WorldWideScience

Sample records for biomolecular information processing

  1. High-speed AFM for Studying Dynamic Biomolecular Processes

    Science.gov (United States)

    Ando, Toshio

    2008-03-01

    Biological molecules show their vital activities only in aqueous solutions. It had been one of dreams in biological sciences to directly observe biological macromolecules (protein, DNA) at work under a physiological condition because such observation is straightforward to understanding their dynamic behaviors and functional mechanisms. Optical microscopy has no sufficient spatial resolution and electron microscopy is not applicable to in-liquid samples. Atomic force microscopy (AFM) can visualize molecules in liquids at high resolution but its imaging rate was too low to capture dynamic biological processes. This slow imaging rate is because AFM employs mechanical probes (cantilevers) and mechanical scanners to detect the sample height at each pixel. It is quite difficult to quickly move a mechanical device of macroscopic size with sub-nanometer accuracy without producing unwanted vibrations. It is also difficult to maintain the delicate contact between a probe tip and fragile samples. Two key techniques are required to realize high-speed AFM for biological research; fast feedback control to maintain a weak tip-sample interaction force and a technique to suppress mechanical vibrations of the scanner. Various efforts have been carried out in the past decade to materialize high-speed AFM. The current high-speed AFM can capture images on video at 30-60 frames/s for a scan range of 250nm and 100 scan lines, without significantly disturbing week biomolecular interaction. Our recent studies demonstrated that this new microscope can reveal biomolecular processes such as myosin V walking along actin tracks and association/dissociation dynamics of chaperonin GroEL-GroES that occurs in a negatively cooperative manner. The capacity of nanometer-scale visualization of dynamic processes in liquids will innovate on biological research. In addition, it will open a new way to study dynamic chemical/physical processes of various phenomena that occur at the liquid-solid interfaces.

  2. Processivity and collectivity of biomolecular motors extracting membrane nanotubes

    Science.gov (United States)

    Fontenele Araujo, Francisco; Storm, Cornelis

    2012-07-01

    Biomolecular motors can pull and viscously drag membranes. The resulting elongations include cell protrusions, tether networks, and sensorial tentacles. Here we focus on the extraction of a single tube from a vesicle. Via a force balance coupled to binding kinetics, we analytically determine the phase diagram of tube formation as function of the motor processivity, the surface viscosity of the membrane ηm', and the density of motors on the vesicle ρ. Three tubulation mechanisms are identified: (i) tip pulling, due to the accumulation of motors at the leading edge of the membrane, (ii) viscous drag, emergent from the translation of motors along the tube, and (iii) hybrid extraction, such that tip pulling and viscous drag are equally important. For experimental values of ηm' and ρ, we find that the growth of bionanotubes tends to be driven by viscous forces, whereas artificial membranes are dominated by tip pulling.

  3. In situ monitoring of biomolecular processes in living systems using surface-enhanced Raman scattering

    Science.gov (United States)

    Altunbek, Mine; Kelestemur, Seda; Culha, Mustafa

    2015-12-01

    Surface-enhanced Raman scattering (SERS) continues to strive to gather molecular level information from dynamic biological systems. It is our ongoing effort to utilize the technique for understanding of the biomolecular processes in living systems such as eukaryotic and prokaryotic cells. In this study, the technique is investigated to identify cell death mechanisms in 2D and 3D in vitro cell culture models, which is a very important process in tissue engineering and pharmaceutical applications. Second, in situ biofilm formation monitoring is investigated to understand how microorganisms respond to the environmental stimuli, which inferred information can be used to interfere with biofilm formation and fight against their pathogenic activity.

  4. hPDB – Haskell library for processing atomic biomolecular structures in protein data bank format

    OpenAIRE

    Gajda, Michał Jan

    2013-01-01

    Background Protein DataBank file format is used for the majority of biomolecular data available today. Haskell is a lazy functional language that enjoys a high-level class-based type system, a growing collection of useful libraries and a reputation for efficiency. Findings I present a fast library for processing biomolecular data in the Protein Data Bank format. I present benchmarks indicating that this library is faster than other frequently used Protein Data Bank parsing programs. The propo...

  5. HPDB-Haskell library for processing atomic biomolecular structures in Protein Data Bank format.

    Science.gov (United States)

    Gajda, Michał Jan

    2013-11-23

    Protein DataBank file format is used for the majority of biomolecular data available today. Haskell is a lazy functional language that enjoys a high-level class-based type system, a growing collection of useful libraries and a reputation for efficiency. I present a fast library for processing biomolecular data in the Protein Data Bank format. I present benchmarks indicating that this library is faster than other frequently used Protein Data Bank parsing programs. The proposed library also features a convenient iterator mechanism, and a simple API modeled after BioPython. I set a new standard for convenience and efficiency of Protein Data Bank processing in a Haskell library, and release it to open source.

  6. Biomolecular Modeling in a Process Dynamics and Control Course

    Science.gov (United States)

    Gray, Jeffrey J.

    2006-01-01

    I present modifications to the traditional course entitled, "Process dynamics and control," which I renamed "Modeling, dynamics, and control of chemical and biological processes." Additions include the central dogma of biology, pharmacokinetic systems, population balances, control of gene transcription, and large­-scale…

  7. Prediction of Biomolecular Complexes

    KAUST Repository

    Vangone, Anna

    2017-04-12

    Almost all processes in living organisms occur through specific interactions between biomolecules. Any dysfunction of those interactions can lead to pathological events. Understanding such interactions is therefore a crucial step in the investigation of biological systems and a starting point for drug design. In recent years, experimental studies have been devoted to unravel the principles of biomolecular interactions; however, due to experimental difficulties in solving the three-dimensional (3D) structure of biomolecular complexes, the number of available, high-resolution experimental 3D structures does not fulfill the current needs. Therefore, complementary computational approaches to model such interactions are necessary to assist experimentalists since a full understanding of how biomolecules interact (and consequently how they perform their function) only comes from 3D structures which provide crucial atomic details about binding and recognition processes. In this chapter we review approaches to predict biomolecular complexesBiomolecular complexes, introducing the concept of molecular dockingDocking, a technique which uses a combination of geometric, steric and energetics considerations to predict the 3D structure of a biological complex starting from the individual structures of its constituent parts. We provide a mini-guide about docking concepts, its potential and challenges, along with post-docking analysis and a list of related software.

  8. Computational methods to study the structure and dynamics of biomolecules and biomolecular processes from bioinformatics to molecular quantum mechanics

    CERN Document Server

    2014-01-01

    Since the second half of the 20th century machine computations have played a critical role in science and engineering. Computer-based techniques have become especially important in molecular biology, since they often represent the only viable way to gain insights into the behavior of a biological system as a whole. The complexity of biological systems, which usually needs to be analyzed on different time- and size-scales and with different levels of accuracy, requires the application of different approaches, ranging from comparative analysis of sequences and structural databases, to the analysis of networks of interdependence between cell components and processes, through coarse-grained modeling to atomically detailed simulations, and finally to molecular quantum mechanics. This book provides a comprehensive overview of modern computer-based techniques for computing the structure, properties and dynamics of biomolecules and biomolecular processes. The twenty-two chapters, written by scientists from all over t...

  9. Design of Flow Systems for Improved Networking and Reduced Noise in Biomolecular Signal Processing in Biocomputing and Biosensing Applications

    Directory of Open Access Journals (Sweden)

    Arjun Verma

    2016-07-01

    Full Text Available We consider flow systems that have been utilized for small-scale biomolecular computing and digital signal processing in binary-operating biosensors. Signal measurement is optimized by designing a flow-reversal cuvette and analyzing the experimental data to theoretically extract the pulse shape, as well as reveal the level of noise it possesses. Noise reduction is then carried out numerically. We conclude that this can be accomplished physically via the addition of properly designed well-mixing flow-reversal cell(s as an integral part of the flow system. This approach should enable improved networking capabilities and potentially not only digital but analog signal-processing in such systems. Possible applications in complex biocomputing networks and various sense-and-act systems are discussed.

  10. Design of Flow Systems for Improved Networking and Reduced Noise in Biomolecular Signal Processing in Biocomputing and Biosensing Applications.

    Science.gov (United States)

    Verma, Arjun; Fratto, Brian E; Privman, Vladimir; Katz, Evgeny

    2016-07-05

    We consider flow systems that have been utilized for small-scale biomolecular computing and digital signal processing in binary-operating biosensors. Signal measurement is optimized by designing a flow-reversal cuvette and analyzing the experimental data to theoretically extract the pulse shape, as well as reveal the level of noise it possesses. Noise reduction is then carried out numerically. We conclude that this can be accomplished physically via the addition of properly designed well-mixing flow-reversal cell(s) as an integral part of the flow system. This approach should enable improved networking capabilities and potentially not only digital but analog signal-processing in such systems. Possible applications in complex biocomputing networks and various sense-and-act systems are discussed.

  11. Laser photodissociation and spectroscopy of mass-separated biomolecular ions

    CERN Document Server

    Polfer, Nicolas C

    2014-01-01

    This lecture notes book presents how enhanced structural information of biomolecular ions can be obtained from interaction with photons of specific frequency - laser light. The methods described in the book ""Laser photodissociation and spectroscopy of mass-separated biomolecular ions"" make use of the fact that the discrete energy and fast time scale of photoexcitation can provide more control in ion activation. This activation is the crucial process producing structure-informative product ions that cannot be generated with more conventional heating methods, such as collisional activation. Th

  12. Conducting polymer based biomolecular electronic devices

    Indian Academy of Sciences (India)

    Biomolecular electronics is rapidly evolving from physics, chemistry, biology, electronics and information technology. Organic materials such as proteins, pigments and conducting polymers have been considered as alternatives for carrying out the functions that are presently being performed by semiconductor silicon.

  13. Converting biomolecular modelling data based on an XML representation.

    Science.gov (United States)

    Sun, Yudong; McKeever, Steve

    2008-08-25

    Biomolecular modelling has provided computational simulation based methods for investigating biological processes from quantum chemical to cellular levels. Modelling such microscopic processes requires atomic description of a biological system and conducts in fine timesteps. Consequently the simulations are extremely computationally demanding. To tackle this limitation, different biomolecular models have to be integrated in order to achieve high-performance simulations. The integration of diverse biomolecular models needs to convert molecular data between different data representations of different models. This data conversion is often non-trivial, requires extensive human input and is inevitably error prone. In this paper we present an automated data conversion method for biomolecular simulations between molecular dynamics and quantum mechanics/molecular mechanics models. Our approach is developed around an XML data representation called BioSimML (Biomolecular Simulation Markup Language). BioSimML provides a domain specific data representation for biomolecular modelling which can effciently support data interoperability between different biomolecular simulation models and data formats.

  14. Biomolecular Science (Fact Sheet)

    Energy Technology Data Exchange (ETDEWEB)

    2012-04-01

    A brief fact sheet about NREL Photobiology and Biomolecular Science. The research goal of NREL's Biomolecular Science is to enable cost-competitive advanced lignocellulosic biofuels production by understanding the science critical for overcoming biomass recalcitrance and developing new product and product intermediate pathways. NREL's Photobiology focuses on understanding the capture of solar energy in photosynthetic systems and its use in converting carbon dioxide and water directly into hydrogen and advanced biofuels.

  15. Quantum information processing

    National Research Council Canada - National Science Library

    Leuchs, Gerd; Beth, Thomas

    2003-01-01

    ... . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1.5 SimulationofHamiltonians... References... 1 1 1 3 5 8 10 2 Quantum Information Processing and Error Correction with Jump Codes (G. Alber, M. Mussinger...

  16. Hybrid quantum information processing

    Energy Technology Data Exchange (ETDEWEB)

    Furusawa, Akira [Department of Applied Physics, School of Engineering, The University of Tokyo (Japan)

    2014-12-04

    I will briefly explain the definition and advantage of hybrid quantum information processing, which is hybridization of qubit and continuous-variable technologies. The final goal would be realization of universal gate sets both for qubit and continuous-variable quantum information processing with the hybrid technologies. For that purpose, qubit teleportation with a continuousvariable teleporter is one of the most important ingredients.

  17. Quantum Information Processing

    CERN Document Server

    Leuchs, Gerd

    2005-01-01

    Quantum processing and communication is emerging as a challenging technique at the beginning of the new millennium. This is an up-to-date insight into the current research of quantum superposition, entanglement, and the quantum measurement process - the key ingredients of quantum information processing. The authors further address quantum protocols and algorithms. Complementary to similar programmes in other countries and at the European level, the German Research Foundation (DFG) started a focused research program on quantum information in 1999. The contributions - written by leading experts - bring together the latest results in quantum information as well as addressing all the relevant questions

  18. Biomolecular analysis of elastic fibre molecules.

    Science.gov (United States)

    Cain, Stuart A; Raynal, Bertrand; Hodson, Nigel; Shuttleworth, Adrian; Kielty, Cay M

    2008-05-01

    Elastic fibres are macromolecular extracellular matrix assemblies that endow dynamic connective tissues such as arteries, lungs and skin with the property of elastic recoil. Here, we describe how we have purified elastic fibre molecules and then analysed them using a range of biochemical and biomolecular approaches. Such approaches have provided powerful insights into the complex hierarchical processes of extracellular matrix assembly. We outline molecular interaction and kinetics assays using Biacore, biophysical approaches such as multi-angle laser light scattering and analytical ultracentrifugation which provide information on molecular and macromolecular shape and mass in solution, the visualisation of molecules and assemblies using microscopy approaches such as atomic force microscopy and environmental scanning electron microscopy, and compositional analysis of macromolecular complexes using mass spectrometry. Data from these in vitro analytical approaches can be combined to develop powerful new models of elastic fibre assembly.

  19. PREFACE: Quantum information processing

    Science.gov (United States)

    Briggs, Andrew; Ferry, David; Stoneham, Marshall

    2006-05-01

    Microelectronics and the classical information technologies transformed the physics of semiconductors. Photonics has given optical materials a new direction. Quantum information technologies, we believe, will have immense impact on condensed matter physics. The novel systems of quantum information processing need to be designed and made. Their behaviours must be manipulated in ways that are intrinsically quantal and generally nanoscale. Both in this special issue and in previous issues (see e.g., Spiller T P and Munro W J 2006 J. Phys.: Condens. Matter 18 V1-10) we see the emergence of new ideas that link the fundamentals of science to the pragmatism of market-led industry. We hope these papers will be followed by many others on quantum information processing in the Journal of Physics: Condensed Matter.

  20. Information Processing of Trauma.

    Science.gov (United States)

    Hartman, Carol R.; Burgess, Ann W.

    1993-01-01

    This paper presents a neuropsychosocial model of information processing to explain a victimization experience, specifically child sexual abuse. It surveys the relation of sensation, perception, and cognition as a systematic way to provide a framework for studying human behavior and describing human response to traumatic events. (Author/JDD)

  1. Conducting polymer based biomolecular electronic devices

    Indian Academy of Sciences (India)

    Abstract. Biomolecular electronics is rapidly evolving from physics, chemistry, biology, electron- ics and information technology. Organic materials such as proteins, pigments and conducting poly- mers have been considered as alternatives for carrying out the functions that are presently being performed by semiconductor ...

  2. Introduction to information processing

    CERN Document Server

    Dietel, Harvey M

    2014-01-01

    An Introduction to Information Processing provides an informal introduction to the computer field. This book introduces computer hardware, which is the actual computing equipment.Organized into three parts encompassing 12 chapters, this book begins with an overview of the evolution of personal computing and includes detailed case studies on two of the most essential personal computers for the 1980s, namely, the IBM Personal Computer and Apple's Macintosh. This text then traces the evolution of modern computing systems from the earliest mechanical calculating devices to microchips. Other chapte

  3. Programming in biomolecular computation

    DEFF Research Database (Denmark)

    Hartmann, Lars Røeboe; Jones, Neil; Simonsen, Jakob Grue

    2011-01-01

    Our goal is to provide a top-down approach to biomolecular computation. In spite of widespread discussion about connections between biology and computation, one question seems notable by its absence: Where are the programs? We identify a number of common features in programming that seem...... conspicuously absent from the literature on biomolecular computing; to partially redress this absence, we introduce a model of computation that is evidently programmable, by programs reminiscent of low-level computer machine code; and at the same time biologically plausible: its functioning is defined...... by a single and relatively small set of chemical-like reaction rules. Further properties: the model is stored-program: programs are the same as data, so programs are not only executable, but are also compilable and interpretable. It is universal: all computable functions can be computed (in natural ways...

  4. Programming in biomolecular computation

    DEFF Research Database (Denmark)

    Hartmann, Lars Røeboe; Jones, Neil; Simonsen, Jakob Grue

    2011-01-01

    conspicuously absent from the literature on biomolecular computing; to partially redress this absence, we introduce a model of computation that is evidently programmable, by programs reminiscent of low-level computer machine code; and at the same time biologically plausible: its functioning is defined...... by a single and relatively small set of chemical-like reaction rules. Further properties: the model is stored-program: programs are the same as data, so programs are not only executable, but are also compilable and interpretable. It is universal: all computable functions can be computed (in natural ways......Our goal is to provide a top-down approach to biomolecular computation. In spite of widespread discussion about connections between biology and computation, one question seems notable by its absence: Where are the programs? We identify a number of common features in programming that seem...

  5. Information-processing genes

    International Nuclear Information System (INIS)

    Tahir Shah, K.

    1995-01-01

    There are an estimated 100,000 genes in the human genome of which 97% is non-coding. On the other hand, bacteria have little or no non-coding DNA. Non-coding region includes introns, ALU sequences, satellite DNA, and other segments not expressed as proteins. Why it exists? Why nature has kept non-coding during the long evolutionary period if it has no role in the development of complex life forms? Does complexity of a species somehow correlated to the existence of apparently useless sequences? What kind of capability is encoded within such nucleotide sequences that is a necessary, but not a sufficient condition for the evolution of complex life forms, keeping in mind the C-value paradox and the omnipresence of non-coding segments in higher eurkaryotes and also in many archea and prokaryotes. The physico-chemical description of biological processes is hardware oriented and does not highlight algorithmic or information processing aspect. However, an algorithm without its hardware implementation is useless as much as hardware without its capability to run an algorithm. The nature and type of computation an information-processing hardware can perform depends only on its algorithm and the architecture that reflects the algorithm. Given that enormously difficult tasks such as high fidelity replication, transcription, editing and regulation are all achieved within a long linear sequence, it is natural to think that some parts of a genome are involved is these tasks. If some complex algorithms are encoded with these parts, then it is natural to think that non-coding regions contain processing-information algorithms. A comparison between well-known automatic sequences and sequences constructed out of motifs is found in all species proves the point: noncoding regions are a sort of ''hardwired'' programs, i.e., they are linear representations of information-processing machines. Thus in our model, a noncoding region, e.g., an intron contains a program (or equivalently, it is

  6. Photonic Quantum Information Processing

    International Nuclear Information System (INIS)

    Walther, P.

    2012-01-01

    The advantage of the photon's mobility makes optical quantum system ideally suited for delegated quantum computation. I will present results for the realization for a measurement-based quantum network in a client-server environment, where quantum information is securely communicated and computed. Related to measurement-based quantum computing I will discuss a recent experiment showing that quantum discord can be used as resource for the remote state preparation, which might shine new light on the requirements for quantum-enhanced information processing. Finally, I will briefly review recent photonic quantum simulation experiments of four frustrated Heisenberg-interactions spins and present an outlook of feasible simulation experiments with more complex interactions or random walk structures. As outlook I will discuss the current status of new quantum technology for improving the scalability of photonic quantum systems by using superconducting single-photon detectors and tailored light-matter interactions. (author)

  7. Advanced information processing system

    Science.gov (United States)

    Lala, J. H.

    1984-01-01

    Design and performance details of the advanced information processing system (AIPS) for fault and damage tolerant data processing on aircraft and spacecraft are presented. AIPS comprises several computers distributed throughout the vehicle and linked by a damage tolerant data bus. Most I/O functions are available to all the computers, which run in a TDMA mode. Each computer performs separate specific tasks in normal operation and assumes other tasks in degraded modes. Redundant software assures that all fault monitoring, logging and reporting are automated, together with control functions. Redundant duplex links and damage-spread limitation provide the fault tolerance. Details of an advanced design of a laboratory-scale proof-of-concept system are described, including functional operations.

  8. Converting Biomolecular Modelling Data Based on an XML Representation

    Directory of Open Access Journals (Sweden)

    Sun Yudong

    2008-06-01

    Full Text Available Biomolecular modelling has provided computational simulation based methods for investigating biological processes from quantum chemical to cellular levels. Modelling such microscopic processes requires atomic description of a biological system and conducts in fine timesteps. Consequently the simulations are extremely computationally demanding. To tackle this limitation, different biomolecular models have to be integrated in order to achieve high-performance simulations. The integration of diverse biomolecular models needs to convert molecular data between different data representations of different models. This data conversion is often non-trivial, requires extensive human input and is inevitably error prone. In this paper we present an automated data conversion method for biomolecular simulations between molecular dynamics and quantum mechanics/molecular mechanics models. Our approach is developed around an XML data representation called BioSimML (Biomolecular Simulation Markup Language. BioSimML provides a domain specific data representation for biomolecular modelling which can effciently support data interoperability between different biomolecular simulation models and data formats.

  9. Weather Information Processing

    Science.gov (United States)

    1991-01-01

    Science Communications International (SCI), formerly General Science Corporation, has developed several commercial products based upon experience acquired as a NASA Contractor. Among them are METPRO, a meteorological data acquisition and processing system, which has been widely used, RISKPRO, an environmental assessment system, and MAPPRO, a geographic information system. METPRO software is used to collect weather data from satellites, ground-based observation systems and radio weather broadcasts to generate weather maps, enabling potential disaster areas to receive advance warning. GSC's initial work for NASA Goddard Space Flight Center resulted in METPAK, a weather satellite data analysis system. METPAK led to the commercial METPRO system. The company also provides data to other government agencies, U.S. embassies and foreign countries.

  10. An Overview of Biomolecular Event Extraction from Scientific Documents.

    Science.gov (United States)

    Vanegas, Jorge A; Matos, Sérgio; González, Fabio; Oliveira, José L

    2015-01-01

    This paper presents a review of state-of-the-art approaches to automatic extraction of biomolecular events from scientific texts. Events involving biomolecules such as genes, transcription factors, or enzymes, for example, have a central role in biological processes and functions and provide valuable information for describing physiological and pathogenesis mechanisms. Event extraction from biomedical literature has a broad range of applications, including support for information retrieval, knowledge summarization, and information extraction and discovery. However, automatic event extraction is a challenging task due to the ambiguity and diversity of natural language and higher-level linguistic phenomena, such as speculations and negations, which occur in biological texts and can lead to misunderstanding or incorrect interpretation. Many strategies have been proposed in the last decade, originating from different research areas such as natural language processing, machine learning, and statistics. This review summarizes the most representative approaches in biomolecular event extraction and presents an analysis of the current state of the art and of commonly used methods, features, and tools. Finally, current research trends and future perspectives are also discussed.

  11. An Overview of Biomolecular Event Extraction from Scientific Documents

    Directory of Open Access Journals (Sweden)

    Jorge A. Vanegas

    2015-01-01

    Full Text Available This paper presents a review of state-of-the-art approaches to automatic extraction of biomolecular events from scientific texts. Events involving biomolecules such as genes, transcription factors, or enzymes, for example, have a central role in biological processes and functions and provide valuable information for describing physiological and pathogenesis mechanisms. Event extraction from biomedical literature has a broad range of applications, including support for information retrieval, knowledge summarization, and information extraction and discovery. However, automatic event extraction is a challenging task due to the ambiguity and diversity of natural language and higher-level linguistic phenomena, such as speculations and negations, which occur in biological texts and can lead to misunderstanding or incorrect interpretation. Many strategies have been proposed in the last decade, originating from different research areas such as natural language processing, machine learning, and statistics. This review summarizes the most representative approaches in biomolecular event extraction and presents an analysis of the current state of the art and of commonly used methods, features, and tools. Finally, current research trends and future perspectives are also discussed.

  12. Biomolecular EPR spectroscopy

    CERN Document Server

    Hagen, Wilfred Raymond

    2008-01-01

    Comprehensive, Up-to-Date Coverage of Spectroscopy Theory and its Applications to Biological SystemsAlthough a multitude of books have been published about spectroscopy, most of them only occasionally refer to biological systems and the specific problems of biomolecular EPR (bioEPR). Biomolecular EPR Spectroscopy provides a practical introduction to bioEPR and demonstrates how this remarkable tool allows researchers to delve into the structural, functional, and analytical analysis of paramagnetic molecules found in the biochemistry of all species on the planet. A Must-Have Reference in an Intrinsically Multidisciplinary FieldThis authoritative reference seamlessly covers all important bioEPR applications, including low-spin and high-spin metalloproteins, spin traps and spin lables, interaction between active sites, and redox systems. It is loaded with practical tricks as well as do's and don'ts that are based on the author's 30 years of experience in the field. The book also comes with an unprecedented set of...

  13. Programming in biomolecular computation

    DEFF Research Database (Denmark)

    Hartmann, Lars Røeboe; Jones, Neil; Simonsen, Jakob Grue

    2010-01-01

    , by programs reminiscent of low-level computer machine code; and at the same time biologically plausible: its functioning is defined by a single and relatively small set of chemical-like reaction rules. Further properties: the model is stored-program: programs are the same as data, so programs are not only......Our goal is to provide a top-down approach to biomolecular computation. In spite of widespread discussion about connections between biology and computation, one question seems notable by its absence: Where are the programs? We introduce a model of computation that is evidently programmable...... executable, but are also compilable and interpretable. It is universal: all computable functions can be computed (in natural ways and without arcane encodings of data and algorithm); it is also uniform: new “hardware” is not needed to solve new problems; and (last but not least) it is Turing complete...

  14. Biomolecular logic systems: applications to biosensors and bioactuators

    Science.gov (United States)

    Katz, Evgeny

    2014-05-01

    The paper presents an overview of recent advances in biosensors and bioactuators based on the biocomputing concept. Novel biosensors digitally process multiple biochemical signals through Boolean logic networks of coupled biomolecular reactions and produce output in the form of YES/NO response. Compared to traditional single-analyte sensing devices, biocomputing approach enables a high-fidelity multi-analyte biosensing, particularly beneficial for biomedical applications. Multi-signal digital biosensors thus promise advances in rapid diagnosis and treatment of diseases by processing complex patterns of physiological biomarkers. Specifically, they can provide timely detection and alert to medical emergencies, along with an immediate therapeutic intervention. Application of the biocomputing concept has been successfully demonstrated for systems performing logic analysis of biomarkers corresponding to different injuries, particularly exemplified for liver injury. Wide-ranging applications of multi-analyte digital biosensors in medicine, environmental monitoring and homeland security are anticipated. "Smart" bioactuators, for example for signal-triggered drug release, were designed by interfacing switchable electrodes and biocomputing systems. Integration of novel biosensing and bioactuating systems with the biomolecular information processing systems keeps promise for further scientific advances and numerous practical applications.

  15. Role of biomolecular logic systems in biosensors and bioactuators

    Science.gov (United States)

    Mailloux, Shay; Katz, Evgeny

    2014-09-01

    An overview of recent advances in biosensors and bioactuators based on biocomputing systems is presented. Biosensors digitally process multiple biochemical signals through Boolean logic networks of coupled biomolecular reactions and produce an output in the form of a YES/NO response. Compared to traditional single-analyte sensing devices, the biocomputing approach enables high-fidelity multianalyte biosensing, which is particularly beneficial for biomedical applications. Multisignal digital biosensors thus promise advances in rapid diagnosis and treatment of diseases by processing complex patterns of physiological biomarkers. Specifically, they can provide timely detection and alert medical personnel of medical emergencies together with immediate therapeutic intervention. Application of the biocomputing concept has been successfully demonstrated for systems performing logic analysis of biomarkers corresponding to different injuries, particularly as exemplified for liver injury. Wide-ranging applications of multianalyte digital biosensors in medicine, environmental monitoring, and homeland security are anticipated. "Smart" bioactuators, for signal-triggered drug release, for example, were designed by interfacing switchable electrodes with biocomputing systems. Integration of biosensing and bioactuating systems with biomolecular information processing systems advances the potential for further scientific innovations and various practical applications.

  16. Simulation of Biomolecular Nanomechanical Systems

    Science.gov (United States)

    2006-10-01

    Dynamics of Surface Immobilized DNA”, J. Chem. Phys., Vol. 120, pp 4958-4968 (2004). 9. J. C. Stachowiak , M. Yue, K. Castelino, N. Lacevic, A. Chakraborty...J. C. Stachowiak , A. Majumdar, “Cantilever arrays for multiplexed mechanical analysis of biomolecular reactions,” Molecular and Cellular Biomechanics...290-299 (2004). 4. M. Yue, J. C. Stachowiak , A. Majumdar, “Cantilever arrays for multiplexed mechanical analysis of biomolecular reactions

  17. Industrial Information Processing

    DEFF Research Database (Denmark)

    Svensson, Carsten

    2002-01-01

    This paper demonstrates, how cross-functional business processes may be aligned with product specification systems in an intra-organizational environment by integrating planning systems and expert systems, thereby providing an end-to-end integrated and an automated solution to the “build-to-order......This paper demonstrates, how cross-functional business processes may be aligned with product specification systems in an intra-organizational environment by integrating planning systems and expert systems, thereby providing an end-to-end integrated and an automated solution to the “build...

  18. NMRbox: A Resource for Biomolecular NMR Computation.

    Science.gov (United States)

    Maciejewski, Mark W; Schuyler, Adam D; Gryk, Michael R; Moraru, Ion I; Romero, Pedro R; Ulrich, Eldon L; Eghbalnia, Hamid R; Livny, Miron; Delaglio, Frank; Hoch, Jeffrey C

    2017-04-25

    Advances in computation have been enabling many recent advances in biomolecular applications of NMR. Due to the wide diversity of applications of NMR, the number and variety of software packages for processing and analyzing NMR data is quite large, with labs relying on dozens, if not hundreds of software packages. Discovery, acquisition, installation, and maintenance of all these packages is a burdensome task. Because the majority of software packages originate in academic labs, persistence of the software is compromised when developers graduate, funding ceases, or investigators turn to other projects. To simplify access to and use of biomolecular NMR software, foster persistence, and enhance reproducibility of computational workflows, we have developed NMRbox, a shared resource for NMR software and computation. NMRbox employs virtualization to provide a comprehensive software environment preconfigured with hundreds of software packages, available as a downloadable virtual machine or as a Platform-as-a-Service supported by a dedicated compute cloud. Ongoing development includes a metadata harvester to regularize, annotate, and preserve workflows and facilitate and enhance data depositions to BioMagResBank, and tools for Bayesian inference to enhance the robustness and extensibility of computational analyses. In addition to facilitating use and preservation of the rich and dynamic software environment for biomolecular NMR, NMRbox fosters the development and deployment of a new class of metasoftware packages. NMRbox is freely available to not-for-profit users. Copyright © 2017 Biophysical Society. All rights reserved.

  19. Risk and information processing

    International Nuclear Information System (INIS)

    Rasmussen, J.

    1985-08-01

    The reasons for the current widespread arguments between designers of advanced technological systems like, for instance, nuclear power plants and opponents from the general public concerning levels of acceptable risk may be found in incompatible definitions of risk, in differences in risk perception and criteria for acceptance, etc. Of importance may, however, also be the difficulties met in presenting the basis for risk analysis, such as the conceptual system models applied, in an explicit and credible form. Application of modern information technology for the design of control systems and human-machine interfaces together with the trends towards large centralised industrial installations have made it increasingly difficult to establish an acceptable model framework, in particular considering the role of human errors in major system failures and accidents. Different aspects of this problem are discussed in the paper, and areas are identified where research is needed in order to improve not only the safety of advanced systems, but also the basis for their acceptance by the general public. (author)

  20. Dynamics of biomolecular fibers

    Science.gov (United States)

    Plewa, Joseph Steven

    We describe theoretical and experimental investigations of biomolecular dynamics. First we demonstrate a lattice Monte Carlo simulation which conserves a topological linking number by forbidding moves through cis conformations. Unlike previous models that conserve linking number, our simulated ring chains have flexibility and the scaling properties of a lattice self-avoiding walk. A linking number of order 0.2 per bond leads to an eight-percent reduction of the radius for 128-bond chains. For ring chains evolving without the conservation of linking number, we demonstrate a substantial anti-correlation between the twist and writhe variables whose sum yields the linking number. We raise the possibility that our observed anti-correlations may have counterparts in biomolecules like DNA. We then discuss experiments which combine digital video microscopy and total-internal reflection microscopy (TIRM) in a single technique (3DTIRM) which allows accurate measurement of the three-dimensional location of microscopic particles. We compare two methods for measuring the total scattered light intensity. The first method uses an external photodiode as in conventional TIRM, the second uses only digitized video frames. We employ 3DTIRM to study the material properties of yeast amyloid fibers, consisting of aggregates of Sup35 protein. We attach one end of a biotin-labelled fiber to a glass slide and the other end to a streptavidin-coated 4.4 mum polystyrene sphere. By studying the equilibrium fluctuations of the colloidal sphere, we determine the elastic modulus of the fibers, and set limits on the twisting persistence length.

  1. BRICS and Quantum Information Processing

    DEFF Research Database (Denmark)

    Schmidt, Erik Meineche

    1998-01-01

    BRICS is a research centre and international PhD school in theoretical computer science, based at the University of Aarhus, Denmark. The centre has recently become engaged in quantum information processing in cooperation with the Department of Physics, also University of Aarhus. This extended...... abstract surveys activities at BRICS with special emphasis on the activities in quantum information processing....

  2. Information management in process planning

    NARCIS (Netherlands)

    Lutters, Diederick; Wijnker, T.C.; Kals, H.J.J.

    1999-01-01

    A recently proposed reference model indicates the use of structured information as the basis for the control of design and manufacturing processes. The model is used as a basis to describe the integration of design and process planning. A differentiation is made between macro- and micro process

  3. Information processing, computation, and cognition.

    Science.gov (United States)

    Piccinini, Gualtiero; Scarantino, Andrea

    2011-01-01

    Computation and information processing are among the most fundamental notions in cognitive science. They are also among the most imprecisely discussed. Many cognitive scientists take it for granted that cognition involves computation, information processing, or both - although others disagree vehemently. Yet different cognitive scientists use 'computation' and 'information processing' to mean different things, sometimes without realizing that they do. In addition, computation and information processing are surrounded by several myths; first and foremost, that they are the same thing. In this paper, we address this unsatisfactory state of affairs by presenting a general and theory-neutral account of computation and information processing. We also apply our framework by analyzing the relations between computation and information processing on one hand and classicism, connectionism, and computational neuroscience on the other. We defend the relevance to cognitive science of both computation, at least in a generic sense, and information processing, in three important senses of the term. Our account advances several foundational debates in cognitive science by untangling some of their conceptual knots in a theory-neutral way. By leveling the playing field, we pave the way for the future resolution of the debates' empirical aspects.

  4. Grid computing and biomolecular simulation.

    Science.gov (United States)

    Woods, Christopher J; Ng, Muan Hong; Johnston, Steven; Murdock, Stuart E; Wu, Bing; Tai, Kaihsu; Fangohr, Hans; Jeffreys, Paul; Cox, Simon; Frey, Jeremy G; Sansom, Mark S P; Essex, Jonathan W

    2005-08-15

    Biomolecular computer simulations are now widely used not only in an academic setting to understand the fundamental role of molecular dynamics on biological function, but also in the industrial context to assist in drug design. In this paper, two applications of Grid computing to this area will be outlined. The first, involving the coupling of distributed computing resources to dedicated Beowulf clusters, is targeted at simulating protein conformational change using the Replica Exchange methodology. In the second, the rationale and design of a database of biomolecular simulation trajectories is described. Both applications illustrate the increasingly important role modern computational methods are playing in the life sciences.

  5. Proprioceptive information processing in schizophrenia

    DEFF Research Database (Denmark)

    Arnfred, Sidse M H

    Rado (1890-1972) suggested that one of two un-reducible deficits in schizophrenia was a disorder of proprioception. Exploration of proprioceptive information processing is possible through the measurement of evoked and event related potentials. Event related EEG can be analyzed as conventional time...... of the left somatosensory cortex and it was suggested to be in accordance with two theories of schizophrenic information processing: the theory of deficiency of corollary discharge and the theory of weakening of the influence of past regularities. No gating deficiency was observed and the imprecision...... and amplitude attenuation was not a general phenomenon across the entire brain response. Summing up, in support of Rado's hypothesis, schizophrenia spectrum patients demonstrated abnormalities in proprioceptive information processing. Future work needs to extend the findings in larger un-medicated, non...

  6. Improvements in continuum modeling for biomolecular systems

    Science.gov (United States)

    Yu, Qiao; Ben-Zhuo, Lu

    2016-01-01

    Modeling of biomolecular systems plays an essential role in understanding biological processes, such as ionic flow across channels, protein modification or interaction, and cell signaling. The continuum model described by the Poisson- Boltzmann (PB)/Poisson-Nernst-Planck (PNP) equations has made great contributions towards simulation of these processes. However, the model has shortcomings in its commonly used form and cannot capture (or cannot accurately capture) some important physical properties of the biological systems. Considerable efforts have been made to improve the continuum model to account for discrete particle interactions and to make progress in numerical methods to provide accurate and efficient simulations. This review will summarize recent main improvements in continuum modeling for biomolecular systems, with focus on the size-modified models, the coupling of the classical density functional theory and the PNP equations, the coupling of polar and nonpolar interactions, and numerical progress. Project supported by the National Natural Science Foundation of China (Grant No. 91230106) and the Chinese Academy of Sciences Program for Cross & Cooperative Team of the Science & Technology Innovation.

  7. Information processing in medical imaging

    International Nuclear Information System (INIS)

    Bacharach, S.L.

    1986-01-01

    The Information Processing in Medical Imaging Conference is a biennial conference, held alternately in Europe and in the United States of America. The subject of the conference is the use of computers and mathematics in medical imaging, the evaluation of new imaging techniques, image processing, image analysis, diagnostic decision-making and related fields. This volume contains analyses of in vivo digital images from nuclear medicine, ultrasound, magnetic resonance, computerized tomography, digital radiography, etc. The conference brings together expert researchers in the field and the proceedings represent the leading biennial update of developments in the field of medical image processing. (Auth.)

  8. Quantum Information Processing by NMR

    Indian Academy of Sciences (India)

    Keywords. NMR; quantum information processing; quantum computing; qubits; pseudopure states; quantum; pseudopure states; quantum gates; quantum simulations; decoherence. ... T S Mahesh1. Department of Physics and NMR Research Center, Indian Institute of Science Education and Research, Pune 411 008, India ...

  9. From dynamics to structure and function of model biomolecular systems

    NARCIS (Netherlands)

    Fontaine-Vive-Curtaz, F.

    2007-01-01

    The purpose of this thesis was to extend recent works on structure and dynamics of hydrogen bonded crystals to model biomolecular systems and biological processes. The tools that we have used are neutron scattering (NS) and density functional theory (DFT) and force field (FF) based simulation

  10. Fidelity in Archaeal Information Processing

    Directory of Open Access Journals (Sweden)

    Bart de Koning

    2010-01-01

    Full Text Available A key element during the flow of genetic information in living systems is fidelity. The accuracy of DNA replication influences the genome size as well as the rate of genome evolution. The large amount of energy invested in gene expression implies that fidelity plays a major role in fitness. On the other hand, an increase in fidelity generally coincides with a decrease in velocity. Hence, an important determinant of the evolution of life has been the establishment of a delicate balance between fidelity and variability. This paper reviews the current knowledge on quality control in archaeal information processing. While the majority of these processes are homologous in Archaea, Bacteria, and Eukaryotes, examples are provided of nonorthologous factors and processes operating in the archaeal domain. In some instances, evidence for the existence of certain fidelity mechanisms has been provided, but the factors involved still remain to be identified.

  11. Models of memory: information processing.

    Science.gov (United States)

    Eysenck, M W

    1988-01-01

    A complete understanding of human memory will necessarily involve consideration of the active processes involved at the time of learning and of the organization and nature of representation of information in long-term memory. In addition to process and structure, it is important for theory to indicate the ways in which stimulus-driven and conceptually driven processes interact with each other in the learning situation. Not surprisingly, no existent theory provides a detailed specification of all of these factors. However, there are a number of more specific theories which are successful in illuminating some of the component structures and processes. The working memory model proposed by Baddeley and Hitch (1974) and modified subsequently has shown how the earlier theoretical construct of the short-term store should be replaced with the notion of working memory. In essence, working memory is a system which is used both to process information and to permit the transient storage of information. It comprises a number of conceptually distinct, but functionally interdependent components. So far as long-term memory is concerned, there is evidence of a number of different kinds of representation. Of particular importance is the distinction between declarative knowledge and procedural knowledge, a distinction which has received support from the study of amnesic patients. Kosslyn has argued for a distinction between literal representation and propositional representation, whereas Tulving has distinguished between episodic and semantic memories. While Tulving's distinction is perhaps the best known, there is increasing evidence that episodic and semantic memory differ primarily in content rather than in process, and so the distinction may be of less theoretical value than was originally believed.(ABSTRACT TRUNCATED AT 250 WORDS)

  12. Efficiency of cellular information processing

    International Nuclear Information System (INIS)

    Barato, Andre C; Hartich, David; Seifert, Udo

    2014-01-01

    We show that a rate of conditional Shannon entropy reduction, characterizing the learning of an internal process about an external process, is bounded by the thermodynamic entropy production. This approach allows for the definition of an informational efficiency that can be used to study cellular information processing. We analyze three models of increasing complexity inspired by the Escherichia coli sensory network, where the external process is an external ligand concentration jumping between two values. We start with a simple model for which ATP must be consumed so that a protein inside the cell can learn about the external concentration. With a second model for a single receptor we show that the rate at which the receptor learns about the external environment can be nonzero even without any dissipation inside the cell since chemical work done by the external process compensates for this learning rate. The third model is more complete, also containing adaptation. For this model we show inter alia that a bacterium in an environment that changes at a very slow time-scale is quite inefficient, dissipating much more than it learns. Using the concept of a coarse-grained learning rate, we show for the model with adaptation that while the activity learns about the external signal the option of changing the methylation level increases the concentration range for which the learning rate is substantial. (paper)

  13. Information processing. [in human performance

    Science.gov (United States)

    Wickens, Christopher D.; Flach, John M.

    1988-01-01

    Theoretical models of sensory-information processing by the human brain are reviewed from a human-factors perspective, with a focus on their implications for aircraft and avionics design. The topics addressed include perception (signal detection and selection), linguistic factors in perception (context provision, logical reversals, absence of cues, and order reversals), mental models, and working and long-term memory. Particular attention is given to decision-making problems such as situation assessment, decision formulation, decision quality, selection of action, the speed-accuracy tradeoff, stimulus-response compatibility, stimulus sequencing, dual-task performance, task difficulty and structure, and factors affecting multiple task performance (processing modalities, codes, and stages).

  14. Principles of neural information processing

    CERN Document Server

    Seelen, Werner v

    2016-01-01

    In this fundamental book the authors devise a framework that describes the working of the brain as a whole. It presents a comprehensive introduction to the principles of Neural Information Processing as well as recent and authoritative research. The books´ guiding principles are the main purpose of neural activity, namely, to organize behavior to ensure survival, as well as the understanding of the evolutionary genesis of the brain. Among the developed principles and strategies belong self-organization of neural systems, flexibility, the active interpretation of the world by means of construction and prediction as well as their embedding into the world, all of which form the framework of the presented description. Since, in brains, their partial self-organization, the lifelong adaptation and their use of various methods of processing incoming information are all interconnected, the authors have chosen not only neurobiology and evolution theory as a basis for the elaboration of such a framework, but also syst...

  15. Biomolecular Architectures Molecular Biology

    Science.gov (United States)

    2013-08-31

    Growth on agar media had proven easier to sample and process for Rhodotorula and was thus used for Bacillus samples. Publications Zhang, W., E. R...plant tissue, which demonstrates use in monitoring for bacterial pathogens in foods and crops . (a) Papers published in peer-reviewed journals (N/A for...nanoparticles: Sensing pathogens and toxins in foods and crops , Trends in Food Science & Technology, (07 2012): 0. doi: 10.1016/j.tifs.2012.06.013

  16. Quantum communication and information processing

    Science.gov (United States)

    Beals, Travis Roland

    Quantum computers enable dramatically more efficient algorithms for solving certain classes of computational problems, but, in doing so, they create new problems. In particular, Shor's Algorithm allows for efficient cryptanalysis of many public-key cryptosystems. As public key cryptography is a critical component of present-day electronic commerce, it is crucial that a working, secure replacement be found. Quantum key distribution (QKD), first developed by C.H. Bennett and G. Brassard, offers a partial solution, but many challenges remain, both in terms of hardware limitations and in designing cryptographic protocols for a viable large-scale quantum communication infrastructure. In Part I, I investigate optical lattice-based approaches to quantum information processing. I look at details of a proposal for an optical lattice-based quantum computer, which could potentially be used for both quantum communications and for more sophisticated quantum information processing. In Part III, I propose a method for converting and storing photonic quantum bits in the internal state of periodically-spaced neutral atoms by generating and manipulating a photonic band gap and associated defect states. In Part II, I present a cryptographic protocol which allows for the extension of present-day QKD networks over much longer distances without the development of new hardware. I also present a second, related protocol which effectively solves the authentication problem faced by a large QKD network, thus making QKD a viable, information-theoretic secure replacement for public key cryptosystems.

  17. Biomolecular Markers in Cancer of the Tongue

    Directory of Open Access Journals (Sweden)

    Daris Ferrari

    2009-01-01

    Full Text Available The incidence of tongue cancer is increasing worldwide, and its aggressiveness remains high regardless of treatment. Genetic changes and the expression of abnormal proteins have been frequently reported in the case of head and neck cancers, but the little information that has been published concerning tongue tumours is often contradictory. This review will concentrate on the immunohistochemical expression of biomolecular markers and their relationships with clinical behaviour and prognosis. Most of these proteins are associated with nodal stage, tumour progression and metastases, but there is still controversy concerning their impact on disease-free and overall survival, and treatment response. More extensive clinical studies are needed to identify the patterns of molecular alterations and the most reliable predictors in order to develop tailored anti-tumour strategies based on the targeting of hypoxia markers, vascular and lymphangiogenic factors, epidermal growth factor receptors, intracytoplasmatic signalling and apoptosis.

  18. Proprioceptive information processing in schizophrenia

    DEFF Research Database (Denmark)

    Arnfred, Sidse M H

    This doctoral thesis focuses on brain activity in response to proprioceptive stimulation in schizophrenia. The works encompass methodological developments substantiated by investigations of healthy volunteers and two clinical studies of schizophrenia spectrum patients. American psychiatrist Sandor...... Rado (1890-1972) suggested that one of two un-reducible deficits in schizophrenia was a disorder of proprioception. Exploration of proprioceptive information processing is possible through the measurement of evoked and event related potentials. Event related EEG can be analyzed as conventional time......-series averages or as oscillatory averages transformed into the frequency domain. Gamma activity evoked by electricity or by another type of somatosensory stimulus has not been reported before in schizophrenia. Gamma activity is considered to be a manifestation of perceptual integration. A new load stimulus...

  19. Information systems process and practice

    CERN Document Server

    Urquhart, Christine; Tbaishat, Dina; Yeoman, Alison

    2017-01-01

    This book adopts a holistic interpretation of information architecture, to offer a variety of methods, tools, and techniques that may be used when designing websites and information systems that support workflows and what people require when 'managing information'.

  20. Real-time optical information processing

    CERN Document Server

    Javidi, Bahram

    1994-01-01

    Real-Time Optical Information Processing covers the most recent developments in optical information processing, pattern recognition, neural computing, and materials for devices in optical computing. Intended for researchers and graduate students in signal and information processing with some elementary background in optics, the book provides both theoretical and practical information on the latest in information processing in all its aspects. Leading researchers in the field describe the significant signal processing algorithms architectures in optics as well as basic hardware concepts,

  1. Process improvement and information management.

    Science.gov (United States)

    Hindle, J

    1997-01-01

    Notes the importance of continuous improvement as a concept to guide management and that this concept requires numerous components to make it work. Picks out the role of information management as a key area, citing factors such as the creation of an "information culture" as being of major importance. Looks at the path followed by some Trusts in pursuit of this "information culture" wherein staff gained an improved insight into the use of information as a management tool.

  2. Handbook on neural information processing

    CERN Document Server

    Maggini, Marco; Jain, Lakhmi

    2013-01-01

    This handbook presents some of the most recent topics in neural information processing, covering both theoretical concepts and practical applications. The contributions include:                         Deep architectures                         Recurrent, recursive, and graph neural networks                         Cellular neural networks                         Bayesian networks                         Approximation capabilities of neural networks                         Semi-supervised learning                         Statistical relational learning                         Kernel methods for structured data                         Multiple classifier systems                         Self organisation and modal learning                         Applications to ...

  3. Accuracy in Optical Information Processing

    Science.gov (United States)

    Timucin, Dogan Aslan

    Low computational accuracy is an important obstacle for optical processors which blocks their way to becoming a practical reality and a serious challenger for classical computing paradigms. This research presents a comprehensive solution approach to the problem of accuracy enhancement in discrete analog optical information processing systems. Statistical analysis of a generic three-plane optical processor is carried out first, taking into account the effects of diffraction, interchannel crosstalk, and background radiation. Noise sources included in the analysis are photon, excitation, and emission fluctuations in the source array, transmission and polarization fluctuations in the modulator, and photoelectron, gain, dark, shot, and thermal noise in the detector array. Means and mutual coherence and probability density functions are derived for both optical and electrical output signals. Next, statistical models for a number of popular optoelectronic devices are studied. Specific devices considered here are light-emitting and laser diode sources, an ideal noiseless modulator and a Gaussian random-amplitude-transmittance modulator, p-i-n and avalanche photodiode detectors followed by electronic postprocessing, and ideal free-space geometrical -optics propagation and single-lens imaging systems. Output signal statistics are determined for various interesting device combinations by inserting these models into the general formalism. Finally, based on these special-case output statistics, results on accuracy limitations and enhancement in optical processors are presented. Here, starting with the formulation of the accuracy enhancement problem as (1) an optimal detection problem and (2) as a parameter estimation problem, the potential accuracy improvements achievable via the classical multiple-hypothesis -testing and maximum likelihood and Bayesian parameter estimation methods are demonstrated. Merits of using proper normalizing transforms which can potentially stabilize

  4. Infochemistry Information Processing at the Nanoscale

    CERN Document Server

    Szacilowski, Konrad

    2012-01-01

    Infochemistry: Information Processing at the Nanoscale, defines a new field of science, and describes the processes, systems and devices at the interface between chemistry and information sciences. The book is devoted to the application of molecular species and nanostructures to advanced information processing. It includes the design and synthesis of suitable materials and nanostructures, their characterization, and finally applications of molecular species and nanostructures for information storage and processing purposes. Divided into twelve chapters; the first three chapters serve as an int

  5. Social Information Processing in Deaf Adolescents

    Science.gov (United States)

    Torres, Jesús; Saldaña, David; Rodríguez-Ortiz, Isabel R.

    2016-01-01

    The goal of this study was to compare the processing of social information in deaf and hearing adolescents. A task was developed to assess social information processing (SIP) skills of deaf adolescents based on Crick and Dodge's (1994; A review and reformulation of social information-processing mechanisms in children's social adjustment.…

  6. Information processing by neuronal populations

    National Research Council Canada - National Science Library

    Hölscher, Christian; Munk, Matthias

    2009-01-01

    ... simultaneously recorded spike trains 120 Mark Laubach, Nandakumar S. Narayanan, and Eyal Y. Kimchi Part III Neuronal population information coding and plasticity in specific brain areas 149 7 F...

  7. Multidimensional persistence in biomolecular data.

    Science.gov (United States)

    Xia, Kelin; Wei, Guo-Wei

    2015-07-30

    Persistent homology has emerged as a popular technique for the topological simplification of big data, including biomolecular data. Multidimensional persistence bears considerable promise to bridge the gap between geometry and topology. However, its practical and robust construction has been a challenge. We introduce two families of multidimensional persistence, namely pseudomultidimensional persistence and multiscale multidimensional persistence. The former is generated via the repeated applications of persistent homology filtration to high-dimensional data, such as results from molecular dynamics or partial differential equations. The latter is constructed via isotropic and anisotropic scales that create new simiplicial complexes and associated topological spaces. The utility, robustness, and efficiency of the proposed topological methods are demonstrated via protein folding, protein flexibility analysis, the topological denoising of cryoelectron microscopy data, and the scale dependence of nanoparticles. Topological transition between partial folded and unfolded proteins has been observed in multidimensional persistence. The separation between noise topological signatures and molecular topological fingerprints is achieved by the Laplace-Beltrami flow. The multiscale multidimensional persistent homology reveals relative local features in Betti-0 invariants and the relatively global characteristics of Betti-1 and Betti-2 invariants. © 2015 Wiley Periodicals, Inc.

