCb connects its pipes

    CERN Multimedia

    2006-01-01

    Two weeks ago the first beryllium section of the LHCb beam vacuum chamber was installed. This three-day operation, after requiring lengthy preparation work, demanded patience and precision as the first of four sections of the beampipe was connected to the vertex locator (VeLo) vacuum vessel. The AT-VAC Group with the collaboration of PH/LBD, including Gloria Corti, Tatsuya Nakada, Patrice Mermet, Delios Ramos, Frans Mul, Bruno Versollato, Bernard Corajod, and Raymond Veness. (Not pictured: Adriana Rossi and Laurent Bouvet) This first installed section is composed of a nearly two-metre long conical tube of one-millimetre thick beryllium and of a thin spherical-shaped window, 800 millimeter diameter, made of an aluminum alloy, and has the appearance of a mushroom lying on its side. The window is connected to the conical part of the beampipe through an aluminum alloy bellow, which is needed to allow for mechanical alignment once the assembly is installed. Beryllium was chosen as the material for 12 m of the 19...

  15. Piston and connecting rod assembly

    Science.gov (United States)

    Brogdon, James William (Inventor); Gill, David Keith (Inventor); Chatten, John K. (Inventor)

    2001-01-01

    A piston and connecting rod assembly includes a piston crown, a piston skirt, a connecting rod, and a bearing insert. The piston skirt is a component separate from the piston crown and is connected to the piston crown to provide a piston body. The bearing insert is a component separate from the piston crown and the piston skirt and is fixedly disposed within the piston body. A bearing surface of a connecting rod contacts the bearing insert to thereby movably associate the connecting rod and the piston body.

  16. Whole Genome Mapping with Feature Sets from High-Throughput Sequencing Data.

    Science.gov (United States)

    Pan, Yonglong; Wang, Xiaoming; Liu, Lin; Wang, Hao; Luo, Meizhong

    2016-01-01

    A good physical map is essential to guide sequence assembly in de novo whole genome sequencing, especially when sequences are produced by high-throughput sequencing such as next-generation-sequencing (NGS) technology. We here present a novel method, Feature sets-based Genome Mapping (FGM). With FGM, physical map and draft whole genome sequences can be generated, anchored and integrated using the same data set of NGS sequences, independent of restriction digestion. Method model was created and parameters were inspected by simulations using the Arabidopsis genome sequence. In the simulations, when ~4.8X genome BAC library including 4,096 clones was used to sequence the whole genome, ~90% of clones were successfully connected to physical contigs, and 91.58% of genome sequences were mapped and connected to chromosomes. This method was experimentally verified using the existing physical map and genome sequence of rice. Of 4,064 clones covering 115 Mb sequence selected from ~3 tiles of 3 chromosomes of a rice draft physical map, 3,364 clones were reconstructed into physical contigs and 98 Mb sequences were integrated into the 3 chromosomes. The physical map-integrated draft genome sequences can provide permanent frameworks for eventually obtaining high-quality reference sequences by targeted sequencing, gap filling and combining other sequences. PMID:27611682

  17. Repdigits in -Lucas Sequences

    Indian Academy of Sciences (India)

    Jhon J J Bravo; Florian Luca

    2014-05-01

    For an integer ≥ 2, let $(L_n^{(k)})_n$ be the -Lucas sequence which starts with $0,\\ldots,0,2,1$ ( terms) and each term afterwards is the sum of the preceding terms. In 2000, Luca (Port. Math. 57(2) 2000 243-254) proved that 11 is the largest number with only one distinct digit (the so-called repdigit) in the sequence $(L_n^{(2)})_n$. In this paper, we address a similar problem in the family of -Lucas sequences. We also show that the -Lucas sequences have similar properties to those of -Fibonacci sequences and occur in formulae simultaneously with the latter.

  18. Low autocorrelation binary sequences

    Science.gov (United States)

    Packebusch, Tom; Mertens, Stephan

    2016-04-01

    Binary sequences with minimal autocorrelations have applications in communication engineering, mathematics and computer science. In statistical physics they appear as groundstates of the Bernasconi model. Finding these sequences is a notoriously hard problem, that so far can be solved only by exhaustive search. We review recent algorithms and present a new algorithm that finds optimal sequences of length N in time O(N {1.73}N). We computed all optimal sequences for N≤slant 66 and all optimal skewsymmetric sequences for N≤slant 119.

  19. Connecting Science with Society

    DEFF Research Database (Denmark)

    of two seas are exchanged, but also goods and culture. In a similar way, Current Research Information Systems are at the intersection between (publicly funded) research and society. They do not only connect actors, activities and results within the research domain but also play a crucial role in raising...... awareness of the important questions of our society reflected in scientific research and of the answers produced by these research activities. The CRIS2010 conference, entitled “Bringing Science to Society”, therefore seeks to highlight the role of Current Research Information Systems for communicating...... research outcomes to the relevant stakeholders in society as a whole. Researchers, research managers, policy makers and Chief Information Officers, to name just a view, are not the only groups which value the richness of research data a CRIS provides for planning, managing and evaluating research...

  20. Connecting the Production Multiple

    DEFF Research Database (Denmark)

    Lichen, Alex Yu; Mouritsen, Jan

    was implementing sales and operations planning (S&OP) process to foster integration on its demand chain. Although actors wanted to see what it is to produce, that is to say, the object Production, as a singular object that could be diffused across time and space, Production became more multiple because the S......&OP process itself is a fluid object, but there is still possibility to organise the messy Production. There are connections between the Production multiple and the managerial technology fluid. The fluid enacted the multiplicity of Production thus making it more difficult to be organised because there were...... in this sense attracts different absent local practices, which in turn make accounting fluid to account for the Production multiple. The accounting fluid brings together accounting inscriptions and particularity of locals. In the language of circulating references, reduction and amplification no longer go...

  1. Quick-Connect Nut

    Science.gov (United States)

    1999-01-01

    Marshall Space Flight Center (MSFC) has developed a specially-designed nut, called the Quick-Connect Nut, for quick and easy assembly of components in the harsh environment of space, as in assembly of International Space Station. The design permits nuts to be installed simply by pushing them onto standard bolts, then giving a quick twist. To remove, they are unscrewed like conventional nuts. Possible applications include the mining industry for erecting support barriers, assembling underwater oil drilling platforms, fire-fighting equipment, scaffolding, assembly-line machinery, industrial cranes, and even changing lug nuts on race cars. The speed of assembly can make the difference between life and death in different aspects of life on Earth.

  2. More features, greater connectivity.

    Science.gov (United States)

    Hunt, Sarah

    2015-09-01

    Changes in our political infrastructure, the continuing frailties of our economy, and a stark growth in population, have greatly impacted upon the perceived stability of the NHS. Healthcare teams have had to adapt to these changes, and so too have the technologies upon which they rely to deliver first-class patient care. Here Sarah Hunt, marketing co-ordinator at Aid Call, assesses how the changing healthcare environment has affected one of its fundamental technologies - the nurse call system, argues the case for wireless such systems in terms of what the company claims is greater adaptability to changing needs, and considers the ever-wider range of features and functions available from today's nurse call equipment, particularly via connectivity with both mobile devices, and ancillaries ranging from enuresis sensors to staff attack alert 'badges'. PMID:26548128

  3. Connect the future

    Institute of Scientific and Technical Information of China (English)

    李柯翰

    2015-01-01

    <正>China has been developed so rapidly that it economic strength grows fast like a rocket.It leads China to become the World’s second-largest economy.Because the change of our life conditions,more and more people are wiling to go abroad,in order to feel the fresh air,civilized language,advanced science,and harmony atmosphere,all of these things like baptism which shocked people’s heart.The pursuit of better life quality requires more and more important elements such as beautiful landscape,clean lake,elegant buildings,rigorous law and kind people,since the beauty of landscape depends on it’s quality,the prosperity of a country rely on it’s power.I’ve been dreaming to become a messenger who can establish connect between different countries and various people.

  4. The Connectivity Analysis of Intermittent Connected Wireless Network

    Institute of Scientific and Technical Information of China (English)

    Li Yun; Zhou Yahui; Liu Qilie; Wang Xiaoying

    2009-01-01

    The connectivity is a basic and important characteristic to the network, it expresses the situation of link connectivity directly, and provides important reference for the entire network plan. Using statistics and probability Theory, this article emphasizes the probability between any two nodes in the network which nodes are equally distributed and the connectivity of whole network. At last, this article has made verification through simulation and has made out a conclusion, the simulation result agrees with theoretical analysis.

  5. Robot Sequencing and Visualization Program (RSVP)

    Science.gov (United States)

    Cooper, Brian K.; Maxwell,Scott A.; Hartman, Frank R.; Wright, John R.; Yen, Jeng; Toole, Nicholas T.; Gorjian, Zareh; Morrison, Jack C

    2013-01-01

    The Robot Sequencing and Visualization Program (RSVP) is being used in the Mars Science Laboratory (MSL) mission for downlink data visualization and command sequence generation. RSVP reads and writes downlink data products from the operations data server (ODS) and writes uplink data products to the ODS. The primary users of RSVP are members of the Rover Planner team (part of the Integrated Planning and Execution Team (IPE)), who use it to perform traversability/articulation analyses, take activity plan input from the Science and Mission Planning teams, and create a set of rover sequences to be sent to the rover every sol. The primary inputs to RSVP are downlink data products and activity plans in the ODS database. The primary outputs are command sequences to be placed in the ODS for further processing prior to uplink to each rover. RSVP is composed of two main subsystems. The first, called the Robot Sequence Editor (RoSE), understands the MSL activity and command dictionaries and takes care of converting incoming activity level inputs into command sequences. The Rover Planners use the RoSE component of RSVP to put together command sequences and to view and manage command level resources like time, power, temperature, etc. (via a transparent realtime connection to SEQGEN). The second component of RSVP is called HyperDrive, a set of high-fidelity computer graphics displays of the Martian surface in 3D and in stereo. The Rover Planners can explore the environment around the rover, create commands related to motion of all kinds, and see the simulated result of those commands via its underlying tight coupling with flight navigation, motor, and arm software. This software is the evolutionary replacement for the Rover Sequencing and Visualization software used to create command sequences (and visualize the Martian surface) for the Mars Exploration Rover mission.

  6. Interstate Connections - CEHC [ds619

    Data.gov (United States)

    California Department of Resources — The California Department of Transportation (Caltrans) and California Department of Fish and Game (CDFG) commissioned the California Essential Habitat Connectivity...

  7. An Optimized and Scalable Eigensolver for Sequences of Eigenvalue Problems

    CERN Document Server

    Berljafa, Mario; Di Napoli, Edoardo

    2014-01-01

    In many scientific applications the solution of non-linear differential equations are obtained through the set-up and solution of a number of successive eigenproblems. These eigenproblems can be regarded as a sequence whenever the solution of one problem fosters the initialization of the next. In addition, some eigenproblem sequences show a connection between the solutions of adjacent eigenproblems. Whenever is possible to unravel the existence of such a connection, the eigenproblem sequence is said to be a correlated. When facing with a sequence of correlated eigenproblems the current strategy amounts to solving each eigenproblem in isolation. We propose a novel approach which exploits such correlation through the use of an eigensolver based on subspace iteration and accelerated with Chebyshev polynomials (ChFSI). The resulting eigensolver, is optimized by minimizing the number of matvec multiplications and parallelized using the Elemental library framework. Numerical results shows that ChFSI achieves excell...

  8. Successive Spectral Sequences

    OpenAIRE

    Matschke, Benjamin

    2013-01-01

    If a chain complex is filtered over a poset I, then for every chain in I we obtain a spectral sequence. In this paper we define a spectral system that contains all these spectral sequences and relates their pages via differentials, extensions, and natural isomorphisms. We also study an analog of exact couples that provides a more general construction method for these spectral systems. This turns out to be a good framework for unifying several spectral sequences that one would usually apply on...

  9. Sequences of commutator operations

    CERN Document Server

    Aichinger, Erhard

    2012-01-01

    Given the congruence lattice L of a finite algebra A with a Mal'cev term, we look for those sequences of operations on L that are sequences of higher commutator operations of expansions of A. The properties of higher commutators proved so far delimit the number of such sequences: the number is always at most countably infinite; if it is infinite, then L is the union of two proper subintervals with nonempty intersection.

  10. Efficient multivariate sequence classification

    OpenAIRE

    Kuksa, Pavel P.

    2014-01-01

    Kernel-based approaches for sequence classification have been successfully applied to a variety of domains, including the text categorization, image classification, speech analysis, biological sequence analysis, time series and music classification, where they show some of the most accurate results. Typical kernel functions for sequences in these domains (e.g., bag-of-words, mismatch, or subsequence kernels) are restricted to {\\em discrete univariate} (i.e. one-dimensional) string data, such ...

  11. Uncommon Connections with Common Numerators

    Science.gov (United States)

    Lesser, Lawrence M.; Guthrie, Joe A.

    2012-01-01

    Undergraduate students who are pre-service teachers need to make connections between the college mathematics they are learning and the pre-college mathematics they will be teaching. Spanning a broad range of undergraduate curricula, this article describes useful lesser-known connections, explorations, and original proofs involving fractions. In…

  12. The Always-Connected Generation

    Science.gov (United States)

    Bull, Glen

    2010-01-01

    The Pew Internet and American Life project characterizes the millennials--the first generation to come of age in the new millennium--as the first "always-connected" generation. Significant aspects of culture are changing as a result. A changing world where all students are connected all the time has substantial educational implications. Despite…

  13. Ideal Systems and Connecting Orbits

    Institute of Scientific and Technical Information of China (English)

    Shu-xiang Yu; Zuo-huan Zheng; Fan-nu Hu

    2004-01-01

    In this paper,we study a class of dynamical systems in R nideal systems and give an existence criterion of quasi-connecting orbits for such systems.Also,an existence criterion of connecting orbits for general systems is given.

  14. Carl Sagan's Cosmic Connection

    Science.gov (United States)

    Sagan, Carl; Agel, Jerome

    2000-08-01

    Foreword Freeman Dyson; Personal reflections Ann Druyan; Preface; Part I. Cosmic Perspective: 1. A transitional animal; 2. The Unicorn of Cetus; 3. A message from earth; 4. A message to earth; 5. Experiments in utopias; 6. Chauvinism; 7. Space exploration as a human enterprise I. The scientific interest; 8. Space exploration as a human enterprise II. The public interest; 9. Space exploration as a human enterprise III. The historical interest; Part II. The Solar System: 10. On teaching the first grade; 11. 'The ancient and legendary Gods of old'; 12. The Venus detective story; 13. Venus is hell; 14. Science and 'intelligence'; 15. The moons of Barsoom; 16. The mountains of Mars I. Observations from earth; 17. The mountains of Mars II. Observations from space; 18. The canals of Mars; 19. The lost pictures of Mars; 20. The Ice Age and the cauldron; 21. Beginnings and ends of the Earth; 22. Terraforming the plants; 23. The exploration and utlization of the solar system; Part III. Beyond the Solar System: 24. Some of my best friends are dolphins; 25. 'Hello, central casting? Send me twenty extraterrestrials'; 26. The cosmic connection; 27. Extraterrestrial life: an idea whose time has come; 28. Has the Earth been visited?; 29. A search strategy for detecting extraterrestrial intelligence; 30. If we succeed 31. Cables, drums, and seashells; 32. The night freight to the stars; 33. Astroengineering; 34. Twenty questions: a classification of cosmic civilisations; 35. Galactic cultural exchanges; 36. A passage to elsewhere; 37. Starfolk I. A Fable; 38. Starfolk II. A future; 39. Starfolk III. The cosmic Cheshire cats; Epilog David Morrison; Index.

  15. Hardware bitstream sequence recognizer

    OpenAIRE

    Karpin, Oleksandr; Sokil, Volodymyr

    2009-01-01

    This paper describes how to implement in hardware a bistream sequence recognizer using the PSoC Pseudo Random Sequence Generator (PRS) User Module. The PRS can be used in digital communication systems with the serial data interface for automatic preamble detection and extraction, control words selection, etc.

  16. Cosmetology: Scope and Sequence.

    Science.gov (United States)

    Nashville - Davidson County Metropolitan Public Schools, TN.

    This scope and sequence guide, developed for a cosmetology vocational education program, represents an initial step in the development of a systemwide articulated curriculum sequence for all vocational programs within the Metropolitan Nashville Public School System. It was developed as a result of needs expressed by teachers, parents, and the…

  17. Weakly connected domination critical graphs

    Directory of Open Access Journals (Sweden)

    Magdalena Lemańska

    2008-01-01

    Full Text Available A dominating set \\(D \\subset V(G\\ is a weakly connected dominating set in \\(G\\ if the subgraph \\(G[D]_w = (N_{G}[D],E_w\\ weakly induced by \\(D\\ is connected, where \\(E_w\\ is the set of all edges with at least one vertex in \\(D\\. The weakly connected domination number \\(\\gamma_w(G\\ of a graph \\(G\\ is the minimum cardinality among all weakly connected dominating sets in \\(G\\. The graph is said to be weakly connected domination critical (\\(\\gamma_w\\-critical if for each \\(u, v \\in V(G\\ with \\(v\\ not adjacent to \\(u\\, \\(\\gamma_w(G + vu \\lt \\gamma_w (G\\. Further, \\(G\\ is \\(k\\-\\(\\gamma_w\\-critical if \\(\\gamma_w(G = k\\ and for each edge \\(e \

  18. Nucleosome dynamics: Sequence matters.

    Science.gov (United States)

    Eslami-Mossallam, Behrouz; Schiessel, Helmut; van Noort, John

    2016-06-01

    About three quarter of all eukaryotic DNA is wrapped around protein cylinders, forming nucleosomes. Even though the histone proteins that make up the core of nucleosomes are highly conserved in evolution, nucleosomes can be very different from each other due to posttranslational modifications of the histones. Another crucial factor in making nucleosomes unique has so far been underappreciated: the sequence of their DNA. This review provides an overview of the experimental and theoretical progress that increasingly points to the importance of the nucleosomal base pair sequence. Specifically, we discuss the role of the underlying base pair sequence in nucleosome positioning, sliding, breathing, force-induced unwrapping, dissociation and partial assembly and also how the sequence can influence higher-order structures. A new view emerges: the physical properties of nucleosomes, especially their dynamical properties, are determined to a large extent by the mechanical properties of their DNA, which in turn depends on DNA sequence. PMID:26896338

  19. Protein sequence databases.

    Science.gov (United States)

    Apweiler, Rolf; Bairoch, Amos; Wu, Cathy H

    2004-02-01

    A variety of protein sequence databases exist, ranging from simple sequence repositories, which store data with little or no manual intervention in the creation of the records, to expertly curated universal databases that cover all species and in which the original sequence data are enhanced by the manual addition of further information in each sequence record. As the focus of researchers moves from the genome to the proteins encoded by it, these databases will play an even more important role as central comprehensive resources of protein information. Several the leading protein sequence databases are discussed here, with special emphasis on the databases now provided by the Universal Protein Knowledgebase (UniProt) consortium. PMID:15036160

  20. Evolution of DNA Sequencing

    International Nuclear Information System (INIS)

    Sanger and coworkers introduced DNA sequencing in 1970s for the first time. It principally relied on termination of growing nucleotide chain when a dideoxythymidine triphosphate (ddTTP) was inserted in it. Detection of terminated sequences was done radiographically on Polyacrylamide Gel Electrophoresis (PAGE). Improvements that have evolved over time in original Sanger sequencing include replacement of radiography with fluorescence, use of separate fluorescent markers for each nucleotide, use of capillary electrophoresis instead of polyacrylamide gel electrophoresis and then introduction of capillary array electrophoresis. However, this technique suffered from few inherent limitations like decreased sensitivity for low level mutant alleles, complexities in analyzing highly polymorphic regions like Major Histocompatibility Complex (MHC) and high DNA concentrations required. Several Next Generation Sequencing (NGS) technologies have been introduced by Roche, Illumina and other commercial manufacturers that tend to overcome Sanger sequencing limitations and have been reviewed. Introduction of NGS in clinical research and medical diagnostics is expected to change entire diagnostic approach. These include study of cancer variants, detection of minimal residual disease, exome sequencing, detection of Single Nucleotide Polymorphisms (SNPs) and their disease association, epigenetic regulation of gene expression and sequencing of microorganisms genome. (author)

  1. Mapping sequences by parts

    Directory of Open Access Journals (Sweden)

    Guziolowski Carito

    2007-09-01

    Full Text Available Abstract Background: We present the N-map method, a pairwise and asymmetrical approach which allows us to compare sequences by taking into account evolutionary events that produce shuffled, reversed or repeated elements. Basically, the optimal N-map of a sequence s over a sequence t is the best way of partitioning the first sequence into N parts and placing them, possibly complementary reversed, over the second sequence in order to maximize the sum of their gapless alignment scores. Results: We introduce an algorithm computing an optimal N-map with time complexity O (|s| × |t| × N using O (|s| × |t| × N memory space. Among all the numbers of parts taken in a reasonable range, we select the value N for which the optimal N-map has the most significant score. To evaluate this significance, we study the empirical distributions of the scores of optimal N-maps and show that they can be approximated by normal distributions with a reasonable accuracy. We test the functionality of the approach over random sequences on which we apply artificial evolutionary events. Practical Application: The method is illustrated with four case studies of pairs of sequences involving non-standard evolutionary events.

  2. HIV Sequence Compendium 2015

    Energy Technology Data Exchange (ETDEWEB)

    Foley, Brian Thomas [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Leitner, Thomas Kenneth [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Apetrei, Cristian [Univ. of Pittsburgh, PA (United States); Hahn, Beatrice [Univ. of Pennsylvania, Philadelphia, PA (United States); Mizrachi, Ilene [National Center for Biotechnology Information, Bethesda, MD (United States); Mullins, James [Univ. of Washington, Seattle, WA (United States); Rambaut, Andrew [Univ. of Edinburgh, Scotland (United Kingdom); Wolinsky, Steven [Northwestern Univ., Evanston, IL (United States); Korber, Bette Tina Marie [Los Alamos National Lab. (LANL), Los Alamos, NM (United States)

    2015-10-05

    This compendium is an annual printed summary of the data contained in the HIV sequence database. We try to present a judicious selection of the data in such a way that it is of maximum utility to HIV researchers. Each of the alignments attempts to display the genetic variability within the different species, groups and subtypes of the virus. This compendium contains sequences published before January 1, 2015. Hence, though it is published in 2015 and called the 2015 Compendium, its contents correspond to the 2014 curated alignments on our website. The number of sequences in the HIV database is still increasing. In total, at the end of 2014, there were 624,121 sequences in the HIV Sequence Database, an increase of 7% since the previous year. This is the first year that the number of new sequences added to the database has decreased compared to the previous year. The number of near complete genomes (>7000 nucleotides) increased to 5834 by end of 2014. However, as in previous years, the compendium alignments contain only a fraction of these. A more complete version of all alignments is available on our website, http://www.hiv.lanl.gov/ content/sequence/NEWALIGN/align.html As always, we are open to complaints and suggestions for improvement. Inquiries and comments regarding the compendium should be addressed to seq-info@lanl.gov.

  3. Enhanced MR imaging sequencing and calibration with a personal computer

    International Nuclear Information System (INIS)

    This paper reports on a commercial MR imaging system to permit all combination of parameter values that the machine can support the facilitate implementation of experimental sequences. Personal computers (PCs) were connected to Toshiba 0.35-T MR imaging systems by means of special file-transfer software. PC programs generated control sequences dynamically. Calibration was performed using numeric calculation of phase moments from a multiparameter model of gradient coil performance. An associated data base allowed new sequence types to be introduced without programming or calibration. Options included velocity nulling, cardiac multiphase imaging, and presaturation of arbitrary volumes

  4. Representing objects, relations, and sequences.

    Science.gov (United States)

    Gallant, Stephen I; Okaywe, T Wendy

    2013-08-01

    Vector symbolic architectures (VSAs) are high-dimensional vector representations of objects (e.g., words, image parts), relations (e.g., sentence structures), and sequences for use with machine learning algorithms. They consist of a vector addition operator for representing a collection of unordered objects, a binding operator for associating groups of objects, and a methodology for encoding complex structures. We first develop constraints that machine learning imposes on VSAs; for example, similar structures must be represented by similar vectors. The constraints suggest that current VSAs should represent phrases ("The smart Brazilian girl") by binding sums of terms, in addition to simply binding the terms directly. We show that matrix multiplication can be used as the binding operator for a VSA, and that matrix elements can be chosen at random. A consequence for living systems is that binding is mathematically possible without the need to specify, in advance, precise neuron-to-neuron connection properties for large numbers of synapses. A VSA that incorporates these ideas, Matrix Binding of Additive Terms (MBAT), is described that satisfies all constraints. With respect to machine learning, for some types of problems appropriate VSA representations permit us to prove learnability rather than relying on simulations. We also propose dividing machine (and neural) learning and representation into three stages, with differing roles for learning in each stage. For neural modeling, we give representational reasons for nervous systems to have many recurrent connections, as well as for the importance of phrases in language processing. Sizing simulations and analyses suggest that VSAs in general, and MBAT in particular, are ready for real-world applications. PMID:23607563

  5. Framework for Connections on Facebook

    DEFF Research Database (Denmark)

    Sudzina, Frantisek

    There is a substantial amount of current information systems and marketing research focused on social networking sites, most frequently on Facebook. Often, these studies utilize available metadata on user on-line behavior, such as what links the users clicked on. In order to better understand...... behavior of Facebook users, it makes sense to investigate also whom the users connect to. It is possible to hypothesize that behavior of people, who connect only to relatives on Facebook, differs from behavior of people, who are connected only to their classmates. The paper offers a framework of Facebook...

  6. Several graph sequences as solutions of a double recurrence

    OpenAIRE

    Brouder, Christian; Keith, William J.; Mestre, Ângela

    2013-01-01

    We describe the combinatorics that arise in summing a double recursion formula for the enumeration of connected Feynman graphs in quantum field theory. In one index the problem is more tractable and yields concise formulas which are combinatorially interesting on their own. In the other index, one of these sums is Sloane's sequence A001865.

  7. 33 CFR 156.130 - Connection.

    Science.gov (United States)

    2010-07-01

    ... operations unless it is: (1) A bolted or full threaded connection; or (2) A quick-connect coupling acceptable... 33 Navigation and Navigable Waters 2 2010-07-01 2010-07-01 false Connection. 156.130 Section 156....130 Connection. (a) Each person who makes a connection for transfer operations shall: (1) Use...

  8. Strongly 2-connected orientations of graphs

    DEFF Research Database (Denmark)

    Thomassen, Carsten

    2014-01-01

    We prove that a graph admits a strongly 2-connected orientation if and only if it is 4-edge-connected, and every vertex-deleted subgraph is 2-edge-connected. In particular, every 4-connected graph has such an orientation while no cubic 3-connected graph has such an orientation....

  9. Biological sequence analysis

    DEFF Research Database (Denmark)

    Durbin, Richard; Eddy, Sean; Krogh, Anders Stærmose;

    This book provides an up-to-date and tutorial-level overview of sequence analysis methods, with particular emphasis on probabilistic modelling. Discussed methods include pairwise alignment, hidden Markov models, multiple alignment, profile searches, RNA secondary structure analysis, and...

  10. Yeast genome sequencing:

    DEFF Research Database (Denmark)

    Piskur, Jure; Langkjær, Rikke Breinhold

    2004-01-01

    For decades, unicellular yeasts have been general models to help understand the eukaryotic cell and also our own biology. Recently, over a dozen yeast genomes have been sequenced, providing the basis to resolve several complex biological questions. Analysis of the novel sequence data has shown...... of closely related species helps in gene annotation and to answer how many genes there really are within the genomes. Analysis of non-coding regions among closely related species has provided an example of how to determine novel gene regulatory sequences, which were previously difficult to analyse because...... they are short and degenerate and occupy different positions. Comparative genomics helps to understand the origin of yeasts and points out crucial molecular events in yeast evolutionary history, such as whole-genome duplication and horizontal gene transfer(s). In addition, the accumulating sequence data provide...

  11. Cybersecurity for Connected Diabetes Devices.

    Science.gov (United States)

    Klonoff, David C

    2015-09-01

    Diabetes devices are increasingly connected wirelessly to each other and to data-displaying reader devices. Threats to the accurate flow of information and commands may compromise the function of these devices and put their users at risk of health complications. Sound cybersecurity of connected diabetes devices is necessary to maintain confidentiality, integrity, and availability of the data and commands. Diabetes devices can be hacked by unauthorized agents and also by patients themselves to extract data that are not automatically provided by product software. Unauthorized access to connected diabetes devices has been simulated and could happen in reality. A cybersecurity standard designed specifically for connected diabetes devices will improve the safety of these products and increase confidence of users that the products will be secure. PMID:25883162

  12. Twistor connection and conformal gravity

    International Nuclear Information System (INIS)

    The notion of the local twistor connection is introduced. For the Yang-Mills lagrangian of the standard twistor connection (depending on the metric and its first and second partial derivatives) two variational principles are formulated: variations for the connection (leading to 60 equations of which 50 turn out to be zero identically); variations for the metric tensor (leading to 10 equations). It is shown that extreme equations of both variational principles coincide with each other and are equivalent to the vacuum Bach equations of gravity. The modification of the standard twistor connection is suggested (depending also on the Maxwell tensor). It is shown that both variational principles lead again to the same equations, ie. in the this case, to conformally invariant Bach equations of gravity in the presence of the electromagnetic field and to the free Maxwell equations

  13. THE EXISTENCE OF CONNECTING ORBITS

    Institute of Scientific and Technical Information of China (English)

    2011-01-01

    In this paper,using the notion of an isolating block and Conley's attractor theory,an existence criterion of trajectories connecting a pair of invariant sets of ordinary differential equations is given.

  14. Formal connections in deformation quantization

    DEFF Research Database (Denmark)

    Masulli, Paolo

    manifold. Gammelgaard gave an explicit formula for a class of star products in this setting. We review his construction, which is combinatorial and based on a certain family of graphs and extend it, to provide the graph formalism with the notions of composition and differentiation. We shall focus our...... attention on symplectic manifolds equipped with a family of star products, indexed by a parameter space. In this situation we can define a connection in the trivial bundle over the parameter space with fibres the formal smooth functions on the manifold, which relates the star products in the family and is...... called a formal connection. We study the question of classifying such formal connections. To each star product we can associate a certain cohomology class called the characteristic class. It turns out that a formal connection exists if and only if all the star products in the family have the same...

  15. Text Mining: (Asynchronous Sequences

    Directory of Open Access Journals (Sweden)

    Sheema Khan

    2014-12-01

    Full Text Available In this paper we tried to correlate text sequences those provides common topics for semantic clues. We propose a two step method for asynchronous text mining. Step one check for the common topics in the sequences and isolates these with their timestamps. Step two takes the topic and tries to give the timestamp of the text document. After multiple repetitions of step two, we could give optimum result.

  16. Biological sequence analysis

    OpenAIRE

    Speed, T. P.

    2003-01-01

    This talk will review a little over a decade's research on applying certain stochastic models to biological sequence analysis. The models themselves have a longer history, going back over 30 years, although many novel variants have arisen since that time. The function of the models in biological sequence analysis is to summarize the information concerning what is known as a motif or a domain in bioinformatics, and to provide a tool for discovering instances of that motif or domain in a separa...

  17. HIV Sequence Compendium 2010

    Energy Technology Data Exchange (ETDEWEB)

    Kuiken, Carla [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Foley, Brian [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Leitner, Thomas [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Apetrei, Christian [Univ. of Pittsburgh, PA (United States); Hahn, Beatrice [Univ. of Alabama, Tuscaloosa, AL (United States); Mizrachi, Ilene [National Center for Biotechnology Information, Bethesda, MD (United States); Mullins, James [Univ. of Washington, Seattle, WA (United States); Rambaut, Andrew [Univ. of Edinburgh, Scotland (United Kingdom); Wolinsky, Steven [Northwestern Univ., Evanston, IL (United States); Korber, Bette [Los Alamos National Lab. (LANL), Los Alamos, NM (United States)

    2010-12-31

    This compendium is an annual printed summary of the data contained in the HIV sequence database. In these compendia we try to present a judicious selection of the data in such a way that it is of maximum utility to HIV researchers. Each of the alignments attempts to display the genetic variability within the different species, groups and subtypes of the virus. This compendium contains sequences published before January 1, 2010. Hence, though it is called the 2010 Compendium, its contents correspond to the 2009 curated alignments on our website. The number of sequences in the HIV database is still increasing exponentially. In total, at the time of printing, there were 339,306 sequences in the HIV Sequence Database, an increase of 45% since last year. The number of near complete genomes (>7000 nucleotides) increased to 2576 by end of 2009, reflecting a smaller increase than in previous years. However, as in previous years, the compendium alignments contain only a small fraction of these. Included in the alignments are a small number of sequences representing each of the subtypes and the more prevalent circulating recombinant forms (CRFs) such as 01 and 02, as well as a few outgroup sequences (group O and N and SIV-CPZ). Of the rarer CRFs we included one representative each. A more complete version of all alignments is available on our website, http://www.hiv.lanl.gov/content/sequence/NEWALIGN/align.html. Reprints are available from our website in the form of both HTML and PDF files. As always, we are open to complaints and suggestions for improvement. Inquiries and comments regarding the compendium should be addressed to seq-info@lanl.gov.

  18. Cybersecurity for Connected Diabetes Devices

    OpenAIRE

    Klonoff, David C.

    2015-01-01

    Diabetes devices are increasingly connected wirelessly to each other and to data-displaying reader devices. Threats to the accurate flow of information and commands may compromise the function of these devices and put their users at risk of health complications. Sound cybersecurity of connected diabetes devices is necessary to maintain confidentiality, integrity, and availability of the data and commands. Diabetes devices can be hacked by unauthorized agents and also by patients themselves to...

  19. Connected Correlators in Quantum Gravity

    OpenAIRE

    Ambjorn, J.; Bialas, P.; Jurkiewicz, J.(Faculty of Physics, Astronomy and Applied Computer Science, Jagiellonian University, ul. prof. Stanislawa Lojasiewicza 11, Krakow, PL 30-348, Poland)

    1998-01-01

    We discuss the concept of connected, reparameterization invariant matter correlators in quantum gravity. We analyze the effect of discretization in two solvable cases: branched polymers and two-dimensional simplicial gravity. In both cases the naively defined connected correlators for a fixed volume display an anomalous behavior, which could be interpreted as a long-range order. We suggest that this is in fact only a highly non-trivial finite-size effect and propose an improved definition of ...

  20. Pleura: In connective tissue diseases

    OpenAIRE

    Kaushik Saha

    2016-01-01

    Connective tissue diseases (CTDs) (or collagen vascular diseases) represent a heterogeneous group of immunologically mediated disorders that affects many organs of the body including pleura. Frequency, presentation, and prognosis of pleural involvement depend on the underlying CTD. Connective tissue disorders may be heritable such as Marfan syndrome, Ehlers-Danlos syndrome, and osteogenesis imperfecta; and autoimmune such as systemic lupus erythematosus (SLE), rheumatoid arthritis (RA), syste...

  1. Servicing a Connected Car Service

    OpenAIRE

    Svensson, Benjamin; Varnai, Kristian

    2015-01-01

    Increased wireless connectivity to vehicles invites both existing and new digital methods of attack, requiring the high prioritisation of security throughout the development of not just the vehicle, but also the services provided for it. This report examines such a connected car service used by thousands of customers every day and evaluates it from a security standpoint. The methods used for this evaluation include both direct testing of vulnerabilities, as well as the examination of design c...

  2. Connected searching of weighted trees

    CERN Document Server

    Dereniowski, Dariusz

    2010-01-01

    In this paper we consider the problem of connected edge searching of weighted trees. It is shown that there exists a polynomial-time algorithm for finding optimal connected search strategy for bounded degree trees with arbitrary weights on the edges and vertices of the tree. The problem is NP-complete for general node-weighted trees (the weight of each edge is 1).

  3. Nanapore Sequencing with MSPA

    Science.gov (United States)

    Gundlach, Jens H.

    2011-10-01

    Nanopore sequencing is the simplest concept of converting the sequence of a single DNA molecule directly into an electronic signal. We introduced the protein pore MspA. derived from Mycobacterium smegmatis, to nanpore sequencing [1]. MspA has a single, narrow (-1.2nm) and short (MspA is reproducible with sub-nanometer precision and is engineerable using genetic mutations. DNA moves through the pore at rates exceeding 1nt/microsec. too fast to observe the passage of each nucleotide. However, when DNA is held with double stranded DNA sections or an avidin anchor, single nucleotides resident in MspA's constriction can be identified with highly resolved current differences. We have provided proof of principle of a nanopore sequencing method [2] in which we use DNA modified by inserting double stranded DNA-sections between every nucleotide. The double stranded sections are designed to halt translocation for long enough to sequentially read the sequence of the original DNA molecule. Prospects and developments to sequence unmodified native DNA using MspA will be discussed.[4pt] [1] T.Z. Butler, et al, PNAS 105 20647 (2008)[0pt] [2] I.M. Derrington, et al, PNAS 107 16060 (2010).

  4. Dynamical decoupling sequence construction as a filter-design problem

    CERN Document Server

    Biercuk, M J

    2010-01-01

    Over the past decade we have seen an explosion of demonstrations of quantum coherence in atomic, optical, and condensed matter systems. These developments have placed a new emphasis on the production of robust and optimal quantum control techniques in the presence of environmental noise. We discuss the use of dynamical decoupling as a form of open-loop quantum control capable of suppressing the effects of decoherence in quantum coherent systems. We introduce the concept of dynamical decoupling pulse-sequence construction as a filter-design problem, making connections with radiofrequency filter design from electrical engineering in the analysis of pulse-sequence performance. Our work takes this perspective in addressing both "standard" sequences derived from nuclear magnetic resonance and novel optimized sequences developed in the context of quantum information. We describe the physics underlying the functionality of various sequences, and compare their relative capabilities. Additionally, we review new techni...