  8. Multiscale Persistent Functions for Biomolecular Structure Characterization

    Energy Technology Data Exchange (ETDEWEB)

    Xia, Kelin [Nanyang Technological University (Singapore). Division of Mathematical Sciences, School of Physical, Mathematical Sciences and School of Biological Sciences; Li, Zhiming [Central China Normal University, Wuhan (China). Key Laboratory of Quark and Lepton Physics (MOE) and Institute of Particle Physics; Mu, Lin [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States). Computer Science and Mathematics Division

    2017-11-02

    Here in this paper, we introduce multiscale persistent functions for biomolecular structure characterization. The essential idea is to combine our multiscale rigidity functions (MRFs) with persistent homology analysis, so as to construct a series of multiscale persistent functions, particularly multiscale persistent entropies, for structure characterization. To clarify the fundamental idea of our method, the multiscale persistent entropy (MPE) model is discussed in great detail. Mathematically, unlike the previous persistent entropy (Chintakunta et al. in Pattern Recognit 48(2):391–401, 2015; Merelli et al. in Entropy 17(10):6872–6892, 2015; Rucco et al. in: Proceedings of ECCS 2014, Springer, pp 117–128, 2016), a special resolution parameter is incorporated into our model. Various scales can be achieved by tuning its value. Physically, our MPE can be used in conformational entropy evaluation. More specifically, it is found that our method incorporates in it a natural classification scheme. This is achieved through a density filtration of an MRF built from angular distributions. To further validate our model, a systematical comparison with the traditional entropy evaluation model is done. Additionally, it is found that our model is able to preserve the intrinsic topological features of biomolecular data much better than traditional approaches, particularly for resolutions in the intermediate range. Moreover, by comparing with traditional entropies from various grid sizes, bond angle-based methods and a persistent homology-based support vector machine method (Cang et al. in Mol Based Math Biol 3:140–162, 2015), we find that our MPE method gives the best results in terms of average true positive rate in a classic protein structure classification test. More interestingly, all-alpha and all-beta protein classes can be clearly separated from each other with zero error only in our model. Finally, a special protein structure index (PSI) is proposed, for the first

  9. Scaling the Information Processing Demands of Occupations

    Science.gov (United States)

    Haase, Richard F.; Jome, LaRae M.; Ferreira, Joaquim Armando; Santos, Eduardo J. R.; Connacher, Christopher C.; Sendrowitz, Kerrin

    2011-01-01

    The purpose of this study was to provide additional validity evidence for a model of person-environment fit based on polychronicity, stimulus load, and information processing capacities. In this line of research the confluence of polychronicity and information processing (e.g., the ability of individuals to process stimuli from the environment…

  10. Mathematics of Information Processing and the Internet

    Science.gov (United States)

    Hart, Eric W.

    2010-01-01

    The mathematics of information processing and the Internet can be organized around four fundamental themes: (1) access (finding information easily); (2) security (keeping information confidential); (3) accuracy (ensuring accurate information); and (4) efficiency (data compression). In this article, the author discusses each theme with reference to…

  11. Coordination and control inside simple biomolecular machines.

    Science.gov (United States)

    Yu, Jin

    2014-01-01

    Biomolecular machines can achieve physiological functions precisely and efficiently, though they always operate under fluctuations and noises. We review two types of simple machinery that we have recently studied. The machinery can be regarded as molecular motors. They transform chemical free energy from NTP hydrolysis to mechanical work. One type belongs to small monomeric helicases that move directionally along single-stranded nucleic acid, and may further unwind the duplex part for gene replication or repair. The other type belongs to ring-shaped NTPase motors that also move or transport nucleic acid or protein substrate in a directional manner, such as for genome packaging or protein degradation. The central issue in this review is on how the machinery coordinates essential degrees of freedom during the mechanochemical coupling process. Further concerns include how the coordination and control are manifested in experiments, and how they can be captured well in modeling and computational research. We employed atomistic molecular dynamics simulations, coarse-grained analyses, and stochastic modeling techniques to examine the molecular machines at multiple resolutions and timescales. Detailed descriptions on how the protein interacts with its substrate at interface, as well as how multiple protein subunits are coordinated are summarized.

  12. Information literacy and knowledge organization in information management process

    Directory of Open Access Journals (Sweden)

    Selma Leticia Capinzaiki Ottonicar

    2017-07-01

    Full Text Available In the current context of information production and access, organizations need to be able to handle the information they obtain, whether digital or analog. Therefore, there is a process known as information management, responsible for the collection, processing, storage and dissemination. It is argued that the steps of this management can be guided by informational competence and the organization of knowledge. Therefore, the following questions are raised: what is the importance of information competence and knowledge organization in information management? How do knowledge organization techniques and information competence contribute to information management? The objective is to reflect on the importance of informational competence and knowledge management for the development of intelligent information management, which meets the needs of contemporary organizations. This work is justified by interrelating the topics knowledge organization, information management and informational competence and its contribution to organizations, characterizing itself as an interdisciplinary theme. The discussions present the interrelationship between knowledge organization, informational competence and knowledge organization, in order to improve organizational processes. As final considerations, it is argued that the three proposed themes contribute to the application and improvement of information management, so that individuals construct knowledge.

  13. Quantum information processing : science & technology.

    Energy Technology Data Exchange (ETDEWEB)

    Horton, Rebecca; Carroll, Malcolm S.; Tarman, Thomas David

    2010-09-01

    Qubits demonstrated using GaAs double quantum dots (DQD). The qubit basis states are the (1) singlet and (2) triplet stationary states. Long spin decoherence times in silicon spurs translation of GaAs qubit in to silicon. In the near term the goals are: (1) Develop surface gate enhancement mode double quantum dots (MOS & strained-Si/SiGe) to demonstrate few electrons and spin read-out and to examine impurity doped quantum-dots as an alternative architecture; (2) Use mobility, C-V, ESR, quantum dot performance & modeling to feedback and improve upon processing, this includes development of atomic precision fabrication at SNL; (3) Examine integrated electronics approaches to RF-SET; (4) Use combinations of numerical packages for multi-scale simulation of quantum dot systems (NEMO3D, EMT, TCAD, SPICE); and (5) Continue micro-architecture evaluation for different device and transport architectures.

  14. Computational Approach for Quantifying Structural Disorder in Biomolecular Lattices

    Science.gov (United States)

    Bratton, Clayton; Reiser, Karen; Knoesen, Andre; Yankelevich, Diego; Wang, Mingshi; Rocha-Mendoza, Israel

    2009-11-01

    We have developed a novel computational approach for quantifying structural disorder in biomolecular lattices with nonlinear susceptibility based on analysis of polarization-modulated second harmonic signal. Transient, regional disorder at the level of molecular organization is identified using a novel signal-processing algorithms sufficiently compact for near real-time analysis with a desktop computer. Global disorder and regional disorder within the biostructure are assessed and scored using a multiple methodologies. Experimental results suggest our signal processing method represents a robust, scalable tool that allows us to detect both regional and global alterations in signal characteristics of biostructures with a high degree of discrimination.

  15. Developments in quantum information processing by nuclear ...

    Indian Academy of Sciences (India)

    Permanent link: http://www.ias.ac.in/article/fulltext/pram/059/02/0243-0254. Keywords. Quantum information processing; qubit; nuclear magnetic resonance quantum computing. Abstract. Use of dipolar and quadrupolar couplings for quantum information processing (QIP) by nuclear magnetic resonance (NMR) is described.

  16. Continuous-variable quantum information processing

    DEFF Research Database (Denmark)

    Andersen, Ulrik Lund; Leuchs, G.; Silberhorn, C.

    2010-01-01

    Observables of quantum systems can possess either a discrete or a continuous spectrum. For example, upon measurements of the photon number of a light state, discrete outcomes will result whereas measurements of the light's quadrature amplitudes result in continuous outcomes. If one uses...... the continuous degree of freedom of a quantum system for encoding, processing or detecting information, one enters the field of continuous-variable (CV) quantum information processing. In this paper we review the basic principles of CV quantum information processing with main focus on recent developments...... in the field. We will be addressing the three main stages of a quantum information system; the preparation stage where quantum information is encoded into CVs of coherent states and single-photon states, the processing stage where CV information is manipulated to carry out a specified protocol and a detection...

  17. Career information processing strategies of secondary school ...

    African Journals Online (AJOL)

    This study examined the strategies commonly adopted by Osun state secondary school students in processing career information. It specifically examined the sources of career information available to the students, the uses to which the students put the information collected and how their career decision making skills can be ...

  18. A language for information commerce processes

    NARCIS (Netherlands)

    Aberer, Karl; Wombacher, Andreas

    Automatizing information commerce requires languages to represent the typical information commerce processes. Existing languages and standards cover either only very specific types of business models or are too general to capture in a concise way the specific properties of information commerce

  19. XML-based approaches for the integration of heterogeneous bio-molecular data.

    Science.gov (United States)

    Mesiti, Marco; Jiménez-Ruiz, Ernesto; Sanz, Ismael; Berlanga-Llavori, Rafael; Perlasca, Paolo; Valentini, Giorgio; Manset, David

    2009-10-15

    The today's public database infrastructure spans a very large collection of heterogeneous biological data, opening new opportunities for molecular biology, bio-medical and bioinformatics research, but raising also new problems for their integration and computational processing. In this paper we survey the most interesting and novel approaches for the representation, integration and management of different kinds of biological data by exploiting XML and the related recommendations and approaches. Moreover, we present new and interesting cutting edge approaches for the appropriate management of heterogeneous biological data represented through XML. XML has succeeded in the integration of heterogeneous biomolecular information, and has established itself as the syntactic glue for biological data sources. Nevertheless, a large variety of XML-based data formats have been proposed, thus resulting in a difficult effective integration of bioinformatics data schemes. The adoption of a few semantic-rich standard formats is urgent to achieve a seamless integration of the current biological resources.

  20. Application of Hidden Markov Models in Biomolecular Simulations.

    Science.gov (United States)

    Shukla, Saurabh; Shamsi, Zahra; Moffett, Alexander S; Selvam, Balaji; Shukla, Diwakar

    2017-01-01

    Hidden Markov models (HMMs) provide a framework to analyze large trajectories of biomolecular simulation datasets. HMMs decompose the conformational space of a biological molecule into finite number of states that interconvert among each other with certain rates. HMMs simplify long timescale trajectories for human comprehension, and allow comparison of simulations with experimental data. In this chapter, we provide an overview of building HMMs for analyzing bimolecular simulation datasets. We demonstrate the procedure for building a Hidden Markov model for Met-enkephalin peptide simulation dataset and compare the timescales of the process.

  1. Biomolecular computers with multiple restriction enzymes

    Directory of Open Access Journals (Sweden)

    Sebastian Sakowski

    2017-10-01

    Full Text Available Abstract The development of conventional, silicon-based computers has several limitations, including some related to the Heisenberg uncertainty principle and the von Neumann “bottleneck”. Biomolecular computers based on DNA and proteins are largely free of these disadvantages and, along with quantum computers, are reasonable alternatives to their conventional counterparts in some applications. The idea of a DNA computer proposed by Ehud Shapiro’s group at the Weizmann Institute of Science was developed using one restriction enzyme as hardware and DNA fragments (the transition molecules as software and input/output signals. This computer represented a two-state two-symbol finite automaton that was subsequently extended by using two restriction enzymes. In this paper, we propose the idea of a multistate biomolecular computer with multiple commercially available restriction enzymes as hardware. Additionally, an algorithmic method for the construction of transition molecules in the DNA computer based on the use of multiple restriction enzymes is presented. We use this method to construct multistate, biomolecular, nondeterministic finite automata with four commercially available restriction enzymes as hardware. We also describe an experimental applicaton of this theoretical model to a biomolecular finite automaton made of four endonucleases.

  2. Biomolecular computers with multiple restriction enzymes

    Science.gov (United States)

    Sakowski, Sebastian; Krasinski, Tadeusz; Waldmajer, Jacek; Sarnik, Joanna; Blasiak, Janusz; Poplawski, Tomasz

    2017-01-01

    Abstract The development of conventional, silicon-based computers has several limitations, including some related to the Heisenberg uncertainty principle and the von Neumann “bottleneck”. Biomolecular computers based on DNA and proteins are largely free of these disadvantages and, along with quantum computers, are reasonable alternatives to their conventional counterparts in some applications. The idea of a DNA computer proposed by Ehud Shapiro’s group at the Weizmann Institute of Science was developed using one restriction enzyme as hardware and DNA fragments (the transition molecules) as software and input/output signals. This computer represented a two-state two-symbol finite automaton that was subsequently extended by using two restriction enzymes. In this paper, we propose the idea of a multistate biomolecular computer with multiple commercially available restriction enzymes as hardware. Additionally, an algorithmic method for the construction of transition molecules in the DNA computer based on the use of multiple restriction enzymes is presented. We use this method to construct multistate, biomolecular, nondeterministic finite automata with four commercially available restriction enzymes as hardware. We also describe an experimental applicaton of this theoretical model to a biomolecular finite automaton made of four endonucleases. PMID:29064510

  3. Conducting polymer based biomolecular electronic devices

    Indian Academy of Sciences (India)

    Conducting polymers such as polypyrroles, polythiophenes and polyanilines have been projected for applications for a wide range of biomolecular electronic devices such as optical, electronic, drug-delivery, memory and biosensing devices. Our group has been actively working towards the application of conducting ...

  4. Biomolecular computers with multiple restriction enzymes.

    Science.gov (United States)

    Sakowski, Sebastian; Krasinski, Tadeusz; Waldmajer, Jacek; Sarnik, Joanna; Blasiak, Janusz; Poplawski, Tomasz

    2017-01-01

    The development of conventional, silicon-based computers has several limitations, including some related to the Heisenberg uncertainty principle and the von Neumann "bottleneck". Biomolecular computers based on DNA and proteins are largely free of these disadvantages and, along with quantum computers, are reasonable alternatives to their conventional counterparts in some applications. The idea of a DNA computer proposed by Ehud Shapiro's group at the Weizmann Institute of Science was developed using one restriction enzyme as hardware and DNA fragments (the transition molecules) as software and input/output signals. This computer represented a two-state two-symbol finite automaton that was subsequently extended by using two restriction enzymes. In this paper, we propose the idea of a multistate biomolecular computer with multiple commercially available restriction enzymes as hardware. Additionally, an algorithmic method for the construction of transition molecules in the DNA computer based on the use of multiple restriction enzymes is presented. We use this method to construct multistate, biomolecular, nondeterministic finite automata with four commercially available restriction enzymes as hardware. We also describe an experimental applicaton of this theoretical model to a biomolecular finite automaton made of four endonucleases.

  5. Biomolecular engineering for nanobio/bionanotechnology

    Science.gov (United States)

    Nagamune, Teruyuki

    2017-04-01

    Biomolecular engineering can be used to purposefully manipulate biomolecules, such as peptides, proteins, nucleic acids and lipids, within the framework of the relations among their structures, functions and properties, as well as their applicability to such areas as developing novel biomaterials, biosensing, bioimaging, and clinical diagnostics and therapeutics. Nanotechnology can also be used to design and tune the sizes, shapes, properties and functionality of nanomaterials. As such, there are considerable overlaps between nanotechnology and biomolecular engineering, in that both are concerned with the structure and behavior of materials on the nanometer scale or smaller. Therefore, in combination with nanotechnology, biomolecular engineering is expected to open up new fields of nanobio/bionanotechnology and to contribute to the development of novel nanobiomaterials, nanobiodevices and nanobiosystems. This review highlights recent studies using engineered biological molecules (e.g., oligonucleotides, peptides, proteins, enzymes, polysaccharides, lipids, biological cofactors and ligands) combined with functional nanomaterials in nanobio/bionanotechnology applications, including therapeutics, diagnostics, biosensing, bioanalysis and biocatalysts. Furthermore, this review focuses on five areas of recent advances in biomolecular engineering: (a) nucleic acid engineering, (b) gene engineering, (c) protein engineering, (d) chemical and enzymatic conjugation technologies, and (e) linker engineering. Precisely engineered nanobiomaterials, nanobiodevices and nanobiosystems are anticipated to emerge as next-generation platforms for bioelectronics, biosensors, biocatalysts, molecular imaging modalities, biological actuators, and biomedical applications.

  6. Occurrence reporting and processing of operations information

    International Nuclear Information System (INIS)

    1997-01-01

    DOE O 232.1A, Occurrence Reporting and Processing of Operations Information, and 10 CFR 830.350, Occurrence Reporting and Processing of Operations Information (when it becomes effective), along with this manual, set forth occurrence reporting requirements for Department of Energy (DOE) Departmental Elements and contractors responsible for the management and operation of DOE-owned and -leased facilities. These requirements include categorization of occurrences related to safety, security, environment, health, or operations (''Reportable Occurrences''); DOE notification of these occurrences; and the development and submission of documented follow-up reports. This Manual provides detailed information for categorizing and reporting occurrences at DOE facilities. Information gathered by the Occurrence Reporting and processing System is used for analysis of the Department's performance in environmental protection, safeguards and security, and safety and health of its workers and the public. This information is also used to develop lessons learned and document events that significantly impact DOE operations

  7. Occurrence reporting and processing of operations information

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1997-07-21

    DOE O 232.1A, Occurrence Reporting and Processing of Operations Information, and 10 CFR 830.350, Occurrence Reporting and Processing of Operations Information (when it becomes effective), along with this manual, set forth occurrence reporting requirements for Department of Energy (DOE) Departmental Elements and contractors responsible for the management and operation of DOE-owned and -leased facilities. These requirements include categorization of occurrences related to safety, security, environment, health, or operations (``Reportable Occurrences``); DOE notification of these occurrences; and the development and submission of documented follow-up reports. This Manual provides detailed information for categorizing and reporting occurrences at DOE facilities. Information gathered by the Occurrence Reporting and processing System is used for analysis of the Department`s performance in environmental protection, safeguards and security, and safety and health of its workers and the public. This information is also used to develop lessons learned and document events that significantly impact DOE operations.

  8. Value Driven Information Processing and Fusion

    Science.gov (United States)

    2016-03-01

    including: optimal data reduction in a network setting for decentralized inference with quantization constraint; interactive fusion that allows queries and...Sep-2012 22-Oct-2015 Approved for Public Release; Distribution Unlimited Final Report: Value Driven Information Processing and Fusion The views...2015 ABSTRACT Final Report: Value Driven Information Processing and Fusion Report Title The objective of the project is to develop a general framework

  9. A process framework for information security management

    Directory of Open Access Journals (Sweden)

    Knut Haufe

    2016-01-01

    Full Text Available Securing sensitive organizational data has become increasingly vital to organizations. An Information Security Management System (ISMS is a systematic approach for establishing, implementing, operating, monitoring, reviewing, maintaining and improving an organization's information security. Key elements of the operation of an ISMS are ISMS processes. However, and in spite of its importance, an ISMS process framework with a description of ISMS processes and their interaction as well as the interaction with other management processes is not available in the literature. Cost benefit analysis of information security investments regarding single measures protecting information and ISMS processes are not in the focus of current research, mostly focused on economics. This article aims to fill this research gap by proposing such an ISMS process framework as the main contribution. Based on a set of agreed upon ISMS processes in existing standards like ISO 27000 series, COBIT and ITIL. Within the framework, identified processes are described and their interaction and interfaces are specified. This framework helps to focus on the operation of the ISMS, instead of focusing on measures and controls. By this, as a main finding, the systemic character of the ISMS consisting of processes and the perception of relevant roles of the ISMS is strengthened.

  10. The orienting response in information processing

    National Research Council Canada - National Science Library

    Sokolov, E. N

    2002-01-01

    ... Organization of Color Space 127 9. The Orienting Responseand Subjective Space I 141 10. The Orienting Responseand Subjective Space II 163vi CONTEiNTS 11. Orienting, Information, and Anticipation 189 12. Auditory Orienting Event-Related Response Potentials in the Study of the 241 13. Addendum: Processing Underlying Principles of Information 323 Glossar...

  11. Quantum information processing with atoms and photons

    International Nuclear Information System (INIS)

    Monroe, C.

    2003-01-01

    Quantum information processors exploit the quantum features of superposition and entanglement for applications not possible in classical devices, offering the potential for significant improvements in the communication and processing of information. Experimental realization of large-scale quantum information processors remains a long term vision, as the required nearly pure quantum behaviour is observed only in exotic hardware such as individual laser-cooled atoms and isolated photons. But recent theoretical and experimental advances suggest that cold atoms and individual photons may lead the way towards bigger and better quantum information processors, effectively building mesoscopic versions of Schroedinger's cat' from the bottom up. (author)

  12. Algorithmic information theory mathematics of digital information processing

    CERN Document Server

    Seibt, Peter

    2007-01-01

    Treats the Mathematics of many important areas in digital information processing. This book covers, in a unified presentation, five topics: Data Compression, Cryptography, Sampling (Signal Theory), Error Control Codes, Data Reduction. It is useful for teachers, students and practitioners in Electronic Engineering, Computer Science and Mathematics.

  13. Unraveling the biomolecular snapshots of mitosis in healthy and cancer cells using plasmonically-enhanced Raman spectroscopy.

    Science.gov (United States)

    Panikkanvalappil, Sajanlal R; Hira, Steven M; Mahmoud, Mahmoud A; El-Sayed, Mostafa A

    2014-11-12

    Owing to the dynamic and complex nature of mitosis, precise and timely executions of biomolecular events are critical for high fidelity cell division. In this context, visualization of such complex events at the molecular level can provide vital information on the biomolecular processes in abnormal cells. Here, we explored the plasmonically enhanced light scattering properties of functionalized gold nanocubes (AuNCs) together with surface-enhanced Raman spectroscopy (SERS) to unravel the complex and dynamic biological processes involved in mitosis of healthy and cancerous cells from its molecular perspectives. By monitoring various stages of mitosis using SERS, we noticed that relatively high rate of conversion of mitotic proteins from their α-helix structure to β-sheet conformation is likely in the cancer cells during meta-, ana-, and telophases. Unique biochemical modifications to the lipid and amino acid moieties, associated with the observed protein conformational modifications, were also identified. However, in healthy cells, the existence of proteins in their β conformation was momentary and was largely in the α-helix form. The role of abnormal conformational modifications of mitotic proteins on the development of anomalous mitotic activities was further confirmed by looking at plasmonic nanoparticle-induced cytokinesis failure in cancer cells. Our findings illustrate the vast possibilities of SERS in real-time tracking of complex, subtle, and momentary modifications of biomolecules in live cells, which could provide new insights to the role of protein conformation dynamics during mitosis on the development of cancer and many other diseases.

  14. Application of Nanodiamonds in Biomolecular Mass Spectrometry

    Directory of Open Access Journals (Sweden)

    Ping Cheng

    2010-03-01

    Full Text Available The combination of nanodiamond (ND with biomolecular mass spectrometry (MS makes rapid, sensitive detection of biopolymers from complex biosamples feasible. Due to its chemical inertness, optical transparency and biocompatibility, the advantage of NDs in MS study is unique. Furthermore, functionalization on the surfaces of NDs expands their application in the fields of proteomics and genomics for specific requirements greatly. This review presents methods of MS analysis based on solid phase extraction and elution on NDs and different application examples including peptide, protein, DNA, glycan and others. Owing to the quick development of nanotechnology, surface chemistry, new MS methods and the intense interest in proteomics and genomics, a huge increase of their applications in biomolecular MS analysis in the near future can be predicted.

  15. Vision and visual information processing in cubozoans

    DEFF Research Database (Denmark)

    Bielecki, Jan

    to analyse the received information, illustrated by the fact that one third of the human brain is devoted to visual information processing. The cost of maintaining such neural network deter most organisms from investing in the camera type option, if possible, and settle for a model that will more precisely...... 1000 neurons, which make these stunning animals the perfect model organism to explore basic visual information processing....... relationship between acuity and light sensitivity. Animals have evolved a wide variety of solutions to this problem such as folded membranes, to have a larger receptive surfaces, and lenses, to focus light onto the receptive membranes. On the neural capacity side, complex eyes demand huge processing network...

  16. SWISS-PROT: connecting biomolecular knowledge via a protein database.

    Science.gov (United States)

    Gasteiger, E; Jung, E; Bairoch, A

    2001-07-01

    With the explosive growth of biological data, the development of new means of data storage was needed. More and more often biological information is no longer published in the conventional way via a publication in a scientific journal, but only deposited into a database. In the last two decades these databases have become essential tools for researchers in biological sciences. Biological databases can be classified according to the type of information they contain. There are basically three types of sequence-related databases (nucleic acid sequences, protein sequences and protein tertiary structures) as well as various specialized data collections. It is important to provide the users of biomolecular databases with a degree of integration between these databases as by nature all of these databases are connected in a scientific sense and each one of them is an important piece to biological complexity. In this review we will highlight our effort in connecting biological information as demonstrated in the SWISS-PROT protein database.

  17. Consciousness: a unique way of processing information.

    Science.gov (United States)

    Marchetti, Giorgio

    2018-02-08

    In this article, I argue that consciousness is a unique way of processing information, in that: it produces information, rather than purely transmitting it; the information it produces is meaningful for us; the meaning it has is always individuated. This uniqueness allows us to process information on the basis of our personal needs and ever-changing interactions with the environment, and consequently to act autonomously. Three main basic cognitive processes contribute to realize this unique way of information processing: the self, attention and working memory. The self, which is primarily expressed via the central and peripheral nervous systems, maps our body, the environment, and our relations with the environment. It is the primary means by which the complexity inherent to our composite structure is reduced into the "single voice" of a unique individual. It provides a reference system that (albeit evolving) is sufficiently stable to define the variations that will be used as the raw material for the construction of conscious information. Attention allows for the selection of those variations in the state of the self that are most relevant in the given situation. Attention originates and is deployed from a single locus inside our body, which represents the center of the self, around which all our conscious experiences are organized. Whatever is focused by attention appears in our consciousness as possessing a spatial quality defined by this center and the direction toward which attention is focused. In addition, attention determines two other features of conscious experience: periodicity and phenomenal quality. Self and attention are necessary but not sufficient for conscious information to be produced. Complex forms of conscious experiences, such as the various modes of givenness of conscious experience and the stream of consciousness, need a working memory mechanism to assemble the basic pieces of information selected by attention.

  18. Selected topics in solution-phase biomolecular NMR spectroscopy

    Science.gov (United States)

    Kay, Lewis E.; Frydman, Lucio

    2017-05-01

    Solution bio-NMR spectroscopy continues to enjoy a preeminent role as an important tool in elucidating the structure and dynamics of a range of important biomolecules and in relating these to function. Equally impressive is how NMR continues to 'reinvent' itself through the efforts of many brilliant practitioners who ask increasingly demanding and increasingly biologically relevant questions. The ability to manipulate spin Hamiltonians - almost at will - to dissect the information of interest contributes to the success of the endeavor and ensures that the NMR technology will be well poised to contribute to as yet unknown frontiers in the future. As a tribute to the versatility of solution NMR in biomolecular studies and to the continued rapid advances in the field we present a Virtual Special Issue (VSI) that includes over 40 articles on various aspects of solution-state biomolecular NMR that have been published in the Journal of Magnetic Resonance in the past 7 years. These, in total, help celebrate the achievements of this vibrant field.

  19. Information processing for aerospace structural health monitoring

    Science.gov (United States)

    Lichtenwalner, Peter F.; White, Edward V.; Baumann, Erwin W.

    1998-06-01

    Structural health monitoring (SHM) technology provides a means to significantly reduce life cycle of aerospace vehicles by eliminating unnecessary inspections, minimizing inspection complexity, and providing accurate diagnostics and prognostics to support vehicle life extension. In order to accomplish this, a comprehensive SHM system will need to acquire data from a wide variety of diverse sensors including strain gages, accelerometers, acoustic emission sensors, crack growth gages, corrosion sensors, and piezoelectric transducers. Significant amounts of computer processing will then be required to convert this raw sensor data into meaningful information which indicates both the diagnostics of the current structural integrity as well as the prognostics necessary for planning and managing the future health of the structure in a cost effective manner. This paper provides a description of the key types of information processing technologies required in an effective SHM system. These include artificial intelligence techniques such as neural networks, expert systems, and fuzzy logic for nonlinear modeling, pattern recognition, and complex decision making; signal processing techniques such as Fourier and wavelet transforms for spectral analysis and feature extraction; statistical algorithms for optimal detection, estimation, prediction, and fusion; and a wide variety of other algorithms for data analysis and visualization. The intent of this paper is to provide an overview of the role of information processing for SHM, discuss various technologies which can contribute to accomplishing this role, and present some example applications of information processing for SHM implemented at the Boeing Company.

  20. Biomolecular electrostatics and solvation: a computational perspective.

    Science.gov (United States)

    Ren, Pengyu; Chun, Jaehun; Thomas, Dennis G; Schnieders, Michael J; Marucho, Marcelo; Zhang, Jiajing; Baker, Nathan A

    2012-11-01

    An understanding of molecular interactions is essential for insight into biological systems at the molecular scale. Among the various components of molecular interactions, electrostatics are of special importance because of their long-range nature and their influence on polar or charged molecules, including water, aqueous ions, proteins, nucleic acids, carbohydrates, and membrane lipids. In particular, robust models of electrostatic interactions are essential for understanding the solvation properties of biomolecules and the effects of solvation upon biomolecular folding, binding, enzyme catalysis, and dynamics. Electrostatics, therefore, are of central importance to understanding biomolecular structure and modeling interactions within and among biological molecules. This review discusses the solvation of biomolecules with a computational biophysics view toward describing the phenomenon. While our main focus lies on the computational aspect of the models, we provide an overview of the basic elements of biomolecular solvation (e.g. solvent structure, polarization, ion binding, and non-polar behavior) in order to provide a background to understand the different types of solvation models.

  1. Introduction to quantum physics and information processing

    CERN Document Server

    Vathsan, Radhika

    2016-01-01

    An Elementary Guide to the State of the Art in the Quantum Information FieldIntroduction to Quantum Physics and Information Processing guides beginners in understanding the current state of research in the novel, interdisciplinary area of quantum information. Suitable for undergraduate and beginning graduate students in physics, mathematics, or engineering, the book goes deep into issues of quantum theory without raising the technical level too much.The text begins with the basics of quantum mechanics required to understand how two-level systems are used as qubits. It goes on to show how quant

  2. Scalable Networked Information Processing Environment (SNIPE)

    Energy Technology Data Exchange (ETDEWEB)

    Fagg, G.E.; Moore, K. [Univ. of Tennessee, Knoxville, TN (United States). Dept. of Computer Science; Dongarra, J.J. [Univ. of Tennessee, Knoxville, TN (United States). Dept. of Computer Science]|[Oak Ridge National Lab., TN (United States). Computer Science and Mathematics Div.; Geist, A. [Oak Ridge National Lab., TN (United States). Computer Science and Mathematics Div.

    1997-11-01

    SNIPE is a metacomputing system that aims to provide a reliable, secure, fault tolerant environment for long term distributed computing applications and data stores across the global Internet. This system combines global naming and replication of both processing and data to support large scale information processing applications leading to better availability and reliability than currently available with typical cluster computing and/or distributed computer environments.

  3. Information Processing in Auto-regulated Systems

    Directory of Open Access Journals (Sweden)

    Karl Javorszky

    2003-06-01

    Full Text Available Abstract: We present a model of information processing which is based on two concurrent ways of describing the world, where a description in one of the languages limits the possibilities for realisations in the other language. The two describing dimensions appear in our common sense as dichotomies of perspectives: subjective - objective; diversity - similarity; individual - collective. We abstract from the subjective connotations and treat the test theoretical case of an interval on which several concurrent categories can be introduced. We investigate multidimensional partitions as potential carriers of information and compare their efficiency to that of sequenced carriers. We regard the same assembly once as a contemporary collection, once as a longitudinal sequence and find promising inroads towards understanding information processing by auto-regulated systems. Information is understood to point out that what is the case from among alternatives, which could be the case. We have translated these ideas into logical operations on the set of natural numbers and have found two equivalence points on N where matches between sequential and commutative ways of presenting a state of the world can agree in a stable fashion: a flip-flop mechanism is envisioned. By following this new approach, a mathematical treatment of some poignant biomathematical problems is allowed. Also, the concepts presented in this treatise may well have relevance and applications within the information processing and the theory of language fields.

  4. Ultrasensitive electrochemical biomolecular detection using nanostructured microelectrodes.

    Science.gov (United States)

    Sage, Andrew T; Besant, Justin D; Lam, Brian; Sargent, Edward H; Kelley, Shana O

    2014-08-19

    Electrochemical sensors have the potential to achieve sensitive, specific, and low-cost detection of biomolecules--a capability that is ever more relevant to the diagnosis and monitored treatment of disease. The development of devices for clinical diagnostics based on electrochemical detection could provide a powerful solution for the routine use of biomarkers in patient treatment and monitoring and may overcome the many issues created by current methods, including the long sample-to-answer times, high cost, and limited prospects for lab-free use of traditional polymerase chain reaction, microarrays, and gene-sequencing technologies. In this Account, we summarize the advances in electrochemical biomolecular detection, focusing on a new and integrated platform that exploits the bottom-up fabrication of multiplexed electrochemical sensors composed of electrodeposited noble metals. We trace the evolution of these sensors from gold nanoelectrode ensembles to nanostructured microelectrodes (NMEs) and discuss the effects of surface morphology and size on assay performance. The development of a novel electrocatalytic assay based on Ru(3+) adsorption and Fe(3+) amplification at the electrode surface as a means to enable ultrasensitive analyte detection is discussed. Electrochemical measurements of changes in hybridization events at the electrode surface are performed using a simple potentiostat, which enables integration into a portable, cost-effective device. We summarize the strategies for proximal sample processing and detection in addition to those that enable high degrees of sensor multiplexing capable of measuring 100 different analytes on a single chip. By evaluating the cost and performance of various sensor substrates, we explore the development of practical lab-on-a-chip prototype devices. By functionalizing the NMEs with capture probes specific to nucleic acid, small molecule, and protein targets, we can successfully detect a wide variety of analytes at

  5. Conceptual Coordination Bridges Information Processing and Neurophysiology

    Science.gov (United States)

    Clancey, William J.; Norrig, Peter (Technical Monitor)

    2000-01-01

    Information processing theories of memory and skills can be reformulated in terms of how categories are physically and temporally related, a process called conceptual coordination. Dreaming can then be understood as a story understanding process in which two mechanisms found in everyday comprehension are missing: conceiving sequences (chunking categories in time as a categorization) and coordinating across modalities (e.g., relating the sound of a word and the image of its meaning). On this basis, we can readily identify isomorphisms between dream phenomenology and neurophysiology, and explain the function of dreaming as facilitating future coordination of sequential, cross-modal categorization (i.e., REM sleep lowers activation thresholds, "unlearning").

  6. Springfield Processing Plant (SPP) Facility Information

    Energy Technology Data Exchange (ETDEWEB)

    Leach, Janice; Torres, Teresa M.

    2012-10-01

    The Springfield Processing Plant is a hypothetical facility. It has been constructed for use in training workshops. Information is provided about the facility and its surroundings, particularly security-related aspects such as target identification, threat data, entry control, and response force data.

  7. Developments in quantum information processing by nuclear ...

    Indian Academy of Sciences (India)

    Abstract. Use of dipolar and quadrupolar couplings for quantum information processing (QIP) by nuclear magnetic resonance (NMR) is described. In these cases, instead of the individual spins being qubits, the 2n energy levels of the spin-system can be treated as an n-qubit system. It is demonstrated that QIP in such ...

  8. Influence Processes for Information Technology Acceptance

    DEFF Research Database (Denmark)

    Bhattacherjee, Anol; Sanford, Clive Carlton

    2006-01-01

    This study examines how processes of external influence shape information technology acceptance among potential users, how such influence effects vary across a user population, and whether these effects are persistent over time. Drawing on the elaboration-likelihood model (ELM), we compared two...

  9. Multidimensional biochemical information processing of dynamical patterns.

    Science.gov (United States)

    Hasegawa, Yoshihiko

    2018-02-01

    Cells receive signaling molecules by receptors and relay information via sensory networks so that they can respond properly depending on the type of signal. Recent studies have shown that cells can extract multidimensional information from dynamical concentration patterns of signaling molecules. We herein study how biochemical systems can process multidimensional information embedded in dynamical patterns. We model the decoding networks by linear response functions, and optimize the functions with the calculus of variations to maximize the mutual information between patterns and output. We find that, when the noise intensity is lower, decoders with different linear response functions, i.e., distinct decoders, can extract much information. However, when the noise intensity is higher, distinct decoders do not provide the maximum amount of information. This indicates that, when transmitting information by dynamical patterns, embedding information in multiple patterns is not optimal when the noise intensity is very large. Furthermore, we explore the biochemical implementations of these decoders using control theory and demonstrate that these decoders can be implemented biochemically through the modification of cascade-type networks, which are prevalent in actual signaling pathways.

  10. Multidimensional biochemical information processing of dynamical patterns

    Science.gov (United States)

    Hasegawa, Yoshihiko

    2018-02-01

    Cells receive signaling molecules by receptors and relay information via sensory networks so that they can respond properly depending on the type of signal. Recent studies have shown that cells can extract multidimensional information from dynamical concentration patterns of signaling molecules. We herein study how biochemical systems can process multidimensional information embedded in dynamical patterns. We model the decoding networks by linear response functions, and optimize the functions with the calculus of variations to maximize the mutual information between patterns and output. We find that, when the noise intensity is lower, decoders with different linear response functions, i.e., distinct decoders, can extract much information. However, when the noise intensity is higher, distinct decoders do not provide the maximum amount of information. This indicates that, when transmitting information by dynamical patterns, embedding information in multiple patterns is not optimal when the noise intensity is very large. Furthermore, we explore the biochemical implementations of these decoders using control theory and demonstrate that these decoders can be implemented biochemically through the modification of cascade-type networks, which are prevalent in actual signaling pathways.

  11. A process Approach to Information Services: Information Search Process (ISP Model

    Directory of Open Access Journals (Sweden)

    Hamid Keshavarz

    2010-12-01

    Full Text Available Information seeking is a behavior emerging out of the interaction between information seeker and information system and should be regarded as an episodic process so as to meet information needs of users and to take different roles in different stages of it. The present article introduces a process approach to information services in libraries using Carol Collier Kuhlthau Model. In this model, information seeking is regarded as a process consisting of six stages in each of which users have different thoughts, feelings and actions and librarians also take different roles at any stage correspondingly. These six stages are derived from instructive learning theory based on uncertainty principle. Regardless of some acceptable shortcomings, this model may be regarded as a new solution for rendering modern information services in libraries especially in relation to new information environments and media.

  12. Information Processing Capacity of Dynamical Systems

    Science.gov (United States)

    Dambre, Joni; Verstraeten, David; Schrauwen, Benjamin; Massar, Serge

    2012-07-01

    Many dynamical systems, both natural and artificial, are stimulated by time dependent external signals, somehow processing the information contained therein. We demonstrate how to quantify the different modes in which information can be processed by such systems and combine them to define the computational capacity of a dynamical system. This is bounded by the number of linearly independent state variables of the dynamical system, equaling it if the system obeys the fading memory condition. It can be interpreted as the total number of linearly independent functions of its stimuli the system can compute. Our theory combines concepts from machine learning (reservoir computing), system modeling, stochastic processes, and functional analysis. We illustrate our theory by numerical simulations for the logistic map, a recurrent neural network, and a two-dimensional reaction diffusion system, uncovering universal trade-offs between the non-linearity of the computation and the system's short-term memory.

  13. Information Processing Capacity of Dynamical Systems

    Science.gov (United States)

    Dambre, Joni; Verstraeten, David; Schrauwen, Benjamin; Massar, Serge

    2012-01-01

    Many dynamical systems, both natural and artificial, are stimulated by time dependent external signals, somehow processing the information contained therein. We demonstrate how to quantify the different modes in which information can be processed by such systems and combine them to define the computational capacity of a dynamical system. This is bounded by the number of linearly independent state variables of the dynamical system, equaling it if the system obeys the fading memory condition. It can be interpreted as the total number of linearly independent functions of its stimuli the system can compute. Our theory combines concepts from machine learning (reservoir computing), system modeling, stochastic processes, and functional analysis. We illustrate our theory by numerical simulations for the logistic map, a recurrent neural network, and a two-dimensional reaction diffusion system, uncovering universal trade-offs between the non-linearity of the computation and the system's short-term memory. PMID:22816038

  14. Expectation, information processing, and subjective duration.

    Science.gov (United States)

    Simchy-Gross, Rhimmon; Margulis, Elizabeth Hellmuth

    2018-01-01

    In research on psychological time, it is important to examine the subjective duration of entire stimulus sequences, such as those produced by music (Teki, Frontiers in Neuroscience, 10, 2016). Yet research on the temporal oddball illusion (according to which oddball stimuli seem longer than standard stimuli of the same duration) has examined only the subjective duration of single events contained within sequences, not the subjective duration of sequences themselves. Does the finding that oddballs seem longer than standards translate to entire sequences, such that entire sequences that contain oddballs seem longer than those that do not? Is this potential translation influenced by the mode of information processing-whether people are engaged in direct or indirect temporal processing? Two experiments aimed to answer both questions using different manipulations of information processing. In both experiments, musical sequences either did or did not contain oddballs (auditory sliding tones). To manipulate information processing, we varied the task (Experiment 1), the sequence event structure (Experiments 1 and 2), and the sequence familiarity (Experiment 2) independently within subjects. Overall, in both experiments, the sequences that contained oddballs seemed shorter than those that did not when people were engaged in direct temporal processing, but longer when people were engaged in indirect temporal processing. These findings support the dual-process contingency model of time estimation (Zakay, Attention, Perception & Psychophysics, 54, 656-664, 1993). Theoretical implications for attention-based and memory-based models of time estimation, the pacemaker accumulator and coding efficiency hypotheses of time perception, and dynamic attending theory are discussed.

  15. PREFACE: Radiation Damage in Biomolecular Systems (RADAM07)

    Science.gov (United States)

    McGuigan, Kevin G.

    2008-03-01

    , which include: theoretical, experimental, medical and computational physicists, radiation chemists, radiation biologists and microbiologists, among others. An important aspect of the previous 3 conferences in this series was to remove barriers between the different working groups and to encourage a more interdisciplinary approach to research collaborations. During RADAM_07 we could observe the success of these efforts. A large number of presentations were based on new collaborations, many funded under the COST STSM programme, and all presentations led to lively discussions. It is clear from the discussions following many of the presentations and at the poster sessions that Radiation Damage in Biomolecular Systems remains a topic of increasing interest, relevance and importance. The success of this conference as well as of the whole RADAM conference series reflects the growing international interest in the area of interactions of ionizing radiation with biomolecules. Despite the scheduled conclusion in September 2007 of COST Action P9 which has part-funded this, and previous RADAM meetings, the nature of the cross-disciplinary interactions and opportunities for collaborative research was deemed so successful and valuable by the assembled delegates that it was agreed that another such meeting should be held in Debrecen in Hungary from 13-15 June 2008 http://www.isa.au.dk/meetings/radam2008/programme.html. Additional information about RADAM07 programme is available on the conference web-page http://www.isa.au.dk/networks/cost/radam07/index.html. The Organizing Committee would like to thank all speakers, contributors, session chairs, referees and meeting staff for their efforts in making the RADAM07 successful. The local Organization Committee would like to thank Lorraine Monard and Margaret Nolan for their invaluable expertise in conference management. We also gratefully acknowledge the financial support of our sponsors - The Royal, College of Surgeons in Ireland (RCSI

  16. Information processing of earth resources data

    Science.gov (United States)

    Zobrist, A. L.; Bryant, N. A.

    1982-01-01

    Current trends in the use of remotely sensed data include integration of multiple data sources of various formats and use of complex models. These trends have placed a strain on information processing systems because an enormous number of capabilities are needed to perform a single application. A solution to this problem is to create a general set of capabilities which can perform a wide variety of applications. General capabilities for the Image-Based Information System (IBIS) are outlined in this report. They are then cross-referenced for a set of applications performed at JPL.

  17. Disjunctive Information Flow for Communicating Processes

    DEFF Research Database (Denmark)

    Li, Ximeng; Nielson, Flemming; Nielson, Hanne Riis

    2016-01-01

    The security validation of practical computer systems calls for the ability to specify and verify information flow policies that are dependent on data content. Such policies play an important role in concurrent, communicating systems: consider a scenario where messages are sent to different...... processes according to their tagging. We devise a security type system that enforces content-dependent information flow policies in the presence of communication and concurrency. The type system soundly guarantees a compositional noninterference property. All theoretical results have been formally proved...

  18. [Information Processing in the Auditory Ventral Stream].

    Science.gov (United States)

    Fukushima, Makoto; Ojima, Hisayuki

    2016-11-01

    The auditory cortex in humans comprises multiple auditory fields organized hierarchically, similar to that in non-human primates. The ventral auditory stream of the macaque consists of several subdivisions on the supratemporal plane (STP) and the superior temporal gyrus (STG). There are two main axes (caudorostral and mediolateral) for processing auditory information in the STP and STG. Here, we review the neural basis of the integration of spectral and temporal auditory information along the two axes of the ventral auditory stream in the macaque.

  19. Radiation damage in biomolecular systems

    CERN Document Server

    Fuss, Martina Christina

    2012-01-01

    Since the discovery of X-rays and radioactivity, ionizing radiations have been widely applied in medicine both for diagnostic and therapeutic purposes. The risks associated with radiation exposure and handling led to the parallel development of the field of radiation protection. Pioneering experiments done by Sanche and co-workers in 2000 showed that low-energy secondary electrons, which are abundantly generated along radiation tracks, are primarily responsible for radiation damage through successive interactions with the molecular constituents of the medium. Apart from ionizing processes, which are usually related to radiation damage, below the ionization level low-energy electrons can induce molecular fragmentation via dissociative processes such as internal excitation and electron attachment. This prompted collaborative projects between different research groups from European countries together with other specialists from Canada,  the USA and Australia. This book summarizes the advances achieved by these...

  20. Processing threatening information in posttraumatic stress disorder.

    Science.gov (United States)

    Bryant, R A; Harvey, A G

    1995-08-01

    The authors used a modified Stroop task to study how people with posttraumatic stress disorder (PTSD) process threatening information. Participants were motor vehicle accident (MVA) survivors with either PTSD (n = 15), simple phobia of driving (n = 15), or low anxiety (n = 15). Participants named colors of 4 types of words: strong threat words (MVA related), mild threat words (MVA related), positive words, and neutral words. Participants with PTSD demonstrated greater interference on strong threat words than those with simple phobia or low anxiety. Contrary to expectation, participants with simple phobia did not display an interference effect. Findings suggest that individuals with PTSD and simple phobia may process threatening information differently. The nature of attentional bias in different anxiety conditions following trauma is discussed.

  1. Fractional Transforms in Optical Information Processing

    Directory of Open Access Journals (Sweden)

    Maria Luisa Calvo

    2005-06-01

    Full Text Available We review the progress achieved in optical information processing during the last decade by applying fractional linear integral transforms. The fractional Fourier transform and its applications for phase retrieval, beam characterization, space-variant pattern recognition, adaptive filter design, encryption, watermarking, and so forth is discussed in detail. A general algorithm for the fractionalization of linear cyclic integral transforms is introduced and it is shown that they can be fractionalized in an infinite number of ways. Basic properties of fractional cyclic transforms are considered. The implementation of some fractional transforms in optics, such as fractional Hankel, sine, cosine, Hartley, and Hilbert transforms, is discussed. New horizons of the application of fractional transforms for optical information processing are underlined.

  2. Image gathering and processing - Information and fidelity

    Science.gov (United States)

    Huck, F. O.; Fales, C. L.; Halyo, N.; Samms, R. W.; Stacy, K.

    1985-01-01

    In this paper we formulate and use information and fidelity criteria to assess image gathering and processing, combining optical design with image-forming and edge-detection algorithms. The optical design of the image-gathering system revolves around the relationship among sampling passband, spatial response, and signal-to-noise ratio (SNR). Our formulations of information, fidelity, and optimal (Wiener) restoration account for the insufficient sampling (i.e., aliasing) common in image gathering as well as for the blurring and noise that conventional formulations account for. Performance analyses and simulations for ordinary optical-design constraints and random scences indicate that (1) different image-forming algorithms prefer different optical designs; (2) informationally optimized designs maximize the robustness of optimal image restorations and lead to the highest-spatial-frequency channel (relative to the sampling passband) for which edge detection is reliable (if the SNR is sufficiently high); and (3) combining the informationally optimized design with a 3 by 3 lateral-inhibitory image-plane-processing algorithm leads to a spatial-response shape that approximates the optimal edge-detection response of (Marr's model of) human vision and thus reduces the data preprocessing and transmission required for machine vision.

  3. Quantum information processing and nuclear magnetic resonance

    International Nuclear Information System (INIS)

    Cummins, H.K.

    2001-01-01

    Quantum computers are information processing devices which operate by and exploit the laws of quantum mechanics, potentially allowing them to solve problems which are intractable using classical computers. This dissertation considers the practical issues involved in one of the more successful implementations to date, nuclear magnetic resonance (NMR). Techniques for dealing with systematic errors are presented, and a quantum protocol is implemented. Chapter 1 is a brief introduction to quantum computation. The physical basis of its efficiency and issues involved in its implementation are discussed. NMR quantum information processing is reviewed in more detail in Chapter 2. Chapter 3 considers some of the errors that may be introduced in the process of implementing an algorithm, and high-level ways of reducing the impact of these errors by using composite rotations. Novel general expressions for stabilising composite rotations are presented in Chapter 4 and a new class of composite rotations, tailored composite rotations, presented in Chapter 5. Chapter 6 describes some of the advantages and pitfalls of combining composite rotations. Experimental evaluations of the composite rotations are given in each case. An actual implementation of a quantum information protocol, approximate quantum cloning, is presented in Chapter 7. The dissertation ends with appendices which contain expansions of some equations and detailed calculations of certain composite rotation results, as well as spectrometer pulse sequence programs. (author)

  4. Scalable Molecular Dynamics for Large Biomolecular Systems

    Directory of Open Access Journals (Sweden)

    Robert K. Brunner

    2000-01-01

    Full Text Available We present an optimized parallelization scheme for molecular dynamics simulations of large biomolecular systems, implemented in the production-quality molecular dynamics program NAMD. With an object-based hybrid force and spatial decomposition scheme, and an aggressive measurement-based predictive load balancing framework, we have attained speeds and speedups that are much higher than any reported in literature so far. The paper first summarizes the broad methodology we are pursuing, and the basic parallelization scheme we used. It then describes the optimizations that were instrumental in increasing performance, and presents performance results on benchmark simulations.

  5. Micro and Nanotechnologies Enhanced Biomolecular Sensing

    Directory of Open Access Journals (Sweden)

    Tza-Huei Wang

    2013-07-01

    Full Text Available This editorial summarizes some of the recent advances of micro and nanotechnology-based tools and devices for biomolecular detection. These include the incorporation of nanomaterials into a sensor surface or directly interfacing with molecular probes to enhance target detection via more rapid and sensitive responses, and the use of self-assembled organic/inorganic nanocomposites that inhibit exceptional spectroscopic properties to enable facile homogenous assays with efficient binding kinetics. Discussions also include some insight into microfluidic principles behind the development of an integrated sample preparation and biosensor platform toward a miniaturized and fully functional system for point of care applications.

  6. DNA-assisted swarm control in a biomolecular motor system.

    Science.gov (United States)

    Keya, Jakia Jannat; Suzuki, Ryuhei; Kabir, Arif Md Rashedul; Inoue, Daisuke; Asanuma, Hiroyuki; Sada, Kazuki; Hess, Henry; Kuzuya, Akinori; Kakugo, Akira

    2018-01-31

    In nature, swarming behavior has evolved repeatedly among motile organisms because it confers a variety of beneficial emergent properties. These include improved information gathering, protection from predators, and resource utilization. Some organisms, e.g., locusts, switch between solitary and swarm behavior in response to external stimuli. Aspects of swarming behavior have been demonstrated for motile supramolecular systems composed of biomolecular motors and cytoskeletal filaments, where cross-linkers induce large scale organization. The capabilities of such supramolecular systems may be further extended if the swarming behavior can be programmed and controlled. Here, we demonstrate that the swarming of DNA-functionalized microtubules (MTs) propelled by surface-adhered kinesin motors can be programmed and reversibly regulated by DNA signals. Emergent swarm behavior, such as translational and circular motion, can be selected by tuning the MT stiffness. Photoresponsive DNA containing azobenzene groups enables switching between solitary and swarm behavior in response to stimulation with visible or ultraviolet light.

  7. Review of MEMS differential scanning calorimetry for biomolecular study

    Science.gov (United States)

    Yu, Shifeng; Wang, Shuyu; Lu, Ming; Zuo, Lei

    2017-12-01

    Differential scanning calorimetry (DSC) is one of the few techniques that allow direct determination of enthalpy values for binding reactions and conformational transitions in biomolecules. It provides the thermodynamics information of the biomolecules which consists of Gibbs free energy, enthalpy and entropy in a straightforward manner that enables deep understanding of the structure function relationship in biomolecules such as the folding/unfolding of protein and DNA, and ligand bindings. This review provides an up to date overview of the applications of DSC in biomolecular study such as the bovine serum albumin denaturation study, the relationship between the melting point of lysozyme and the scanning rate. We also introduce the recent advances of the development of micro-electro-mechanic-system (MEMS) based DSCs.

  8. Biomolecular Aspects of Mercury Transformations

    Science.gov (United States)

    Johs, A.; Shi, L.; Miller, S. M.; Summers, A. O.; Liang, L.

    2008-12-01

    Bacteria participate significantly in mercury transformation in natural and industrial environments. Previous studies have shown that bacterial mercury resistance is mediated by the mer operon, typically located on transposons or plasmids. It encodes specific genes that facilitate uptake of mercury species, cleavage of organomercurials, and reduction of Hg(II) to Hg(0). Expression of mer operon genes is regulated by MerR, a metal-responsive regulator protein on the level of transcription. In vitro studies have shown that MerR forms a non-transcribing pre-initiation complex with RNA polymerase and the promoter DNA. Binding of Hg(II) induces conformational changes in MerR and other components of the complex resulting in the transcription of mer operon genes. As part of ongoing investigations on allosteric conformational changes induced by Hg(II) in dimeric MerR, and the implications on the binding of RNA polymerase to the promoter of the mer operon, we applied small angle scattering to study the regulatory mechanism of MerR in the presence and absence of Hg(II). Our results show that in the presence of Hg(II) the MerR dimer undergoes a significant reorientation from a compact state to a conformation revealing two distinct domains. Bacterial reduction of Hg(II) can also occur at concentrations too low to induce mer operon functions. Dissimilatory metal reducing bacteria, such as Shewanella and Geobacter are able to reduce Hg(II) in the presence of mineral oxides. This process has been linked to the activity of outer membrane multiheme cytochromes. We isolated and purified a decaheme outer membrane cytochrome OmcA from Shewanella oneidensis MR-1 and characterized its envelope shape in solution by small angle x-ray scattering. Structural features were identified and compared to homology models. These results show that OmcA is an elongated macromolecule consisting of separate modules, which may be connected by flexible linkers.

  9. Energy dissipation in biomolecular machines

    Energy Technology Data Exchange (ETDEWEB)

    Lervik, Anders

    2012-07-01

    The operation of a molecular pump, the calcium pump of sarcoplasmic reticulum is studied using mesoscopic non-equilibrium thermodynamics and molecular dynamics. The mesoscopic non-equilibrium thermodynamic description of the pump is compared to the description obtained in the framework of Hill for kinetic enzyme cycles. By comparing these two descriptions at isothermal conditions, they are found to be equivalent. This supports the validity of the mesoscopic approach. An extension of the mesoscopic non-equilibrium framework to also include a heat flux and the corresponding temperature difference is proposed. This can be used to model phenomena such as non-shivering thermogenesis, a process which lack a theoretical description in the kinetic cycle picture. Further, the heat transfer in the calcium pump is studied using molecular dynamics. This is done in order to obtain phenomenological parameters that can be used for the modeling of thermogenesis. A non-stationary non-equilibrium molecular dynamics approach is developed, which may be used to study heat transfer between a small object and the surrounding solvent. This methodology is applied to the calcium pump solvated in water. It is found that the thermal conductivity of the protein is low (0.2 W K-1 m-1) compared to water (0.6 WK-1 m-1). This means that the protein may sustain a large temperature gradient across its structure. The simulations also show that the protein-water surface is important for the heat transfer. The time scale for vibrational energy relaxation is found to be of order 10/100 ps which strengthens the local equilibrium assumption of mesoscopic non-equilibrium thermodynamics. Mesoscopic non-equilibrium thermodynamics is also applied to calculate the thermodynamic efficiency of the calcium pump embedded in lipid bilayers of varying length and from different tissues. This is done in order to show the applicability of mesoscopic non-equilibrium thermodynamics to interpret experimental data. The

  10. Physiological arousal in processing recognition information

    Directory of Open Access Journals (Sweden)

    Guy Hochman

    2010-07-01

    Full Text Available The recognition heuristic (RH; Goldstein and Gigerenzer, 2002 suggests that, when applicable, probabilistic inferences are based on a noncompensatory examination of whether an object is recognized or not. The overall findings on the processes that underlie this fast and frugal heuristic are somewhat mixed, and many studies have expressed the need for considering a more compensatory integration of recognition information. Regardless of the mechanism involved, it is clear that recognition has a strong influence on choices, and this finding might be explained by the fact that recognition cues arouse affect and thus receive more attention than cognitive cues. To test this assumption, we investigated whether recognition results in a direct affective signal by measuring physiological arousal (i.e., peripheral arterial tone in the established city-size task. We found that recognition of cities does not directly result in increased physiological arousal. Moreover, the results show that physiological arousal increased with increasing inconsistency between recognition information and additional cue information. These findings support predictions derived by a compensatory Parallel Constraint Satisfaction model rather than predictions of noncompensatory models. Additional results concerning confidence ratings, response times, and choice proportions further demonstrated that recognition information and other cognitive cues are integrated in a compensatory manner.

  11. Vision and visual information processing in cubozoans

    DEFF Research Database (Denmark)

    Bielecki, Jan

    Eyes have been considered support for the divine design hypothesis over evolution because, surely, eyes cannot function with anything less than all the components that comprise a vertebrate camera type eye. Yet, devoted Darwinists have estimated that complex visual systems can evolve from a single...... light sensitive cell within 400 000 generations and all intermediate stages can be found throughout the Metazoa. Eyes have evolved to accommodate increasingly more complex visual behaviours, from light sensitive tissues involved in circadian entrainment to the complex camera type eyes that can guide...... to analyse the received information, illustrated by the fact that one third of the human brain is devoted to visual information processing. The cost of maintaining such neural network deter most organisms from investing in the camera type option, if possible, and settle for a model that will more precisely...

  12. Effects of noise upon human information processing

    Science.gov (United States)

    Cohen, H. H.; Conrad, D. W.; Obrien, J. F.; Pearson, R. G.

    1974-01-01

    Studies of noise effects upon human information processing are described which investigated whether or not effects of noise upon performance are dependent upon specific characteristics of noise stimulation and their interaction with task conditions. The difficulty of predicting noise effects was emphasized. Arousal theory was considered to have explanatory value in interpreting the findings of all the studies. Performance under noise was found to involve a psychophysiological cost, measured by vasoconstriction response, with the degree of response cost being related to scores on a noise annoyance sensitivity scale. Noise sensitive subjects showed a greater autonomic response under noise stimulation.

  13. Information processing of sexual abuse in elders.

    Science.gov (United States)

    Burgess, Ann W; Clements, Paul T

    2006-01-01

    Sexual abuse is considered to be a pandemic contemporary public health issue, with significant physical and psychosocial consequences for its victims. However, the incidence of elder sexual assault is difficult to estimate with any degree of confidence. A convenience sample of 284 case records were reviewed for Post-Traumatic Stress Disorder (PTSD) symptoms. The purpose of this paper is to present the limited data noted on record review on four PTSD symptoms of startle, physiological upset, anger, and numbness. A treatment model for information processing of intrapsychic trauma is presented to describe domain disruption within a nursing diagnosis of rape trauma syndrome and provide guidance for sensitive assessment and intervention.

  14. Information processing bias in anorexia nervosa.

    Science.gov (United States)

    Southgate, Laura; Tchanturia, Kate; Treasure, Janet

    2008-08-15

    The aim of this study was to investigate preferential information processing style in Eating Disorders (ED). We compared the performance of participants with EDs against healthy controls in a task that measures cognitive style (reflection-impulsivity) and cognitive efficiency (inefficient-efficient). Sixty non-medicated female participants (healthy controls n=26, anorexia nervosa n=20, bulimia nervosa n=14) took part in the Matching Familiar Figures Test (MFFT), a difficult visual search paradigm with high response uncertainty. Participants with anorexia scored significantly higher on the efficiency dimension score than the control group. No significant differences were found across groups on the dimension 'reflection-impulsivity'. Participants with anorexia are more efficient (quicker response latencies in conjunction with fewer errors) in this visual search task that requires an analytic approach. This supports the hypothesis that individuals with anorexia have a positive bias toward local detail processing, indicative of weak central coherence.

  15. Quantifying the topography of the intrinsic energy landscape of flexible biomolecular recognition

    Science.gov (United States)

    Chu, Xiakun; Gan, Linfeng; Wang, Erkang; Wang, Jin

    2013-01-01

    Biomolecular functions are determined by their interactions with other molecules. Biomolecular recognition is often flexible and associated with large conformational changes involving both binding and folding. However, the global and physical understanding for the process is still challenging. Here, we quantified the intrinsic energy landscapes of flexible biomolecular recognition in terms of binding–folding dynamics for 15 homodimers by exploring the underlying density of states, using a structure-based model both with and without considering energetic roughness. By quantifying three individual effective intrinsic energy landscapes (one for interfacial binding, two for monomeric folding), the association mechanisms for flexible recognition of 15 homodimers can be classified into two-state cooperative “coupled binding–folding” and three-state noncooperative “folding prior to binding” scenarios. We found that the association mechanism of flexible biomolecular recognition relies on the interplay between the underlying effective intrinsic binding and folding energy landscapes. By quantifying the whole global intrinsic binding–folding energy landscapes, we found strong correlations between the landscape topography measure Λ (dimensionless ratio of energy gap versus roughness modulated by the configurational entropy) and the ratio of the thermodynamic stable temperature versus trapping temperature, as well as between Λ and binding kinetics. Therefore, the global energy landscape topography determines the binding–folding thermodynamics and kinetics, crucial for the feasibility and efficiency of realizing biomolecular function. We also found “U-shape” temperature-dependent kinetic behavior and a dynamical cross-over temperature for dividing exponential and nonexponential kinetics for two-state homodimers. Our study provides a unique way to bridge the gap between theory and experiments. PMID:23754431

  16. Ultrafast Electrons and X-rays as Probe of Biomolecular Dynamics

    Science.gov (United States)

    Subramanian, Ganesh

    The structure-function relation in Biology suggests that every biological molecule has evolved its structure to carry out a specific function. However, for many of these processes (such as those with catalytic activity) the structure of the biomolecule changes during the course of a reaction. Understanding the structure-function relation thus becomes a question of understanding biomolecular dynamics that span a variety of timescales (from electronic rearrangements in the femtoseconds to side-chain alteration in the microseconds and more). This dissertation deals with the study of biomolecular dynamics in the ultrafast timescales (fs-ns) using electron and X-ray probes in both time and frequency domains. It starts with establishing the limitations of traditional electron diffraction coupled with molecular replacement to study biomolecular structure and proceeds to suggest a pulsed electron source Hollow-Cone Transmission Electron Microscope as an alternative scheme to pursue ultrafast biomolecular imaging. In frequency domain, the use of Electron Energy Loss Spectroscopy as a tool to access ultrafast nuclear dynamics in the steady state, is detailed with the new monochromated NiON UltraSTEM and examples demonstrating this instrument's capability are provided. Ultrafast X-ray spectroscopy as a tool to elucidate biomolecular dynamics is presented in studying X-ray as a probe, with the study of the photolysis of Methylcobalamin using time-resolved laser pump--X-ray probe absorption spectroscopy. The analysis in comparison to prior literature as well as DFT based XAS simulations offer good agreement and understanding to the steady state spectra but are so far inadequate in explaining the time-resolved data. However, the trends in the absorption simulations for the transient intermediates show a strong anisotropic dependence on the axial ligation, which would define the direction for future studies on this material to achieve a solution.

  17. Motivated information processing and group decision-making : Effects of process accountability on information processing and decision quality

    NARCIS (Netherlands)

    Scholten, Lotte; van Knippenberg, Daan; Nijstad, Bernard A.; De Dreu, Carsten K. W.

    Integrating dual-process models [Chaiken, S., & Trope, Y. (Eds.). (1999). Dual-process theories in social psychology. NewYork: Guilford Press] with work on information sharing and group decision-making [Stasser, G., & Titus, W. (1985). Pooling of unshared information in group decision making: biased

  18. Information-processing, storage characteristics and worry.

    Science.gov (United States)

    Pratt, P; Tallis, F; Eysenck, M

    1997-11-01

    Eysenck (1984, Bulletin of the Psychonomic Society, 22, 545-548) suggested that storage characteristics may be an important determinant of worry, and postulated that prolonged worry occurs in individuals who have tightly organised clusters of worry-related information stored in long-term memory. These clusters reflect areas or domains of worry. Because the information is stored in tight clusters, it becomes more accessible, more rapidly activated and therefore retrieved more quickly. The Worry Domains Questionnaire (WDQ) (Tallis, 1991c) is used to determine which domain worried subjects most (Primary) and least (Secondary). Two experiments are reported using a word allocation task, which requires subjects to make categorical decisions, based on these worry domains. It is reported that priming facilitates the emergence of domain effects, thus providing support for a structural hypothesis. High worries take longer to reject negative words if they are from the Primary domain and have difficulty rejecting Primary domain words when they are under a congruent heading. In addition, high worriers are reported to show retarded latencies when attempting to process ambiguous information, consistent with Metzger et al.'s studies (1990, Journal of Clinical Psychology, 48, 76-88). It is suggested that the initiation and maintenance of worry is largely attributable to an elevated evidence requirement and this may link to the personality trait of perfectionism.

  19. Latency Minimizing Tasking for Information Processing Systems

    Energy Technology Data Exchange (ETDEWEB)

    Horey, James L [ORNL; Lagesse, Brent J [ORNL

    2011-01-01

    Real-time cyber-physical systems and information processing clusters require system designers to consider the total latency involved in collecting and aggregating data. For example, applications such as wild-fire monitoring require data to be presented to users in a timely manner. However, most models and algorithms for sensor networks have focused on alternative metrics such as energy efficiency. In this paper, we present a new model of sensor network aggregation that focuses on total latency. Our model is flexible and enables users to configure varying transmission and computation time on a node-by-node basis, and thus enables the simulation of complex computational phenomena. In addition, we present results from three tasking algorithms that trade-off local communication for overall latency performance. These algorithms are evaluated in simulated networks of up to 200 nodes. We've presented an aggregation-focused model of sensor networks that can be used to study the trade-offs between computational coverage and total latency. Our model explicitly takes into account transmission and computation times, and enables users to define different values for the basestation. In addition, we've presented three different tasking algorithms that operate over model to produce aggregation schedules of varying quality. In the future, we expect to continue exploring distributed tasking algorithms for information processing systems. We've shown that the gap between highly optimized schedules that use global information is quite large relative to our distributed algorithms. This gives us encouragement that future distributed tasking algorithms can still make large gains.

  20. Quantum teleportation for continuous variables and related quantum information processing

    International Nuclear Information System (INIS)

    Furusawa, Akira; Takei, Nobuyuki

    2007-01-01

    Quantum teleportation is one of the most important subjects in quantum information science. This is because quantum teleportation can be regarded as not only quantum information transfer but also a building block for universal quantum information processing. Furthermore, deterministic quantum information processing is very important for efficient processing and it can be realized with continuous-variable quantum information processing. In this review, quantum teleportation for continuous variables and related quantum information processing are reviewed from these points of view

  1. The Search for New Information Processing technologies

    Science.gov (United States)

    Cavin, Ralph K.

    2005-03-01

    Our society has benefited from the ‘Golden Age of Electronics’ for the last half century. The ubiquitous transistor, in its many manifestations, has enabled an explosion of capabilities in information processing, communications, and sensing that has spurred exponential growth in performance-benefit ratios. Much of the credit for this progress is due to the continued scaling of the silicon integrated circuit (IC) components and to the associated efficient fabrication processes that have made the IC affordable. There is a growing realization, from simple physics arguments, that as minimum features sizes approach the ten nanometer regime, scaling will very likely slow and eventually end. This doesn’t mean that the MOSFET will disappear, but more likely that it will need to be supplemented by other device and interconnect technologies if the exponential gains are to continue. In this talk we discuss the basis for the projected limitation of scaling of charge-based devices for logic and memory devices. We argue that a fundamental consideration for all devices, including those based on charge, relates to the capacity to manage heat generated by circuit operation. Our preference is for devices that operate at room temperature since the energy costs for cooling the devices must also be charged against the overall system energy consumption. (Cooling costs increase as a power of the difference between the ambient and the target temperature.) Therefore we seek new state variables to serve as an alternative to electrical charge for future information processing technologies. These technologies must provide the potential for sustaining exponential performance-cost benefits with time. The search must not only focus on device structures but on the underlying materials and process technologies that enable these structures. Indeed, to obtain extremely scaled CMOS, new materials and processes must also be developed. In this talk, we survey some of the candidates for

  2. Integration of biomolecular logic gates with field-effect transducers

    International Nuclear Information System (INIS)

    Poghossian, A.; Malzahn, K.; Abouzar, M.H.; Mehndiratta, P.; Katz, E.; Schoening, M.J.

    2011-01-01

    Highlights: → Enzyme-based AND/OR logic gates are integrated with a capacitive field-effect sensor. → The AND/OR logic gates compose of multi-enzyme system immobilised on sensor surface. → Logic gates were activated by different combinations of chemical inputs (analytes). → The logic output (pH change) produced by the enzymes was read out by the sensor. - Abstract: The integration of biomolecular logic gates with field-effect devices - the basic element of conventional electronic logic gates and computing - is one of the most attractive and promising approaches for the transformation of biomolecular logic principles into macroscopically useable electrical output signals. In this work, capacitive field-effect EIS (electrolyte-insulator-semiconductor) sensors based on a p-Si-SiO 2 -Ta 2 O 5 structure modified with a multi-enzyme membrane have been used for electronic transduction of biochemical signals processed by enzyme-based OR and AND logic gates. The realised OR logic gate composes of two enzymes (glucose oxidase and esterase) and was activated by ethyl butyrate or/and glucose. The AND logic gate composes of three enzymes (invertase, mutarotase and glucose oxidase) and was activated by two chemical input signals: sucrose and dissolved oxygen. The developed integrated enzyme logic gates produce local pH changes at the EIS sensor surface as a result of biochemical reactions activated by different combinations of chemical input signals, while the pH value of the bulk solution remains unchanged. The pH-induced charge changes at the gate-insulator (Ta 2 O 5 ) surface of the EIS transducer result in an electronic signal corresponding to the logic output produced by the immobilised enzymes. The logic output signals have been read out by means of a constant-capacitance method.

  3. Integration of biomolecular logic gates with field-effect transducers

    Energy Technology Data Exchange (ETDEWEB)

    Poghossian, A., E-mail: a.poghossian@fz-juelich.de [Institute of Nano- and Biotechnologies, Aachen University of Applied Sciences, Campus Juelich, Heinrich-Mussmann-Str. 1, D-52428 Juelich (Germany); Institute of Bio- and Nanosystems, Research Centre Juelich GmbH, D-52425 Juelich (Germany); Malzahn, K. [Institute of Nano- and Biotechnologies, Aachen University of Applied Sciences, Campus Juelich, Heinrich-Mussmann-Str. 1, D-52428 Juelich (Germany); Abouzar, M.H. [Institute of Nano- and Biotechnologies, Aachen University of Applied Sciences, Campus Juelich, Heinrich-Mussmann-Str. 1, D-52428 Juelich (Germany); Institute of Bio- and Nanosystems, Research Centre Juelich GmbH, D-52425 Juelich (Germany); Mehndiratta, P. [Institute of Nano- and Biotechnologies, Aachen University of Applied Sciences, Campus Juelich, Heinrich-Mussmann-Str. 1, D-52428 Juelich (Germany); Katz, E. [Department of Chemistry and Biomolecular Science, NanoBio Laboratory (NABLAB), Clarkson University, Potsdam, NY 13699-5810 (United States); Schoening, M.J. [Institute of Nano- and Biotechnologies, Aachen University of Applied Sciences, Campus Juelich, Heinrich-Mussmann-Str. 1, D-52428 Juelich (Germany); Institute of Bio- and Nanosystems, Research Centre Juelich GmbH, D-52425 Juelich (Germany)

    2011-11-01

    Highlights: > Enzyme-based AND/OR logic gates are integrated with a capacitive field-effect sensor. > The AND/OR logic gates compose of multi-enzyme system immobilised on sensor surface. > Logic gates were activated by different combinations of chemical inputs (analytes). > The logic output (pH change) produced by the enzymes was read out by the sensor. - Abstract: The integration of biomolecular logic gates with field-effect devices - the basic element of conventional electronic logic gates and computing - is one of the most attractive and promising approaches for the transformation of biomolecular logic principles into macroscopically useable electrical output signals. In this work, capacitive field-effect EIS (electrolyte-insulator-semiconductor) sensors based on a p-Si-SiO{sub 2}-Ta{sub 2}O{sub 5} structure modified with a multi-enzyme membrane have been used for electronic transduction of biochemical signals processed by enzyme-based OR and AND logic gates. The realised OR logic gate composes of two enzymes (glucose oxidase and esterase) and was activated by ethyl butyrate or/and glucose. The AND logic gate composes of three enzymes (invertase, mutarotase and glucose oxidase) and was activated by two chemical input signals: sucrose and dissolved oxygen. The developed integrated enzyme logic gates produce local pH changes at the EIS sensor surface as a result of biochemical reactions activated by different combinations of chemical input signals, while the pH value of the bulk solution remains unchanged. The pH-induced charge changes at the gate-insulator (Ta{sub 2}O{sub 5}) surface of the EIS transducer result in an electronic signal corresponding to the logic output produced by the immobilised enzymes. The logic output signals have been read out by means of a constant-capacitance method.

  4. The biomolecular corona of nanoparticles in circulating biological media

    Science.gov (United States)

    Pozzi, D.; Caracciolo, G.; Digiacomo, L.; Colapicchioni, V.; Palchetti, S.; Capriotti, A. L.; Cavaliere, C.; Zenezini Chiozzi, R.; Puglisi, A.; Laganà, A.

    2015-08-01

    When nanoparticles come into contact with biological media, they are covered by a biomolecular `corona', which confers a new identity to the particles. In all the studies reported so far nanoparticles are incubated with isolated plasma or serum that are used as a model for protein adsorption. Anyway, bodily fluids are dynamic in nature so the question arises on whether the incubation protocol, i.e. dynamic vs. static incubation, could affect the composition and structure of the biomolecular corona. Here we let multicomponent liposomes interact with fetal bovine serum (FBS) both statically and dynamically, i.e. in contact with circulating FBS (~40 cm s-1). The structure and composition of the liposome-protein corona, as determined by dynamic light scattering, electrophoretic light scattering and liquid chromatography tandem mass spectrometry, were found to be dependent on the incubation protocol. Specifically, following dynamic exposure to FBS, multicomponent liposomes were less enriched in complement proteins and appreciably more enriched in apolipoproteins and acute phase proteins (e.g. alpha-1-antitrypsin and inter-alpha-trypsin inhibitor heavy chain H3) that are involved in relevant interactions between nanoparticles and living systems. Supported by our results, we speculate that efficient predictive modeling of nanoparticle behavior in vivo will require accurate knowledge of nanoparticle-specific protein fingerprints in circulating biological media.When nanoparticles come into contact with biological media, they are covered by a biomolecular `corona', which confers a new identity to the particles. In all the studies reported so far nanoparticles are incubated with isolated plasma or serum that are used as a model for protein adsorption. Anyway, bodily fluids are dynamic in nature so the question arises on whether the incubation protocol, i.e. dynamic vs. static incubation, could affect the composition and structure of the biomolecular corona. Here we let

  5. Role of Information Anxiety and Information Load on Processing of Prescription Drug Information Leaflets.

    Science.gov (United States)

    Bapat, Shweta S; Patel, Harshali K; Sansgiry, Sujit S

    2017-10-16

    In this study, we evaluate the role of information anxiety and information load on the intention to read information from prescription drug information leaflets (PILs). These PILs were developed based on the principals of information load and consumer information processing. This was an experimental prospective repeated measures study conducted in the United States where 360 (62% response rate) university students (>18 years old) participated. Participants were presented with a scenario followed by exposure to the three drug product information sources used to operationalize information load. The three sources were: (i) current practice; (ii) pre-existing one-page text only; and (iii) interventional one-page prototype PILs designed for the study. Information anxiety was measured as anxiety experienced by the individual when encountering information. The outcome variable of intention to read PILs was defined as the likelihood that the patient will read the information provided in the leaflets. A survey questionnaire was used to capture the data and the objectives were analyzed by performing a repeated measures MANOVA using SAS version 9.3. When compared to current practice and one-page text only leaflets, one-page PILs had significantly lower scores on information anxiety ( p information load ( p Information anxiety and information load significantly impacted intention to read ( p < 0.001). Newly developed PILs increased patient's intention to read and can help in improving the counseling services provided by pharmacists.

  6. Theory of Neural Information Processing Systems

    International Nuclear Information System (INIS)

    Galla, Tobias

    2006-01-01

    It is difficult not to be amazed by the ability of the human brain to process, to structure and to memorize information. Even by the toughest standards the behaviour of this network of about 10 11 neurons qualifies as complex, and both the scientific community and the public take great interest in the growing field of neuroscience. The scientific endeavour to learn more about the function of the brain as an information processing system is here a truly interdisciplinary one, with important contributions from biology, computer science, physics, engineering and mathematics as the authors quite rightly point out in the introduction of their book. The role of the theoretical disciplines here is to provide mathematical models of information processing systems and the tools to study them. These models and tools are at the centre of the material covered in the book by Coolen, Kuehn and Sollich. The book is divided into five parts, providing basic introductory material on neural network models as well as the details of advanced techniques to study them. A mathematical appendix complements the main text. The range of topics is extremely broad, still the presentation is concise and the book well arranged. To stress the breadth of the book let me just mention a few keywords here: the material ranges from the basics of perceptrons and recurrent network architectures to more advanced aspects such as Bayesian learning and support vector machines; Shannon's theory of information and the definition of entropy are discussed, and a chapter on Amari's information geometry is not missing either. Finally the statistical mechanics chapters cover Gardner theory and the replica analysis of the Hopfield model, not without being preceded by a brief introduction of the basic concepts of equilibrium statistical physics. The book also contains a part on effective theories of the macroscopic dynamics of neural networks. Many dynamical aspects of neural networks are usually hard to find in the

  7. Quantum Information Processing using Nonlinear Optical Effects

    DEFF Research Database (Denmark)

    Andersen, Lasse Mejling

    This PhD thesis treats applications of nonlinear optical effects for quantum information processing. The two main applications are four-wave mixing in the form of Bragg scattering (BS) for quantum-state-preserving frequency conversion, and sum-frequency generation (SFG) in second-order nonlinear...... materials for heralded entanglement. BS is shown to be separable in the input and output modes in the low-conversion regime, the regime of small pump powers or short interaction times. The selective frequency conversion of a signal is found to only depend on one of the pumps, while the temporal output...... shifts of the input and output modes, corresponding to shifts of the central frequencies of the fields. The trade-off is that one is only able to select which signals are converted, or change the shape of the output idler. Finally, entanglement swapping using SFG was investigated. Considering two pairs...

  8. Quantum information processing with optical vortices

    Energy Technology Data Exchange (ETDEWEB)

    Khoury, Antonio Z. [Universidade Federal Fluminense (UFF), Niteroi, RJ (Brazil)

    2012-07-01

    Full text: In this work we discuss several proposals for quantum information processing using the transverse structure of paraxial beams. Different techniques for production and manipulation of optical vortices have been employed and combined with polarization transformations in order to investigate fundamental properties of quantum entanglement as well as to propose new tools for quantum information processing. As an example, we have recently proposed and demonstrated a controlled NOT (CNOT) gate based on a Michelson interferometer in which the photon polarization is the control bit and the first order transverse mode is the target. The device is based on a single lens design for an astigmatic mode converter that transforms the transverse mode of paraxial optical beams. In analogy with Bell's inequality for two-qubit quantum states, we propose an inequality criterion for the non-separability of the spin-orbit degrees of freedom of a laser beam. A definition of separable and non-separable spin-orbit modes is used in consonance with the one presented in Phys. Rev. Lett. 99, 2007. As the usual Bell's inequality can be violated for entangled two-qubit quantum states, we show both theoretically and experimentally that the proposed spin-orbit inequality criterion can be violated for non-separable modes. The inequality is discussed both in the classical and quantum domains. We propose a polarization to orbital angular momentum teleportation scheme using entangled photon pairs generated by spontaneous parametric down conversion. By making a joint detection of the polarization and angular momentum parity of a single photon, we are able to detect all the Bell-states and perform, in principle, perfect teleportation from a discrete to a continuous system using minimal resources. The proposed protocol implementation demands experimental resources that are currently available in quantum optics laboratories. (author)

  9. Information Support of Processes in Warehouse Logistics

    Directory of Open Access Journals (Sweden)

    Gordei Kirill

    2013-11-01

    Full Text Available In the conditions of globalization and the world economic communications, the role of information support of business processes increases in various branches and fields of activity. There is not an exception for the warehouse activity. Such information support is realized in warehouse logistic systems. In relation to territorial administratively education, the warehouse logistic system gets a format of difficult social and economic structure which controls the economic streams covering the intermediary, trade and transport organizations and the enterprises of other branches and spheres. Spatial movement of inventory items makes new demands to participants of merchandising. Warehousing (in the meaning – storage – is one of the operations entering into logistic activity, on the organization of a material stream, as a requirement. Therefore, warehousing as "management of spatial movement of stocks" – is justified. Warehousing, in such understanding, tries to get rid of the perception as to containing stocks – a business expensive. This aspiration finds reflection in the logistic systems working by the principle: "just in time", "economical production" and others. Therefore, the role of warehouses as places of storage is transformed to understanding of warehousing as an innovative logistic system.

  10. Micro- and nanodevices integrated with biomolecular probes.

    Science.gov (United States)

    Alapan, Yunus; Icoz, Kutay; Gurkan, Umut A

    2015-12-01

    Understanding how biomolecules, proteins and cells interact with their surroundings and other biological entities has become the fundamental design criterion for most biomedical micro- and nanodevices. Advances in biology, medicine, and nanofabrication technologies complement each other and allow us to engineer new tools based on biomolecules utilized as probes. Engineered micro/nanosystems and biomolecules in nature have remarkably robust compatibility in terms of function, size, and physical properties. This article presents the state of the art in micro- and nanoscale devices designed and fabricated with biomolecular probes as their vital constituents. General design and fabrication concepts are presented and three major platform technologies are highlighted: microcantilevers, micro/nanopillars, and microfluidics. Overview of each technology, typical fabrication details, and application areas are presented by emphasizing significant achievements, current challenges, and future opportunities. Copyright © 2015 Elsevier Inc. All rights reserved.

  11. An optics-based variable-temperature assay system for characterizing thermodynamics of biomolecular reactions on solid support

    Energy Technology Data Exchange (ETDEWEB)

    Fei, Yiyan; Landry, James P.; Zhu, X. D., E-mail: xdzhu@physics.ucdavis.edu [Department of Physics, University of California, One Shields Avenue, Davis, California 95616 (United States); Li, Yanhong; Yu, Hai; Lau, Kam; Huang, Shengshu; Chokhawala, Harshal A.; Chen, Xi [Department of Chemistry, University of California, One Shields Avenue, Davis, California 95616 (United States)

    2013-11-15

    A biological state is equilibrium of multiple concurrent biomolecular reactions. The relative importance of these reactions depends on physiological temperature typically between 10 °C and 50 °C. Experimentally the temperature dependence of binding reaction constants reveals thermodynamics and thus details of these biomolecular processes. We developed a variable-temperature opto-fluidic system for real-time measurement of multiple (400–10 000) biomolecular binding reactions on solid supports from 10 °C to 60 °C within ±0.1 °C. We illustrate the performance of this system with investigation of binding reactions of plant lectins (carbohydrate-binding proteins) with 24 synthetic glycans (i.e., carbohydrates). We found that the lectin-glycan reactions in general can be enthalpy-driven, entropy-driven, or both, and water molecules play critical roles in the thermodynamics of these reactions.

  12. A STUDY ON IMPROVING INFORMATION PROCESSING ABILITIES BASED ON PBL

    Directory of Open Access Journals (Sweden)

    Du Gyu KIM,

    2014-04-01

    Full Text Available This study examined an instruction method for the improvement of information processing abilities in elementary school students. Current elementary students are required to develop information processing abilities to create new knowledge for this digital age. There is, however, a shortage of instruction strategies for these information processing abilities. This research proposes a method for teaching information processing abilities based on a problem-based learning model, and was tested with elementary students. The students developed an improved ability to create new knowledge and to present relationships with information through the process of problem solving. This study performed experimental research by comparing pre- and post-tests with twenty-three fifth grade elementary students over the course of eight months. This study produced a remarkable improvement in information selection, information reliability, information classification, information analysis, information comparison, and information internalization. This study presents an improved methodology for the teaching of information processing abilities.

  13. Modeling, Analysis, Simulation, and Synthesis of Biomolecular Networks

    National Research Council Canada - National Science Library

    Ruben, Harvey; Kumar, Vijay; Sokolsky, Oleg

    2006-01-01

    ...) a first example of reachability analysis applied to a biomolecular system (lactose induction), 4) a model of tetracycline resistance that discriminates between two possible mechanisms for tetracycline diffusion through the cell membrane, and 5...

  14. Acquisition of Computers That Process Corporate Information

    National Research Council Canada - National Science Library

    Gimble, Thomas

    1999-01-01

    The Secretary of Defense announced the Corporate Information Management initiative on November 16, 1990, to establish a DoD-wide concept for managing computer, communications, and information management functions...

  15. Development of technical information processing system (VII)

    International Nuclear Information System (INIS)

    Kim, Tae Whan; Choi, Kwang; Oh, Jeong Hoon; Jeong, Hyun Sook; Keum, Jong Yong

    1995-12-01

    The goal of this project is to establish integrated environment focused on enhanced information services to researchers through the providing of acquisition information, key phrase retrieval function, journal content information linked with various subsystems already developed. The results of the project are as follows. 1. It is possible to serve information on unreceivable materials among required materials throughout the system. 2. Retrieval efficiency is increased by the adding of key phrase retrieval function. 3. Rapidity of information service is enhanced by the providing of journal contents of each issue received and work performance of contents service is become higher. 4. It is possible to acquire, store, serve technical information needed in R and D synthetically and systematically throughout the development of total system linked with various subsystems required to technical information management and service. 21 refs. (Author)

  16. NEA, Nuclear law and information processing

    International Nuclear Information System (INIS)

    Reyners, P.

    1977-01-01

    NEA has for many years now been collating information on, and analysing, laws and regulations on the peaceful uses of nuclear energy, and this work has resulted in a series of publications. However, as seen by the multiplication of computer-based legal information centres, both at national and international level, conventional information systems are no longer adequate to deal with the increasing volume of information and with users' needs. In view of the particular aspects of nuclear law and of its own availabilities, NEA has endeavoured to make the best possible use of existing structures by opting for participation in the IAEA International Nuclear Information System rather than by creating a specialised centre. Before becoming operational, the arrangements concluded between NEA and IAEA required that the INIS rules be altered somewhat to take account of the specific problems raised by treatment of legal literature and also to improve the quality of information provided to users. (auth.) [fr

  17. Analytic Hierarchy Process for Personalising Environmental Information

    Science.gov (United States)

    Kabassi, Katerina

    2014-01-01

    This paper presents how a Geographical Information System (GIS) can be incorporated in an intelligent learning software system for environmental matters. The system is called ALGIS and incorporates the GIS in order to present effectively information about the physical and anthropogenic environment of Greece in a more interactive way. The system…

  18. Essays on Imperfect Information Processing in Economics

    NARCIS (Netherlands)

    S.S. Ficco (Stefano)

    2007-01-01

    textabstractEconomic agents generally operate in uncertain environments and, prior to making decisions, invest time and resources to collect useful information. Consumers compare the prices charged by di..erent firms before purchasing a product. Politicians gather information from di..erent

  19. Process control using modern systems of information processing

    International Nuclear Information System (INIS)

    Baldeweg, F.

    1984-01-01

    Modern digital automation techniques allow the application of demanding types of process control. These types of process control are characterized by their belonging to higher levels in a multilevel model. Functional and technical aspects of the performance of digital automation plants are presented and explained. A modern automation system is described considering special procedures of process control (e.g. real time diagnosis)

  20. Spectroscopy of mobility-selected biomolecular ions.

    Science.gov (United States)

    Papadopoulos, Georgios; Svendsen, Annette; Boyarkin, Oleg V; Rizzo, Thomas R

    2011-01-01

    We describe here experiments that combine differential ion mobility, which separates conformational isomers of biomolecular ions, with electronic spectroscopy in a cold, radio-frequency ion trap. Although the low temperature attainable in a cold ion trap greatly simplifies the electronic spectra of large molecules, conformational heterogeneity can still be a significant source of congestion, complicating spectroscopic analysis. We demonstrate here that using differential ion mobility to separate gas-phase peptide conformers before injecting them into a cold ion trap allows one to decompose a dense spectrum into contributions from different conformational families. In the inverse sense, cold ion spectroscopy can be used as a conformation-specific detector for ion mobility, allowing one to separate an unresolved peak into contributions from different conformational families. The doubly protonated peptide bradykinin serves as a good test case for the marriage of these two techniques as it exhibits a considerable degree of conformational heterogeneity that results in a highly congested electronic spectrum. Our results demonstrate the feasibility and advantages of directly coupling ion mobility with spectroscopy and provide a diagnostic of conformational isomerization of this peptide after being produced in the gas phase by electrospray.

  1. A multiscale modeling approach for biomolecular systems

    Energy Technology Data Exchange (ETDEWEB)

    Bowling, Alan, E-mail: bowling@uta.edu; Haghshenas-Jaryani, Mahdi, E-mail: mahdi.haghshenasjaryani@mavs.uta.edu [The University of Texas at Arlington, Department of Mechanical and Aerospace Engineering (United States)

    2015-04-15

    This paper presents a new multiscale molecular dynamic model for investigating the effects of external interactions, such as contact and impact, during stepping and docking of motor proteins and other biomolecular systems. The model retains the mass properties ensuring that the result satisfies Newton’s second law. This idea is presented using a simple particle model to facilitate discussion of the rigid body model; however, the particle model does provide insights into particle dynamics at the nanoscale. The resulting three-dimensional model predicts a significant decrease in the effect of the random forces associated with Brownian motion. This conclusion runs contrary to the widely accepted notion that the motor protein’s movements are primarily the result of thermal effects. This work focuses on the mechanical aspects of protein locomotion; the effect ATP hydrolysis is estimated as internal forces acting on the mechanical model. In addition, the proposed model can be numerically integrated in a reasonable amount of time. Herein, the differences between the motion predicted by the old and new modeling approaches are compared using a simplified model of myosin V.

  2. MSMBuilder: Statistical Models for Biomolecular Dynamics.

    Science.gov (United States)

    Harrigan, Matthew P; Sultan, Mohammad M; Hernández, Carlos X; Husic, Brooke E; Eastman, Peter; Schwantes, Christian R; Beauchamp, Kyle A; McGibbon, Robert T; Pande, Vijay S

    2017-01-10

    MSMBuilder is a software package for building statistical models of high-dimensional time-series data. It is designed with a particular focus on the analysis of atomistic simulations of biomolecular dynamics such as protein folding and conformational change. MSMBuilder is named for its ability to construct Markov state models (MSMs), a class of models that has gained favor among computational biophysicists. In addition to both well-established and newer MSM methods, the package includes complementary algorithms for understanding time-series data such as hidden Markov models and time-structure based independent component analysis. MSMBuilder boasts an easy to use command-line interface, as well as clear and consistent abstractions through its Python application programming interface. MSMBuilder was developed with careful consideration for compatibility with the broader machine learning community by following the design of scikit-learn. The package is used primarily by practitioners of molecular dynamics, but is just as applicable to other computational or experimental time-series measurements. Copyright © 2017 Biophysical Society. Published by Elsevier Inc. All rights reserved.

  3. An Information-Processing Model of Crisis Management.

    Science.gov (United States)

    Egelhoff, William G.; Sen, Falguni

    1992-01-01

    Develops a contingency model for managing a variety of corporate crises. Views crisis management as an information-processing situation and organizations that must cope with crisis as information-processing systems. Attempts to fit appropriate information-processing mechanisms to different categories of crises. (PRA)

  4. PUBLIC RELATIONS AS AN INFORMATION PROCESS PHENOMENON

    Directory of Open Access Journals (Sweden)

    TKACH L. M.

    2016-06-01

    Full Text Available Formulation of the problem. If public relations as a phenomenon of information management are examined, we deal with the question of knowledge content and nature of relationship of PR with environment, ability to manage the perception and attitude of people to events in the environment; ensure priority of information over other resources. Goal. To investigate the concept of "public relations" of foreign and domestic experts; consider the typology of the public and the "laws" of public opinion; define the basic principles according to which relations with public should be built, and to identify PR activities as a kind of social communication. Conclusions. Public relations on the basis of advanced information and communication technologies create fundamentally new opportunities for information control and influence on public consciousness.

  5. Extending Conceptual Schemas with Business Process Information

    Directory of Open Access Journals (Sweden)

    Marco Brambilla

    2010-01-01

    Full Text Available The specification of business processes is becoming a more and more critical aspect for organizations. Such processes are specified as workflow models expressing the logical precedence among the different business activities (i.e., the units of work. Typically, workflow models are managed through specific subsystems, called workflow management systems, to ensure a consistent behavior of the applications with respect to the organization business process. However, for small organizations and/or simple business processes, the complexity and capabilities of these dedicated workflow engines may be overwhelming. In this paper, we therefore, advocate for a different and lightweight approach, consisting in the integration of the business process specification within the system conceptual schema. We show how a workflow-extended conceptual schema can be automatically obtained, which serves both to enforce the organization business process and to manage all its relevant domain data in a unified way. This extended model can be directly processed with current CASE tools, for instance, to generate an implementation of the system (including its business process in any technological platform.

  6. SUPPLEMENTARY INFORMATION A sustainable process for gram ...

    Indian Academy of Sciences (India)

    welcome

    Figure S1: Gram-scale process for the preparation of compound 2h; a) initial stage of the reaction b) end of the reaction c) separation of product from the reaction mixture d) precipitated form of the product e) manual filtration process f) final product ...

  7. Markovian Processes for Quantitative Information Leakage

    DEFF Research Database (Denmark)

    Biondi, Fabrizio

    Quantification of information leakage is a successful approach for evaluating the security of a system. It models the system to be analyzed as a channel with the secret as the input and an output as observable by the attacker as the output, and applies information theory to quantify the amount...... of information transmitted through such channel, thus effectively quantifying how many bits of the secret can be inferred by the attacker by analyzing the system’s output. Channels are usually encoded as matrices of conditional probabilities, known as channel matrices. Such matrices grow exponentially...... in the size of the secret and observables, are cumbersome to compute and store, encode both the behavior of the system and assumptions about the attacker, and assume an input-output behavior of the system. For these reasons we propose to model the systemattacker scenario with Markovian models. We show...

  8. Development of technical information processing systems

    International Nuclear Information System (INIS)

    Lee, Ji Ho; Kim, Tae Whan; Kim, Sun Ja; Kim, Young Min; Choi, Kwang; Oh, Joung Hun; Choung, Hyun Suk; Keum, Jong Yong; Yoo, An Na; Harn, Deuck Haing; Choun, Young Chun

    1993-12-01

    The major goal of this project is to develop a more efficient information management system by connecting the KAREI serials database which enable the users to access from their own laboratory facilities through KAREI-NET. The importance of this project is to make the serials information of KAERI easily accessible to users as valuable resources for R and D activities. The results of the project are as follows. 1) Development of the serials database and retrieval system enabled us to access to the serials holding information through KAERI-NET. 2) The database construction establishes a foundation for the management of 1,600 serials held in KAERI. 3) The system can be applied not only to KAERI but also to similar medium-level libraries. (Author)

  9. Acetylcholine molecular arrays enable quantum information processing

    Science.gov (United States)

    Tamulis, Arvydas; Majauskaite, Kristina; Talaikis, Martynas; Zborowski, Krzysztof; Kairys, Visvaldas

    2017-09-01

    We have found self-assembly of four neurotransmitter acetylcholine (ACh) molecular complexes in a water molecules environment by using geometry optimization with DFT B97d method. These complexes organizes to regular arrays of ACh molecules possessing electronic spins, i.e. quantum information bits. These spin arrays could potentially be controlled by the application of a non-uniform external magnetic field. The proper sequence of resonant electromagnetic pulses would then drive all the spin groups into the 3-spin entangled state and proceed large scale quantum information bits.

  10. Internet-based intelligent information processing systems

    CERN Document Server

    Tonfoni, G; Ichalkaranje, N S

    2003-01-01

    The Internet/WWW has made it possible to easily access quantities of information never available before. However, both the amount of information and the variation in quality pose obstacles to the efficient use of the medium. Artificial intelligence techniques can be useful tools in this context. Intelligent systems can be applied to searching the Internet and data-mining, interpreting Internet-derived material, the human-Web interface, remote condition monitoring and many other areas. This volume presents the latest research on the interaction between intelligent systems (neural networks, adap

  11. Processing data base information having nonwhite noise

    Science.gov (United States)

    Gross, Kenneth C.; Morreale, Patricia

    1995-01-01

    A method and system for processing a set of data from an industrial process and/or a sensor. The method and system can include processing data from either real or calculated data related to an industrial process variable. One of the data sets can be an artificial signal data set generated by an autoregressive moving average technique. After obtaining two data sets associated with one physical variable, a difference function data set is obtained by determining the arithmetic difference between the two pairs of data sets over time. A frequency domain transformation is made of the difference function data set to obtain Fourier modes describing a composite function data set. A residual function data set is obtained by subtracting the composite function data set from the difference function data set and the residual function data set (free of nonwhite noise) is analyzed by a statistical probability ratio test to provide a validated data base.

  12. Testing quantum dynamics in genetic information processing

    Indian Academy of Sciences (India)

    Unknown

    genetic information is organized in a base-4 language, and not in the base-2 language of our classical digital com- puters (Patel 2000b). My study of the molecular structure of DNA showed that .... In reality, the quantum algorithm is unlikely to work with 100% efficiency. Disturbances from the environ- ment, i.e. decoherence ...

  13. Spin valve sensor for biomolecular identification: Design, fabrication, and characterization

    Science.gov (United States)

    Li, Guanxiong

    Biomolecular identification, e.g., DNA recognition, has broad applications in biology and medicine such as gene expression analysis, disease diagnosis, and DNA fingerprinting. Therefore, we have been developing a magnetic biodetection technology based on giant magnetoresistive spin valve sensors and magnetic nanoparticle (developed for the magnetic nanoparticle detection, assuming the equivalent average field of magnetic nanoparticles and the coherent rotation of spin valve free layer magnetization. Micromagnetic simulations have also been performed for the spin valve sensors. The analytical model and micromagnetic simulations are found consistent with each other and are in good agreement with experiments. The prototype spin valve sensors have been fabricated at both micron and submicron scales. We demonstrated the detection of a single 2.8-mum magnetic microbead by micron-sized spin valve sensors. Based on polymer-mediated self-assembly and fine lithography, a bilayer lift-off process was developed to deposit magnetic nanoparticles onto the sensor surface in a controlled manner. With the lift-off deposition method, we have successfully demonstrated the room temperature detection of monodisperse 16-nm Fe3O 4 nanoparticles in a quantity from a few tens to several hundreds by submicron spin valve sensors, proving the feasibility of the nanoparticle detection. As desired for quantitative biodetection, a fairly linear dependence of sensor signal on the number of nanoparticles has been confirmed. The initial detection of DNA hybridization events labeled by magnetic nanoparticles further proved the magnetic biodetection concept.

  14. Biomolecular Modification of Inorganic Crystal Growth

    Energy Technology Data Exchange (ETDEWEB)

    De Yoreo, J J

    2007-04-27

    The fascinating shapes and hierarchical designs of biomineralized structures are an inspiration to materials scientists because of the potential they suggest for biomolecular control over materials synthesis. Conversely, the failure to prevent or limit tissue mineralization in the vascular, skeletal, and urinary systems is a common source of disease. Understanding the mechanisms by which organisms direct or limit crystallization has long been a central challenge to the biomineralization community. One prevailing view is that mineral-associated macromolecules are responsible for either inhibiting crystallization or initiating and stabilizing non-equilibrium crystal polymorphs and morphologies through interactions between anionic moieties and cations in solution or at mineralizing surfaces. In particular, biomolecules that present carboxyl groups to the growing crystal have been implicated as primary modulators of growth. Here we review the results from a combination of in situ atomic force microscopy (AFM) and molecular modeling (MM) studies to investigate the effect of specific interactions between carboxylate-rich biomolecules and atomic steps on crystal surfaces during the growth of carbonates, oxalates and phosphates of calcium. Specifically, we how the growth kinetics and morphology depend on the concentration of additives that include citrate, simple amino acids, synthetic Asp-rich polypeptides, and naturally occurring Asp-rich proteins found in both functional and pathological mineral tissues. The results reveal a consistent picture of shape modification in which stereochemical matching of modifiers to specific atomic steps drives shape modification. Inhibition and other changes in growth kinetics are shown to be due to a range of mechanisms that depend on chemistry and molecular size. Some effects are well described by classic crystal growth theories, but others, such as step acceleration due to peptide charge and hydrophylicity, were previously unrealized

  15. Microfluidic Devices for Studying Biomolecular Interactions

    Science.gov (United States)

    Wilson, Wilbur W.; Garcia, Carlos d.; Henry, Charles S.

    2006-01-01

    Microfluidic devices for monitoring biomolecular interactions have been invented. These devices are basically highly miniaturized liquid-chromatography columns. They are intended to be prototypes of miniature analytical devices of the laboratory on a chip type that could be fabricated rapidly and inexpensively and that, because of their small sizes, would yield analytical results from very small amounts of expensive analytes (typically, proteins). Other advantages to be gained by this scaling down of liquid-chromatography columns may include increases in resolution and speed, decreases in the consumption of reagents, and the possibility of performing multiple simultaneous and highly integrated analyses by use of multiple devices of this type, each possibly containing multiple parallel analytical microchannels. The principle of operation is the same as that of a macroscopic liquid-chromatography column: The column is a channel packed with particles, upon which are immobilized molecules of the protein of interest (or one of the proteins of interest if there are more than one). Starting at a known time, a solution or suspension containing molecules of the protein or other substance of interest is pumped into the channel at its inlet. The liquid emerging from the outlet of the channel is monitored to detect the molecules of the dissolved or suspended substance(s). The time that it takes these molecules to flow from the inlet to the outlet is a measure of the degree of interaction between the immobilized and the dissolved or suspended molecules. Depending on the precise natures of the molecules, this measure can be used for diverse purposes: examples include screening for solution conditions that favor crystallization of proteins, screening for interactions between drugs and proteins, and determining the functions of biomolecules.

  16. Information interfaces for process plant diagnosis

    International Nuclear Information System (INIS)

    Lind, M.

    1984-02-01

    The paper describes a systematic approach to the design of information interfaces for operator support in diagnosing complex systems faults. The need of interpreting primary measured plant variables within the framework of different system representations organized into an abstraction hierarchy is identified from an analysis of the problem of diagnosing complex systems. A formalized approach to the modelling of production systems, called Multilevel Flow Modelling, is described. A MFM model specifies plant control requirements and the associated need for plant information and provide a consistent context for the interpretation of real time plant signals in diagnosis of malfunctions. The use of MFM models as a basis for functional design of the plant instrumentation system is outlined, and the use of knowledge Based (Expert) Systems for the design of man-machine interfaces is mentioned. Such systems would allow an active user participation in diagnosis and thus provide the basis for cooperative problem solving. 14 refs. (author)

  17. Hidden Information In Early Visual Processing

    Science.gov (United States)

    Nishihara, H. K.

    1983-05-01

    A definition of scale-specific structure follows from the work of Marr and Poggio on zero-crossings in gaussian-bandpass-filtered images. This paper presents several examples which illustrate the potential value of scale-specific structure for recognition, inspection, and correspondence related tasks. The suitability of the approach for practical systems is discussed, and a recent result suggesting the importance of this "hidden" information to human stereo vision is presented.

  18. Bayesian Modeling of Cerebral Information Processing

    OpenAIRE

    Labatut, Vincent; Pastor, Josette

    2001-01-01

    International audience; Modeling explicitly the links between cognitive functions and networks of cerebral areas is necessitated both by the understanding of the clinical outcomes of brain lesions and by the interpretation of activation data provided by functional neuroimaging techniques. At this global level of representation, the human brain can be best modeled by a probabilistic functional causal network. Our modeling approach is based on the anatomical connection pattern, the information ...

  19. Monitoring process variability using auxiliary information

    NARCIS (Netherlands)

    Riaz, M.

    2008-01-01

    In this study a Shewhart type control chart namely V (r) chart is proposed for improved monitoring of process variability (targeting large shifts) of a quality characteristic of interest Y. The proposed control chart is based on regression type estimator of variance using a single auxiliary variable

  20. Monitoring process mean level using auxiliary information

    NARCIS (Netherlands)

    Riaz, M.

    2008-01-01

    In this study, a Shewhart-type control chart is proposed for the improved monitoring of process mean level (targeting both moderate and large shifts which is the major concern of Shewhart-type control charts) of a quality characteristic of interest Y. The proposed control chart, namely the M-r

  1. A Study on Improving Information Processing Abilities Based on PBL

    Science.gov (United States)

    Kim, Du Gyu; Lee, JaeMu

    2014-01-01

    This study examined an instruction method for the improvement of information processing abilities in elementary school students. Current elementary students are required to develop information processing abilities to create new knowledge for this digital age. There is, however, a shortage of instruction strategies for these information processing…

  2. Information paths within the new product development process

    DEFF Research Database (Denmark)

    Jespersen, Kristina Risom

    2007-01-01

    The present study explores the information acquisition within the new product development process (NPD). The effect of the front-end and environmental turbulence on the inter-stage connectedness of information within the NPD process is examined. An agent-based simulation is applied as the data...... collection platform to obtain measurements from within the NPD process. 42 large, international companies participated in the data collecting simulation. Results revealed five different information paths that were not connecting all stages of the NPD process. Moreover, results show that the front......-end is not driving the information acquisition through the stages of the NPD process, and that environmental turbulence disconnects stages from the information paths in the NPD process. This implies that information is at the same time a key to success and a key to entrapment in the NPD process....