  5. Adaptive Processing for Sequence Alignment

    KAUST Repository

    Zidan, Mohammed Affan

    2012-01-26

    Disclosed are various embodiments for adaptive processing for sequence alignment. In one embodiment, among others, a method includes obtaining a query sequence and a plurality of database sequences. A first portion of the plurality of database sequences is distributed to a central processing unit (CPU) and a second portion of the plurality of database sequences is distributed to a graphical processing unit (GPU) based upon a predetermined splitting ratio associated with the plurality of database sequences, where the database sequences of the first portion are shorter than the database sequences of the second portion. A first alignment score for the query sequence is determined with the CPU based upon the first portion of the plurality of database sequences and a second alignment score for the query sequence is determined with the GPU based upon the second portion of the plurality of database sequences.

  6. Sequence Classification: 890382 [

    Lifescience Database Archive (English)

    Full Text Available Non-TMB Non-TMH TMB Non-TMB Non-TMB Non-TMB >gi|6322042|ref|NP_012117.1| Myosin-like protein ass ... connects the nuclear pore complex with the nuclear interior ; involved in the Tel1p pathway that controls telom ...

  7. Sequence Classification: 893546 [

    Lifescience Database Archive (English)

    Full Text Available TMB Non-TMH TMB TMB Non-TMB Non-TMB >gi|6322948|ref|NP_013021.1| Myosin-like protein associated ... connects the nuclear pore complex with the nuclear interior ; involved with Tel1p in telomere length control; i ...

  8. What is next generation sequencing?

    OpenAIRE

    Behjati, Sam; Tarpey, Patrick S.

    2013-01-01

    Next generation sequencing (NGS), massively parallel or deep sequencing are related terms that describe a DNA sequencing technology which has revolutionised genomic research. Using NGS an entire human genome can be sequenced within a single day. In contrast, the previous Sanger sequencing technology, used to decipher the human genome, required over a decade to deliver the final draft. Although in genome research NGS has mostly superseded conventional Sanger sequencing, it has not yet translat...

  9. Program Synthesizes UML Sequence Diagrams

    Science.gov (United States)

    Barry, Matthew R.; Osborne, Richard N.

    2006-01-01

    A computer program called "Rational Sequence" generates Universal Modeling Language (UML) sequence diagrams of a target Java program running on a Java virtual machine (JVM). Rational Sequence thereby performs a reverse engineering function that aids in the design documentation of the target Java program. Whereas previously, the construction of sequence diagrams was a tedious manual process, Rational Sequence generates UML sequence diagrams automatically from the running Java code.

  10. Review on Cold-Formed Steel Connections

    Science.gov (United States)

    Tan, Cher Siang; Mohammad, Shahrin; Md Tahir, Mahmood; Shek, Poi Ngian

    2014-01-01

    The concept of cold-formed light steel framing construction has been widespread after understanding its structural characteristics with massive research works over the years. Connection serves as one of the important elements for light steel framing in order to achieve its structural stability. Compared to hot-rolled steel sections, cold-formed steel connections perform dissimilarity due to the thin-walled behaviour. This paper aims to review current researches on cold-formed steel connections, particularly for screw connections, storage rack connections, welded connections, and bolted connections. The performance of these connections in the design of cold-formed steel structures is discussed. PMID:24688448

  11. Intermodal Passenger Connectivity Database - Raw Data

    Data.gov (United States)

    Department of Transportation — The Intermodal Passenger Connectivity Database (IPCD) is a nationwide data table of passenger transportation terminals, with data on the availability of connections...

  12. Intermodal Passenger Connectivity Database: Raw Data

    Data.gov (United States)

    Department of Transportation — The Intermodal Passenger Connectivity Database (IPCD) is a nationwide data table of passenger transportation terminals, with data on the availability of connections...

  13. Ternary Chaotic Pulse Compression Sequences

    Directory of Open Access Journals (Sweden)

    J. B. Seventline

    2010-09-01

    Full Text Available In this paper method available for generating ternary sequences is discussed. These sequences are useful in many applications but specifically in synchronization of block codes and pulse compression in radar. The ternary sequences are derived from chaotic maps. It is feasible to achieve simultaneously superior performances in detection range and range resolution using the proposed ternary sequences. The properties of these sequences like autocorrelation function, Peak Side Lobe Ratio (PSLR, ambiguity diagram and performance under AWGN noise background has been studied. The generation of these sequences is much simpler, and the available number of sequences is virtually infinite and not limited by the length of the sequence.

  14. The Bott cofiber sequence in deformation K-theory and simultaneous similarity in U(n)

    OpenAIRE

    Lawson, Tyler

    2008-01-01

    We show that there is a homotopy cofiber sequence of spectra relating Carlsson's deformation K-theory of a group G to its "deformation representation ring," analogous to the Bott periodicity sequence relating connective K-theory to ordinary homology. We then apply this to study simultaneous similarity of unitary matrices.

  15. A^I-statistical convergence with respect to a sequence of modulus functions

    OpenAIRE

    Yamancı, Ulaş; GÜRDAL, MEHMET; Saltan, Suna

    2012-01-01

    In this paper, we introduce the notion of A^{I}-[V,λ]-summability and A^{I}-λ-statistical convergence with respect to a sequence of modulus functions. We basically study some connections between A^{I}-λ-statistical convergence and A^{I}-statistical convergence with respect to a sequence of modulus functions.

  16. Extremal properties of (epi)Sturmian sequences and distribution modulo 1

    OpenAIRE

    Allouche, Jean-Paul; Glen, Amy

    2009-01-01

    Starting from a study of Y. Bugeaud and A. Dubickas (2005) on a question in distribution of real numbers modulo 1 via combinatorics on words, we survey some combinatorial properties of (epi)Sturmian sequences and distribution modulo 1 in connection to their work. In particular we focus on extremal properties of (epi)Sturmian sequences, some of which have been rediscovered several times.

  17. Continuously Connected With Mobile IP

    Science.gov (United States)

    2002-01-01

    Cisco Systems developed Cisco Mobile Networks, making IP devices mobile. With this innovation, a Cisco router and its connected IP devices can roam across network boundaries and connection types. Because a mobile user is able to keep the same IP address while roaming, a live IP connection can be maintained without interruption. Glenn Research Center jointly tested the technology with Cisco, and is working to use it on low-earth-orbiting research craft. With Cisco's Mobile Networks functionality now available in Cisco IOS Software release 12.2(4)T, the commercial advantages and benefits are numerous. The technology can be applied to public safety, military/homeland security, emergency management services, railroad and shipping systems, and the automotive industry. It will allow ambulances, police, firemen, and the U.S. Coast Guard to stay connected to their networks while on the move. In the wireless battlefield, the technology will provide rapid infrastructure deployment for U.S. national defense. Airline, train, and cruise passengers utilizing Cisco Mobile Networks can fly all around the world with a continuous Internet connection. Cisco IOS(R) Software is a registered trademark of Cisco Systems.

  18. Sequencing BPS Spectra

    CERN Document Server

    Gukov, Sergei; Saberi, Ingmar; Stosic, Marko; Sulkowski, Piotr

    2015-01-01

    This paper provides both a detailed study of color-dependence of link homologies, as realized in physics as certain spaces of BPS states, and a broad study of the behavior of BPS states in general. We consider how the spectrum of BPS states varies as continuous parameters of a theory are perturbed. This question can be posed in a wide variety of physical contexts, and we answer it by proposing that the relationship between unperturbed and perturbed BPS spectra is described by a spectral sequence. These general considerations unify previous applications of spectral sequence techniques to physics, and explain from a physical standpoint the appearance of many spectral sequences relating various link homology theories to one another. We also study structural properties of colored HOMFLY homology for links and evaluate Poincar\\'e polynomials in numerous examples. Among these structural properties is a novel "sliding" property, which can be explained by using (refined) modular $S$-matrix. This leads to the identifi...

  19. DNA sequencing: chemical methods

    International Nuclear Information System (INIS)

    Limited base-specific or base-selective cleavage of a defined DNA fragment yields polynucleotide products, the length of which correlates with the positions of the particular base (or bases) in the original fragment. Sverdlov and co-workers recognized the possibility of using this principle for the determination of DNA sequences. In 1977 a fully elaborated method was introduced based on this principle, which allowed routine analysis of DNA sequences over distances greater than 100 nucleotide unite from a defined, radiolabeled terminus. Six procedures for partial cleavage were described. Simultaneous parallel resolution of an appropriate set of partial cleavage mixtures by polyacrylamide gel electrophoresis, followed by visualization of the radioactive bands by autoradiography, allows the deduction of nucleotide sequence

  20. Next-generation sequencing

    DEFF Research Database (Denmark)

    Rieneck, Klaus; Bak, Mads; Jønson, Lars;

    2013-01-01

    information obtained allows well for statistical analysis of the data. This general approach can be integrated into current laboratory practice and has numerous applications. Besides DNA-based predictions of blood group phenotypes, platelet phenotypes, or sickle cell anemia, and the determination of zygosity......, Illumina); several millions of PCR sequences were analyzed. RESULTS: The results demonstrated the feasibility of diagnosing the fetal KEL1 or KEL2 blood group from cell-free DNA purified from maternal plasma. CONCLUSION: This method requires only one primer pair, and the large amount of sequence...

  1. MANAGERS CONNECTED THROUGH INFORMATION TECHNOLOGY

    Directory of Open Access Journals (Sweden)

    Osmarina Pedro Garcia Garcia

    2015-06-01

    Full Text Available This study had as its central objective to ascertain how managers connect with information technology. The methodology applied was an exploratory research, through a structured questionnaire survey based on qualitative and quantitative approach. The study interviewed eighteen managers in a city in Brazil (Cascavel – Paraná, from the industrial segment distributed in several areas, selected by the non-probabilistic method, considering the samples by convenience. The research results showed that the respondents connect with information technology through social networks, applications and technological devices in a normal deliberated way. Literature has showed that Brazil is the second most connected country in social networks, which shows that managers tend to increase the use of information technology over time. We concluded that when managers use those technological tools, are online frequently, to fulfill their entrepreneurial functions, they remain attentive to everything that is happening around them and globally.

  2. Connected correlators in quantum gravity

    International Nuclear Information System (INIS)

    We discuss the concept of connected, reparameterization invariant matter correlators in quantum gravity. We analyze the effect of discretization in two solvable cases: branched polymers and two-dimensional simplicial gravity. In both cases the naively defined connected correlators for a fixed volume display an anomalous behavior, which could be interpreted as a long-range order. We suggest that this is in fact only a highly non-trivial finite-size effect and propose an improved definition of the connected correlator, which reduces the effect. Using this definition we illustrate the appearance of a long-range spin order in the Ising model on a two-dimensional random lattice in an external magnetic field H, when H to 0 and β=βC. (author)

  3. Pleura: In connective tissue diseases

    Directory of Open Access Journals (Sweden)

    Kaushik Saha

    2016-01-01

    Full Text Available Connective tissue diseases (CTDs (or collagen vascular diseases represent a heterogeneous group of immunologically mediated disorders that affects many organs of the body including pleura. Frequency, presentation, and prognosis of pleural involvement depend on the underlying CTD. Connective tissue disorders may be heritable such as Marfan syndrome, Ehlers-Danlos syndrome, and osteogenesis imperfecta; and autoimmune such as systemic lupus erythematosus (SLE, rheumatoid arthritis (RA, systemic sclerosis, mixed connective tissue disease (MCTD, Sjögren's syndrome (SS, dermatomyositis (DM, and polymyositis (PM. The subject of this review is to describe the variety of pleural disorders observed in the most frequent types of CTD: SLE, RA, scleroderma, SS, DM, PM, and MCTD.

  4. Rapid plasticity of binocular connections in developing monkey visual cortex (V1)

    OpenAIRE

    Zhang, Bin; Bi, Hua; Sakai, Eiichi; Maruko, Ichiro; Zheng, Jianghe; Smith, Earl L.; Chino, Yuzo M.

    2005-01-01

    The basic sets of cortical connections are present at birth in the primate visual system. The maintenance and refinement of these innate connections are highly dependent on normal visual experience, and prolonged exposure to binocularly uncorrelated signals early in life severely disrupts the normal development of binocular functions. However, very little is known about how rapidly these changes in the functional organization of primate visual cortex emerge or what are the sequence and the na...

  5. Quaternions and Rotation Sequences

    OpenAIRE

    Kuipers, Jack B.

    2000-01-01

    In this paper we introduce and define the quaternion; we give a brief introduction to its properties and algebra, and we show (what appears to be) its primary application—the quaternion rotation operator. The quaternion rotation operator competes with the conventional matrix rotation operator in a variety of rotation sequences.

  6. THE RHIC SEQUENCER

    International Nuclear Information System (INIS)

    The Relativistic Heavy Ion Collider (RHIC) has a high level asynchronous time-line driven by a controlling program called the ''Sequencer''. Most high-level magnet and beam related issues are orchestrated by this system. The system also plays an important task in coordinated data acquisition and saving. We present the program, operator interface, operational impact and experience

  7. Instruction sequence processing operators

    NARCIS (Netherlands)

    J.A. Bergstra; C.A. Middelburg

    2009-01-01

    This paper concerns instruction sequences whose execution involves the processing of instructions by an execution environment that offers a family of services and may yield a Boolean value at termination. We introduce a composition operator for families of services and three operators that have a di

  8. THE RHIC SEQUENCER.

    Energy Technology Data Exchange (ETDEWEB)

    VAN ZEIJTS,J.; DOTTAVIO,T.; FRAK,B.; MICHNOFF,R.

    2001-06-18

    The Relativistic Heavy Ion Collider (RHIC) has a high level asynchronous time-line driven by a controlling program called the ''Sequencer''. Most high-level magnet and beam related issues are orchestrated by this system. The system also plays an important task in coordinated data acquisition and saving. We present the program, operator interface, operational impact and experience.

  9. A Sequence of Cylinders

    Science.gov (United States)

    Johnson, Erica

    2006-01-01

    Hoping to develop in her students an understanding of mathematics as a way of thinking more than a way of doing, the author of this article describes how her students worked on a spatial reasoning problem stemming from an iteratively constructed sequence of cylinders. She presents an activity of making cylinders out of paper models, and for every…

  10. 46 CFR 98.30-27 - Connections.

    Science.gov (United States)

    2010-10-01

    ... operations unless it is— (1) A bolted or full threaded connection; or (2) A quick-connect coupling accepted.... (a) Each person who makes a connection for a transfer operation shall— (1) Use suitable material in... less than four bolts in each temporary connection utilizing an American National Standards...

  11. Liaison concatenation – A method to obtain feasible assembly sequences from 3D-CAD product

    Indian Academy of Sciences (India)

    M V A Raju Bahubalendruni; Bibhuti Bhusan Biswal

    2016-01-01

    Selection of optimized assembly sequence from the available feasible assembly sequences is significantly essential to achieve cost-effective manufacturing process. To achieve this, at the outset, generation of feasible assembly sequences with topological, geometrical, precedence and stability conditions should be generated. The increase of part count in a product results huge number of assembly sequences, the Liaison matrix/Liaison graph generated based on the connections between the assembly components eliminates nonpossible assembly sequences at the initial phase. There exist methods namely cut-set method to eliminate the non-possible assembly sequences using liaison graph. In this paper a new approach to eliminate the non-possible assembly sequences based on liaisons is described and the correctness of the methodology is illustrated with an example. The methodology to obtain the feasible assembly sequences is also briefly described and presented. An algorithm to interface with the CAD environment is described briefly.

  12. Connecting musicological tools with Europeana

    NARCIS (Netherlands)

    van Berchum, M.

    2015-01-01

    Within the Europeana Cloud project (see http://pro.europeana.eu/web/europeana- cloud) small research groups are engaged in the development of new research tools, connected to the content present in Europeana. In 2014 a group of musicologists working on early music subjects was invited to participate

  13. Grouted Connections with Shear Keys

    DEFF Research Database (Denmark)

    Pedersen, Ronnie; Jørgensen, M. B.; Damkilde, Lars;

    2012-01-01

    This paper presents a finite element model in the software package ABAQUS in which a reliable analysis of grouted pile-to-sleeve connections with shear keys is the particular purpose. The model is calibrated to experimental results and a consistent set of input parameters is estimated so that...... different structural problems can be reproduced successfully....

  14. Gigabit Wireless for Network Connectivity

    Science.gov (United States)

    Schoedel, Eric

    2009-01-01

    Uninterrupted, high-bandwidth network connectivity is crucial for higher education. Colleges and universities increasingly adopt gigabit wireless solutions because of their fiber-equivalent performance, quick implementation, and significant return on investment. For just those reasons, Rush University Medical Center switched from free space optics…

  15. Starting-up sequence of the AWEC-60 wind turbine

    International Nuclear Information System (INIS)

    One of the most critical status of the wind turbines operation is the starting-up sequence and the connection to the grid, due to the actuating loads that could be several times the loads during operation at rated conditions. Due to this fact, the control strategy is very important during the starting-up sequence in order to minimize the loads on the machine. For this purpose it is necessary to analyze the behaviour of the wind turbine during that sequence in different wind conditions and machine conditions. This report shows the graphic information about fifty starting-up sequences of the AWEC-60 wind turbine of 60 m. diameter and 1200 kW of rated power, recorded in April 1991 and cut-out wind speed. (author)

  16. SWISS-PROT: connecting biomolecular knowledge via a protein database.

    Science.gov (United States)

    Gasteiger, E; Jung, E; Bairoch, A

    2001-07-01

    With the explosive growth of biological data, the development of new means of data storage was needed. More and more often biological information is no longer published in the conventional way via a publication in a scientific journal, but only deposited into a database. In the last two decades these databases have become essential tools for researchers in biological sciences. Biological databases can be classified according to the type of information they contain. There are basically three types of sequence-related databases (nucleic acid sequences, protein sequences and protein tertiary structures) as well as various specialized data collections. It is important to provide the users of biomolecular databases with a degree of integration between these databases as by nature all of these databases are connected in a scientific sense and each one of them is an important piece to biological complexity. In this review we will highlight our effort in connecting biological information as demonstrated in the SWISS-PROT protein database. PMID:11488411

  17. Pengurangan Arus Harmonisa Urutan Nol Dengan Zero Sequence Blocking Transformer Dan Transformator Zig-Zag Yang Menggunakan Tiga Buah Transformator Satu Fasa

    OpenAIRE

    Pane, Zulkarnaen

    2014-01-01

    The zero-sequence harmonics current or the third sequence of harmonic current generated by non-linear loads potentially cause power quality problems on 4-wires 3-phase distributed systems. This research exposes an harmonic current suppression method by utilizing a zero sequence blocking transformer and a zig-zag transformer which employ three single-phase transformers. The zero sequence blocking transformer is connected serially to the power source to generate a high zero sequence impedance, ...

  18. Implicit sequence learning in people with Parkinson’s disease

    Directory of Open Access Journals (Sweden)

    Katherine R Gamble

    2014-08-01

    Full Text Available Implicit sequence learning involves learning about dependencies in sequences of events without intent to learn or awareness of what has been learned. Sequence learning is related to striatal dopamine levels, striatal activation, and integrity of white matter connections. People with Parkinson’s disease (PD have degeneration of dopamine-producing neurons, leading to dopamine deficiency and therefore striatal deficits, and they have difficulties with sequencing, including complex language comprehension and postural stability. Most research on implicit sequence learning in PD has used motor-based tasks. However, because PD presents with motor deficits, it is difficult to assess whether learning itself is impaired in these tasks. The present study used an implicit sequence learning task with a reduced motor component, the Triplets Learning Task (TLT. People with PD and age- and education-matched healthy older adults completed three sessions (each consisting of 10 blocks of 50 trials of the TLT. Results revealed that the PD group was able to learn the sequence, however, when learning was examined using a Half Blocks analysis (Nemeth et al., 2013, which compared learning in the 1st 25/50 trials of all blocks to that in the 2nd 25/50 trials, the PD group showed significantly less learning than Controls in the 2nd Half Blocks, but not in the 1st. Nemeth et al. hypothesized that the 1st Half Blocks involve recall and reactivation of the sequence learned, thus reflecting hippocampal-dependent learning, while the 2nd Half Blocks involve proceduralized behavior of learned sequences, reflecting striatal-based learning. The present results suggest that the PD group had intact hippocampal-dependent implicit sequence learning, but impaired striatal-dependent learning. Thus, sequencing deficits in PD are likely due to striatal impairments, but other brain systems, such as the hippocampus, may be able to partially compensate for striatal decline to improve

  19. Connecting leadership and learning: Do versatile learners make connective leaders?

    OpenAIRE

    Robinson, Jill L.

    2016-01-01

    Recent failures in leadership, suggest that creating better-quality leadership development programs is critical. In moving from theory to practice, this paper examined the relationship between learning style and leadership style which may enable us to move away from one-size-fits-all leadership development programs. Utilizing Kolb’s Experiential Learning Model and Connective Leadership theory, approximately 3600 college students were analyzed to discover whether versatility in learning styles...

  20. Properties of Semijoin Sequences

    Institute of Scientific and Technical Information of China (English)

    BengC.Ooi; B.Srinivasan

    1989-01-01

    The problem of finding optimum semijoin sequ4ence of an arbitrary query under linear cost function for the transmission cost is NP.hard.Hence heuristic algorithms with desirable properties are explored.In this paper four properties of semijoin programs for distributed query processing are identified,The use of these properties in constructing semijoin sequence is justified.An existing algorithm is modified incorporating these properties.Empirical comparison with existing algorithms shows the superiority of the proposed algorithm.

  1. Learning academic formulaic sequences

    OpenAIRE

    Peters, Elke; Pauwels, Paul

    2015-01-01

    This paper reports on a classroom-based study that explored the effect of explicit, vocabulary-focused instruction on English as a Foreign Language (EFL) students’ recognition, cued output and spontaneous use of academic formulaic sequences (FS). In addition, the study aimed to shed some light on which type of classroom activity might be most beneficial. Data were collected among second-year EFL business students (L1 = Dutch) in a classroom-based experiment during students’ regular English cl...

  2. Sequence Classification: 885394 [

    Lifescience Database Archive (English)

    Full Text Available 703); The expression pattern of this gene is described in PMID:12000842; possible frameshift detected when compare...Non-TMB TMH Non-TMB Non-TMB Non-TMB Non-TMB >gi|23619146|ref|NP_705108.1| Slight difference exist when compa...red to the published sequence of EBL-1 from Dd2 strain of P. falciparum (PMID:10613

  3. Oscillatory Nonautonomous Lucas Sequences

    Directory of Open Access Journals (Sweden)

    José M. Ferreira

    2010-01-01

    Full Text Available The oscillatory behavior of the solutions of the second-order linear nonautonomous equation x(n+1=a(nx(n−b(nx(n−1,  n∈ℕ0, where a,b:ℕ0→ℝ, is studied. Under the assumption that the sequence b(n dominates somehow a(n, the amplitude of the oscillations and the asymptotic behavior of its solutions are also analized.

  4. ConnectED: President Obama's Plan for Connecting All Schools to the Digital Age

    Science.gov (United States)

    The White House, 2013

    2013-01-01

    Driven by new digital technologies, the future of learning is increasingly interactive, individualized, and full of real-world experiences and information. Unfortunately, the average school has about the same connectivity as the average American home, but serves 200 times as many users, and fewer than 20 percent of educators say their school's…

  5. Information Theory of DNA Sequencing

    CERN Document Server

    Motahari, Abolfazl; Tse, David

    2012-01-01

    DNA sequencing is the basic workhorse of modern day biology and medicine. Shotgun sequencing is the dominant technique used: many randomly located short fragments called reads are extracted from the DNA sequence, and these reads are assembled to reconstruct the original sequence. By drawing an analogy between the DNA sequencing problem and the classic communication problem, we define an information theoretic notion of sequencing capacity. This is the maximum number of DNA base pairs that can be resolved reliably per read, and provides a fundamental limit to the performance that can be achieved by any assembly algorithm. We compute the sequencing capacity explicitly for a simple statistical model of the DNA sequence and the read process. Using this framework, we also study the impact of noise in the read process on the sequencing capacity.

  6. Image sequence analysis

    CERN Document Server

    1981-01-01

    The processing of image sequences has a broad spectrum of important applica­ tions including target tracking, robot navigation, bandwidth compression of TV conferencing video signals, studying the motion of biological cells using microcinematography, cloud tracking, and highway traffic monitoring. Image sequence processing involves a large amount of data. However, because of the progress in computer, LSI, and VLSI technologies, we have now reached a stage when many useful processing tasks can be done in a reasonable amount of time. As a result, research and development activities in image sequence analysis have recently been growing at a rapid pace. An IEEE Computer Society Workshop on Computer Analysis of Time-Varying Imagery was held in Philadelphia, April 5-6, 1979. A related special issue of the IEEE Transactions on Pattern Anal­ ysis and Machine Intelligence was published in November 1980. The IEEE Com­ puter magazine has also published a special issue on the subject in 1981. The purpose of this book ...

  7. Optimal connecting elements allocation in linear consecutively-connected systems with phased mission and common cause failures

    International Nuclear Information System (INIS)

    This paper considers linear consecutively-connected systems (LCCSs) subject to multiple phases of mission and common cause failures. Many real-world systems such as communication networks and flow transmission systems can be modeled as a phased-mission LCCS (PM-LCCS) that consists of linearly ordered nodes with some of them containing one or multiple connection elements (CEs). Each of these CEs provides a connection between its host node and a certain number of downstream nodes depending on the connection range of the CE; they work together to provide path connectivity between a pair of source and destination nodes specified in the transmission task. Common cause failures (CCFs) can occur in a node and destroy all CEs located in that node. The system fails if the source and destination nodes are disconnected. The considered PM-LCCS must perform a sequence of transmission tasks over multiple non-overlapping phases that can be subjected to different stresses and environment conditions, causing dynamics in elements failure behavior. During each phase the system may be required to provide continuous connection along a different path of nodes, and common nodes may appear in different paths causing statistical dependence across the phases. In this paper, the problem of optimal allocation of CEs to nodes in PM-LCCSs with CCFs is formulated and solved for maximizing the overall mission reliability. The proposed methodology includes a recursive reliability evaluation algorithm for PM-LCCSs which takes into account CCFs, phase dependence as well as dynamics in path configuration and elements failure behaviors. A genetic algorithm is then adapted for solving the formulated optimal allocation problem for PM-LCCSs with CCFs. The proposed approach is illustrated using examples. - Highlights: • Multi-phase linear consecutively-connected systems with CCF are studied. • Optimal connecting element allocation problem is solved. • The benefit of locating several connecting

  8. Neural network connectivity and response latency modelled by stochastic processes

    DEFF Research Database (Denmark)

    Tamborrino, Massimiliano

    is connected to thousands of other neurons. The rst question is: how to model neural networks through stochastic processes? A multivariate Ornstein-Uhlenbeck process, obtained as a diffusion approximation of a jump process, is the proposed answer. Obviously, dependencies between neurons imply dependencies...... between their spike times. Therefore, the second question is: how to detect neural network connectivity from simultaneously recorded spike trains? Answering this question corresponds to investigate the joint distribution of sequences of rst passage times. A non-parametric method based on copulas...... generation of pikes. When a stimulus is applied to the network, the spontaneous rings may prevail and hamper detection of the effects of the stimulus. Therefore, the spontaneous rings cannot be ignored and the response latency has to be detected on top of a background signal. Everything becomes more dicult...

  9. Psychoacoustic Properties of Fibonacci Sequences

    Directory of Open Access Journals (Sweden)

    J. Sokoll

    2008-01-01

    Full Text Available 1202, Fibonacci set up one of the most interesting sequences in number theory. This sequence can be represented by so-called Fibonacci Numbers, and by a binary sequence of zeros and ones. If such a binary Fibonacci Sequence is played back as an audio file, a very dissonant sound results. This is caused by the “almost-periodic”, “self-similar” property of the binary sequence. The ratio of zeros and ones converges to the golden ratio, as do the primary and secondary spectral components intheir frequencies and amplitudes. These Fibonacci Sequences will be characterized using listening tests and psychoacoustic analyses. 

  10. Allele Re-sequencing Technologies

    DEFF Research Database (Denmark)

    Byrne, Stephen; Farrell, Jacqueline Danielle; Asp, Torben

    The development of next-generation sequencing technologies has made sequencing an affordable approach for detection of genetic variations associated with various traits. However, the cost of whole genome re-sequencing still remains too high to be feasible for many plant species with large and...... complex genomes. Recent developments in strategies for target-enrichment, transcriptome re-sequencing, and partial genome re-sequencing allows for enrichment for regions of interest at a scale that is matched to the throughput of next-generation sequencing platforms, and has emerged as a promising...

  11. Sequence Maneuverer: tool for sequence extraction from genomes

    OpenAIRE

    Yasmin, Tayyaba; Rehman, Inayat Ur; Ansari, Adnan Ahmad; liaqat, Khurrum; Khan, Muhammad Irfan

    2012-01-01

    The availability of genomic sequences of many organisms has opened new challenges in many aspects particularly in terms of genome analysis. Sequence extraction is a vital step and many tools have been developed to solve this issue. These tools are available publically but have limitations with reference to the sequence extraction, length of the sequence to be extracted, organism specificity and lack of user friendly interface. We have developed a java based software package having three modul...

  12. Connection between Transmission Quality Parametrs

    Directory of Open Access Journals (Sweden)

    Andrej Sulovec

    2003-01-01

    Full Text Available Errors occuring in digital transmission are the major source of degradation in that they affect voice services in terms of distortion of voice, and data type services in terms of lost or inaccurate information or reduces throughput. Therefore International Telecommunication Union ITU-T defined some objectives that enable to express the measure of digital transmission quality. It is often necessary to know the connection between these parameters.

  13. Connection between Transmission Quality Parametrs

    OpenAIRE

    Andrej Sulovec

    2003-01-01

    Errors occuring in digital transmission are the major source of degradation in that they affect voice services in terms of distortion of voice, and data type services in terms of lost or inaccurate information or reduces throughput. Therefore International Telecommunication Union ITU-T defined some objectives that enable to express the measure of digital transmission quality. It is often necessary to know the connection between these parameters.

  14. The Galaxy Dark Matter Connection

    OpenAIRE

    Bosch, Frank C. van den; Yang, Xiaohu; Mo, H. J.

    2004-01-01

    What galaxy lives in what halo? The answer to this simple question holds important information regarding galaxy formation and evolution. We describe a new statistical technique to link galaxies to their dark matter haloes, or light to mass, using the clustering properties of galaxies as function of their luminosity. The galaxy-dark matter connection thus established, and parameterized through the conditional luminosity function, indicates the presence of two characteristic scales in galaxy fo...

  15. MANAGERS CONNECTED THROUGH INFORMATION TECHNOLOGY

    OpenAIRE

    Osmarina Pedro Garcia Garcia; Claudio Mioranza; Edison Luiz Leismann

    2015-01-01

    This study had as its central objective to ascertain how managers connect with information technology. The methodology applied was an exploratory research, through a structured questionnaire survey based on qualitative and quantitative approach. The study interviewed eighteen managers in a city in Brazil (Cascavel – Paraná), from the industrial segment distributed in several areas, selected by the non-probabilistic method, considering the samples by convenience. The research results showed...

  16. Connecting Remote Clusters with ATM

    Energy Technology Data Exchange (ETDEWEB)

    Hu, T.C.; Wyckoff, P.S.

    1998-10-01

    Sandia's entry into utilizing clusters of networked workstations is called Computational Plant or CPlant for short. The design of CPlant uses Ethernet to boot the individual nodes, Myrinet to communicate within a node cluster, and ATM to connect between remote clusters. This SAND document covers the work done to enable the use of ATM on the CPlant nodes in the Fall of 1997.

  17. Critical Connections: Health and Academics

    OpenAIRE

    Michael, Shannon L; Merlo, Caitlin L.; Basch, Charles E.; Wentzel, Kathryn R; Wechsler, Howell

    2015-01-01

    BACKGROUND While it is a national priority to support the health and education of students, these sectors must better align, integrate, and collaborate to achieve this priority. This article summarizes the literature on the connection between health and academic achievement using the Whole School, Whole Community, and Whole Child (WSCC) framework as a way to address health-related barriers to learning. METHODS A literature review was conducted on the association between student health and aca...

  18. Nonlinear connections and spinor geometry

    Directory of Open Access Journals (Sweden)

    Nadejda A. Vicol

    2004-05-01

    Full Text Available We present an introduction to the geometry of higher-order vector and covector bundles (including higher-order generalizations of the Finsler geometry and Kaluza-Klein gravity and review the basic results on Clifford and spinor structures on spaces with generic local anisotropy modeled by anholonomic frames with associated nonlinear connection structures. We emphasize strong arguments for application of Finsler-like geometries in modern string and gravity theory, noncommutative geometry and noncommutative field theory, and gravity.

  19. Connected Me - Proof of Concept

    OpenAIRE

    Vajravelu, Dilip Kumar

    2013-01-01

    Connected Me is a Human Body Communication (HBC) system, which is used fortransferring data through human body. The working principle is based on theorycalled Body Coupled Communication (BCC), which uses electrostatic couplingfor transferring data between device and human body. Capacitance between bodyand electrode acts as an electrical interface between devices. BCC has become aprominent research area in the field of Personal Area Network (PAN), introducedby Zimmerman in 1995. Until now ther...

  20. Ecovillage as an information connection

    OpenAIRE

    Vorob'ev, V. V.; Koneva, K. A.

    2015-01-01

    Problem Statement. Publications dedicated to the ecovillages consider questions that are called ecological. But in fact such questions as the use of sustainable building materials, reducing the energy needs of buildings and others don’t represent ecological ones. Theoretical principles of ecological environment proposed by researchers for general plans of settlements also don’t show the interaction with the natural network of connections. Meanwhile ecology is first of all the science of the r...

  1. Performance evaluations of demountable electrical connections

    International Nuclear Information System (INIS)

    Electrical conductors operating in cryogenic environments can require demountable connections along their lengths. The connections must have low resistance and high reliability and should allow ready assembly and disassembly. In this work, the performance of two types of connections has been evaluated. The first connection type is a clamped surface-to-surface joint. The second connection type is a screwed joint that incorporates male and female machine-thread components. The connections for copper conductors have been evaluated experimentally at 77 K. Experimental variables included thread surface treatment and assembly methods. The results of the evaluations are presented

  2. Pseudorandom Binary Sequences Generated by Sequences (n.alpha)

    Czech Academy of Sciences Publication Activity Database

    Porubský, Štefan

    Marseille: CIRM, 2008, s. 1-40. [International Conference on Uniform Distribution. Marseille, 21.01.2008-25.01.2008)] Institutional research plan: CEZ:AV0Z10300504 Keywords : binary sequence * multiples of of an irrational number * pseudorandom sequence * distribution properties of sequences Subject RIV: BA - General Mathematics

  3. HIV protein sequence hotspots for crosstalk with host hub proteins.

    Directory of Open Access Journals (Sweden)

    Mahdi Sarmady

    Full Text Available HIV proteins target host hub proteins for transient binding interactions. The presence of viral proteins in the infected cell results in out-competition of host proteins in their interaction with hub proteins, drastically affecting cell physiology. Functional genomics and interactome datasets can be used to quantify the sequence hotspots on the HIV proteome mediating interactions with host hub proteins. In this study, we used the HIV and human interactome databases to identify HIV targeted host hub proteins and their host binding partners (H2. We developed a high throughput computational procedure utilizing motif discovery algorithms on sets of protein sequences, including sequences of HIV and H2 proteins. We identified as HIV sequence hotspots those linear motifs that are highly conserved on HIV sequences and at the same time have a statistically enriched presence on the sequences of H2 proteins. The HIV protein motifs discovered in this study are expressed by subsets of H2 host proteins potentially outcompeted by HIV proteins. A large subset of these motifs is involved in cleavage, nuclear localization, phosphorylation, and transcription factor binding events. Many such motifs are clustered on an HIV sequence in the form of hotspots. The sequential positions of these hotspots are consistent with the curated literature on phenotype altering residue mutations, as well as with existing binding site data. The hotspot map produced in this study is the first global portrayal of HIV motifs involved in altering the host protein network at highly connected hub nodes.

  4. NG6: Integrated next generation sequencing storage and processing environment

    Directory of Open Access Journals (Sweden)

    Mariette Jérôme

    2012-09-01

    Full Text Available Abstract Background Next generation sequencing platforms are now well implanted in sequencing centres and some laboratories. Upcoming smaller scale machines such as the 454 junior from Roche or the MiSeq from Illumina will increase the number of laboratories hosting a sequencer. In such a context, it is important to provide these teams with an easily manageable environment to store and process the produced reads. Results We describe a user-friendly information system able to manage large sets of sequencing data. It includes, on one hand, a workflow environment already containing pipelines adapted to different input formats (sff, fasta, fastq and qseq, different sequencers (Roche 454, Illumina HiSeq and various analyses (quality control, assembly, alignment, diversity studies,… and, on the other hand, a secured web site giving access to the results. The connected user will be able to download raw and processed data and browse through the analysis result statistics. The provided workflows can easily be modified or extended and new ones can be added. Ergatis is used as a workflow building, running and monitoring system. The analyses can be run locally or in a cluster environment using Sun Grid Engine. Conclusions NG6 is a complete information system designed to answer the needs of a sequencing platform. It provides a user-friendly interface to process, store and download high-throughput sequencing data.

  5. Sequence repeats and protein structure

    Science.gov (United States)

    Hoang, Trinh X.; Trovato, Antonio; Seno, Flavio; Banavar, Jayanth R.; Maritan, Amos

    2012-11-01

    Repeats are frequently found in known protein sequences. The level of sequence conservation in tandem repeats correlates with their propensities to be intrinsically disordered. We employ a coarse-grained model of a protein with a two-letter amino acid alphabet, hydrophobic (H) and polar (P), to examine the sequence-structure relationship in the realm of repeated sequences. A fraction of repeated sequences comprises a distinct class of bad folders, whose folding temperatures are much lower than those of random sequences. Imperfection in sequence repetition improves the folding properties of the bad folders while deteriorating those of the good folders. Our results may explain why nature has utilized repeated sequences for their versatility and especially to design functional proteins that are intrinsically unstructured at physiological temperatures.