  3. Electrochemical sensor for multiplex screening of genetically modified DNA: identification of biotech crops by logic-based biomolecular analysis.

    Science.gov (United States)

    Liao, Wei-Ching; Chuang, Min-Chieh; Ho, Ja-An Annie

    2013-12-15

    Genetically modified (GM) technique, one of the modern biomolecular engineering technologies, has been deemed as profitable strategy to fight against global starvation. Yet rapid and reliable analytical method is deficient to evaluate the quality and potential risk of such resulting GM products. We herein present a biomolecular analytical system constructed with distinct biochemical activities to expedite the computational detection of genetically modified organisms (GMOs). The computational mechanism provides an alternative to the complex procedures commonly involved in the screening of GMOs. Given that the bioanalytical system is capable of processing promoter, coding and species genes, affirmative interpretations succeed to identify specified GM event in terms of both electrochemical and optical fashions. The biomolecular computational assay exhibits detection capability of genetically modified DNA below sub-nanomolar level and is found interference-free by abundant coexistence of non-GM DNA. This bioanalytical system, furthermore, sophisticates in array fashion operating multiplex screening against variable GM events. Such a biomolecular computational assay and biosensor holds great promise for rapid, cost-effective, and high-fidelity screening of GMO. Copyright © 2013 Elsevier B.V. All rights reserved.

  4. Environmental information document defense waste processing facility

    International Nuclear Information System (INIS)

    1981-07-01

    This report documents the impact analysis of a proposed Defense Waste Processing Facility (DWPF) for immobilizing high-level waste currently being stored on an interim basis at the Savannah River Plant (SRP). The DWPF will process the waste into a form suitable for shipment to and disposal in a federal repository. The DWPF will convert the high-level waste into: a leach-resistant form containing above 99.9% of all the radioactivity, and a residue of slightly contaminated salt. The document describes the SRP site and environs, including population, land and water uses; surface and subsurface soils and waters; meteorology; and ecology. A conceptual integrated facility for concurrently producing glass waste and saltcrete is described, and the environmental effects of constructing and operating the facility are presented. Alternative sites and waste disposal options are addressed. Also environmental consultations and permits are discussed

  5. Default mode contributions to automated information processing.

    Science.gov (United States)

    Vatansever, Deniz; Menon, David K; Stamatakis, Emmanuel A

    2017-11-28

    Concurrent with mental processes that require rigorous computation and control, a series of automated decisions and actions govern our daily lives, providing efficient and adaptive responses to environmental demands. Using a cognitive flexibility task, we show that a set of brain regions collectively known as the default mode network plays a crucial role in such "autopilot" behavior, i.e., when rapidly selecting appropriate responses under predictable behavioral contexts. While applying learned rules, the default mode network shows both greater activity and connectivity. Furthermore, functional interactions between this network and hippocampal and parahippocampal areas as well as primary visual cortex correlate with the speed of accurate responses. These findings indicate a memory-based "autopilot role" for the default mode network, which may have important implications for our current understanding of healthy and adaptive brain processing.

  6. Cloud Standardization: Consistent Business Processes and Information

    Directory of Open Access Journals (Sweden)

    Razvan Daniel ZOTA

    2013-01-01

    Full Text Available Cloud computing represents one of the latest emerging trends in distributed computing that enables the existence of hardware infrastructure and software applications as services. The present paper offers a general approach to the cloud computing standardization as a mean of improving the speed of adoption for the cloud technologies. Moreover, this study tries to show out how organizations may achieve more consistent business processes while operating with cloud computing technologies.

  7. Quantum-Classical Hybrid for Information Processing

    Science.gov (United States)

    Zak, Michail

    2011-01-01

    Based upon quantum-inspired entanglement in quantum-classical hybrids, a simple algorithm for instantaneous transmissions of non-intentional messages (chosen at random) to remote distances is proposed. The idea is to implement instantaneous transmission of conditional information on remote distances via a quantum-classical hybrid that preserves superposition of random solutions, while allowing one to measure its state variables using classical methods. Such a hybrid system reinforces the advantages, and minimizes the limitations, of both quantum and classical characteristics. Consider n observers, and assume that each of them gets a copy of the system and runs it separately. Although they run identical systems, the outcomes of even synchronized runs may be different because the solutions of these systems are random. However, the global constrain must be satisfied. Therefore, if the observer #1 (the sender) made a measurement of the acceleration v(sub 1) at t =T, then the receiver, by measuring the corresponding acceleration v(sub 1) at t =T, may get a wrong value because the accelerations are random, and only their ratios are deterministic. Obviously, the transmission of this knowledge is instantaneous as soon as the measurements have been performed. In addition to that, the distance between the observers is irrelevant because the x-coordinate does not enter the governing equations. However, the Shannon information transmitted is zero. None of the senders can control the outcomes of their measurements because they are random. The senders cannot transmit intentional messages. Nevertheless, based on the transmitted knowledge, they can coordinate their actions based on conditional information. If the observer #1 knows his own measurements, the measurements of the others can be fully determined. It is important to emphasize that the origin of entanglement of all the observers is the joint probability density that couples their actions. There is no centralized source

  8. Gathering Information from Transport Systems for Processing in Supply Chains

    Science.gov (United States)

    Kodym, Oldřich; Unucka, Jakub

    2016-12-01

    Paper deals with complex system for processing information from means of transport acting as parts of train (rail or road). It focuses on automated information gathering using AutoID technology, information transmission via Internet of Things networks and information usage in information systems of logistic firms for support of selected processes on MES and ERP levels. Different kinds of gathered information from whole transport chain are discussed. Compliance with existing standards is mentioned. Security of information in full life cycle is integral part of presented system. Design of fully equipped system based on synthesized functional nodes is presented.

  9. Information Integration; The process of integration, evolution and versioning

    NARCIS (Netherlands)

    de Keijzer, Ander; van Keulen, Maurice

    2005-01-01

    At present, many information sources are available wherever you are. Most of the time, the information needed is spread across several of those information sources. Gathering this information is a tedious and time consuming job. Automating this process would assist the user in its task. Integration

  10. Why genetic information processing could have a quantum basis

    Indian Academy of Sciences (India)

    ; computation; database search; DNA; enzyme; information; nucleotide base; protein; quantum coherence; quantum mechanics; superposition; ... Optimization criteria in this information processing can be searched for using the laws of physics.

  11. Quantum information processing with mesoscopic photonic states

    DEFF Research Database (Denmark)

    Madsen, Lars Skovgaard

    2012-01-01

    The thesis is built up around a versatile optical experimental setup based on a laser, two optical parametric ampliers, a few sets of modulators and two sets of homodyne detectors, which together with passive linear optics generate, process and characterize various types of Gaussian quantum states....... Using this setup we have experimentally and theoretically investigated Gaussian quantum discord, continuous variable quantum key distribution and quantum polarization. The Gaussian discord broadens the definition of non-classical correlations from entanglement, to all types of correlations which cannot...... in the mixture of coherent states. Further we investigate the robustness of the discord of a broader range of states and suggest a toolbox of states which can be used to test if a protocol is discord based, before performing a rigid proof. Gaussian quantum key distribution can be implemented with current...

  12. Bases biomoleculares do fotoenvelhecimento Molecular basis of photoaging

    Directory of Open Access Journals (Sweden)

    Suelen Montagner

    2009-07-01

    Full Text Available Com o aumento da expectativa de vida, o estudo do processo de envelhecimento orgânico tem sido estimulado. O envelhecimento da pele, órgão que espelha os sinais do tempo, é processo de deterioração progressiva, tempo-dependente, e pode ser intensificado pela exposição solar, então designado fotoenvelhecimento. O dano das radiações sobre diversas estruturas celulares e cutâneas leva a alterações morfológicas nesses componentes, fruto de modificações biomoleculares. Muitas pesquisas são desenvolvidas com o intuito de combater ou minimizar os efeitos do fotoenvelhecimento, porém a principal estratégia nesse sentido continua sendo a prevenção, só conseguida pelo progressivo desvendar dos mecanismos fisiopatogênicos envolvidos nesse processo.As a result of the increase in life expectancy, the study of the organic process of aging has been stimulated. Skin ageing, which reflects the signs of time, is a time-dependent process of progressive deterioration that can be intensified by sun exposure, which is known as photoaging. The damage of radiation on various cell structures and on the skin results in molecular and morphological changes to these components. Many research studies are performed to try to minimize the effects of photoaging; however, the main strategy to manage it is still prevention, which will only be achieved once we learn about the mechanisms involved in the process.

  13. Evolution of biomolecular loadings along a major river system

    Science.gov (United States)

    Freymond, Chantal V.; Kündig, Nicole; Stark, Courcelle; Peterse, Francien; Buggle, Björn; Lupker, Maarten; Plötze, Michael; Blattmann, Thomas M.; Filip, Florin; Giosan, Liviu; Eglinton, Timothy I.

    2018-02-01

    Understanding the transport history and fate of organic carbon (OC) within river systems is crucial in order to constrain the dynamics and significance of land-ocean interactions as a component of the global carbon cycle. Fluvial export and burial of terrestrial OC in marine sediments influences atmospheric CO2 over a range of timescales, while river-dominated sedimentary sequences can provide valuable archives of paleoenvironmental information. While there is abundant evidence that the association of organic matter (OM) with minerals exerts an important influence on its stability as well as hydrodynamic behavior in aquatic systems, there is a paucity of information on where such associations form and how they evolve during fluvial transport. Here, we track total organic carbon (TOC) and terrestrial biomarker concentrations (plant wax-derived long-chain fatty acids (FA), branched glycerol dialkyl glycerol tetraethers (brGDGTs) and lignin-derived phenols) in sediments collected along the entire course of the Danube River system in the context of sedimentological parameters. Mineral-specific surface area-normalized biomarker and TOC concentrations show a systematic decrease from the upper to the lower Danube basin. Changes in OM loading of the available mineral phase correspond to a net decrease of 70-80% of different biomolecular components. Ranges for biomarker loadings on Danube River sediments, corresponding to 0.4-1.5 μgFA/m2 for long-chain (n-C24-32) fatty acids and 17-71 ngbrGDGT/m2 for brGDGTs, are proposed as a benchmark for comparison with other systems. We propose that normalizing TOC as well as biomarker concentrations to mineral surface area provides valuable quantitative constraints on OM dynamics and organo-mineral interactions during fluvial transport from terrigenous source to oceanic sink.

  14. Quantum information processing with graph states

    International Nuclear Information System (INIS)

    Schlingemann, Dirk-Michael

    2005-04-01

    Graph states are multiparticle states which are associated with graphs. Each vertex of the graph corresponds to a single system or particle. The links describe quantum correlations (entanglement) between pairs of connected particles. Graph states were initiated independently by two research groups: On the one hand, graph states were introduced by Briegel and Raussendorf as a resource for a new model of one-way quantum computing, where algorithms are implemented by a sequence of measurements at single particles. On the other hand, graph states were developed by the author of this thesis and ReinhardWerner in Braunschweig, as a tool to build quantum error correcting codes, called graph codes. The connection between the two approaches was fully realized in close cooperation of both research groups. This habilitation thesis provides a survey of the theory of graph codes, focussing mainly, but not exclusively on the author's own research work. We present the theoretical and mathematical background for the analysis of graph codes. The concept of one-way quantum computing for general graph states is discussed. We explicitly show how to realize the encoding and decoding device of a graph code on a one-way quantum computer. This kind of implementation is to be seen as a mathematical description of a quantum memory device. In addition to that, we investigate interaction processes, which enable the creation of graph states on very large systems. Particular graph states can be created, for instance, by an Ising type interaction between next neighbor particles which sits at the points of an infinitely extended cubic lattice. Based on the theory of quantum cellular automata, we give a constructive characterization of general interactions which create a translationally invariant graph state. (orig.)

  15. Holledge gauge failure testing using concurrent information processing algorithm

    International Nuclear Information System (INIS)

    Weeks, G.E.; Daniel, W.E.; Edwards, R.E.; Jannarone, R.J.; Joshi, S.N.; Palakodety, S.S.; Qian, D.

    1996-01-01

    For several decades, computerized information processing systems and human information processing models have developed with a good deal of mutual influence. Any comprehensive psychology text in this decade uses terms that originated in the computer industry, such as ''cache'' and ''memory'', to describe human information processing. Likewise, many engineers today are using ''artificial intelligence''and ''artificial neural network'' computing tools that originated as models of human thought to solve industrial problems. This paper concerns a recently developed human information processing model, called ''concurrent information processing'' (CIP), and a related set of computing tools for solving industrial problems. The problem of focus is adaptive gauge monitoring; the application is pneumatic pressure repeaters (Holledge gauges) used to measure liquid level and density in the Defense Waste Processing Facility and the Integrated DWPF Melter System

  16. Photonic Architecture for Scalable Quantum Information Processing in Diamond

    Directory of Open Access Journals (Sweden)

    Kae Nemoto

    2014-08-01

    Full Text Available Physics and information are intimately connected, and the ultimate information processing devices will be those that harness the principles of quantum mechanics. Many physical systems have been identified as candidates for quantum information processing, but none of them are immune from errors. The challenge remains to find a path from the experiments of today to a reliable and scalable quantum computer. Here, we develop an architecture based on a simple module comprising an optical cavity containing a single negatively charged nitrogen vacancy center in diamond. Modules are connected by photons propagating in a fiber-optical network and collectively used to generate a topological cluster state, a robust substrate for quantum information processing. In principle, all processes in the architecture can be deterministic, but current limitations lead to processes that are probabilistic but heralded. We find that the architecture enables large-scale quantum information processing with existing technology.

  17. Unveiling the mystery of visual information processing in human brain.

    Science.gov (United States)

    Diamant, Emanuel

    2008-08-15

    It is generally accepted that human vision is an extremely powerful information processing system that facilitates our interaction with the surrounding world. However, despite extended and extensive research efforts, which encompass many exploration fields, the underlying fundamentals and operational principles of visual information processing in human brain remain unknown. We still are unable to figure out where and how along the path from eyes to the cortex the sensory input perceived by the retina is converted into a meaningful object representation, which can be consciously manipulated by the brain. Studying the vast literature considering the various aspects of brain information processing, I was surprised to learn that the respected scholarly discussion is totally indifferent to the basic keynote question: "What is information?" in general or "What is visual information?" in particular. In the old days, it was assumed that any scientific research approach has first to define its basic departure points. Why was it overlooked in brain information processing research remains a conundrum. In this paper, I am trying to find a remedy for this bizarre situation. I propose an uncommon definition of "information", which can be derived from Kolmogorov's Complexity Theory and Chaitin's notion of Algorithmic Information. Embracing this new definition leads to an inevitable revision of traditional dogmas that shape the state of the art of brain information processing research. I hope this revision would better serve the challenging goal of human visual information processing modeling.

  18. Combining vibrational biomolecular spectroscopy with chemometric techniques for the study of response and sensitivity of molecular structures/functional groups mainly related to lipid biopolymer to various processing applications.

    Science.gov (United States)

    Yu, Gloria Qingyu; Yu, Peiqiang

    2015-09-01

    The objectives of this project were to (1) combine vibrational spectroscopy with chemometric multivariate techniques to determine the effect of processing applications on molecular structural changes of lipid biopolymer that mainly related to functional groups in green- and yellow-type Crop Development Centre (CDC) pea varieties [CDC strike (green-type) vs. CDC meadow (yellow-type)] that occurred during various processing applications; (2) relatively quantify the effect of processing applications on the antisymmetric CH3 ("CH3as") and CH2 ("CH2as") (ca. 2960 and 2923 cm(-1), respectively), symmetric CH3 ("CH3s") and CH2 ("CH2s") (ca. 2873 and 2954 cm(-1), respectively) functional groups and carbonyl C=O ester (ca. 1745 cm(-1)) spectral intensities as well as their ratios of antisymmetric CH3 to antisymmetric CH2 (ratio of CH3as to CH2as), ratios of symmetric CH3 to symmetric CH2 (ratio of CH3s to CH2s), and ratios of carbonyl C=O ester peak area to total CH peak area (ratio of C=O ester to CH); and (3) illustrate non-invasive techniques to detect the sensitivity of individual molecular functional group to the various processing applications in the recently developed different types of pea varieties. The hypothesis of this research was that processing applications modified the molecular structure profiles in the processed products as opposed to original unprocessed pea seeds. The results showed that the different processing methods had different impacts on lipid molecular functional groups. Different lipid functional groups had different sensitivity to various heat processing applications. These changes were detected by advanced molecular spectroscopy with chemometric techniques which may be highly related to lipid utilization and availability. The multivariate molecular spectral analyses, cluster analysis, and principal component analysis of original spectra (without spectral parameterization) are unable to fully distinguish the structural differences in the

  19. Virtual HRD and National Culture: An Information Processing Perspective

    Science.gov (United States)

    Chung, Chih-Hung; Angnakoon, Putthachat; Li, Jessica; Allen, Jeff

    2016-01-01

    Purpose: The purpose of this study is to provide researchers with a better understanding of the cultural impact on information processing in virtual learning environment. Design/methodology/approach: This study uses a causal loop diagram to depict the cultural impact on information processing in the virtual human resource development (VHRD)…

  20. Attachment in Middle Childhood: Associations with Information Processing

    Science.gov (United States)

    Zimmermann, Peter; Iwanski, Alexandra

    2015-01-01

    Attachment theory suggests that internal working models of self and significant others influence adjustment during development by controlling information processing and self-regulation. We provide a conceptual overview on possible mechanisms linking attachment and information processing and review the current literature in middle childhood.…

  1. Motivated information processing in organizational teams: Progress, puzzles, and prospects

    NARCIS (Netherlands)

    Nijstad, B.A.; de Dreu, C.K.W.

    2012-01-01

    Much of the research into group and team functioning looks at groups that perform cognitive tasks, such as decision making, problem solving, and innovation. The Motivated Information Processing in Groups Model (MIP-G; De Dreu, Nijstad, & Van Knippenberg, 2008) conjectures that information processing

  2. Team confidence, motivated information processing, and dynamic group decision making

    NARCIS (Netherlands)

    De Dreu, Carsten K W; Beersma, Bianca

    2010-01-01

    According to the Motivated Information Processing in Groups (MIP-G) model, groups should perform ambiguous (non-ambiguous) tasks better when they have high (low) epistemic motivation and concomitant tendencies to engage in systematic (heuristic) information processing and exchange. The authors

  3. Information architecture: Standards adoption and retirement process service action plan

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1997-03-01

    The purpose of this Service Action Plan is to announce, as well as provide, a high-level outline of a new Departmental process for the adoption and retirement of information technology standards. This process supports the implementation of a Department of Energy (DOE) Information Architecture. This plan was prepared with the Department of Energy information technology standards customers and stakeholders in mind. The process described in this plan will be serviced primarily by staff from the Office of the Deputy Assistant Secretary for Information Management with assistance from designated program and site Information Technology Standards Points of Contact. We welcome any comments regarding this new Departmental process and encourage the proposal of information technology standards for adoption or retirement.

  4. The use of gold nanoparticle aggregation for DNA computing and logic-based biomolecular detection

    International Nuclear Information System (INIS)

    Lee, In-Hee; Yang, Kyung-Ae; Zhang, Byoung-Tak; Lee, Ji-Hoon; Park, Ji-Yoon; Chai, Young Gyu; Lee, Jae-Hoon

    2008-01-01

    The use of DNA molecules as a physical computational material has attracted much interest, especially in the area of DNA computing. DNAs are also useful for logical control and analysis of biological systems if efficient visualization methods are available. Here we present a quick and simple visualization technique that displays the results of the DNA computing process based on a colorimetric change induced by gold nanoparticle aggregation, and we apply it to the logic-based detection of biomolecules. Our results demonstrate its effectiveness in both DNA-based logical computation and logic-based biomolecular detection

  5. Motivated information processing in group judgment and decision making

    NARCIS (Netherlands)

    De Dreu, Carsten K. W.; Nijstad, Bernard A.; van Knippenberg, Daan

    This article expands the view of groups as information processors into a motivated information processing in groups (MIP-G) model by emphasizing, first, the mixed-motive structure of many group tasks and, second, the idea that individuals engage in more or less deliberate information search and

  6. Informative providing of processes of development on industrial enterprises

    OpenAIRE

    Kalinichenko, L.

    2010-01-01

    Information is definite by the basic resource of activity of enterprises. Suggestion in relation to the selection of informative subsystems of strategic, tactical, operative management is borne. The list of indexes in relation to estimation of the informative providing of functional processes of enterprise is offered.

  7. 1st International Conference on Cognitive Systems and Information Processing

    CERN Document Server

    Hu, Dewen; Liu, Huaping

    2014-01-01

    "Foundations and Practical Applications of Cognitive Systems and Information Processing" presents selected papers from the First International Conference on Cognitive Systems and Information Processing, held in Beijing, China on December 15-17, 2012 (CSIP2012). The aim of this conference is to bring together experts from different fields of expertise to discuss the state-of-the-art in artificial cognitive systems and advanced information processing, and to present new findings and perspectives on future development. This book introduces multidisciplinary perspectives on the subject areas of Cognitive Systems and Information Processing, including cognitive sciences and technology, autonomous vehicles, cognitive psychology, cognitive metrics, information fusion, image/video understanding, brain-computer interfaces, visual cognitive processing, neural computation, bioinformatics, etc. The book will be beneficial for both researchers and practitioners in the fields of Cognitive Science, Computer Science and Cogni...

  8. Conjoint Management of Business Processes and Information Technologies

    DEFF Research Database (Denmark)

    Siurdyban, Artur

    and improve business processes. As a consequence, there is a growing need to address managerial aspects of the relationships between information technologies and business processes. The aim of this PhD study is to investigate how the practice of conjoint management of business processes and information...... technologies can be supported and improved. The study is organized into five research papers and this summary. Each paper addresses a different aspect of conjoint management of business processes and information technologies, i.e. problem development and managerial practices on software...... and information technologies in a project environment. It states that both elements are intrinsically related and should be designed and considered together. The second case examines the relationships between information technology management and business process management. It discusses the multi-faceted role...

  9. New functionalities in the GROMOS biomolecular simulation software

    NARCIS (Netherlands)

    Kunz, A.P.E.; Allison, J.R.; Geerke, D.P.; Horta, B.A.C.; Hünenberger, Ph.H.; Riniker, S; Schmid, N.; van Gunsteren, W.F.

    2012-01-01

    Since the most recent description of the functionalities of the GROMOS software for biomolecular simulation in 2005 many new functions have been implemented. In this article, the new functionalities that involve modified forces in a molecular dynamics (MD) simulation are described: the treatment of

  10. Transient response characteristics in a biomolecular integral controller.

    Science.gov (United States)

    Sen, Shaunak

    2016-04-01

    The cellular behaviour of perfect adaptation is achieved through the use of an integral control element in the underlying biomolecular circuit. It is generally unclear how integral action affects the important aspect of transient response in these biomolecular systems, especially in light of the fact that it typically deteriorates the transient response in engineering contexts. To address this issue, the authors investigated the transient response in a computational model of a simple biomolecular integral control system involved in bacterial signalling. They find that the transient response can actually speed up as the integral gain parameter increases. On further analysis, they find that the underlying dynamics are composed of slow and fast modes and the speed-up of the transient response is because of the speed-up of the slow-mode dynamics. Finally, they note how an increase in the integral gain parameter also leads to a decrease in the amplitude of the transient response, consistent with the overall improvement in the transient response. These results should be useful in understanding the overall effect of integral action on system dynamics, particularly for biomolecular systems.

  11. Synergy of Two Highly Specific Biomolecular Recognition Events

    DEFF Research Database (Denmark)

    Ejlersen, Maria; Christensen, Niels Johan; Sørensen, Kasper K

    2018-01-01

    Two highly specific biomolecular recognition events, nucleic acid duplex hybridization and DNA-peptide recognition in the minor groove, were coalesced in a miniature ensemble for the first time by covalently attaching a natural AT-hook peptide motif to nucleic acid duplexes via a 2'-amino...

  12. Improvements to the APBS biomolecular solvation software suite.

    Science.gov (United States)

    Jurrus, Elizabeth; Engel, Dave; Star, Keith; Monson, Kyle; Brandi, Juan; Felberg, Lisa E; Brookes, David H; Wilson, Leighton; Chen, Jiahui; Liles, Karina; Chun, Minju; Li, Peter; Gohara, David W; Dolinsky, Todd; Konecny, Robert; Koes, David R; Nielsen, Jens Erik; Head-Gordon, Teresa; Geng, Weihua; Krasny, Robert; Wei, Guo-Wei; Holst, Michael J; McCammon, J Andrew; Baker, Nathan A

    2018-01-01

    The Adaptive Poisson-Boltzmann Solver (APBS) software was developed to solve the equations of continuum electrostatics for large biomolecular assemblages that have provided impact in the study of a broad range of chemical, biological, and biomedical applications. APBS addresses the three key technology challenges for understanding solvation and electrostatics in biomedical applications: accurate and efficient models for biomolecular solvation and electrostatics, robust and scalable software for applying those theories to biomolecular systems, and mechanisms for sharing and analyzing biomolecular electrostatics data in the scientific community. To address new research applications and advancing computational capabilities, we have continually updated APBS and its suite of accompanying software since its release in 2001. In this article, we discuss the models and capabilities that have recently been implemented within the APBS software package including a Poisson-Boltzmann analytical and a semi-analytical solver, an optimized boundary element solver, a geometry-based geometric flow solvation model, a graph theory-based algorithm for determining pK a values, and an improved web-based visualization tool for viewing electrostatics. © 2017 The Protein Society.

  13. Processing reafferent and exafferent visual information for action and perception.

    Science.gov (United States)

    Reichenbach, Alexandra; Diedrichsen, Jörn

    2015-01-01

    A recent study suggests that reafferent hand-related visual information utilizes a privileged, attention-independent processing channel for motor control. This process was termed visuomotor binding to reflect its proposed function: linking visual reafferences to the corresponding motor control centers. Here, we ask whether the advantage of processing reafferent over exafferent visual information is a specific feature of the motor processing stream or whether the improved processing also benefits the perceptual processing stream. Human participants performed a bimanual reaching task in a cluttered visual display, and one of the visual hand cursors could be displaced laterally during the movement. We measured the rapid feedback responses of the motor system as well as matched perceptual judgments of which cursor was displaced. Perceptual judgments were either made by watching the visual scene without moving or made simultaneously to the reaching tasks, such that the perceptual processing stream could also profit from the specialized processing of reafferent information in the latter case. Our results demonstrate that perceptual judgments in the heavily cluttered visual environment were improved when performed based on reafferent information. Even in this case, however, the filtering capability of the perceptual processing stream suffered more from the increasing complexity of the visual scene than the motor processing stream. These findings suggest partly shared and partly segregated processing of reafferent information for vision for motor control versus vision for perception.

  14. Scanning probe and micropatterning approaches for biomolecular screening applications

    Energy Technology Data Exchange (ETDEWEB)

    Wilde, Lisa M

    2002-07-01

    Force mapping using atomic force microscopy (AFM) allows for the simultaneous acquisition of topography and probe-sample interaction data. For example, AFM probes functionalised with an antigen can be employed to map the spatial distribution of recognition events on a substrate functionalised with the complementary specific antibody. However, this technique is currently limited to the detection of a single receptor-ligand species. Were the detection of multiple receptor-ligand interactions possible, AFM force mapping would offer greater scope as a sensitive tool for bioassay and screening applications. This thesis outlines developments in probe and substrate immobilisation methods to facilitate this process. We have developed an immobilisation strategy, which allows two antigen species, human serum albumin (HSA) and the beta subunit of human chorionic gonadotropin ({beta}hCG) to be simultaneously present on an AFM probe. Single point force spectroscopy results have revealed the ability of such probes to discriminate between their corresponding antibodies (anti-HSA and anti-{beta}hCG lgG antibodies). In addition, these antibodies have been employed in the fabrication of a 2-D biomolecular array using microfluidic network patterning. The formed chequered pattern was visualised with fluorescence microscopy using fluorescently tagged anti-IgG antibodies. In parallel with such developments we have employed AFM force volume imaging to investigate the distribution of antigen binding sites on an antibody functionalised substrate. Highly resolved adhesion maps were obtained of surfaces functionalised with anti-HSA lgG antibodies using HSA functionalised AFM probes, adopting the sample molecular tether immobilisation strategy employed in the single point force spectroscopy investigations. The observed forces were seen to be comparable with previous investigations. The addition of free HSA into the system was found to result in a significant reduction in the number of

  15. Information Technology Process Improvement Decision-Making: An Exploratory Study from the Perspective of Process Owners and Process Managers

    Science.gov (United States)

    Lamp, Sandra A.

    2012-01-01

    There is information available in the literature that discusses information technology (IT) governance and investment decision making from an executive-level perception, yet there is little information available that offers the perspective of process owners and process managers pertaining to their role in IT process improvement and investment…

  16. Information processing capacity in psychopathy: Effects of anomalous attention.

    Science.gov (United States)

    Hamilton, Rachel K B; Newman, Joseph P

    2018-03-01

    Hamilton and colleagues (2015) recently proposed that an integrative deficit in psychopathy restricts simultaneous processing, thereby leaving fewer resources available for information encoding, narrowing the scope of attention, and undermining associative processing. The current study evaluated this parallel processing deficit proposal using the Simultaneous-Sequential paradigm. This investigation marks the first a priori test of the Hamilton et al.'s theoretical framework. We predicted that psychopathy would be associated with inferior performance (as indexed by lower accuracy and longer response time) on trials requiring simultaneous processing of visual information relative to trials necessitating sequential processing. Results were consistent with these predictions, supporting the proposal that psychopathy is characterized by a reduced capacity to process multicomponent perceptual information concurrently. We discuss the potential implications of impaired simultaneous processing for the conceptualization of the psychopathic deficit. (PsycINFO Database Record (c) 2018 APA, all rights reserved).

  17. Improved monitoring of batch processes by incorporating external information

    NARCIS (Netherlands)

    Ramaker, H. J.; van Sprang, E. N. M.; Gurden, S. P.; Westerhuis, J. A.; Smilde, A. K.

    2002-01-01

    In this paper an overview is given of statistical process monitoring with the emphasis on batch processes and the possible steps to take for improving this by incorporating external information. First, the general concept of statistical process monitoring of batches is explained. This concept has

  18. A simplified computational memory model from information processing.

    Science.gov (United States)

    Zhang, Lanhua; Zhang, Dongsheng; Deng, Yuqin; Ding, Xiaoqian; Wang, Yan; Tang, Yiyuan; Sun, Baoliang

    2016-11-23

    This paper is intended to propose a computational model for memory from the view of information processing. The model, called simplified memory information retrieval network (SMIRN), is a bi-modular hierarchical functional memory network by abstracting memory function and simulating memory information processing. At first meta-memory is defined to express the neuron or brain cortices based on the biology and graph theories, and we develop an intra-modular network with the modeling algorithm by mapping the node and edge, and then the bi-modular network is delineated with intra-modular and inter-modular. At last a polynomial retrieval algorithm is introduced. In this paper we simulate the memory phenomena and functions of memorization and strengthening by information processing algorithms. The theoretical analysis and the simulation results show that the model is in accordance with the memory phenomena from information processing view.

  19. A simplified computational memory model from information processing

    Science.gov (United States)

    Zhang, Lanhua; Zhang, Dongsheng; Deng, Yuqin; Ding, Xiaoqian; Wang, Yan; Tang, Yiyuan; Sun, Baoliang

    2016-01-01

    This paper is intended to propose a computational model for memory from the view of information processing. The model, called simplified memory information retrieval network (SMIRN), is a bi-modular hierarchical functional memory network by abstracting memory function and simulating memory information processing. At first meta-memory is defined to express the neuron or brain cortices based on the biology and graph theories, and we develop an intra-modular network with the modeling algorithm by mapping the node and edge, and then the bi-modular network is delineated with intra-modular and inter-modular. At last a polynomial retrieval algorithm is introduced. In this paper we simulate the memory phenomena and functions of memorization and strengthening by information processing algorithms. The theoretical analysis and the simulation results show that the model is in accordance with the memory phenomena from information processing view. PMID:27876847

  20. Horizontal information drives the behavioural signatures of face processing

    Directory of Open Access Journals (Sweden)

    Valerie Goffaux

    2010-09-01

    Full Text Available Recent psychophysical evidence indicates that the vertical arrangement of horizontal information is particularly important for encoding facial identity. In this paper we extend this notion to examine the role that information at different (particularly cardinal orientations might play in a number of established phenomena each a behavioural “signature” of face processing. In particular we consider (a the face inversion effect (FIE, (b the facial identity after-effect, (c face-matching across viewpoint, and (d interactive, so-called holistic, processing of face parts. We report that filtering faces to remove all but the horizontal information largely preserves these effects but conversely, retaining vertical information generally diminishes or abolishes them. We conclude that preferential processing of horizontal information is a central feature of human face processing that supports many of the behavioural signatures of this critical visual operation.

  1. Moral judgment as information processing: an integrative review.

    Science.gov (United States)

    Guglielmo, Steve

    2015-01-01

    How do humans make moral judgments about others' behavior? This article reviews dominant models of moral judgment, organizing them within an overarching framework of information processing. This framework poses two distinct questions: (1) What input information guides moral judgments? and (2) What psychological processes generate these judgments? Information Models address the first question, identifying critical information elements (including causality, intentionality, and mental states) that shape moral judgments. A subclass of Biased Information Models holds that perceptions of these information elements are themselves driven by prior moral judgments. Processing Models address the second question, and existing models have focused on the relative contribution of intuitive versus deliberative processes. This review organizes existing moral judgment models within this framework and critically evaluates them on empirical and theoretical grounds; it then outlines a general integrative model grounded in information processing, and concludes with conceptual and methodological suggestions for future research. The information-processing framework provides a useful theoretical lens through which to organize extant and future work in the rapidly growing field of moral judgment.

  2. Moral judgment as information processing: an integrative review

    Science.gov (United States)

    Guglielmo, Steve

    2015-01-01

    How do humans make moral judgments about others’ behavior? This article reviews dominant models of moral judgment, organizing them within an overarching framework of information processing. This framework poses two distinct questions: (1) What input information guides moral judgments? and (2) What psychological processes generate these judgments? Information Models address the first question, identifying critical information elements (including causality, intentionality, and mental states) that shape moral judgments. A subclass of Biased Information Models holds that perceptions of these information elements are themselves driven by prior moral judgments. Processing Models address the second question, and existing models have focused on the relative contribution of intuitive versus deliberative processes. This review organizes existing moral judgment models within this framework and critically evaluates them on empirical and theoretical grounds; it then outlines a general integrative model grounded in information processing, and concludes with conceptual and methodological suggestions for future research. The information-processing framework provides a useful theoretical lens through which to organize extant and future work in the rapidly growing field of moral judgment. PMID:26579022

  3. Sources of Information as Determinants of Product and Process Innovation.

    Science.gov (United States)

    Gómez, Jaime; Salazar, Idana; Vargas, Pilar

    2016-01-01

    In this paper we use a panel of manufacturing firms in Spain to examine the extent to which they use internal and external sources of information (customers, suppliers, competitors, consultants and universities) to generate product and process innovation. Our results show that, although internal sources are influential, external sources of information are key to achieve innovation performance. These results are in line with the open innovation literature because they show that firms that are opening up their innovation process and that use different information sources have a greater capacity to generate innovations. We also find that the importance of external sources of information varies depending on the type of innovation (product or process) considered. To generate process innovation, firms mainly rely on suppliers while, to generate product innovation, the main contribution is from customers. The potential simultaneity between product and process innovation is also taken into consideration. We find that the generation of both types of innovation is not independent.

  4. Sources of Information as Determinants of Product and Process Innovation

    Science.gov (United States)

    2016-01-01

    In this paper we use a panel of manufacturing firms in Spain to examine the extent to which they use internal and external sources of information (customers, suppliers, competitors, consultants and universities) to generate product and process innovation. Our results show that, although internal sources are influential, external sources of information are key to achieve innovation performance. These results are in line with the open innovation literature because they show that firms that are opening up their innovation process and that use different information sources have a greater capacity to generate innovations. We also find that the importance of external sources of information varies depending on the type of innovation (product or process) considered. To generate process innovation, firms mainly rely on suppliers while, to generate product innovation, the main contribution is from customers. The potential simultaneity between product and process innovation is also taken into consideration. We find that the generation of both types of innovation is not independent. PMID:27035456

  5. Direct Nanoscale Conversion of Biomolecular Signals into Electronic Information

    Science.gov (United States)

    2008-09-22

    of SIAB is reactive towards amine groups, which are prevalent on all proteins in the form of lysine , arginine , asparagine and glutamine residues...Introduction to Proteins and Opportunities for Data Mining and Bioinformatics, Bioscience and Biotechnology: Recognition, Antagonism and Affinity Science...Lessons from Studies of Receptor Machines, and Material Science and Engineering: Recognition, Antagonism and Affinity Science; Lessons from Studies

  6. A Process Model for Goal-Based Information Retrieval

    Directory of Open Access Journals (Sweden)

    Harvey Hyman

    2014-12-01

    Full Text Available In this paper we examine the domain of information search and propose a "goal-based" approach to study search strategy. We describe "goal-based information search" using a framework of Knowledge Discovery. We identify two Information Retrieval (IR goals using the constructs of Knowledge Acquisition (KA and Knowledge Explanation (KE. We classify these constructs into two specific information problems: An exploration-exploitation problem and an implicit-explicit problem. Our proposed framework is an extension of prior work in this domain, applying an IR Process Model originally developed for Legal-IR and adapted to Medical-IR. The approach in this paper is guided by the recent ACM-SIG Medical Information Retrieval (MedIR Workshop definition: "methodologies and technologies that seek to improve access to medical information archives via a process of information retrieval."

  7. Metastable memristive lines for signal transmission and information processing applications

    Science.gov (United States)

    Slipko, Valeriy A.; Pershin, Yuriy V.

    2017-04-01

    Traditional studies of memristive devices have mainly focused on their applications in nonvolatile information storage and information processing. Here, we demonstrate that the third fundamental component of information technologies—the transfer of information—can also be employed with memristive devices. For this purpose, we introduce a metastable memristive circuit. Combining metastable memristive circuits into a line, one obtains an architecture capable of transferring a signal edge from one space location to another. We emphasize that the suggested metastable memristive lines employ only resistive circuit components. Moreover, their networks (for example, Y-connected lines) have an information processing capability.

  8. Basic information processing in children with Pervasive Developmental Disorders

    DEFF Research Database (Denmark)

    Madsen, Gitte

    to 12 months. Schizophrenia is characterised by disturbances in the brain’s processing of information. One example of information processing is the brain’s ability to gate or filter out stimuli, the so-called “filter function”. Psychophysiological studies have shown, that patients with schizophrenia...... have reduced sensory motor gating measured by”P50 suppression” and reduced”pre-pulse inhibition of the startle reflex” (PPI). Aims: 1. To compare basic information processing in children with PDD and a group of healthy controls. 2. To investigate whether it is possible, on the basis of outcomes...

  9. The Trichotomy of Processes: a philosophical basis for information systems

    Directory of Open Access Journals (Sweden)

    George Widmeyer

    2003-11-01

    Full Text Available The principle of trichotomy from the American philosopher Charles S. Peirce can be used to categorize processes into the triad of transactional, relational, and informational. The usefulness of these categories is explicated by a comparison with structuration theory and control theory, and elaborated with a consideration of democracy in a knowledge economy. These three example applications of the process triad show the generality of the conceptual categories and provide a natural way of bringing ideas from social and ethical theories into information systems design. Modeling the world and understanding business applications through the use of the Trichotomy of Processes should facilitate the development of more valuable information systems.

  10. Splash, pop, sizzle: Information processing with phononic computing

    International Nuclear Information System (INIS)

    Sklan, Sophia R.

    2015-01-01

    Phonons, the quanta of mechanical vibration, are important to the transport of heat and sound in solid materials. Recent advances in the fundamental control of phonons (phononics) have brought into prominence the potential role of phonons in information processing. In this review, the many directions of realizing phononic computing and information processing are examined. Given the relative similarity of vibrational transport at different length scales, the related fields of acoustic, phononic, and thermal information processing are all included, as are quantum and classical computer implementations. Connections are made between the fundamental questions in phonon transport and phononic control and the device level approach to diodes, transistors, memory, and logic. 

  11. Process system of radiometric and magnetometric aerial information

    International Nuclear Information System (INIS)

    Bazua Rueda, L.F.

    1985-01-01

    The author has been working first in the National Institute of Nuclear Energy (Mexico) and then in URAMEX (Uranio Mexicano) since 1975 to 1983, integrated to radiometric and magnetometric aerial prospecting projects in computerized processing of information aspects. During this period the author participated in the work out of computing systems, information processing and mathematical procedures definition for the geophysical reduction of the calibration equipment data. With cumulated experience, in this thesis are presented aspects concerning to management and operation of computerized processing of information systems. Operation handbooks of the majority of modules are presented. Program lists are not included. (Author)

  12. Information Technology in Small Medium Enterprise: Logistic and Production Processes

    Directory of Open Access Journals (Sweden)

    Maurizio Pighin

    2017-01-01

    Full Text Available This paper presents and discuss a survey which describes how small-medium enterprises (SMEs implement and use their information system with respect to their logistic and production processes. The study first describes the rationale of the research, then it identifies the characteristics of the companies and detects their general attitude towards information technology (IT. In the following section the paper presents a set of detailed processes to verify the structure and workflow of companies and how IT supports their processes. In the last part we study the influence of some company characteristics to effective use of processes and to different technological approaches, to support defined logistic and production processes. The novelty of the study and its interest, both in academic and institutional context as in the real world, resides in the opportunity to verify and understand the different attitudes of SMEs towards information technology in defining, organizing, planning and control their processes.

  13. Interacting with the biomolecular solvent accessible surface via a haptic feedback device

    Directory of Open Access Journals (Sweden)

    Hayward Steven

    2009-10-01

    Full Text Available Abstract Background From the 1950s computer based renderings of molecules have been produced to aid researchers in their understanding of biomolecular structure and function. A major consideration for any molecular graphics software is the ability to visualise the three dimensional structure of the molecule. Traditionally, this was accomplished via stereoscopic pairs of images and later realised with three dimensional display technologies. Using a haptic feedback device in combination with molecular graphics has the potential to enhance three dimensional visualisation. Although haptic feedback devices have been used to feel the interaction forces during molecular docking they have not been used explicitly as an aid to visualisation. Results A haptic rendering application for biomolecular visualisation has been developed that allows the user to gain three-dimensional awareness of the shape of a biomolecule. By using a water molecule as the probe, modelled as an oxygen atom having hard-sphere interactions with the biomolecule, the process of exploration has the further benefit of being able to determine regions on the molecular surface that are accessible to the solvent. This gives insight into how awkward it is for a water molecule to gain access to or escape from channels and cavities, indicating possible entropic bottlenecks. In the case of liver alcohol dehydrogenase bound to the inhibitor SAD, it was found that there is a channel just wide enough for a single water molecule to pass through. Placing the probe coincident with crystallographic water molecules suggests that they are sometimes located within small pockets that provide a sterically stable environment irrespective of hydrogen bonding considerations. Conclusion By using the software, named HaptiMol ISAS (available from http://www.haptimol.co.uk, one can explore the accessible surface of biomolecules using a three-dimensional input device to gain insights into the shape and water

  14. Raman spectroscopy detects biomolecular changes associated with nanoencapsulated hesperetin treatment in experimental oral carcinogenesis

    Science.gov (United States)

    Gurushankar, K.; Gohulkumar, M.; Kumar, Piyush; Krishna, C. Murali; Krishnakumar, N.

    2016-03-01

    Recently it has been shown that Raman spectroscopy possesses great potential in the investigation of biomolecular changes of tumor tissues with therapeutic drug response in a non-invasive and label-free manner. The present study is designed to investigate the antitumor effect of hespertin-loaded nanoparticles (HETNPs) relative to the efficacy of native hesperetin (HET) in modifying the biomolecular changes during 7,12-dimethyl benz(a)anthracene (DMBA)-induced oral carcinogenesis using a Raman spectroscopic technique. Significant differences in the intensity and shape of the Raman spectra between the control and the experimental tissues at 1800-500 cm-1 were observed. Tumor tissues are characterized by an increase in the relative amount of proteins, nucleic acids, tryptophan and phenylalanine and a decrease in the percentage of lipids when compared to the control tissues. Further, oral administration of HET and its nanoparticulates restored the status of the lipids and significantly decreased the levels of protein and nucleic acid content. Treatment with HETNPs showed a more potent antitumor effect than treatment with native HET, which resulted in an overall reduction in the intensity of several biochemical Raman bands in DMBA-induced oral carcinogenesis being observed. Principal component and linear discriminant analysis (PC-LDA), together with leave-one-out cross validation (LOOCV) on Raman spectra yielded diagnostic sensitivities of 100%, 80%, 91.6% and 65% and specificities of 100%, 65%, 60% and 55% for classification of control versus DMBA, DMBA versus DMBA  +  HET, DMBA versus DMBA  +  HETNPs and DMBA  +  HET versus DMBA  +  HETNPs treated tissue groups, respectively. These results further demonstrate that Raman spectroscopy associated with multivariate statistical algorithms could be a valuable tool for developing a comprehensive understanding of the process of biomolecular changes, and could reveal the signatures of the

  15. Science-based information processing in the process control of power stations

    International Nuclear Information System (INIS)

    Weisang, C.

    1992-01-01

    Through the application of specialized systems, future-orientated information processing integrates the sciences of processes, control systems, process control strategies, user behaviour and ergonomics. Improvements in process control can be attained, inter alia, by the preparation of the information contained (e.g. by suppressing the flow of signals and replacing it with signals which are found on substance) and also by an ergonomic representation of the study of the process. (orig.) [de

  16. Finite-Time Approach to Microeconomic and Information Exchange Processes

    Directory of Open Access Journals (Sweden)

    Serghey A. Amelkin

    2009-07-01

    Full Text Available Finite-time approach allows one to optimize regimes of processes in macrosystems when duration of the processes is restricted. Driving force of the processes is difference of intensive variables: temperatures in thermodynamics, values in economics, etc. In microeconomic systems two counterflow fluxes appear due to the only driving force. They are goods and money fluxes. Another possible case is two fluxes with the same direction. The processes of information exchange can be described by this formalism.

  17. Lateralization of spatial information processing in response monitoring

    Directory of Open Access Journals (Sweden)

    Ann-Kathrin eStock

    2014-01-01

    Full Text Available The current study aims at identifying how lateralized multisensory spatial information processing affects response monitoring and action control. In a previous study, we investigated multimodal sensory integration in response monitoring processes using a Simon task. Behavioral and neurophysiologic results suggested that different aspects of response monitoring are asymmetrically and independently allocated to the hemispheres: While efference-copy based information on the motor execution of the task is further processed in the hemisphere that originally generated the motor command, proprioception-based spatial information is processed in the hemisphere contralateral to the effector. Hence, crossing hands (entering a foreign spatial hemifield yielded an augmented bilateral activation during response monitoring since these two kinds of information were processed in opposing hemispheres. Because the traditional Simon task does not provide the possibility to investigate which aspect of the spatial configuration leads to the observed hemispheric allocation, we introduced a new double crossed condition that allows for the dissociation of internal / physiological and external / physical influences on response monitoring processes. Comparing behavioral and neurophysiologic measures of this new condition to those of the traditional Simon task setup, we could demonstrate that the egocentric representation of the physiological effector’s spatial location accounts for the observed lateralization of spatial information in action control. The finding that the location of the physical effector had a very small influence on response monitoring measures suggests that this aspect is either less important and / or processed in different brain areas than egocentric physiological information.

  18. Physics Colloquium: The optical route to quantum information processing

    CERN Multimedia

    Université de Genève

    2011-01-01

    Geneva University Physics Department 24, Quai Ernest Ansermet CH-1211 Geneva 4 Monday 11 April 2011 17h00 - Ecole de Physique, Auditoire Stückelberg The optical route to quantum information processing Prof. Terry Rudolph/Imperial College, London Photons are attractive as carriers of quantum information both because they travel, and can thus transmit information, but also because of their good coherence properties and ease in undergoing single-qubit manipulations. The main obstacle to their use in information processing is inducing an effective interaction between them in order to produce entanglement. The most promising approach in photon-based information processing architectures is so-called measurement-based quantum computing. This relies on creating upfront a multi-qubit highly entangled state (the cluster state) which has the remarkable property that, once prepared, it can be used to perform quantum computation by making only single qubit measurements. In this talk I will discuss generically the...

  19. The Logic Process Formalism of the Informational Domain

    Directory of Open Access Journals (Sweden)

    2007-01-01

    Full Text Available The performance of present-day informational technologies has two main properties: the universality of the structures used and the flexibility of the final user's interfaces. The first determines the potential cover area of the informational domain. The second determines the diversity and efficiency of processing methods of the proceedings being automated. The mentioned aspects are of great importance in agriculture and ecology because there are complex processes and considerable volumes of used information. For example, the meteoro-logical processes are a part of the ecological one like habitats' existential conditions and are known as a complex prognostic problem. The latter needs considerable computational resources to solve the appropriate equations. Likewise, agriculture as a controlled activity under strong impact from natural conditions has the same high requirements for diverse structures and flexibility of information processing.

  20. INFORMATION SYSTEM OF AUTOMATION OF PREPARATION EDUCATIONAL PROCESS DOCUMENTS

    Directory of Open Access Journals (Sweden)

    V. A. Matyushenko

    2016-01-01

    Full Text Available Information technology is rapidly conquering the world, permeating all spheres of human activity. Education is not an exception. An important direction of information of education is the development of university management systems. Modern information systems improve and facilitate the management of all types of activities of the institution. The purpose of this paper is development of system, which allows automating process of formation of accounting documents. The article describes the problem of preparation of the educational process documents. Decided to project and create the information system in Microsoft Access environment. The result is four types of reports obtained by using the developed system. The use of this system now allows you to automate the process and reduce the effort required to prepare accounting documents. All reports was implement in Microsoft Excel software product and can be used for further analysis and processing.

  1. Enhancing Quality of Orthotic Services with Process and Outcome Information

    Science.gov (United States)

    2017-10-01

    AWARD NUMBER: W81XWH-16-1-0788 TITLE: Enhancing Quality of Orthotic Services with Process and Outcome Information PRINCIPAL INVESTIGATOR...SUBTITLE 5a. CONTRACT NUMBER Enhancing Quality of Orthotic Services with Process and Outcome Information 5b. GRANT NUMBER W81XWH-16-1-0788 5c...this proposed project is to develop data collection modules that can be used to improve the quality of services for users of ankle-foot orthoses (AFOs

  2. Breakdown of local information processing may underlie isoflurane anesthesia effects.

    Science.gov (United States)

    Wollstadt, Patricia; Sellers, Kristin K; Rudelt, Lucas; Priesemann, Viola; Hutt, Axel; Fröhlich, Flavio; Wibral, Michael

    2017-06-01

    The disruption of coupling between brain areas has been suggested as the mechanism underlying loss of consciousness in anesthesia. This hypothesis has been tested previously by measuring the information transfer between brain areas, and by taking reduced information transfer as a proxy for decoupling. Yet, information transfer is a function of the amount of information available in the information source-such that transfer decreases even for unchanged coupling when less source information is available. Therefore, we reconsidered past interpretations of reduced information transfer as a sign of decoupling, and asked whether impaired local information processing leads to a loss of information transfer. An important prediction of this alternative hypothesis is that changes in locally available information (signal entropy) should be at least as pronounced as changes in information transfer. We tested this prediction by recording local field potentials in two ferrets after administration of isoflurane in concentrations of 0.0%, 0.5%, and 1.0%. We found strong decreases in the source entropy under isoflurane in area V1 and the prefrontal cortex (PFC)-as predicted by our alternative hypothesis. The decrease in source entropy was stronger in PFC compared to V1. Information transfer between V1 and PFC was reduced bidirectionally, but with a stronger decrease from PFC to V1. This links the stronger decrease in information transfer to the stronger decrease in source entropy-suggesting reduced source entropy reduces information transfer. This conclusion fits the observation that the synaptic targets of isoflurane are located in local cortical circuits rather than on the synapses formed by interareal axonal projections. Thus, changes in information transfer under isoflurane seem to be a consequence of changes in local processing more than of decoupling between brain areas. We suggest that source entropy changes must be considered whenever interpreting changes in information

  3. Information processing speed in obstructive sleep apnea syndrome: a review.

    Science.gov (United States)

    Kilpinen, R; Saunamäki, T; Jehkonen, M

    2014-04-01

    To provide a comprehensive review of studies on information processing speed in patients with obstructive sleep apnea syndrome (OSAS) as compared to healthy controls and normative data, and to determine whether continuous positive airway pressure (CPAP) treatment improves information processing speed. A systematic review was performed on studies drawn from Medline and PsycINFO (January 1990-December 2011) and identified from lists of references in these studies. After inclusion criteria, 159 articles were left for abstract review, and after exclusion criteria 44 articles were fully reviewed. The number of patients in the studies reviewed ranged from 10 to 157 and the study samples consisted mainly of men. Half of the studies reported that patients with OSAS showed reduced information processing speed when compared to healthy controls. Reduced information processing speed was seen more often (75%) when compared to norm-referenced data. Psychomotor speed seemed to be particularly liable to change. CPAP treatment improved processing speed, but the improvement was marginal when compared to placebo or conservative treatment. Patients with OSAS are affected by reduced information processing speed, which may persist despite CPAP treatment. Information processing is usually assessed as part of other cognitive functioning, not as a cognitive domain per se. However, it is important to take account of information processing speed when assessing other aspects of cognitive functioning. This will make it possible to determine whether cognitive decline in patients with OSAS is based on lower-level or higher-level cognitive processes or both. © 2013 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

  4. Information processing in the outer retina of fish

    NARCIS (Netherlands)

    Endeman, D.

    2017-01-01

    The retina translates light into neuronal activity. Thus, it renders visual information of the external environment. The retina can only send a limited amount of information to the brain within a given period. To use this amount optimally, light stimuli are strongly processed in the retina. This

  5. Using warping information for batch process monitoring and fault classification.

    NARCIS (Netherlands)

    González-Martínez, J.M.; Westerhuis, J.A.; Ferrer, A.

    2013-01-01

    This paper discusses how to use the warping information obtained after batch synchronization for process monitoring and fault classification. The warping information can be used for i) building unsupervised control charts or ii) fault classification when a rich faulty batches database is available.

  6. Information Technologies and Globalization: New Perspectives of Teaching Learning Process

    Science.gov (United States)

    Hussain, Irshad

    2008-01-01

    This article discusses how information technologies and globalization have opened new avenues and horizons for educators and learners. It discusses different experiences of using information and communication technologies (ICTs) in teaching learning process the world over in the age of globalization. It focuses on the ways these new trends have…

  7. Carbon – the first frontier of information processing

    Indian Academy of Sciences (India)

    Unknown

    carried out by proteins. Properties of amino acids indicate that the present triplet genetic code was preceded by a more primitive one, coding for 10 amino acids using two nucleotide bases. [Patel A 2002 Carbon – the first frontier of information processing; J. Biosci. 27 207–218]. 1. Structural information. It is a characteristic ...

  8. Reshaping the Enterprise through an Information Architecture and Process Reengineering.

    Science.gov (United States)

    Laudato, Nicholas C.; DeSantis, Dennis J.

    1995-01-01

    The approach used by the University of Pittsburgh (Pennsylvania) in designing a campus-wide information architecture and a framework for reengineering the business process included building consensus on a general philosophy for information systems, using pattern-based abstraction techniques, applying data modeling and application prototyping, and…

  9. Morphological evidence for parallel processing of information in rat macula

    Science.gov (United States)

    Ross, M. D.

    1988-01-01

    Study of montages, tracings and reconstructions prepared from a series of 570 consecutive ultrathin sections shows that rat maculas are morphologically organized for parallel processing of linear acceleratory information. Type II cells of one terminal field distribute information to neighboring terminals as well. The findings are examined in light of physiological data which indicate that macular receptor fields have a preferred directional vector, and are interpreted by analogy to a computer technology known as an information network.

  10. Information Processing Bias in Post-traumatic Stress Disorder

    OpenAIRE

    Weber, Darren L

    2008-01-01

    This review considers theory and evidence for abnormal information processing in post-traumatic stress disorder (PTSD). Cognitive studies have indicated sensitivity in PTSD for traumatic information, more so than general emotional information. These findings were supported by neuroimaging studies that identify increased brain activity during traumatic cognition, especially in affective networks (including the amygdala, orbitofrontal and anterior cingulate cortex). In theory, it is proposed th...

  11. Process Control Security in the Cybercrime Information Exchange NICC

    OpenAIRE

    Luiijf, H.A.M.

    2009-01-01

    Detecting, investigating and prosecuting cybercrime? Extremely important, but not really the solution for the problem. Prevention is better! The sectors that have joined the Cybercrime Information Exchange have accepted the challenge of ensuring the effectiveness of the (information) security of process control systems (PCS), including SCADA. This publication makes it clear why it is vital that organizations establish and maintain control over the security of the information and communication...

  12. Time-resolved methods in biophysics. 9. Laser temperature-jump methods for investigating biomolecular dynamics.

    Science.gov (United States)

    Kubelka, Jan

    2009-04-01

    Many important biochemical processes occur on the time-scales of nanoseconds and microseconds. The introduction of the laser temperature-jump (T-jump) to biophysics more than a decade ago opened these previously inaccessible time regimes up to direct experimental observation. Since then, laser T-jump methodology has evolved into one of the most versatile and generally applicable methods for studying fast biomolecular kinetics. This perspective is a review of the principles and applications of the laser T-jump technique in biophysics. A brief overview of the T-jump relaxation kinetics and the historical development of laser T-jump methodology is presented. The physical principles and practical experimental considerations that are important for the design of the laser T-jump experiments are summarized. These include the Raman conversion for generating heating pulses, considerations of size, duration and uniformity of the temperature jump, as well as potential adverse effects due to photo-acoustic waves, cavitation and thermal lensing, and their elimination. The laser T-jump apparatus developed at the NIH Laboratory of Chemical Physics is described in detail along with a brief survey of other laser T-jump designs in use today. Finally, applications of the laser T-jump in biophysics are reviewed, with an emphasis on the broad range of problems where the laser T-jump methodology has provided important new results and insights into the dynamics of the biomolecular processes.

  13. IMPROVING THE QUALITY OF MAINTENANCE PROCESSES USING INFORMATION TECHNOLOGY

    Directory of Open Access Journals (Sweden)

    Zora Arsovski

    2008-06-01

    Full Text Available In essence, process of maintaining equipment is a support process, because it indirectly contributes to operational ability of the production process necessary for the supply chain of the new value. Taking into account increased levels of automatization and quality, this proces s becomes more and more significant and for some branches of industry, even crucial. Due to the fact that the quality of the entire process is more and more dependent on the maintenance process, these processes must be carefully designed and effectively im plemented. There are various techniques and approaches at our disposal, such as technical, logistical and intensive application of the information - communication technologies. This last approach is presented in this work. It begins with organizational goa ls, especially quality objectives. Then, maintenance processes and integrated information system structures are defined. Maintenance process quality and improvement processes are defined using a set of performances, with a special emphasis placed on effectiveness and quality economics. At the end of the work, information system for improving maintenance economics is structured. Besides theoretical analysis, work also presents results authors obtained analyzing food industry, metal processing industry an d building materials industry.

  14. ADMINISTRATION OF THE INFORMATION AND THE PROCESS OF BANK NEGOTIATION

    Directory of Open Access Journals (Sweden)

    Almir Lindemann

    2009-07-01

    Full Text Available This paper analyzes the quality of the administration of information, identifying deficiencies in the information systems, used in the negotiation process for concession of bank credit, to small and mid-sized companies, under the business managers' perspective. The results make the deficiencies evident and confirm the need for change in the systems of administration of information, in order to allow for both an improvement in the negotiation process of bank credit as well as a larger economical efficiency of the available resources.

  15. Pathways from Toddler Information Processing to Adolescent Lexical Proficiency

    Science.gov (United States)

    Rose, Susan A.; Feldman, Judith F.; Jankowski, Jeffery J.

    2015-01-01

    This study examined the relation of 3-year core information-processing abilities to lexical growth and development. The core abilities covered four domains--memory, representational competence (cross-modal transfer), processing speed, and attention. Lexical proficiency was assessed at 3 and 13 years with the Peabody Picture Vocabulary Test (PPVT)…

  16. Information Processing and Dynamics in Minimally Cognitive Agents

    Science.gov (United States)

    Beer, Randall D.; Williams, Paul L.

    2015-01-01

    There has been considerable debate in the literature about the relative merits of information processing versus dynamical approaches to understanding cognitive processes. In this article, we explore the relationship between these two styles of explanation using a model agent evolved to solve a relational categorization task. Specifically, we…

  17. Temporal Expectation and Information Processing: A Model-Based Analysis

    Science.gov (United States)

    Jepma, Marieke; Wagenmakers, Eric-Jan; Nieuwenhuis, Sander

    2012-01-01

    People are able to use temporal cues to anticipate the timing of an event, enabling them to process that event more efficiently. We conducted two experiments, using the fixed-foreperiod paradigm (Experiment 1) and the temporal-cueing paradigm (Experiment 2), to assess which components of information processing are speeded when subjects use such…

  18. Why genetic information processing could have a quantum basis

    Indian Academy of Sciences (India)

    Optimization criteria in this information processing can be searched for using the laws of physics. Quantum dynamics can explain why living organisms have 4 nucleotide bases and 20 amino acids, as optimal solutions of the molecular assembly process. Experiments should be able to tell whether evolution indeed took ...

  19. Toward an Information Processing Analysis of Field-Independence.

    Science.gov (United States)

    Davis, J. Kent; Cochran, Kathryn F.

    Goodenough's (1976) findings on field dependence/independence are extended here by focusing on the information processing stages of attention, encoding in short term and working memories, and storage and retrieval processes of long term memory. The reviewed research indicates that field independent and dependent individuals differ in the ability…

  20. Knowledge acquisition process as an issue in information sciences

    Directory of Open Access Journals (Sweden)

    Boris Bosančić

    2016-07-01

    Full Text Available The paper presents an overview of some problems of information science which are explicitly portrayed in literature. It covers the following issues: information explosion, information flood and data deluge, information retrieval and relevance of information, and finally, the problem of scientific communication. The purpose of this paper is to explain why knowledge acquisition, can be considered as an issue in information sciences. The existing theoretical foundation within the information sciences, i.e. the DIKW hierarchy and its key concepts - data, information, knowledge and wisdom, is recognized as a symbolic representation as well as the theoretical foundation of the knowledge acquisition process. Moreover, it seems that the relationship between the DIKW hierarchy and the knowledge acquisition process is essential for a stronger foundation of information sciences in the 'body' of the overall human knowledge. In addition, the history of both the human and machine knowledge acquisition has been considered, as well as a proposal that the DIKW hierarchy take place as a symbol of general knowledge acquisition process, which could equally relate to both human and machine knowledge acquisition. To achieve this goal, it is necessary to modify the existing concept of the DIKW hierarchy. The appropriate modification of the DIKW hierarchy (one of which is presented in this paper could result in a much more solid theoretical foundation of the knowledge acquisition process and information sciences as a whole. The theoretical assumptions on which the knowledge acquisition process may be established as a problem of information science are presented at the end of the paper. The knowledge acquisition process does not necessarily have to be the subject of epistemology. It may establish a stronger link between the concepts of data and knowledge; furthermore, it can be used in the context of scientific research, but on the more primitive level than conducting

  1. Development of technical information processing system(VI)

    Energy Technology Data Exchange (ETDEWEB)

    Lee, Jee Hoh; Kim, Tae Hwan; Choi, Kwang; Chung, Hyun Sook; Keum, Jong Yong [Korea Atomic Energy Research Institute, Taejon (Korea, Republic of)

    1994-12-01

    This project is to establish high-quality information circulation system by developing serials-control system to improve serials management from ordering to distributing and availability on R and D and to advance in quality of information service needed in R and D by fast retrieval and providing of research information with CD-Net. The results of the project are as follows. 1. Serials management process which covers from ordering to distributing have higher efficiency by development of subscription information system. 2. Systematic control on each issue of serials is achieved by development of serials checking system. 3. It is possible to provide vol. and no. information of issue received currently to researchers promptly by improvement of serials holding information system. 4. Retrieval of research information contained in various CD-ROM DB throughout KAERI-NET is possible by research on construction methods of CD-Net. 2 figs, 25 refs. (Author).

  2. Development of technical information processing system(VI)

    International Nuclear Information System (INIS)

    Lee, Jee Hoh; Kim, Tae Hwan; Choi, Kwang; Chung, Hyun Sook; Keum, Jong Yong

    1994-12-01

    This project is to establish high-quality information circulation system by developing serials-control system to improve serials management from ordering to distributing and availability on R and D and to advance in quality of information service needed in R and D by fast retrieval and providing of research information with CD-Net. The results of the project are as follows. 1. Serials management process which covers from ordering to distributing have higher efficiency by development of subscription information system. 2. Systematic control on each issue of serials is achieved by development of serials checking system. 3. It is possible to provide vol. and no. information of issue received currently to researchers promptly by improvement of serials holding information system. 4. Retrieval of research information contained in various CD-ROM DB throughout KAERI-NET is possible by research on construction methods of CD-Net. 2 figs, 25 refs. (Author)

  3. An Assembly Funnel Makes Biomolecular Complex Assembly Efficient

    Science.gov (United States)

    Zenk, John; Schulman, Rebecca

    2014-01-01

    Like protein folding and crystallization, the self-assembly of complexes is a fundamental form of biomolecular organization. While the number of methods for creating synthetic complexes is growing rapidly, most require empirical tuning of assembly conditions and/or produce low yields. We use coarse-grained simulations of the assembly kinetics of complexes to identify generic limitations on yields that arise because of the many simultaneous interactions allowed between the components and intermediates of a complex. Efficient assembly occurs when nucleation is fast and growth pathways are few, i.e. when there is an assembly “funnel”. For typical complexes, an assembly funnel occurs in a narrow window of conditions whose location is highly complex specific. However, by redesigning the components this window can be drastically broadened, so that complexes can form quickly across many conditions. The generality of this approach suggests assembly funnel design as a foundational strategy for robust biomolecular complex synthesis. PMID:25360818

  4. Physics at the biomolecular interface fundamentals for molecular targeted therapy

    CERN Document Server

    Fernández, Ariel

    2016-01-01

    This book focuses primarily on the role of interfacial forces in understanding biological phenomena at the molecular scale. By providing a suitable statistical mechanical apparatus to handle the biomolecular interface, the book becomes uniquely positioned to address core problems in molecular biophysics. It highlights the importance of interfacial tension in delineating a solution to the protein folding problem, in unravelling the physico-chemical basis of enzyme catalysis and protein associations, and in rationally designing molecular targeted therapies. Thus grounded in fundamental science, the book develops a powerful technological platform for drug discovery, while it is set to inspire scientists at any level in their careers determined to address the major challenges in molecular biophysics. The acknowledgment of how exquisitely the structure and dynamics of proteins and their aqueous environment are related attests to the overdue recognition that biomolecular phenomena cannot be effectively understood w...

  5. Real-time information and processing system for radiation protection

    International Nuclear Information System (INIS)

    Oprea, I.; Oprea, M.; Stoica, M.; Badea, E.; Guta, V.

    1999-01-01

    The real-time information and processing system has as main task to record, collect, process and transmit the radiation level and weather data, being proposed for radiation protection, environmental monitoring around nuclear facilities and for civil defence. Such a system can offer information in order to provide mapping, data base, modelling and communication and to assess the consequences of nuclear accidents. The system incorporates a number of stationary or mobile radiation monitoring equipment, weather parameter measuring station, a GIS-based information processing center and the communication network, all running on a real-time operating system. It provides the automatic data collection on-line and off-line, remote diagnostic, advanced presentation techniques, including a graphically oriented executive support, which has the ability to respond to an emergency by geographical representation of the hazard zones on the map.The system can be integrated into national or international environmental monitoring systems, being based on local intelligent measuring and transmission units, simultaneous processing and data presentation using a real-time operating system for PC and geographical information system (GIS). Such an integrated system is composed of independent applications operating under the same computer, which is capable to improve the protection of the population and decision makers efforts, updating the remote GIS data base. All information can be managed directly from the map by multilevel data retrieving and presentation by using on-line dynamic evolution of the events, environment information, evacuation optimization, image and voice processing

  6. Optimizing information processing in neuronal networks beyond critical states.

    Science.gov (United States)

    Ferraz, Mariana Sacrini Ayres; Melo-Silva, Hiago Lucas Cardeal; Kihara, Alexandre Hiroaki

    2017-01-01

    Critical dynamics have been postulated as an ideal regime for neuronal networks in the brain, considering optimal dynamic range and information processing. Herein, we focused on how information entropy encoded in spatiotemporal activity patterns may vary in critical networks. We employed branching process based models to investigate how entropy can be embedded in spatiotemporal patterns. We determined that the information capacity of critical networks may vary depending on the manipulation of microscopic parameters. Specifically, the mean number of connections governed the number of spatiotemporal patterns in the networks. These findings are compatible with those of the real neuronal networks observed in specific brain circuitries, where critical behavior is necessary for the optimal dynamic range response but the uncertainty provided by high entropy as coded by spatiotemporal patterns is not required. With this, we were able to reveal that information processing can be optimized in neuronal networks beyond critical states.

  7. Optimizing information processing in neuronal networks beyond critical states.

    Directory of Open Access Journals (Sweden)

    Mariana Sacrini Ayres Ferraz

    Full Text Available Critical dynamics have been postulated as an ideal regime for neuronal networks in the brain, considering optimal dynamic range and information processing. Herein, we focused on how information entropy encoded in spatiotemporal activity patterns may vary in critical networks. We employed branching process based models to investigate how entropy can be embedded in spatiotemporal patterns. We determined that the information capacity of critical networks may vary depending on the manipulation of microscopic parameters. Specifically, the mean number of connections governed the number of spatiotemporal patterns in the networks. These findings are compatible with those of the real neuronal networks observed in specific brain circuitries, where critical behavior is necessary for the optimal dynamic range response but the uncertainty provided by high entropy as coded by spatiotemporal patterns is not required. With this, we were able to reveal that information processing can be optimized in neuronal networks beyond critical states.

  8. STUDENTS READINESS TO USE INFORMATION TECHNOLOGY IN UNIVERSITIES EDUCATIONAL PROCESS

    Directory of Open Access Journals (Sweden)

    V. Denysenko

    2015-03-01

    Full Text Available The article analyzes the problem of readiness of students of different specialties to use information technology in the educational process of higher education. Particular attention is paid to contemporary processes of globalization and informatization of higher education as a priority trends of modern Ukrainian society. Experimental data provided in the publication are comparative characteristics of the students using different specialty areas and preparation of information technologies in education. Computerization of the educational process - one of the main priorities in the development of higher education, a new stage for the entire higher education system, promising improvements in the direction of learning in higher education

  9. Information geometrical characterization of the Onsager-Machlup process

    Science.gov (United States)

    Tanaka, Shigenori

    2017-12-01

    The Onsager-Machlup (OM) relaxation process, which provides a prototypical example of linear nonequilibrium thermodynamics, is characterized in terms of information geometry over the two-dimensional temperature-time parameter space. After deriving the probability distribution function for the OM process under the harmonic potential within a theoretical framework based on a transformation into imaginary-time quantum mechanics, the Fisher information metric is explicitly obtained. Differential geometry in the temperature-time space then gives the scalar curvature R = - 1 , thus specifying the OM process in a topological manner.

  10. Application of information and communication technology in process reengineering

    Directory of Open Access Journals (Sweden)

    Đurović Aleksandar M.

    2014-01-01

    Full Text Available This paper examines the role of information communication technologies in reengineering processes. General analysis of a process will show that information communication technologies improve their efficiency. Reengineering model based on the BPMN 2.0 standard will be applied to the process of seeking internship/job by students from Faculty of Transport and Traffic Engineering. In the paper, after defining the technical characteristics and required functionalities, web / mobile application is proposed, enabling better visibility of traffic engineers to companies seeking that education profile.

  11. DockScreen: A Database of In Silico Biomolecular Interactions to Support Computational Toxicology

    Directory of Open Access Journals (Sweden)

    Michael-Rock Goldsmith

    2014-01-01

    Full Text Available We have developed DockScreen, a database of in silico biomolecular interactions designed to enable rational molecular toxicological insight within a computational toxicology framework. This database is composed of chemical/target (receptor and enzyme binding scores calculated by molecular docking of more than 1000 chemicals into 150 protein targets and contains nearly 135 thousand unique ligand/target binding scores. Obtaining this dataset was achieved using eHiTS (Simbiosys Inc., a fragment-based molecular docking approach with an exhaustive search algorithm, on a heterogeneous distributed high-performance computing framework. The chemical landscape covered in DockScreen comprises selected environmental and therapeutic chemicals. The target landscape covered in DockScreen was selected based on the availability of high-quality crystal structures that covered the assay space of phase I ToxCast in vitro assays. This in silico data provides continuous information that establishes a means for quantitatively comparing, on a structural biophysical basis, a chemical’s profile of biomolecular interactions. The combined minimum-score chemical/target matrix is provided.

  12. TopologyNet: Topology based deep convolutional and multi-task neural networks for biomolecular property predictions.

    Directory of Open Access Journals (Sweden)

    Zixuan Cang

    2017-07-01

    Full Text Available Although deep learning approaches have had tremendous success in image, video and audio processing, computer vision, and speech recognition, their applications to three-dimensional (3D biomolecular structural data sets have been hindered by the geometric and biological complexity. To address this problem we introduce the element-specific persistent homology (ESPH method. ESPH represents 3D complex geometry by one-dimensional (1D topological invariants and retains important biological information via a multichannel image-like representation. This representation reveals hidden structure-function relationships in biomolecules. We further integrate ESPH and deep convolutional neural networks to construct a multichannel topological neural network (TopologyNet for the predictions of protein-ligand binding affinities and protein stability changes upon mutation. To overcome the deep learning limitations from small and noisy training sets, we propose a multi-task multichannel topological convolutional neural network (MM-TCNN. We demonstrate that TopologyNet outperforms the latest methods in the prediction of protein-ligand binding affinities, mutation induced globular protein folding free energy changes, and mutation induced membrane protein folding free energy changes.weilab.math.msu.edu/TDL/.

  13. Utility-based early modulation of processing distracting stimulus information.

    Science.gov (United States)

    Wendt, Mike; Luna-Rodriguez, Aquiles; Jacobsen, Thomas

    2014-12-10

    Humans are selective information processors who efficiently prevent goal-inappropriate stimulus information to gain control over their actions. Nonetheless, stimuli, which are both unnecessary for solving a current task and liable to cue an incorrect response (i.e., "distractors"), frequently modulate task performance, even when consistently paired with a physical feature that makes them easily discernible from target stimuli. Current models of cognitive control assume adjustment of the processing of distractor information based on the overall distractor utility (e.g., predictive value regarding the appropriate response, likelihood to elicit conflict with target processing). Although studies on distractor interference have supported the notion of utility-based processing adjustment, previous evidence is inconclusive regarding the specificity of this adjustment for distractor information and the stage(s) of processing affected. To assess the processing of distractors during sensory-perceptual phases we applied EEG recording in a stimulus identification task, involving successive distractor-target presentation, and manipulated the overall distractor utility. Behavioral measures replicated previously found utility modulations of distractor interference. Crucially, distractor-evoked visual potentials (i.e., posterior N1) were more pronounced in high-utility than low-utility conditions. This effect generalized to distractors unrelated to the utility manipulation, providing evidence for item-unspecific adjustment of early distractor processing to the experienced utility of distractor information. Copyright © 2014 the authors 0270-6474/14/3416720-06$15.00/0.

  14. Information processing during NREM sleep and sleep quality in insomnia.

    Science.gov (United States)

    Ceklic, Tijana; Bastien, Célyne H

    2015-12-01

    Insomnia sufferers (INS) are cortically hyperaroused during sleep, which seems to translate into altered information processing during nighttime. While information processing, as measured by event-related potentials (ERPs), during wake appears to be associated with sleep quality of the preceding night, the existence of such an association during nighttime has never been investigated. This study aims to investigate nighttime information processing among good sleepers (GS) and INS while considering concomitant sleep quality. Following a multistep clinical evaluation, INS and GS participants underwent 4 consecutive nights of PSG recordings in the sleep laboratory. Thirty nine GS (mean age 34.56±9.02) and twenty nine INS (mean age 43.03±9.12) were included in the study. ERPs (N1, P2, N350) were recorded all night on Night 4 (oddball paradigm) during NREM sleep. Regardless of sleep quality, INS presented a larger N350 amplitude during SWS (p=0.042) while GS showed a larger N350 amplitude during late-night stage 2 sleep (p=0.004). Regardless of diagnosis, those who slept objectively well showed a smaller N350 amplitude (p=0.020) while those who slept subjectively well showed a smaller P2 (pInformation processing seems to be associated with concomitant subjective and objective sleep quality for both GS and INS. However, INS show an alteration in information processing during sleep, especially for inhibition processes, regardless of their sleep quality. Copyright © 2015 Elsevier B.V. All rights reserved.

  15. Processing of indexical information requires time: Evidence from change deafness.

    Science.gov (United States)

    Vitevitch, Michael S; Donoso, Alexander

    2011-08-01

    Studies of change detection have increased our understanding of attention, perception, and memory. In two innovative experiments we showed that the change detection phenomenon can be used to examine other areas of cognition-specifically, the processing of linguistic and indexical information in spoken words. One hypothesis suggests that cognitive resources must be used to process indexical information, whereas an alternative suggests that it is processed more slowly than linguistic information. Participants performed a lexical decision task and were asked whether the voice presenting the stimuli changed. Nonwords varying in their likeness to real words were used in the lexical decision task to encourage participants to vary the amount of cognitive resources/processing time. More cognitive resources/processing time are required to make a lexical decision with word-like nonwords. Participants who heard word-like nonwords were more likely to detect the change when it occurred (Experiment 1) and were more confident that the voice was the same when it did not change (Experiment 2). These results suggest that indexical information is processed more slowly than linguistic information and demonstrate how change detection can provide insight to other areas of cognition.

  16. An analytical approach to customer requirement information processing

    Science.gov (United States)

    Zhou, Zude; Xiao, Zheng; Liu, Quan; Ai, Qingsong

    2013-11-01

    'Customer requirements' (CRs) management is a key component of customer relationship management (CRM). By processing customer-focused information, CRs management plays an important role in enterprise systems (ESs). Although two main CRs analysis methods, quality function deployment (QFD) and Kano model, have been applied to many fields by many enterprises in the past several decades, the limitations such as complex processes and operations make them unsuitable for online businesses among small- and medium-sized enterprises (SMEs). Currently, most SMEs do not have the resources to implement QFD or Kano model. In this article, we propose a method named customer requirement information (CRI), which provides a simpler and easier way for SMEs to run CRs analysis. The proposed method analyses CRs from the perspective of information and applies mathematical methods to the analysis process. A detailed description of CRI's acquisition, classification and processing is provided.

  17. International seminar on safeguards information reporting and processing. Extended synopses

    International Nuclear Information System (INIS)

    1998-01-01

    Review of the safeguards of information technology, its current developments and status of safeguards in Member States are described concerning especially the role of domestic safeguards in cooperation with IAEA Safeguards. A Number of reports is dealing with declarations provided to the IAEA pursuant to Protocols Additional to Safeguard agreements. The Information Section of the IAEA Safeguards Information Technology Division is responsible for the data entry, loading and quality control od State supplied declarations. A software system is used to process information which should be readily accessible and usable in implementation of the strengthened safeguards system. Experiences in combating illegal trafficking of nuclear materials in a number of countries are included

  18. Computational information geometry for image and signal processing

    CERN Document Server

    Critchley, Frank; Dodson, Christopher

    2017-01-01

    This book focuses on the application and development of information geometric methods in the analysis, classification and retrieval of images and signals. It provides introductory chapters to help those new to information geometry and applies the theory to several applications. This area has developed rapidly over recent years, propelled by the major theoretical developments in information geometry, efficient data and image acquisition and the desire to process and interpret large databases of digital information. The book addresses both the transfer of methodology to practitioners involved in database analysis and in its efficient computational implementation.

  19. Basic disturbances of information processing in psychosis prediction.

    Science.gov (United States)

    Bodatsch, Mitja; Klosterkötter, Joachim; Müller, Ralf; Ruhrmann, Stephan

    2013-01-01

    The basic symptoms (BS) approach provides a valid instrument in predicting psychosis onset and represents moreover a significant heuristic framework for research. The term "basic symptoms" denotes subtle changes of cognition and perception in the earliest and prodromal stages of psychosis development. BS are thought to correspond to disturbances of neural information processing. Following the heuristic implications of the BS approach, the present paper aims at exploring disturbances of information processing, revealed by functional magnetic resonance imaging (fMRI) and electro-encephalographic as characteristics of the at-risk state of psychosis. Furthermore, since high-risk studies employing ultra-high-risk criteria revealed non-conversion rates commonly exceeding 50%, thus warranting approaches that increase specificity, the potential contribution of neural information processing disturbances to psychosis prediction is reviewed. In summary, the at-risk state seems to be associated with information processing disturbances. Moreover, fMRI investigations suggested that disturbances of language processing domains might be a characteristic of the prodromal state. Neurophysiological studies revealed that disturbances of sensory processing may assist psychosis prediction in allowing for a quantification of risk in terms of magnitude and time. The latter finding represents a significant advancement since an estimation of the time to event has not yet been achieved by clinical approaches. Some evidence suggests a close relationship between self-experienced BS and neural information processing. With regard to future research, the relationship between neural information processing disturbances and different clinical risk concepts warrants further investigations. Thereby, a possible time sequence in the prodromal phase might be of particular interest.

  20. Information-Processing and Perceptions of Control: How Attribution Style Affects Task-Relevant Processing

    Science.gov (United States)

    Yeigh, Tony

    2007-01-01

    This study investigated the effects of perceived controllability on information processing within Weiner's (1985, 1986) attributional model of learning. Attributional style was used to identify trait patterns of controllability for 37 university students. Task-relevant feedback on an information-processing task was then manipulated to test for…

  1. The interplay of intrinsic and extrinsic bounded noises in biomolecular networks.

    Science.gov (United States)

    Caravagna, Giulio; Mauri, Giancarlo; d'Onofrio, Alberto

    2013-01-01

    After being considered as a nuisance to be filtered out, it became recently clear that biochemical noise plays a complex role, often fully functional, for a biomolecular network. The influence of intrinsic and extrinsic noises on biomolecular networks has intensively been investigated in last ten years, though contributions on the co-presence of both are sparse. Extrinsic noise is usually modeled as an unbounded white or colored gaussian stochastic process, even though realistic stochastic perturbations are clearly bounded. In this paper we consider Gillespie-like stochastic models of nonlinear networks, i.e. the intrinsic noise, where the model jump rates are affected by colored bounded extrinsic noises synthesized by a suitable biochemical state-dependent Langevin system. These systems are described by a master equation, and a simulation algorithm to analyze them is derived. This new modeling paradigm should enlarge the class of systems amenable at modeling. We investigated the influence of both amplitude and autocorrelation time of a extrinsic Sine-Wiener noise on: (i) the Michaelis-Menten approximation of noisy enzymatic reactions, which we show to be applicable also in co-presence of both intrinsic and extrinsic noise, (ii) a model of enzymatic futile cycle and (iii) a genetic toggle switch. In (ii) and (iii) we show that the presence of a bounded extrinsic noise induces qualitative modifications in the probability densities of the involved chemicals, where new modes emerge, thus suggesting the possible functional role of bounded noises.

  2. The interplay of intrinsic and extrinsic bounded noises in biomolecular networks.

    Directory of Open Access Journals (Sweden)

    Giulio Caravagna

    Full Text Available After being considered as a nuisance to be filtered out, it became recently clear that biochemical noise plays a complex role, often fully functional, for a biomolecular network. The influence of intrinsic and extrinsic noises on biomolecular networks has intensively been investigated in last ten years, though contributions on the co-presence of both are sparse. Extrinsic noise is usually modeled as an unbounded white or colored gaussian stochastic process, even though realistic stochastic perturbations are clearly bounded. In this paper we consider Gillespie-like stochastic models of nonlinear networks, i.e. the intrinsic noise, where the model jump rates are affected by colored bounded extrinsic noises synthesized by a suitable biochemical state-dependent Langevin system. These systems are described by a master equation, and a simulation algorithm to analyze them is derived. This new modeling paradigm should enlarge the class of systems amenable at modeling. We investigated the influence of both amplitude and autocorrelation time of a extrinsic Sine-Wiener noise on: (i the Michaelis-Menten approximation of noisy enzymatic reactions, which we show to be applicable also in co-presence of both intrinsic and extrinsic noise, (ii a model of enzymatic futile cycle and (iii a genetic toggle switch. In (ii and (iii we show that the presence of a bounded extrinsic noise induces qualitative modifications in the probability densities of the involved chemicals, where new modes emerge, thus suggesting the possible functional role of bounded noises.

  3. Information processing systems, reasoning modules, and reasoning system design methods

    Science.gov (United States)

    Hohimer, Ryan E; Greitzer, Frank L; Hampton, Shawn D

    2014-03-04

    Information processing systems, reasoning modules, and reasoning system design methods are described. According to one aspect, an information processing system includes working memory comprising a semantic graph which comprises a plurality of abstractions, wherein the abstractions individually include an individual which is defined according to an ontology and a reasoning system comprising a plurality of reasoning modules which are configured to process different abstractions of the semantic graph, wherein a first of the reasoning modules is configured to process a plurality of abstractions which include individuals of a first classification type of the ontology and a second of the reasoning modules is configured to process a plurality of abstractions which include individuals of a second classification type of the ontology, wherein the first and second classification types are different.

  4. Information processing systems, reasoning modules, and reasoning system design methods

    Energy Technology Data Exchange (ETDEWEB)

    Hohimer, Ryan E.; Greitzer, Frank L.; Hampton, Shawn D.

    2015-08-18

    Information processing systems, reasoning modules, and reasoning system design methods are described. According to one aspect, an information processing system includes working memory comprising a semantic graph which comprises a plurality of abstractions, wherein the abstractions individually include an individual which is defined according to an ontology and a reasoning system comprising a plurality of reasoning modules which are configured to process different abstractions of the semantic graph, wherein a first of the reasoning modules is configured to process a plurality of abstractions which include individuals of a first classification type of the ontology and a second of the reasoning modules is configured to process a plurality of abstractions which include individuals of a second classification type of the ontology, wherein the first and second classification types are different.

  5. Information processing systems, reasoning modules, and reasoning system design methods

    Energy Technology Data Exchange (ETDEWEB)

    Hohimer, Ryan E.; Greitzer, Frank L.; Hampton, Shawn D.

    2016-08-23

    Information processing systems, reasoning modules, and reasoning system design methods are described. According to one aspect, an information processing system includes working memory comprising a semantic graph which comprises a plurality of abstractions, wherein the abstractions individually include an individual which is defined according to an ontology and a reasoning system comprising a plurality of reasoning modules which are configured to process different abstractions of the semantic graph, wherein a first of the reasoning modules is configured to process a plurality of abstractions which include individuals of a first classification type of the ontology and a second of the reasoning modules is configured to process a plurality of abstractions which include individuals of a second classification type of the ontology, wherein the first and second classification types are different.

  6. Hierarchical process memory: memory as an integral component of information processing

    Science.gov (United States)

    Hasson, Uri; Chen, Janice; Honey, Christopher J.

    2015-01-01

    Models of working memory commonly focus on how information is encoded into and retrieved from storage at specific moments. However, in the majority of real-life processes, past information is used continuously to process incoming information across multiple timescales. Considering single unit, electrocorticography, and functional imaging data, we argue that (i) virtually all cortical circuits can accumulate information over time, and (ii) the timescales of accumulation vary hierarchically, from early sensory areas with short processing timescales (tens to hundreds of milliseconds) to higher-order areas with long processing timescales (many seconds to minutes). In this hierarchical systems perspective, memory is not restricted to a few localized stores, but is intrinsic to information processing that unfolds throughout the brain on multiple timescales. “The present contains nothing more than the past, and what is found in the effect was already in the cause.”Henri L Bergson PMID:25980649

  7. QUALITY OF ACCOUNTING INFORMATION TO OPTIMIZE THE DECISIONAL PROCESS

    Directory of Open Access Journals (Sweden)

    Miculescu Marius Nicolae

    2012-12-01

    Full Text Available This article provides information on business and therefore need managers to obtain information relevant accounting, reliable, clear, accurate and lowest costs to optimize decision making. This need derives from the current economic environment. The survival of organizations in a competitive environment, to which they must adapt, is conditioned by obtaining accounting information which should be qualitative, opportune, vital, and in a short time. This information is related to patrimony, analytical results, the market (dynamics, dimensions, and structure, and relationships with business partners, competitors, suppliers. Therefore focus more intensely on the quality of accounting information. Definition of quality of accounting information but leave the boundaries and features of accounting communication process and aims to determine \\\\\\"quality criteria\\\\\\" or \\\\\\"qualitative characteristics\\\\\\" to develop a measurement tool. Note that the reviewliterature was found that the normalization and accounting dotrine, criteria for definition of quality of accounting infornation are not identical, their selection and ranking is different. Theory and practice also identifies the fact that information itself is worthless. Instead it is valuable once it is used in a decisional process. Thus, the economic value of the accounting information depends on the earnings obtained after making a decision, diminished by information cost. To be more specific, it depends on the table or on the implemented decision tree, on the informational cost and on the optimal condition established by the decision maker (due to the fact that producing accounting information implies costs which are often considerable and profits arise only form shares. The problem of convergence between content and interpretation of information sent by users also take, and the quality of information to be intelligible. In this case, those who use, say users should have sufficient

  8. The process of developing audiovisual patient information: challenges and opportunities.

    Science.gov (United States)

    Hutchison, Catherine; McCreaddie, May

    2007-11-01

    The aim of this project was to produce audiovisual patient information, which was user friendly and fit for purpose. The purpose of the audiovisual patient information is to inform patients about randomized controlled trials, as a supplement to their trial-specific written information sheet. Audiovisual patient information is known to be an effective way of informing patients about treatment. User involvement is also recognized as being important in the development of service provision. The aim of this paper is (i) to describe and discuss the process of developing the audiovisual patient information and (ii) to highlight the challenges and opportunities, thereby identifying implications for practice. A future study will test the effectiveness of the audiovisual patient information in the cancer clinical trial setting. An advisory group was set up to oversee the project and provide guidance in relation to information content, level and delivery. An expert panel of two patients provided additional guidance and a dedicated operational team dealt with the logistics of the project including: ethics; finance; scriptwriting; filming; editing and intellectual property rights. Challenges included the limitations of filming in a busy clinical environment, restricted technical and financial resources, ethical needs and issues around copyright. There were, however, substantial opportunities that included utilizing creative skills, meaningfully involving patients, teamworking and mutual appreciation of clinical, multidisciplinary and technical expertise. Developing audiovisual patient information is an important area for nurses to be involved with. However, this must be performed within the context of the multiprofessional team. Teamworking, including patient involvement, is crucial as a wide variety of expertise is required. Many aspects of the process are transferable and will provide information and guidance for nurses, regardless of specialty, considering developing this

  9. [Information processing speed and influential factors in multiple sclerosis].

    Science.gov (United States)

    Zhang, M L; Xu, E H; Dong, H Q; Zhang, J W

    2016-04-19

    To study the information processing speed and the influential factors in multiple sclerosis (MS) patients. A total of 36 patients with relapsing-remitting MS (RRMS), 21 patients with secondary progressive MS (SPMS), and 50 healthy control subjects from Xuanwu Hospital of Capital Medical University between April 2010 and April 2012 were included into this cross-sectional study.Neuropsychological tests was conducted after the disease had been stable for 8 weeks, including information processing speed, memory, executive functions, language and visual perception.Correlation between information processing speed and depression, fatigue, Expanded Disability Status Scale (EDSS) were studied. (1)MS patient groups demonstrated cognitive deficits compared to healthy controls.The Symbol Digit Modalities Test (SDMT) (control group 57±12; RRMS group 46±17; SPMS group 35±10, Pinformation processing (Pinformation processing speed, verbal memory and executive functioning are seen in MS patients, especially in SPMS subtype, while visual-spatial function is relatively reserved.Age, white matter change scales, EDSS scores, depression are negatively associated with information processing speed.

  10. Informed Consent Process: Foundation of the Researcher-participant Bond.

    Science.gov (United States)

    Sil, Amrita; Das, Nilay Kanti

    2017-01-01

    Consenting to participate in a clinical research study after being properly and correctly informed upholds the basic ethical principle of "autonomy" in human research. The informed consent is a process by which the physician sensitizes the patient about the nature, procedures, risks benefits, treatment schedules, etc of the study in a language that is non-technical and understandable by the study participant. Informed consent document (ICD) has got two parts: the 'Subject Information Sheet' and the 'Informed Consent Form' (ICF); and they have to be approved by the Institutional Ethics Committee (IEC) before administration. Consent should be obtained without any coercion. In case of a situation where a participant is not able to give informed consent (e.g. unconscious, minor or those suffering from severe mental illness or disability) or is illiterate, it has be obtained from a legally acceptable representative (LAR). If the participant or LAR is unable to read/write, then an impartial witness should be present during the entire informed consent process and must append his/her signatures to the consent form. For children consent is essential and for mature minors (age group 7 to 18 years) informed assent should be obtained.

  11. Development of Microdevices for Biomolecular Detection

    National Research Council Canada - National Science Library

    Manalis, Scott R

    2008-01-01

    .... In particular, glass encapsulated field-effect sensors that are chemically robust and batch-fabricated by a conventional 6" wafer process were developed and demonstrated for the following applications...

  12. Tripartite synapses: astrocytes process and control synaptic information.

    Science.gov (United States)

    Perea, Gertrudis; Navarrete, Marta; Araque, Alfonso

    2009-08-01

    The term 'tripartite synapse' refers to a concept in synaptic physiology based on the demonstration of the existence of bidirectional communication between astrocytes and neurons. Consistent with this concept, in addition to the classic 'bipartite' information flow between the pre- and postsynaptic neurons, astrocytes exchange information with the synaptic neuronal elements, responding to synaptic activity and, in turn, regulating synaptic transmission. Because recent evidence has demonstrated that astrocytes integrate and process synaptic information and control synaptic transmission and plasticity, astrocytes, being active partners in synaptic function, are cellular elements involved in the processing, transfer and storage of information by the nervous system. Consequently, in contrast to the classically accepted paradigm that brain function results exclusively from neuronal activity, there is an emerging view, which we review herein, in which brain function actually arises from the coordinated activity of a network comprising both neurons and glia.

  13. Information processing in the CNS: a supramolecular chemistry?

    Science.gov (United States)

    Tozzi, Arturo

    2015-10-01

    How does central nervous system process information? Current theories are based on two tenets: (a) information is transmitted by action potentials, the language by which neurons communicate with each other-and (b) homogeneous neuronal assemblies of cortical circuits operate on these neuronal messages where the operations are characterized by the intrinsic connectivity among neuronal populations. In this view, the size and time course of any spike is stereotypic and the information is restricted to the temporal sequence of the spikes; namely, the "neural code". However, an increasing amount of novel data point towards an alternative hypothesis: (a) the role of neural code in information processing is overemphasized. Instead of simply passing messages, action potentials play a role in dynamic coordination at multiple spatial and temporal scales, establishing network interactions across several levels of a hierarchical modular architecture, modulating and regulating the propagation of neuronal messages. (b) Information is processed at all levels of neuronal infrastructure from macromolecules to population dynamics. For example, intra-neuronal (changes in protein conformation, concentration and synthesis) and extra-neuronal factors (extracellular proteolysis, substrate patterning, myelin plasticity, microbes, metabolic status) can have a profound effect on neuronal computations. This means molecular message passing may have cognitive connotations. This essay introduces the concept of "supramolecular chemistry", involving the storage of information at the molecular level and its retrieval, transfer and processing at the supramolecular level, through transitory non-covalent molecular processes that are self-organized, self-assembled and dynamic. Finally, we note that the cortex comprises extremely heterogeneous cells, with distinct regional variations, macromolecular assembly, receptor repertoire and intrinsic microcircuitry. This suggests that every neuron (or group of

  14. Evaluation of EMG processing techniques using Information Theory

    Directory of Open Access Journals (Sweden)

    Felice Carmelo J

    2010-11-01

    Full Text Available Abstract Background Electromyographic signals can be used in biomedical engineering and/or rehabilitation field, as potential sources of control for prosthetics and orthotics. In such applications, digital processing techniques are necessary to follow efficient and effectively the changes in the physiological characteristics produced by a muscular contraction. In this paper, two methods based on information theory are proposed to evaluate the processing techniques. Methods These methods determine the amount of information that a processing technique is able to extract from EMG signals. The processing techniques evaluated with these methods were: absolute mean value (AMV, RMS values, variance values (VAR and difference absolute mean value (DAMV. EMG signals from the middle deltoid during abduction and adduction movement of the arm in the scapular plane was registered, for static and dynamic contractions. The optimal window length (segmentation, abduction and adduction movements and inter-electrode distance were also analyzed. Results Using the optimal segmentation (200 ms and 300 ms in static and dynamic contractions, respectively the best processing techniques were: RMS, AMV and VAR in static contractions, and only the RMS in dynamic contractions. Using the RMS of EMG signal, variations in the amount of information between the abduction and adduction movements were observed. Conclusions Although the evaluation methods proposed here were applied to standard processing techniques, these methods can also be considered as alternatives tools to evaluate new processing techniques in different areas of electrophysiology.

  15. Working Memory Capacity and Redundant Information Processing Efficiency

    Directory of Open Access Journals (Sweden)

    Michael John Endres

    2015-05-01

    Full Text Available Working memory capacity (WMC is typically measured by the amount of task-relevant information an individual can keep in mind while resisting distraction or interference from task irrelevant information. The current research investigated the extent to which differences in WMC were associated with performance on a novel redundant memory probes (RMP task that systematically varied the amount of to-be-remembered (targets and to-be-ignored (distractor information. The RMP task was designed to both facilitate and inhibit working memory search processes, as evidenced by differences in accuracy, response time, and Linear Ballistic Accumulator (LBA model estimates of information processing efficiency. Participants (N = 170 completed standard intelligence tests and dual-span WMC tasks, along with the RMP task. As expected, accuracy, response-time, and LBA model results indicated memory search and retrieval processes were facilitated under redundant- target conditions, but also inhibited under mixed target/distractor and redundant-distractor conditions. Repeated measures analyses also indicated that, while individuals classified as high (n = 85 and low (n = 85 WMC did not differ in the magnitude of redundancy effects, groups did differ in the efficiency of memory search and retrieval processes overall. Results suggest that redundant information reliably facilitates and inhibits the efficiency or speed of working memory search, and these effects are independent of more general limits and individual differences in the capacity or space of working memory.

  16. Thermodynamics of information processing based on enzyme kinetics: An exactly solvable model of an information pump

    Science.gov (United States)

    Cao, Yuansheng; Gong, Zongping; Quan, H. T.

    2015-06-01

    Motivated by the recent proposed models of the information engine [Proc. Natl. Acad. Sci. USA 109, 11641 (2012), 10.1073/pnas.1204263109] and the information refrigerator [Phys. Rev. Lett. 111, 030602 (2013), 10.1103/PhysRevLett.111.030602], we propose a minimal model of the information pump and the information eraser based on enzyme kinetics. This device can either pump molecules against the chemical potential gradient by consuming the information to be encoded in the bit stream or (partially) erase the information initially encoded in the bit stream by consuming the Gibbs free energy. The dynamics of this model is solved exactly, and the "phase diagram" of the operation regimes is determined. The efficiency and the power of the information machine is analyzed. The validity of the second law of thermodynamics within our model is clarified. Our model offers a simple paradigm for the investigating of the thermodynamics of information processing involving the chemical potential in small systems.

  17. Learning to rank for information retrieval and natural language processing

    CERN Document Server

    Li, Hang

    2014-01-01

    Learning to rank refers to machine learning techniques for training a model in a ranking task. Learning to rank is useful for many applications in information retrieval, natural language processing, and data mining. Intensive studies have been conducted on its problems recently, and significant progress has been made. This lecture gives an introduction to the area including the fundamental problems, major approaches, theories, applications, and future work.The author begins by showing that various ranking problems in information retrieval and natural language processing can be formalized as tw

  18. A proven knowledge-based approach to prioritizing process information

    Science.gov (United States)

    Corsberg, Daniel R.

    1991-01-01

    Many space-related processes are highly complex systems subject to sudden, major transients. In any complex process control system, a critical aspect is rapid analysis of the changing process information. During a disturbance, this task can overwhelm humans as well as computers. Humans deal with this by applying heuristics in determining significant information. A simple, knowledge-based approach to prioritizing information is described. The approach models those heuristics that humans would use in similar circumstances. The approach described has received two patents and was implemented in the Alarm Filtering System (AFS) at the Idaho National Engineering Laboratory (INEL). AFS was first developed for application in a nuclear reactor control room. It has since been used in chemical processing applications, where it has had a significant impact on control room environments. The approach uses knowledge-based heuristics to analyze data from process instrumentation and respond to that data according to knowledge encapsulated in objects and rules. While AFS cannot perform the complete diagnosis and control task, it has proven to be extremely effective at filtering and prioritizing information. AFS was used for over two years as a first level of analysis for human diagnosticians. Given the approach's proven track record in a wide variety of practical applications, it should be useful in both ground- and space-based systems.

  19. Industrial and agricultural process heat information user study

    Energy Technology Data Exchange (ETDEWEB)

    Belew, W.W.; Wood, B.L.; Marle, T.L.; Reinhardt, C.L.

    1981-03-01

    The results of a series of telephone interviews with groups of users of information on solar industrial and agricultural process heat (IAPH) are described. These results, part of a larger study on many different solar technologies, identify types of information each group needed and the best ways to get information to each group. In the current study only high-priority groups were examined. Results from 10 IAPH groups of respondents are analyzed in this report: IPH Researchers; APH Researchers; Representatives of Manufacturers of Concentrating and Nonconcentrating Collectors; Plant, Industrial, and Agricultural Engineers; Educators; Representatives of State Agricultural Offices; and County Extension Agents.

  20. Quantum information processing with finite resources mathematical foundations

    CERN Document Server

    Tomamichel, Marco

    2016-01-01

    This book provides the reader with the mathematical framework required to fully explore the potential of small quantum information processing devices. As decoherence will continue to limit their size, it is essential to master the conceptual tools which make such investigation possible. A strong emphasis is given to information measures that are essential for the study of devices of finite size, including Rényi entropies and smooth entropies. The presentation is self-contained and includes rigorous and concise proofs of the most important properties of these measures. The first chapters will introduce the formalism of quantum mechanics, with particular emphasis on norms and metrics for quantum states. This is necessary to explore quantum generalizations of Rényi divergence and conditional entropy, information measures that lie at the core of information theory. The smooth entropy framework is discussed next and provides a natural means to lift many arguments from information theory to the quantum setting. F...

  1. Information Processing in Nursing Information Systems: An Evaluation Study from a Developing Country.

    Science.gov (United States)

    Samadbeik, Mahnaz; Shahrokhi, Nafiseh; Saremian, Marzieh; Garavand, Ali; Birjandi, Mahdi

    2017-01-01

    In recent years, information technology has been introduced in the nursing departments of many hospitals to support their daily tasks. Nurses are the largest end user group in Hospital Information Systems (HISs). This study was designed to evaluate data processing in the Nursing Information Systems (NISs) utilized in many university hospitals in Iran. This was a cross-sectional study. The population comprised all nurse managers and NIS users of the five training hospitals in Khorramabad city ( N = 71). The nursing subset of HIS-Monitor questionnaire was used to collect the data. Data were analyzed by the descriptive-analytical method and the inductive content analysis. The results indicated that the nurses participating in the study did not take a desirable advantage of paper (2.02) and computerized (2.34) information processing tools to perform nursing tasks. Moreover, the less work experience nurses have, the further they utilize computer tools for processing patient discharge information. The "readability of patient information" and "repetitive and time-consuming documentation" were stated as the most important expectations and problems regarding the HIS by the participating nurses, respectively. The nurses participating in the present study used to utilize paper and computerized information processing tools together to perform nursing practices. Therefore, it is recommended that the nursing process redesign coincides with NIS implementation in the health care centers.

  2. Information systems for material flow management in construction processes

    Science.gov (United States)

    Mesároš, P.; Mandičák, T.

    2015-01-01

    The article describes the options for the management of material flows in the construction process. Management and resource planning is one of the key factors influencing the effectiveness of construction project. It is very difficult to set these flows correctly. The current period offers several options and tools to do this. Information systems and their modules can be used just for the management of materials in the construction process.

  3. Effect of Caffeine on Information Processing: Evidence from Stroop Task

    OpenAIRE

    Dixit, Abhinav; Goyal, Abhishek; Thawani, Rajat; Vaney, Neelam

    2012-01-01

    Background: Caffeine is a pyschostimulant present in various beverages and known to alter alertness and performance by acting on the central nervous system. Its effects on central nervous system have been studied using EEG, evoked potentials, fMRI, and neuropsychological tests. The Stroop task is a widely used tool in psychophysiology to understand the attention processes and is based on the principle that processing of two different kinds of information (like the word or colour) is parallel ...

  4. Informational and Causal Architecture of Continuous-time Renewal Processes

    Science.gov (United States)

    Marzen, Sarah; Crutchfield, James P.

    2017-07-01

    We introduce the minimal maximally predictive models (ɛ {-machines }) of processes generated by certain hidden semi-Markov models. Their causal states are either discrete, mixed, or continuous random variables and causal-state transitions are described by partial differential equations. As an application, we present a complete analysis of the ɛ {-machines } of continuous-time renewal processes. This leads to closed-form expressions for their entropy rate, statistical complexity, excess entropy, and differential information anatomy rates.

  5. The processing of information from sensors in intelligent systems

    Science.gov (United States)

    Kokovin, V. A.; Sytin, A. N.