  6. Recent advances in nanopore sequencing

    OpenAIRE

    Maitra, Raj D.; Kim, Jungsuk; Dunbar, William B.

    2012-01-01

    The prospect of nanopores as a next-generation sequencing (NGS) platform has been a topic of growing interest and considerable government-sponsored research for more than a decade. Oxford Nanopore Technologies recently announced the first commercial nanopore sequencing devices, to be made available by the end of 2012, while other companies (Life, Roche, IBM) are also pursuing nanopore sequencing approaches. In this paper, the state of the art in nanopore sequencing is reviewed, focusing on th...

  7. Region segmentation along image sequence

    International Nuclear Information System (INIS)

    A method to extract regions in sequence of images is proposed. Regions are not matched from one image to the following one. The result of a region segmentation is used as an initialization to segment the following and image to track the region along the sequence. The image sequence is exploited as a spatio-temporal event. (authors). 12 refs., 8 figs

  8. MOHCS: Towards Mining Overlapping Highly Connected Subgraphs

    CERN Document Server

    Lin, Xiahong; Chen, Kefei; Chiu, David K Y

    2008-01-01

    Many networks in real-life typically contain parts in which some nodes are more highly connected to each other than the other nodes of the network. The collection of such nodes are usually called clusters, communities, cohesive groups or modules. In graph terminology, it is called highly connected graph. In this paper, we first prove some properties related to highly connected graph. Based on these properties, we then redefine the highly connected subgraph which results in an algorithm that determines whether a given graph is highly connected in linear time. Then we present a computationally efficient algorithm, called MOHCS, for mining overlapping highly connected subgraphs. We have evaluated experimentally the performance of MOHCS using real and synthetic data sets from computer-generated graph and yeast protein network. Our results show that MOHCS is effective and reliable in finding overlapping highly connected subgraphs. Keywords-component; Highly connected subgraph, clustering algorithms, minimum cut, m...

  9. MedlinePlus Connect: Web Application

    Science.gov (United States)

    ... MedlinePlus Connect → Web Application URL of this page: https://www.nlm.nih.gov/medlineplus/connect/application.html ... the base URL for the Web application is: https://apps.nlm.nih.gov/medlineplus/services/mpconnect.cfm ...

  10. MedlinePlus Connect: Web Service

    Science.gov (United States)

    ... MedlinePlus Connect → Web Service URL of this page: https://www.nlm.nih.gov/medlineplus/connect/service.html ... the base URL for the Web service is: https://apps.nlm.nih.gov/medlineplus/services/mpconnect_service. ...

  11. MedlinePlus Connect: Email List

    Science.gov (United States)

    ... nih.gov/medlineplus/connect/emaillist.html MedlinePlus Connect: Email List To use the sharing features on this ... developments and exchange ideas with your colleagues. This email list will be useful for health IT developers ...

  12. Connecting Related Rates and Differential Equations

    Science.gov (United States)

    Brandt, Keith

    2012-01-01

    This article points out a simple connection between related rates and differential equations. The connection can be used for in-class examples or homework exercises, and it is accessible to students who are familiar with separation of variables.

  13. Sequence Maneuverer: tool for sequence extraction from genomes

    Science.gov (United States)

    Yasmin, Tayyaba; Rehman, Inayat Ur; Ansari, Adnan Ahmad; liaqat, Khurrum; khan, Muhammad Irfan

    2012-01-01

    The availability of genomic sequences of many organisms has opened new challenges in many aspects particularly in terms of genome analysis. Sequence extraction is a vital step and many tools have been developed to solve this issue. These tools are available publically but have limitations with reference to the sequence extraction, length of the sequence to be extracted, organism specificity and lack of user friendly interface. We have developed a java based software package having three modules which can be used independently or sequentially. The tool efficiently extracts sequences from large datasets with few simple steps. It can efficiently extract multiple sequences of any desired length from a genome of any organism. The results are crosschecked by published data. Availability URL 1: http://ww3.comsats.edu.pk/bio/ResearchProjects.aspx URL 2: http://ww3.comsats.edu.pk/bio/SequenceManeuverer.aspx PMID:23275734

  14. Rapid Polymer Sequencer

    Science.gov (United States)

    Stolc, Viktor (Inventor); Brock, Matthew W (Inventor)

    2013-01-01

    Method and system for rapid and accurate determination of each of a sequence of unknown polymer components, such as nucleic acid components. A self-assembling monolayer of a selected substance is optionally provided on an interior surface of a pipette tip, and the interior surface is immersed in a selected liquid. A selected electrical field is impressed in a longitudinal direction, or in a transverse direction, in the tip region, a polymer sequence is passed through the tip region, and a change in an electrical current signal is measured as each polymer component passes through the tip region. Each of the measured changes in electrical current signals is compared with a database of reference electrical change signals, with each reference signal corresponding to an identified polymer component, to identify the unknown polymer component with a reference polymer component. The nanopore preferably has a pore inner diameter of no more than about 40 nm and is prepared by heating and pulling a very small section of a glass tubing.

  15. Strategy of Concurrent Optimization for an Assembly Sequence

    Institute of Scientific and Technical Information of China (English)

    YANG Bo; LIU Lu-ning; ZE Xiang-bo

    2005-01-01

    An effective constraint release based approach to realize concurrent optimization for an assembly sequence is proposed. To quantify the measurement of assembly efficiency, a mathematical model of concurrency evaluation index was put forward at first, and then a technology to quantify assembly constraints was developed by application of some fuzzy logic algorithms. In the process of concurrent optimization of the assembly sequence, two kinds of constraints were involved. One was self-constraints of components, which was used to evaluate the assemble capability of components under the condition of full-freedom. Another was an assembly constraint between components represented by geometric constraints between points, lines and planes under physical restriction conditions. The concept of connection strength degree (CSD) was introduced as one efficient indicator and the value of it was evaluated by the intersection of the two constraints mentioned above. The equivalent constraints describing the connection weights between components were realized by a well designed constraints reduction, and then the connection weights based complete assembly liaison graph was applied to release virtual connections between components. Under a given threshold value, a decomposition and reconstituting strategy for the graph with the focus on high assembly concurrency was used to realize an optimized assembly concurrency evaluation index. Finally, the availability of the approach was illustrated in an example to optimize the assembly of a shift pump.

  16. Brain connectivity in autism spectrum disorder

    OpenAIRE

    Mohammad-Rezazadeh, I; Frohlich, J; Loo, SK; Jeste, SS

    2016-01-01

    Many studies have reported that individuals with autism spectrum disorder (ASD) have different brain connectivity patterns compared with typically developing individuals. However, the results of more recent studies do not unanimously support the traditional view in which individuals with ASD have lower connectivity between distant brain regions and increased connectivity within local brain regions. In this review, we discuss different methods for measuring brain connectivity and how the use o...

  17. Fatigue Assessment of Threaded Riser Connections

    OpenAIRE

    Braun, Moritz,

    2014-01-01

    Threaded connections as found in applications like rigid riser, drillstrings, and workover riser are manufactured with sharp notches. Subjected to cyclic loading, those notches lead to high stress concentrations, which increase the risk of fatigue crack initiation significantly. A common connection type that has been the basis for extensive studies is the API Line Pipe connection. The basic API thread type consists of truncated triangular threads. In order to tighten the connection the male a...

  18. Impact of connectivity on sustainable development

    OpenAIRE

    Ylä-Soininmäki, Mea

    2016-01-01

    Connectivity has changed the world for good, and its impact will only increase in the future. Connecting people, and due to Internet of Things (IoT), connecting devices have created and will continue to create various opportunities for individuals, industries and the society. This has a major impact on sustainable development, and it provides solutions that may help improve the economic, social and environmental fields. In the economic field, connectivity and access to the Internet have e...

  19. Destination Sequenced – Distance Vector Algorithm

    Directory of Open Access Journals (Sweden)

    Anto Ramya. S. I

    2015-11-01

    Full Text Available Mobile Ad Hoc Network (MANET is an infrastructure where nodes communicate without any central administration. Nodes are connected through wireless channels and can use multiple hops to exchange data. Routing protocols are needed for communication in such networks. Each node acts both as a router and host concurrently, which can move out or join the network freely. The instantly created network does not have any base infrastructure as used in conventional networks, but it is compatible with conventional networks. This paper discusses about the Destination – Sequenced Distance Vector (DSDV which is a modification of the conventional Bellman-Ford routing algorithm. It addresses the drawbacks related to the poor looping properties of Routing Information Protocol (RIP in the face of broken links. The modification adapted in DSDV makes it more suitable routing protocol for MANETs. This paper discusses about the DSDV protocol and analyses the properties of DSDV when it is used for MANET routing.

  20. Perfusion deficits and functional connectivity alterations in patients with post-traumatic stress disorder

    Science.gov (United States)

    Liu, Yang; Li, Baojuan; Zhang, Xi; Zhang, Linchuan; Li, Liang; Lu, Hongbing

    2016-03-01

    To explore the alteration in cerebral blood flow (CBF) and functional connectivity between survivors with recent onset post-traumatic stress disorder (PTSD) and without PTSD, survived from the same coal mine flood disaster. In this study, a processing pipeline using arterial spin labeling (ASL) sequence was proposed. Considering low spatial resolution of ASL sequence, a linear regression method was firstly used to correct the partial volume (PV) effect for better CBF estimation. Then the alterations of CBF between two groups were analyzed using both uncorrected and PV-corrected CBF maps. Based on altered CBF regions detected from the CBF analysis as seed regions, the functional connectivity abnormities in PTSD patients was investigated. The CBF analysis using PV-corrected maps indicates CBF deficits in the bilateral frontal lobe, right superior frontal gyrus and right corpus callosum of PTSD patients, while only right corpus callosum was identified in uncorrected CBF analysis. Furthermore, the regional CBF of the right superior frontal gyrus exhibits significantly negative correlation with the symptom severity in PTSD patients. The resting-state functional connectivity indicates increased connectivity between left frontal lobe and right parietal lobe. These results indicate that PV-corrected CBF exhibits more subtle perfusion changes and may benefit further perfusion and connectivity analysis. The symptom-specific perfusion deficits and aberrant connectivity in above memory-related regions may be putative biomarkers for recent onset PTSD induced by a single prolonged trauma exposure and help predict the severity of PTSD.

  1. 46 CFR 64.33 - Pipe connection.

    Science.gov (United States)

    2010-10-01

    ... 46 Shipping 2 2010-10-01 2010-10-01 false Pipe connection. 64.33 Section 64.33 Shipping COAST GUARD, DEPARTMENT OF HOMELAND SECURITY (CONTINUED) MARINE ENGINEERING MARINE PORTABLE TANKS AND CARGO HANDLING SYSTEMS Standards for an MPT § 64.33 Pipe connection. Each pipe connection that is not a...

  2. Formal Connections for families of Star Products

    DEFF Research Database (Denmark)

    Ellegaard Andersen, Jørgen; Masulli, Paolo; Schaetz, Florian

    We define the notion of a formal connection for a smooth family of star products with fixed underlying symplectic structure. Such a formal connection allows one to relate star products at different points in the family. This generalizes the formal Hitchin connection introduced by the first author...

  3. MedlinePlus Connect: Web Service

    Science.gov (United States)

    ... MedlinePlus Connect → Web Service URL of this page: https://medlineplus.gov/connect/service.html MedlinePlus Connect: Web ... the base URL for the Web service is: https://apps.nlm.nih.gov/medlineplus/services/mpconnect_service. ...

  4. MedlinePlus Connect: Web Application

    Science.gov (United States)

    ... MedlinePlus Connect → Web Application URL of this page: https://medlineplus.gov/connect/application.html MedlinePlus Connect: Web ... the base URL for the Web application is: https://apps.nlm.nih.gov/medlineplus/services/mpconnect.cfm ...

  5. Connectivity Changes in Parkinson's Disease.

    Science.gov (United States)

    Cerasa, Antonio; Novellino, Fabiana; Quattrone, Aldo

    2016-10-01

    Parkinson's disease (PD) is a chronic and progressive movement disorder of the central nervous system characterized by widespread alterations in several non-motor aspects such as mood, sleep, olfactory, and cognition in addition to motor dysfunctions. Advanced neuroimaging using functional connectivity reconstruction of the human brain has provided a vast knowledge on the pathophysiological mechanisms underlying this disorder, but this, however, does not cover the overall inter-/intra-individual variability of PD phenotypes. The present review is aimed at discussing to what extent the evidence provided by group-based neuroimaging analysis in this field of study (using seed-based, network-based, or graph theory approaches) may be generalized. In particular, we summarized the literature on the application of resting-state functional connectivity studies to explore different neural correlates of motor and non-motor symptoms of PD and the neural mechanisms involved in treatment effects: effects of levodopa or deep brain stimulation. The lesson learnt from one decade of studies provides consistent evidence on the role of the altered communication between the striato-frontal pathways as a marker of PD-related motor degeneration, whereas in the non-motor domain, several missing pieces of a complex puzzle are provided. However, the main target is to present a new era of intelligent neuroimaging applications, where automated multivariate analysis of functional connectivity data may be used for moving from group-level statistical results to personalized predictions in a clinical setting. Although in its relative infancy, the evidence gathered so far suggests a new era of clinical neuroimaging is starting. PMID:27568202

  6. Complete Convergence of Exchangeable Sequences

    Directory of Open Access Journals (Sweden)

    George Stoica

    2011-01-01

    Full Text Available We prove that exchangeable sequences converge completely in the Baum-Katz sense under the same conditions as i.i.d. sequences do. Problem statement: The research was needed as the rate of convergence in the law of large numbers for exchangeable sequences was previously obtained under restricted hypotheses. Approach: We applied powerful techniques involving inequalities for independent sequences of random variables. Results: We obtained the maximal rate of convergence and provided an example to show that our findings are sharp. Conclusion/Recommendations: The technique used in the paper may be adapted in the similar study for identically distributed sequences.

  7. Weyl Spreading Sequence Optimizing CDMA

    OpenAIRE

    Tsuda, Hirofumi; Umeno, Ken

    2016-01-01

    Recently, the new spreading sequence obtained by the Weyl sequence is proposed for CDMA systems. Its cross-correlation function follows $O(\\frac{1}{N})$, where $N$ is the code length of the spreading sequence. In this paper, we optimize the Weyl sequence code design to assign to each user for CDMA systems and we analytically calculate its theoretical SIR (Signal to Interference Noise Ratio). It is theoretically proven that the CDMA systems with spreading sequence has about 2.5 times larger ca...

  8. Connections between painting and music

    OpenAIRE

    Jerič, Tina

    2014-01-01

    Music and painting are two of the most widespread and intertwined fields of art. The interaction between the two of them is very common, which can be observed in the names of theoretical painting concepts that derive from music. The thesis explores the influence that music has had on painting both in the past and in the present. The first part of my theoretical section largely deals with the connections between music and painting. I focused on different human senses which allow us to perce...

  9. Women's connectivity in extreme networks.

    Science.gov (United States)

    Manrique, Pedro; Cao, Zhenfeng; Gabriel, Andrew; Horgan, John; Gill, Paul; Qi, Hong; Restrepo, Elvira M; Johnson, Daniela; Wuchty, Stefan; Song, Chaoming; Johnson, Neil

    2016-06-01

    A popular stereotype is that women will play more minor roles than men as environments become more dangerous and aggressive. Our analysis of new longitudinal data sets from offline and online operational networks [for example, ISIS (Islamic State)] shows that although men dominate numerically, women emerge with superior network connectivity that can benefit the underlying system's robustness and survival. Our observations suggest new female-centric approaches that could be used to affect such networks. They also raise questions about how individual contributions in high-pressure systems are evaluated. PMID:27386564

  10. Adobe Connect Pro ohjauksen apuna

    OpenAIRE

    Koukkari, Katja

    2010-01-01

    Tämän kehittämistyön tavoitteena on tarkastella, miten suunnittelijat ja opiskelijat kokevat Adobe Connect Pro -ohjelman käytön ohjauksen apuna sekä miten käytettävä ohjelma on sekä teknisesti että pedagogisesti. Teoriaosuudessa tarkastelen mm. sulautuvaa opetusta ja verkko-ohjauksen erityispiirteitä. Internet tarjoaa mahdollisuuksia sekä eriaikaiseen että reaaliaikaiseen viestintään. Perinteisesti verkkokurssin viestintä on ollut eriaikaista tekstipohjaisuuteen perustuvaa viestintää. Nykyisi...

  11. Connectivity graphs of uncertainty regions

    CERN Document Server

    Chambers, Erin; Lenchner, Jonathan; Sember, Jeff; Srinivasan, Venkatesh; Stege, Ulrike; Stolpner, Svetlana; Weibel, Christophe; Whitesides, Sue

    2010-01-01

    We study a generalization of the well known bottleneck spanning tree problem called "Best Case Connectivity with Uncertainty": Given a family of geometric regions, choose one point per region, such that the length of the longest edge in a spanning tree of a disc intersection graph is minimized. We show that this problem is NP-hard even for very simple scenarios such as line segments and squares. We also give exact and approximation algorithms for the case of line segments and unit discs respectively.

  12. Study of rectenna array connection

    Energy Technology Data Exchange (ETDEWEB)

    Miura, T.; Shinohara, N.; Matsumoto, H. [Kyoto Univ., Uji (Japan). Engineering Research Inst.

    1997-11-01

    A study was conducted in which a new rectenna working at 2.45 GHz microwave was developed for ground-to-ground microwave power transmission. The new rectenna consists of an antenna section and a rectifying section. The new design is simple and therefore more accurate than a micro-strip type patch antenna. The efficiency of conversion of microwave power to direct current depends on the mutual dependence of antenna elements and circuit conditions of rectifying sections. A series of experiments were conducted to analyze the rectenna characteristics and a method for efficiently connecting rectenna arrays was proposed. 3 refs., 2 tabs., 15 figs.

  13. New molecular connections in angiogenesis

    Institute of Scientific and Technical Information of China (English)

    Qiling Xu; David Wilkinson

    2010-01-01

    @@ In vertebrates, oxygen and nutrients are delivered to tissues by the circula-tion of blood through vessels, comprised of a branched network of endothelial tubes termed the vasculature. Crucial for the formation of blood vessels during development is the process of angiogenesis, in which new sprouts form from pre-existing vessels in a complex cascade of cellular events. This involves the activation of an endothelial cell in the vessel to become a highly exploratory 'tip' cell that migrates to invade the surrounding tissues, while remaining tightly connected to the fol-lowing cells that subsequently generate the tubular structures of a new vessel.

  14. A Building Connecting Separated Communities

    DEFF Research Database (Denmark)

    Axel, Erik

    abroad was constructed by different professional groups architects/engineers/craft persons, and how it was used by some groupings of students. In the beginning of the construction process our interviews with the architects revealed that the architect designing the house collaborated with an architect...... with students from other dormitories, and connect with the Danes from other sections of the building isolating themselves. The janitor was surprised at the supposed function of the washing machines. Since other dormitories at the campus did not provide washing machines, the ones at the house investigated were...

  15. Content, Context & Connectivity Persuasive Interplay

    DEFF Research Database (Denmark)

    Sørensen, Christian Grund

    2013-01-01

    -supported research project under EACEA). In the development of this project several categories of content have been implemented in technology enhanced learning tools. These have been designed to support learning in different contexts and eventually the role of the connectivity of these learning objects and tools is...... discussed. Focus is here on The Kaj Munk Study Edition, The Conceptual Pond, Immersive Layers Design, and Generative Learning Objects (GLOs) which are applications affiliated with the Munk case. This paper explores the persuasive potential of the interplay between the different applications for the benefit...

  16. Connecting elders by facilitating mobility

    OpenAIRE

    Goodman, J.; Brewster, S.; Gray, P.D.G.

    2004-01-01

    A key aspect of staying connected is the ability to travel and visit friends and family, yet mobile situations often pose difficulties for the older population. In this paper, we discuss how technology can support older people on the move, describing work which we have done and are doing in this area and outlining some of the challenges that lie ahead. We focus on providing support for navigation, which is a key part of travel, and outline some of the results of our work, showing that electr...

  17. Logging Data High-Resolution Sequence Stratigraphy

    Institute of Scientific and Technical Information of China (English)

    Li Hongqi; Xie Yinfu; Sun Zhongchun; Luo Xingping

    2006-01-01

    The recognition and contrast of bed sets in parasequence is difficult in terrestrial basin high-resolution sequence stratigraphy. This study puts forward new methods for the boundary identification and contrast of bed sets on the basis of manifold logging data. The formation of calcareous interbeds, shale resistivity differences and the relation of reservoir resistivity to altitude are considered on the basis of log curve morphological characteristics, core observation, cast thin section, X-ray diffraction and scanning electron microscopy. The results show that the thickness of calcareous interbeds is between 0.5 m and 2 m, increasing on weathering crusts and faults. Calcareous interbeds occur at the bottom of Reservoir resistivity increases with altitude. Calcareous interbeds may be a symbol of recognition for the boundary of bed sets and isochronous contrast bed sets, and shale resistivity differences may confirm the stack relation and connectivity of bed sets. Based on this, a high-rcsolution chronostratigraphic framework of Xi-1 segment in Shinan area, Junggar basin is presented, and the connectivity of bed sets and oil-water contact is confirmed. In this chronostratigraphic framework, the growth order, stack mode and space shape of bed sets are qualitatively and quantitatively described.

  18. Dynamical decoupling sequence construction as a filter-design problem

    Energy Technology Data Exchange (ETDEWEB)

    Biercuk, M J; Doherty, A C [Centre for Engineered Quantum Systems, School of Physics, University of Sydney, NSW 2006 (Australia); Uys, H, E-mail: michael.biercuk@sydney.edu.au, E-mail: andrew.doherty@sydney.edu.au, E-mail: huys@csir.co.za [National Laser Centre, Council for Scientific and Industrial Research, Pretoria (South Africa)

    2011-08-14

    Over the past decade we have seen an explosion of demonstrations of quantum coherence in atomic, optical and condensed matter systems. These developments have placed a new emphasis on the production of robust and optimal quantum control techniques in the presence of environmental noise. We discuss the use of dynamical decoupling as a form of open-loop quantum control capable of suppressing the effects of dephasing in quantum coherent systems. We introduce the concept of dynamical decoupling pulse-sequence construction as a filter-design problem, making connections with filter design from control theory and electrical engineering in the analysis of pulse-sequence performance for the preservation of the phase degree of freedom in a quantum superposition. A detailed mathematical description of how dephasing and its suppression can be reduced to a linear control problem is provided, and used as motivation and context for studies of the filtration properties of various dynamical decoupling sequences. Our work then takes this practical perspective in addressing both 'standard' sequences derived from nuclear magnetic resonance and novel optimized sequences developed in the context of quantum information. Additionally, we review new techniques for the numerical construction of optimized pulse sequences in this light. We show how the filter-design perspective permits concise comparisons of the relative capabilities of these sequences and reveals the physics underlying their functionality. The use of this new analytical framework allows us to derive new insights into the performance of these sequences and reveals important limiting issues, such as the effect of digital clocking on optimized sequence performance.

  19. Dynamical decoupling sequence construction as a filter-design problem

    International Nuclear Information System (INIS)

    Over the past decade we have seen an explosion of demonstrations of quantum coherence in atomic, optical and condensed matter systems. These developments have placed a new emphasis on the production of robust and optimal quantum control techniques in the presence of environmental noise. We discuss the use of dynamical decoupling as a form of open-loop quantum control capable of suppressing the effects of dephasing in quantum coherent systems. We introduce the concept of dynamical decoupling pulse-sequence construction as a filter-design problem, making connections with filter design from control theory and electrical engineering in the analysis of pulse-sequence performance for the preservation of the phase degree of freedom in a quantum superposition. A detailed mathematical description of how dephasing and its suppression can be reduced to a linear control problem is provided, and used as motivation and context for studies of the filtration properties of various dynamical decoupling sequences. Our work then takes this practical perspective in addressing both 'standard' sequences derived from nuclear magnetic resonance and novel optimized sequences developed in the context of quantum information. Additionally, we review new techniques for the numerical construction of optimized pulse sequences in this light. We show how the filter-design perspective permits concise comparisons of the relative capabilities of these sequences and reveals the physics underlying their functionality. The use of this new analytical framework allows us to derive new insights into the performance of these sequences and reveals important limiting issues, such as the effect of digital clocking on optimized sequence performance.

  20. Dynamical decoupling sequence construction as a filter-design problem

    Science.gov (United States)

    Biercuk, M. J.; Doherty, A. C.; Uys, H.

    2011-08-01

    Over the past decade we have seen an explosion of demonstrations of quantum coherence in atomic, optical and condensed matter systems. These developments have placed a new emphasis on the production of robust and optimal quantum control techniques in the presence of environmental noise. We discuss the use of dynamical decoupling as a form of open-loop quantum control capable of suppressing the effects of dephasing in quantum coherent systems. We introduce the concept of dynamical decoupling pulse-sequence construction as a filter-design problem, making connections with filter design from control theory and electrical engineering in the analysis of pulse-sequence performance for the preservation of the phase degree of freedom in a quantum superposition. A detailed mathematical description of how dephasing and its suppression can be reduced to a linear control problem is provided, and used as motivation and context for studies of the filtration properties of various dynamical decoupling sequences. Our work then takes this practical perspective in addressing both 'standard' sequences derived from nuclear magnetic resonance and novel optimized sequences developed in the context of quantum information. Additionally, we review new techniques for the numerical construction of optimized pulse sequences in this light. We show how the filter-design perspective permits concise comparisons of the relative capabilities of these sequences and reveals the physics underlying their functionality. The use of this new analytical framework allows us to derive new insights into the performance of these sequences and reveals important limiting issues, such as the effect of digital clocking on optimized sequence performance.

  1. Connectivity editing for quadrilateral meshes

    KAUST Repository

    Peng, Chihan

    2011-12-12

    We propose new connectivity editing operations for quadrilateral meshes with the unique ability to explicitly control the location, orientation, type, and number of the irregular vertices (valence not equal to four) in the mesh while preserving sharp edges. We provide theoretical analysis on what editing operations are possible and impossible and introduce three fundamental operations to move and re-orient a pair of irregular vertices. We argue that our editing operations are fundamental, because they only change the quad mesh in the smallest possible region and involve the fewest irregular vertices (i.e., two). The irregular vertex movement operations are supplemented by operations for the splitting, merging, canceling, and aligning of irregular vertices. We explain how the proposed highlevel operations are realized through graph-level editing operations such as quad collapses, edge flips, and edge splits. The utility of these mesh editing operations are demonstrated by improving the connectivity of quad meshes generated from state-of-art quadrangulation techniques. © 2011 ACM.

  2. Connectivity editing for quadrilateral meshes

    KAUST Repository

    Peng, Chihan

    2011-12-01

    We propose new connectivity editing operations for quadrilateral meshes with the unique ability to explicitly control the location, orientation, type, and number of the irregular vertices (valence not equal to four) in the mesh while preserving sharp edges. We provide theoretical analysis on what editing operations are possible and impossible and introduce three fundamental operations to move and re-orient a pair of irregular vertices. We argue that our editing operations are fundamental, because they only change the quad mesh in the smallest possible region and involve the fewest irregular vertices (i.e., two). The irregular vertex movement operations are supplemented by operations for the splitting, merging, canceling, and aligning of irregular vertices. We explain how the proposed high-level operations are realized through graph-level editing operations such as quad collapses, edge flips, and edge splits. The utility of these mesh editing operations are demonstrated by improving the connectivity of quad meshes generated from state-of-art quadrangulation techniques.

  3. Generalized magnetofluid connections in pair plasmas

    Energy Technology Data Exchange (ETDEWEB)

    Asenjo, Felipe A., E-mail: felipe.asenjo@uai.cl [Facultad de Ingeniería y Ciencias, Universidad Adolfo Ibáñez, Santiago 7941169 (Chile); Comisso, Luca, E-mail: lcomisso@princeton.edu [Department of Astrophysical Sciences and Princeton Plasma Physics Laboratory, Princeton University, Princeton, New Jersey 08544 (United States); Dipartimento Energia, Politecnico di Torino, Torino 10129, Italy and Istituto dei Sistemi Complessi-CNR, Roma 00185 (Italy); Mahajan, Swadesh M., E-mail: mahajan@mail.utexas.edu [Institute for Fusion Studies, The University of Texas at Austin, Austin, Texas 78712 (United States)

    2015-12-15

    We extend the magnetic connection theorem of ideal magnetohydrodynamics to nonideal relativistic pair plasmas. Adopting a generalized Ohm's law, we prove the existence of generalized magnetofluid connections that are preserved by the plasma dynamics. We show that these connections are related to a general antisymmetric tensor that unifies the electromagnetic and fluid fields. The generalized magnetofluid connections set important constraints on the plasma dynamics by forbidding transitions between configurations with different magnetofluid connectivity. An approximated solution is explicitly shown where the corrections due to current inertial effects are found.

  4. Making connections: reflection, feedback and support

    Directory of Open Access Journals (Sweden)

    Jane Seale

    2007-12-01

    Full Text Available Hansell (1974 conceptualized seven different connections or attachments that we have to the world in which we live: attachments that consist of connections to other people, to a social role as well as to a system of meaning. For many, learning is at the heart of the process of making connections, particularly meaningful connections (Horton, 2000. If this is true, then it leads us to consider the extent to which educators, the systems they work in and the tools they use have a role to play in helping learners make those meaningful connections. For example, Scherer (2002, p. 5 suggests that educational systems have a responsibility to:

  5. Behavior of concentrically loaded CFT braces connections

    Directory of Open Access Journals (Sweden)

    Maha M. Hassan

    2014-03-01

    Full Text Available Concrete filled tubes (CFTs composite columns have many economical and esthetic advantages, but the behavior of their connections is complicated. Through this study, it is aimed to investigate the performance and behavior of different connection configurations between concrete filled steel tube columns and bracing diagonals through an experimental program. The study included 12 connection subassemblies consisting of a fixed length steel tube and gusset plate connected to the tube end with different details tested under half cyclic loading. A notable effect was observed on the behavior of the connections due to its detailing changes with respect to capacity, failure mode, ductility, and stress distribution.

  6. Generalized magnetofluid connections in pair plasmas

    Science.gov (United States)

    Asenjo, Felipe A.; Comisso, Luca; Mahajan, Swadesh M.

    2015-12-01

    We extend the magnetic connection theorem of ideal magnetohydrodynamics to nonideal relativistic pair plasmas. Adopting a generalized Ohm's law, we prove the existence of generalized magnetofluid connections that are preserved by the plasma dynamics. We show that these connections are related to a general antisymmetric tensor that unifies the electromagnetic and fluid fields. The generalized magnetofluid connections set important constraints on the plasma dynamics by forbidding transitions between configurations with different magnetofluid connectivity. An approximated solution is explicitly shown where the corrections due to current inertial effects are found.

  7. Generalized Magnetofluid Connections in Pair Plasmas

    CERN Document Server

    Asenjo, Felipe A; Mahajan, Swadesh M

    2015-01-01

    We extend the magnetic connection theorem of ideal magnetohydrodynamics to nonideal relativistic pair plasmas. Adopting a generalized Ohm's law, we prove the existence of generalized magnetofluid connections that are preserved by the plasma dynamics. We show that these connections are related to a general antisymmetric tensor that unifies the electromagnetic and fluid fields. The generalized magnetofluid connections set important constraints on the plasma dynamics by forbidding transitions between configurations with different magnetofluid connectivity. An approximated solution is explicitly shown where the corrections due to current inertial effects are found.

  8. Generalized magnetofluid connections in relativistic magnetohydrodynamics.

    Science.gov (United States)

    Asenjo, Felipe A; Comisso, Luca

    2015-03-20

    The concept of magnetic connections is extended to nonideal relativistic magnetohydrodynamical plasmas. Adopting a general set of equations for relativistic magnetohydrodynamics including thermal-inertial, thermal electromotive, Hall, and current-inertia effects, we derive a new covariant connection equation showing the existence of generalized magnetofluid connections that are preserved during the dissipationless plasma dynamics. These connections are intimately linked to a general antisymmetric tensor that unifies the electromagnetic and fluid fields, allowing the extension of the magnetic connection notion to a much broader concept. PMID:25839284

  9. Generalized magnetofluid connections in pair plasmas

    International Nuclear Information System (INIS)

    We extend the magnetic connection theorem of ideal magnetohydrodynamics to nonideal relativistic pair plasmas. Adopting a generalized Ohm's law, we prove the existence of generalized magnetofluid connections that are preserved by the plasma dynamics. We show that these connections are related to a general antisymmetric tensor that unifies the electromagnetic and fluid fields. The generalized magnetofluid connections set important constraints on the plasma dynamics by forbidding transitions between configurations with different magnetofluid connectivity. An approximated solution is explicitly shown where the corrections due to current inertial effects are found

  10. Quantum-Sequencing: Fast electronic single DNA molecule sequencing

    Science.gov (United States)

    Casamada Ribot, Josep; Chatterjee, Anushree; Nagpal, Prashant

    2014-03-01

    A major goal of third-generation sequencing technologies is to develop a fast, reliable, enzyme-free, high-throughput and cost-effective, single-molecule sequencing method. Here, we present the first demonstration of unique ``electronic fingerprint'' of all nucleotides (A, G, T, C), with single-molecule DNA sequencing, using Quantum-tunneling Sequencing (Q-Seq) at room temperature. We show that the electronic state of the nucleobases shift depending on the pH, with most distinct states identified at acidic pH. We also demonstrate identification of single nucleotide modifications (methylation here). Using these unique electronic fingerprints (or tunneling data), we report a partial sequence of beta lactamase (bla) gene, which encodes resistance to beta-lactam antibiotics, with over 95% success rate. These results highlight the potential of Q-Seq as a robust technique for next-generation sequencing.

  11. Network clustering coefficient approach to DNA sequence analysis

    Energy Technology Data Exchange (ETDEWEB)

    Gerhardt, Guenther J.L. [Universidade Federal do Rio Grande do Sul-Hospital de Clinicas de Porto Alegre, Rua Ramiro Barcelos 2350/sala 2040/90035-003 Porto Alegre (Brazil); Departamento de Fisica e Quimica da Universidade de Caxias do Sul, Rua Francisco Getulio Vargas 1130, 95001-970 Caxias do Sul (Brazil); Lemke, Ney [Programa Interdisciplinar em Computacao Aplicada, Unisinos, Av. Unisinos, 950, 93022-000 Sao Leopoldo, RS (Brazil); Corso, Gilberto [Departamento de Biofisica e Farmacologia, Centro de Biociencias, Universidade Federal do Rio Grande do Norte, Campus Universitario, 59072 970 Natal, RN (Brazil)]. E-mail: corso@dfte.ufrn.br

    2006-05-15

    In this work we propose an alternative DNA sequence analysis tool based on graph theoretical concepts. The methodology investigates the path topology of an organism genome through a triplet network. In this network, triplets in DNA sequence are vertices and two vertices are connected if they occur juxtaposed on the genome. We characterize this network topology by measuring the clustering coefficient. We test our methodology against two main bias: the guanine-cytosine (GC) content and 3-bp (base pairs) periodicity of DNA sequence. We perform the test constructing random networks with variable GC content and imposed 3-bp periodicity. A test group of some organisms is constructed and we investigate the methodology in the light of the constructed random networks. We conclude that the clustering coefficient is a valuable tool since it gives information that is not trivially contained in 3-bp periodicity neither in the variable GC content.

  12. Network clustering coefficient approach to DNA sequence analysis

    International Nuclear Information System (INIS)

    In this work we propose an alternative DNA sequence analysis tool based on graph theoretical concepts. The methodology investigates the path topology of an organism genome through a triplet network. In this network, triplets in DNA sequence are vertices and two vertices are connected if they occur juxtaposed on the genome. We characterize this network topology by measuring the clustering coefficient. We test our methodology against two main bias: the guanine-cytosine (GC) content and 3-bp (base pairs) periodicity of DNA sequence. We perform the test constructing random networks with variable GC content and imposed 3-bp periodicity. A test group of some organisms is constructed and we investigate the methodology in the light of the constructed random networks. We conclude that the clustering coefficient is a valuable tool since it gives information that is not trivially contained in 3-bp periodicity neither in the variable GC content

  13. Block Iterative Eigensolvers for Sequences of Correlated Eigenvalue Problems

    CERN Document Server

    Di Napoli, Edoardo

    2012-01-01

    In Density Functional Theory simulations based on the LAPW method, each self-consistent cycle comprises dozens of large dense generalized eigenproblems. In contrast to real-space methods, eigenpairs solving for problems at distinct cycles have either been believed to be independent or at most very loosely connected. In a recent study \\cite{DBB}, it was proposed to revert this point of view and consider simulations as made of dozens of sequences of eigenvalue problems; each sequence groups together eigenproblems with equal {\\bf k}-vectors and an increasing outer-iteration cycle index $\\ell$. From this different standpoint it was possible to demonstrate that, contrary to belief, successive eigenproblems in a sequence are strongly correlated with one another. In particular, by tracking the evolution of subspace angles between eigenvectors of successive eigenproblems, it was shown that these angles decrease noticeably after the first few iterations and become close to collinear: the closer to convergence the stro...

  14. STRENGTH DESIGN OF PREMIUM THREADED CASING CONNECTION

    Institute of Scientific and Technical Information of China (English)

    Gao Lianxin; Jin Ye; Zhang Yi

    2004-01-01

    Using premium casing connections instead of API ones is one of the most effective technique to prevent casing failure.The factors contribute to the strength of premium casing connections are studied with FEA and full-scale test.The criterions are presented that ensure the connection's strength higher than the pipe.At the same time, the method is given to decrease the peak stress of the connection so as to improve its anticorruption property.At last, full-scale tests are done to test the strength of the connections designed with the method described, the results show that the connection's strength is higher than the pipe.This indicated that the method described is effective in designing premium casing connection.

  15. Investigation into Methods for Predicting Connection Temperatures

    Directory of Open Access Journals (Sweden)

    K. Anderson

    2009-01-01

    Full Text Available The mechanical response of connections in fire is largely based on material strength degradation and the interactions between the various components of the connection. In order to predict connection performance in fire, temperature profiles must initially be established in order to evaluate the material strength degradation over time. This paper examines two current methods for predicting connection temperatures: The percentage method, where connection temperatures are calculated as a percentage of the adjacent beam lower-flange, mid-span temperatures; and the lumped capacitance method, based on the lumped mass of the connection. Results from the percentage method do not correlate well with experimental results, whereas the lumped capacitance method shows much better agreement with average connection temperatures. A 3D finite element heat transfer model was also created in Abaqus, and showed good correlation with experimental results. 

  16. Random geometric graphs with general connection functions

    Science.gov (United States)

    Dettmann, Carl P.; Georgiou, Orestis

    2016-03-01

    In the original (1961) Gilbert model of random geometric graphs, nodes are placed according to a Poisson point process, and links formed between those within a fixed range. Motivated by wireless ad hoc networks "soft" or "probabilistic" connection models have recently been introduced, involving a "connection function" H (r ) that gives the probability that two nodes at distance r are linked (directly connect). In many applications (not only wireless networks), it is desirable that the graph is connected; that is, every node is linked to every other node in a multihop fashion. Here the connection probability of a dense network in a convex domain in two or three dimensions is expressed in terms of contributions from boundary components for a very general class of connection functions. It turns out that only a few quantities such as moments of the connection function appear. Good agreement is found with special cases from previous studies and with numerical simulations.

  17. Comparative statistics for DNA and protein sequences: multiple sequence analysis.

    OpenAIRE

    Karlin, S.; Ghandour, G

    1985-01-01

    Concepts and methods [Karlin, S. & Ghandour, G. (1985) Proc. Natl. Acad. Sci. USA 82, 5800-5804] for the analysis of patterns and relationships are extended to multiple DNA and protein sequences. Functionals include multiple sequence common word occurrence distributions, characterizations of high frequency shared words, and ascertainment of long block identities. Various comparisons of sequences using natural alphabets obtained from grouping nucleotides or amino acids by their chemical and fu...

  18. Connectivity in the deep: Phylogeography of the velvet belly lanternshark

    Science.gov (United States)

    Gubili, Chrysoula; Macleod, Kirsty; Perry, William; Hanel, Pia; Batzakas, Ioannis; Farrell, Edward D.; Lynghammar, Arve; Mancusi, Cecilia; Mariani, Stefano; Menezes, Gui M.; Neat, Francis; Scarcella, Giuseppe; Griffiths, Andrew M.

    2016-09-01

    The velvet belly lanternshark, Etmopterus spinax, is a deep-sea bioluminescent squaloid shark, found predominantly in the Northeast Atlantic and Mediterranean Sea. It has been exposed to relatively high levels of mortality associated with by-catch in some regions. Its late maturity and low fecundity potentially renders it vulnerable to over-exploitation, although little remains known about processes of connectivity between key habitats/regions. This study utilised DNA sequencing of partial regions of the mitochondrial control region and nuclear ribosomal internal transcribed spacer 2 to investigate population structure and phylogeography of this species across the Northeast Atlantic and Mediterranean Basin. Despite the inclusion of samples from the range edges or remote locations, no evidence of significant population structure was detected. An important exception was identified using the control region sequence, with much greater (and statistically significant) levels of genetic differentiation between the Mediterranean and Atlantic. This suggests that the Strait of Gibraltar may represent an important bathymetric barrier, separating regions with very low levels of female dispersal. Bayesian estimation of divergence time also places the separation between the Mediterranean and Atlantic lineages within the last 100,000 years, presumably connected with perturbations during the last Glacial Period. These results demonstrate population subdivision at a much smaller geographic distance than has generally been identified in previous work on deep-sea sharks. This highlights a very significant role for shallow bathymetry in promoting genetic differentiation in deepwater taxa. It acts as an important exception to a general paradigm of marine species being connected by high levels of gene-flow, representing single stocks over large scales. It may also have significant implications for the fisheries management of this species.

  19. On-line integration of PCR and cycle sequencing in capillaries: from human genomic DNA directly to called bases

    OpenAIRE

    Hashimoto, Masahiko; He, Yan; Yeung, Edward S.

    2003-01-01

    A fully integrated system has been developed for genetic analysis based on direct sequencing of polymerase chain reaction (PCR) products. The instrument is based on a serially connected fused-silica capillary assembly. The technique involves the use of microreactors for small-volume PCR and for dye-terminator cycle-sequencing reaction, purification of the sequencing fragments, and separation of the purified DNA ladder. Four modifications to the normal PCR protocol allow the elimination of pos...

  20. Physical Complexity of Symbolic Sequences

    CERN Document Server

    Adami, C

    2008-01-01

    A practical measure for the complexity of sequences of symbols (``strings'') is introduced that is rooted in automata theory but avoids the problems of Kolmogorov-Chaitin complexity. This physical complexity can be estimated for ensembles of sequences, for which it reverts to the difference between the maximal entropy of the ensemble and the actual entropy given the specific environment within which the sequence is to be interpreted. Thus, the physical complexity measures the amount of information about the environment that is coded in the sequence, and is conditional on such an environment. In practice, an estimate of the complexity of a string can be obtained by counting the number of loci per string that are fixed in the ensemble, while the volatile positions represent, again with respect to the environment, randomness. We apply this measure to tRNA sequence data. - Substantially improved and clarified version, includes application to EMBL tRNA sequence data

  1. Turtle Graphics of Morphic Sequences

    Science.gov (United States)

    Zantema, Hans

    2016-02-01

    The simplest infinite sequences that are not ultimately periodic are pure morphic sequences: fixed points of particular morphisms mapping single symbols to strings of symbols. A basic way to visualize a sequence is by a turtle curve: for every alphabet symbol fix an angle, and then consecutively for all sequence elements draw a unit segment and turn the drawing direction by the corresponding angle. This paper investigates turtle curves of pure morphic sequences. In particular, criteria are given for turtle curves being finite (consisting of finitely many segments), and for being fractal or self-similar: it contains an up-scaled copy of itself. Also space-filling turtle curves are considered, and a turtle curve that is dense in the plane. As a particular result we give an exact relationship between the Koch curve and a turtle curve for the Thue-Morse sequence, where until now for such a result only approximations were known.

  2. Graphene nanodevices for DNA sequencing

    Science.gov (United States)

    Heerema, Stephanie J.; Dekker, Cees

    2016-02-01

    Fast, cheap, and reliable DNA sequencing could be one of the most disruptive innovations of this decade, as it will pave the way for personalized medicine. In pursuit of such technology, a variety of nanotechnology-based approaches have been explored and established, including sequencing with nanopores. Owing to its unique structure and properties, graphene provides interesting opportunities for the development of a new sequencing technology. In recent years, a wide range of creative ideas for graphene sequencers have been theoretically proposed and the first experimental demonstrations have begun to appear. Here, we review the different approaches to using graphene nanodevices for DNA sequencing, which involve DNA passing through graphene nanopores, nanogaps, and nanoribbons, and the physisorption of DNA on graphene nanostructures. We discuss the advantages and problems of each of these key techniques, and provide a perspective on the use of graphene in future DNA sequencing technology.

  3. Method for hermetic electrical connections

    Science.gov (United States)

    Monroe, Saundra L.; Glass, S. Jill; Stone, Ronnie G.; Bond, Jamey T.; Susan, Donald F.

    2011-12-27

    A method of providing a hermetic, electrical connection between two electrical components by mating at least one metal pin in a glass-ceramic to metal seal connector to two electrical components, wherein the glass-ceramic to metal seal connector incorporates at least one metal pin encased (sealed) in a glass-ceramic material inside of a metal housing, with the glass-ceramic material made from 65-80% SiO.sub.2, 8-16% Li.sub.2O, 2-8% Al.sub.2O.sub.3, 1-5% P.sub.2O.sub.5, 1-8% K.sub.2O, 0.5-7% B.sub.2O.sub.3, and 0-5% ZnO. The connector retains hermeticity at temperatures as high as 700.degree. C. and pressures as high as 500 psi.

  4. Proliferating Connections and Communicating Convergence

    Directory of Open Access Journals (Sweden)

    Aylish Wood

    2008-01-01

    Full Text Available In this paper I use the work of Niklas Luhmann to explore what pressure the concept of convergence exerts over how we communicate about the changing expressive practices of digital games following the emergence of digital technologies. My claim will be that in its current form, convergence privileges either the human users of technological platforms, or the combination of aesthetic conventions from different media what connects is either the user or the aesthetic code. While neither of these two positions would be likely to deny a reliance on the interplay between humans and technologies, such an interplay is taken for granted rather than explored. By using Luhmann’s version of systems theory, I argue that we can more effectively grasp the interplay of human and technological participants by understanding their combined roles in changing expressive practices.

  5. Short sequence motifs, overrepresented in mammalian conservednon-coding sequences

    Energy Technology Data Exchange (ETDEWEB)

    Minovitsky, Simon; Stegmaier, Philip; Kel, Alexander; Kondrashov,Alexey S.; Dubchak, Inna

    2007-02-21

    Background: A substantial fraction of non-coding DNAsequences of multicellular eukaryotes is under selective constraint. Inparticular, ~;5 percent of the human genome consists of conservednon-coding sequences (CNSs). CNSs differ from other genomic sequences intheir nucleotide composition and must play important functional roles,which mostly remain obscure.Results: We investigated relative abundancesof short sequence motifs in all human CNSs present in the human/mousewhole-genome alignments vs. three background sets of sequences: (i)weakly conserved or unconserved non-coding sequences (non-CNSs); (ii)near-promoter sequences (located between nucleotides -500 and -1500,relative to a start of transcription); and (iii) random sequences withthe same nucleotide composition as that of CNSs. When compared tonon-CNSs and near-promoter sequences, CNSs possess an excess of AT-richmotifs, often containing runs of identical nucleotides. In contrast, whencompared to random sequences, CNSs contain an excess of GC-rich motifswhich, however, lack CpG dinucleotides. Thus, abundance of short sequencemotifs in human CNSs, taken as a whole, is mostly determined by theiroverall compositional properties and not by overrepresentation of anyspecific short motifs. These properties are: (i) high AT-content of CNSs,(ii) a tendency, probably due to context-dependent mutation, of A's andT's to clump, (iii) presence of short GC-rich regions, and (iv) avoidanceof CpG contexts, due to their hypermutability. Only a small number ofshort motifs, overrepresented in all human CNSs are similar to bindingsites of transcription factors from the FOX family.Conclusion: Human CNSsas a whole appear to be too broad a class of sequences to possess strongfootprints of any short sequence-specific functions. Such footprintsshould be studied at the level of functional subclasses of CNSs, such asthose which flank genes with a particular pattern of expression. Overallproperties of CNSs are affected by

  6. Spatiotemporal correlations of aftershock sequences

    OpenAIRE

    Peixoto, Tiago P.; Doblhoff-Dier, Katharina; Davidsen, Jörn

    2010-01-01

    Aftershock sequences are of particular interest in seismic research since they may condition seismic activity in a given region over long time spans. While they are typically identified with periods of enhanced seismic activity after a large earthquake as characterized by the Omori law, our knowledge of the spatiotemporal correlations between events in an aftershock sequence is limited. Here, we study the spatiotemporal correlations of two aftershock sequences form California (Parkfield and H...

  7. Cutting sequences on translation surfaces

    OpenAIRE

    Davis, Diana

    2013-01-01

    We analyze the cutting sequences associated to geodesic flow on a large class of translation surfaces, including Bouw-Moller surfaces. We give a combinatorial rule that relates a cutting sequence corresponding to a given trajectory, to the cutting sequence corresponding to the image of that trajectory under the parabolic element of the Veech group. This extends previous work for regular polygon surfaces to a larger class of translation surfaces. We find that the combinatorial rule is the same...

  8. Structural connectivity of the developing human amygdala.

    Science.gov (United States)

    Saygin, Zeynep M; Osher, David E; Koldewyn, Kami; Martin, Rebecca E; Finn, Amy; Saxe, Rebecca; Gabrieli, John D E; Sheridan, Margaret

    2015-01-01

    A large corpus of research suggests that there are changes in the manner and degree to which the amygdala supports cognitive and emotional function across development. One possible basis for these developmental differences could be the maturation of amygdalar connections with the rest of the brain. Recent functional connectivity studies support this conclusion, but the structural connectivity of the developing amygdala and its different nuclei remains largely unstudied. We examined age related changes in the DWI connectivity fingerprints of the amygdala to the rest of the brain in 166 individuals of ages 5-30. We also developed a model to predict age based on individual-subject amygdala connectivity, and identified the connections that were most predictive of age. Finally, we segmented the amygdala into its four main nucleus groups, and examined the developmental changes in connectivity for each nucleus. We observed that with age, amygdalar connectivity becomes increasingly sparse and localized. Age related changes were largely localized to the subregions of the amygdala that are implicated in social inference and contextual memory (the basal and lateral nuclei). The central nucleus' connectivity also showed differences with age but these differences affected fewer target regions than the basal and lateral nuclei. The medial nucleus did not exhibit any age related changes. These findings demonstrate increasing specificity in the connectivity patterns of amygdalar nuclei across age. PMID:25875758

  9. Local Natural Connectivity in Complex Networks

    Institute of Scientific and Technical Information of China (English)

    SHANG Yi-Lun

    2011-01-01

    @@ In network theory, a complex network represents a system whose evolving structure and dynamic behavior contribute to its robustness.The natural connectivity is recently proposed as a spectral measure to characterize the robustness of complex networks.We decompose the natural connectivity of a network as local natural connectivity of its connected components and quantify their contributions to the network robustness.In addition, we compare the natural connectivity of a network with that of an induced subgraph of it based on interlacing theorems.As an application, we derive an inequality for eigenvalues of ErdSs-Renyi random graphs.%In network theory, a complex network represents a system whose evolving structure and dynamic behavior contribute to its robustness. The natural connectivity is recently proposed as a spectral measure to characterize the robustness of complex networks. We decompose the natural connectivity of a network as local naturai connectivity of its connected components and quantify their contributions to the network robustness. In addition, we compare the naturai connectivity of a network with that of an induced subgraph of it based on interlacing theorems. As an application, we derive an inequality for eigenvalues of Erdos-Renyi random graphs.

  10. SNMR pulse sequence phase cycling

    Science.gov (United States)

    Walsh, David O; Grunewald, Elliot D

    2013-11-12

    Technologies applicable to SNMR pulse sequence phase cycling are disclosed, including SNMR acquisition apparatus and methods, SNMR processing apparatus and methods, and combinations thereof. SNMR acquisition may include transmitting two or more SNMR pulse sequences and applying a phase shift to a pulse in at least one of the pulse sequences, according to any of a variety cycling techniques. SNMR processing may include combining SNMR from a plurality of pulse sequences comprising pulses of different phases, so that desired signals are preserved and indesired signals are canceled.

  11. Fast global sequence alignment technique

    KAUST Repository

    Bonny, Mohamed Talal

    2011-11-01

    Bioinformatics database is growing exponentially in size. Processing these large amount of data may take hours of time even if super computers are used. One of the most important processing tool in Bioinformatics is sequence alignment. We introduce fast alignment algorithm, called \\'Alignment By Scanning\\' (ABS), to provide an approximate alignment of two DNA sequences. We compare our algorithm with the wellknown sequence alignment algorithms, the \\'GAP\\' (which is heuristic) and the \\'Needleman-Wunsch\\' (which is optimal). The proposed algorithm achieves up to 51% enhancement in alignment score when it is compared with the GAP Algorithm. The evaluations are conducted using different lengths of DNA sequences. © 2011 IEEE.

  12. Blazar Sequence in Fermi Era

    Indian Academy of Sciences (India)

    Liang Chen

    2014-09-01

    In this paper, we review the latest research results on the topic of blazar sequence. It seems that the blazar sequence is phenomenally ruled out, while the theoretical blazar sequence still holds. We point out that black hole mass is a dominated parameter accounting for high-power-high-synchrotron-peaked and low-power-low-sychrotron-peaked blazars. Because most blazars have similar size of emission region, theoretical blazar sequence implies that the break of Spectral Energy Distribution (SED) is a cooling break in nature.

  13. ABS: Sequence alignment by scanning

    KAUST Repository

    Bonny, Mohamed Talal

    2011-08-01

    Sequence alignment is an essential tool in almost any computational biology research. It processes large database sequences and considered to be high consumers of computation time. Heuristic algorithms are used to get approximate but fast results. We introduce fast alignment algorithm, called Alignment By Scanning (ABS), to provide an approximate alignment of two DNA sequences. We compare our algorithm with the well-known alignment algorithms, the FASTA (which is heuristic) and the \\'Needleman-Wunsch\\' (which is optimal). The proposed algorithm achieves up to 76% enhancement in alignment score when it is compared with the FASTA Algorithm. The evaluations are conducted using different lengths of DNA sequences. © 2011 IEEE.

  14. Transcriptional sequencing: A method for DNA sequencing using RNA polymerase

    OpenAIRE

    Sasaki, Nobuya; Izawa, Masaki; Watahiki, Masanori; Ozawa, Kaori; Tanaka, Takumi; Yoneda, Yuko; Matsuura, Shuji; Carninci, Piero; Muramatsu, Masami; Okazaki, Yasushi; Hayashizaki, Yoshihide

    1998-01-01

    We have developed a sequencing method based on the RNA polymerase chain termination reaction with rhodamine dye attached to 3′-deoxynucleoside triphosphate (3′-dNTP). This method enables us to conduct a rapid isothermal sequencing reaction in

  15. Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria

    DEFF Research Database (Denmark)

    Larsen, Mette Voldby; Cosentino, Salvatore; Rasmussen, Simon;

    2012-01-01

    Accurate strain identification is essential for anyone working with bacteria. For many species, multilocus sequence typing (MLST) is considered the "gold standard" of typing, but it is traditionally performed in an expensive and time-consuming manner. As the costs of whole-genome sequencing (WGS)...

  16. Evaluation of a rapid, multi-phase MRE sequence in a heart-simulating phantom

    OpenAIRE

    Kolipaka, Arunark; McGee, Kiaran P.; Araoz, Philip A; Glaser, Kevin J.; Manduca, Armando; Ehman, Richard L.

    2009-01-01

    The aims of this study were to validate stiffness estimates of a phantom undergoing cyclic deformation obtained using a multi-phase magnetic resonance elastography (MRE) imaging sequence by comparison with those obtained using a single-phase MRE sequence and to quantify the stability of the multi-phase-derived stiffness estimates as a function of deformation frequency and imaging parameters. A spherical rubber-shell of 10 cm diameter and 1 cm thickness was connected to a computerized flow pum...

  17. Sequence Algebra, Sequence Decision Diagrams and Dynamic Fault Trees

    Energy Technology Data Exchange (ETDEWEB)

    Rauzy, Antoine B., E-mail: Antoine.Rauzy@lix.polytechnique.f [LIX-CNRS, Computer Science, Ecole Polytechnique, 91128 Palaiseau Cedex (France)

    2011-07-15

    A large attention has been focused on the Dynamic Fault Trees in the past few years. By adding new gates to static (regular) Fault Trees, Dynamic Fault Trees aim to take into account dependencies among events. Merle et al. proposed recently an algebraic framework to give a formal interpretation to these gates. In this article, we extend Merle et al.'s work by adopting a slightly different perspective. We introduce Sequence Algebras that can be seen as Algebras of Basic Events, representing failures of non-repairable components. We show how to interpret Dynamic Fault Trees within this framework. Finally, we propose a new data structure to encode sets of sequences of Basic Events: Sequence Decision Diagrams. Sequence Decision Diagrams are very much inspired from Minato's Zero-Suppressed Binary Decision Diagrams. We show that all operations of Sequence Algebras can be performed on this data structure.

  18. Natural environments, nature relatedness and the ecological theater: connecting satellites and sequencing to shinrin-yoku.

    Science.gov (United States)

    Craig, Jeffrey M; Logan, Alan C; Prescott, Susan L

    2016-01-01

    Recent advances in research concerning the public health value of natural environments have been remarkable. The growing interest in this topic (often housed under terms such as green and/or blue space) has been occurring in parallel with the microbiome revolution and an increased use of remote sensing technology in public health. In the context of biodiversity loss, rapid urbanization, and alarming rates of global non-communicable diseases (many associated with chronic, low-grade inflammation), discussions of natural vis-a-vis built environments are not merely fodder for intellectual curiosity. Here, we argue for increased interdisciplinary collaboration with the aim of better understanding the mechanisms-including aerobiological and epigenetic-that might help explain some of the noted positive health outcomes. It is our contention that some of these mechanisms are related to ecodiversity (i.e., the sum of biodiversity and geodiversity, including biotic and abiotic constituents). We also encourage researchers to more closely examine individual nature relatedness and how it might influence many outcomes that are at the interface of lifestyle habits and contact with ecodiversity. PMID:26763049

  19. TE-dependent spatial and spectral specificity of functional connectivity.

    Science.gov (United States)

    Wu, Changwei W; Gu, Hong; Zou, Qihong; Lu, Hanbing; Stein, Elliot A; Yang, Yihong

    2012-02-15

    Previous studies suggest that spontaneous fluctuations in the resting-state fMRI (RS-fMRI) signal may reflect fluctuations in transverse relaxation time (T(2)(*)) rather than spin density (S(0)). However, such S(0) and T(2)(*) features have not been well characterized. In this study, spatial and spectral characteristics of functional connectivity on sensorimotor, default-mode, dorsal attention, and primary visual systems were examined using a multiple gradient-echo sequence at 3T. In the spatial domain, we found broad, local correlations at short echo times (TE ≤ 14 ms) due to dominant S(0) contribution, whereas long-range connections mediated by T(2)(*) became explicit at TEs longer than 22 ms. In the frequency domain, compared with the flat spectrum of S(0), spectral power of the T(2)(*)-weighted signal elevated significantly with increasing TE, particularly in the frequency ranges of 0.008-0.023 Hz and 0.037-0.043 Hz. Using the S(0) spectrum as a reference, we propose two indices to measure spectral signal change (SSC) and spectral contrast-to-noise ratio (SCNR), respectively, for quantifying the RS-fMRI signal. These indices demonstrated TE dependency of connectivity-related fluctuation strength, resembling functional contrasts in activation-based fMRI. These findings further confirm that large-scale functional circuit connectivity based on BOLD contrast may be constrained within specific frequency ranges in every brain network, and the spectral features of S(0) and T(2)(*) could be valuable for interpreting and quantifying RS-fMRI data. PMID:22119650

  20. A Multidata Connection Scheme for Big Data High-Dimension Using the Data Connection Coefficient

    Directory of Open Access Journals (Sweden)

    Yoon-su Jeong

    2015-01-01

    Full Text Available In the era of big data and cloud computing, sources and types of data vary, and the volume and flow of data are massive and continuous. With the widespread use of mobile devices and the Internet, huge volumes of data distributed over heterogeneous networks move forward and backward across networks. In order to meet the demands of big data service providers and customers, efficient technologies for processing and transferring big data over networks are needed. This paper proposes a multidata connection (MDC scheme that decreases the amount of power and time necessary for information to be communicated between the content server and the mobile users (i.e., the content consumers who are moving freely across different networks while using their mobile devices. MDC scheme is an approach to data validation that requires the presentation of two or more pieces of data in a heterogeneous environment of big data. The MDC transmits the difference of the consecutive data sequences instead of sending the data itself to the receiver, thus increasing transmission throughput and speed.

  1. Changes in effective connectivity by propofol sedation.

    Directory of Open Access Journals (Sweden)

    Francisco Gómez

    Full Text Available Mechanisms of propofol-induced loss of consciousness remain poorly understood. Recent fMRI studies have shown decreases in functional connectivity during unconsciousness induced by this anesthetic agent. Functional connectivity does not provide information of directional changes in the dynamics observed during unconsciousness. The aim of the present study was to investigate, in healthy humans during an auditory task, the changes in effective connectivity resulting from propofol induced loss of consciousness. We used Dynamic Causal Modeling for fMRI (fMRI-DCM to assess how causal connectivity is influenced by the anesthetic agent in the auditory system. Our results suggest that the dynamic observed in the auditory system during unconsciousness induced by propofol, can result in a mixture of two effects: a local inhibitory connectivity increase and a decrease in the effective connectivity in sensory cortices.

  2. Changes in Effective Connectivity by Propofol Sedation

    Science.gov (United States)

    Soddu, Andrea; Boly, Melanie; Boveroux, Pierre; Vanhaudenhuyse, Audrey; Bruno, Marie-Aurélie; Gosseries, Olivia; Bonhomme, Vincent; Laureys, Steven; Noirhomme, Quentin

    2013-01-01

    Mechanisms of propofol-induced loss of consciousness remain poorly understood. Recent fMRI studies have shown decreases in functional connectivity during unconsciousness induced by this anesthetic agent. Functional connectivity does not provide information of directional changes in the dynamics observed during unconsciousness. The aim of the present study was to investigate, in healthy humans during an auditory task, the changes in effective connectivity resulting from propofol induced loss of consciousness. We used Dynamic Causal Modeling for fMRI (fMRI-DCM) to assess how causal connectivity is influenced by the anesthetic agent in the auditory system. Our results suggest that the dynamic observed in the auditory system during unconsciousness induced by propofol, can result in a mixture of two effects: a local inhibitory connectivity increase and a decrease in the effective connectivity in sensory cortices. PMID:23977030

  3. Modeling of preloaded threaded pipe connections

    OpenAIRE

    Van Wittenberghe, Jeroen; DE BAETS, Patrick; De Waele, Wim

    2009-01-01

    In this paper a modeling method to perform parametric studies on preloaded threaded connections is presented. The method uses a non-linear 2D axisymmetric finite element model, and is illustrated by a parametric study of an API Line Pipe connection. The method was used to quantify the influence of the coefficient of friction, the wall thickness of pin and box and the box recess length of the connection.

  4. Connected Car: Quantified Self becomes Quantified Car

    OpenAIRE

    Melanie Swan

    2015-01-01

    The automotive industry could be facing a situation of profound change and opportunity in the coming decades. There are a number of influencing factors such as increasing urban and aging populations, self-driving cars, 3D parts printing, energy innovation, and new models of transportation service delivery (Zipcar, Uber). The connected car means that vehicles are now part of the connected world, continuously Internet-connected, generating and transmitting data, which on the one hand can be hel...

  5. Review on Cold-Formed Steel Connections

    OpenAIRE

    2014-01-01

    The concept of cold-formed light steel framing construction has been widespread after understanding its structural characteristics with massive research works over the years. Connection serves as one of the important elements for light steel framing in order to achieve its structural stability. Compared to hot-rolled steel sections, cold-formed steel connections perform dissimilarity due to the thin-walled behaviour. This paper aims to review current researches on cold-formed steel connection...

  6. Bluetooth LE (Low Energy) Connection Management

    OpenAIRE

    Khan, Olid Hossain

    2015-01-01

    This Bachelor’s thesis describes an Android Bluetooth Low Energy connection management collects sensor measurement data frequently and continuously from Bluetooth Low Energy devices to an Android phone. Currently there exists no such application that can connect with Bluetooth Low Energy devices continuously in a very short interval of time. Existing applications are also facing problems to establish a Bluetooth connection with Bluetooth Low Energy devices smoothly. The target of this res...

  7. A Connection between Gravitation and Electromagnetism

    OpenAIRE

    Snyder, D. M.

    2000-01-01

    It is argued that there is a connection between the fundamental forces of electromagnetism and gravitation. This connection occurs because of: 1) the fundamental significance of the finite and invariant velocity of light in inertial reference frames in the special theory, and 2) the reliance of the general theory of relativity upon the special theory of relativity locally in spacetime. The connection between the fundamental forces of electromagnetism and gravitation follows immediately from t...

  8. Conformal transformation of tetrads and spin connection

    CERN Document Server

    Chakrabarty, Subhasish

    2016-01-01

    We investigate the conformal transformation of vierbein-Einstein-Palatini (VEP) action in terms of tetrads $e^I_\\mu$ and spin connection $A^{IJ}_\\mu$. The transformation of tetrads is obtained from that of the spacetime metric whereas that of the spin connection is not unique off-shell. When the connection can be completely expressed in terms of the tetrads, its transformation follows from that of the tetrads. We also construct the conformally invariant scalar field in the VEP formalism.

  9. Notes on sentential connections (predominantly) in Portuguese

    OpenAIRE

    Peres, João Andrade; Mascarenhas, Salvador

    2005-01-01

    In this article, we discuss a general typology of inter-sentential connections involving an explicit connective, including but no limited to subordination and coordination. In the first section, we briefly describe a proposal on the topic by one of the authors, which is taken as a point of departure. In the following section, we analyse step by step the diverse levels of organization of the connection system, ending in an overall picture and a suggestion of further additions related to hither...

  10. The neural correlates of social connection

    OpenAIRE

    Hutcherson, Cendri A.; Seppala, Emma M.; James J Gross

    2015-01-01

    Cultivating social connection has long been a goal of psychology, philosophy, religion, and public policy. Yet the psychological and neural responses that accompany a feeling of connection to others remain unclear. In the present study, we used functional neuroimaging to shed light on the neural correlates of self- and other-focused processes during the successful self-generation of feelings of social connection. To do this, we used a trait judgment task to localize functional activation rela...

  11. Brain connectivity analysis: a short survey

    OpenAIRE

    Lang, E. W.; A. M. Tomé; Keck, I. R.; J. M. Górriz-Sáez; Puntonet, C. G.

    2012-01-01

    This short survey the reviews recent literature on brain connectivity studies. It encompasses all forms of static and dynamic connectivity whether anatomical, functional, or effective. The last decade has seen an ever increasing number of studies devoted to deduce functional or effective connectivity, mostly from functional neuroimaging experiments. Resting state conditions have become a dominant experimental paradigm, and a number of resting state networks, among them the prominent default m...

  12. Drill pipe threaded nipple connection design development

    Science.gov (United States)

    Saruev, A. L.; Saruev, L. A.; Vasenin, S. S.

    2015-11-01

    The paper presents the analysis of the behavior of the drill pipe nipple connection under the additional load generated by power pulses. The strain wave propagation through the nipple thread connection of drill pipes to the bottomhole is studied in this paper. The improved design of the nipple thread connection is suggested using the obtained experimental and theoretical data. The suggested connection design allows not only the efficient transmission of strain wave energy to a drill bit but also the automation of making-up and breaking-out drill pipes.

  13. On Metrizability of Invariant Affine Connections

    CERN Document Server

    Tanaka, Erico

    2011-01-01

    The metrizability problem for a symmetric affine connection on a manifold, invariant with respect to a group of diffeomorphisms G, is considered. We say that the connection is G-metrizable, if it is expressible as the Levi-Civita connection of a G-invariant metric field. In this paper we analyze the G-metrizability equations for the rotation group G = SO(3), acting canonically on three- and four-dimensional Euclidean spaces. We show that the property of the connection to be SO(3)-invariant allows us to find complete explicit description of all solutions of the SO(3)-metrizability equations.

  14. Essential Connectivity Areas - CEHC, (Raster) [ds620

    Data.gov (United States)

    California Department of Resources — The California Department of Transportation (Caltrans) and California Department of Fish and Game (CDFG) commissioned the California Essential Habitat Connectivity...

  15. Connection Skeleton Extraction Based on Contour Connectedness

    Institute of Scientific and Technical Information of China (English)

    CHEN Mang; LIU Yun-cai

    2008-01-01

    A stable skeleton is very important to some applications such as vehicle navigation, object represent and pattern recognition. The connection skeleton is just one that not only can be computed stably but also can figure the connectivity structure of contour. A new method named continuous connectivity detection and a new model named approximate regular polygon (ARP) were proposed for connection skeleton extraction. Both the method and the model were tested by the real maps of road network including flyovers, interchanges and other common object contours. Satisfactory results were obtained.

  16. Kähler Quantization and Hitchin Connections

    DEFF Research Database (Denmark)

    Leth Gammelgaard, Niels

    symplectic manifold, and we extend his construction to geometric quantization with metaplectic correction. We calculate the curvature and prove that the connection is projectively flat if the symplectic manifold does not allow holomorphic vector fields. Furthermore, we prove that the Hitchin connection is...... asymptotically unitary to any order. Finally, based on ideas by Andersen, we study a formal analog of the Hitchin connection for deformation quantization, and we give explicit formulas for the formal Hitchin connections associated with the ordinary and metaplectic Berezin-Teoplitz star products....

  17. Connectivity Analysis of Cyclically Balanced Fuzzy Graphs

    Directory of Open Access Journals (Sweden)

    N. Jicy

    2015-06-01

    Full Text Available The concepts of connectivity and cycle connectivity play an important role in fuzzy graph theory. In this article, cyclic cutvertices, cyclic bridges and cyclically balanced fuzzy graphs are discussed. It is proved that a vertex in a fuzzy graph is a cyclic cutvertex if and only if it is a common vertex of all strong cycles with maximum strength. Also a cyclic cutvertex cannot be a fuzzy endvertex in a fuzzy graph. A characterization of cyclically balanced fuzzy graphs is obtained. Cyclic vertex connectivity and cyclic edge connectivity of fuzzy graphs are also discussed.

  18. Further advances in deepwater flowline connection technology

    Energy Technology Data Exchange (ETDEWEB)

    Moreira, J.R.; Cerqueira, M.B.; Silva, G.J.R.; Nagle, R.J.

    1996-12-31

    A diverless guidelineless flowline connection system, the so-called direct vertical connection, has been developed, and tested, which sharply decreases connection time, while allowing the lay-vessel itself to perform both flowline ends connections, thus dispensing with the use of auxiliary tools and making the operation more cost effective and reliable. This system has been designed to overcome problems associated with conventional pull-in systems, the lay-away method, ROV assisted pull-in systems and conventional vertical connections. The former have already been successfully used in Marlim field, in 25 wells located at water depths ranging from 740 m to 980 m. The direct vertical connection can now be considered a field proven method. Five import flowline connections have already been successfully performed in Albacora field manifold, installed at 620 m water depth. From now on, based on the excellent results achieved from those installations and previous tests, all deepwater Brazilian subsea trees and manifolds will be designed for direct vertical connection. Sixty six trees and six manifolds incorporating the direct vertical connection system are presently under fabrication in Brazil.

  19. Aircraft Mechanics: Scope and Sequence.

    Science.gov (United States)

    Nashville - Davidson County Metropolitan Public Schools, TN.

    This scope and sequence guide, developed for an aircraft mechanics vocational education program, represents an initial step in the development of a systemwide articulated curriculum sequence for all vocational programs within the Metropolitan Nashville Public School System. It was developed as a result of needs expressed by teachers, parents, and…

  20. AMPLIFICATION OF RIBOSOMAL RNA SEQUENCES

    Science.gov (United States)

    This book chapter offers an overview of the use of ribosomal RNA sequences. A history of the technology traces the evolution of techniques to measure bacterial phylogenetic relationships and recent advances in obtaining rRNA sequence information. The manual also describes procedu...

  1. PERIODIC COMPLEMENTARY BINARY SEQUENCE PAIRS

    Institute of Scientific and Technical Information of China (English)

    XuChengqian; ZhaoXiaoqun

    2002-01-01

    A new set of binary sequences-Periodic Complementary Binary Sequence Pair (PCSP)is proposed .A new class of block design-Difference Family Pair (DFP)is also proposed .The relationship between PCSP and DFP,the properties and exising conditions of PCSP and the recursive constructions for PCSP are given.

  2. PERIODIC COMPLEMENTARY BINARY SEQUENCE PAIRS

    Institute of Scientific and Technical Information of China (English)

    Xu Chengqian; Zhao Xiaoqun

    2002-01-01

    A new set of binary sequences-Periodic Complementary Binary Sequence Pair (PCSP) is proposed. A new class of block design-Difference Family Pair (DFP) is also proposed.The relationship between PCSP and DFP, the properties and existing conditions of PCSP and the recursive constructions for PCSP are given.

  3. Finite extensions of Bessel sequences

    OpenAIRE

    Bakić, Damir; Berić, Tomislav

    2015-01-01

    The paper studies finite extensions of Bessel sequences in infinite-dimensional Hilbert spaces. We provide a characterization of Bessel sequences that can be extended to frames by adding finitely many vectors. We also characterize frames that can be converted to Parseval frames by finite-dimensional perturbations. Finally, some results on excesses of frames and near-Riesz bases are derived.

  4. Rapid Diagnostics of Onboard Sequences

    Science.gov (United States)

    Starbird, Thomas W.; Morris, John R.; Shams, Khawaja S.; Maimone, Mark W.

    2012-01-01

    Keeping track of sequences onboard a spacecraft is challenging. When reviewing Event Verification Records (EVRs) of sequence executions on the Mars Exploration Rover (MER), operators often found themselves wondering which version of a named sequence the EVR corresponded to. The lack of this information drastically impacts the operators diagnostic capabilities as well as their situational awareness with respect to the commands the spacecraft has executed, since the EVRs do not provide argument values or explanatory comments. Having this information immediately available can be instrumental in diagnosing critical events and can significantly enhance the overall safety of the spacecraft. This software provides auditing capability that can eliminate that uncertainty while diagnosing critical conditions. Furthermore, the Restful interface provides a simple way for sequencing tools to automatically retrieve binary compiled sequence SCMFs (Space Command Message Files) on demand. It also enables developers to change the underlying database, while maintaining the same interface to the existing applications. The logging capabilities are also beneficial to operators when they are trying to recall how they solved a similar problem many days ago: this software enables automatic recovery of SCMF and RML (Robot Markup Language) sequence files directly from the command EVRs, eliminating the need for people to find and validate the corresponding sequences. To address the lack of auditing capability for sequences onboard a spacecraft during earlier missions, extensive logging support was added on the Mars Science Laboratory (MSL) sequencing server. This server is responsible for generating all MSL binary SCMFs from RML input sequences. The sequencing server logs every SCMF it generates into a MySQL database, as well as the high-level RML file and dictionary name inputs used to create the SCMF. The SCMF is then indexed by a hash value that is automatically included in all command

  5. Spatiotemporal correlations of aftershock sequences

    CERN Document Server

    Peixoto, Tiago P; Davidsen, Jörn

    2010-01-01

    Aftershock sequences are of particular interest in seismic research since they may condition seismic activity in a given region over long time spans. While they are typically identified with periods of enhanced seismic activity after a large earthquake as characterized by the Omori law, our knowledge of the spatiotemporal correlations between events in an aftershock sequence is limited. Here, we study the spatiotemporal correlations of two aftershock sequences form California (Parkfield and Hector Mine) using the recently introduced concept of "recurrent" events. We find that both sequences have very similar properties and that most of them are captured by the space-time epidemic-type aftershock sequence (ETAS) model if one takes into account catalog incompleteness. However, the stochastic model does not capture the spatiotemporal correlations leading to the observed structure of seismicity on small spatial scales.