    2017-01-01

    The article describes the processing of information obtained from sensors in intelligent systems. The paper analyzes the need of advanced treatment for a paralleling operation calculator which reduces the time of response to input events. A realization of a speculative processing algorithm in the FPGA by streaming control is based on a data flow model. This solution can be used in applications related to telecommunications networks of distributed control systems.

  6. Approaching the Affective Factors of Information Seeking: The Viewpoint of the Information Search Process Model

    Science.gov (United States)

    Savolainen, Reijo

    2015-01-01

    Introduction: The article contributes to the conceptual studies of affective factors in information seeking by examining Kuhlthau's information search process model. Method: This random-digit dial telephone survey of 253 people (75% female) living in a rural, medically under-serviced area of Ontario, Canada, follows-up a previous interview study…

  7. Energy transfer in (bio)molecular systems

    NARCIS (Netherlands)

    Milder, Maaike Theresia Wilhelmina

    This thesis reports, using a variety of optical techniques, the energy transfer pathways in different potential building blocks for molecular electronic devices, namely an antenna, a molecular wire and fluorescent switches. Using pump-probe spectroscopy the time constants of these transfer processes

  8. Designing quantum information processing via structural physical approximation.

    Science.gov (United States)

    Bae, Joonwoo

    2017-10-01

    In quantum information processing it may be possible to have efficient computation and secure communication beyond the limitations of classical systems. In a fundamental point of view, however, evolution of quantum systems by the laws of quantum mechanics is more restrictive than classical systems, identified to a specific form of dynamics, that is, unitary transformations and, consequently, positive and completely positive maps to subsystems. This also characterizes classes of disallowed transformations on quantum systems, among which positive but not completely maps are of particular interest as they characterize entangled states, a general resource in quantum information processing. Structural physical approximation offers a systematic way of approximating those non-physical maps, positive but not completely positive maps, with quantum channels. Since it has been proposed as a method of detecting entangled states, it has stimulated fundamental problems on classifications of positive maps and the structure of Hermitian operators and quantum states, as well as on quantum measurement such as quantum design in quantum information theory. It has developed efficient and feasible methods of directly detecting entangled states in practice, for which proof-of-principle experimental demonstrations have also been performed with photonic qubit states. Here, we present a comprehensive review on quantum information processing with structural physical approximations and the related progress. The review mainly focuses on properties of structural physical approximations and their applications toward practical information applications.

  9. INFORMATION TECHNOLOGIES IN THE PROCESS OF TRAINING MARITIME SPECIALISTS

    Directory of Open Access Journals (Sweden)

    Ulyana Lyashenko

    2015-10-01

    Full Text Available The article represents main questions concerning usage of the newest information-communicative technologies of maritime educational establishments in the process of training specialists of corresponding specialities; reviews the problem of training cadets of Maritime educational institutions by means of information technologies while studying professionally focused disciplines; means of implementation information technologies into the educational process and their practical usage in future professional activity on board a ship are disclosed; the importance of online communications in teaching foreign language speaking, listening comprehension, writing and test tasks implementation to control forming of cadet’s lexical, phonetic and grammar skills are proved; presentations of authentic professionally oriented materials from the newest electronic sources on lectures on disciplines «Marine diesel installations», «Power management system», «Radio-navigational devices and systems». The author of the article grounds practicability of implementation of the newest information communicative technologies into educational process in classroom and extracurricular work, cadets are given an opportunity to get authentic professionally focused information on professional discipline, to extend knowledge on these disciplines and to realize control of formation corresponding competences.

  10. Designing quantum information processing via structural physical approximation

    Science.gov (United States)

    Bae, Joonwoo

    2017-10-01

    In quantum information processing it may be possible to have efficient computation and secure communication beyond the limitations of classical systems. In a fundamental point of view, however, evolution of quantum systems by the laws of quantum mechanics is more restrictive than classical systems, identified to a specific form of dynamics, that is, unitary transformations and, consequently, positive and completely positive maps to subsystems. This also characterizes classes of disallowed transformations on quantum systems, among which positive but not completely maps are of particular interest as they characterize entangled states, a general resource in quantum information processing. Structural physical approximation offers a systematic way of approximating those non-physical maps, positive but not completely positive maps, with quantum channels. Since it has been proposed as a method of detecting entangled states, it has stimulated fundamental problems on classifications of positive maps and the structure of Hermitian operators and quantum states, as well as on quantum measurement such as quantum design in quantum information theory. It has developed efficient and feasible methods of directly detecting entangled states in practice, for which proof-of-principle experimental demonstrations have also been performed with photonic qubit states. Here, we present a comprehensive review on quantum information processing with structural physical approximations and the related progress. The review mainly focuses on properties of structural physical approximations and their applications toward practical information applications.

  11. A Petri Net-Based Software Process Model for Developing Process-Oriented Information Systems

    Science.gov (United States)

    Li, Yu; Oberweis, Andreas

    Aiming at increasing flexibility, efficiency, effectiveness, and transparency of information processing and resource deployment in organizations to ensure customer satisfaction and high quality of products and services, process-oriented information systems (POIS) represent a promising realization form of computerized business information systems. Due to the complexity of POIS, explicit and specialized software process models are required to guide POIS development. In this chapter we characterize POIS with an architecture framework and present a Petri net-based software process model tailored for POIS development with consideration of organizational roles. As integrated parts of the software process model, we also introduce XML nets, a variant of high-level Petri nets as basic methodology for business processes modeling, and an XML net-based software toolset providing comprehensive functionalities for POIS development.

  12. Big Questions Facing Vocational Psychology: A Cognitive Information Processing Perspective

    Science.gov (United States)

    Reardon, Robert C.; Lenz, Janet G.; Sampson, James P., Jr.; Peterson, Gary W.

    2011-01-01

    This article draws upon the authors' experience in developing cognitive information processing theory in order to examine three important questions facing vocational psychology and assessment: (a) Where should new knowledge for vocational psychology come from? (b) How do career theories and research find their way into practice? and (c) What is…

  13. Applying Information Processing Theory to Supervision: An Initial Exploration

    Science.gov (United States)

    Tangen, Jodi L.; Borders, L. DiAnne

    2017-01-01

    Although clinical supervision is an educational endeavor (Borders & Brown, [Borders, L. D., 2005]), many scholars neglect theories of learning in working with supervisees. The authors describe 1 learning theory--information processing theory (Atkinson & Shiffrin, 1968, 1971; Schunk, 2016)--and the ways its associated interventions may…

  14. Feedback Specificity, Information Processing, and Transfer of Training

    Science.gov (United States)

    Goodman, Jodi S.; Wood, Robert E.; Chen, Zheng

    2011-01-01

    This study examines the effects of feedback specificity on transfer of training and the mechanisms through which feedback can enhance or inhibit transfer. We used concurrent verbal protocol methodology to elicit and operationalize the explicit information processing activities used by 48 trainees performing the Furniture Factory computer…

  15. The Influence of Affect on Social-Information Processing.

    Science.gov (United States)

    Bryan, Tanis; Sullivan-Burstein, Karen; Mathur, Sarup

    1998-01-01

    A study examined the impact of four affect-induction conditions (self-induced positive affect, music-induced positive affect, music-induced negative affect, and neutral affect) on the social-information-processing skills of 96 seventh-grade students with and without learning disabilities. Students in the self-induced positive condition generated…

  16. Self-Schemata and the Processing of Attitudinal Information.

    Science.gov (United States)

    Sidera, Joseph A.; And Others

    A two-session experiment was conducted to test the relationship of self-schemata to the processing of attitudinal information. In Session I, subjects were classified as either Religious (n=20) or Legal (n=19) in their schemata, using weighted response times to personality trait words on slides. In Session II, these subjects heard one of four…

  17. Information Processing in Adolescents with Bipolar I Disorder

    Science.gov (United States)

    Whitney, Jane; Joormann, Jutta; Gotlib, Ian H.; Kelley, Ryan G.; Acquaye, Tenah; Howe, Meghan; Chang, Kiki D.; Singh, Manpreet K.

    2012-01-01

    Background: Cognitive models of bipolar I disorder (BD) may aid in identification of children who are especially vulnerable to chronic mood dysregulation. Information-processing biases related to memory and attention likely play a role in the development and persistence of BD among adolescents; however, these biases have not been extensively…

  18. Motivated information processing, social tuning, and group creativity

    NARCIS (Netherlands)

    Bechtoldt, Myriam N.; De Dreu, Carsten K. W.; Nijstad, Bernard A.; Choi, Hoon-Seok

    2010-01-01

    The extent to which groups are creative has wide implications for their overall performance, including the quality of their problem solutions, judgments, and decisions. To further understanding of group creativity, we integrate the motivated information processing in groups model (De Dreu, Nijstad,

  19. Why genetic information processing could have a quantum basis

    Indian Academy of Sciences (India)

    Unknown

    4 nucleotide bases and 20 amino acids, as optimal solutions of the molecular assembly process. Experiments should be able to tell ... the parent to the offspring, sensory information conveyed by the sense organ to the brain, ... always similar to the old one, and not a completely differ- ent one. In principle, large changes can ...

  20. Speed of Information Processing in a Calculating Prodigy.

    Science.gov (United States)

    Jensen, Arthur R.

    1990-01-01

    The performance on a battery of cognitive tests of an individual with extraordinary ability at mental arithmetic was studied. Implications of the rather ordinary test performance of Shakuntala Devi in contrast with her calculating speed are discussed with reference to memory and information processing. (SLD)

  1. Risk Informed Design as Part of the Systems Engineering Process

    Science.gov (United States)

    Deckert, George

    2010-01-01

    This slide presentation reviews the importance of Risk Informed Design (RID) as an important feature of the systems engineering process. RID is based on the principle that risk is a design commodity such as mass, volume, cost or power. It also reviews Probabilistic Risk Assessment (PRA) as it is used in the product life cycle in the development of NASA's Constellation Program.

  2. Group creativity and innovation: a motivated information processing perspective

    NARCIS (Netherlands)

    de Dreu, C.K.W.; Nijstad, B.A.; Bechtoldt, M.N.; Baas, M.

    2011-01-01

    The authors review the Motivated Information Processing in Groups Model (De Dreu, Nijstad, & Van Knippenberg, 2008) to understand group creativity and innovation. Although distinct phenomena, group creativity and innovation are both considered a function of epistemic motivation (EM; the degree to

  3. Ethnic Bias in Counseling: An Information Processing Approach.

    Science.gov (United States)

    Wampold, Bruce E.; And Others

    1981-01-01

    Measured the impact of counselor trainee stereotyping of ethnic groups. Anglo-American and minority counseling psychology students made judgments about the relationship between ethnicity and stereotypic characteristics. Findings suggest Anglo-American trainees were more susceptable to the influence of stereotypes when processing information about…

  4. Construction Of A Computerised Information-Processing Test Battery

    Directory of Open Access Journals (Sweden)

    Johann M. Schepers

    2002-09-01

    Full Text Available The primary goal of the study was to construct a computerised information-processing test battery to measure choice reaction time for up to and including six bits of information, to measure discrimination reaction time with regard to colour patterns and form patterns, to measure rate of information processing with regard to perceptual stimuli and conceptual reasoning, and to develop a suitable scoring system for the respective tests. The battery of tests was applied to 58 pilots. Opsomming Die hoofdoel van die studie was om ‘n gerekenariseerde inligtingverwerkingstoets-battery te konstrueer om keusereaksietyd tot en met ses bis inligting te meet, om diskriminasie-reaksietyd ten opsigte van kleurpatrone en vormpatrone te meet, om tempo van inligtingverwerking ten opsigte van perseptuele stimuli en konseptuele redenering te meet en om ‘n gepaste nasienstelsel vir die onderskeie toetse te ontwikkel. Die battery toetse is op 58 vlieëniers toegepas

  5. Resolution-Adapted All-Atomic and Coarse-Grained Model for Biomolecular Simulations.

    Science.gov (United States)

    Shen, Lin; Hu, Hao

    2014-06-10

    We develop here an adaptive multiresolution method for the simulation of complex heterogeneous systems such as the protein molecules. The target molecular system is described with the atomistic structure while maintaining concurrently a mapping to the coarse-grained models. The theoretical model, or force field, used to describe the interactions between two sites is automatically adjusted in the simulation processes according to the interaction distance/strength. Therefore, all-atomic, coarse-grained, or mixed all-atomic and coarse-grained models would be used together to describe the interactions between a group of atoms and its surroundings. Because the choice of theory is made on the force field level while the sampling is always carried out in the atomic space, the new adaptive method preserves naturally the atomic structure and thermodynamic properties of the entire system throughout the simulation processes. The new method will be very useful in many biomolecular simulations where atomistic details are critically needed.

  6. Information processing by networks of quantum decision makers

    Science.gov (United States)

    Yukalov, V. I.; Yukalova, E. P.; Sornette, D.

    2018-02-01

    We suggest a model of a multi-agent society of decision makers taking decisions being based on two criteria, one is the utility of the prospects and the other is the attractiveness of the considered prospects. The model is the generalization of quantum decision theory, developed earlier for single decision makers realizing one-step decisions, in two principal aspects. First, several decision makers are considered simultaneously, who interact with each other through information exchange. Second, a multistep procedure is treated, when the agents exchange information many times. Several decision makers exchanging information and forming their judgment, using quantum rules, form a kind of a quantum information network, where collective decisions develop in time as a result of information exchange. In addition to characterizing collective decisions that arise in human societies, such networks can describe dynamical processes occurring in artificial quantum intelligence composed of several parts or in a cluster of quantum computers. The practical usage of the theory is illustrated on the dynamic disjunction effect for which three quantitative predictions are made: (i) the probabilistic behavior of decision makers at the initial stage of the process is described; (ii) the decrease of the difference between the initial prospect probabilities and the related utility factors is proved; (iii) the existence of a common consensus after multiple exchange of information is predicted. The predicted numerical values are in very good agreement with empirical data.

  7. THE IMPORTANCE OF THE ACCOUNTING INFORMATION FOR THE DECISIONAL PROCESS

    Directory of Open Access Journals (Sweden)

    Chiriac Silviu

    2014-07-01

    development of the company. The accounting information is the raw material for the decisional process. The accounting decisions lead to elaborating all the other types of decisions that help achieving the main goal of the management: continuing the activity. In our oppinion the informational resources of an entity can be part of the asset, the economic information being a precious resource. If used efficiently it can be used to achieve the goals. Any business idea, designing a new concept or tranzaction, have one thing as base: information.

  8. The visual illustration of complex process information during abnormal incidents

    International Nuclear Information System (INIS)

    Heimbuerger, H.; Kautto, A.; Norros, L.; Ranta, J.

    1985-01-01

    One of the proposed solutions to the man-process interface problem in nuclear power plants is the integration of a system in the control room that can provide the operator with a display of a minimum set of critical plant parameters defining the safety status of the plant. Such a system has been experimentally validated using the Loviisa training simulator during the fall of 1982. The project was a joint effort between Combustion Engineering Inc., the Halden Reactor Project, Imatran Voima Oy and VTT. Alarm systems are used in nuclear power plants to tell the control room operators that an unexpected change in the plant operation state has occurred. One difficulty in using the alarms for checking the actions of the operator is that the conventional way of realizing the alarm systems implies that several alarms are active also during normal operation. The coding and representation of alarm information will be discussed in the paper. An important trend in control room design is the move away from direct, concrete indication of process parameters towards use of more abstract/logical representation of information as a basis for plant supervision. Recent advances in computer graphics provide the possibility that, in the future, visual information will be utilized to make the essential dynamics of the process more intelligible. A set of criteria for use of visual information will be necessary. The paper discusses practical aspects for the realisation of such criteria in the context of nuclear power plant. The criteria of the decomposition of the process information concerning the sub-goals safety and availability and also the tentative results of the conceptualization of a PWR-process are discussed in the paper

  9. The cognitive viewpoint on information science and processing information in cognitive psychology - a vision for interdisciplinary

    Directory of Open Access Journals (Sweden)

    Shirley Guimarães Pimenta

    2012-08-01

    Full Text Available The interaction amongst the ‘user’, ‘information’, and ‘text’ is of interest to Information Science although it has deserved insufficient attention in the literature. This issue is addressed by this paper whose main purpose is to contribute to the discussion of theoretical affinity between the cognitive viewpoint in Information Science and the information processing approach in Cognitive Psychology. Firstly, the interdisciplinary nature of Information Science is discussed and justified as a means to deepen and strengthen its theoretical framework. Such interdisciplinarity helps to avoid stagnation and keep pace with other disciplines. Secondly, the discussion takes into consideration the cognitive paradigm, which originates the cognitive viewpoint approach in Information Science. It is highlighted that the cognitive paradigm represented a change in the Social Sciences due to the shift of focus from the object and the signal to the individual. Besides that, it sheds light to the notion of models of worlds, i.e., the systems of categories and concepts that guide the interaction between the individual and his/her environment. Thirdly, the theoretical assumptions of the cognitive viewpoint approach are discussed, with emphasis on the concept of ‘information’, as resulting of cognitive processes and as related to the notion of ‘text’. This approach points out the relevance of understanding the interaction amongst users, information, and text. However, it lacks further development. Using notions which are common to both approaches, some of the gaps can be fulfilled. Finally, the concept of ‘text’, its constituents and structures are presented from the perspective of text comprehension models and according to the information processing approach. As a concluding remark, it is suggested that bringing together the cognitive viewpoint and the information processing approach can be enriching and fruitful to the both Information

  10. Making Information Useful: Engagement in the National Climate Assessment Process

    Science.gov (United States)

    Lough, G. C.; Cloyd, E.

    2014-12-01

    Creation of actionable information requires that the producers of that information understand the needs of the intended users and decision makers. To that end, development of the Third National Climate Assessment included a focus on engaging users through an inclusive, broad-based, and sustained process. Such a process provides opportunities for scientific experts and decision makers to share knowledge about the climate-related issues, impacts, and potential response actions that are most important in a particular region or sector. Such a process is also highly transparent in order to produce results that are credible, salient, and legitimate for both scientists and decision makers, ultimately making the results extremely useful. To implement these principles for the recent NCA, a broad-based engagement strategy was implemented from the start of the process. The strategy invited participation from users and stakeholder communities at each stage of the process, and considered methods for communicating with potential users at every step. The strategy was designed to elicit contributions to help shape the framing of the assessment, improve the transparency of the process, and increase the utility of the final information. Specific user inputs were gathered through a series of workshops, public comment opportunities, town hall meetings, presentations, requests for information, submitted documents, and open meetings. Further, a network of contributors self-organized around topics of interest to extend the NCA to a wider range of user groups. Here, we describe the outcomes of these innovations in assessment engagement and identify clear successes, notable surprises, future evaluation needs, and areas for new ideas.

  11. Statistical process control based chart for information systems security

    Science.gov (United States)

    Khan, Mansoor S.; Cui, Lirong

    2015-07-01

    Intrusion detection systems have a highly significant role in securing computer networks and information systems. To assure the reliability and quality of computer networks and information systems, it is highly desirable to develop techniques that detect intrusions into information systems. We put forward the concept of statistical process control (SPC) in computer networks and information systems intrusions. In this article we propose exponentially weighted moving average (EWMA) type quality monitoring scheme. Our proposed scheme has only one parameter which differentiates it from the past versions. We construct the control limits for the proposed scheme and investigate their effectiveness. We provide an industrial example for the sake of clarity for practitioner. We give comparison of the proposed scheme with EWMA schemes and p chart; finally we provide some recommendations for the future work.

  12. Model choice considerations and information integration using analytical hierarchy process

    Energy Technology Data Exchange (ETDEWEB)

    Langenbrunner, James R [Los Alamos National Laboratory; Hemez, Francois M [Los Alamos National Laboratory; Booker, Jane M [BOOKER SCIENTIFIC; Ross, Timothy J. [UNM

    2010-10-15

    Using the theory of information-gap for decision-making under severe uncertainty, it has been shown that model output compared to experimental data contains irrevocable trade-offs between fidelity-to-data, robustness-to-uncertainty and confidence-in-prediction. We illustrate a strategy for information integration by gathering and aggregating all available data, knowledge, theory, experience, similar applications. Such integration of information becomes important when the physics is difficult to model, when observational data are sparse or difficult to measure, or both. To aggregate the available information, we take an inference perspective. Models are not rejected, nor wasted, but can be integrated into a final result. We show an example of information integration using Saaty's Analytic Hierarchy Process (AHP), integrating theory, simulation output and experimental data. We used expert elicitation to determine weights for two models and two experimental data sets, by forming pair-wise comparisons between model output and experimental data. In this way we transform epistemic and/or statistical strength from one field of study into another branch of physical application. The price to pay for utilizing all available knowledge is that inferences drawn for the integrated information must be accounted for and the costs can be considerable. Focusing on inferences and inference uncertainty (IU) is one way to understand complex information.

  13. Supramolecular photochemistry of drugs in biomolecular environments.

    Science.gov (United States)

    Monti, Sandra; Manet, Ilse

    2014-06-21

    In this tutorial review we illustrate how the interaction of photoactive drugs/potential drugs with proteins or DNA in supramolecular complexes can determine the course of the reactions initiated by the drug absorbed photons, evidencing the mechanistic differences with respect to the solution conditions. We focus on photoprocesses, independent of oxygen, that lead to chemical modification of the biomolecules, with formation of new covalent bonds or cleavage of existing bonds. Representative systems are mainly selected from the literature of the last decade. The photoreactivity of some aryl propionic acids, (fluoro)quinolones, furocoumarins, metal coordination complexes, quinine-like compounds, naphthaleneimides and pyrenyl-peptides with proteins or DNA is discussed. The use of light for biomolecule photomodification, historically relevant to biological photosensitization processes and some forms of photochemotherapy, is nowadays becoming more and more important in the development of innovative methods in nanomedicine and biotechnology.

  14. Machine Learning of Biomolecular Reaction Coordinates.

    Science.gov (United States)

    Brandt, Simon; Sittel, Florian; Ernst, Matthias; Stock, Gerhard

    2018-04-09

    We present a systematic approach to reduce the dimensionality of a complex molecular system. Starting with a data set of molecular coordinates (obtained from experiment or simulation) and an associated set of metastable conformational states (obtained from clustering the data), a supervised machine learning model is trained to assign unknown molecular structures to the set of metastable states. In this way, the model learns to determine the features of the molecular coordinates that are most important to discriminate the states. Using a new algorithm that exploits this feature importance via an iterative exclusion principle, we identify the essential internal coordinates (such as specific interatomic distances or dihedral angles) of the system, which are shown to represent versatile reaction coordinates that account for the dynamics of the slow degrees of freedom and explain the mechanism of the underlying processes. Moreover, these coordinates give rise to a free energy landscape that may reveal previously hidden intermediate states of the system.

  15. Promoting information diffusion through interlayer recovery processes in multiplex networks

    Science.gov (United States)

    Wang, Xin; Li, Weihua; Liu, Longzhao; Pei, Sen; Tang, Shaoting; Zheng, Zhiming

    2017-09-01

    For information diffusion in multiplex networks, the effect of interlayer contagion on spreading dynamics has been explored in different settings. Nevertheless, the impact of interlayer recovery processes, i.e., the transition of nodes to stiflers in all layers after they become stiflers in any layer, still remains unclear. In this paper, we propose a modified ignorant-spreader-stifler model of rumor spreading equipped with an interlayer recovery mechanism. We find that the information diffusion can be effectively promoted for a range of interlayer recovery rates. By combining the mean-field approximation and the Markov chain approach, we derive the evolution equations of the diffusion process in two-layer homogeneous multiplex networks. The optimal interlayer recovery rate that achieves the maximal enhancement can be calculated by solving the equations numerically. In addition, we find that the promoting effect on a certain layer can be strengthened if information spreads more extensively within the counterpart layer. When applying the model to two-layer scale-free multiplex networks, with or without degree correlation, similar promoting effect is also observed in simulations. Our work indicates that the interlayer recovery process is beneficial to information diffusion in multiplex networks, which may have implications for designing efficient spreading strategies.

  16. Recruiting for Epigenetic Research: Facilitating the Informed Consent Process

    Directory of Open Access Journals (Sweden)

    Nancy Jallo

    2013-01-01

    Full Text Available Because the effects of epigenetic (gene-environment interaction changes have been associated with numerous adverse health states, the study of epigenetic measures provides exciting research opportunities for biobehavioral scientists. However, recruitment for studies focusing on any aspect of genetics poses challenges. Multiple factors, including lack of knowledge regarding a research study, have been identified as barriers to recruitment. Strengthening the informed consent process through extended discussion has been found to be effective in recruiting for research studies in general, yet there is a paucity of information that focused on such a recruitment strategy for epigenetic studies. In this paper, we share our experiences with strategies to strengthen the informed consent process as well as provide samples of materials developed to heighten potential participants’ understanding of epigenetics, in 4 epigenetic research studies with women from diverse backgrounds experiencing a range of health issues. The combined enrollment success rate for epigenetic studies using the process was 89% with participants representing a diverse population. We posit that carefully developed recruitment scripts provided a foundation for improving potential participants’ understanding of the research project. Easy to understand illustrations of the epigenetic process provided a basis for active engagement and encouraged individual questions.

  17. Aging, culture, and memory for categorically processed information.

    Science.gov (United States)

    Yang, Lixia; Chen, Wenfeng; Ng, Andy H; Fu, Xiaolan

    2013-11-01

    Literature on cross-cultural differences in cognition suggests that categorization, as an information processing and organization strategy, was more often used by Westerners than by East Asians, particularly for older adults. This study examines East-West cultural differences in memory for categorically processed items and sources in young and older Canadians and native Chinese with a conceptual source memory task (Experiment 1) and a reality monitoring task (Experiment 2). In Experiment 1, participants encoded photographic faces of their own ethnicity that were artificially categorized into GOOD or EVIL characters and then completed a source memory task in which they identified faces as old-GOOD, old-EVIL, or new. In Experiment 2, participants viewed a series of words, each followed either by a corresponding image (i.e., SEEN) or by a blank square within which they imagined an image for the word (i.e., IMAGINED). At test, they decided whether the test words were old-SEEN, old-IMAGINED, or new. In general, Canadians outperformed Chinese in memory for categorically processed information, an effect more pronounced for older than for young adults. Extensive exercise of culturally preferred categorization strategy differentially benefits Canadians and reduces their age group differences in memory for categorically processed information.

  18. Characterization of four wild edible Carduus species from the Mediterranean region via phytochemical and biomolecular analyses.

    Science.gov (United States)

    Marengo, Arianna; Maxia, Andrea; Sanna, Cinzia; Bertea, Cinzia M; Bicchi, Carlo; Ballero, Mauro; Cagliero, Cecilia; Rubiolo, Patrizia

    2017-10-01

    Carduus species (Compositae) are widely distributed in the Mediterranean area, and traditionally used for both food and medicinal purposes. The hydroalcoholic extracts of four wild edible Carduus species collected in Sardinia (Carduus argyroa Biv., Carduus nutans subsp. macrocephalus (Desf.) Nyman, Carduus pycnocephalus L., Carduus cephalanthus Viv.) were analyzed and characterized by HPLC-PDA-MS/MS and PCR-RFLP of the nrDNA internal transcribed spacer (ITS). Flavonoids and caffeoylquinic acid derivatives were the predominant classes of secondary metabolites characterizing the extracts. The ITS region was sequenced in parallel, and a PCR-RFLP method was applied with three selective restriction enzymes. Statistical analyses, on both chemical and biomolecular results, revealed that individuals clustered according to their taxonomic classification. The combination of the two techniques discriminates the four species within the genus, giving further information on these little-investigated plants, traditionally used in the Mediterranean area and in Sardinia. Copyright © 2017 Elsevier Ltd. All rights reserved.

  19. Random Matrices for Information Processing – A Democratic Vision

    DEFF Research Database (Denmark)

    Cakmak, Burak

    The thesis studies three important applications of random matrices to information processing. Our main contribution is that we consider probabilistic systems involving more general random matrix ensembles than the classical ensembles with iid entries, i.e. models that account for statistical...... dependence between the entries. Specifically, the involved matrices are invariant or fulfill a certain asymptotic freeness condition as their dimensions grow to infinity. Informally speaking, all latent variables contribute to the system model in a democratic fashion – there are no preferred latent variables...

  20. Biomolecular Characterization of Putative Antidiabetic Herbal Extracts

    Science.gov (United States)

    Stadlbauer, Verena; Haselgrübler, Renate; Lanzerstorfer, Peter; Plochberger, Birgit; Borgmann, Daniela; Jacak, Jaroslaw; Winkler, Stephan M.; Schröder, Klaus; Höglinger, Otmar; Weghuber, Julian

    2016-01-01

    Induction of GLUT4 translocation in the absence of insulin is considered a key concept to decrease elevated blood glucose levels in diabetics. Due to the lack of pharmaceuticals that specifically increase the uptake of glucose from the blood circuit, application of natural compounds might be an alternative strategy. However, the effects and mechanisms of action remain unknown for many of those substances. For this study we investigated extracts prepared from seven different plants, which have been reported to exhibit anti-diabetic effects, for their GLUT4 translocation inducing properties. Quantitation of GLUT4 translocation was determined by total internal reflection fluorescence (TIRF) microscopy in insulin sensitive CHO-K1 cells and adipocytes. Two extracts prepared from purslane (Portulaca oleracea) and tindora (Coccinia grandis) were found to induce GLUT4 translocation, accompanied by an increase of intracellular glucose concentrations. Our results indicate that the PI3K pathway is mainly responsible for the respective translocation process. Atomic force microscopy was used to prove complete plasma membrane insertion. Furthermore, this approach suggested a compound mediated distribution of GLUT4 molecules in the plasma membrane similar to insulin stimulated conditions. Utilizing a fluorescent actin marker, TIRF measurements indicated an impact of purslane and tindora on actin remodeling as observed in insulin treated cells. Finally, in-ovo experiments suggested a significant reduction of blood glucose levels under tindora and purslane treated conditions in a living organism. In conclusion, this study confirms the anti-diabetic properties of tindora and purslane, which stimulate GLUT4 translocation in an insulin-like manner. PMID:26820984

  1. Information Systems’ Portfolio: Contributions of Enterprise and Process Architecture

    Directory of Open Access Journals (Sweden)

    Silvia Fernandes

    2017-09-01

    Full Text Available We are witnessing a need for a quick and intelligent reaction from organizations to the level and speed of change in business processes.New information technologies and systems (IT/IS are challenging business models and products. One of the great shakes comes from the online and/or mobile apps and platforms.These are having a tremendous impact in launching innovative and competitive services through the combination of digital and physical features. This leads to actively rethink enterprise information systems’ portfolio, its management and suitability. One relevant way for enterprises to manage their IT/IS in order to cope with those challenges is enterprise and process architecture. A decision-making culture based on processes helps to understand and define the different elements that shape an organization and how those elements inter-relate inside and outside it. IT/IS portfolio management requires an increasing need of modeling data and process flows for better discerning and acting at its selection and alignment with business goals. The new generation of enterprise architecture (NGEA helps to design intelligent processes that answer quickly and creatively to new and challenging trends. This has to be open, agile and context-aware to allow well-designed services that match users’ expectations. This study includes two real cases/problems to solve quickly in companies and solutions are presented in line with this architectural approach.

  2. The basics of IT audit purposes, processes, and practical information

    CERN Document Server

    Gantz, Stephen D

    2013-01-01

    The Basics of IT Audit: Purposes, Processes, and Practical Information provides you with a thorough, yet concise overview of IT auditing. Packed with specific examples, this book gives insight into the auditing process and explains regulations and standards such as the ISO-27000, series program, CoBIT, ITIL, Sarbanes-Oxley, and HIPPA. IT auditing occurs in some form in virtually every organization, private or public, large or small. The large number and wide variety of laws, regulations, policies, and industry standards that call for IT auditing make it hard for organizations to consistent

  3. Specificity, promiscuity, and the structure of complex information processing networks

    Science.gov (United States)

    Myers, Christopher

    2006-03-01

    Both the top-down designs of engineered systems and the bottom-up serendipities of biological evolution must negotiate tradeoffs between specificity and control: overly specific interactions between components can make systems brittle and unevolvable, while more generic interactions can require elaborate control in order to aggregate specificity from distributed pieces. Complex information processing systems reveal network organizations that navigate this landscape of constraints: regulatory and signaling networks in cells involve the coordination of molecular interactions that are surprisingly promiscuous, and object-oriented design in software systems emphasizes the polymorphic composition of objects of minimal necessary specificity [C.R. Myers, Phys Rev E 68, 046116 (2003)]. Models of information processing arising both in systems biology and engineered computation are explored to better understand how particular network organizations can coordinate the activity of promiscuous components to achieve robust and evolvable function.

  4. STAR-GENERIS - a software package for information processing

    International Nuclear Information System (INIS)

    Felkel, L.

    1985-01-01

    Man-machine-communication in electrical power plants is increasingly based on the capabilities of minicomputers. Rather than just displaying raw process data more complex processing is done to aid operators by improving information quality. Advanced operator aids for nuclear power plants are, e.g. alarm reduction, disturbance analysis and expert systems. Operator aids use complex combinations and computations of plant signals, which have to be described in a formal and homogeneous way. The design of such computer-based information systems requires extensive software and engineering efforts. The STAR software concept reduces the software effort to a minimum by proving an advanced program package which facilitates specification and implementation of engineering know-how necessary for sophisticated operator aids. (orig./HP) [de

  5. Thermal coupling at aqueous and biomolecular interfaces

    Science.gov (United States)

    Shenogina, Natalia B.

    Heat flow in the materials with nanoscopic features is dominated by thermal properties of the interfaces. While thermal properties of the solid-solid and solid-liquid interfaces are well studied, research of the thermal transport properties across soft (liquid-liquid) interfaces is very limited. Such interfaces are, however, plentiful in biological systems. In such systems the temperature control is of a great importance, because biochemical reactions, conformation of biomolecules as well as processes in biological cells and membranes have strong temperature sensitivity. The critical ingredient to temperature control in biological systems is the understanding of heat flow and thermal coupling across soft interfaces. To investigate heat transfer across biological and aqueous interfaces we chose to study a number of soft interfacial systems by means of molecular dynamic simulations. One of the interfaces under our investigation is the interface between protein (specifically green fluorescent protein) and water. Using this model we concentrated on the importance of vibrational frequency on coupling between water and proteins, and on significant differences between the roles of low and high frequency vibrations. Our thermal interfacial analysis allowed us to shed new light on to the issue of protein to water slaving, i.e., the concept of water controlling protein dynamics. Considering that the surface of the protein is composed of a complicated mixture of the hydrophobic and hydrophilic domains, to systematically explore the role of interfacial interactions we studied less complicated models with homogenous interfaces whith interfacial chemistry that could be changed in a controlled manner. We demonstrated that thermal transport measurements can be used to probe interfacial environments and to quantify interfacial bonding strength. Such ability provides a unique opportunity to characterize a variety of interfaces, which can be difficult to achieve with more direct

  6. A Review on Sensor, Signal, and Information Processing Algorithms (PREPRINT)

    Science.gov (United States)

    2010-01-01

    use for estimating speech intelligibility in auditoria , Journal of the Acoustical Society of America 77 (1985) 1069–1077. [68] A. Spanias, Speech...detection under communication constraints, in: IEEE Interna - tional Symposium on Information Theory, 1995. [78] C. Yu, P. Varshney, Bit allocation for...Processing 55 (5, Part 1) (2007) 1634–1643. [107] J. Karlsson, N. Wernersson, M. Skoglund, Distributed scalar quantizers for noisy channels, in: IEEE Interna

  7. Olfactory Information Processing in the Drosophila Antennal Lobe : Anything Goes?

    OpenAIRE

    Silbering, Ana F.; Okada, Ryuichi; Ito, Kei; Galizia, Cosmas Giovanni

    2008-01-01

    When an animal smells an odor, olfactory sensory neurons generate an activity pattern across olfactory glomeruli of the first sensory neuropil, the insect antennal lobe or the vertebrate olfactory bulb. Here, several networks of local neurons interact with sensory neurons and with output neurons-insect projection neurons, or vertebrate mitral/tufted cells. The extent and form of information processing taking place in these local networks has been subject of controversy. To investigate the ro...

  8. Polarization preserving ultra fast optical shutter for quantum information processing

    OpenAIRE

    Spagnolo, Nicolo'; Vitelli, Chiara; Giacomini, Sandro; Sciarrino, Fabio; De Martini, Francesco

    2008-01-01

    We present the realization of a ultra fast shutter for optical fields, which allows to preserve a generic polarization state, based on a self-stabilized interferometer. It exhibits high (or low) transmittivity when turned on (or inactive), while the fidelity of the polarization state is high. The shutter is realized through two beam displacing prisms and a longitudinal Pockels cell. This can represent a useful tool for controlling light-atom interfaces in quantum information processing.

  9. A study on intellectual system for musical information processing

    OpenAIRE

    Liu, Jianli

    2001-01-01

    Music analysis is important for correctly understanding music and its performance. It plays one of the most important roles in a musical information processing system. Musical structures are the fundamentals of computer performance. According to the Phrasing theory, several levels of structures like motif, phrase, and sentence compose a musical work. These occurrences are the basic components of the piece. Musical expressions are associated with these structures. In order to generate expressi...

  10. Quantum information processing using designed defect states in

    DEFF Research Database (Denmark)

    Pedersen, Jesper; Flindt, Christian; Mortensen, Niels Asger

    2007-01-01

    We propose a new physical implementation of spin qubits for quantum information processing, namely defect states in antidot lattices de¯ned in the two-dimensional electron gas at a semiconductor heterostructure. Calculations of the band structure of the periodic antidot lattice are presented. A p......-coupled defect states is calculated numerically.We ¯nd results reminiscent of double quantum dot structures, indicating that the suggested structure is a feasible physical implementation of spin qubits....

  11. Advancements on Radar Polarization Information Acquisition and Processing

    Directory of Open Access Journals (Sweden)

    Dai Dahai

    2016-04-01

    Full Text Available The study on radar polarization information acquisition and processing has currently been one important part of radar techniques. The development of the polarization theory is simply reviewed firstly. Subsequently, some key techniques which include polarization measurement, polarization anti-jamming, polarization recognition, imaging and parameters inversion using radar polarimetry are emphatically analyzed in this paper. The basic theories, the present states and the development trends of these key techniques are presented and some meaningful conclusions are derived.

  12. Advanced information processing system: Input/output network management software

    Science.gov (United States)

    Nagle, Gail; Alger, Linda; Kemp, Alexander

    1988-01-01

    The purpose of this document is to provide the software requirements and specifications for the Input/Output Network Management Services for the Advanced Information Processing System. This introduction and overview section is provided to briefly outline the overall architecture and software requirements of the AIPS system before discussing the details of the design requirements and specifications of the AIPS I/O Network Management software. A brief overview of the AIPS architecture followed by a more detailed description of the network architecture.

  13. Army Information Technology Procurement: A Business Process Analysis

    Science.gov (United States)

    2015-03-27

    Education and Training Command In Partial Fulfillment of the Requirements for the Degree of Master of Science in Engineering Management...Brent Langhals, Lt Col, USAF Member John Elshaw, PhD Member Abstract The integration of Information and Communication Technology ( ICT ...the lack transparency in how resources are allocated. This thesis presents a business process analysis of the Army’s ICT procurement system. The

  14. The Use of Multimedia in the Informed Consent Process

    Science.gov (United States)

    Jimison, Holly B.; Sher, Paul P.; Appleyard, Richard; LeVernois, Yvonne

    1998-01-01

    Abstract Objective: The goal of the project was to create recommendations and design specifications for a multimedia tool to enhance the informed consent process for clinical trials. The authors focused on the needs of patients with potential cognitive impairment. Design: The authors first performed a needs assessment using focus groups and interviews with health care researchers, institutional review board members, and three groups of patients (who had depression, breast cancer, or schizophrenia). Their feedback was incorporated into the design of a prototype multimedia tool. The design included general modules with information about clinical trials and informed consent as well as trial-specific modules. The authors then used the resulting prototype multimedia tool for informed consent in follow-up focus groups and interviews to obtain feedback on the feasibility and potential effectiveness of using such a tool routinely for clinical trials. Results: The authors showed that it was feasible to adapt a structured multimedia informed consent system to a specific clinical trial and to incorporate techniques to improve the understandability of informed consent content. Patients generally felt the prototype system was useful and could replace the paper document. They felt using the system would be less stressful, because they would have a greater sense of control and could proceed at their own pace. They liked the hierarchic and modular approach to providing information and felt that the use of video made information more understandable. Researchers and institutional review board members also found the system to be valuable in these ways but had concerns about how to review the system for potential biases in presentation and about the legal issues associated with replacing the paper document. PMID:9609494

  15. Catechol-Based Hydrogel for Chemical Information Processing

    Directory of Open Access Journals (Sweden)

    Eunkyoung Kim

    2017-07-01

    Full Text Available Catechols offer diverse properties and are used in biology to perform various functions that range from adhesion (e.g., mussel proteins to neurotransmission (e.g., dopamine, and mimicking the capabilities of biological catechols have yielded important new materials (e.g., polydopamine. It is well known that catechols are also redox-active and we have observed that biomimetic catechol-modified chitosan films are redox-active and possess interesting molecular electronic properties. In particular, these films can accept, store and donate electrons, and thus offer redox-capacitor capabilities. We are enlisting these capabilities to bridge communication between biology and electronics. Specifically, we are investigating an interactive redox-probing approach to access redox-based chemical information and convert this information into an electrical modality that facilitates analysis by methods from signal processing. In this review, we describe the broad vision and then cite recent examples in which the catechol–chitosan redox-capacitor can assist in accessing and understanding chemical information. Further, this redox-capacitor can be coupled with synthetic biology to enhance the power of chemical information processing. Potentially, the progress with this biomimetic catechol–chitosan film may even help in understanding how biology uses the redox properties of catechols for redox signaling.

  16. Dynamic Volume Holography and Optical Information Processing by Raman Scattering

    International Nuclear Information System (INIS)

    Dodin, I.Y.; Fisch, N.J.

    2002-01-01

    A method of producing holograms of three-dimensional optical pulses is proposed. It is shown that both the amplitude and the phase profile of three-dimensional optical pulse can be stored in dynamic perturbations of a Raman medium, such as plasma. By employing Raman scattering in a nonlinear medium, information carried by a laser pulse can be captured in the form of a slowly propagating low-frequency wave that persists for a time large compared with the pulse duration. If such a hologram is then probed with a short laser pulse, the information stored in the medium can be retrieved in a second scattered electromagnetic wave. The recording and retrieving processes can conserve robustly the pulse shape, thus enabling the recording and retrieving with fidelity of information stored in optical signals. While storing or reading the pulse structure, the optical information can be processed as an analogue or digital signal, which allows simultaneous transformation of three-dimensional continuous images or computing discrete arrays of binary data. By adjusting the phase fronts of the reference pulses, one can also perform focusing, redirecting, and other types of transformation of the output pulses

  17. Communicating climate information: travelling through the decision-making process

    International Nuclear Information System (INIS)

    Stoverinck, F.; Dubois, G.; Amelung, B.

    2013-01-01

    Climate change forces society to adapt. Adaptation strategies are preferably based on the best available climate information. Climate projections, however, often inform adaptation strategies after being interpreted once or several times. This process affects the original message put forward by climate scientists when presenting the basic climate projections, in particular regarding uncertainties. The nature of this effect and its implications for decision-making are as yet poorly understood. This paper explores the nature and consequences of a) the communication tools used by scientists and experts, and b)changes in the communicated information as it travels through the decision-making process. It does so by analysing the interpretative steps taken in a sample of 25 documents, pertaining to the field of public policies for climate change impact assessment and adaptation strategies. Five phases in the provisioning of climate information are distinguished: pre-existing knowledge (i.e. climate models and data), climate- change projection, impact assessment, adaptation strategy, and adaptation plan. Between the phases, climate information is summarized and synthesised in order to be passed on. The results show that in the sample information on uncertainty is under-represented: e.g. studies focus on only one scenario, and/or disregard probability distributions. In addition, visualization tools are often used ineffectively, leading to confusion and unintended interpretations. Several recommendations are presented. A better training of climatologists to communication issues, but also a training to climatology for decision makers are required, as well as more cautious and robust adaptation strategies, accounting for the uncertainty inherent to climate projections. (authors)

  18. What do information reuse and automated processing require in engineering design? Semantic process

    Directory of Open Access Journals (Sweden)

    Ossi Nykänen

    2011-12-01

    Full Text Available Purpose: The purpose of this study is to characterize, analyze, and demonstrate machine-understandable semantic process for validating, integrating, and processing technical design information. This establishes both a vision and tools for information reuse and semi-automatic processing in engineering design projects, including virtual machine laboratory applications with generated components.Design/methodology/approach: The process model has been developed iteratively in terms of action research, constrained by the existing technical design practices and assumptions (design documents, expert feedback, available technologies (pre-studies and experiments with scripting and pipeline tools, benchmarking with other process models and methods (notably the RUP and DITA, and formal requirements (computability and the critical information paths for the generated applications. In practice, the work includes both quantitative and qualitative components.Findings: Technical design processes may be greatly enhanced in terms of semantic process thinking, by enriching design information, and automating information validation and transformation tasks. Contemporary design information, however, is mainly intended for human consumption, and needs to be explicitly enriched with the currently missing data and interfaces. In practice, this may require acknowledging the role of technical information or knowledge engineer, to lead the development of the semantic design information process in a design organization. There is also a trade-off between machine-readability and system complexity that needs to be studied further, both empirically and in theory.Research limitations/implications: The conceptualization of the semantic process is essentially an abstraction based on the idea of progressive design. While this effectively allows implementing semantic processes with, e.g., pipeline technologies, the abstraction is valid only when technical design is organized into

  19. Water-soluble luminescent quantum dots and biomolecular conjugates thereof and related compositions and method of use

    Science.gov (United States)

    Nie, Shuming; Chan, Warren C. W.; Emory, Steven R.

    2002-01-01

    The present invention provides a water-soluble luminescent quantum dot, a biomolecular conjugate thereof and a composition comprising such a quantum dot or conjugate. Additionally, the present invention provides a method of obtaining a luminescent quantum dot, a method of making a biomolecular conjugate thereof, and methods of using a biomolecular conjugate for ultrasensitive nonisotopic detection in vitro and in vivo.

  20. Water-soluble luminescent quantum dots and biomolecular conjugates thereof and related compositions and methods of use

    Science.gov (United States)

    Nie, Shuming; Chan, Warren C. W.; Emory, Stephen

    2007-03-20

    The present invention provides a water-soluble luminescent quantum dot, a biomolecular conjugate thereof and a composition comprising such a quantum dot or conjugate. Additionally, the present invention provides a method of obtaining a luminescent quantum dot, a method of making a biomolecular conjugate thereof, and methods of using a biomolecular conjugate for ultrasensitive nonisotopic detection in vitro and in vivo.

  1. MPBEC, a Matlab Program for Biomolecular Electrostatic Calculations

    Science.gov (United States)

    Vergara-Perez, Sandra; Marucho, Marcelo

    2016-01-01

    One of the most used and efficient approaches to compute electrostatic properties of biological systems is to numerically solve the Poisson-Boltzmann (PB) equation. There are several software packages available that solve the PB equation for molecules in aqueous electrolyte solutions. Most of these software packages are useful for scientists with specialized training and expertise in computational biophysics. However, the user is usually required to manually take several important choices, depending on the complexity of the biological system, to successfully obtain the numerical solution of the PB equation. This may become an obstacle for researchers, experimentalists, even students with no special training in computational methodologies. Aiming to overcome this limitation, in this article we present MPBEC, a free, cross-platform, open-source software that provides non-experts in the field an easy and efficient way to perform biomolecular electrostatic calculations on single processor computers. MPBEC is a Matlab script based on the Adaptative Poisson-Boltzmann Solver, one of the most popular approaches used to solve the PB equation. MPBEC does not require any user programming, text editing or extensive statistical skills, and comes with detailed user-guide documentation. As a unique feature, MPBEC includes a useful graphical user interface (GUI) application which helps and guides users to configure and setup the optimal parameters and approximations to successfully perform the required biomolecular electrostatic calculations. The GUI also incorporates visualization tools to facilitate users pre- and post-analysis of structural and electrical properties of biomolecules.

  2. MPBEC, a Matlab Program for Biomolecular Electrostatic Calculations.

    Science.gov (United States)

    Vergara-Perez, Sandra; Marucho, Marcelo

    2016-01-01

    One of the most used and efficient approaches to compute electrostatic properties of biological systems is to numerically solve the Poisson-Boltzmann (PB) equation. There are several software packages available that solve the PB equation for molecules in aqueous electrolyte solutions. Most of these software packages are useful for scientists with specialized training and expertise in computational biophysics. However, the user is usually required to manually take several important choices, depending on the complexity of the biological system, to successfully obtain the numerical solution of the PB equation. This may become an obstacle for researchers, experimentalists, even students with no special training in computational methodologies. Aiming to overcome this limitation, in this article we present MPBEC, a free, cross-platform, open-source software that provides non-experts in the field an easy and efficient way to perform biomolecular electrostatic calculations on single processor computers. MPBEC is a Matlab script based on the Adaptative Poisson Boltzmann Solver, one of the most popular approaches used to solve the PB equation. MPBEC does not require any user programming, text editing or extensive statistical skills, and comes with detailed user-guide documentation. As a unique feature, MPBEC includes a useful graphical user interface (GUI) application which helps and guides users to configure and setup the optimal parameters and approximations to successfully perform the required biomolecular electrostatic calculations. The GUI also incorporates visualization tools to facilitate users pre- and post- analysis of structural and electrical properties of biomolecules.

  3. Data-driven coarse graining of large biomolecular structures.

    Science.gov (United States)

    Chen, Yi-Ling; Habeck, Michael

    2017-01-01

    Advances in experimental and computational techniques allow us to study the structure and dynamics of large biomolecular assemblies at increasingly higher resolution. However, with increasing structural detail it can be challenging to unravel the mechanism underlying the function of molecular machines. One reason is that atomistic simulations become computationally prohibitive. Moreover it is difficult to rationalize the functional mechanism of systems composed of tens of thousands to millions of atoms by following each atom's movements. Coarse graining (CG) allows us to understand biological structures from a hierarchical perspective and to gradually zoom into the adequate level of structural detail. This article introduces a Bayesian approach for coarse graining biomolecular structures. We develop a probabilistic model that aims to represent the shape of an experimental structure as a cloud of bead particles. The particles interact via a pairwise potential whose parameters are estimated along with the bead positions and the CG mapping between atoms and beads. Our model can also be applied to density maps obtained by cryo-electron microscopy. We illustrate our approach on various test systems.

  4. Neural Mechanisms and Information Processing in Recognition Systems

    Directory of Open Access Journals (Sweden)

    Mamiko Ozaki

    2014-10-01

    Full Text Available Nestmate recognition is a hallmark of social insects. It is based on the match/mismatch of an identity signal carried by members of the society with that of the perceiving individual. While the behavioral response, amicable or aggressive, is very clear, the neural systems underlying recognition are not fully understood. Here we contrast two alternative hypotheses for the neural mechanisms that are responsible for the perception and information processing in recognition. We focus on recognition via chemical signals, as the common modality in social insects. The first, classical, hypothesis states that upon perception of recognition cues by the sensory system the information is passed as is to the antennal lobes and to higher brain centers where the information is deciphered and compared to a neural template. Match or mismatch information is then transferred to some behavior-generating centers where the appropriate response is elicited. An alternative hypothesis, that of “pre-filter mechanism”, posits that the decision as to whether to pass on the information to the central nervous system takes place in the peripheral sensory system. We suggest that, through sensory adaptation, only alien signals are passed on to the brain, specifically to an “aggressive-behavior-switching center”, where the response is generated if the signal is above a certain threshold.

  5. Informational and Causal Architecture of Discrete-Time Renewal Processes

    Directory of Open Access Journals (Sweden)

    Sarah E. Marzen

    2015-07-01

    Full Text Available Renewal processes are broadly used to model stochastic behavior consisting of isolated events separated by periods of quiescence, whose durations are specified by a given probability law. Here, we identify the minimal sufficient statistic for their prediction (the set of causal states, calculate the historical memory capacity required to store those states (statistical complexity, delineate what information is predictable (excess entropy, and decompose the entropy of a single measurement into that shared with the past, future, or both. The causal state equivalence relation defines a new subclass of renewal processes with a finite number of causal states despite having an unbounded interevent count distribution. We use the resulting formulae to analyze the output of the parametrized Simple Nonunifilar Source, generated by a simple two-state hidden Markov model, but with an infinite-state ϵ-machine presentation. All in all, the results lay the groundwork for analyzing more complex processes with infinite statistical complexity and infinite excess entropy.

  6. Metadata and their impact on processes in Building Information Modeling

    Directory of Open Access Journals (Sweden)

    Vladimir Nyvlt

    2014-04-01

    Full Text Available Building Information Modeling (BIM itself contains huge potential, how to increase effectiveness of every project in its all life cycle. It means from initial investment plan through project and building-up activities to long-term usage and property maintenance and finally demolition. Knowledge Management or better say Knowledge Sharing covers two sets of tools, managerial and technological. Manager`s needs are real expectations and desires of final users in terms of how could they benefit from managing long-term projects, covering whole life cycle in terms of sparing investment money and other resources. Technology employed can help BIM processes to support and deliver these benefits to users. How to use this technology for data and metadata collection, storage and sharing, which processes may these new technologies deploy. We will touch how to cover optimized processes proposal for better and smooth support of knowledge sharing within project time-scale, and covering all its life cycle.