  6. Modelling and Simulation of VSC-HVDC Connection for Wind Power Plants

    DEFF Research Database (Denmark)

    Chaudhary, Sanjay Kumar; Teodorescu, Remus; Rodriguez, Pedro;

    2009-01-01

    step-up transformers. VSC's are modelled using ideal IGBT switches supplied by the gate pulses from their respective controllers. A sequence of operation has been simulated from the starting up of the VSC-HVDC transmission, energizing the offshore grid and subsequent synchronization of the individual......This paper describes the modelling and simulation of offshore wind power plants (WPP) connected to the onshore power system grid by VSC based HVDC transmission. Offshore wind power plant is modelled with several wind turbine generators connected to two separate collector buses with their own plant...

  7. Multilocus sequence typing of total-genome-sequenced bacteria.

    Science.gov (United States)

    Larsen, Mette V; Cosentino, Salvatore; Rasmussen, Simon; Friis, Carsten; Hasman, Henrik; Marvig, Rasmus Lykke; Jelsbak, Lars; Sicheritz-Pontén, Thomas; Ussery, David W; Aarestrup, Frank M; Lund, Ole

    2012-04-01

    Accurate strain identification is essential for anyone working with bacteria. For many species, multilocus sequence typing (MLST) is considered the "gold standard" of typing, but it is traditionally performed in an expensive and time-consuming manner. As the costs of whole-genome sequencing (WGS) continue to decline, it becomes increasingly available to scientists and routine diagnostic laboratories. Currently, the cost is below that of traditional MLST. The new challenges will be how to extract the relevant information from the large amount of data so as to allow for comparison over time and between laboratories. Ideally, this information should also allow for comparison to historical data. We developed a Web-based method for MLST of 66 bacterial species based on WGS data. As input, the method uses short sequence reads from four sequencing platforms or preassembled genomes. Updates from the MLST databases are downloaded monthly, and the best-matching MLST alleles of the specified MLST scheme are found using a BLAST-based ranking method. The sequence type is then determined by the combination of alleles identified. The method was tested on preassembled genomes from 336 isolates covering 56 MLST schemes, on short sequence reads from 387 isolates covering 10 schemes, and on a small test set of short sequence reads from 29 isolates for which the sequence type had been determined by traditional methods. The method presented here enables investigators to determine the sequence types of their isolates on the basis of WGS data. This method is publicly available at www.cbs.dtu.dk/services/MLST. PMID:22238442

  8. The solar-coffee connection

    Energy Technology Data Exchange (ETDEWEB)

    Wright, G.

    2000-04-01

    Coffee connoisseurs, when they quaff a cup of coffee or enjoy a jug of joe, don't generally consider the costs to the environment of their favorite beverage. But the fact is that traditional coffee production is hard on the environment, exacting a toll on the native forests and waterways of Central America and on the migratory birds of the western hemisphere. Coffee growing is the second greatest cause of rainforest destruction after cattle ranching, because a lot of trees are cut down to dry the freshly-picked coffee crop. But espresso-sipping environmentalists and an eco-conscious Joe Public can take comfort in a promising new connection between solar energy and rainforest-friendly coffee--solar-dried coffee. And they can take pleasure in it too, because solar-dried coffee, according to virtually everyone who tries it, is the best-tasting coffee made. Considering that coffee is the second most-traded commodity next to oil, and the second most popular beverage in the world next to water, consumed by billions of people, any new process that reduces the environmental damage occasioned by coffee-growing and processing is significant.

  9. QED on the connection machine

    International Nuclear Information System (INIS)

    Physicists believe that the world is described in terms of gauge theories. A popular technique for investigating these theories is to discretize them onto a lattice and simulate numerically by a computer, yielding so-called lattice gauge theory. Such computations require at least 1014 floating-point operations, necessitating the use of advanced architecture supercomputers such as the Connection Machine. Currently the most important gauge theory to be solved is that describing the sub-nuclear world of high energy physics: quantum chromo-dynamics (QCD). The simplest example of a gauge theory is Quantum electro-dynamics (QED), the theory which describes the interaction of electrons and photons. Simulation of QCD requires computer software very similar to that for the simpler QED problem. The authors' current QED code achieves a computational rate of 1.6 million lattice site updates per second for a Monte Carlo algorithm, and 7.4 million site updates per second for a microcanonical algorithm. The estimate performance for a Monte Carlo QCD code is 200,000 site updates per second (or 5.6 Gflops/sec)

  10. IMPROVED NETWORK CONNECTIVITY IN MANETS

    Directory of Open Access Journals (Sweden)

    B R Sujatha

    2009-10-01

    Full Text Available The growth in wireless communication technologies has resulted in a considerable amount ofattention given to mobile adhoc networks. All mobile hosts in an adhoc network are embedded withpacket forwarding capabilities. It is decentralized and is independent of infrastructure. Since mobilehosts in an adhoc network usually move freely, the topology of the network changes dynamically anddisconnection occurs frequently. These characteristics require the routing protocols to find analternative path towards the destination for data transfer. The existing on-demand routing protocolsdoes the alternative path establishment only after the disconnection of links in the existing path. Thedata sent by the source during alternate path establishment period will be lost leading to incompletedata transfer. The network traffic will therefore increase considerably. This problem can be overcomeby establishing an alternative path when the existing path is more likely to be broken, by sending awarning message to the source indicating the likelihood of disconnection. In this paper an attempt hasbeen made to analyze a protocol that improves the network connectivity by preempting the alternativepath before the existing link gets failed by monitoring the signal strength and ‘age of the path’.

  11. Tweaking synchronization by connectivity modifications

    Science.gov (United States)

    Schultz, Paul; Peron, Thomas; Eroglu, Deniz; Stemler, Thomas; Ramírez Ávila, Gonzalo Marcelo; Rodrigues, Francisco A.; Kurths, Jürgen

    2016-06-01

    Natural and man-made networks often possess locally treelike substructures. Taking such tree networks as our starting point, we show how the addition of links changes the synchronization properties of the network. We focus on two different methods of link addition. The first method adds single links that create cycles of a well-defined length. Following a topological approach, we introduce cycles of varying length and analyze how this feature, as well as the position in the network, alters the synchronous behavior. We show that in particular short cycles can lead to a maximum change of the Laplacian's eigenvalue spectrum, dictating the synchronization properties of such networks. The second method connects a certain proportion of the initially unconnected nodes. We simulate dynamical systems on these network topologies, with the nodes' local dynamics being either discrete or continuous. Here our main result is that a certain number of additional links, with the relative position in the network being crucial, can be beneficial to ensure stable synchronization.

  12. Cross-Connections of Chemistry

    Science.gov (United States)

    Mason, Diana S.

    2002-02-01

    We are in desperate need of qualified chemistry teachers. Are the teachers who have biology, physics, or some psychology degrees qualified to teach chemistry? Have they taken enough chemistry to be prepared to teach outside their degree field? If remediation is necessary, what courses should be required? Attracting pre-service science teachers to the study of pure chemistry is not an easy task when more attractive course offerings are available. Maybe we should concentrate on cross-training in-service teachers by providing appropriate graduate courses to encourage them and bring them into the family. Many teachers with degrees outside the traditional discipline of chemistry have adequate backgrounds in the applications of chemistry. Requiring hours of undergraduate education before they enter the hallowed halls of the chemistry building as graduate students only serves to discourage a large segment of in-service teachers who wish to broaden their perspective. The National Science Education Standards make a compelling argument for connecting and integrating science courses for practicing teachers (3). We are at the crossroads. At a time when we so desperately need qualified chemistry teachers, shouldn't we be more open in our graduate teaching programs, inviting those with degrees in other disciplines to start on a graduate degree without insisting on undergraduate or survey coursework first? Many potential chemical education graduate students have a background in chemistry--it is just known by another name.

  13. Learning Quantitative Sequence-Function Relationships from Massively Parallel Experiments

    Science.gov (United States)

    Atwal, Gurinder S.; Kinney, Justin B.

    2016-03-01

    A fundamental aspect of biological information processing is the ubiquity of sequence-function relationships—functions that map the sequence of DNA, RNA, or protein to a biochemically relevant activity. Most sequence-function relationships in biology are quantitative, but only recently have experimental techniques for effectively measuring these relationships been developed. The advent of such "massively parallel" experiments presents an exciting opportunity for the concepts and methods of statistical physics to inform the study of biological systems. After reviewing these recent experimental advances, we focus on the problem of how to infer parametric models of sequence-function relationships from the data produced by these experiments. Specifically, we retrace and extend recent theoretical work showing that inference based on mutual information, not the standard likelihood-based approach, is often necessary for accurately learning the parameters of these models. Closely connected with this result is the emergence of "diffeomorphic modes"—directions in parameter space that are far less constrained by data than likelihood-based inference would suggest. Analogous to Goldstone modes in physics, diffeomorphic modes arise from an arbitrarily broken symmetry of the inference problem. An analytically tractable model of a massively parallel experiment is then described, providing an explicit demonstration of these fundamental aspects of statistical inference. This paper concludes with an outlook on the theoretical and computational challenges currently facing studies of quantitative sequence-function relationships.

  14. Regularities in the E.coli promoters composition in connection with the DNA strands interaction and promoter activity

    Institute of Scientific and Technical Information of China (English)

    BEREZHNOY Andrey Yu; SHCKORBATOV Yuriy G.; HISANORI Kiryu

    2006-01-01

    The energy of interaction between DNA strands in promoters is of great functional importance. Visualization of the energy of DNA strands distribution in promoter sequences was achieved. The separation of promoters in groups by their energetic properties enables evaluation of the dependence of promoter strength on the energetic properties. The analysis of groups (clusters)of promoters distributed by the energy of DNA strands interaction in -55, -35, -10 and +6 sequences indicates their connection with the transcriptional activity.

  15. Cortical attractor network dynamics with diluted connectivity.

    Science.gov (United States)

    Rolls, Edmund T; Webb, Tristan J

    2012-01-24

    The connectivity of the cerebral cortex is diluted, with the probability of excitatory connections between even nearby pyramidal cells rarely more than 0.1, and in the hippocampus 0.04. To investigate the extent to which this diluted connectivity affects the dynamics of attractor networks in the cerebral cortex, we simulated an integrate-and-fire attractor network taking decisions between competing inputs with diluted connectivity of 0.25 or 0.1, and with the same number of synaptic connections per neuron for the recurrent collateral synapses within an attractor population as for full connectivity. The results indicated that there was less spiking-related noise with the diluted connectivity in that the stability of the network when in the spontaneous state of firing increased, and the accuracy of the correct decisions increased. The decision times were a little slower with diluted than with complete connectivity. Given that the capacity of the network is set by the number of recurrent collateral synaptic connections per neuron, on which there is a biological limit, the findings indicate that the stability of cortical networks, and the accuracy of their correct decisions or memory recall operations, can be increased by utilizing diluted connectivity and correspondingly increasing the number of neurons in the network, with little impact on the speed of processing of the cortex. Thus diluted connectivity can decrease cortical spiking-related noise. In addition, we show that the Fano factor for the trial-to-trial variability of the neuronal firing decreases from the spontaneous firing state value when the attractor network makes a decision. This article is part of a Special Issue entitled "Neural Coding". PMID:21875702

  16. Role of connecting loop I in catalysis and allosteric regulation of human glucokinase.

    Science.gov (United States)

    Martinez, Juliana A; Larion, Mioara; Conejo, Maria S; Porter, Carol M; Miller, Brian G

    2014-07-01

    Glucokinase (GCK, hexokinase IV) is a monomeric enzyme with a single glucose binding site that displays steady-state kinetic cooperativity, a functional characteristic that affords allosteric regulation of GCK activity. Structural evidence suggests that connecting loop I, comprised of residues 47-71, facilitates cooperativity by dictating the rate and scope of motions between the large and small domains of GCK. Here we investigate the impact of varying the length and amino acid sequence of connecting loop I upon GCK cooperativity. We find that sequential, single amino acid deletions from the C-terminus of connecting loop I cause systematic decreases in cooperativity. Deleting up to two loop residues leaves the kcat value unchanged; however, removing three or more residues reduces kcat by 1000-fold. In contrast, the glucose K0.5 and KD values are unaffected by shortening the connecting loop by up to six residues. Substituting alanine or glycine for proline-66, which adopts a cis conformation in some GCK crystal structures, does not alter cooperativity, indicating that cis/trans isomerization of this loop residue does not govern slow conformational reorganizations linked to hysteresis. Replacing connecting loop I with the corresponding loop sequence from the catalytic domain of the noncooperative isozyme human hexokinase I (HK-I) eliminates cooperativity without impacting the kcat and glucose K0.5 values. Our results indicate that catalytic turnover requires a minimal length of connecting loop I, whereas the loop has little impact upon the binding affinity of GCK for glucose. We propose a model in which the primary structure of connecting loop I affects cooperativity by influencing conformational dynamics, without altering the equilibrium distribution of GCK conformations. PMID:24723372

  17. Default processing of event sequences.

    Science.gov (United States)

    Hymel, Alicia; Levin, Daniel T; Baker, Lewis J

    2016-02-01

    In a wide range of circumstances, it is important to perceive and represent the sequence of events. For example, sequence perception is necessary to learn statistical contingencies between events, and to generate predictions about events when segmenting actions. However, viewer's awareness of event sequence is rarely tested, and at least some means of encoding event sequence are likely to be resource-intensive. Therefore, previous research may have overestimated the degree to which viewers are aware of specific event sequences. In the experiments reported here, we tested viewers' ability to detect anomalies during visual event sequences. Participants viewed videos containing events that either did or did not contain an out-of-order action. Participants were unable to consistently detect the misordered events, and performance on the task decreased significantly to very low levels when performing a secondary task. In addition, participants almost never detected misorderings in an incidental version of the task, and performance increased when videos ended immediately after the misordering, We argue that these results demonstrate that viewers can effectively perceive the elements of events, but do not consistently test their expectations about the specific sequence of natural events unless bidden to do so by task-specific demands. (PsycINFO Database Record PMID:26348070

  18. Variational Sequences, Representation Sequences and Applications in Physics

    OpenAIRE

    Palese, Marcella; Rossi, Olga; Winterroth, Ekkehart; Musilová, Jana

    2015-01-01

    This paper is a review containing new original results on the finite order variational sequence and its different representations with emphasis on applications in the theory of variational symmetries and conservation laws in physics.

  19. Quick-Connect Heavy-Duty Fastener

    Science.gov (United States)

    Moore, D. M.

    1986-01-01

    Attaching device combines fast connection and disconnection with high strength. T-shaped stud engages groove in receptacle after one-quarter turn. Further turning tightens nut on receptacle. Like quarter-turn attaching devices, connected and disconnected quickly. Like threaded devices, adjusted to desired preload, withstand high loads, and accommodate wide range of grip lengths.

  20. Connect the Book. George Washington's Teeth

    Science.gov (United States)

    Brodie, Carolyn S.

    2005-01-01

    February celebrates both National Children's Dental Health Month and President's Day (February 21), so this month's "Connect the Book" column features a book with connections to both events. George Washington, the first President of the United States (1789-1797) and known as the "Father of Our Country," had a serious dental health problem that…

  1. Water Treatment Technology - Cross-Connections.

    Science.gov (United States)

    Ross-Harrington, Melinda; Kincaid, G. David

    One of twelve water treatment technology units, this student manual on cross connections provides instructional materials for two competencies. (The twelve units are designed for a continuing education training course for public water supply operators.) The competencies focus on cross connections terminology and control devices. For each…

  2. Supervision, Staff Development, and Evaluation Connections.

    Science.gov (United States)

    McQuarrie, Frank O.; Wood, Fred H.

    1991-01-01

    Examines the relationship between supervision, staff development, and teacher evaluation, discussing why educators must strive to make connections among the three, identifying important misunderstandings about them, and describing the purposes of each process and the similarities, differences, and connections between them. Together, they can be…

  3. Are we connected? : Ports in Global Networks

    NARCIS (Netherlands)

    R.A. Zuidwijk (Rob)

    2015-01-01

    markdownabstractAbstract Global supply chains are built on organizational, information, and logistics networks. Ports are connected via these networks and also need to connect these networks. Synchromodality is an innovative concept for container transportation, and the port plays an important ro

  4. Natural Connections on Riemannian Product Manifolds

    OpenAIRE

    Gribacheva, Dobrinka

    2011-01-01

    A Riemannian almost product manifold with integrable almost product structure is called a Riemannian product manifold. In the present paper the natural connections on such manifolds are studied, i.e. the linear connections preserving the almost product structure and the Riemannian metric.

  5. MedlinePlus Connect: How it Works

    Science.gov (United States)

    ... page for more examples of Web Application response pages. Web Service The MedlinePlus Connect REST-based Web service ... to the user. Visit the Web Service Demonstration page for more examples of Web Service response pages. More Information How MedlinePlus Connect ...

  6. Cartan normal conformal connections from differential equations

    International Nuclear Information System (INIS)

    We explore and show a natural relationship between all third-order ordinary differential equations that possess a vanishing Wunschmann invariant, with conformal metrics on 3-manifolds and Cartan's normal O(3, 2) conformal connections. The generalization to pairs of second-order PDEs and their relationship to Cartan's normal O(4, 2) conformal connections on four-dimensional manifolds is discussed

  7. Connecting Functions in Geometry and Algebra

    Science.gov (United States)

    Steketee, Scott; Scher, Daniel

    2016-01-01

    One goal of a mathematics education is that students make significant connections among different branches of mathematics. Connections--such as those between arithmetic and algebra, between two-dimensional and three-dimensional geometry, between compass-and-straight-edge constructions and transformations, and between calculus and analytic…

  8. 77 FR 52616 - Connect America Fund

    Science.gov (United States)

    2012-08-30

    ... remote areas of Alaska. II. Background 2. In the USF/ICC Transformation Order, 76 FR 73830 (November 29.... 01-92, 96-45; WT Docket No. 10-208; DA 12-1155] Connect America Fund AGENCY: Federal Communications... certain rules relating to Phase I of the Connect America Fund. Commission staff have received...

  9. Physical Science Connected Classrooms: Case Studies

    Science.gov (United States)

    Irving, Karen; Sanalan, Vehbi; Shirley, Melissa

    2009-01-01

    Case-study descriptions of secondary and middle school classrooms in diverse contexts provide examples of how teachers implement connected classroom technology to facilitate formative assessment in science instruction. Connected classroom technology refers to a networked system of handheld devices designed for classroom use. Teachers were…

  10. Building Cohesion in Positively Connected Exchange Networks

    Science.gov (United States)

    Schaefer, David R.; Kornienko, Olga

    2009-01-01

    This research investigates the process through which individuals build cohesive relationships in positively connected exchange relations. Positive connections exist any time exchange in one relation must precede exchange in another. Such situations arise through gatekeeping, in generalized exchange contexts, and when resources diffuse across a…

  11. Making the Chromosome-Gene-Protein Connection.

    Science.gov (United States)

    Mulvihill, Charlotte

    1996-01-01

    Presents an exercise that demonstrates the chromosome-gene-protein connection using sickle-cell anemia, a genetic disease with a well-characterized molecular basis. Involves connecting changes in DNA to protein outcomes and tying them into the next generation by meiosis and gamete formation with genetic crosses. Motivates students to integrate…

  12. The Matrix Connection: Fibonacci and Inductive Proof

    Science.gov (United States)

    Veenstra, Tamara B.; Miller, Catherine M.

    2006-01-01

    This article presents several activities (some involving graphing calculators) designed to guide students to discover several interesting properties of Fibonacci numbers. Then, we explore interesting connections between Fibonacci numbers and matrices; using this connection and induction we prove divisibility properties of Fibonacci numbers.

  13. Free cumulants and enumeration of connected partitions

    OpenAIRE

    Lehner, Franz

    2001-01-01

    A combinatorial formula is derived which expresses free cumulants in terms of classical comulants. As a corollary, we give a combinatorial interpretation of free cumulants of classical distributions, notably Gaussian and Poisson distributions. The latter count connected pairings and connected set partitions respectively. The proof relies on Moebius inversion on the partition lattice.

  14. Voltage Quality of Grid Connected Wind Turbines

    DEFF Research Database (Denmark)

    Chen, Zhe; Blaabjerg, Frede; Sun, Tao

    Grid connected wind turbines may cause quality problems, such as voltage variation and flicker. This paper discusses the voltage variation and flicker emission of grid connected wind turbines with doubly-fed induction generators. A method to compensate flicker by using a voltage source converter...

  15. A Random Walk: Stumbling across Connections

    Science.gov (United States)

    Wasserman, Nicholas H.

    2015-01-01

    Finding and designing tasks that allow for students to make connections among mathematical ideas is important for mathematics educators. One such task, which affords students the opportunity to make connections and engage with significant mathematical ideas through a variety of problem-solving approaches, is described in this article. Three…

  16. Connecting multimodality in human communication

    Directory of Open Access Journals (Sweden)

    Christina eRegenbogen

    2013-11-01

    Full Text Available A successful reciprocal evaluation of social signals serves as a prerequisite for social coherence and empathy. In a previous fMRI study we studied naturalistic communication situations by presenting video clips to our participants and recording their behavioral responses regarding empathy and its components. In two conditions, all three channels transported congruent emotional or neutral information, respectively. Three conditions selectively presented two emotional channels and one neutral channel and were thus bimodally emotional. We reported channel-specific emotional contributions in modality-related areas, elicited by dynamic video clips with varying combinations of emotionality in facial expressions, prosody, and speech content. However, to better understand the underlying mechanisms accompanying a naturalistically displayed human social interaction in some key regions that presumably serve as specific processing hubs for facial expressions, prosody, and speech content, we pursued a reanalysis of the data. In addition to this specificity of these regions to information channels we demonstrated that they were also sensitive to variations of the respective emotional content.Here, we focused on two different descriptions of temporal characteristics within these three modality-related regions (right fusiform gyrus (FFG, left auditory cortex (AC, left angular gyrus (AG and left dorsomedial prefrontal cortex (dmPFC. By means of a finite impulse response (FIR analysis within each of the three regions we examined the post-stimulus time-courses as a description of the temporal characteristics of the BOLD response during the video clips. Second, effective connectivity between these areas and the left dmPFC was analyzed using dynamic causal modeling (DCM in order to describe condition-related modulatory influences on the coupling between these regions. The FIR analysis showed initially diminished activation in bimodally emotional conditions but

  17. Binary Sequences Generated by Sequences {n}, n = 1, 2, . .

    Czech Academy of Sciences Publication Activity Database

    Porubský, Štefan; Strauch, O.

    2010-01-01

    Roč. 77, 1-2 (2010), s. 139-170. ISSN 0033-3883 R&D Projects: GA ČR GA201/07/0191 Grant ostatní: VEGA(SK) 2/7138/27 Institutional research plan: CEZ:AV0Z10300504 Keywords : pseudorandomness * binary sequence * measures of pseudorandomness * well distribution * uniform distribution * correlation * Sturmian sequence Subject RIV: BA - General Mathematics Impact factor: 0.568, year: 2010

  18. Sequence to Sequence Learning for Optical Character Recognition

    OpenAIRE

    Sahu, Devendra Kumar; Sukhwani, Mohak

    2015-01-01

    We propose an end-to-end recurrent encoder-decoder based sequence learning approach for printed text Optical Character Recognition (OCR). In contrast to present day existing state-of-art OCR solution which uses connectionist temporal classification (CTC) output layer, our approach makes minimalistic assumptions on the structure and length of the sequence. We use a two step encoder-decoder approach -- (a) A recurrent encoder reads a variable length printed text word image and encodes it to a f...

  19. New Orthogonal Small Set Kasami Code Sequence

    OpenAIRE

    I Nyoman Pramaita; I G.A.G.K. Diafari; DNKP Negara; Agus Dharma

    2015-01-01

    In this paper, the authors propose the design of a new orthogonal small set Kasami code sequence generated using combination of non-orthogonal m-sequence and small set Kasami code sequence. The authors demonstrate that the proposed code sequence has comparable auto-correlation function (ACF), cross- correlation function (CCF), peak cross-correlation values with that of the existing orthogonal small set Kasami code sequence. Though the proposed code sequence has less code sequence sets than th...

  20. WebLogo: A Sequence Logo Generator

    OpenAIRE

    Crooks, G. E.; Hon, G; Chandonia, J. M.; Brenner, Steven E.

    2004-01-01

    WebLogo generates sequence logos, graphical representations of the patterns within a multiple sequence alignment. Sequence logos provide a richer and more precise description of sequence similarity than consensus sequences and can rapidly reveal significant features of the alignment otherwise difficult to perceive. Each logo consists of stacks of letters, one stack for each position in the sequence. The overall height of each stack indicates the sequence conservation at that position (measure...

  1. Connectivity: What is it good for?

    Science.gov (United States)

    Zimmermann, A.; Zimmermann, B.; Elsenbeer, H.

    2012-04-01

    In extensive areas of the Panama Canal watershed, large and frequent tropical storms hit clay-rich soils that feature a low saturated hydraulic conductivity at shallow depth. As a consequence, surface runoff occurs frequently, and extremely flashy catchment responses are common. Previous studies showed that in undisturbed forests of this region, overland flow tends to concentrate in flowlines which extend the channel network and therefore provide hydrological connectivity between hillslopes and streams. In this contribution we present our latest research which aims at explaining the development and dynamics of overland-flow connectivity and its impact on catchment runoff and suspended-sediment export. In an undisturbed headwater catchment we monitored on an event basis overland-flow occurrence in all flowlines and measured discharge and suspended-sediment concentration in several flowlines and at the catchment outlet. Under certain meteorological conditions all flowlines are connected to the channel network throughout their entire lengths. Because some flowlines originate near the catchment divide, extensive parts of the catchment are then hydrologically connected. It was for these high-connectivity situations that we measured the largest storm flows and sediment yields at the catchment outlet. Yet, both runoff volume and sediment yield varied up to an order of magnitude during the high-connectivity stage. This is because our connectivity data comprise just one feature of connectivity; that is, whether flow is connected or not. Hydrologic connectivity (at the soil surface), however, also entails other critical aspects such as the duration of a particular connectivity stage. Although promising, the effort required to monitor these aspects of connectivity is substantial. Moreover, it is not clear how such specific information can be transferred to other catchments. Therefore, besides more detailed investigations we advocate applying the established link between

  2. Directional connectivity in hydrology and ecology.

    Science.gov (United States)

    Larsen, Laurel G; Choi, Jungyill; Nungesser, Martha K; Harvey, Judson W

    2012-12-01

    Quantifying hydrologic and ecological connectivity has contributed to understanding transport and dispersal processes and assessing ecosystem degradation or restoration potential. However, there has been little synthesis across disciplines. The growing field of ecohydrology and recent recognition that loss of hydrologic connectivity is leading to a global decline in biodiversity underscore the need for a unified connectivity concept. One outstanding need is a way to quantify directional connectivity that is consistent, robust to variations in sampling, and transferable across scales or environmental settings. Understanding connectivity in a particular direction (e.g., streamwise, along or across gradient, between sources and sinks, along cardinal directions) provides critical information for predicting contaminant transport, planning conservation corridor design, and understanding how landscapes or hydroscapes respond to directional forces like wind or water flow. Here we synthesize progress on quantifying connectivity and develop a new strategy for evaluating directional connectivity that benefits from use of graph theory in ecology and percolation theory in hydrology. The directional connectivity index (DCI) is a graph-theory based, multiscale metric that is generalizable to a range of different structural and functional connectivity applications. It exhibits minimal sensitivity to image rotation or resolution within a given range and responds intuitively to progressive, unidirectional change. Further, it is linearly related to the integral connectivity scale length--a metric common in hydrology that correlates well with actual fluxes--but is less computationally challenging and more readily comparable across different landscapes. Connectivity-orientation curves (i.e., directional connectivity computed over a range of headings) provide a quantitative, information-dense representation of environmental structure that can be used for comparison or detection of

  3. A Criterion for Regular Sequences

    Indian Academy of Sciences (India)

    D P Patil; U Storch; J Stückrad

    2004-05-01

    Let be a commutative noetherian ring and $f_1,\\ldots,f_r \\in R$. In this article we give (cf. the Theorem in $\\mathcal{x}$2) a criterion for $f_1,\\ldots,f_r$ to be regular sequence for a finitely generated module over which strengthens and generalises a result in [2]. As an immediate consequence we deduce that if $V(g_1,\\ldots,g_r) \\subseteq V(f_1,\\ldots,f_r)$ in Spec and if $f_1,\\ldots,f_r$ is a regular sequence in , then $g_1,\\ldots,g_r$ is also a regular sequence in .

  4. Connectiveness and civility in online learning.

    Science.gov (United States)

    Rieck, Susan; Crouch, Laura

    2007-11-01

    As the classroom shifts from teacher-centered to learner-centered and from face-to-face to online, nursing faculty members are challenged to promote a sense of connectiveness and social interaction. Making connectiveness more elusive is the perception of rude, impolite, or unkind communication. The purpose of this descriptive-exploratory study was to examine perceptions of connectiveness and civility in online nursing courses. Ninety-six students in four nursing programs participated in the study. Strategies that promote connectiveness with peers are in-person activities whenever possible and discussion assignments that include social activities. Timely feedback when responding to questions and prompt grading are important for student-to-instructor connectiveness. Thirty-five percent of the students encountered rude or unkind communication with peers, and 60% reported incivility from instructors. Their suggestions for effective handling of rude communication included addressing the behavior privately, giving guidance about netiquette, and defining what constitutes rude behavior. PMID:17765016

  5. Spin connection and renormalization of teleparallel action

    Energy Technology Data Exchange (ETDEWEB)

    Krssak, Martin; Pereira, J.G. [Universidade Estadual Paulista, Instituto de Fisica Teorica, Sao Paulo, SP (Brazil)

    2015-11-15

    In general relativity, inertia and gravitation are both included in the Levi-Civita connection. As a consequence, the gravitational action, as well as the corresponding energy-momentum density, are in general contaminated by spurious contributions coming from inertial effects. In teleparallel gravity, on the other hand, because the spin connection represents inertial effects only, it is possible to separate inertia from gravitation. Relying on this property, it is shown that to each tetrad there is naturally associated a spin connection that locally removes the inertial effects from the action. The use of the appropriate spin connection can be viewed as a renormalization process in the sense that the computation of energy and momentum naturally yields the physically relevant values. A self-consistent method for solving field equations and determining the appropriate spin connection is presented. (orig.)

  6. Spin connection and renormalization of teleparallel action

    Energy Technology Data Exchange (ETDEWEB)

    Krššák, Martin, E-mail: krssak@ift.unesp.br; Pereira, J. G., E-mail: jpereira@ift.unesp.br [Instituto de Física Teórica, Universidade Estadual Paulista, R. Dr. Bento Teobaldo Ferraz 271, 01140-070, São Paulo, SP (Brazil)

    2015-10-31

    In general relativity, inertia and gravitation are both included in the Levi–Civita connection. As a consequence, the gravitational action, as well as the corresponding energy–momentum density, are in general contaminated by spurious contributions coming from inertial effects. In teleparallel gravity, on the other hand, because the spin connection represents inertial effects only, it is possible to separate inertia from gravitation. Relying on this property, it is shown that to each tetrad there is naturally associated a spin connection that locally removes the inertial effects from the action. The use of the appropriate spin connection can be viewed as a renormalization process in the sense that the computation of energy and momentum naturally yields the physically relevant values. A self-consistent method for solving field equations and determining the appropriate spin connection is presented.

  7. Connecting network properties of rapidly disseminating epizoonotics.

    Directory of Open Access Journals (Sweden)

    Ariel L Rivas

    Full Text Available To effectively control the geographical dissemination of infectious diseases, their properties need to be determined. To test that rapid microbial dispersal requires not only susceptible hosts but also a pre-existing, connecting network, we explored constructs meant to reveal the network properties associated with disease spread, which included the road structure.Using geo-temporal data collected from epizoonotics in which all hosts were susceptible (mammals infected by Foot-and-mouth disease virus, Uruguay, 2001; birds infected by Avian Influenza virus H5N1, Nigeria, 2006, two models were compared: 1 'connectivity', a model that integrated bio-physical concepts (the agent's transmission cycle, road topology into indicators designed to measure networks ('nodes' or infected sites with short- and long-range links, and 2 'contacts', which focused on infected individuals but did not assess connectivity.THE CONNECTIVITY MODEL SHOWED FIVE NETWORK PROPERTIES: 1 spatial aggregation of cases (disease clusters, 2 links among similar 'nodes' (assortativity, 3 simultaneous activation of similar nodes (synchronicity, 4 disease flows moving from highly to poorly connected nodes (directionality, and 5 a few nodes accounting for most cases (a "20:80" pattern. In both epizoonotics, 1 not all primary cases were connected but at least one primary case was connected, 2 highly connected, small areas (nodes accounted for most cases, 3 several classes of nodes were distinguished, and 4 the contact model, which assumed all primary cases were identical, captured half the number of cases identified by the connectivity model. When assessed together, the synchronicity and directionality properties explained when and where an infectious disease spreads.Geo-temporal constructs of Network Theory's nodes and links were retrospectively validated in rapidly disseminating infectious diseases. They distinguished classes of cases, nodes, and networks, generating information usable

  8. Modified Genetic Algorithm for DNA Sequence Assembly by Shotgun and Hybridization Sequencing Techniques

    OpenAIRE

    Prof.Narayan Kumar Sahu; Prof.Somesh Dewangan; Prof.Akash Wanjari

    2012-01-01

    Since the advent of rapid DNA sequencing methods in 1976, scientists have had the problem of inferring DNA sequences from sequenced fragments. Shotgun sequencing is a well-established biological and computational method used in practice. Many conventional algorithms for shotgun sequencing are based on the notion of pair wise fragment overlap. While shotgun sequencing infers a DNA sequence given the sequences of overlapping fragments, a recent and complementary method, called sequencing by hy...

  9. Dynamics about Neural Array with Simple Lateral Inhibitory Connections

    Institute of Scientific and Technical Information of China (English)

    Jian ZHUANG

    2011-01-01

    Lateral inhibitory effect is a well-known feature of information processing in neural systems.This paper presents a neural array model with simple lateral inhibitory connections.After detailed examining into the dynamics of this kind of neural array,the author gives the sufficient conditions under which the outputs of the network will tend to a special stable pattern called spatial sparse pattern in which if the output of a neuron is 1,then the outputs of the neurons in its neighborhood are 0.This ability called spatial sparse coding plays an important role in self-coding,self-organization and associative memory for patterns and pattern sequences.The main conclusions about the dynamics of this kind of neural array which is related to spatial sparse coding are introduced.

  10. A proof of Connelly's conjecture on 3-connected generic cycles

    DEFF Research Database (Denmark)

    Berg, Alex Rune; Jordán, Tibor

    2001-01-01

    A graph G = (V , E) is called a generic circuit if |E| = 2|V| - 2 and every X ⊂ V with 2 ≥ |X| ≥ |V| - 1 satisfies i(X) ≤ 2|X| - 3. Here i(X) denotes the number of edges induced by X. The operation extension subdivides an edge uw of a graph by a new vertex v and adds a new edge vz for some vertex z...... ≠ u, w. Connelly conjectured that every 3-connected generic circuit can be obtained from K4 by a sequence of extensions. We prove this conjecture. As a corollary, we also obtain a special case of a conjecture of Hendrickson on generically globally rigid graphs....

  11. Some results on homoclinic and heteroclinic connections in planar systems

    International Nuclear Information System (INIS)

    Consider a family of planar systems depending on two parameters (n, b) and having at most one limit cycle. Assume that the limit cycle disappears at some homoclinic (or heteroclinic) connection when Φ(n, b) = 0. We present a method that allows us to obtain a sequence of explicit algebraic lower and upper bounds for the bifurcation set Φ(n, b) = 0. The method is applied to two quadratic families, one of them is the well-known Bogdanov–Takens system. One of the results that we obtain for this system is the bifurcation curve for small values of n. We obtain the new three terms from purely algebraic calculations, without evaluating Melnikov functions

  12. On certain sequence spaces II

    Directory of Open Access Journals (Sweden)

    Hüsnü Kizmaz

    1995-12-01

    Full Text Available In this paper we define the space co(Δ={x=(xk/xk−kk−1→0(k→∞,xo=0,xk∈ℂ} and compute its duals (Continuous dual, β-dual and N-dual The aim of this paper is to give same results about matrix mapping of co(Δ into other sequence spaces including the convergent sequences, null sequences and bounded sequences.

  13. Guitars, Violins, and Geometric Sequences

    Science.gov (United States)

    Barger, Rita; Haehl, Martha

    2007-01-01

    This article describes middle school mathematics activities that relate measurement, ratios, and geometric sequences to finger positions or the placement of frets on stringed musical instruments. (Contains 2 figures and 2 tables.)