  7. Bayesian inference for Markov jump processes with informative observations.

    Science.gov (United States)

    Golightly, Andrew; Wilkinson, Darren J

    2015-04-01

    In this paper we consider the problem of parameter inference for Markov jump process (MJP) representations of stochastic kinetic models. Since transition probabilities are intractable for most processes of interest yet forward simulation is straightforward, Bayesian inference typically proceeds through computationally intensive methods such as (particle) MCMC. Such methods ostensibly require the ability to simulate trajectories from the conditioned jump process. When observations are highly informative, use of the forward simulator is likely to be inefficient and may even preclude an exact (simulation based) analysis. We therefore propose three methods for improving the efficiency of simulating conditioned jump processes. A conditioned hazard is derived based on an approximation to the jump process, and used to generate end-point conditioned trajectories for use inside an importance sampling algorithm. We also adapt a recently proposed sequential Monte Carlo scheme to our problem. Essentially, trajectories are reweighted at a set of intermediate time points, with more weight assigned to trajectories that are consistent with the next observation. We consider two implementations of this approach, based on two continuous approximations of the MJP. We compare these constructs for a simple tractable jump process before using them to perform inference for a Lotka-Volterra system. The best performing construct is used to infer the parameters governing a simple model of motility regulation in Bacillus subtilis.

  8. A DDC Bibliography on Optical or Graphic Information Processing (Information Sciences Series). Volume I.

    Science.gov (United States)

    Defense Documentation Center, Alexandria, VA.

    This unclassified-unlimited bibliography contains 183 references, with abstracts, dealing specifically with optical or graphic information processing. Citations are grouped under three headings: display devices and theory, character recognition, and pattern recognition. Within each group, they are arranged in accession number (AD-number) sequence.…

  9. Effectiveness of Information Technology Infrastructure Library Process Implementations by Information Technology Departments within United States Organizations

    Science.gov (United States)

    Persinger, Jon F.

    2010-01-01

    This research study examined whether the overall effectiveness of the Information Technology Infrastructure Library (ITIL) could be predicted by measuring multiple independent variables. The primary variables studied included the number of ITIL process modules adopted and the overall ITIL "maturity level." An online survey was used to…

  10. Evolução biomolecular homoquiral: a origem e a amplificação da quiralidade nas moléculas da vida Homochiral biomolecular evolution: the origin and the amplification of chirality in life molecules

    Directory of Open Access Journals (Sweden)

    José Augusto R. Rodrigues

    2010-01-01

    Full Text Available The fact that biologically relevant molecules exist only as one of the two enantiomers is a fascinating example of complete symmetry breaking of chirality and has long intrigued our curiosity. The origin of this selective chirality has remained a fundamental enigma with regard to the origin of life since the time of Pasteur, 160 years ago. The symmetry breaking processes, which include autocatalytic crystallization, asymmetric autocatalysis, spontaneous crystallization, adsorption and polymerization of amino acids on mineral surfaces, provide new insights into the origin of biomolecular homochirality.

  11. Faces in context: modulation of expression processing by situational information.

    Science.gov (United States)

    Diéguez-Risco, Teresa; Aguado, Luis; Albert, Jacobo; Hinojosa, José Antonio

    2013-01-01

    Numerous studies using the event-related potential (ERP) technique have found that emotional expressions modulate ERP components appearing at different post-stimulus onset times and are indicative of different stages of face processing. With the aim of studying the time course of integration of context and facial expression information, we investigated whether these modulations are sensitive to the situational context in which emotional expressions are perceived. Participants were asked to identify the expression of target faces that were presented immediately after reading short sentences that described happy or anger-inducing situations. The main manipulation was the congruency between the emotional content of the sentences and the target expression. Context-independent amplitude modulation of the N170 and N400 components by emotional expression was observed. On the other hand, context effects appeared on a later component (late positive potential, or LPP), with enhanced amplitudes on incongruent trials. These results show that the early stages of face processing where emotional expressions are coded are not sensitive to verbal information about the situation in which they appear. The timing of context congruency effects suggests that integration of facial expression with situational information occurs at a later stage, probably related to the detection of affective congruency.

  12. Defense Waste Processing Facility staged operations: environmental information document

    International Nuclear Information System (INIS)

    1981-11-01

    Environmental information is presented relating to a staged version of the proposed Defense Waste Processing Facility (DWPF) at the Savannah River Plant. The information is intended to provide the basis for an Environmental Impact Statement. In either the integral or the staged design, the DWPF will convert the high-level waste currently stored in tanks into: a leach-resistant form containing about 99.9% of all the radioactivity, and a residual, slightly contaminated salt, which is disposed of as saltcrete. In the first stage of the staged version, the insoluble sludge portion of the waste and the long lived radionuclides contained therein will be vitrified. The waste glass will be sealed in canisters and stored onsite until shipped to a Federal repository. In the second stage, the supernate portion of the waste will be decontaminated by ion exchange. The recovered radionuclides will be transferred to the Stage 1 facility, and mixed with the sludge feed before vitrification. The residual, slightly contaminated salt solution will be mixed with Portland cement to form a concrete product (saltcrete) which will be buried onsite in an engineered landfill. This document describes the conceptual facilities and processes for producing glass waste and decontaminated salt. The environmental effects of facility construction, normal operations, and accidents are then presented. Descriptions of site and environs, alternative sites and waste disposal options, and environmental consultations and permits are given in the base Environmental Information Document

  13. Quantum information processing with electronic and nuclear spins in semiconductors

    Science.gov (United States)

    Klimov, Paul Victor

    Traditional electronic and communication devices operate by processing binary information encoded as bits. Such digital devices have led to the most advanced technologies that we encounter in our everyday lives and they influence virtually every aspect of our society. Nonetheless, there exists a much richer way to encode and process information. By encoding information in quantum mechanical states as qubits, phenomena such as coherence and entanglement can be harnessed to execute tasks that are intractable to digital devices. Under this paradigm, it should be possible to realize quantum computers, quantum communication networks and quantum sensors that outperform their classical counterparts. The electronic spin states of color-center defects in the semiconductor silicon carbide have recently emerged as promising qubit candidates. They have long-lived quantum coherence up to room temperature, they can be controlled with mature magnetic resonance techniques, and they have a built-in optical interface operating near the telecommunication bands. In this thesis I will present two of our contributions to this field. The first is the electric-field control of electron spin qubits. This development lays foundation for quantum electronics that operate via electrical gating, much like traditional electronics. The second is the universal control and entanglement of electron and nuclear spin qubits in an ensemble under ambient conditions. This development lays foundation for quantum devices that have a built-in redundancy and can operate in real-world conditions. Both developments represent important steps towards practical quantum devices in an electronic grade material.

  14. Visual information processing: the structure and creation of visual representations.

    Science.gov (United States)

    Marr, D

    1980-07-08

    For human vision to be explained by a computational theory, the first question is plain: What are the problems that the brain solves when we see? It is argued that vision is the construction of efficient symbolic descriptions from images of the world. An important aspect of vision is therefore the choice of representations for the different kinds of information in a visual scene. An overall framework is suggested for extracting shape information from images, in which the analysis proceeds through three representations: (1) the primal sketch, which makes explicit the intensity changes and local two-dimensional geometry of an image; (2) 2 1/2-D sketch, which is a viewer-centred representation of the deplth, orientation and discontinuities of the visible surfaces; and (3) the 3-D model representation, which allows an object-centred description of the three-dimensional structure and organization of a viewed shape. The critical act in formulating computational theories for process capable of constructing these representations is the discovery of valid constraints on the way the world behaves, that provide sufficient additional information to allow recovery of the desired characteristic. Finally, once a computational theory for a process has been formulated, algorithms for implementing it may be designed, and their performance compared with that of the human visual processor.

  15. 78 FR 64146 - 30-Day Notice of Proposed Information Collection: Technical Processing Requirements for...

    Science.gov (United States)

    2013-10-25

    ... Information Collection: Technical Processing Requirements for Multifamily Project Mortgage Insurance AGENCY: Office of the Chief Information Officer, HUD. ACTION: Notice. SUMMARY: HUD has submitted the proposed... Information Collection Title of Information Collection: Technical Processing Requirements for Multifamily...

  16. Effect of caffeine on information processing: evidence from stroop task.

    Science.gov (United States)

    Dixit, Abhinav; Goyal, Abhishek; Thawani, Rajat; Vaney, Neelam

    2012-07-01

    Caffeine is a pyschostimulant present in various beverages and known to alter alertness and performance by acting on the central nervous system. Its effects on central nervous system have been studied using EEG, evoked potentials, fMRI, and neuropsychological tests. The Stroop task is a widely used tool in psychophysiology to understand the attention processes and is based on the principle that processing of two different kinds of information (like the word or colour) is parallel and at different speeds with a common response channel. To study the effect of caffeine on classical color word Stroop task. This study was conducted on 30 male undergraduate students by performing a test before and 40 minutes after consuming 3 mg/Kg caffeine and evaluating the effect of caffeine on Stroop interference and facilitation. The results revealed that practice has no effect on the performance in a Stroop task. However, there was reduction in Stroop interference and increase in facilitation after consumption of caffeine as was evident by changes in the reaction times in response to neutral, incongruent, and congruent stimuli. We hypothesize that caffeine led to faster processing of relevant information.

  17. Can Intrinsic Fluctuations Increase Efficiency in Neural Information Processing?

    Science.gov (United States)

    Liljenström, Hans

    2003-05-01

    All natural processes are accompanied by fluctuations, characterized as noise or chaos. Biological systems, which have evolved during billions of years, are likely to have adapted, not only to cope with such fluctuations, but also to make use of them. We investigate how the complex dynamics of the brain, including oscillations, chaos and noise, can affect the efficiency of neural information processing. In particular, we consider the amplification and functional role of internal fluctuations. Using computer simulations of a neural network model of the olfactory cortex and hippocampus, we demonstrate how microscopic fluctuations can result in global effects at the network level. We show that the rate of information processing in associative memory tasks can be maximized for optimal noise levels, analogous to stochastic resonance phenomena. Noise can also induce transitions between different dynamical states, which could be of significance for learning and memory. A chaotic-like behavior, induced by noise or by an increase in neuronal excitability, can enhance system performance if it is transient and converges to a limit cycle memory state. We speculate whether this dynamical behavior perhaps could be related to (creative) thinking.

  18. Impact of informal institutions on the development integration processes

    Directory of Open Access Journals (Sweden)

    Sidorova Alexandra, M.

    2015-06-01

    Full Text Available The paper deals with the impact of informal institutions on the definition of the vector integration processes and the development of integration processes in the countries of the Customs Union and Ukraine. The degree of scientific development of the phenomenon in different economic schools is determined in this article. Economic mentality is a basic informal institutions, which determines the degree of effectiveness of the integration processes. This paper examines the nature, characteristics and effects of economic mentality on the economic activities of people. Ethnometrichal method allows to quantify the economic mentality that enables deeper understanding and analysis of the formation and functioning of political and economic system, especially business and management, establishing contacts with other cultures. It was measured modern Belarusian economic mentality based on international methodology Hofstede and compared with the economic mentality of Russia, Ukraine and Kazakhstan. With the help of cluster analysis congruence economic mentality of the Customs Union and Ukraine was determined. Economic mentality of these countries was also compared with the economic mentality of other countries in order to identify the main types of economic culture.

  19. A New Technique For Information Processing of CLIC Technical Documentation

    CERN Document Server

    Tzermpinos, Konstantinos

    2013-01-01

    The scientific work presented in this paper could be described as a novel, systemic approach to the process of organization of CLIC documentation. The latter refers to the processing of various sets of archived data found on various CERN archiving services in a more friendly and organized way. From physics aspect, this is equal to having an initial system characterized by high entropy, which after some transformation of energy and matter will produce a final system of reduced entropy. However, this reduction in entropy can be considered valid for open systems only, which are sub-systems of grander isolated systems, to which the total entropy will always increase. Thus, using as basis elements from information theory, systems theory and thermodynamics, the unorganized form of data pending to be organized to a higher form, is modeled as an initial open sub-system with increased entropy, which, after the processing of information, will produce a final system with decreased entropy. This systemic approach to the ...

  20. Biased information processing in the escalation paradigm: information search and information evaluation as potential mediators of escalating commitment.

    Science.gov (United States)

    Schultze, Thomas; Pfeiffer, Felix; Schulz-Hardt, Stefan

    2012-01-01

    Escalation of commitment denotes decision makers' increased reinvestment of resources in a losing course of action. Despite the relevance of this topic, little is known about how information is processed in escalation situations, that is, whether decision makers who receive negative outcome feedback on their initial decision search for and/or process information biasedly and whether these biases contribute to escalating commitment. Contrary to a widely cited study by E. J. Conlon and J. M. Parks (1987), in 3 experiments, the authors found that biases do not occur on the level of information search. Neither in a direct replication and extension of the original study with largely increased test power (Experiment 1) nor under methodologically improved conditions (Experiments 2 and 3) did decision makers responsible for failure differ from nonresponsible decision makers with regards to information search, and no selective search for information supporting the initial decision or voting for further reinvestment was observed. However, Experiments 3 and 4 show that the evaluation of the previously sought information is biased among participants who were responsible for initiating the course of action. Mediation analyses show that this evaluation bias in favor of reinvestment partially mediated the responsibility effect on escalation of commitment.

  1. MISSE in the Materials and Processes Technical Information System (MAPTIS )

    Science.gov (United States)

    Burns, DeWitt; Finckenor, Miria; Henrie, Ben

    2013-01-01

    Materials International Space Station Experiment (MISSE) data is now being collected and distributed through the Materials and Processes Technical Information System (MAPTIS) at Marshall Space Flight Center in Huntsville, Alabama. MISSE data has been instrumental in many programs and continues to be an important source of data for the space community. To facilitate great access to the MISSE data the International Space Station (ISS) program office and MAPTIS are working to gather this data into a central location. The MISSE database contains information about materials, samples, and flights along with pictures, pdfs, excel files, word documents, and other files types. Major capabilities of the system are: access control, browsing, searching, reports, and record comparison. The search capabilities will search within any searchable files so even if the desired meta-data has not been associated data can still be retrieved. Other functionality will continue to be added to the MISSE database as the Athena Platform is expanded

  2. Reference Information Extraction and Processing Using Random Conditional Fields

    Directory of Open Access Journals (Sweden)

    Tudor Groza

    2012-06-01

    Full Text Available Fostering both the creation and the linking of data with the scope of supporting the growth of the Linked Data Web requires us to improve the acquisition and extraction mechanisms of the underlying semantic metadata. This is particularly important for the scientific publishing domain, where currently most of the datasets are being created in an author-driven, manual manner. In addition, such datasets capture only fragments of the complete metadata, omitting usually, important elements such as the references, although they represent valuable information. In this paper we present an approach that aims at dealing with this aspect of extraction and processing of reference information. The experimental evaluation shows that, currently, our solution handles very well diverse types of reference format, thus making it usable for, or adaptable to, any area of scientific publishing.

  3. Research on information security system of waste terminal disposal process

    Science.gov (United States)

    Zhou, Chao; Wang, Ziying; Guo, Jing; Guo, Yajuan; Huang, Wei

    2017-05-01

    Informatization has penetrated the whole process of production and operation of electric power enterprises. It not only improves the level of lean management and quality service, but also faces severe security risks. The internal network terminal is the outermost layer and the most vulnerable node of the inner network boundary. It has the characteristics of wide distribution, long depth and large quantity. The user and operation and maintenance personnel technical level and security awareness is uneven, which led to the internal network terminal is the weakest link in information security. Through the implementation of security of management, technology and physics, we should establish an internal network terminal security protection system, so as to fully protect the internal network terminal information security.

  4. The process of urban regeneration in context of information society

    Directory of Open Access Journals (Sweden)

    Bazik Dragana

    2006-01-01

    Full Text Available This paper deals with the concept of innovation of the urban regeneration process in context of transformations which are generated by information-communication technologies. From one aspect, Serbia has an exceptional human potential presented in number of 13,000 graduates each year, or in share of 42% of population who speaks English, which is the largest among all Eastern and Central European countries. This forms a basis for formulation of strategies of information society development in Serbia as well as for economic adjustments based upon knowledge, and for tracing the way to future knowledge society, i.e. eEurope 2020. On the other hand, we are witnessing an intensive development of huge complexes of mega and hypermarkets as a present dominant way for our city spaces' regeneration. At the same time, experiences from some other locations point to the deterioration of cities' urban identity as a consequence of the global capital infiltration and of development within an urban tissue of a huge complex of multi-national companies. Aiming to overcome the mistakes portrayed by international experience, as well as potential oversights that may occur because of routine and mismatch between certain phases of the sustainable development process, this paper makes an emphasis on the importance of an integral evaluation of the information society development trends and the spatial aspects of urban regeneration. It is essential to adjust devastated urban spaces as artifacts of one technological era to the actual information era with indication of future digital knowledge era, i.e. to plan, design and develop *according to new technological requirements and possibilities for new working places and new quality of living.

  5. Small-scale quantum information processing with linear optics

    International Nuclear Information System (INIS)

    Bergou, J.A.; Steinberg, A.M.; Mohseni, M.

    2005-01-01

    Full text: Photons are the ideal systems for carrying quantum information. Although performing large-scale quantum computation on optical systems is extremely demanding, non scalable linear-optics quantum information processing may prove essential as part of quantum communication networks. In addition efficient (scalable) linear-optical quantum computation proposal relies on the same optical elements. Here, by constructing multirail optical networks, we experimentally study two central problems in quantum information science, namely optimal discrimination between nonorthogonal quantum states, and controlling decoherence in quantum systems. Quantum mechanics forbids deterministic discrimination between nonorthogonal states. This is one of the central features of quantum cryptography, which leads to secure communications. Quantum state discrimination is an important primitive in quantum information processing, since it determines the limitations of a potential eavesdropper, and it has applications in quantum cloning and entanglement concentration. In this work, we experimentally implement generalized measurements in an optical system and demonstrate the first optimal unambiguous discrimination between three non-orthogonal states with a success rate of 55 %, to be compared with the 25 % maximum achievable using projective measurements. Furthermore, we present the first realization of unambiguous discrimination between a pure state and a nonorthogonal mixed state. In a separate experiment, we demonstrate how decoherence-free subspaces (DFSs) may be incorporated into a prototype optical quantum algorithm. Specifically, we present an optical realization of two-qubit Deutsch-Jozsa algorithm in presence of random noise. By introduction of localized turbulent airflow we produce a collective optical dephasing, leading to large error rates and demonstrate that using DFS encoding, the error rate in the presence of decoherence can be reduced from 35 % to essentially its pre

  6. MarsSI: Martian surface data processing information system

    Science.gov (United States)

    Quantin-Nataf, C.; Lozac'h, L.; Thollot, P.; Loizeau, D.; Bultel, B.; Fernando, J.; Allemand, P.; Dubuffet, F.; Poulet, F.; Ody, A.; Clenet, H.; Leyrat, C.; Harrisson, S.

    2018-01-01

    MarsSI (Acronym for Mars System of Information, https://emars.univ-lyon1.fr/MarsSI/, is a web Geographic Information System application which helps managing and processing martian orbital data. The MarsSI facility is part of the web portal called PSUP (Planetary SUrface Portal) developed by the Observatories of Paris Sud (OSUPS) and Lyon (OSUL) to provide users with efficient and easy access to data products dedicated to the martian surface. The portal proposes 1) the management and processing of data thanks to MarsSI and 2) the visualization and merging of high level (imagery, spectral, and topographic) products and catalogs via a web-based user interface (MarsVisu). The portal PSUP as well as the facility MarsVisu is detailed in a companion paper (Poulet et al., 2018). The purpose of this paper is to describe the facility MarsSI. From this application, users are able to easily and rapidly select observations, process raw data via automatic pipelines, and get back final products which can be visualized under Geographic Information Systems. Moreover, MarsSI also contains an automatic stereo-restitution pipeline in order to produce Digital Terrain Models (DTM) on demand from HiRISE (High Resolution Imaging Science Experiment) or CTX (Context Camera) pair-images. This application is funded by the European Union's Seventh Framework Programme (FP7/2007-2013) (ERC project eMars, No. 280168) and has been developed in the scope of Mars, but the design is applicable to any other planetary body of the solar system.

  7. Towards Device-Independent Information Processing on General Quantum Networks

    Science.gov (United States)

    Lee, Ciarán M.; Hoban, Matty J.

    2018-01-01

    The violation of certain Bell inequalities allows for device-independent information processing secure against nonsignaling eavesdroppers. However, this only holds for the Bell network, in which two or more agents perform local measurements on a single shared source of entanglement. To overcome the practical constraints that entangled systems can only be transmitted over relatively short distances, large-scale multisource networks have been employed. Do there exist analogs of Bell inequalities for such networks, whose violation is a resource for device independence? In this Letter, the violation of recently derived polynomial Bell inequalities will be shown to allow for device independence on multisource networks, secure against nonsignaling eavesdroppers.

  8. Intelligent query processing for semantic mediation of information systems

    Directory of Open Access Journals (Sweden)

    Saber Benharzallah

    2011-11-01

    Full Text Available We propose an intelligent and an efficient query processing approach for semantic mediation of information systems. We propose also a generic multi agent architecture that supports our approach. Our approach focuses on the exploitation of intelligent agents for query reformulation and the use of a new technology for the semantic representation. The algorithm is self-adapted to the changes of the environment, offers a wide aptitude and solves the various data conflicts in a dynamic way; it also reformulates the query using the schema mediation method for the discovered systems and the context mediation for the other systems.

  9. Information management data base for fusion target fabrication processes

    International Nuclear Information System (INIS)

    Reynolds, J.

    1983-01-01

    A computer-based data management system has been developed to handle data associated with target fabrication processes including glass microballoon characterization, gas filling, materials coating, and storage locations. The system provides automatic data storage and computation, flexible data entry procedures, fast access, automated report generation, and secure data transfer. It resides on a CDC CYBER 175 computer and is compatible with the CDC data base language Query Update, but is based on custom fortran software interacting directly with the CYBER's file management system. The described data base maintains detailed, accurate, and readily available records of fusion targets information

  10. Towards process-informed bias correction of climate change simulations

    Science.gov (United States)

    Maraun, Douglas; Shepherd, Theodore G.; Widmann, Martin; Zappa, Giuseppe; Walton, Daniel; Gutiérrez, José M.; Hagemann, Stefan; Richter, Ingo; Soares, Pedro M. M.; Hall, Alex; Mearns, Linda O.

    2017-11-01

    Biases in climate model simulations introduce biases in subsequent impact simulations. Therefore, bias correction methods are operationally used to post-process regional climate projections. However, many problems have been identified, and some researchers question the very basis of the approach. Here we demonstrate that a typical cross-validation is unable to identify improper use of bias correction. Several examples show the limited ability of bias correction to correct and to downscale variability, and demonstrate that bias correction can cause implausible climate change signals. Bias correction cannot overcome major model errors, and naive application might result in ill-informed adaptation decisions. We conclude with a list of recommendations and suggestions for future research to reduce, post-process, and cope with climate model biases.

  11. A conceptual framework for intelligent real-time information processing

    Science.gov (United States)

    Schudy, Robert

    1987-01-01

    By combining artificial intelligence concepts with the human information processing model of Rasmussen, a conceptual framework was developed for real time artificial intelligence systems which provides a foundation for system organization, control and validation. The approach is based on the description of system processing terms of an abstraction hierarchy of states of knowledge. The states of knowledge are organized along one dimension which corresponds to the extent to which the concepts are expressed in terms of the system inouts or in terms of the system response. Thus organized, the useful states form a generally triangular shape with the sensors and effectors forming the lower two vertices and the full evaluated set of courses of action the apex. Within the triangle boundaries are numerous processing paths which shortcut the detailed processing, by connecting incomplete levels of analysis to partially defined responses. Shortcuts at different levels of abstraction include reflexes, sensory motor control, rule based behavior, and satisficing. This approach was used in the design of a real time tactical decision aiding system, and in defining an intelligent aiding system for transport pilots.

  12. Information processing style used by Compulsory Secondary Education students

    Directory of Open Access Journals (Sweden)

    Alfredo Campos

    2016-10-01

    Full Text Available Mental images are mental representations of people, objects and situations that are not present and are formed by using the imagination. Many studies have addressed this psychological ability, its typology and its involvement in the academic environment. Along these lines, the aim of our study was to assess the information processing style (verbal, object, spatial scales, and mental rotation that is commonly used by students from different specialties of Compulsory Secondary Education. To that end, two tests: The Mental Rotation Test (MRT and the Object-Spatial Imagery and Verbal Questionnaire (OSIVQ were administered to a sample of 126 Compulsory Secondary Education students. MRT assessed any significant difference in the ability to mentally rotate images depending on gender and specialty. Significant differences were found by specialty, showing that science students had better ability to mentally rotate images than humanities ones. Significant differences were found by gender and specialty in the OSIVQ. Men showed better spatial and verbal processing style than women, and humanities students excelled in object processing (in comparison to science students and in verbal processing (in comparison to science and art students.

  13. Social Information Processing Mechanisms and Victimization: A Literature Review.

    Science.gov (United States)

    van Reemst, Lisa; Fischer, Tamar F C; Zwirs, Barbara W C

    2016-01-01

    The aim of the current literature review, which is based on 64 empirical studies, was to assess to what extent mechanisms of the Social Information Processing (SIP) model of Crick and Dodge (1994) are related to victimization. The reviewed studies have provided support for the relation between victimization and several social information processing mechanisms, especially the interpretation of cues and self-efficacy (as part of the response decision). The relationship between victimization and other mechanisms, such as the response generation, was only studied in a few articles. Until now research has often focused on just one step of the model, instead of attempting to measure the associations between multiple mechanisms and victimization in multivariate analyses. Such analyses would be interesting to gain more insight into the SIP model and its relationship with victimization. The few available longitudinal studies show that mechanisms both predict victimization (internal locus of control, negative self-evaluations and less assertive response selection) and are predicted by victimization (hostile attribution of intent and negative evaluations of others). Associations between victimization and SIP mechanisms vary across different types and severity of victimization (stronger in personal and severe victimization), and different populations (stronger among young victims). Practice could focus on these stronger associations and the interpretation of cues. More research is needed however, to investigate whether intervention programs that address SIP mechanisms are suitable for victimization and all relevant populations. © The Author(s) 2014.

  14. Risk-maps informing land-use planning processes

    Energy Technology Data Exchange (ETDEWEB)

    Basta, Claudia [DIRC Sustainable Urban Areas, Section of Material Science and Sustainable Construction, Delft University of Technology, Stevinweg 1, 2600 GA, Delft (Netherlands)]. E-mail: c.basta@citg.tudelft.nl; Neuvel, Jeroen M.M. [Land Use Planning, Wageningen University, Droevendaalsesteeg 3, Postbus 47, 6700 AA Wageningen (Netherlands)]. E-mail: jeroen.neuvel@wur.nl; Zlatanova, Sisi [Section GISt, OTB Research Institute for Housing, Urban and Mobility Studies, Delft University of Technology, Jaffalaan 9, P.O. Box 5030, 2600 GA, Delft (Netherlands)]. E-mail: s.zlatanova@otb.tudelft.nl; Ale, Ben [Safety Science Group, TBM Faculty, Delft University of Technology, Jaffalaan 5, 2600 GA, Delft (Netherlands)

    2007-06-25

    The definition of safety distances as required by Art 12 of the Seveso II Directive on dangerous substances (96/82/EC) is necessary to minimize the consequences of potential major accidents. As they affect the land-use destinations of involved areas, safety distances can be considered as risk tolerability criteria with a territorial reflection. Recent studies explored the suitability of using Geographical Information System technologies to support their elaboration and visual rendering. In particular, the elaboration of GIS 'risk-maps' has been recognized as functional to two objectives: connecting spatial planners and safety experts during decision making processes and communicating risk to non-experts audiences. In order to elaborate on these findings and to verify their reflection on European practices, the article presents the result of a comparative study between the United Kingdom and the Netherlands recent developments. Their land-use planning practices for areas falling under Seveso II requirements are explored. The role of GIS risk-maps within decisional processes is analyzed and the reflection on the transparency and accessibility of risk-information is commented. Recommendations for further developments are given.

  15. Information theoretic methods for image processing algorithm optimization

    Science.gov (United States)

    Prokushkin, Sergey F.; Galil, Erez

    2015-01-01

    Modern image processing pipelines (e.g., those used in digital cameras) are full of advanced, highly adaptive filters that often have a large number of tunable parameters (sometimes > 100). This makes the calibration procedure for these filters very complex, and the optimal results barely achievable in the manual calibration; thus an automated approach is a must. We will discuss an information theory based metric for evaluation of algorithm adaptive characteristics ("adaptivity criterion") using noise reduction algorithms as an example. The method allows finding an "orthogonal decomposition" of the filter parameter space into the "filter adaptivity" and "filter strength" directions. This metric can be used as a cost function in automatic filter optimization. Since it is a measure of a physical "information restoration" rather than perceived image quality, it helps to reduce the set of the filter parameters to a smaller subset that is easier for a human operator to tune and achieve a better subjective image quality. With appropriate adjustments, the criterion can be used for assessment of the whole imaging system (sensor plus post-processing).

  16. Advanced modeling of management processes in information technology

    CERN Document Server

    Kowalczuk, Zdzislaw

    2014-01-01

    This book deals with the issues of modelling management processes of information technology and IT projects while its core is the model of information technology management and its component models (contextual, local) describing initial processing and the maturity capsule as well as a decision-making system represented by a multi-level sequential model of IT technology selection, which acquires a fuzzy rule-based implementation in this work. In terms of applicability, this work may also be useful for diagnosing applicability of IT standards in evaluation of IT organizations. The results of this diagnosis might prove valid for those preparing new standards so that – apart from their own visions – they could, to an even greater extent, take into account the capabilities and needs of the leaders of project and manufacturing teams. The book is intended for IT professionals using the ITIL, COBIT and TOGAF standards in their work. Students of computer science and management who are interested in the issue of IT...

  17. A Reaction Database for Small Molecule Pharmaceutical Processes Integrated with Process Information

    Directory of Open Access Journals (Sweden)

    Emmanouil Papadakis

    2017-10-01

    Full Text Available This article describes the development of a reaction database with the objective to collect data for multiphase reactions involved in small molecule pharmaceutical processes with a search engine to retrieve necessary data in investigations of reaction-separation schemes, such as the role of organic solvents in reaction performance improvement. The focus of this reaction database is to provide a data rich environment with process information available to assist during the early stage synthesis of pharmaceutical products. The database is structured in terms of reaction classification of reaction types; compounds participating in the reaction; use of organic solvents and their function; information for single step and multistep reactions; target products; reaction conditions and reaction data. Information for reactor scale-up together with information for the separation and other relevant information for each reaction and reference are also available in the database. Additionally, the retrieved information obtained from the database can be evaluated in terms of sustainability using well-known “green” metrics published in the scientific literature. The application of the database is illustrated through the synthesis of ibuprofen, for which data on different reaction pathways have been retrieved from the database and compared using “green” chemistry metrics.

  18. Stochastic Simulation of Biomolecular Reaction Networks Using the Biomolecular Network Simulator Software

    Science.gov (United States)

    2008-02-01

    Biotechnology HPC Sofware Applications Institute US Army Medical Research and Materiel Command...estimate or any other aspect of this collection of information, including suggestions for reducing this burden to Washington Headquarters Service

  19. Strategic Information Processing from Behavioural Data in Iterated Games

    Directory of Open Access Journals (Sweden)

    Michael S. Harré

    2018-01-01

    Full Text Available Iterated games are an important framework of economic theory and application, at least since the original work of Axelrod’s computational tournaments of the early 80’s. Recent theoretical results have shown that games (the economic context and game theory (the decision-making process are both formally equivalent to computational logic gates. Here these results are extended to behavioural data obtained from an experiment in which rhesus monkeys sequentially played thousands of the “matching pennies” game, an empirical example similar to Axelrod’s tournaments in which algorithms played against one another. The results show that the monkeys exhibit a rich variety of behaviours, both between and within subjects when playing opponents of varying complexity. Despite earlier suggestions, there is no clear evidence that the win-stay, lose-switch strategy is used, however there is evidence of non-linear strategy-based interactions between the predictors of future choices. It is also shown that there is consistent evidence across protocols and across individuals that the monkeys extract non-markovian information, i.e., information from more than just the most recent state of the game. This work shows that the use of information theory in game theory can test important hypotheses that would otherwise be more difficult to extract using traditional statistical methods.

  20. Biomolecular Simulation of Base Excision Repair and Protein Signaling

    Energy Technology Data Exchange (ETDEWEB)

    Straatsma, TP; McCammon, J A; Miller, John H; Smith, Paul E; Vorpagel, Erich R; Wong, Chung F; Zacharias, Martin W

    2006-03-03

    The goal of the Biomolecular Simulation of Base Excision Repair and Protein Signaling project is to enhance our understanding of the mechanism of human polymerase-β, one of the key enzymes in base excision repair (BER) and the cell-signaling enzymes cyclic-AMP-dependent protein kinase. This work used molecular modeling and simulation studies to specifically focus on the • dynamics of DNA and damaged DNA • dynamics and energetics of base flipping in DNA • mechanism and fidelity of nucleotide insertion by BER enzyme human polymerase-β • mechanism and inhibitor design for cyclic-AMP-dependent protein kinase. Molecular dynamics simulations and electronic structure calculations have been performed using the computer resources at the Molecular Science Computing Facility at the Environmental Molecular Sciences Laboratory.

  1. Biomolecular Network-Based Synergistic Drug Combination Discovery

    Directory of Open Access Journals (Sweden)

    Xiangyi Li

    2016-01-01

    Full Text Available Drug combination is a powerful and promising approach for complex disease therapy such as cancer and cardiovascular disease. However, the number of synergistic drug combinations approved by the Food and Drug Administration is very small. To bridge the gap between urgent need and low yield, researchers have constructed various models to identify synergistic drug combinations. Among these models, biomolecular network-based model is outstanding because of its ability to reflect and illustrate the relationships among drugs, disease-related genes, therapeutic targets, and disease-specific signaling pathways as a system. In this review, we analyzed and classified models for synergistic drug combination prediction in recent decade according to their respective algorithms. Besides, we collected useful resources including databases and analysis tools for synergistic drug combination prediction. It should provide a quick resource for computational biologists who work with network medicine or synergistic drug combination designing.

  2. Techniques of biomolecular quantification through AMS detection of radiocarbon

    International Nuclear Information System (INIS)

    Vogel, S.J.; Turteltaub, K.W.; Frantz, C.; Felton, J.S.; Gledhill, B.L.

    1992-01-01

    Accelerator mass spectrometry offers a large gain over scintillation counting in sensitivity for detecting radiocarbon in biomolecular tracing. Application of this sensitivity requires new considerations of procedures to extract or isolate the carbon fraction to be quantified, to inventory all carbon in the sample, to prepare graphite from the sample for use in the spectrometer, and to derive a meaningful quantification from the measured isotope ratio. These procedures need to be accomplished without contaminating the sample with radiocarbon, which may be ubiquitous in laboratories and on equipment previously used for higher dose, scintillation experiments. Disposable equipment, materials and surfaces are used to control these contaminations. Quantification of attomole amounts of labeled substances are possible through these techniques

  3. Perspective: Markov models for long-timescale biomolecular dynamics

    International Nuclear Information System (INIS)

    Schwantes, C. R.; McGibbon, R. T.; Pande, V. S.

    2014-01-01

    Molecular dynamics simulations have the potential to provide atomic-level detail and insight to important questions in chemical physics that cannot be observed in typical experiments. However, simply generating a long trajectory is insufficient, as researchers must be able to transform the data in a simulation trajectory into specific scientific insights. Although this analysis step has often been taken for granted, it deserves further attention as large-scale simulations become increasingly routine. In this perspective, we discuss the application of Markov models to the analysis of large-scale biomolecular simulations. We draw attention to recent improvements in the construction of these models as well as several important open issues. In addition, we highlight recent theoretical advances that pave the way for a new generation of models of molecular kinetics

  4. Role of Age, Gender and Education in Information Processing Speed

    Directory of Open Access Journals (Sweden)

    Martina Knežević

    2015-07-01

    Full Text Available Letter Digit Substitution Test (LDST is based on earlier developed substitution tests – the Wechsler's Digit Symbol Substitution Test (DSST and the Symbol Digit Modalities Test (SDMT. The performance on these tests depends on many different cognitive processes, including visual scanning, mental flexibility, sustained attention, psychomotor speed, and the speed of information processing. The LDST consists of "over-learned" signs – letters and digits – and participants only have to learn the letter-digit association, which makes performance relatively less dependent on memory and complex visual processes than it is in the DSST or SDMT. The aim of this study was to investigate to what extent age, sex, level of education of the participants and level of education of their parents influence LDST performance. A total of 334 participants (191 females aged 18-25 years were included in the study. Females and higher-level educated participants outperformed males and lower-level educated participants. Parents educational level only indirectly influenced the performance on the LDST, possibly through the participants level of education. Additionally, we derived normative data for the LDST for the ages between 18 and 25 years. Normative data in percentiles and z-values for the ages 18 to 25 years are presented, according to sex and level of education, which is compatible with and supplements the previously reported norms in other studies.

  5. Information-educational environment with adaptive control of learning process

    Science.gov (United States)

    Modjaev, A. D.; Leonova, N. M.

    2017-01-01

    Recent years, a new scientific branch connected with the activities in social sphere management developing intensively and it is called "Social Cybernetics". In the framework of this scientific branch, theory and methods of management of social sphere are formed. Considerable attention is paid to the management, directly in real time. However, the decision of such management tasks is largely constrained by the lack of or insufficiently deep study of the relevant sections of the theory and methods of management. The article discusses the use of cybernetic principles in solving problems of control in social systems. Applying to educational activities a model of composite interrelated objects representing the behaviour of students at various stages of educational process is introduced. Statistical processing of experimental data obtained during the actual learning process is being done. If you increase the number of features used, additionally taking into account the degree and nature of variability of levels of current progress of students during various types of studies, new properties of students' grouping are discovered. L-clusters were identified, reflecting the behaviour of learners with similar characteristics during lectures. It was established that the characteristics of the clusters contain information about the dynamics of learners' behaviour, allowing them to be used in additional lessons. The ways of solving the problem of adaptive control based on the identified dynamic characteristics of the learners are planned.

  6. Information theory and signal transduction systems: from molecular information processing to network inference.

    Science.gov (United States)

    Mc Mahon, Siobhan S; Sim, Aaron; Filippi, Sarah; Johnson, Robert; Liepe, Juliane; Smith, Dominic; Stumpf, Michael P H

    2014-11-01

    Sensing and responding to the environment are two essential functions that all biological organisms need to master for survival and successful reproduction. Developmental processes are marshalled by a diverse set of signalling and control systems, ranging from systems with simple chemical inputs and outputs to complex molecular and cellular networks with non-linear dynamics. Information theory provides a powerful and convenient framework in which such systems can be studied; but it also provides the means to reconstruct the structure and dynamics of molecular interaction networks underlying physiological and developmental processes. Here we supply a brief description of its basic concepts and introduce some useful tools for systems and developmental biologists. Along with a brief but thorough theoretical primer, we demonstrate the wide applicability and biological application-specific nuances by way of different illustrative vignettes. In particular, we focus on the characterisation of biological information processing efficiency, examining cell-fate decision making processes, gene regulatory network reconstruction, and efficient signal transduction experimental design. Copyright © 2014 Elsevier Ltd. All rights reserved.

  7. High-Dimensional Quantum Information Processing with Linear Optics

    Science.gov (United States)

    Fitzpatrick, Casey A.

    Quantum information processing (QIP) is an interdisciplinary field concerned with the development of computers and information processing systems that utilize quantum mechanical properties of nature to carry out their function. QIP systems have become vastly more practical since the turn of the century. Today, QIP applications span imaging, cryptographic security, computation, and simulation (quantum systems that mimic other quantum systems). Many important strategies improve quantum versions of classical information system hardware, such as single photon detectors and quantum repeaters. Another more abstract strategy engineers high-dimensional quantum state spaces, so that each successful event carries more information than traditional two-level systems allow. Photonic states in particular bring the added advantages of weak environmental coupling and data transmission near the speed of light, allowing for simpler control and lower system design complexity. In this dissertation, numerous novel, scalable designs for practical high-dimensional linear-optical QIP systems are presented. First, a correlated photon imaging scheme using orbital angular momentum (OAM) states to detect rotational symmetries in objects using measurements, as well as building images out of those interactions is reported. Then, a statistical detection method using chains of OAM superpositions distributed according to the Fibonacci sequence is established and expanded upon. It is shown that the approach gives rise to schemes for sorting, detecting, and generating the recursively defined high-dimensional states on which some quantum cryptographic protocols depend. Finally, an ongoing study based on a generalization of the standard optical multiport for applications in quantum computation and simulation is reported upon. The architecture allows photons to reverse momentum inside the device. This in turn enables realistic implementation of controllable linear-optical scattering vertices for

  8. Proceedings of the international advisory committee on 'biomolecular dynamics instrument DNA' and the workshop on 'biomolecular dynamics backscattering spectrometers'

    International Nuclear Information System (INIS)

    Arai, Masatoshi; Aizawa, Kazuya; Nakajima, Kenji; Shibata, Kaoru; Takahashi, Nobuaki

    2008-08-01

    A workshop entitled 'Biomolecular Dynamics Backscattering Spectrometers' was held on February 27th - 29th, 2008 at J-PARC Center, Japan Atomic Energy Agency. This workshop was planned to be held for aiming to realize an innovative neutron backscattering instrument, namely DNA, in the MLF and thus four leading scientists in the field of neutron backscattering instruments were invited as the International Advisory Committee (IAC member: Dr. Dan Neumann (Chair); Prof. Ferenc Mezei; Dr. Hannu Mutka; Dr. Philip Tregenna-Piggott) for DNA from institutes in the United States, France and Switzerland, where backscattering instruments are in-service. It was therefore held in the form of lecture anterior and then in the form of the committee posterior. This report includes the executive summary of the IAC and materials of the presentations in the IAC and the workshop. (author)

  9. BOOK REVIEW: Theory of Neural Information Processing Systems

    Science.gov (United States)

    Galla, Tobias

    2006-04-01

    It is difficult not to be amazed by the ability of the human brain to process, to structure and to memorize information. Even by the toughest standards the behaviour of this network of about 1011 neurons qualifies as complex, and both the scientific community and the public take great interest in the growing field of neuroscience. The scientific endeavour to learn more about the function of the brain as an information processing system is here a truly interdisciplinary one, with important contributions from biology, computer science, physics, engineering and mathematics as the authors quite rightly point out in the introduction of their book. The role of the theoretical disciplines here is to provide mathematical models of information processing systems and the tools to study them. These models and tools are at the centre of the material covered in the book by Coolen, Kühn and Sollich. The book is divided into five parts, providing basic introductory material on neural network models as well as the details of advanced techniques to study them. A mathematical appendix complements the main text. The range of topics is extremely broad, still the presentation is concise and the book well arranged. To stress the breadth of the book let me just mention a few keywords here: the material ranges from the basics of perceptrons and recurrent network architectures to more advanced aspects such as Bayesian learning and support vector machines; Shannon's theory of information and the definition of entropy are discussed, and a chapter on Amari's information geometry is not missing either. Finally the statistical mechanics chapters cover Gardner theory and the replica analysis of the Hopfield model, not without being preceded by a brief introduction of the basic concepts of equilibrium statistical physics. The book also contains a part on effective theories of the macroscopic dynamics of neural networks. Many dynamical aspects of neural networks are usually hard to find in the

  10. Using Geographic Information Systems in Knowledge Management Processes

    Directory of Open Access Journals (Sweden)

    Dr. Filiz Gürder

    2013-07-01

    Full Text Available Nowadays, organizations are required to develop quick and accurate responses to internal and external changes that gain momentum. In this context, knowledge management activities become more important to all organizations. On the other hand, Geographic Information Systems (GIS become common more and more. GIS which address a broad spectrum of users such as public agencies, local communities, civil society organizations, the private sector, academic environment, and personal users have been aiming to solve problems which occurred in location-based areas. GIS are important to get, combine, analyze and transfer the spatial data. Common use of PCs for personal needs, digital geography and improvements of software technologies, also the need to make socially acceptable business decisions facilitated development and widespread use of GIS applications. The main purpose of this paper is to discuss using areas and contribution potentials of GIS in enterprise-wide knowledge management processes.

  11. FEATURES OF INFORMATIVE PROVIDING IN THE MODERN EDUCATIONAL PROCESS

    Directory of Open Access Journals (Sweden)

    Vladimir D. Secerin

    2016-01-01

    Full Text Available The thesis of importance of informative constituent Comes into question as non-material assets in a postindustrial economy. Importance of limitations is shown in realization of technological processes to want of authenticity, objectivity and timeliness of actualization of knowledge of specialists. As recommendations on providing of accordance of actuality of on-line tutorial to the level of technological development on a production at the limitations determined by the system requirements of educational standard “From a teacher to a student”, the chart of forming of the creative thinking of student is offered as nooswear technologies are in organization of feed-back “From a student to a teacher “. 

  12. Advanced information processing system: Inter-computer communication services

    Science.gov (United States)

    Burkhardt, Laura; Masotto, Tom; Sims, J. Terry; Whittredge, Roy; Alger, Linda S.

    1991-01-01

    The purpose is to document the functional requirements and detailed specifications for the Inter-Computer Communications Services (ICCS) of the Advanced Information Processing System (AIPS). An introductory section is provided to outline the overall architecture and functional requirements of the AIPS and to present an overview of the ICCS. An overview of the AIPS architecture as well as a brief description of the AIPS software is given. The guarantees of the ICCS are provided, and the ICCS is described as a seven-layered International Standards Organization (ISO) Model. The ICCS functional requirements, functional design, and detailed specifications as well as each layer of the ICCS are also described. A summary of results and suggestions for future work are presented.

  13. Quantum Information Processing with Atomic Qubits and Optical Frequency Combs

    Science.gov (United States)

    Campbell, Wesley

    2010-03-01

    Pulsed optical fields from mode-locked lasers have found widespread use as tools for precision quantum control and are well suited for implementation in quantum information processing and quantum simulation. We experimentally demonstrate two distinct regimes of the interaction between hyperfine atomic ion qubits and stimulated Raman transitions driven by picosecond pulses from a far off- resonant mode-locked laser. In the weak pulse regime, the coherent accumulation of successive pulses from an optical frequency comb performs single qubit operations and is used to entangle two trapped atomic ion qubits. In the strong pulse regime, a single pulse is used to implement a fast (kicks. To entangle multiple ions, optical frequency combs operated near the strong pulse regime may be used to implement motion-mediated gates that can be performed much faster than a collective motional period.[4pt] [1] Garc'ia-Ripoll et al., PRL 91, 157901 (2003).[0pt] [2] Duan, PRL 93, 100502 (2004).

  14. Information processing in neural networks with dynamic synapses

    Science.gov (United States)

    Torres, J. J.; Mejias, J. F.; Marro, J.; Kappen, H. J.

    2009-01-01

    We review here our recent work over the effect of activity-dependent synaptic processes, such as short-time depression and facilitation, on the emergent behaviour of different neural networks. We have studied, for instance, how synaptic depression affects the dynamic properties of Hopfield-type recurrent networks. We demonstrated that synaptic depression induces a novel phase in which the neural activity jumps among the memory attractors [1], which can be related with the appearance of oscillations between up and down states in the brain [2]. If one also considers the possibility of facilitation, and depending on the balance of depression, facilitation, and the underlying noise, the network displays different behaviors, including associative memory and switching of activity between different attractors. We concluded that synaptic facilitation enhances the attractor instability in a way that (1) enhances the system adaptability to external stimuli, and (2) favors the retrieval of information with less error during short time intervals [3].

  15. Misfits in Organization Design: Information Processing as a Compensatory Mechanism

    Directory of Open Access Journals (Sweden)

    Ben Nanfeng Luo

    2013-04-01

    Full Text Available We propose a compensatory misfits theory which holds that an “over-fitting” organization structure can compensate for an “under-fitting” structure, thereby reducing the total misfit. In organizations, over-fit occurs when structural features misfit the core contingencies because the structural level is too high to fit the contingencies. An under-fit occurs when structural features misfit the contingencies because the structural level is too low. When an under-fit is compensated by an over-fit, the combination can produce performance outcomes that approximate those from fit. The reason inheres in information processing being a higher level factor that cuts across different contingencies and structural features that are mis-fitted to each other, so that compensation is possible. We identify the specific conditions that must be fulfilled for compensation to occur, and we discuss implications for organization design theory and practice.

  16. 75 FR 6683 - Notice of Proposed Information Collection: Comment Request; Technical Processing Requirements for...

    Science.gov (United States)

    2010-02-10

    ... Information Collection: Comment Request; Technical Processing Requirements for Multifamily Project Mortgage... information: Title of Proposal: Technical Processing Requirements for Multifamily Project Mortgage Insurance... information collection requirement described below will be submitted to the Office of Management and Budget...

  17. 78 FR 65695 - 30-Day Notice of Proposed Information Collection: Technical Processing Requirements for...

    Science.gov (United States)

    2013-11-01

    ... Information Collection: Technical Processing Requirements for Multifamily Project Mortgage Insurance AGENCY: Office of the Chief Information Officer, HUD. ACTION: Correction, notice. SUMMARY: On October 25, 2013 at... Collection Title of Information Collection: Technical Processing Requirements for Multifamily Project...

  18. Strategic-Decision Quality in Public Organizations: An Information Processing Perspective.

    NARCIS (Netherlands)

    B.R.J. George (Bert); S. Desmidt (Sebastian)

    2016-01-01

    textabstractThis study draws on information processing theory to investigate predictors of strategic-decision quality in public organizations. Information processing theory argues that (a) rational planning practices contribute to strategic-decision quality by injecting information into decision

  19. Social learners require process information to outperform individual learners.

    Science.gov (United States)

    Derex, Maxime; Godelle, Bernard; Raymond, Michel

    2013-03-01

    Humans exhibit a rich and complex material culture with no equivalent in animals. Also, social learning, a crucial requirement for culture, is particularly developed in humans and provides a means to accumulate knowledge over time and to develop advanced technologies. However, the type of social learning required for the evolution of this complex material culture is still debated. Here, using a complex and opaque virtual task, the efficiency of individual learning and two types of social learning (product-copying and process-copying) were compared. We found that (1) individuals from process-copying groups outperformed individuals from product-copying groups or individual learners, whereas access to product information was not a sufficient condition for providing an advantage to social learners compared to individual learners; (2) social learning did not seem to affect the exploration of the fitness landscape; (3) social learning led to strong within-group convergence and also to between-group convergence, and (4) individuals used widely variable social learning strategies. The implications of these results for cumulative culture evolution are discussed. © 2012 The Author(s). Evolution© 2012 The Society for the Study of Evolution.

  20. Using information technology to support knowledge conversion processes

    Directory of Open Access Journals (Sweden)

    2001-01-01

    Full Text Available One of the main roles of Information Technology in Knowledge Management programs is to accelerate the speed of knowledge transfer and creation. The Knowledge Management tools intend to help the processes of collecting and organizing the knowledge of groups of individuals in order to make this knowledge available in a shared base. Due to the largeness of the concept of knowledge, the software market for Knowledge Management seems to be quite confusing. Technology vendors are developing different implementations of the Knowledge Management concepts in their software products. Because of the variety and quantity of Knowledge Management tools available on the market, a typology may be a valuable aid to organizations that are looking for answers to specific needs. The objective of this article is to present guidelines that help to design such a typology. Knowledge Management solutions such as intranet systems, Electronic Document Management (EDM, groupware, workflow, artificial intelligence-based systems, Business Intelligence (BI, knowledge map systems, innovation support, competitive intelligence tools and knowledge portals are discussed in terms of their potential contributions to the processes of creating, registering and sharing knowledge. A number of Knowledge Management tools (Lotus Notes, Microsoft Exchange, Business Objects, Aris Toolset, File Net, Gingo, Vigipro, Sopheon have been checked. The potential of each category of solutions to support the transfer of tacit and/or explicit knowledge and to facilitate the knowledge conversion spiral in the sense of Nonaka and Takeuchi (1995 is discussed.

  1. [Role of medical information processing for quality assurance in obstetrics].

    Science.gov (United States)

    Selbmann, H K

    1983-06-01

    The paradigma of problem-orientated assuring of the professional quality of medical case is a kind of "control loop system" consisting of the following 5 steps: routine observation, identification of the problem, analysis of the problem, translation of problem solutions into daily practice and control as to whether the problem has been solved or eliminated. Medical data processing, which involves documentation, electronic data processing and statistics, can make substantial contributions especially to the steps of observation, identification of the problem, and follow-up control. Perinatal data collection, which has already been introduced in 6 Länder of the Federal Republic of Germany, has supplied ample proof of this. These operations were conducted under the heading "internal clinical assuring of quality with external aid". Those clinics who participated in this programme, were given the necessary aid in self-observation (questionnaires, clinical statistics), and they were also given comparative informative data to help them in identifying the problems (clinical profiles, etc.). It is entirely left to the responsibility of the clinics themselves--voluntary cooperation and guarantee of remaining anonymous being a matter of course -- to draw their own consequences from the collected data and to translate these into clinical everyday practice.