  14. Mining protein sequences for motifs.

    Science.gov (United States)

    Narasimhan, Giri; Bu, Changsong; Gao, Yuan; Wang, Xuning; Xu, Ning; Mathee, Kalai

    2002-01-01

    We use methods from Data Mining and Knowledge Discovery to design an algorithm for detecting motifs in protein sequences. The algorithm assumes that a motif is constituted by the presence of a "good" combination of residues in appropriate locations of the motif. The algorithm attempts to compile such good combinations into a "pattern dictionary" by processing an aligned training set of protein sequences. The dictionary is subsequently used to detect motifs in new protein sequences. Statistical significance of the detection results are ensured by statistically determining the various parameters of the algorithm. Based on this approach, we have implemented a program called GYM. The Helix-Turn-Helix motif was used as a model system on which to test our program. The program was also extended to detect Homeodomain motifs. The detection results for the two motifs compare favorably with existing programs. In addition, the GYM program provides a lot of useful information about a given protein sequence. PMID:12487759

  15. Sequencer for n accelerator facilities

    International Nuclear Information System (INIS)

    Operation of machines like telescopes and accelerators requires the efficient and reproducible execution of many different types of procedures. These machines consist of different sub-systems whose operation entail the execution of many tasks with strict compulsion on the order and duration of the execution. To improve operational reliability and efficiency, automated execution of procedures is required. Creation of a single robust sequencing application permits the streamlining of this process and offers many benefits. At the same time, a drive for greater efficiency, a tendency for more complex accelerator operations and a need to reduce the risk of 'operator error' have rendered these tools essential. This paper presents the design of Sequencer tool for Indian Accelerator facility. It sites an examples of such tools used at different international accelerator facilities. The features considered desirable in a good sequencer and a description of the tools created to aid in sequence construction and diagnosis are discussed. (author)

  16. On train track splitting sequences

    CERN Document Server

    Masur, Howard; Schleimer, Saul

    2010-01-01

    We show that the subsurface projection of a train track splitting sequence is an unparameterized quasi-geodesic in the curve complex of the subsurface. For the proof we introduce induced tracks, efficient position, and wide curves. This result is an important step in the proof that the disk complex is Gromov hyperbolic. As another application we show that train track sliding and splitting sequences give quasi-geodesics in the train track graph, generalizing a result of Hamenstaedt [Invent. Math.].

  17. Integrated sequence analysis. Final report

    International Nuclear Information System (INIS)

    The NKS/RAK subprojet 3 'integrated sequence analysis' (ISA) was formulated with the overall objective to develop and to test integrated methodologies in order to evaluate event sequences with significant human action contribution. The term 'methodology' denotes not only technical tools but also methods for integration of different scientific disciplines. In this report, we first discuss the background of ISA and the surveys made to map methods in different application fields, such as man machine system simulation software, human reliability analysis (HRA) and expert judgement. Specific event sequences were, after the surveys, selected for application and testing of a number of ISA methods. The event sequences discussed in the report were cold overpressure of BWR, shutdown LOCA of BWR, steam generator tube rupture of a PWR and BWR disturbed signal view in the control room after an external event. Different teams analysed these sequences by using different ISA and HRA methods. Two kinds of results were obtained from the ISA project: sequence specific and more general findings. The sequence specific results are discussed together with each sequence description. The general lessons are discussed under a separate chapter by using comparisons of different case studies. These lessons include areas ranging from plant safety management (design, procedures, instrumentation, operations, maintenance and safety practices) to methodological findings (ISA methodology, PSA,HRA, physical analyses, behavioural analyses and uncertainty assessment). Finally follows a discussion about the project and conclusions are presented. An interdisciplinary study of complex phenomena is a natural way to produce valuable and innovative results. This project came up with structured ways to perform ISA and managed to apply the in practice. The project also highlighted some areas where more work is needed. In the HRA work, development is required for the use of simulators and expert judgement as

  18. Sequence diversity and functional conformity

    OpenAIRE

    de Lange, Orlando

    2015-01-01

    At least four phylogenetically distinct groups of bacteria encode repeat proteins with the common ability to bind specific DNA sequences with a unique but conserved code. Each repeat binds a single DNA base, and specificity is determined by the amino acid residue at position 13 of each repeat. Repeats are typically 33-35 amino acids long. Comparing repeat sequences across all groups reveals that only three positions are hyper-conserved. Repeats are in most cases functionally compatible such t...

  19. Road Weather and Connected Vehicles

    Science.gov (United States)

    Pisano, P.; Boyce, B. C.

    2015-12-01

    On average, there are over 5.8 M vehicle crashes each year of which 23% are weather-related. Weather-related crashes are defined as those crashes that occur in adverse weather or on slick pavement. The vast majority of weather-related crashes happen on wet pavement (74%) and during rainfall (46%). Connected vehicle technologies hold the promise to transform road-weather management by providing improved road weather data in real time with greater temporal and geographic accuracy. This will dramatically expand the amount of data that can be used to assess, forecast, and address the impacts that weather has on roads, vehicles, and travelers. The use of vehicle-based measurements of the road and surrounding atmosphere with other, more traditional weather data sources, and create road and atmospheric hazard products for a variety of users. The broad availability of road weather data from mobile sources will vastly improve the ability to detect and forecast weather and road conditions, and will provide the capability to manage road-weather response on specific roadway links. The RWMP is currently demonstrating how weather, road conditions, and related vehicle data can be used for decision making through an innovative Integrated Mobile Observations project. FHWA is partnering with 3 DOTs (MN, MI, & NV) to pilot these applications. One is a mobile alerts application called the Motorists Advisories and Warnings (MAW) and a maintenance decision support application. These applications blend traditional weather information (e.g., radar, surface stations) with mobile vehicle data (e.g., temperature, brake status, wiper status) to determine current weather conditions. These weather conditions, and other road-travel-relevant information, are provided to users via web and phone applications. The MAW provides nowcasts and short-term forecasts out to 24 hours while the EMDSS application can provide forecasts up to 72 hours in advance. The three DOTs have placed readers and external

  20. Thread extraction for polyadic instruction sequences

    NARCIS (Netherlands)

    J.A. Bergstra; C.A. Middelburg

    2009-01-01

    Instruction sequences are often fragmented. An important reason for instruction sequence fragmentation is that the execution architecture at hand to execute instruction sequences sets bounds to the size of instruction sequences. In this paper, we study instruction sequences that have been split into

  1. Optimization of sequence alignment for simple sequence repeat regions

    Directory of Open Access Journals (Sweden)

    Ogbonnaya Francis C

    2011-07-01

    Full Text Available Abstract Background Microsatellites, or simple sequence repeats (SSRs, are tandemly repeated DNA sequences, including tandem copies of specific sequences no longer than six bases, that are distributed in the genome. SSR has been used as a molecular marker because it is easy to detect and is used in a range of applications, including genetic diversity, genome mapping, and marker assisted selection. It is also very mutable because of slipping in the DNA polymerase during DNA replication. This unique mutation increases the insertion/deletion (INDELs mutation frequency to a high ratio - more than other types of molecular markers such as single nucleotide polymorphism (SNPs. SNPs are more frequent than INDELs. Therefore, all designed algorithms for sequence alignment fit the vast majority of the genomic sequence without considering microsatellite regions, as unique sequences that require special consideration. The old algorithm is limited in its application because there are many overlaps between different repeat units which result in false evolutionary relationships. Findings To overcome the limitation of the aligning algorithm when dealing with SSR loci, a new algorithm was developed using PERL script with a Tk graphical interface. This program is based on aligning sequences after determining the repeated units first, and the last SSR nucleotides positions. This results in a shifting process according to the inserted repeated unit type. When studying the phylogenic relations before and after applying the new algorithm, many differences in the trees were obtained by increasing the SSR length and complexity. However, less distance between different linage had been observed after applying the new algorithm. Conclusions The new algorithm produces better estimates for aligning SSR loci because it reflects more reliable evolutionary relations between different linages. It reduces overlapping during SSR alignment, which results in a more realistic

  2. Intrinsic connections and architectonics of posterior parietal cortex in the rhesus monkey

    International Nuclear Information System (INIS)

    By means of autoradiographic and ablation-degeneration techniques, the intrinsic cortical connections of the posterior parietal cortex in the rhesus monkey were traced and correlated with a reappraisal of cerebral architectonics. Two major rostral-to-caudal connectional sequences exist. One begins in the dorsal postcentral gyrus (area 2) and proceeds, through architectonic divisions of the superior parietal lobule (areas PE and PEc), to a cortical region on the medial surface of the parietal lobe (area PGm). This area has architectonic features similar to those of the caudal inferior parietal lobule (area PG). The second sequence begins in the ventral post/central gyrus (area 2) and passes through the rostral inferior parietal lobule (areas PG and PFG) to reach the caudal inferior parietal lobule (area PG). Both the superior parietal lobule and the rostral inferior parietal lobule also send projections to various other zones located in the parietal opercular region, the intraparietal sulcus, and the caudalmost portion of the cingulate sulcus. Areas PGm and PG, on the other hand, project to each other, to the cingulate region, to the caudalmost portion of the superior temporal gyrus, and to the upper bank of the superior temporal sulcus. Finally, a reciprocal sequence of connections, directed from caudal to rostral, links together many of the above-mentioned parietal zones. With regard to the laminar pattern of termination, the rostral-to-caudal connections are primarily distributed in the form of cortical ''columns'' while the caudal-to-rostral connections are found mainly over the first cortical cell layer

  3. Mathematical Foundation Based Inter-Connectivity modelling of Thermal Image processing technique for Fire Protection

    OpenAIRE

    Sayantan Nath; Sonali Agarwal; G.N. Pandey

    2015-01-01

    In this paper, integration between multiple functions of image processing and its statistical parameters for intelligent alarming series based fire detection system is presented. The proper inter-connectivity mapping between processing elements of imagery based on classification factor for temperature monitoring and multilevel intelligent alarm sequence is introduced by abstractive canonical approach. The flow of image processing components between core implementation of intelligent alarming ...

  4. Altered functional connectivity in persistent developmental stuttering.

    Science.gov (United States)

    Yang, Yang; Jia, Fanlu; Siok, Wai Ting; Tan, Li Hai

    2016-01-01

    Persistent developmental stuttering (PDS) is a speech disorder that impairs communication skills. Despite extensive research, the core causes of PDS are elusive. Converging evidence from task-induced neuroimaging methods has demonstrated the contributions of the basal ganglia and the cerebellum to PDS, but such task-state neuroimaging findings are often confounded by behavioral performance differences between subjects who stutter and normal controls. Here, using resting-state functional magnetic resonance imaging, we investigated functional connectivity within cerebellar-cortical and basal ganglia-thalamocortical networks in 16 adults who stutter and 18 age-matched fluent speakers. Seed-to-voxel analysis demonstrated that, compared to controls, adults who stutter showed alternations in functional connectivity of cerebellum to motor cortex as well as connectivity among different locals within cerebellum. Additionally, we found that functional connectivity within cerebellar circuits was significantly correlated with severity of stuttering. The alternations of functional connectivity within basal ganglia-thalamocortical networks were identified as the reduced connectivity of the putamen to the superior temporal gyrus and inferior parietal lobules in adults who stutter. The abnormalities of resting state functional connectivity are assumed to affect language planning and motor execution critical for speaking fluently. Our findings may yield neurobiological cues to the biomarkers of PDS. PMID:26743821

  5. Mapping hydrologic connectivity of geographically isolated wetlands

    Science.gov (United States)

    Ameli, Ali; Creed, Irena

    2016-04-01

    Geographically isolated wetlands (GIWs) are characterized as depressional landscape features completely surrounded by uplands. These small and typically circular landscape features represent a vast majority of wetlands in various landscapes in North America (98% of all wetlands in the Prairie Pothole Region). Geographical isolation, however, does not imply the hydrological isolation. Although geospatial data (e.g., aerial photos) suggested that GIWs lack a persistent surface water connection, the groundwater connection between GIWs and navigable downstream waters can be substantial with large fluxes at the regional scales. The surface/subsurface connections among GIWs and between GIWs and navigable waters are difficult to map and quantify. This is intimately tied to the fact that an efficient incorporation of these small geometric features and characterization of the mechanisms behind these connectivities are challenging within grid-based simulators. We used a physically-based grid-free groundwater-surface water interaction and surface flow routing schemes to map and assess the watershed-scale GIWs connectivity within an extensively studied watershed at the Canadian prairie pothole region with high density of GIWs. The results showed that there is a persistent subsurface connectivity among GIWs and between GIWs and navigable waters. Surface connection was rare and only occurred during extreme events. The results of this paper have significant implications for developing scientifically grounded environmental policy for protection of GIWs within North American Prairie.

  6. Transient of power pulse and its sequence in power electronics

    Institute of Scientific and Technical Information of China (English)

    ZHAO ZhengMing; BAI Hua; YUAN LiQiang

    2007-01-01

    Various failures and destructions occur in the applications of the power electronic converter, The real practice shows that these failures are connected with the concentration of the transient power pulse. In allusion to the physical characteristics of power electronic converters, this paper proposed that the power pulse and its sequence are the basis for power electronics in the perspective of electromagnetic energy. The authors analyzed the transient processes in the power semiconductors,electric conduction loops and controller system and illustrated the power pulse phenomena in high voltage and high power inverters. This investigation on the power pulse sequence is very meaningful for the failure analysis and device protection and has become an important topic in power electronics.

  7. Transient of power pulse and its sequence in power electronics

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    Various failures and destructions occur in the applications of the power electronic converter. The real practice shows that these failures are connected with the con-centration of the transient power pulse. In allusion to the physical characteristics of power electronic converters,this paper proposed that the power pulse and its se-quence are the basis for power electronics in the perspective of electromagnetic energy. The authors analyzed the transient processes in the power semiconductors,electric conduction loops and controller system and illustrated the power pulse phenomena in high voltage and high power inverters. This investigation on the power pulse sequence is very meaningful for the failure analysis and device pro-tection and has become an important topic in power electronics.

  8. Generalized Finite Sequence of Fuzzy Topographic Topological Mapping

    Directory of Open Access Journals (Sweden)

    Tahir Ahmad

    2010-01-01

    Full Text Available Problem statement: Fuzzy Topographic Topological Mapping (FTTM was developed to solve the neuromagnetic inverse problem. FTTM consisted of four topological spaces and connected by three homeomorphisms. FTTM 1 and FTTM 2 were developed to present 3-D view of an unbounded single current source and bounded multicurrent sources, respectively. FTTM 1 and FTTM 2 were homeomorphic and this homeomorphism will generate another 14 FTTM. We conjectured if there exist n elements of FTTM, then the numbers of new elements are n4-n. Approach: In this study, the conjecture was proven by viewing FTTMs as sequence and using its geometrical features. Results: In the process, several definitions were developed, geometrical and algebraic properties of FTTM were discovered. Conclusion: The conjecture was proven and some features of the sequence appear in Pascal Triangle.

  9. Configuring Random Graph Models with Fixed Degree Sequences

    CERN Document Server

    Fosdick, Bailey K; Nishimura, Joel; Ugander, Johan

    2016-01-01

    Random graph null models have found widespread application in diverse research communities analyzing network datasets. The most popular family of random graph null models, called configuration models, are defined as uniform distributions over a space of graphs with a fixed degree sequence. Commonly, properties of an empirical network are compared to properties of an ensemble of graphs from a configuration model in order to quantify whether empirical network properties are meaningful or whether they are instead a common consequence of the particular degree sequence. In this work we study the subtle but important decisions underlying the specification of a configuration model, and investigate the role these choices play in graph sampling procedures and a suite of applications. We place particular emphasis on the importance of specifying the appropriate graph labeling---stub-labeled or vertex-labeled---under which to consider a null model, a choice that closely connects the study of random graphs to the study of...

  10. Altered thalamic functional connectivity in multiple sclerosis

    International Nuclear Information System (INIS)

    Highlights: •We demonstrated decreased connectivity between thalamus and cortical regions in MS. •Increased intra- and inter-thalamic connectivity was also observed in MS. •The increased functional connectivity is attenuated by increasing disease duration. -- Abstract: Objective: To compare thalamic functional connectivity (FC) in patients with multiple sclerosis (MS) and healthy controls (HC), and correlate these connectivity measures with other MRI and clinical variables. Methods: We employed resting-state functional MRI (fMRI) to examine changes in thalamic connectivity by comparing thirty-five patients with MS and 35 age- and sex-matched HC. Thalamic FC was investigated by correlating low frequency fMRI signal fluctuations in thalamic voxels with voxels in all other brain regions. Additionally thalamic volume fraction (TF), T2 lesion volume (T2LV), EDSS and disease duration were recorded and correlated with the FC changes. Results: MS patients were found to have a significantly lower TF than HC in bilateral thalami. Compared to HC, the MS group showed significantly decreased FC between thalamus and several brain regions including right middle frontal and parahippocampal gyri, and the left inferior parietal lobule. Increased intra- and inter-thalamic FC was observed in the MS group compared to HC. These FC alterations were not correlated with T2LV, thalamic volume or lesions. In the MS group, however, there was a negative correlation between disease duration and inter-thalamic connectivity (r = −0.59, p < 0.001). Conclusion: We demonstrated decreased FC between thalamus and several cortical regions, while increased intra- and inter-thalamic connectivity in MS patients. These complex functional changes reflect impairments and/or adaptations that are independent of T2LV, thalamic volume or presence of thalamic lesions. The negative correlation between disease duration and inter-thalamic connectivity could indicate an adaptive role of thalamus that is

  11. Low Pore Connectivity in Natural Rock

    Energy Technology Data Exchange (ETDEWEB)

    Hu, Qinhong; Ewing, Robert P.; Dultz, Stefan

    2012-05-15

    As repositories for CO₂ and radioactive waste, as oil and gas reservoirs, and as contaminated sites needing remediation, rock formations play a central role in energy and environmental management. The connectivity of the rock's porespace strongly affects fluid flow and solute transport. This work examines pore connectivity and its implications for fluid flow and chemical transport. Three experimental approaches (imbibition, tracer concentration profiles, and imaging) were used in combination with network modeling. In the imbibition results, three types of imbibition slope [log (cumulative imbibition) vs. log (imbibition time)] were found: the classical 0.5, plus 0.26, and 0.26 transitioning to 0.5. The imbibition slope of 0.26 seen in Indiana sandstone, metagraywacke, and Barnett shale indicates low pore connectivity, in contrast to the slope of 0.5 seen in the well-connected Berea sandstone. In the tracer profile work, rocks exhibited different distances to the plateau porosity, consistent with the pore connectivity from the imbibition tests. Injection of a molten metal into connected pore spaces, followed by 2-D imaging of the solidified alloy in polished thin sections, allowed direct assessment of pore structure and lateral connection in the rock samples. Pore-scale network modeling gave results consistent with measurements, confirming pore connectivity as the underlying cause of both anomalous behaviors: imbibition slope not having the classical value of 0.5, and accessible porosity being a function of distance from the edge. A poorly connected porespace will exhibit anomalous behavior in fluid flow and chemical transport, such as a lower imbibition slope (in air–water system) and diffusion rate than expected from classical behavior.

  12. Low pore connectivity in natural rock.

    Science.gov (United States)

    Hu, Qinhong; Ewing, Robert P; Dultz, Stefan

    2012-05-15

    As repositories for CO(2) and radioactive waste, as oil and gas reservoirs, and as contaminated sites needing remediation, rock formations play a central role in energy and environmental management. The connectivity of the rock's porespace strongly affects fluid flow and solute transport. This work examines pore connectivity and its implications for fluid flow and chemical transport. Three experimental approaches (imbibition, tracer concentration profiles, and imaging) were used in combination with network modeling. In the imbibition results, three types of imbibition slope [log (cumulative imbibition) vs. log (imbibition time)] were found: the classical 0.5, plus 0.26, and 0.26 transitioning to 0.5. The imbibition slope of 0.26 seen in Indiana sandstone, metagraywacke, and Barnett shale indicates low pore connectivity, in contrast to the slope of 0.5 seen in the well-connected Berea sandstone. In the tracer profile work, rocks exhibited different distances to the plateau porosity, consistent with the pore connectivity from the imbibition tests. Injection of a molten metal into connected pore spaces, followed by 2-D imaging of the solidified alloy in polished thin sections, allowed direct assessment of pore structure and lateral connection in the rock samples. Pore-scale network modeling gave results consistent with measurements, confirming pore connectivity as the underlying cause of both anomalous behaviors: imbibition slope not having the classical value of 0.5, and accessible porosity being a function of distance from the edge. A poorly connected porespace will exhibit anomalous behavior in fluid flow and chemical transport, such as a lower imbibition slope (in air-water system) and diffusion rate than expected from classical behavior. PMID:22507286

  13. Low pore connectivity in natural rock

    Science.gov (United States)

    Hu, Qinhong; Ewing, Robert P.; Dultz, Stefan

    2012-05-01

    As repositories for CO2 and radioactive waste, as oil and gas reservoirs, and as contaminated sites needing remediation, rock formations play a central role in energy and environmental management. The connectivity of the rock's porespace strongly affects fluid flow and solute transport. This work examines pore connectivity and its implications for fluid flow and chemical transport. Three experimental approaches (imbibition, tracer concentration profiles, and imaging) were used in combination with network modeling. In the imbibition results, three types of imbibition slope [log (cumulative imbibition) vs. log (imbibition time)] were found: the classical 0.5, plus 0.26, and 0.26 transitioning to 0.5. The imbibition slope of 0.26 seen in Indiana sandstone, metagraywacke, and Barnett shale indicates low pore connectivity, in contrast to the slope of 0.5 seen in the well-connected Berea sandstone. In the tracer profile work, rocks exhibited different distances to the plateau porosity, consistent with the pore connectivity from the imbibition tests. Injection of a molten metal into connected pore spaces, followed by 2-D imaging of the solidified alloy in polished thin sections, allowed direct assessment of pore structure and lateral connection in the rock samples. Pore-scale network modeling gave results consistent with measurements, confirming pore connectivity as the underlying cause of both anomalous behaviors: imbibition slope not having the classical value of 0.5, and accessible porosity being a function of distance from the edge. A poorly connected porespace will exhibit anomalous behavior in fluid flow and chemical transport, such as a lower imbibition slope (in air-water system) and diffusion rate than expected from classical behavior.

  14. Altered thalamic functional connectivity in multiple sclerosis

    Energy Technology Data Exchange (ETDEWEB)

    Liu, Yaou; Liang, Peipeng; Duan, Yunyun; Huang, Jing; Ren, Zhuoqiong; Jia, Xiuqin [Department of Radiology, Xuanwu Hospital, Capital Medical University, Beijing 100053 (China); Dong, Huiqing; Ye, Jing [Department of Neurology, Xuanwu Hospital, Capital Medical University, Beijing 100053 (China); Shi, Fu-Dong [Department of Neurology and Tianjin Neurological Institute, Tianjin Medical University General Hospital, Tianjin 300052 (China); Butzkueven, Helmut [Department of Medicine, University of Melbourne, Parkville 3010 (Australia); Li, Kuncheng, E-mail: kunchengli55@gmail.com [Department of Radiology, Xuanwu Hospital, Capital Medical University, Beijing 100053 (China)

    2015-04-15

    Highlights: •We demonstrated decreased connectivity between thalamus and cortical regions in MS. •Increased intra- and inter-thalamic connectivity was also observed in MS. •The increased functional connectivity is attenuated by increasing disease duration. -- Abstract: Objective: To compare thalamic functional connectivity (FC) in patients with multiple sclerosis (MS) and healthy controls (HC), and correlate these connectivity measures with other MRI and clinical variables. Methods: We employed resting-state functional MRI (fMRI) to examine changes in thalamic connectivity by comparing thirty-five patients with MS and 35 age- and sex-matched HC. Thalamic FC was investigated by correlating low frequency fMRI signal fluctuations in thalamic voxels with voxels in all other brain regions. Additionally thalamic volume fraction (TF), T2 lesion volume (T2LV), EDSS and disease duration were recorded and correlated with the FC changes. Results: MS patients were found to have a significantly lower TF than HC in bilateral thalami. Compared to HC, the MS group showed significantly decreased FC between thalamus and several brain regions including right middle frontal and parahippocampal gyri, and the left inferior parietal lobule. Increased intra- and inter-thalamic FC was observed in the MS group compared to HC. These FC alterations were not correlated with T2LV, thalamic volume or lesions. In the MS group, however, there was a negative correlation between disease duration and inter-thalamic connectivity (r = −0.59, p < 0.001). Conclusion: We demonstrated decreased FC between thalamus and several cortical regions, while increased intra- and inter-thalamic connectivity in MS patients. These complex functional changes reflect impairments and/or adaptations that are independent of T2LV, thalamic volume or presence of thalamic lesions. The negative correlation between disease duration and inter-thalamic connectivity could indicate an adaptive role of thalamus that is

  15. Task-related functional connectivity of the caudate mediates the association between trait mindfulness and implicit learning in older adults.

    Science.gov (United States)

    Stillman, Chelsea M; You, Xiaozhen; Seaman, Kendra L; Vaidya, Chandan J; Howard, James H; Howard, Darlene V

    2016-08-01

    Accumulating evidence shows a positive relationship between mindfulness and explicit cognitive functioning, i.e., that which occurs with conscious intent and awareness. However, recent evidence suggests that there may be a negative relationship between mindfulness and implicit types of learning, or those that occur without conscious awareness or intent. Here we examined the neural mechanisms underlying the recently reported negative relationship between dispositional mindfulness and implicit probabilistic sequence learning in both younger and older adults. We tested the hypothesis that the relationship is mediated by communication, or functional connectivity, of brain regions once traditionally considered to be central to dissociable learning systems: the caudate, medial temporal lobe (MTL), and prefrontal cortex (PFC). We first replicated the negative relationship between mindfulness and implicit learning in a sample of healthy older adults (60-90 years old) who completed three event-related runs of an implicit sequence learning task. Then, using a seed-based connectivity approach, we identified task-related connectivity associated with individual differences in both learning and mindfulness. The main finding was that caudate-MTL connectivity (bilaterally) was positively correlated with learning and negatively correlated with mindfulness. Further, the strength of task-related connectivity between these regions mediated the negative relationship between mindfulness and learning. This pattern of results was limited to the older adults. Thus, at least in healthy older adults, the functional communication between two interactive learning-relevant systems can account for the relationship between mindfulness and implicit probabilistic sequence learning. PMID:27121302

  16. Intensive reasoning training alters patterns of brain connectivity at rest.

    Science.gov (United States)

    Mackey, Allyson P; Miller Singley, Alison T; Bunge, Silvia A

    2013-03-13

    Patterns of correlated activity among brain regions reflect functionally relevant networks that are widely assumed to be stable over time. We hypothesized that if these correlations reflect the prior history of coactivation of brain regions, then a marked shift in cognition could alter the strength of coupling between these regions. We sought to test whether intensive reasoning training in humans would result in tighter coupling among regions in the lateral frontoparietal network, as measured with resting-state fMRI (rs-fMRI). Rather than designing an artificial training program, we studied individuals who were preparing for a standardized test that places heavy demands on relational reasoning, the Law School Admissions Test (LSAT). LSAT questions require test takers to group or sequence items according to a set of complex rules. We recruited young adults who were enrolled in an LSAT course that offers 70 h of reasoning instruction (n = 25), and age- and IQ-matched controls intending to take the LSAT in the future (n = 24). rs-fMRI data were collected for all subjects during two scanning sessions separated by 90 d. An analysis of pairwise correlations between brain regions implicated in reasoning showed that fronto-parietal connections were strengthened, along with parietal-striatal connections. These findings provide strong evidence for neural plasticity at the level of large-scale networks supporting high-level cognition. PMID:23486950

  17. Higher U(1)-gerbe connections in geometric prequantization

    Science.gov (United States)

    Fiorenza, Domenico; Rogers, Christopher L.; Schreiber, Urs

    2016-07-01

    We promote geometric prequantization to higher geometry (higher stacks), where a prequantization is given by a higher principal connection (a higher gerbe with connection). We show fairly generally how there is canonically a tower of higher gauge groupoids and Courant groupoids assigned to a higher prequantization, and establish the corresponding Atiyah sequence as an integrated Kostant-Souriau ∞-group extension of higher Hamiltonian symplectomorphisms by higher quantomorphisms. We also exhibit the ∞-group cocycle which classifies this extension and discuss how its restrictions along Hamiltonian ∞-actions yield higher Heisenberg cocycles. In the special case of higher differential geometry over smooth manifolds, we find the L∞-algebra extension of Hamiltonian vector fields — which is the higher Poisson bracket of local observables — and show that it is equivalent to the construction proposed by the second author in n-plectic geometry. Finally, we indicate a list of examples of applications of higher prequantization in the extended geometric quantization of local quantum field theories and specifically in string geometry.

  18. Increased facilitatory connectivity from the pre-SMA to the left dorsal premotor cortex during pseudoword repetition

    DEFF Research Database (Denmark)

    Hartwigsen, Gesa; Saur, Dorothee; Price, Cathy J;

    2013-01-01

    that the pre-SMA plays a supervisory role in the generation and subsequent sequencing of motor plans. Diffusion tensor imaging-based fiber tracking in another group of healthy volunteers showed that the functional connection between both regions is underpinned by a direct cortico-cortical anatomical...

  19. Limited Genetic Connectivity between Gorgonian Morphotypes along a Depth Gradient

    Science.gov (United States)

    Gori, Andrea; Lopez-González, Pablo; Bramanti, Lorenzo; Rossi, Sergio; Gili, Josep-Maria; Abbiati, Marco

    2016-01-01

    Gorgonian species show a high morphological variability in relation to the environment in which they live. In coastal areas, parameters such as temperature, light, currents, and food availability vary significantly with depth, potentially affecting morphology of the colonies and the structure of the populations, as well as their connectivity patterns. In tropical seas, the existence of connectivity between shallow and deep populations supported the hypothesis that the deep coral reefs could potentially act as (reproductive) refugia fostering re-colonization of shallow areas after mortality events. Moreover, this hypothesis is not so clear accepted in temperate seas. Eunicella singularis is one of the most common gorgonian species in Northwestern Mediterranean Sea, playing an important role as ecosystem engineer by providing biomass and complexity to the coralligenous habitats. It has a wide bathymetric distribution ranging from about 10 m to 100 m. Two depth-related morphotypes have been identified, differing in colony morphology, sclerite size and shape, and occurrence of symbiotic algae, but not in mitochondrial DNA haplotypes. In the present study the genetic structure of E. singularis populations along a horizontal and bathymetric gradient was assessed using microsatellites and ITS1 sequences. Restricted gene flow was found at 30–40 m depth between the two Eunicella morphotypes. Conversely, no genetic structuring has been found among shallow water populations within a spatial scale of ten kilometers. The break in gene flow between shallow and deep populations contributes to explain the morphological variability observed at different depths. Moreover, the limited vertical connectivity hinted that the refugia hypothesis does not apply to E. singularis. Re-colonization of shallow water populations, occasionally affected by mass mortality events, should then be mainly fueled by larvae from other shallow water populations. PMID:27490900

  20. Bridge connection of quantum Hall elementary devices

    CERN Document Server

    Callegaro, Luca

    2013-01-01

    Multiple-series and multiple-parallel connections of quantum Hall elementary devices allow the realization of multiple or fractional values of the quantized Hall resistance, rejecting the effect of contact and wiring resistances. We introduce here the multiple-bridge connection, which maintains the properties of multiple-series and parallel connections and allows more freedom in the choice of the topology of networks composed of quantum Hall elements, and the design of more efficient quantum Hall array resistance standards (and other devices). As an example, a 5-element network is analyzed in detail.

  1. Is the spin connection confined or condensed?

    CERN Document Server

    Donoghue, John F

    2016-01-01

    The spin connection enters the theory of gravity as a nonabelian gauge field associated with local Lorentz transformations. Normally it is eliminated from making an extra assumption - that of the metricity of the vierbein field. However, treated by itself with the usual gauge action, it has a negative beta function, implying that it is asymptotically free. I suggest that the spin connection could be confined (or perhaps partially confined) in the same way as other nonabelian gauge fields. This would remove the need to make the extra assumption of metricity, as the spin connection would not be present in the low energy theory, leaving the symmetry to be realized only using metric variables.

  2. Electrical connection structure for a superconductor element

    Science.gov (United States)

    Lallouet, Nicolas; Maguire, James

    2010-05-04

    The invention relates to an electrical connection structure for a superconductor element cooled by a cryogenic fluid and connected to an electrical bushing, which bushing passes successively through an enclosure at an intermediate temperature between ambient temperature and the temperature of the cryogenic fluid, and an enclosure at ambient temperature, said bushing projecting outside the ambient temperature enclosure. According to the invention, said intermediate enclosure is filled at least in part with a solid material of low thermal conductivity, such as a polyurethane foam or a cellular glass foam. The invention is applicable to connecting a superconductor cable at cryogenic temperature to a device for equipment at ambient temperature.

  3. Connected point set domination of fuzzy graphs

    OpenAIRE

    S. Vimala; J.S.Sathya

    2012-01-01

    A dominating set D of a fuzzy graph is said to be a point set dominating set if for every S⊆V-D there exists a node dD such that is a connected fuzzy graph. The minimum cardinality taken over all minimal point set dominating set is called the point set domination number of a fuzzy graph G and it is denoted by γ_p (G). A point set dominating set D of any fuzzy graph G is a connected point set dominating set if the fuzzy subgraphinduced by D is connected. The minimum cardinality taken over al...

  4. Green optical networks with connection availability guarantee.

    Science.gov (United States)

    Zhang, Xiaoning; Tan, Shufang

    2015-06-29

    In this paper, we study green optical networks with connection availability guarantee. After introducing a power consumption model for green optical network design, we propose a design method called Availability-Guaranteed Energy-Efficient Design (AGEED). In AGEED, we employ dedicated path protection as backup capacity in order to improve connection availability. Based on iterative routing by modifying link weights, we can make idle network resources be switched into sleep mode, and obtain the energy saving effect. Our simulation results show that AGEED is more advantageous to achieve energy-efficient purpose and guarantee the satisfied connection availability levels in comparison with other methods. PMID:26191755

  5. High capacity optical links for datacentre connectivity

    DEFF Research Database (Denmark)

    Tafur Monroy, Idelfonso; Usuga, Mario; Vegas Olmos, Juan José

    There is a timely and growing demand for high capacity optical data transport solutions to provide connectivity inside data centres and between data centres located at different geographical locations. The requirements for reach are in the order of 2 km for intra-datacentre and up to 100 km for...... inter-datacentre connectivity. Moreover, the requirements for such connectivity solutions include also low cost, high data rate and desirable features such as energy efficiency and reduced interfacing cost. In this paper we review several approaches for intra and inter datacentre that use advanced...

  6. The Twisted-Cube Connected Networks

    Institute of Scientific and Technical Information of China (English)

    WANG Deqiang; ZHAO Lianchang

    1999-01-01

    This paper presents a newinterconnection network topology, called the twisted-cube connectednetwork, which is a generation of the twisted 3-cube. The twisted-cubeconnected network is a variant of the hypercube, and it has a betterrecursive structure. The regularity, connectivities, subgraphs of thetwisted-cube connected network are studied. The twisted-cube connectednetwork is proved to be a 3-cube-free network, which is the essentialdifference from the hypercube and variants of the hypercube. Anefficient routing algorithm is proposed, and the diameter ofn-dimensional twisted-cube connected network is proved to be just[n+1/2] which is less than that of the hypercube.

  7. Anhedonia and general distress show dissociable ventromedial prefrontal cortex connectivity in major depressive disorder.

    Science.gov (United States)

    Young, C B; Chen, T; Nusslock, R; Keller, J; Schatzberg, A F; Menon, V

    2016-01-01

    Anhedonia, the reduced ability to experience pleasure in response to otherwise rewarding stimuli, is a core symptom of major depressive disorder (MDD). Although the posterior ventromedial prefrontal cortex (pVMPFC) and its functional connections have been consistently implicated in MDD, their roles in anhedonia remain poorly understood. Furthermore, it is unknown whether anhedonia is primarily associated with intrinsic 'resting-state' pVMPFC functional connectivity or an inability to modulate connectivity in a context-specific manner. To address these gaps, a pVMPFC region of interest was first identified using activation likelihood estimation meta-analysis. pVMPFC connectivity was then examined in relation to anhedonia and general distress symptoms of depression, using both resting-state and task-based functional magnetic resonance imaging involving pleasant music, in current MDD and healthy control groups. In MDD, pVMPFC connectivity was negatively correlated with anhedonia but not general distress during music listening in key reward- and emotion-processing regions, including nucleus accumbens, ventral tegmental area/substantia nigra, orbitofrontal cortex and insula, as well as fronto-temporal regions involved in tracking complex sound sequences, including middle temporal gyrus and inferior frontal gyrus. No such dissociations were observed in the healthy controls, and resting-state pVMPFC connectivity did not dissociate anhedonia from general distress in either group. Our findings demonstrate that anhedonia in MDD is associated with context-specific deficits in pVMPFC connectivity with the mesolimbic reward system when encountering pleasurable stimuli, rather than a static deficit in intrinsic resting-state connectivity. Critically, identification of functional circuits associated with anhedonia better characterizes MDD heterogeneity and may help track of one of its core symptoms. PMID:27187232

  8. Resting state BOLD functional connectivity at 3T: spin echo versus gradient echo EPI.

    Directory of Open Access Journals (Sweden)

    Piero Chiacchiaretta

    Full Text Available Previous evidence showed that, due to refocusing of static dephasing effects around large vessels, spin-echo (SE BOLD signals offer an increased linearity and promptness with respect to gradient-echo (GE acquisition, even at low field. These characteristics suggest that, despite the reduced sensitivity, SE fMRI might also provide a potential benefit when investigating spontaneous fluctuations of brain activity. However, there are no reports on the application of spin-echo fMRI for connectivity studies at low field. In this study we compared resting state functional connectivity as measured with GE and SE EPI sequences at 3T. Main results showed that, within subject, the GE sensitivity is overall larger with respect to that of SE, but to a less extent than previously reported for activation studies. Noteworthy, the reduced sensitivity of SE was counterbalanced by a reduced inter-subject variability, resulting in comparable group statistical connectivity maps for the two sequences. Furthermore, the SE method performed better in the ventral portion of the default mode network, a region affected by signal dropout in standard GE acquisition. Future studies should clarify if these features of the SE BOLD signal can be beneficial to distinguish subtle variations of functional connectivity across different populations and/or treatments when vascular confounds or regions affected by signal dropout can be a critical issue.

  9. ARC Code TI: sequenceMiner

    Data.gov (United States)

    National Aeronautics and Space Administration — The sequenceMiner was developed to address the problem of detecting and describing anomalies in large sets of high-dimensional symbol sequences. sequenceMiner works...

  10. Mitochondrial DNA sequence variation in the Anatolian Peninsula (Turkey)

    Indian Academy of Sciences (India)

    Hatice Mergen; Reyhan Öner; Cihan Öner

    2004-04-01

    Throughout human history, the region known today as the Anatolian peninsula (Turkey) has served as a junction connecting the Middle East, Europe and Central Asia, and, thus, has been subject to major population movements. The present study is undertaken to obtain information about the distribution of the existing mitochondrial D-loop sequence variations in the Turkish population of Anatolia. A few studies have previously reported mtDNA sequences in Turks. We attempted to extend these results by analysing a cohort that is not only larger, but also more representative of the Turkish population living in Anatolia. In order to obtain a descriptive picture for the phylogenetic distribution of the mitochondrial genome within Turkey, we analysed mitochondrial D-loop region sequence variations in 75 individuals from different parts of Anatolia by direct sequencing. Analysis of the two hypervariable segments within the noncoding region of the mitochondrial genome revealed the existence of 81 nucleotide mutations at 79 sites. The neighbour-joining tree of Kimura’s distance matrix has revealed the presence of six main clusters, of which H and U are the most common. The data obtained are also compared with several European and Turkic Central Asian populations.

  11. Hemispheric asymmetries and the control of motor sequences.

    Science.gov (United States)

    Serrien, Deborah J; Sovijärvi-Spapé, Michiel M

    2015-04-15

    Sequencing of finger positions reflects a prototype of skilled behaviour. In order to perform sequencing, cognitive control supports the requirements and postural transitions. In this electroencephalography (EEG) study, we evaluate the effects of hand dominance and assess the neural correlates of unimanual and bimanual sequencing in left- and right-handers. The behavioural measurements provided an index of response planning (response time to first key press) and response execution (time between successive key presses, taps/s and percentage of correct responses), whereas the neural dynamics was determined by means of EEG coherence, expressing the functional connectivity between brain areas. Correlations between brain activity and behaviour were calculated for exploring the neural correlates that are functionally relevant for sequencing. Brain-behavioural correlations during response planning and execution revealed the significance of circuitry in the left hemisphere, underlining its significant role in the organisation of goal-directed behaviour. This lateralisation profile was independent of intrinsic constraints (hand dominance) and extrinsic demands (task requirements), suggesting essential higher-order computations in the left hemisphere. Overall, the observations highlight that the left hemisphere is specialised for sequential motor organisation in left- and right-handers, suggesting an endogenous hemispheric asymmetry for compound actions and the representation of skill; processes that can be separated from those that are involved in hand dominance. PMID:25617529

  12. A simple method for global sequence comparison.

    OpenAIRE

    Pizzi, E; Attimonelli, M; Liuni, S; Frontali, C.; Saccone, C.

    1992-01-01

    A simple method of sequence comparison, based on a correlation analysis of oligonucleotide frequency distributions, is here shown to be a reliable test of overall sequence similarity. The method does not involve sequence alignment procedures and permits the rapid screening of large amounts of sequence data. It identifies those sequences which deserve more careful analysis of sequence similarity at the level of resolution of the single nucleotide. It uses observed quantities only and does not ...

  13. Sequence classification using statistical pattern recognition

    OpenAIRE

    Iglesias, José Antonio; Ledezma, Agapito; Sanchis, Araceli

    2007-01-01

    Sequence classification is a significant problem that arises in many different real-world applications. The purpose of a sequence classifier is to assign a class label to a given sequence. Also, to obtain the pattern that characterizes the sequence is usually very useful. In this paper, a technique to discover a pattern from a given sequence is presented followed by a general novel method to classify the sequence. This method considers mainly the dependencies among the neighbouring elements o...

  14. Supercyclicity with Respect to a Sequence on Special Sequence Spaces

    Directory of Open Access Journals (Sweden)

    S. Foroutan, and B. Yousef

    2007-06-01

    Full Text Available Let {β(n}∞ n=−∞ be a sequence of positive numbers such that β(0 = 1 and let 1 < p < ∞. We consider the space of all formal Laurent series f(z = P∞ n=−∞ ˆf(nz n such that X∞ n=−∞ | ˆf(n| pβ(n p < ∞. We investigate the supercyclicity with respect to a sequence on the Banach spaces of formal Laurent series

  15. Embedded adhesive connection for laminated glass plates

    DEFF Research Database (Denmark)

    Hansen, Jens Zangenberg; Poulsen, S.H.; Bagger, A.; Stang, Henrik; Olesen, John Forbes

    2012-01-01

    The structural behavior of a new connection design, the embedded adhesive connection, used for laminated glass plates is investigated. The connection consists of an aluminum plate encapsulated in-between two adjacent triple layered laminated glass plates. Fastening between glass and aluminum is...... ensured using a structural adhesive. At first, the elastic and viscoelastic material properties of the adhesive are identified where the influence of load-rate and failure properties are also examined. Through an inverse analysis using the finite element method, the experimental observations are...... replicated to identify a material model of the adhesive. The material model consists of an elastic and linear viscoelastic formulation suitable for a numerical implementation of the material. Based on two relevant load cases, out-of-plane bending and in-plane shear, the connection performance is investigated...

  16. Bound on m-restricted Edge Connectivity

    Institute of Scientific and Technical Information of China (English)

    Jian-ping Ou; Fu-ji Zhang

    2003-01-01

    An m-restricted edge cut is an edge cut that separates a connected graph into a disconnected one with no components having order less than m. m-restricted edge connectivity λm is the cardinality of a minimum m-restricted edge cut. Let G be a connected k-regular graph of order at least 2m that contains m-restricted edge cuts and X be a subgraph of G. Let( )(X) denote the number of edges with one end in X and the other not in X and ξm = min{( )(X): X is a connected vertex-induced subgraph of order m}. It is proved in this paper that if G has girth at least m/2 + 2, then λm ≤ξm. The upper bound of λm is sharp.

  17. Heteroclinic connections in plane Couette flow

    CERN Document Server

    Halcrow, Jonathan; Cvitanović, Predrag; Viswanath, Divakar

    2008-01-01

    Plane Couette flow transitions to turbulence for Re~325 even though the laminar solution with a linear profile is linearly stable for all Re (Reynolds number). One starting point for understanding this subcritical transition is the existence of invariant sets in the state space of the Navier Stokes equation, such as upper and lower branch equilibria and periodic and relative periodic solutions, that are quite distinct from the laminar solution. This article reports several heteroclinic connections between such objects and briefly describes a numerical method for locating heteroclinic connections. Computing such connections is essential for understanding the global dynamics of spatially localized structures that occur in transitional plane Couette flow. We show that the nature of streaks and streamwise rolls can change significantly along a heteroclinic connection.

  18. MedlinePlus Connect: Technical Information

    Science.gov (United States)

    ... code can be submitted per request. Supports the HL7 Context-Aware Knowledge Retrieval (Infobutton) standard. Connects using ... How does it work? Responds to requests with XML, JSON, or JSONP, which implementers can use to ...

  19. Periodic words connected with the Fibonacci words

    Directory of Open Access Journals (Sweden)

    G. M. Barabash

    2016-06-01

    Full Text Available In this paper we introduce two families of periodic words (FLP-words of type 1 and FLP-words of type 2 that are connected with the Fibonacci words and investigated their properties.

  20. An Investigation into Node Strength Connectivity Correlation

    Institute of Scientific and Technical Information of China (English)

    SHI Jian-Jun; WANG Yong-Li; HE Da-Ren

    2009-01-01

    We propose investigating the node strength connectivity correlation by a resource-allocation method and the traditional multiple edge method, respectively. A rough analysis suggests that the resource-allocation node strength connectivity correlation is always negative, which is different from the connectivity correlation of the traditional multiple edge node strength (it can show either positive, negative or no correlation). As examples,empirical investigation results for two real world cooperation-competition networks (the 2004 Athens Olympic Games network and the mixed drink network) are presented. We believe that the resource-allocation node strength connectivity correlation can serve as a description of the relative crackajack distribution, which is a complementarity of the traditional multiple edge one.

  1. Transistor Effect in Improperly Connected Transistors.

    Science.gov (United States)

    Luzader, Stephen; Sanchez-Velasco, Eduardo

    1996-01-01

    Discusses the differences between the standard representation and a realistic representation of a transistor. Presents an experiment that helps clarify the explanation of the transistor effect and shows why transistors should be connected properly. (JRH)

  2. Asthma Research: The NIH–NJRC Connection

    Science.gov (United States)

    ... Bar Home Current Issue Past Issues Special Section Asthma Research: The NIH–NJRC Connection Past Issues / Fall ... the many ways that NIH supports and promotes asthma research is through its strong relationship with National ...

  3. Intracranial EEG Connectivity Analysis and Result Imaging

    Czech Academy of Sciences Publication Activity Database

    Klimeš, Petr; Janeček, Jiří; Jurák, Pavel; Halámek, Josef; Chládek, Jan; Brázdil, M.

    2012-01-01

    Roč. 2, č. 4 (2012), s. 275-279. ISSN 2010-3638 Institutional support: RVO:68081731 Keywords : Connectivity * Correlation * Intracranial EEG * Signal Processing Subject RIV: JA - Electronics ; Optoelectronics, Electrical Engineering

  4. Affine connection form of Regge calculus

    CERN Document Server

    Khatsymovsky, V M

    2015-01-01

    Regge action is represented analogously to how the Palatini action for general relativity (GR) as some functional of the metric and a general connection as independent variables represents the Einstein-Hilbert action. The piecewise flat (or simplicial) spacetime of Regge calculus is equipped with some world coordinates and some piecewise affine metric which is completely defined by the set of edge lengths and the world coordinates of the vertices. The conjugate variables are the general nondegenerate matrices on the 3-simplices which play a role of a general discrete connection. Our previous result on some representation of the Regge calculus action in terms of the local Euclidean (Minkowsky) frame vectors and orthogonal connection matrices as independent variables is somewhat modified for the considered case of the general linear group GL(4,R) of the connection matrices. As a result, we have some action invariant w. r. t. arbitrary change of coordinates of the vertices (and related GL(4,R) transformations in...

  5. Better models are more effectively connected models

    Science.gov (United States)

    Nunes, João Pedro; Bielders, Charles; Darboux, Frederic; Fiener, Peter; Finger, David; Turnbull-Lloyd, Laura; Wainwright, John

    2016-04-01

    The concept of hydrologic and geomorphologic connectivity describes the processes and pathways which link sources (e.g. rainfall, snow and ice melt, springs, eroded areas and barren lands) to accumulation areas (e.g. foot slopes, streams, aquifers, reservoirs), and the spatial variations thereof. There are many examples of hydrological and sediment connectivity on a watershed scale; in consequence, a process-based understanding of connectivity is crucial to help managers understand their systems and adopt adequate measures for flood prevention, pollution mitigation and soil protection, among others. Modelling is often used as a tool to understand and predict fluxes within a catchment by complementing observations with model results. Catchment models should therefore be able to reproduce the linkages, and thus the connectivity of water and sediment fluxes within the systems under simulation. In modelling, a high level of spatial and temporal detail is desirable to ensure taking into account a maximum number of components, which then enables connectivity to emerge from the simulated structures and functions. However, computational constraints and, in many cases, lack of data prevent the representation of all relevant processes and spatial/temporal variability in most models. In most cases, therefore, the level of detail selected for modelling is too coarse to represent the system in a way in which connectivity can emerge; a problem which can be circumvented by representing fine-scale structures and processes within coarser scale models using a variety of approaches. This poster focuses on the results of ongoing discussions on modelling connectivity held during several workshops within COST Action Connecteur. It assesses the current state of the art of incorporating the concept of connectivity in hydrological and sediment models, as well as the attitudes of modellers towards this issue. The discussion will focus on the different approaches through which connectivity

  6. Statistical properties of DNA sequences

    Science.gov (United States)

    Peng, C.-K.; Buldyrev, S. V.; Goldberger, A. L.; Havlin, S.; Mantegna, R. N.; Simons, M.; Stanley, H. E.

    1995-02-01

    We review evidence supporting the idea that the DNA sequence in genese containing non-coding regions is correlated, and that the correlation is remarkably long range - indeed, nucleotides thousands of base pairs distant are correlated. We do not find such a long-range correlation in the coding regions of the gene. We resolve the problem of the “non-stationarity” feature of the sequence of base pairs by applying a new algorithm called detrended fluctuation analysis (DFA). We address the claim of Voss that there is no difference in the statistical properties of coding and non-coding regions of DNA by systematically applying the DFA algorithm, as well as standard FFT analysis, to every DNA sequence (33 301 coding and 29 453 non-coding) in the entire GenBank database. Finally, we describe briefly some recent work showing that the non-coding sequences have certain statistical features in common with natural and artificial languages. Specifically, we adapt to DNA the Zipf approach to analyzing linguistic texts. These statistical properties of non-coding sequences support the possibility that non-coding regions of DNA may carry biological information.

  7. Sequencing Needs for Viral Diagnostics

    Energy Technology Data Exchange (ETDEWEB)

    Gardner, S N; Lam, M; Mulakken, N J; Torres, C L; Smith, J R; Slezak, T

    2004-01-26

    We built a system to guide decisions regarding the amount of genomic sequencing required to develop diagnostic DNA signatures, which are short sequences that are sufficient to uniquely identify a viral species. We used our existing DNA diagnostic signature prediction pipeline, which selects regions of a target species genome that are conserved among strains of the target (for reliability, to prevent false negatives) and unique relative to other species (for specificity, to avoid false positives). We performed simulations, based on existing sequence data, to assess the number of genome sequences of a target species and of close phylogenetic relatives (''near neighbors'') that are required to predict diagnostic signature regions that are conserved among strains of the target species and unique relative to other bacterial and viral species. For DNA viruses such as variola (smallpox), three target genomes provide sufficient guidance for selecting species-wide signatures. Three near neighbor genomes are critical for species specificity. In contrast, most RNA viruses require four target genomes and no near neighbor genomes, since lack of conservation among strains is more limiting than uniqueness. SARS and Ebola Zaire are exceptional, as additional target genomes currently do not improve predictions, but near neighbor sequences are urgently needed. Our results also indicate that double stranded DNA viruses are more conserved among strains than are RNA viruses, since in most cases there was at least one conserved signature candidate for the DNA viruses and zero conserved signature candidates for the RNA viruses.

  8. Network Analysis of Sequence-Function Relationships and Exploration of Sequence Space of TEM β-Lactamases.

    Science.gov (United States)

    Zeil, Catharina; Widmann, Michael; Fademrecht, Silvia; Vogel, Constantin; Pleiss, Jürgen

    2016-05-01

    The Lactamase Engineering Database (www.LacED.uni-stuttgart.de) was developed to facilitate the classification and analysis of TEM β-lactamases. The current version contains 474 TEM variants. Two hundred fifty-nine variants form a large scale-free network of highly connected point mutants. The network was divided into three subnetworks which were enriched by single phenotypes: one network with predominantly 2be and two networks with 2br phenotypes. Fifteen positions were found to be highly variable, contributing to the majority of the observed variants. Since it is expected that a considerable fraction of the theoretical sequence space is functional, the currently sequenced 474 variants represent only the tip of the iceberg of functional TEM β-lactamase variants which form a huge natural reservoir of highly interconnected variants. Almost 50% of the variants are part of a quartet. Thus, two single mutations that result in functional enzymes can be combined into a functional protein. Most of these quartets consist of the same phenotype, or the mutations are additive with respect to the phenotype. By predicting quartets from triplets, 3,916 unknown variants were constructed. Eighty-seven variants complement multiple quartets and therefore have a high probability of being functional. The construction of a TEM β-lactamase network and subsequent analyses by clustering and quartet prediction are valuable tools to gain new insights into the viable sequence space of TEM β-lactamases and to predict their phenotype. The highly connected sequence space of TEM β-lactamases is ideally suited to network analysis and demonstrates the strengths of network analysis over tree reconstruction methods. PMID:26883706

  9. Sequence Patterns of Identity Authentication Protocols

    Institute of Scientific and Technical Information of China (English)

    Tao Hongcai; He Dake

    2006-01-01

    From the viewpoint of protocol sequence, analyses are made of the sequence patterns of possible identity authentication protocol under two cases: with or without the trusted third party (TTP). Ten feasible sequence patterns of authentication protocol with TTP and 5 sequence patterns without TTP are gained. These gained sequence patterns meet the requirements for identity authentication,and basically cover almost all the authentication protocols with TTP and without TTP at present. All of the sequence patterns gained are classified into unilateral or bilateral authentication. Then , according to the sequence symmetry, several good sequence patterns with TTP are evaluated. The accompolished results can provide a reference to design of new identity authentication protocols.

  10. Mapping Smoking Addiction Using Effective Connectivity Analysis

    OpenAIRE

    Tang, Rongxiang; Razi, Adeel; Friston, Karl J.; Tang, Yi-Yuan

    2016-01-01

    Prefrontal and parietal cortex, including the default mode network (DMN; medial prefrontal cortex (mPFC), and posterior cingulate cortex, PCC), have been implicated in addiction. Nonetheless, it remains unclear which brain regions play a crucial role in smoking addiction and the relationship among these regions. Since functional connectivity only measures correlations, addiction-related changes in effective connectivity (directed information flow) among these distributed brain regions remain ...

  11. A Grid-Connected Desalination Plant Operation

    OpenAIRE

    Won Ko; Jong-Hyun Lee; Chan Ham

    2013-01-01

    In this paper, a grid-connected desalination plant operation approach is suggested. In desalination plant, large amount of energy is needed to operate pump and motor; hence most of energy is electricity. For this reason, the largest part of the operation cost is electricity charges. To demonstrate power usage, small size desalination measuring system mounted plant is used. Finally, to show the result of a grid-connected desalination plant operation, electric tariff rate of Korea is used. The ...

  12. Adiabatic Connection for Strictly-Correlated Electrons

    OpenAIRE

    Liu, Zhenfei; Burke, Kieron

    2009-01-01

    Modern density functional theory (DFT) calculations employ the Kohn-Sham (KS) system of non-interacting electrons as a reference, with all complications buried in the exchange-correlation energy (Exc). The adiabatic connection formula gives an exact expression for Exc. We consider DFT calculations that instead employ a reference of strictly-correlated electrons. We define a "decorrelation energy" that relates this reference to the real system, and derive the corresponding adiabatic connection...

  13. Functional connectivity and brain networks in schizophrenia

    OpenAIRE

    Lynall, Mary-Ellen; Bassett, Danielle S.; Kerwin, Robert; McKenna, Peter J.; Kitzbichler, Manfred; Müller, Ulrich; Bullmore, Ed

    2010-01-01

    Schizophrenia has often been conceived as a disorder of connectivity between components of large-scale brain networks. We tested this hypothesis by measuring aspects of both functional connectivity and functional network topology derived from resting state fMRI time series acquired at 72 cerebral regions over 17 minutes from 15 healthy volunteers (14 male, 1 female) and 12 people diagnosed with schizophrenia (10 male, 2 female). We investigated between-group differences in strength and divers...

  14. The spin connection of twisted geometry

    OpenAIRE

    Haggard, Hal M.; Rovelli, Carlo; Vidotto, Francesca; Wieland, Wolfgang

    2012-01-01

    Twisted geometry is a piecewise-flat geometry less rigid than Regge geometry. In Loop Gravity, it provides the classical limit for each step of the truncation utilized in the definition of the quantum theory. We define the torsionless spin-connection of a twisted geometry. The difficulty given by the discontinuity of the triad is addressed by interpolating between triads. The curvature of the resulting spin connection reduces to the Regge curvature in the case of a Regge geometry.

  15. Improving network connection locality on multicore systems

    OpenAIRE

    Pesterev, Aleksey; Strauss, Jacob; Zeldovich, Nickolai; Morris, Robert Tappan

    2012-01-01

    Incoming and outgoing processing for a given TCP connection often execute on different cores: an incoming packet is typically processed on the core that receives the interrupt, while outgoing data processing occurs on the core running the relevant user code. As a result, accesses to read/write connection state (such as TCP control blocks) often involve cache invalidations and data movement between cores' caches. These can take hundreds of processor cycles, enough to significantly reduce perfo...

  16. Connectivity Analysis of Cyclically Balanced Fuzzy Graphs

    OpenAIRE

    N. Jicy; Sunil Mathew

    2015-01-01

    The concepts of connectivity and cycle connectivity play an important role in fuzzy graph theory. In this article, cyclic cutvertices, cyclic bridges and cyclically balanced fuzzy graphs are discussed. It is proved that a vertex in a fuzzy graph is a cyclic cutvertex if and only if it is a common vertex of all strong cycles with maximum strength. Also a cyclic cutvertex cannot be a fuzzy endvertex in a fuzzy graph. A characterization of cyclically balanced fuzzy graphs is obtained. Cyclic ver...

  17. Regulation of synaptic connectivity by glia

    OpenAIRE

    Eroglu, Cagla; Barres, Ben A

    2010-01-01

    The human brain contains more than 100 trillion (1014) synaptic connections, which form all of its neural circuits. Neuroscientists have long been interested in how this complex synaptic web is weaved during development and remodelled during learning and disease. Recent studies have uncovered that glial cells are important regulators of synaptic connectivity. These cells are far more active than was previously thought and are powerful controllers of synapse formation, function, plasticity and...

  18. Autaptic Connections Shift Network Excitability and Bursting

    OpenAIRE

    Wiles, Laura; Gu, Shi; Pasqualetti, Fabio; Bassett, Danielle S.; Meaney, David F.

    2016-01-01

    Network architecture forms a critical constraint on neuronal function. Here we examine the role of structural autapses, when a neuron synapses onto itself, in driving network-wide bursting behavior. Using a simple spiking model of neuronal activity, we study how autaptic connections affect activity patterns, and evaluate if neuronal degree or controllability are significant factors that affect changes in bursting from these autaptic connections. We observed that adding increasing numbers of a...

  19. Latest advances in connective tissue disorders

    OpenAIRE

    Rao, Vijay; Bowman, Simon

    2013-01-01

    The connective tissue disorders comprise a number of related conditions that include systemic lupus erythematosus (SLE) and the antiphospholipid (Hughes) syndrome, scleroderma, myositis and Sjögren’s syndrome. They are characterized by autoantibody production and other immune-mediated dysfunction. There are common clinical and serological features with some patients having multiple overlapping connective tissue disorders. The latest advances include new approaches to therapy, including more f...

  20. SERVIR Town Hall - Connecting Space to Village

    Science.gov (United States)

    Limaye, Ashutosh S.; Searby, Nancy D.; Irwin, Daniel; Albers, Cerese

    2013-01-01

    SERVIR, a joint NASA-USAID project, strives to improve environmental decision making through the use of Earth observations, models, and geospatial technology innovations. SERVIR connects these assets with the needs of end users in Mesoamerica, East Africa, and Hindu Kush-Himalaya regions. This Town Hall meeting will engage the AGU community by exploring examples of connecting Space to Village with SERVIR science applications.

  1. Connecting forest ecosystem and microwave backscatter models

    Science.gov (United States)

    Kasischke, Eric S.; Christensen, Norman L., Jr.

    1990-01-01

    A procedure is outlined to connect data obtained from active microwave remote sensing systems with forest ecosystem models. The hierarchy of forest ecosystem models is discussed, and the levels at which microwave remote sensing data can be used as inputs are identified. In addition, techniques to utilize forest ecosystem models to assist in the validation of theoretical microwave backscatter models are identified. Several examples to illustrate these connecting processes are presented.

  2. Human Connections in Red Badge of Courage

    OpenAIRE

    Syed Afroz Ashrafi

    2016-01-01

    The paper Human connection in Red badge of Courage sought to reestablish the notion that humanity survives the ravages of war, the war that kills and alienates a good chunk of human populace. The sounds of bullets cannot soften the tissues of heart, rather it only appalls humanity. Crane’s human connection is stressed as the succor for the tormented and oppressed nations mainly through wars.Keywords: war, nations, death, savagery

  3. Vector sequences - Budding yeast cDNA sequencing project | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available Budding yeast cDNA sequencing project Vector sequences Data detail Data name Vector sequences Description of data contents Vector seq...wnload License Update History of This Database Site Policy | Contact Us Vector sequences - Budding yeast cDNA sequencing project | LSDB Archive ... ...uences used for sequencing. Multi FASTA format. 7 entries. Data file File name: vec

  4. Service connectivity architecture for mobile augmented reality

    Science.gov (United States)

    Turunen, Tuukka; Pyssysalo, Tino; Roening, Juha

    2001-06-01

    Mobile augmented reality can be utilized in a number of different services, and it provides a lot of added value compared to the interfaces used in mobile multimedia today. Intelligent service connectivity architecture is needed for the emerging commercial mobile augmented reality services, to guarantee mobility and interoperability on a global scale. Some of the key responsibilities of this architecture are to find suitable service providers, to manage the connection with and utilization of such providers, and to allow smooth switching between them whenever the user moves out of the service area of the service provider she is currently connected to. We have studied the potential support technologies for such architectures and propose a way to create an intelligent service connectivity architecture based on current and upcoming wireless networks, an Internet backbone, and mechanisms to manage service connectivity in the upper layers of the protocol stack. In this paper, we explain the key issues of service connectivity, describe the properties of our architecture, and analyze the functionality of an example system. Based on these, we consider our proposition a good solution to the quest for global interoperability in mobile augmented reality services.

  5. Quantum control of ultra-cold atoms: uncovering a novel connection between two paradigms of quantum nonlinear dynamics

    DEFF Research Database (Denmark)

    Wang, Jiao; Mouritzen, Anders Sørrig; Gong, Jiangbin

    2009-01-01

    Controlling the translational motion of cold atoms using optical lattice potentials is of both theoretical and experimental interest. By designing two on-resonance time sequences of kicking optical lattice potentials, a novel connection between two paradigms of nonlinear mapping systems, i.e. the...... sequences of control fields. Extensions of this study are also discussed. The results are intended to open up a new generation of cold-atom experiments of quantum nonlinear dynamics.......Controlling the translational motion of cold atoms using optical lattice potentials is of both theoretical and experimental interest. By designing two on-resonance time sequences of kicking optical lattice potentials, a novel connection between two paradigms of nonlinear mapping systems, i.e. the...

  6. Sequences and series involving the sequence of composite numbers

    Directory of Open Access Journals (Sweden)

    Panayiotis Vlamos

    2002-01-01

    Full Text Available Denoting by pn and cn the nth prime number and the nth composite number, respectively, we prove that both the sequence (xnn≥1, defined by xn=∑k=1n (ck+1−ck / k−pn / n, and the series ∑n=1∞ (pcn−cpn / npn are convergent.

  7. A repetitive sequence assembler based on next-generation sequencing.

    Science.gov (United States)

    Lian, S; Tu, Y; Wang, Y; Chen, X; Wang, L

    2016-01-01

    Repetitive sequences of variable length are common in almost all eukaryotic genomes, and most of them are presumed to have important biomedical functions and can cause genomic instability. Next-generation sequencing (NGS) technologies provide the possibility of identifying capturing these repetitive sequences directly from the NGS data. In this study, we assessed the performances in identifying capturing repeats of leading assemblers, such as Velvet, SOAPdenovo, SGA, MSR-CA, Bambus2, ALLPATHS-LG, and AByss using three real NGS datasets. Our results indicated that most of them performed poorly in capturing the repeats. Consequently, we proposed a repetitive sequence assembler, named NGSReper, for capturing repeats from NGS data. Simulated datasets were used to validate the feasibility of NGSReper. The results indicate that the completeness of capturing repeat is up to 99%. Cross validation was performed in three real NGS datasets, and extensive comparisons indicate that NGSReper performed best in terms of completeness and accuracy in capturing repeats. In conclusion, NGSReper is an appropriate and suitable tool for capturing repeats directly from NGS data. PMID:27525861

  8. DNA Sequencing Using capillary Electrophoresis

    Energy Technology Data Exchange (ETDEWEB)

    Dr. Barry Karger

    2011-05-09

    The overall goal of this program was to develop capillary electrophoresis as the tool to be used to sequence for the first time the Human Genome. Our program was part of the Human Genome Project. In this work, we were highly successful and the replaceable polymer we developed, linear polyacrylamide, was used by the DOE sequencing lab in California to sequence a significant portion of the human genome using the MegaBase multiple capillary array electrophoresis instrument. In this final report, we summarize our efforts and success. We began our work by separating by capillary electrophoresis double strand oligonucleotides using cross-linked polyacrylamide gels in fused silica capillaries. This work showed the potential of the methodology. However, preparation of such cross-linked gel capillaries was difficult with poor reproducibility, and even more important, the columns were not very stable. We improved stability by using non-cross linked linear polyacrylamide. Here, the entangled linear chains could move when osmotic pressure (e.g. sample injection) was imposed on the polymer matrix. This relaxation of the polymer dissipated the stress in the column. Our next advance was to use significantly lower concentrations of the linear polyacrylamide that the polymer could be automatically blown out after each run and replaced with fresh linear polymer solution. In this way, a new column was available for each analytical run. Finally, while testing many linear polymers, we selected linear polyacrylamide as the best matrix as it was the most hydrophilic polymer available. Under our DOE program, we demonstrated initially the success of the linear polyacrylamide to separate double strand DNA. We note that the method is used even today to assay purity of double stranded DNA fragments. Our focus, of course, was on the separation of single stranded DNA for sequencing purposes. In one paper, we demonstrated the success of our approach in sequencing up to 500 bases. Other

  9. Integrated sequence analysis. Final report

    Energy Technology Data Exchange (ETDEWEB)

    Andersson, K.; Pyy, P

    1998-02-01

    The NKS/RAK subprojet 3 `integrated sequence analysis` (ISA) was formulated with the overall objective to develop and to test integrated methodologies in order to evaluate event sequences with significant human action contribution. The term `methodology` denotes not only technical tools but also methods for integration of different scientific disciplines. In this report, we first discuss the background of ISA and the surveys made to map methods in different application fields, such as man machine system simulation software, human reliability analysis (HRA) and expert judgement. Specific event sequences were, after the surveys, selected for application and testing of a number of ISA methods. The event sequences discussed in the report were cold overpressure of BWR, shutdown LOCA of BWR, steam generator tube rupture of a PWR and BWR disturbed signal view in the control room after an external event. Different teams analysed these sequences by using different ISA and HRA methods. Two kinds of results were obtained from the ISA project: sequence specific and more general findings. The sequence specific results are discussed together with each sequence description. The general lessons are discussed under a separate chapter by using comparisons of different case studies. These lessons include areas ranging from plant safety management (design, procedures, instrumentation, operations, maintenance and safety practices) to methodological findings (ISA methodology, PSA,HRA, physical analyses, behavioural analyses and uncertainty assessment). Finally follows a discussion about the project and conclusions are presented. An interdisciplinary study of complex phenomena is a natural way to produce valuable and innovative results. This project came up with structured ways to perform ISA and managed to apply the in practice. The project also highlighted some areas where more work is needed. In the HRA work, development is required for the use of simulators and expert judgement as

  10. Hahn Sequence Space of Modals

    OpenAIRE

    Balasubramanian, T.; Zion Chella Ruth, S.

    2014-01-01

    The history of modal intervals goes back to the very first publications on the topic of interval calculus. The modal interval analysis is used in Computer graphics and Computer Aided Design (CAD), namely, the computation of narrow bounds on Bezier and B-Spline curves. Since modal intervals are used in many fields, we introduce a new sequence space h(gI) called the Hahn sequence space of modal intervals. We have given some new definitions and theorems. Some inclusion relation and some topologi...

  11. $delta$-Quasi Cauchy Sequences

    OpenAIRE

    Cakalli, Huseyin

    2010-01-01

    Recently, a concept of forward continuity and a concept of forward compactness are introduced in the senses that a function $f$ is forward continuous if $\\lim_{n\\to\\infty} \\Delta f(x_{n})=0$ whenever $\\lim_{n\\to\\infty} \\Delta x_{n}=0$,\\; and a subset $E$ of $\\textbf{R}$ is forward compact if any sequence $\\textbf{x}=(x_{n})$ of points in $E$ has a subsequence $\\textbf{z}=(z_{k})=(x_{n_{k}})$ of the sequence $\\textbf{x}$ such that $\\lim_{k\\to \\infty} \\Delta z_{k}=0$ where $\\Delta z_{k}=z_{k+1}...

  12. P-connection on Riemannian almost product manifolds

    CERN Document Server

    Mekerov, Dimitar

    2009-01-01

    In the present work, we introduce a linear connection (preserving the almost product structure and the Riemannian metric) on Riemannian almost product manifolds. This connection, called P-connection, is an analogue of the first canonical connection of Lichnerowicz in the Hermitian geometry and the B-connection in the geometry of the almost complex manifolds with Norden metric. Particularly, we consider the P-connection on a the class of manifolds with nonintegrable almost product structure.

  13. Jubilite: A 4-,8-connected Cubic Structural Pattern in Space Group Pm3

    Directory of Open Access Journals (Sweden)

    Eduardo A. Castro

    2005-05-01

    Full Text Available Abstract: In the course of investigating structural modifications of the 3-,4-connected net known as the Pt3O4 structure-type (waserite, a novel 4-,8-connected structure-type was discovered. This lattice is generated by replacing the 3-connected trigonal planar vertices of the Pt3O4 structure-type with 4-connected tetrahedral vertices, to achieve a structure which possesses a generic empirical formula of JK6L8. In such a topological modification, the four 3-fold axes of the parent cubic, Pm3n, Pt3O4 structure-type are retained. Thus the 4-connected tetrahedral vertices are oriented so as to preserve cubic symmetry in the resulting Pm3, JK6L8 (jubilite lattice. The unit cell contains a single 8-connected cubecentered vertex, six 4-connected distorted square planar vertices and eight 4-connected distorted tetrahedral vertices. It is a Wellsean structure with a Wells point symbol given by (4166484(42826(43838 and a Schläfli symbol of (53/4, 4.2667. This latter index reveals a decrease in the lattice’s polygonality and concomitant increase in the connectivity through the transformation from waserite to jubilite. The topology of the parent waserite lattice (Pt3O4 corresponds to that of the Catalan structures with the Wells point symbol (843(834, which has the Schläfli symbol (8, 3.4285. Finally, it can be seen that a sequence of structure-types starting with waserite (Pt3O4 and moving to jubilite (JK6L8 and finally to fluorite (CaF2 represents a continuous crystallographic structural transformation in which the symmetry and topology undergo concomitant changes from one structure-type (waserite to the other structure-types. The topology of the fluorite lattice, represented by the Wells point symbol (424(462, and the Schläfli symbol (4, 51/3, indicates a discontinuous topological transformation from the intermediate jubilite lattice; like the discontinuous topological transformation from Pt3O4 to JK6L8; in which the

  14. Connecting SNPs in Diabetes: A Spatial Analysis of Meta-GWAS Loci

    Science.gov (United States)

    Schierding, William; O’Sullivan, Justin M.

    2015-01-01

    Meta-analyses of genome-wide association studies (GWAS) have improved our understanding of the genetic foundations of a number of diseases, including diabetes. However, single nucleotide polymorphisms (SNPs) that are identified by GWAS, especially those that fall outside of gene regions, do not always clearly link to the underlying biology. Despite this, these SNPs have often been validated through re-sequencing efforts as not just tag SNPs, but as causative SNPs, and so must play a role in disease development or progression. In this study, we show how the 3D genome (spatial connections) and trans-expression Quantitative Trait Loci connect diabetes loci from different GWAS meta-analyses, informing the backbone of regulatory networks. Our findings include a three-way functional–spatial connection between the TM6SF2, CTRB1–BCAR1, and CELSR2–PSRC1 loci (rs201189528, rs7202844, and rs7202844, respectively) connected through the KCNIP3 and BCAR1/BCAR3 loci, respectively. These spatial hubs serve as an example of how loci in genes with little biological connection to disease come together to contribute to the diabetes phenotype. PMID:26191039

  15. Mutual connectivity analysis (MCA) using generalized radial basis function neural networks for nonlinear functional connectivity network recovery in resting-state functional MRI

    Science.gov (United States)

    D'Souza, Adora M.; Abidin, Anas Zainul; Nagarajan, Mahesh B.; Wismüller, Axel

    2016-03-01

    We investigate the applicability of a computational framework, called mutual connectivity analysis (MCA), for directed functional connectivity analysis in both synthetic and resting-state functional MRI data. This framework comprises of first evaluating non-linear cross-predictability between every pair of time series prior to recovering the underlying network structure using community detection algorithms. We obtain the non-linear cross-prediction score between time series using Generalized Radial Basis Functions (GRBF) neural networks. These cross-prediction scores characterize the underlying functionally connected networks within the resting brain, which can be extracted using non-metric clustering approaches, such as the Louvain method. We first test our approach on synthetic models with known directional influence and network structure. Our method is able to capture the directional relationships between time series (with an area under the ROC curve = 0.92 +/- 0.037) as well as the underlying network structure (Rand index = 0.87 +/- 0.063) with high accuracy. Furthermore, we test this method for network recovery on resting-state fMRI data, where results are compared to the motor cortex network recovered from a motor stimulation sequence, resulting in a strong agreement between the two (Dice coefficient = 0.45). We conclude that our MCA approach is effective in analyzing non-linear directed functional connectivity and in revealing underlying functional network structure in complex systems.

  16. Farey Sequences and Resistor Networks

    Indian Academy of Sciences (India)

    Sameen Ahmed Khan

    2012-05-01

    In this article, we employ the Farey sequence and Fibonacci numbers to establish strict upper and lower bounds for the order of the set of equivalent resistances for a circuit constructed from equal resistors combined in series and in parallel. The method is applicable for networks involving bridge and non-planar circuits.

  17. Ideal-quasi-Cauchy sequences

    CERN Document Server

    Cakalli, Huseyin

    2012-01-01

    An ideal $I$ is a family of subsets of positive integers $\\textbf{N}$ which is closed under taking finite unions and subsets of its elements. A sequence $(x_n)$ of real numbers is said to be $I$-convergent to a real number $L$, if for each \\;$ \\varepsilon> 0$ the set $\\{n:|x_{n}-L|\\geq \\varepsilon\\}$ belongs to $I$. We introduce $I$-ward compactness of a subset of $\\textbf{R}$, the set of real numbers, and $I$-ward continuity of a real function in the senses that a subset $E$ of $\\textbf{R}$ is $I$-ward compact if any sequence $(x_{n})$ of points in $E$ has an $I$-quasi-Cauchy subsequence, and a real function is $I$-ward continuous if it preserves $I$-quasi-Cauchy sequences where a sequence $(x_{n})$ is called to be $I$-quasi-Cauchy when $(\\Delta x_{n})$ is $I$-convergent to 0. We obtain results related to $I$-ward continuity, $I$-ward compactness, ward continuity, ward compactness, ordinary compactness, ordinary continuity, $\\delta$-ward continuity, and slowly oscillating continuity.

  18. Sequences in language and text

    CERN Document Server

    Mikros, George K

    2015-01-01

    The aim of this volume is to present the diverse but highly interesting area of the quantitative analysis of the sequence of various linguistic structures. The collected articles present a wide spectrum of quantitative analyses of linguistic syntagmatic structures and explore novel sequential linguistic entities. This volume will be interesting to all researchers studying linguistics using quantitative methods.

  19. On primes in Lucas sequences

    Czech Academy of Sciences Publication Activity Database

    Křížek, Michal; Somer, L.

    2015-01-01

    Roč. 53, č. 1 (2015), s. 1-23. ISSN 0015-0517 R&D Projects: GA ČR GA14-02067S Institutional support: RVO:67985840 Keywords : Lucas sequence * primes Subject RIV: BA - General Math ematics http://www.fq. math .ca/Abstracts/53-1/somer.pdf

  20. Fractals in DNA sequence analysis

    Institute of Scientific and Technical Information of China (English)

    Yu Zu-Guo(喻祖国); Vo Anh; Gong Zhi-Min(龚志民); Long Shun-Chao(龙顺潮)

    2002-01-01

    Fractal methods have been successfully used to study many problems in physics, mathematics, engineering, finance,and even in biology. There has been an increasing interest in unravelling the mysteries of DNA; for example, how can we distinguish coding and noncoding sequences, and the problems of classification and evolution relationship of organisms are key problems in bioinformatics. Although much research has been carried out by taking into consideration the long-range correlations in DNA sequences, and the global fractal dimension has been used in these works by other people, the models and methods are somewhat rough and the results are not satisfactory. In recent years, our group has introduced a time series model (statistical point of view) and a visual representation (geometrical point of view)to DNA sequence analysis. We have also used fractal dimension, correlation dimension, the Hurst exponent and the dimension spectrum (multifractal analysis) to discuss problems in this field. In this paper, we introduce these fractal models and methods and the results of DNA sequence analysis.

  1. Epigenome Sequencing Comes of Age

    OpenAIRE

    Zhu, Jian-Kang

    2008-01-01

    Epigenetic states are responsive to developmental and environmental signals, and as a consequence a eukaryotic cell can have many different epigenomes. In this issue of Cell, Lister et al. (2008) present the floral epigenome of Arabidopsis using next-generation sequencing technology to analyze both DNA methylation at single-base resolution and the expression of small RNAs.

  2. A virtual substitution of Brouwer choice sequence

    CERN Document Server

    Lange, Klaus

    2009-01-01

    Step by step a substitution of the well known Brouwer choice sequence will be constructed. It begins with an establishing of quasi alternating prime number series followed by a construction of a virtual sequence in sense of the virtual set definition. The last step gives reasons for why this virtual sequence substitutes the choice sequence created by L. E. J. Brouwer.

  3. Efficient algorithms for molecular sequence analysis.

    OpenAIRE

    Karlin, S.; Morris, M.; Ghandour, G; Leung, M Y

    1988-01-01

    Efficient (linear time) algorithms are described for identifying global molecular sequence features allowing for errors including repeats, matches between sequences, dyad symmetry pairings, and other sequence patterns. A multiple sequence alignment algorithm is also described. Specific applications are given to hepatitis B viruses and the J5-C (J, joining; C, constant) region of the immunoglobulin kappa gene.

  4. De novo backbone and sequence design of an idealized alpha/beta-barrel protein: Evidence of stable tertiary structure

    OpenAIRE

    Offredi, Fabrice; Dubail, Fabien; Kischel, Philippe; Sarinski, K.; Stern, A S; Van de Weerdt, Cécile; Hoch, J. C.; Prosperi, Christelle; François, Jean-Marie; Mayo, S. L.; Martial, Joseph

    2003-01-01

    We have designed, synthesized, and characterized a 216 amino acid residue sequence encoding a putative idealized alpha/beta-barrel protein. The design was elaborated in two steps. First, the idealized backbone was defined with geometric parameters representing our target fold: a central eight parallel-stranded beta-sheet surrounded by eight parallel alpha-helices, connected together with short structural turns on both sides of the barrel. An automated sequence selection algorithm, based on th...

  5. Connectivity: An emerging concept for physiotherapy practice.

    Science.gov (United States)

    Nicholls, David A; Atkinson, Karen; Bjorbækmo, Wenche S; Gibson, Barbara E; Latchem, Julie; Olesen, Jens; Ralls, Jenny; Setchell, Jennifer

    2016-01-01

    Having spent their first century anchored to a biomedical model of practice, physiotherapists have been increasingly interested in exploring new models and concepts that will better equip them for serving the health-care needs of 21st century clients/patients. Connectivity offers one such model. With an extensive philosophical background in phenomenology, symbolic interactionism, structuralism, and postmodern research, connectivity resists the prevailing western biomedical view that health professionals should aim to increase people's independence and autonomy, preferring instead to identify and amplify opportunities for collaboration and co-dependence. Connectivity critiques the normalization that underpins modern health care, arguing that our constant search for deviance is building stigma and discrimination into our everyday practice. It offers provocative opportunities for physiotherapists to rethink some of the fundamental tenets of their profession and better align physiotherapy with 21st century societal expectations. In this paper, we provide a background to the place connectivity may play in future health care, and most especially future physiotherapy practice. The paper examines some of the philosophical antecedents that have made connectivity an increasingly interesting and challenging concept in health care today. PMID:27050116

  6. k-Connectivity of Random Key Graphs

    CERN Document Server

    Zhao, Jun; Gligor, Virgil

    2015-01-01

    Random key graphs represent topologies of secure wireless sensor networks that apply the seminal Eschenauer-Gligor random key predistribution scheme to secure communication between sensors. These graphs have received much attention and also been used in diverse application areas beyond secure sensor networks; e.g., cryptanalysis, social networks, and recommender systems. Formally, a random key graph with $n$ nodes is constructed by assigning each node $X_n$ keys selected uniformly at random from a pool of $Y_n$ keys and then putting an undirected edge between any two nodes sharing at least one key. Considerable progress has been made in the literature to analyze connectivity and $k$-connectivity of random key graphs, where $k$-connectivity of a graph ensures connectivity even after the removal of $k$ nodes or $k$ edges. Yet, it still remains an open question for $k$-connectivity in random key graphs under $X_n \\geq 2$ and $X_n = o(\\sqrt{\\ln n})$ (the case of $X_n=1$ is trivial). In this paper, we answer the a...

  7. Resting state functional connectivity in anorexia nervosa.

    Science.gov (United States)

    Phillipou, Andrea; Abel, Larry Allen; Castle, David Jonathan; Hughes, Matthew Edward; Nibbs, Richard Grant; Gurvich, Caroline; Rossell, Susan Lee

    2016-05-30

    Anorexia Nervosa (AN) is a serious psychiatric illness characterised by a disturbance in body image, a fear of weight gain and significantly low body weight. The factors involved in the genesis and maintenance of AN are unclear, though the potential neurobiological underpinnings of the condition are of increasing interest. Through the investigation of functional connectivity of the brain at rest, information relating to neuronal communication and integration of information that may relate to behaviours and cognitive symptoms can be explored. The aim of this study was to investigate functional connectivity of the default mode network, and sensorimotor and visual networks in AN. 26 females with AN and 27 healthy control participants matched for age, gender and premorbid intelligence underwent a resting state functional magnetic resonance imaging scan. Default mode network functional connectivity did not differ between groups. AN participants displayed reduced functional connectivity between the sensorimotor and visual networks, in comparison to healthy controls. This finding is discussed in terms of differences in visuospatial processing in AN and the distortion of body image experienced by these individuals. Overall, the findings suggest that sensorimotor and visual network connectivity may be related to visuospatial processing in AN, though, further research is required. PMID:27111812

  8. Connected Car: Quantified Self becomes Quantified Car

    Directory of Open Access Journals (Sweden)

    Melanie Swan

    2015-02-01

    Full Text Available The automotive industry could be facing a situation of profound change and opportunity in the coming decades. There are a number of influencing factors such as increasing urban and aging populations, self-driving cars, 3D parts printing, energy innovation, and new models of transportation service delivery (Zipcar, Uber. The connected car means that vehicles are now part of the connected world, continuously Internet-connected, generating and transmitting data, which on the one hand can be helpfully integrated into applications, like real-time traffic alerts broadcast to smartwatches, but also raises security and privacy concerns. This paper explores the automotive connected world, and describes five killer QS (Quantified Self-auto sensor applications that link quantified-self sensors (sensors that measure the personal biometrics of individuals like heart rate and automotive sensors (sensors that measure driver and passenger biometrics or quantitative automotive performance metrics like speed and braking activity. The applications are fatigue detection, real-time assistance for parking and accidents, anger management and stress reduction, keyless authentication and digital identity verification, and DIY diagnostics. These kinds of applications help to demonstrate the benefit of connected world data streams in the automotive industry and beyond where, more fundamentally for human progress, the automation of both physical and now cognitive tasks is underway.

  9. 3 SC for grid connected converters

    Energy Technology Data Exchange (ETDEWEB)

    Balogh, A.; Varga, E.; Varjasi, I. [Budapest Univ. of Technology and Economics, Budapest (Hungary). Dept. of Automation and Applied Informatics

    2008-07-01

    There are several grid connected converters in the modern grid system. They are usually converters for renewable energy sources, industrial 4 quadrant drives and other converters with direct current link. These converters are connected to the grid using a 3 phase bridge. Standards dictate the maximal harmonic emission and the maximal reactive current for the grid connected converters. For a converter working at nominal power, this means close to unity power factor. The harmonic emission could be limited with high switching frequency and/or with large harmonic filters. Additional financial issues are the efficiency, the small size and weight. Hardware solutions for increasing efficiency are being sought, although the energy required, especially the renewable energy, is expensive. Efficiency is one of the most important parameters of a grid connected system. The paper discussed the structure of the converter, standard control strategies, the three state control (3SC) method, and power factor correction with 3SC. Experimental results were also presented. It was concluded that with the new developed discontinuous current control, a high efficiency and reliable grid connected converter could be created, which satisfies the prescriptions and limitations of the standards. The auxiliary RPC control could make both inductive and capacitive reactive power and is able to inject current harmonics into the grid compensating the distortion of the grid voltage. 12 refs., 2 tabs.

  10. A systematic framework for functional connectivity measures

    Directory of Open Access Journals (Sweden)

    Huifang Elizabeth Wang

    2014-12-01

    Full Text Available Various methods have been proposed to characterize the functional connectivity between nodes in a network measured with different modalities (electrophysiology, functional magnetic resonance imaging etc.. Since different measures of functional connectivity yield different results for the same dataset, it is important to assess when and how they can be used. In this work, we provide a systematic framework for evaluating the performance of a large range of functional connectivity measures – based upon a comprehensive portfolio of models generating measurable responses. Specifically, we benchmarked 42 methods using 10,000 simulated datasets from 5 different types of generative models with different connectivity structures. Since all functional connectivity methods require the setting of some parameters (window size and number, model order etc., we first optimized these parameters using performance criteria based upon (threshold free ROC analysis. We then evaluated the performance of the methods on data simulated with different types of models. Finally, we assessed the performance of the methods against different levels of signal-to-noise ratios and network configurations. A MATLAB toolbox is provided to perform such analyses using other methods and simulated datasets.

  11. Analysis of repetitive sequence elements containing tRNA-like sequences.

    OpenAIRE

    Lawrence, C B; McDonnell, D P; Ramsey, W J

    1985-01-01

    Several repetitive sequence elements from diverse species share extensive sequence homology with tRNA molecules. Analysis of the tRNA-like sequences within these elements suggest that they have originated from authentic tRNA sequences. Elements containing tRNA-like sequences can be divided into three distinct groups whose members share extensive sequence homology, have similar sequence organization and have unique species distribution. We suggest that these three groups represent independent ...

  12. Picoeukaryotic sequences in the Sargasso Sea metagenome

    OpenAIRE

    Piganeau, Gwenael; Desdevises, Yves; Derelle, Evelyne; Moreau, Herve

    2008-01-01

    Background With genome sequencing becoming more and more affordable, environmental shotgun sequencing of the microorganisms present in an environment generates a challenging amount of sequence data for the scientific community. These sequence data enable the diversity of the microbial world and the metabolic pathways within an environment to be investigated, a previously unthinkable achievement when using traditional approaches. DNA sequence data assembled from extracts of 0.8 μm filtered Sar...

  13. Orthogonal Basis Spreading Sequence for Optimal CDMA

    OpenAIRE

    Tsuda, Hirofumi; Umeno, Ken

    2016-01-01

    Recently, new spreading sequences have been proposed to multiplex the capacity of users. In particular, Weyl spreading sequences have the larger capacity of users than Gold code. This paper shows that Weyl spreading sequences appear in bit restoring model and they are orthogonal basis in the particular situation. This result shows the reason why they have the large capacity and that any spreading sequence are expressed as the sum of Weyl spreading sequences.

  14. Hardware Acceleration of Bioinformatics Sequence Alignment Applications

    OpenAIRE

    Hasan, L.

    2011-01-01

    Biological sequence alignment is an important and challenging task in bioinformatics. Alignment may be defined as an arrangement of two or more DNA or protein sequences to highlight the regions of their similarity. Sequence alignment is used to infer the evolutionary relationship between a set of protein or DNA sequences. An accurate alignment can provide valuable information for experimentation on the newly found sequences. It is indispensable in basic research as well as in practical applic...

  15. Hardware Accelerated Sequence Alignment with Traceback

    OpenAIRE

    Scott Lloyd; Snell, Quinn O

    2009-01-01

    Biological sequence alignment is an essential tool used in molecular biology and biomedical applications. The growing volume of genetic data and the complexity of sequence alignment present a challenge in obtaining alignment results in a timely manner. Known methods to accelerate alignment on reconfigurable hardware only address sequence comparison, limit the sequence length, or exhibit memory and I/O bottlenecks. A space-efficient, global sequence alignment algorithm and architecture is pres...

  16. Some Special Sequences in Fuzzy Graphs

    Directory of Open Access Journals (Sweden)

    Jill K. Mathew

    2016-03-01

    Full Text Available In a fuzzy graph, the edges are mainly classified into α, β and δ. In this paper, some sequences in fuzzy graphs are introduced, whose concepts are based on the classification of edges. Besides, characterizations for blocks in fuzzy graphs and fuzzy trees are obtained. It is shown that β sequence of a fuzzy tree is a zero sequence and α sequence of a block is a binary sequence.

  17. Sequence analysis and editing for bisulphite genomic sequencing projects

    OpenAIRE

    Carr, IM; Valleley, EMA; Cordery, SF; Markham, AF; Bonthron, DT

    2007-01-01

    Bisulphite genomic sequencing is a widely used technique for detailed analysis of the methylation status of a region of DNA. It relies upon the selective deamination of unmethylated cytosine to uracil after treatment with sodium bisulphite, usually followed by PCR amplification of the chosen target region. Since this two-step procedure replaces all unmethylated cytosine bases with thymine, PCR products derived from unmethylated templates contain only three types of nucleotide, in unequal prop...

  18. Cerebro-cerebellar connectivity is increased in primary lateral sclerosis

    Directory of Open Access Journals (Sweden)

    Avner Meoded

    2015-01-01

    Full Text Available Increased functional connectivity in resting state networks was found in several studies of patients with motor neuron disorders, although diffusion tensor imaging studies consistently show loss of white matter integrity. To understand the relationship between structural connectivity and functional connectivity, we examined the structural connections between regions with altered functional connectivity in patients with primary lateral sclerosis (PLS, a long-lived motor neuron disease. Connectivity matrices were constructed from resting state fMRI in 16 PLS patients to identify areas of differing connectivity between patients and healthy controls. Probabilistic fiber tracking was used to examine structural connections between regions of differing connectivity. PLS patients had 12 regions with increased functional connectivity compared to controls, with a predominance of cerebro-cerebellar connections. Increased functional connectivity was strongest between the cerebellum and cortical motor areas and between the cerebellum and frontal and temporal cortex. Fiber tracking detected no difference in connections between regions with increased functional connectivity. We conclude that functional connectivity changes are not strongly based in structural connectivity. Increased functional connectivity may be caused by common inputs, or by reduced selectivity of cortical activation, which could result from loss of intracortical inhibition when cortical afferents are intact.

  19. Simultaneity and generalized connections in general relativity

    International Nuclear Information System (INIS)

    Stationary extended frames in general relativity are considered. The requirement of stationarity allows one to treat the spacetime as a principal fibre bundle over the one-dimensional group of time translations. Over this bundle a connection form establishes the simultaneity between neighbouring events accordingly with the Einstein synchronization convention. The mathematics involved is that of gauge theories where a gauge choice is interpreted as a global simultaneity convention. Then simultaneity in non-stationary frames is investigated: it turns out to be described by a gauge theory in a fibre bundle without structure group, the curvature being given by the Froelicher-Nijenhuis bracket of the connection. The Bianchi identity of this gauge theory is a differential relation between the vorticity field and the acceleration field. In order for the simultaneity connection to be principal, a necessary and sufficient condition on the 4-velocity of the observers is given

  20. Evolution Strategies in the Multipoint Connections Routing

    Directory of Open Access Journals (Sweden)

    L. Krulikovska

    2010-09-01

    Full Text Available Routing of multipoint connections plays an important role in final cost and quality of a found connection. New algorithms with better results are still searched. In this paper, a possibility of using the evolution strategies (ES for routing is presented. Quality of found connection is evaluated from the view of final cost and time spent on a searching procedure. First, parametrical analysis of results of the ES are discussed and compared with the Prim’s algorithm, which was chosen as a representative of the deterministic routing algorithms. Second, ways for improving the ES are suggested and implemented. The obtained results are reviewed. The main improvements are specified and discussed in conclusion.

  1. Subepithelial connective tissue graft: a case report

    Directory of Open Access Journals (Sweden)

    Juliana Alcarás Saraiva

    2011-07-01

    Full Text Available Introduction and objective: Marginal tissue recession represents a common condition in Periodontology. Miller’s Classes I and II recessions, in which the etiological factors are well diagnosed and eliminated, show great predictability of total coverage when the technique of subepithelial connective tissue graft is used. This technique success has been mainly attributed to the double blood supply for graft’s nutrition, originating from the connective tissue of both the periosteum and flap. Case report and conclusion: The authors reported a clinical case in which a Miller’s Class I recession was treated by the surgical technique of subepithelial connective tissue graft, obtaining total coverage, eliminating the aesthetic deficiency and the dentin hypersensitivity complained by patient.

  2. Healthcare e-commerce: connecting with patients.

    Science.gov (United States)

    Joslyn, J S

    2001-01-01

    Electronically connecting with patients is a challenging frontier at which technical hurdles are probably exceeded by political, legal, and other barriers. The rise of consumerism, however, compels a response focused more on revenue and strategic advantage than on pure cost savings. Among the difficulties faced by providers is choosing among various models of connectivity and component function. Emerging models include "free-floating" personal medical records largely independent of the office-based physician, systems with compatible and intertwined physician and consumer relationships using an application services provider office practice system, and systems that connect patients and providers through e-mail, office triage, prescription refills, scheduling, and so on. This article discusses these and other combinations of technology that significantly overcome the barriers involved and that may be woven together to provide solutions uniquely suited to various competitive situations. PMID:11338911

  3. Randomness in fractals, connectivity dimensions, and percolation

    Science.gov (United States)

    Perreau, M.; Levy, J. C. S.

    1989-10-01

    The structural properties of random fractals embedded in a d-dimensional Euclidean space are studied by means of transfer-matrix formalism of fractal sets. For d=1, both global and local approaches have been investigated, leading to the definition of a subdimension that is different from the fractal dimension and depends on the probability distribution. This subdimension is shown to be identical for the global and local approaches; then, the scaling corrections involved in this subdimension are the same for both these approaches. For d>1, only the local approach can be generalized, characterizing the connectivity properties of these structures. There are exactly d subdimensions called connectivity dimensions that prove to be useful to describe percolation properties of these fractals. Several percolation thresholds are shown, and the fractal dimension of the sets at the percolation threshold are related to the connectivity dimensions.

  4. LR: Compact connectivity representation for triangle meshes

    Energy Technology Data Exchange (ETDEWEB)

    Gurung, T; Luffel, M; Lindstrom, P; Rossignac, J

    2011-01-28

    We propose LR (Laced Ring) - a simple data structure for representing the connectivity of manifold triangle meshes. LR provides the option to store on average either 1.08 references per triangle or 26.2 bits per triangle. Its construction, from an input mesh that supports constant-time adjacency queries, has linear space and time complexity, and involves ordering most vertices along a nearly-Hamiltonian cycle. LR is best suited for applications that process meshes with fixed connectivity, as any changes to the connectivity require the data structure to be rebuilt. We provide an implementation of the set of standard random-access, constant-time operators for traversing a mesh, and show that LR often saves both space and traversal time over competing representations.

  5. PROCESS OF ELECTRICAL CONNECTION OF PHOTOVOLTAIC DEVICES

    DEFF Research Database (Denmark)

    2012-01-01

    selective layer that selects for an opposite charge to the first charge selective layer, wherein the first electrode layers for each cell are formed such that the first electrode layer of one cell has no direct electrical connection to the first electrode layer of any other cell, and the second charge...... selective layer is formed such that the second charge selective layer of one cell has no direct electrical connection to the second charge selective layer of any other cell, and wherein the light-harvesting layer is formed such that it is common to at least one pair of adjacent cells of the module; wherein......, for the at least one pair of adjacent cells to which the light harvesting layer is common, a metal layer is formed such that an electrical connection is established between the second charge selective layer of a first one of the at least one pair of adjacent cells and the first electrode layer of a...

  6. DiseaseConnect: a comprehensive web server for mechanism-based disease-disease connections.

    Science.gov (United States)

    Liu, Chun-Chi; Tseng, Yu-Ting; Li, Wenyuan; Wu, Chia-Yu; Mayzus, Ilya; Rzhetsky, Andrey; Sun, Fengzhu; Waterman, Michael; Chen, Jeremy J W; Chaudhary, Preet M; Loscalzo, Joseph; Crandall, Edward; Zhou, Xianghong Jasmine

    2014-07-01

    The DiseaseConnect (http://disease-connect.org) is a web server for analysis and visualization of a comprehensive knowledge on mechanism-based disease connectivity. The traditional disease classification system groups diseases with similar clinical symptoms and phenotypic traits. Thus, diseases with entirely different pathologies could be grouped together, leading to a similar treatment design. Such problems could be avoided if diseases were classified based on their molecular mechanisms. Connecting diseases with similar pathological mechanisms could inspire novel strategies on the effective repositioning of existing drugs and therapies. Although there have been several studies attempting to generate disease connectivity networks, they have not yet utilized the enormous and rapidly growing public repositories of disease-related omics data and literature, two primary resources capable of providing insights into disease connections at an unprecedented level of detail. Our DiseaseConnect, the first public web server, integrates comprehensive omics and literature data, including a large amount of gene expression data, Genome-Wide Association Studies catalog, and text-mined knowledge, to discover disease-disease connectivity via common molecular mechanisms. Moreover, the clinical comorbidity data and a comprehensive compilation of known drug-disease relationships are additionally utilized for advancing the understanding of the disease landscape and for facilitating the mechanism-based development of new drug treatments. PMID:24895436

  7. A review of variables of urban street connectivity for spatial connection

    International Nuclear Information System (INIS)

    Several studies on street connectivity in cities and towns have been modeled on topology, morphology, technology and psychology of people living in the urban environment. Street connectivity means the connection of streets that offers people alternative routes. However, there emerge difficulties to determine the suitable variables and analysis to be chosen in defining the accurate result for studies street connectivity. The aim of this paper is to identify variables of street connectivity by applying GIS and Space Syntax. This paper reviews the variables of street connectivity from 15 past articles done in 1990s to early 2000s from journals of nine disciplines on Environment and Behavior, Planning and Design, Computers, Environment and Urban Systems, Applied Earth Observation and Geo-information, Environment and Planning, Physica A: Statistical Mechanics and its Applications, Environmental Psychology, Social Science and Medicine and Building and Environment. From the review, there are four variables found for street connectivity: link (streets-streets, street-nodes or node-streets, nodes-nodes), accessibility, least-angle, and centrality. Space syntax and GIS are suitable tools to analyze the four variables relating to systematic street systems for pedestrians. This review implies that planners of the street systems, in the aspect of street connectivity in cities and towns, should consider these four variables

  8. A review of variables of urban street connectivity for spatial connection

    Science.gov (United States)

    Mohamad, W. S. N. W.; Said, I.

    2014-02-01

    Several studies on street connectivity in cities and towns have been modeled on topology, morphology, technology and psychology of people living in the urban environment. Street connectivity means the connection of streets that offers people alternative routes. However, there emerge difficulties to determine the suitable variables and analysis to be chosen in defining the accurate result for studies street connectivity. The aim of this paper is to identify variables of street connectivity by applying GIS and Space Syntax. This paper reviews the variables of street connectivity from 15 past articles done in 1990s to early 2000s from journals of nine disciplines on Environment and Behavior, Planning and Design, Computers, Environment and Urban Systems, Applied Earth Observation and Geo-information, Environment and Planning, Physica A: Statistical Mechanics and its Applications, Environmental Psychology, Social Science and Medicine and Building and Environment. From the review, there are four variables found for street connectivity: link (streets-streets, street-nodes or node-streets, nodes-nodes), accessibility, least-angle, and centrality. Space syntax and GIS are suitable tools to analyze the four variables relating to systematic street systems for pedestrians. This review implies that planners of the street systems, in the aspect of street connectivity in cities and towns, should consider these four variables.

  9. Sequence Planning for On-Orbit Assembly of Large Space Truss Structures in a Multirobot Environment

    Institute of Scientific and Technical Information of China (English)

    GUO Jifeng; WANG Ping; CUI Naigang

    2006-01-01

    An approach to sequence planning for on-orbit assembly of large space truss structures in a multirobot environment is presented. A hierarchical representation of large space truss structures at the structural volume element level and strut level is adopted. The representation of connectivity matrix and directed graph is respectively presented at the strut level and SVE level. The multirobot environment that consists of autonomous space robots and struts is supposed. Then the multirobot serial assembly strategy, assembly states, assembly tasks and assembly sequences are described. The assembly sequence planning algorithms at the strut level and SVE level are respectively discussed. The results of the simulations show that this approach is feasible and efficient. Two extensions of this approach include more accurate assessment of the efficiency representation and improvements in planning algorithm. In the future, the assembly sequence planning of more large space truss structures and complex multirobot environments and assembly tasks will be considered.

  10. Starting-up sequence of the AWEC-6 0 wind turbine

    International Nuclear Information System (INIS)

    One of the most critical status of the wind turbines operation is the starting-up sequence and the connection to the grid, due to the actuating loads that could be several times the loads during operation at rated conditions. Due to this fact, the control strategy is very important during the starting-up sequence in order to minimize the loads on the machine. For this purpose it is necessary to analyze the behaviour of the wind turbine during that sequence in different wind conditions and machine conditions This report shows the graphic Information about fifty starting-up sequences of the AWEC-60 wind turbine of 60 m diameter and 1200 kW of rated power, recorded in April 1991 and covering all the operation range between cut-in and cut-out wind speed. (Author) 2 refs

  11. NMR analysis of sequence of toxin II from the sea anemone Radianthus paumotensis

    International Nuclear Information System (INIS)

    Toxin II from Radianthus paumotensis (Rp/sub II/) has been investigated by high-resolution NMR and chemical sequencing methods. Resonance assignments have been obtained for this protein by the sequential approach. NMR assignments could not be made consistent with the previously reported primary sequence for this protein, and chemical methods have been used to determine a sequence with which the NMR data are consistent. Analysis of the 2D NOE spectra shows that the protein secondary structure is comprised of two sequences of β-sheet, probably joined into a distorted continuous sheet, connected by turns and extended loops, without any regular α-helical segments. The residues previously implicated in activity in this class of proteins, D8 and R13, occur in a loop region

  12. Functional connectivity of emotional processing in depression.

    LENUS (Irish Health Repository)

    Carballedo, Angela

    2012-02-01

    OBJECTIVES: The aim of the study is to map a neural network of emotion processing and to identify differences in major depression compared to healthy controls. It is hypothesized that intentional perception of emotional faces activates connections between amygdala (Demir et al.), orbitofrontal cortex (OFC), anterior cingulate cortex (ACC) and prefrontal cortex (PFC) and that frontal-amygdala connections are altered in major depressive disorder (MDD). METHODS: Fifteen medication-free patients with MDD and fifteen healthy controls were enrolled. All subjects were assessed using the same face-matching functional Magnetic Resonance Imaging (fMRI) task, known to involve those areas. Brain activations were obtained using Statistical Parametric Mapping version 5 (SPM5) for data analysis and MARSBAR for extracting of fMRI time series. Then data was analyzed using structural equation modeling (SEM). RESULTS: A valid model was established for the left and the right hemispheres showing a circuit involving ACC, OFC, PFC and AMY. The left hemisphere shows significant lower connectivity strengths in patients than controls, for the pathway that goes from AMY to the OF11, and a trend of higher connectivity in patients for the path that goes from the PF9 to the OF11. In the right hemisphere, patients show lower connectivity coefficients in the paths from the AMY to OF11, from the AMY to ACC, and from the ACC to PF9. By the contrary, controls show lower connectivity strengths for the path that goes from ACC to AMY. CONCLUSIONS: Functional disconnection between limbic and frontal brain regions could be demonstrated using structural equation modeling. The interpretation of these findings could be that there is an emotional processing bias with disconnection bilaterally between amygdala to orbitofrontal cortices and in addition a right disconnection between amygdala and ACC as well as between ACC and prefrontal cortex possibly in line with a more prominent role for the right hemisphere

  13. Connected brains and minds – the UMCD repository for brain connectivity matrices

    Science.gov (United States)

    Brown, Jesse A.; Van Horn, John D.

    2016-01-01

    We describe the USC Multimodal Connectivity Database (http://umcd.humanconnectomeproject.org ), an interactive web-based platform for brain connectivity matrix sharing and analysis. The site enables users to download connectivity matrices shared by other users, upload matrices from their own published studies, or select a specific matrix and perform a realtime graph theory-based analysis and visualization of network properties. The data shared on the site span a broad spectrum of functional and structural brain connectivity information from humans across the entire age range (fetal to age 89), representing an array of different neuropsychiatric and neurodegenerative disease populations (autism spectrum disorder, ADHD, and APOE-4 carriers). An analysis combining 7 different datasets shared on the site illustrates the diversity of the data and the potential for yielding deeper insight by assessing new connectivity matrices with respect to population-wide network properties represented in the UMCD. PMID:26311606

  14. Connected brains and minds--The UMCD repository for brain connectivity matrices.

    Science.gov (United States)

    Brown, Jesse A; Van Horn, John D

    2016-01-01

    We describe the USC Multimodal Connectivity Database (http://umcd.humanconnectomeproject.org), an interactive web-based platform for brain connectivity matrix sharing and analysis. The site enables users to download connectivity matrices shared by other users, upload matrices from their own published studies, or select a specific matrix and perform a real-time graph theory-based analysis and visualization of network properties. The data shared on the site span a broad spectrum of functional and structural brain connectivity information from humans across the entire age range (fetal to age 89), representing an array of different neuropsychiatric and neurodegenerative disease populations (autism spectrum disorder, ADHD, and APOE-4 carriers). An analysis combining 7 different datasets shared on the site illustrates the diversity of the data and the potential for yielding deeper insight by assessing new connectivity matrices with respect to population-wide network properties represented in the UMCD. PMID:26311606

  15. Structures connectives de l'intrication quantique

    OpenAIRE

    Dugowson, Stéphane

    2014-01-01

    Dans ce texte, après des rappels d'une part sur la notion de structure connective et d'autre part sur les formalismes de la mécanique quantique, nous associons certaines familles de structures connectives à tout état quantique intriquant un nombre fini quelconque de particules, ainsi qu'à tout "dispositif de mesure", portant sur de tels états. Cela nous permet finalement de définir un nouvel outil de classification de l'intrication quantique : l'ordre connectif.

  16. AARP iPad Tech to Connect

    CERN Document Server

    Boyd, Barbara

    2012-01-01

    The world is at your fingertips with iPad! AARP iPad: Tech to Connect introduces you to the world?s most popular tablet device, the iPad, and all the amazing things it has to offer. In clear, non-technical language, this book guides you through registering and setting up your iPad, getting acquainted with the multitouch interface, navigating around the screen, finding and downloading apps, reading books, listening to music, watching videos, surfing the web, and communicating with friends and family. Developed in partnership with AARP and dedicated to helping readers stay connected with friends

  17. Supervised hub-detection for brain connectivity

    DEFF Research Database (Denmark)

    Kasenburg, Niklas; Liptrot, Matthew George; Reislev, Nina Linde;

    2016-01-01

    A structural brain network consists of physical connections between brain regions. Brain network analysis aims to find features associated with a parameter of interest through supervised prediction models such as regression. Unsupervised preprocessing steps like clustering are often applied......-detection and a linear regression using the original network connections as features. The results show that the SHD is able to retain regression performance, while still finding hubs that represent the underlying variation in the population. Although here we applied the SHD to brain networks, it can be applied to any...

  18. Cold electrical connection for FAIR/ SIS100

    CERN Document Server

    Kauschke, M; Quack, H

    2009-01-01

    The Facility of Antiproton and Ion Research (FAIR) will be an international centre for atomic-, plasma- and nuclear- physics, located next to Gesellschaft für Schwerionenforschung (GSI), Darmstadt. FAIR will be composed from two synchrotrons and four storage rings. Both synchrotrons, SIS100 and SIS300, are designed with superconducting magnets. For radiation protection reasons and landscaping restrictions the synchrotrons will be placed underground, whereas the power supplies will be placed within three service buildings above ground level. To save space and refrigeration power a superconducting electrical connection will be implemented. The mechanical and thermal design of this connection will be presented in the paper.

  19. Coupled Intrinsic Connectivity Distribution analysis: a method for exploratory connectivity analysis of paired FMRI data.

    Directory of Open Access Journals (Sweden)

    Dustin Scheinost

    Full Text Available We present a novel voxel-based connectivity approach for paired functional magnetic resonance imaging (fMRI data collected under two different conditions labeled the Coupled Intrinsic Connectivity Distribution (coupled-ICD. Our proposed method jointly models both conditions to incorporate additional paired information into the connectivity metric. Voxel-based connectivity holds promise as a clinical tool to characterize a wide range of neurological and psychiatric diseases, and monitor their treatment. As such, examining paired connectivity data such as scans acquired pre- and post-intervention is an important application for connectivity methodologically. When presented with data from paired conditions, conventional voxel-based methods analyze each condition separately. However, summarizing each connection separately can misrepresent patterns of changes in connectivity. We show that commonly used methods can underestimate functional changes and subsequently introduce and evaluate our solution to this problem, the coupled-ICD metric, using two studies: 1 healthy controls scanned awake and under anesthesia, and 2 cocaine-dependent subjects and healthy controls scanned while being presented with relaxing or drug-related imagery cues. The coupled-ICD approach detected differences between paired conditions in similar brain regions as the conventional approaches while also revealing additional changes in regions not identified using conventional voxel-based connectivity analyses. Follow-up seed-based analyses on data independent from the voxel-based results also showed connectivity differences between conditions in regions detected by coupled-ICD. This approach of jointly analyzing paired resting-state scans provides a new and important tool with many applications for clinical and basic neuroscience research.

  20. 4SALE – A tool for synchronous RNA sequence and secondary structure alignment and editing

    Directory of Open Access Journals (Sweden)

    Schultz Jörg

    2006-11-01

    Full Text Available Abstract Background In sequence analysis the multiple alignment builds the fundament of all proceeding analyses. Errors in an alignment could strongly influence all succeeding analyses and therefore could lead to wrong predictions. Hand-crafted and hand-improved alignments are necessary and meanwhile good common practice. For RNA sequences often the primary sequence as well as a secondary structure consensus is well known, e.g., the cloverleaf structure of the t-RNA. Recently, some alignment editors are proposed that are able to include and model both kinds of information. However, with the advent of a large amount of reliable RNA sequences together with their solved secondary structures (available from e.g. the ITS2 Database, we are faced with the problem to handle sequences and their associated secondary structures synchronously. Results 4SALE fills this gap. The application allows a fast sequence and synchronous secondary structure alignment for large data sets and for the first time synchronous manual editing of aligned sequences and their secondary structures. This study describes an algorithm for the synchronous alignment of sequences and their associated secondary structures as well as the main features of 4SALE used for further analyses and editing. 4SALE builds an optimal and unique starting point for every RNA sequence and structure analysis. Conclusion 4SALE, which provides an user-friendly and intuitive interface, is a comprehensive toolbox for RNA analysis based on sequence and secondary structure information. The program connects sequence and structure databases like the ITS2 Database to phylogeny programs as for example the CBCAnalyzer. 4SALE is written in JAVA and therefore platform independent. The software is freely available and distributed from the website at http://4sale.bioapps.biozentrum.uni-wuerzburg.de