  2. Evaluation of kinetic constants of biomolecular interaction on optical surface plasmon resonance sensor with Newton Iteration Method

    Science.gov (United States)

    Zhao, Yuanyuan; Jiang, Guoliang; Hu, Jiandong; Hu, Fengjiang; Wei, Jianguang; Shi, Liang

    2010-10-01

    In the immunology, there are two important types of biomolecular interaction: antigens-antibodies and receptors-ligands. Monitoring the response rate and affinity of biomolecular interaction can help analyze the protein function, drug discover, genomics and proteomics research. Moreover the association rate constant and dissociation rate constant of receptors-ligands are the important parameters for the study of signal transmission between cells. Recent advances in bioanalyzer instruments have greatly simplified the measurement of the kinetics of molecular interactions. Non-destructive and real-time monitoring the response to evaluate the parameters between antigens and antibodies can be performed by using optical surface plasmon resonance (SPR) biosensor technology. This technology provides a quantitative analysis that is carried out rapidly with label-free high-throughput detection using the binding curves of antigens-antibodies. Consequently, the kinetic parameters of interaction between antigens and antibodies can be obtained. This article presents a low cost integrated SPR-based bioanalyzer (HPSPR-6000) designed by ourselves. This bioanalyzer is mainly composed of a biosensor TSPR1K23, a touch-screen monitor, a microprocessor PIC24F128, a microflow cell with three channels, a clamp and a photoelectric conversion device. To obtain the kinetic parameters, sensorgrams may be modeled using one of several binding models provided with BIAevaluation software 3.0, SensiQ or Autolab. This allows calculation of the association rate constant (ka) and the dissociation rate constant (kd). The ratio of ka to kd can be used to estimate the equilibrium constant. Another kind is the analysis software OriginPro, which can process the obtained data by nonlinear fitting and then get some correlative parameters, but it can't be embedded into the bioanalyzer, so the bioanalyzer don't support the use of OriginPro. This paper proposes a novel method to evaluate the kinetic parameters

  3. QM/MM based fitting of atomic polarizabilities for use in condensed-phase biomolecular simulation

    NARCIS (Netherlands)

    Vosmeer, C.R.; Rustenburg, A.S.; Rice, J.E.; Horn, H.W.; Swope, W.C.; Geerke, D.P.

    2012-01-01

    Accounting for electronic polarization effects in biomolecular simulation (by using a polarizable force field) can increase the accuracy of simulation results. However, the use of gas-phase estimates of atomic polarizabilities α

  4. Integrating Climate Information and Decision Processes for Regional Climate Resilience

    Science.gov (United States)

    Buizer, James; Goddard, Lisa; Guido, Zackry

    2015-04-01

    An integrated multi-disciplinary team of researchers from the University of Arizona and the International Research Institute for Climate and Society at Columbia University have joined forces with communities and institutions in the Caribbean, South Asia and West Africa to develop relevant, usable climate information and connect it to real decisions and development challenges. The overall objective of the "Integrating Climate Information and Decision Processes for Regional Climate Resilience" program is to build community resilience to negative impacts of climate variability and change. We produce and provide science-based climate tools and information to vulnerable peoples and the public, private, and civil society organizations that serve them. We face significant institutional challenges because of the geographical and cultural distance between the locale of climate tool-makers and the locale of climate tool-users and because of the complicated, often-inefficient networks that link them. To use an accepted metaphor, there is great institutional difficulty in coordinating the supply of and the demand for useful climate products that can be put to the task of building local resilience and reducing climate vulnerability. Our program is designed to reduce the information constraint and to initiate a linkage that is more demand driven, and which provides a set of priorities for further climate tool generation. A demand-driven approach to the co-production of appropriate and relevant climate tools seeks to meet the direct needs of vulnerable peoples as these needs have been canvassed empirically and as the benefits of application have been adequately evaluated. We first investigate how climate variability and climate change affect the livelihoods of vulnerable peoples. In so doing we assess the complex institutional web within which these peoples live -- the public agencies that serve them, their forms of access to necessary information, the structural constraints

  5. Visitor Intake Processing Re-write Management Information

    Data.gov (United States)

    Social Security Administration — The data store houses detail information pertaining to visitors' wait times, visits, calls, and other customer relationship information relating to VIPR and CHIP....

  6. A compact hard X-ray source for medical imaging and biomolecular studies

    International Nuclear Information System (INIS)

    Cline, D.B.; Green, M.A.; Kolonko, J.

    1995-01-01

    There are a large number of synchrotron light sources in the world. However, these sources are designed for physics, chemistry, and engineering studies. To our knowledge, none have been optimized for either medical imaging or biomolecular studies. There are special needs for these applications. We present here a preliminary design of a very compact source, small enough for a hospital or a biomolecular laboratory, that is suitable for these applications. (orig.)

  7. Fueling and Stabilizing a Biomolecular Motor-Powered Biosensor for Remote Detection Scenarios

    Science.gov (United States)

    2007-10-01

    National Lab, Naval Research Lab, ETH Zurich, AECOM New York) is to demonstrate a biomolecular motor-powered "smart dust" biosensor, which can be read...and Florida Society for Microscopy, Orlando, FL, (2006), invited H. Hess: "From Molecular Robotics to Active Self -assembly: Biomolecular Motors do the...as "hooks" which gain strength under load, DNA-DNA linkages act like " adhesive tape", and Nickel-His-tag linkages resemble "magnets". Translating the

  8. The Evolution of Contextual Information Processing in Informatics

    Directory of Open Access Journals (Sweden)

    Phivos Mylonas

    2018-02-01

    Full Text Available After many decades of flourishing computer science it is now rather evident that in a world dominated by different kinds of digital information, both applications and people are forced to seek new, innovative structures and forms of data management and organization. Following this blunt observation, researchers in informatics have strived over the recent years to tackle the non-unique and rather evolving notion of context, which aids significantly the data disambiguation process. Motivated by this environment, this work attempts to summarize and organize in a researcher-friendly tabular manner important or pioneer related research works deriving from diverse computational intelligence domains: Initially, we discuss the influence of context with respect to traditional low-level multimedia content analysis and search, and retrieval tasks and then we advance to the fields of overall computational context-awareness and the so-called human-generated contextual elements. In an effort to provide meaningful information to fellow researchers, this brief survey focuses on the impact of context in modern and popular computing undertakings of our era. More specifically, we focus to the presentation of a short review of visual context modeling methods, followed by the depiction of context-awareness in modern computing. Works dealing with the interpretation of context by human-generated interactions are also discussed herein, as the particular domain gains an ever-increasing proportion of related research nowadays. We then conclude the paper by providing a short discussion on (i the motivation behind the included context type categorization into three main pillars; (ii the findings and conclusions of the survey for each context category; and (iii a couple of brief advices derived from the survey for both interested developers and fellow researchers.

  9. The processing of visual and auditory information for reaching movements.

    Science.gov (United States)

    Glazebrook, Cheryl M; Welsh, Timothy N; Tremblay, Luc

    2016-09-01

    Presenting target and non-target information in different modalities influences target localization if the non-target is within the spatiotemporal limits of perceptual integration. When using auditory and visual stimuli, the influence of a visual non-target on auditory target localization is greater than the reverse. It is not known, however, whether or how such perceptual effects extend to goal-directed behaviours. To gain insight into how audio-visual stimuli are integrated for motor tasks, the kinematics of reaching movements towards visual or auditory targets with or without a non-target in the other modality were examined. When present, the simultaneously presented non-target could be spatially coincident, to the left, or to the right of the target. Results revealed that auditory non-targets did not influence reaching trajectories towards a visual target, whereas visual non-targets influenced trajectories towards an auditory target. Interestingly, the biases induced by visual non-targets were present early in the trajectory and persisted until movement end. Subsequent experimentation indicated that the magnitude of the biases was equivalent whether participants performed a perceptual or motor task, whereas variability was greater for the motor versus the perceptual tasks. We propose that visually induced trajectory biases were driven by the perceived mislocation of the auditory target, which in turn affected both the movement plan and subsequent control of the movement. Such findings provide further evidence of the dominant role visual information processing plays in encoding spatial locations as well as planning and executing reaching action, even when reaching towards auditory targets.

  10. A Quick-responsive DNA Nanotechnology Device for Bio-molecular Homeostasis Regulation.

    Science.gov (United States)

    Wu, Songlin; Wang, Pei; Xiao, Chen; Li, Zheng; Yang, Bing; Fu, Jieyang; Chen, Jing; Wan, Neng; Ma, Cong; Li, Maoteng; Yang, Xiangliang; Zhan, Yi

    2016-08-10

    Physiological processes such as metabolism, cell apoptosis and immune responses, must be strictly regulated to maintain their homeostasis and achieve their normal physiological functions. The speed with which bio-molecular homeostatic regulation occurs directly determines the ability of an organism to adapt to conditional changes. To produce a quick-responsive regulatory system that can be easily utilized for various types of homeostasis, a device called nano-fingers that facilitates the regulation of physiological processes was constructed using DNA origami nanotechnology. This nano-fingers device functioned in linked open and closed phases using two types of DNA tweezers, which were covalently coupled with aptamers that captured specific molecules when the tweezer arms were sufficiently close. Via this specific interaction mechanism, certain physiological processes could be simultaneously regulated from two directions by capturing one biofactor and releasing the other to enhance the regulatory capacity of the device. To validate the universal application of this device, regulation of the homeostasis of the blood coagulant thrombin was attempted using the nano-fingers device. It was successfully demonstrated that this nano-fingers device achieved coagulation buffering upon the input of fuel DNA. This nano-device could also be utilized to regulate the homeostasis of other types of bio-molecules.

  11. Mineralocorticoid receptor haplotype, estradiol, progesterone and emotional information processing.

    Science.gov (United States)

    Hamstra, Danielle A; de Kloet, E Ronald; Quataert, Ina; Jansen, Myrthe; Van der Does, Willem

    2017-02-01

    Carriers of MR-haplotype 1 and 3 (GA/CG; rs5522 and rs2070951) are more sensitive to the influence of oral contraceptives (OC) and menstrual cycle phase on emotional information processing than MR-haplotype 2 (CA) carriers. We investigated whether this effect is associated with estradiol (E2) and/or progesterone (P4) levels. Healthy MR-genotyped premenopausal women were tested twice in a counterbalanced design. Naturally cycling (NC) women were tested in the early-follicular and mid-luteal phase and OC-users during OC-intake and in the pill-free week. At both sessions E2 and P4 were assessed in saliva. Tests included implicit and explicit positive and negative affect, attentional blink accuracy, emotional memory, emotion recognition, and risky decision-making (gambling). MR-haplotype 2 homozygotes had higher implicit happiness scores than MR-haplotype 2 heterozygotes (p=0.031) and MR-haplotype 1/3 carriers (pinformation processing and P4 or E2 differed between sessions, as well as the moderating effects of the MR genotype. In the first session the MR-genotype moderated the influence of P4 on implicit anxiety (sr=-0.30; p=0.005): higher P4 was associated with reduction in implicit anxiety, but only in MR-haplotype 2 homozygotes (sr=-0.61; p=0.012). In the second session the MR-genotype moderated the influence of E2 on the recognition of facial expressions of happiness (sr=-0.21; p=0.035): only in MR-haplotype 1/3 higher E2 was correlated with happiness recognition (sr=0.29; p=0.005). In the second session higher E2 and P4 were negatively correlated with accuracy in lag2 trials of the attentional blink task (pinformation processing. This moderating effect may depend on the novelty of the situation. Copyright © 2016 Elsevier Ltd. All rights reserved.

  12. Unsupervised Neural Network Quantifies the Cost of Visual Information Processing.

    Directory of Open Access Journals (Sweden)

    Levente L Orbán

    Full Text Available Untrained, "flower-naïve" bumblebees display behavioural preferences when presented with visual properties such as colour, symmetry, spatial frequency and others. Two unsupervised neural networks were implemented to understand the extent to which these models capture elements of bumblebees' unlearned visual preferences towards flower-like visual properties. The computational models, which are variants of Independent Component Analysis and Feature-Extracting Bidirectional Associative Memory, use images of test-patterns that are identical to ones used in behavioural studies. Each model works by decomposing images of floral patterns into meaningful underlying factors. We reconstruct the original floral image using the components and compare the quality of the reconstructed image to the original image. Independent Component Analysis matches behavioural results substantially better across several visual properties. These results are interpreted to support a hypothesis that the temporal and energetic costs of information processing by pollinators served as a selective pressure on floral displays: flowers adapted to pollinators' cognitive constraints.

  13. Process Control Security in the Cybercrime Information Exchange NICC

    NARCIS (Netherlands)

    Luiijf, H.A.M.

    2009-01-01

    Detecting, investigating and prosecuting cybercrime? Extremely important, but not really the solution for the problem. Prevention is better! The sectors that have joined the Cybercrime Information Exchange have accepted the challenge of ensuring the effectiveness of the (information) security of

  14. Prosody's Contribution to Fluency: An Examination of the Theory of Automatic Information Processing

    Science.gov (United States)

    Schrauben, Julie E.

    2010-01-01

    LaBerge and Samuels' (1974) theory of automatic information processing in reading offers a model that explains how and where the processing of information occurs and the degree to which processing of information occurs. These processes are dependent upon two criteria: accurate word decoding and automatic word recognition. However, LaBerge and…

  15. Carbon–the first frontier of information processing

    Indian Academy of Sciences (India)

    Information is often encoded as an aperiodic chain of building blocks. Modern digital computers use bits as the building blocks, but in general the choice of building blocks depends on the nature of the information to be encoded. What are the optimal building blocks to encode structural information? This can be analysed by ...

  16. The Saturation of Several Universal Inequalities in Information-Processing

    International Nuclear Information System (INIS)

    Zhang Lin; Wu Jun-De; Fei Shao-Ming

    2015-01-01

    In this paper, we characterize the saturation of four universal inequalities in quantum information theory, including a variant version of strong subadditivity inequality for von Neumann entropy, the coherent information inequality, the Holevo quantity, and average entropy inequalities. These results shed new light on quantum information inequalities. (paper)

  17. Scalable quantum information processing with photons and atoms

    Science.gov (United States)

    Pan, Jian-Wei

    Over the past three decades, the promises of super-fast quantum computing and secure quantum cryptography have spurred a world-wide interest in quantum information, generating fascinating quantum technologies for coherent manipulation of individual quantum systems. However, the distance of fiber-based quantum communications is limited due to intrinsic fiber loss and decreasing of entanglement quality. Moreover, probabilistic single-photon source and entanglement source demand exponentially increased overheads for scalable quantum information processing. To overcome these problems, we are taking two paths in parallel: quantum repeaters and through satellite. We used the decoy-state QKD protocol to close the loophole of imperfect photon source, and used the measurement-device-independent QKD protocol to close the loophole of imperfect photon detectors--two main loopholes in quantum cryptograph. Based on these techniques, we are now building world's biggest quantum secure communication backbone, from Beijing to Shanghai, with a distance exceeding 2000 km. Meanwhile, we are developing practically useful quantum repeaters that combine entanglement swapping, entanglement purification, and quantum memory for the ultra-long distance quantum communication. The second line is satellite-based global quantum communication, taking advantage of the negligible photon loss and decoherence in the atmosphere. We realized teleportation and entanglement distribution over 100 km, and later on a rapidly moving platform. We are also making efforts toward the generation of multiphoton entanglement and its use in teleportation of multiple properties of a single quantum particle, topological error correction, quantum algorithms for solving systems of linear equations and machine learning. Finally, I will talk about our recent experiments on quantum simulations on ultracold atoms. On the one hand, by applying an optical Raman lattice technique, we realized a two-dimensional spin-obit (SO

  18. Self-assembling biomolecular catalysts for hydrogen production

    Science.gov (United States)

    Jordan, Paul C.; Patterson, Dustin P.; Saboda, Kendall N.; Edwards, Ethan J.; Miettinen, Heini M.; Basu, Gautam; Thielges, Megan C.; Douglas, Trevor

    2016-02-01

    The chemistry of highly evolved protein-based compartments has inspired the design of new catalytically active materials that self-assemble from biological components. A frontier of this biodesign is the potential to contribute new catalytic systems for the production of sustainable fuels, such as hydrogen. Here, we show the encapsulation and protection of an active hydrogen-producing and oxygen-tolerant [NiFe]-hydrogenase, sequestered within the capsid of the bacteriophage P22 through directed self-assembly. We co-opted Escherichia coli for biomolecular synthesis and assembly of this nanomaterial by expressing and maturing the EcHyd-1 hydrogenase prior to expression of the P22 coat protein, which subsequently self assembles. By probing the infrared spectroscopic signatures and catalytic activity of the engineered material, we demonstrate that the capsid provides stability and protection to the hydrogenase cargo. These results illustrate how combining biological function with directed supramolecular self-assembly can be used to create new materials for sustainable catalysis.

  19. Biomolecular immunoreactivity factor in antibody labelling design for potent radiopharmaceutical

    International Nuclear Information System (INIS)

    Best, M.P.

    1990-01-01

    Biomolecular factors' importance in optimum immunoconjugate design when high specific labelling is attempted is discussed. High specific labelling allows a small dose to be administered avoiding saturating antigen binding sites and to compensate for loss of bivalency etc. upon fragmentation. Clinical therapeutic and diagnostic applications result in adverse toxicity and poor scintigraphic resolution from the corrupted distribution upon labelling. DTPA is a strong chelator and forms a tight sequestering cryptate structure of small dimensions with the radioactive metals Tc-99m and In-111. Size severely affects permeability with reticuloendothelial accumulation. Compact scaled radiolabels are advantageous as potent payload moieties for radiotherapy as well as imaging. The antibody binding site requires close surface contact with its epitope to effect the specificity of immunoreaction. Binding site exposure to coupling chemistry can be directed via affinity purification methodology. The globular antibody with an amphiphilic structure presents conformed surface chemistry and is relatively inert requiring excess reaction stoichiometry. Radiolabelled antibodies to calcitonin (a 32 aminoacid polypeptide ectopic lung tumor antigen) in a solid phase immunoreactivity assay demonstrate 48 hours for 90% uptake. Site directed radiolabelling is of interest in preservation of immunoreactivity in protein engineering. 19 refs., 8 figs

  20. Dose controlled low energy electron irradiator for biomolecular films.

    Science.gov (United States)

    Kumar, S V K; Tare, Satej T; Upalekar, Yogesh V; Tsering, Thupten

    2016-03-01

    We have developed a multi target, Low Energy Electron (LEE), precise dose controlled irradiator for biomolecular films. Up to seven samples can be irradiated one after another at any preset electron energy and dose under UHV conditions without venting the chamber. In addition, one more sample goes through all the steps except irradiation, which can be used as control for comparison with the irradiated samples. All the samples are protected against stray electron irradiation by biasing them at -20 V during the entire period, except during irradiation. Ethernet based communication electronics hardware, LEE beam control electronics and computer interface were developed in house. The user Graphical User Interface to control the irradiation and dose measurement was developed using National Instruments Lab Windows CVI. The working and reliability of the dose controlled irradiator has been fully tested over the electron energy range of 0.5 to 500 eV by studying LEE induced single strand breaks to ΦX174 RF1 dsDNA.

  1. A Reaction Database for Small Molecule Pharmaceutical Processes Integrated with Process Information

    DEFF Research Database (Denmark)

    Papadakis, Emmanouil; Anantpinijwatna, Amata; Woodley, John

    2017-01-01

    This article describes the development of a reaction database with the objective to collect data for multiphase reactions involved in small molecule pharmaceutical processes with a search engine to retrieve necessary data in investigations of reaction-separation schemes, such as the role of organ...... the synthesis of ibuprofen, for which data on different reaction pathways have been retrieved from the database and compared using “green” chemistry metrics....... for each reaction and reference are also available in the database. Additionally, the retrieved information obtained from the database can be evaluated in terms of sustainability using well-known “green” metrics published in the scientific literature. The application of the database is illustrated through......This article describes the development of a reaction database with the objective to collect data for multiphase reactions involved in small molecule pharmaceutical processes with a search engine to retrieve necessary data in investigations of reaction-separation schemes, such as the role of organic...

  2. Understanding the provision and processing of information for information-intensive products as a basis for market segmentation

    OpenAIRE

    Hall, Daniel Edward

    2016-01-01

    This thesis helps to address the gap in literature relating to the study of the provision of information to consumers, consumer information search behaviour and consumer information processing and choice behaviour relating to information-intensive products. Throughout the thesis, wine is taken as an example of an information-intensive product. Through a series of four published papers in peer reviewed journals, the thesis examines how firms can control and manipulate the provision of informat...

  3. Stable isotope applications in biomolecular structure and mechanisms. A meeting to bring together producers and users of stable-isotope-labeled compounds to assess current and future needs

    Energy Technology Data Exchange (ETDEWEB)

    Trewhella, J.; Cross, T.A.; Unkefer, C.J. [eds.

    1994-12-01

    Knowledge of biomolecular structure is a prerequisite for understanding biomolecular function, and stable isotopes play an increasingly important role in structure determination of biological molecules. The first Conference on Stable Isotope Applications in Biomolecular Structure and Mechanisms was held in Santa Fe, New Mexico, March 27--31, 1994. More than 120 participants from 8 countries and 44 institutions reviewed significant developments, discussed the most promising applications for stable isotopes, and addressed future needs and challenges. Participants focused on applications of stable isotopes for studies of the structure and function of proteins, peptides, RNA, and DNA. Recent advances in NMR techniques neutron scattering, EPR, and vibrational spectroscopy were highlighted in addition to the production and synthesis of labeled compounds. This volume includes invited speaker and poster presentations as well as a set of reports from discussion panels that focused on the needs of the scientific community and the potential roles of private industry, the National Stable Isotope Resource, and the National High Magnetic Field Laboratory in serving those needs. This is the leading abstract. Individual papers are processed separately for the database.

  4. Stable isotope applications in biomolecular structure and mechanisms. A meeting to bring together producers and users of stable-isotope-labeled compounds to assess current and future needs

    International Nuclear Information System (INIS)

    Trewhella, J.; Cross, T.A.; Unkefer, C.J.

    1994-12-01

    Knowledge of biomolecular structure is a prerequisite for understanding biomolecular function, and stable isotopes play an increasingly important role in structure determination of biological molecules. The first Conference on Stable Isotope Applications in Biomolecular Structure and Mechanisms was held in Santa Fe, New Mexico, March 27--31, 1994. More than 120 participants from 8 countries and 44 institutions reviewed significant developments, discussed the most promising applications for stable isotopes, and addressed future needs and challenges. Participants focused on applications of stable isotopes for studies of the structure and function of proteins, peptides, RNA, and DNA. Recent advances in NMR techniques neutron scattering, EPR, and vibrational spectroscopy were highlighted in addition to the production and synthesis of labeled compounds. This volume includes invited speaker and poster presentations as well as a set of reports from discussion panels that focused on the needs of the scientific community and the potential roles of private industry, the National Stable Isotope Resource, and the National High Magnetic Field Laboratory in serving those needs. This is the leading abstract. Individual papers are processed separately for the database

  5. A variational approach to moment-closure approximations for the kinetics of biomolecular reaction networks

    Science.gov (United States)

    Bronstein, Leo; Koeppl, Heinz

    2018-01-01

    Approximate solutions of the chemical master equation and the chemical Fokker-Planck equation are an important tool in the analysis of biomolecular reaction networks. Previous studies have highlighted a number of problems with the moment-closure approach used to obtain such approximations, calling it an ad hoc method. In this article, we give a new variational derivation of moment-closure equations which provides us with an intuitive understanding of their properties and failure modes and allows us to correct some of these problems. We use mixtures of product-Poisson distributions to obtain a flexible parametric family which solves the commonly observed problem of divergences at low system sizes. We also extend the recently introduced entropic matching approach to arbitrary ansatz distributions and Markov processes, demonstrating that it is a special case of variational moment closure. This provides us with a particularly principled approximation method. Finally, we extend the above approaches to cover the approximation of multi-time joint distributions, resulting in a viable alternative to process-level approximations which are often intractable.

  6. A method for rapid quantitative assessment of biofilms with biomolecular staining and image analysis.

    Science.gov (United States)

    Larimer, Curtis; Winder, Eric; Jeters, Robert; Prowant, Matthew; Nettleship, Ian; Addleman, Raymond Shane; Bonheyo, George T

    2016-01-01

    The accumulation of bacteria in surface-attached biofilms can be detrimental to human health, dental hygiene, and many industrial processes. Natural biofilms are soft and often transparent, and they have heterogeneous biological composition and structure over micro- and macroscales. As a result, it is challenging to quantify the spatial distribution and overall intensity of biofilms. In this work, a new method was developed to enhance the visibility and quantification of bacterial biofilms. First, broad-spectrum biomolecular staining was used to enhance the visibility of the cells, nucleic acids, and proteins that make up biofilms. Then, an image analysis algorithm was developed to objectively and quantitatively measure biofilm accumulation from digital photographs and results were compared to independent measurements of cell density. This new method was used to quantify the growth intensity of Pseudomonas putida biofilms as they grew over time. This method is simple and fast, and can quantify biofilm growth over a large area with approximately the same precision as the more laborious cell counting method. Stained and processed images facilitate assessment of spatial heterogeneity of a biofilm across a surface. This new approach to biofilm analysis could be applied in studies of natural, industrial, and environmental biofilms.

  7. Biochemical Stability Analysis of Nano Scaled Contrast Agents Used in Biomolecular Imaging Detection of Tumor Cells

    Science.gov (United States)

    Kim, Jennifer; Kyung, Richard

    Imaging contrast agents are materials used to improve the visibility of internal body structures in the imaging process. Many agents that are used for contrast enhancement are now studied empirically and computationally by researchers. Among various imaging techniques, magnetic resonance imaging (MRI) has become a major diagnostic tool in many clinical specialties due to its non-invasive characteristic and its safeness in regards to ionizing radiation exposure. Recently, researchers have prepared aqueous fullerene nanoparticles using electrochemical methods. In this paper, computational simulations of thermodynamic stabilities of nano scaled contrast agents that can be used in biomolecular imaging detection of tumor cells are presented using nanomaterials such as fluorescent functionalized fullerenes. In addition, the stability and safety of different types of contrast agents composed of metal oxide a, b, and c are tested in the imaging process. Through analysis of the computational simulations, the stabilities of the contrast agents, determined by optimized energies of the conformations, are presented. The resulting numerical data are compared. In addition, Density Functional Theory (DFT) is used in order to model the electron properties of the compound.

  8. Simultaneous processing of information on multiple errors in visuomotor learning.

    Science.gov (United States)

    Kasuga, Shoko; Hirashima, Masaya; Nozaki, Daichi

    2013-01-01

    The proper association between planned and executed movements is crucial for motor learning because the discrepancies between them drive such learning. Our study explored how this association was determined when a single action caused the movements of multiple visual objects. Participants reached toward a target by moving a cursor, which represented the right hand's position. Once every five to six normal trials, we interleaved either of two kinds of visual perturbation trials: rotation of the cursor by a certain amount (±15°, ±30°, and ±45°) around the starting position (single-cursor condition) or rotation of two cursors by different angles (+15° and -45°, 0° and 30°, etc.) that were presented simultaneously (double-cursor condition). We evaluated the aftereffects of each condition in the subsequent trial. The error sensitivity (ratio of the aftereffect to the imposed visual rotation) in the single-cursor trials decayed with the amount of rotation, indicating that the motor learning system relied to a greater extent on smaller errors. In the double-cursor trials, we obtained a coefficient that represented the degree to which each of the visual rotations contributed to the aftereffects based on the assumption that the observed aftereffects were a result of the weighted summation of the influences of the imposed visual rotations. The decaying pattern according to the amount of rotation was maintained in the coefficient of each imposed visual rotation in the double-cursor trials, but the value was reduced to approximately 40% of the corresponding error sensitivity in the single-cursor trials. We also found a further reduction of the coefficients when three distinct cursors were presented (e.g., -15°, 15°, and 30°). These results indicated that the motor learning system utilized multiple sources of visual error information simultaneously to correct subsequent movement and that a certain averaging mechanism might be at work in the utilization process.

  9. Integrated Reporting and Assurance of Sustainability Information: An Experimental Study on Professional Investors’ Information Processing

    NARCIS (Netherlands)

    Reimsbach, D.; Hahn, R.; Gürtürk, A.

    2018-01-01

    Sustainability-related non-financial information is increasingly deemed value relevant. Against this background, two recent trends in non-financial reporting are frequently discussed: integrated reporting and assurance of sustainability information. Using an established framework of information

  10. 75 FR 20811 - Proposed Information Collection; Comment Request; Produce Processor Profiles of Fish Processing...

    Science.gov (United States)

    2010-04-21

    ... processing seasons. However, very limited information is available in a consolidated location or format about... DEPARTMENT OF COMMERCE National Oceanic and Atmospheric Administration Proposed Information Collection; Comment Request; Produce Processor Profiles of Fish Processing Plants in Alaska AGENCY: National...

  11. Discerning molecular interactions: A comprehensive review on biomolecular interaction databases and network analysis tools.

    Science.gov (United States)

    Miryala, Sravan Kumar; Anbarasu, Anand; Ramaiah, Sudha

    2018-02-05

    Computational analysis of biomolecular interaction networks is now gaining a lot of importance to understand the functions of novel genes/proteins. Gene interaction (GI) network analysis and protein-protein interaction (PPI) network analysis play a major role in predicting the functionality of interacting genes or proteins and gives an insight into the functional relationships and evolutionary conservation of interactions among the genes. An interaction network is a graphical representation of gene/protein interactome, where each gene/protein is a node, and interaction between gene/protein is an edge. In this review, we discuss the popular open source databases that serve as data repositories to search and collect protein/gene interaction data, and also tools available for the generation of interaction network, visualization and network analysis. Also, various network analysis approaches like topological approach and clustering approach to study the network properties and functional enrichment server which illustrates the functions and pathway of the genes and proteins has been discussed. Hence the distinctive attribute mentioned in this review is not only to provide an overview of tools and web servers for gene and protein-protein interaction (PPI) network analysis but also to extract useful and meaningful information from the interaction networks. Copyright © 2017 Elsevier B.V. All rights reserved.

  12. Entropy-enthalpy compensation: Role and ramifications in biomolecular ligand recognition and design

    Science.gov (United States)

    Chodera, John D.; Mobley, David L.

    2014-01-01

    Recent calorimetric studies of small molecule interactions with biomolecular targets have generated renewed interest in the phenomenon of entropy-enthalpy compensation. In these studies, entropic and enthalpic contributions to binding are observed to vary substantially and in an opposing manner as the ligand or protein is modified while the binding free energy varies little. In severe examples, engineered enthalpic gains can lead to completely compensating entropic penalties, frustrating ligand design. Here, we examine the evidence for compensation, as well as its potential origins, prevalence, severity, and ramifications for ligand engineering. We find the evidence for severe compensation to be weak in light of the large magnitude of and correlation between errors in experimental measurements of entropic and enthalpic contributions to binding, though a limited form of compensation may be common. Given the difficulty of predicting or measuring entropic and enthalpic changes to useful precision, or using this information in design, we recommend ligand engineering efforts instead focus on computational and experimental methodologies to directly assess changes in binding free energy. PMID:23654303

  13. A Starting Point for Fluorescence-Based Single-Molecule Measurements in Biomolecular Research

    Directory of Open Access Journals (Sweden)

    Alexander Gust

    2014-09-01

    Full Text Available Single-molecule fluorescence techniques are ideally suited to provide information about the structure-function-dynamics relationship of a biomolecule as static and dynamic heterogeneity can be easily detected. However, what type of single-molecule fluorescence technique is suited for which kind of biological question and what are the obstacles on the way to a successful single-molecule microscopy experiment? In this review, we provide practical insights into fluorescence-based single-molecule experiments aiming for scientists who wish to take their experiments to the single-molecule level. We especially focus on fluorescence resonance energy transfer (FRET experiments as these are a widely employed tool for the investigation of biomolecular mechanisms. We will guide the reader through the most critical steps that determine the success and quality of diffusion-based confocal and immobilization-based total internal reflection fluorescence microscopy. We discuss the specific chemical and photophysical requirements that make fluorescent dyes suitable for single-molecule fluorescence experiments. Most importantly, we review recently emerged photoprotection systems as well as passivation and immobilization strategies that enable the observation of fluorescently labeled molecules under biocompatible conditions. Moreover, we discuss how the optical single-molecule toolkit has been extended in recent years to capture the physiological complexity of a cell making it even more relevant for biological research.

  14. Review of Transducer Principles for Label-Free Biomolecular Interaction Analysis

    Directory of Open Access Journals (Sweden)

    Janos Vörös

    2011-07-01

    Full Text Available Label-free biomolecular interaction analysis is an important technique to study the chemical binding between e.g., protein and protein or protein and small molecule in real-time. The parameters obtained with this technique, such as the affinity, are important for drug development. While the surface plasmon resonance (SPR instruments are most widely used, new types of sensors are emerging. These developments are generally driven by the need for higher throughput, lower sample consumption or by the need of complimentary information to the SPR data. This review aims to give an overview about a wide range of sensor transducers, the working principles and the peculiarities of each technology, e.g., concerning the set-up, sensitivity, sensor size or required sample volume. Starting from optical technologies like the SPR and waveguide based sensors, acoustic sensors like the quartz crystal microbalance (QCM and the film bulk acoustic resonator (FBAR, calorimetric and electrochemical sensors are covered. Technologies long established in the market are presented together with those newly commercially available and with technologies in the early development stage. Finally, the commercially available instruments are summarized together with their sensitivity and the number of sensors usable in parallel and an outlook for potential future developments is given.

  15. Cyclical changes in emotional information processing in sleep and dreams.

    Science.gov (United States)

    Severino, S K; Bucci, W; Creelman, M L

    1989-01-01

    Our scientific tools have rapidly advanced in recent decades. Urine tests and hormone assays allow us to know exactly where a woman is in her menstrual cycle and to document precisely her hormonal rhythms. Sleep-laboratory techniques allow us to know exactly when someone is dreaming so that we can obtain that communication that Freud prized so highly. Furthermore, we now have quantifiable means to measure accessibility to nonverbal mental representations, which derive from important advances in theory and method in cognitive psychology in the last several decades. None of the studies we surveyed combined these tools. The sleep-laboratory studies did not document menstrual-cycle phase with either temperature or hormone levels. Moreover, the relationship between their findings and daily functioning is still unclear. The psychoanalytic study by Benedek and Rubenstein carefully documented cycle phase, but statements about fantasy and conflict were large and sweeping and the focus was on drive-related rather than information processing effects. Careful work must be done by modern investigators before the field of medical psychoanalysis can address the basic questions of mind-body functioning that are at issue here. We have presented one approach to entering the communication network of mind-brain functioning, that is, the application of the dual-code model to dreams, in the context of the influence of hormones across the menstrual cycle. Although prior research has demonstrated cyclical fluctuations of psychodynamic themes in dream content (Baron, 1977; Benedek & Rubenstein, 1939a, b; Hertz & Jensen, 1975; Lewis & Burns, 1975; Swanson & Foulkes, 1968), the existence of a cyclical cognitive pattern as regulated by gonadal function has not previously been explored. While the findings are preliminary and limited, this is the first study to provide evidence that there are psycholinguistic styles characteristic of different phases in the menstrual cycle, and that this

  16. Developmental Foundations and Clinical Applications of Social Information Processing: A Review.

    Science.gov (United States)

    Adrian, Molly; Lyon, Aaron R; Oti, Rosalind; Tininenko, Jennifer

    2010-07-01

    Social information processing has emerged as an important construct in understanding children's interpersonal functioning. This article reviews (a) the theoretical models guiding research, (b) the development of normative and atypical social problem solving, and (c) the connection between social information processing and individual differences in functioning. Finally, this review ends with a summary of efficacy of programs aimed at preventing social information processing biases or intervening with youth who display dysfunctional social information processing skills.

  17. Development and Validation of the Social Information Processing Application: A Web-Based Measure of Social Information Processing Patterns in Elementary School-Age Boys

    Science.gov (United States)

    Kupersmidt, Janis B.; Stelter, Rebecca; Dodge, Kenneth A.

    2011-01-01

    The purpose of this study was to evaluate the psychometric properties of an audio computer-assisted self-interviewing Web-based software application called the Social Information Processing Application (SIP-AP) that was designed to assess social information processing skills in boys in RD through 5th grades. This study included a racially and…

  18. 77 FR 13294 - Announcing Approval of Federal Information Processing Standard (FIPS) Publication 180-4, Secure...

    Science.gov (United States)

    2012-03-06

    ...-02] Announcing Approval of Federal Information Processing Standard (FIPS) Publication 180-4, Secure... approval of Federal Information Processing Standard (FIPS) Publication 180-4, Secure Hash Standard (SHS... Federal Information Processing Standard (FIPS) Publication 180-4, Secure Hash Standard (SHS). FIPS 180-4...

  19. 45 CFR 205.35 - Mechanized claims processing and information retrieval systems; definitions.

    Science.gov (United States)

    2010-10-01

    ... claims processing and information retrieval systems; definitions. Section 205.35 through 205.38 contain...: (a) A mechanized claims processing and information retrieval system, hereafter referred to as an automated application processing and information retrieval system (APIRS), or the system, means a system of...

  20. 10 CFR 1017.28 - Processing on Automated Information Systems (AIS).

    Science.gov (United States)

    2010-01-01

    ... 10 Energy 4 2010-01-01 2010-01-01 false Processing on Automated Information Systems (AIS). 1017.28... UNCLASSIFIED CONTROLLED NUCLEAR INFORMATION Physical Protection Requirements § 1017.28 Processing on Automated Information Systems (AIS). UCNI may be processed or produced on any AIS that complies with the guidance in OMB...

  1. Studies of the charge instabilities in the complex nano-objects: clusters and bio-molecular systems

    International Nuclear Information System (INIS)

    Manil, B.

    2007-11-01

    For the last 6 years, my main research works focused on i) the Coulomb instabilities and the fragmentation processes of fullerenes and clusters of fullerenes ii) the stability and the reactivity of complex bio-molecular systems. Concerning the clusters of fullerenes, which are van der Waals type clusters, we have shown that the multiply charged species, obtained in collisions with slow highly charged ions, keep their structural properties but become very good electric conductor. In another hand, with the aim to understand the role of the biologic environment at the molecular scale in the irradiation damage of complex biomolecules, we have studied the charge stabilities of clusters of small biomolecules and the dissociation processes of larger nano-hydrated biomolecules. Theses studies have shown that first, specific molecular recognition mechanisms continue to exist in gas phase and secondly, a small and very simple biochemical environment is enough to change the dynamics of instabilities. (author)

  2. Pre-Clinical Tests of an Integrated CMOS Biomolecular Sensor for Cardiac Diseases Diagnosis.

    Science.gov (United States)

    Lee, Jen-Kuang; Wang, I-Shun; Huang, Chi-Hsien; Chen, Yih-Fan; Huang, Nien-Tsu; Lin, Chih-Ting

    2017-11-26

    Coronary artery disease and its related complications pose great threats to human health. In this work, we aim to clinically evaluate a CMOS field-effect biomolecular sensor for cardiac biomarkers, cardiac-specific troponin-I (cTnI), N -terminal prohormone brain natriuretic peptide (NT-proBNP), and interleukin-6 (IL-6). The CMOS biosensor is implemented via a standard commercialized 0.35 μm CMOS process. To validate the sensing characteristics, in buffer conditions, the developed CMOS biosensor has identified the detection limits of IL-6, cTnI, and NT-proBNP as being 45 pM, 32 pM, and 32 pM, respectively. In clinical serum conditions, furthermore, the developed CMOS biosensor performs a good correlation with an enzyme-linked immuno-sorbent assay (ELISA) obtained from a hospital central laboratory. Based on this work, the CMOS field-effect biosensor poses good potential for accomplishing the needs of a point-of-care testing (POCT) system for heart disease diagnosis.

  3. Magneto-optical relaxation measurements for the characterization of biomolecular interactions

    Energy Technology Data Exchange (ETDEWEB)

    Aurich, K [Institute of Pharmacy, Ernst-Moritz-Arndt-University Greifswald, 17487 Greifswald (Germany); Gloeckl, G [Institute of Pharmacy, Ernst-Moritz-Arndt-University Greifswald, 17487 Greifswald (Germany); Romanus, E [Federal Institute for Occupational Safety and Health, 44149 Dortmund (Germany); Weber, P [Institute of Solid State Physics, Friedrich-Schiller-University Jena, 07743 Jena (Germany); Nagel, S [Institute of Pharmacy, Ernst-Moritz-Arndt-University Greifswald, 17487 Greifswald (Germany); Weitschies, W [Institute of Pharmacy, Ernst-Moritz-Arndt-University Greifswald, 17487 Greifswald (Germany)

    2006-09-27

    Measurements of the magneto-optical relaxation of ferrofluids (MORFF) were applied as a novel homogeneous immunoassay for the investigation of biomolecular interactions. The technique is based on magnetic nanoparticles (MNP) functionalized with antibodies. The relaxation time of the optical birefringence that occurs when a pulsed magnetic field is applied to the nanoparticle suspension depends on the particle size. This enables the detection of particle aggregates formed after the addition of the antigen coupling partner. MORFF size measurements on the original ferrofluid and its fractions obtained by magnetic fractionation are comparable with results from other methods such as atomic force microscopy and photon correlation spectroscopy. In kinetic studies, the binding properties of five antigens and their polyclonal antibodies were investigated: human immunoglobulin G (hIgG), human immunoglobulin M (hIgM), human Eotaxin (hEotaxin), human carcinoembryonic antigen (hCEA), and human insulin (hInsulin). The enlargement of the relaxation time observed during the coupling experiments is expressed in terms of a size distribution function, which includes MNP monomers as well as aggregates. The kinetic process can be described by a model of stepwise polymerization. The kinetic parameters obtained are compared to results of surface plasmon resonance measurements.

  4. Rapid, Low-Cost Detection of Zika Virus Using Programmable Biomolecular Components.

    Science.gov (United States)

    Pardee, Keith; Green, Alexander A; Takahashi, Melissa K; Braff, Dana; Lambert, Guillaume; Lee, Jeong Wook; Ferrante, Tom; Ma, Duo; Donghia, Nina; Fan, Melina; Daringer, Nichole M; Bosch, Irene; Dudley, Dawn M; O'Connor, David H; Gehrke, Lee; Collins, James J

    2016-05-19

    The recent Zika virus outbreak highlights the need for low-cost diagnostics that can be rapidly developed for distribution and use in pandemic regions. Here, we report a pipeline for the rapid design, assembly, and validation of cell-free, paper-based sensors for the detection of the Zika virus RNA genome. By linking isothermal RNA amplification to toehold switch RNA sensors, we detect clinically relevant concentrations of Zika virus sequences and demonstrate specificity against closely related Dengue virus sequences. When coupled with a novel CRISPR/Cas9-based module, our sensors can discriminate between viral strains with single-base resolution. We successfully demonstrate a simple, field-ready sample-processing workflow and detect Zika virus from the plasma of a viremic macaque. Our freeze-dried biomolecular platform resolves important practical limitations to the deployment of molecular diagnostics in the field and demonstrates how synthetic biology can be used to develop diagnostic tools for confronting global health crises. PAPERCLIP. Copyright © 2016 Elsevier Inc. All rights reserved.

  5. A cyber-linked undergraduate research experience in computational biomolecular structure prediction and design.

    Science.gov (United States)

    Alford, Rebecca F; Leaver-Fay, Andrew; Gonzales, Lynda; Dolan, Erin L; Gray, Jeffrey J

    2017-12-01

    Computational biology is an interdisciplinary field, and many computational biology research projects involve distributed teams of scientists. To accomplish their work, these teams must overcome both disciplinary and geographic barriers. Introducing new training paradigms is one way to facilitate research progress in computational biology. Here, we describe a new undergraduate program in biomolecular structure prediction and design in which students conduct research at labs located at geographically-distributed institutions while remaining connected through an online community. This 10-week summer program begins with one week of training on computational biology methods development, transitions to eight weeks of research, and culminates in one week at the Rosetta annual conference. To date, two cohorts of students have participated, tackling research topics including vaccine design, enzyme design, protein-based materials, glycoprotein modeling, crowd-sourced science, RNA processing, hydrogen bond networks, and amyloid formation. Students in the program report outcomes comparable to students who participate in similar in-person programs. These outcomes include the development of a sense of community and increases in their scientific self-efficacy, scientific identity, and science values, all predictors of continuing in a science research career. Furthermore, the program attracted students from diverse backgrounds, which demonstrates the potential of this approach to broaden the participation of young scientists from backgrounds traditionally underrepresented in computational biology.

  6. Toxicity evaluation of PEDOT/biomolecular composites intended for neural communication electrodes

    Energy Technology Data Exchange (ETDEWEB)

    Asplund, M; Thaning, E; Von Holst, H [Division of Neuronic Engineering, School of Technology and Health, Royal Institute of Technology, SE-14152 Huddinge (Sweden); Lundberg, J [Section for Neuroradiology, R2:02 NKK-lab, Department of Clinical Neuroscience, Karolinska Institutet, Karolinska University Hospital, Solna, SE-171 76, Stockholm (Sweden); Sandberg-Nordqvist, A C [Section of Clinical CNS Research, Department of Clinical Neuroscience, Karolinska Institutet, Karolinska University Hospital, Solna, SE-171 76, Stockholm (Sweden); Kostyszyn, B [Center for Hearing and Communication Research, Department of Clinical Neuroscience, Karolinska Institutet, Karolinska University Hospital, M1:01, SE-171 76 Stockholm (Sweden); Inganaes, O, E-mail: maria.asplund@sth.kth.s [Biomolecular and Organic Electronics, IFM, Linkoeping University, SE-581 83 Linkoeping (Sweden)

    2009-08-15

    Electrodes coated with the conducting polymer poly(3,4-ethylene dioxythiophene) (PEDOT) possess attractive electrochemical properties for stimulation or recording in the nervous system. Biomolecules, added as counter ions in electropolymerization, could further improve the biomaterial properties, eliminating the need for surfactant counter ions in the process. Such PEDOT/biomolecular composites, using heparin or hyaluronic acid, have previously been investigated electrochemically. In the present study, their biocompatibility is evaluated. An agarose overlay assay using L929 fibroblasts, and elution and direct contact tests on human neuroblastoma SH-SY5Y cells are applied to investigate cytotoxicity in vitro. PEDOT:heparin was further evaluated in vivo through polymer-coated implants in rodent cortex. No cytotoxic response was seen to any of the PEDOT materials tested. The examination of cortical tissue exposed to polymer-coated implants showed extensive glial scarring irrespective of implant material (Pt:polymer or Pt). However, quantification of immunological response, through distance measurements from implant site to closest neuron and counting of ED1+ cell density around implant, was comparable to those of platinum controls. These results indicate that PEDOT:heparin surfaces were non-cytotoxic and show no marked difference in immunological response in cortical tissue compared to pure platinum controls.

  7. A cyber-linked undergraduate research experience in computational biomolecular structure prediction and design.

    Directory of Open Access Journals (Sweden)

    Rebecca F Alford

    2017-12-01

    Full Text Available Computational biology is an interdisciplinary field, and many computational biology research projects involve distributed teams of scientists. To accomplish their work, these teams must overcome both disciplinary and geographic barriers. Introducing new training paradigms is one way to facilitate research progress in computational biology. Here, we describe a new undergraduate program in biomolecular structure prediction and design in which students conduct research at labs located at geographically-distributed institutions while remaining connected through an online community. This 10-week summer program begins with one week of training on computational biology methods development, transitions to eight weeks of research, and culminates in one week at the Rosetta annual conference. To date, two cohorts of students have participated, tackling research topics including vaccine design, enzyme design, protein-based materials, glycoprotein modeling, crowd-sourced science, RNA processing, hydrogen bond networks, and amyloid formation. Students in the program report outcomes comparable to students who participate in similar in-person programs. These outcomes include the development of a sense of community and increases in their scientific self-efficacy, scientific identity, and science values, all predictors of continuing in a science research career. Furthermore, the program attracted students from diverse backgrounds, which demonstrates the potential of this approach to broaden the participation of young scientists from backgrounds traditionally underrepresented in computational biology.

  8. Measurement of biomolecular diffusion in extracellular matrix condensed by fibroblasts using fluorescence correlation spectroscopy.

    Directory of Open Access Journals (Sweden)

    Takanori Kihara

    Full Text Available The extracellular matrix (ECM comprises the heterogeneous environment outside of cells in a biological system. The ECM is dynamically organized and regulated, and many biomolecules secreted from cells diffuse throughout the ECM, regulating a variety of cellular processes. Therefore, investigation of the diffusive behaviors of biomolecules in the extracellular environment is critical. In this study, we investigated the diffusion coefficients of biomolecules of various sizes, measuring from 1 to 10 nm in radius, by fluorescence correlation spectroscopy in contracted collagen gel caused by fibroblasts, a traditional culture model of dynamic rearrangement of collagen fibers. The diffusion coefficients of the biomolecules in control collagen gel without cells decreased slightly as compared to those in solution, while the diffusion coefficients of biomolecules in the contracted gel at the cell vicinity decreased dramatically. Additionally, the diffusion coefficients of biomolecules were inversely correlated with molecular radius. In collagen gels populated with fibroblasts, the diffusion coefficient at the cell vicinity clearly decreased in the first 24 h of culture. Furthermore, molecular diffusion was greatly restricted, with a central focus on the populated cells. By using the obtained diffusion coefficients of biomolecules, we calculated the collagen fiber condensation ratio by fibroblasts in the cell vicinity at 3 days of culture to represent a 52-fold concentration. Thus, biomolecular diffusion is restricted in the vicinity of the cells where collagen fibers are highly condensed.

  9. Biomolecular detection using a metal semiconductor field effect transistor

    Science.gov (United States)

    Estephan, Elias; Saab, Marie-Belle; Buzatu, Petre; Aulombard, Roger; Cuisinier, Frédéric J. G.; Gergely, Csilla; Cloitre, Thierry

    2010-04-01

    In this work, our attention was drawn towards developing affinity-based electrical biosensors, using a MESFET (Metal Semiconductor Field Effect Transistor). Semiconductor (SC) surfaces must be prepared before the incubations with biomolecules. The peptides route was adapted to exceed and bypass the limits revealed by other types of surface modification due to the unwanted unspecific interactions. As these peptides reveal specific recognition of materials, then controlled functionalization can be achieved. Peptides were produced by phage display technology using a library of M13 bacteriophage. After several rounds of bio-panning, the phages presenting affinities for GaAs SC were isolated; the DNA of these specific phages were sequenced, and the peptide with the highest affinity was synthesized and biotinylated. To explore the possibility of electrical detection, the MESFET fabricated with the GaAs SC were used to detect the streptavidin via the biotinylated peptide in the presence of the bovine Serum Albumin. After each surface modification step, the IDS (current between the drain and the source) of the transistor was measured and a decrease in the intensity was detected. Furthermore, fluorescent microscopy was used in order to prove the specificity of this peptide and the specific localisation of biomolecules. In conclusion, the feasibility of producing an electrical biosensor using a MESFET has been demonstrated. Controlled placement, specific localization and detection of biomolecules on a MESFET transistor were achieved without covering the drain and the source. This method of functionalization and detection can be of great utility for biosensing application opening a new way for developing bioFETs (Biomolecular Field-Effect Transistor).

  10. The Role of the Individual in the Social Information Process

    Directory of Open Access Journals (Sweden)

    Christian Fuchs

    2003-02-01

    Full Text Available Abstract: The aim of this paper is to point out which role the individual plays in the generation of information in social systems. First, it is argued that the individual is a social, self-conscious, creative, reflective, cultural, symbol- and language-using, active natural, producing, labouring, objective, corporeal, living, real, sensuous, visionary, imaginative, designing, co-operative being that makes its own history and can strive towards freedom and autonomy. Based on these assumptions the re-creation/self-organisation of social systems is described as a dialectic of actions and social structures and as a dialectic of individual information and social information. The individual enters economic, political and cultural relationships that result in the emergence and differentiation of social (i.e. economic, political and cultural information which enables and constrains individual actions and thinking. Individuals as actors in social systems are indispensable for social self-organisation.

  11. Ion-Cavity Integration for Quantum Information Processing

    National Research Council Canada - National Science Library

    Chapman, Michael S

    2005-01-01

    .... The theoretical effort of this program focused on two goals: (1) exploring alternative strategies for atomic and optical-based systems capable of storing and manipulating quantum information, and (2...

  12. Development of an informatics infrastructure for data exchange of biomolecular simulations: Architecture, data models and ontology.

    Science.gov (United States)

    Thibault, J C; Roe, D R; Eilbeck, K; Cheatham, T E; Facelli, J C

    2015-01-01

    Biomolecular simulations aim to simulate structure, dynamics, interactions, and energetics of complex biomolecular systems. With the recent advances in hardware, it is now possible to use more complex and accurate models, but also reach time scales that are biologically significant. Molecular simulations have become a standard tool for toxicology and pharmacology research, but organizing and sharing data - both within the same organization and among different ones - remains a substantial challenge. In this paper we review our recent work leading to the development of a comprehensive informatics infrastructure to facilitate the organization and exchange of biomolecular simulations data. Our efforts include the design of data models and dictionary tools that allow the standardization of the metadata used to describe the biomedical simulations, the development of a thesaurus and ontology for computational reasoning when searching for biomolecular simulations in distributed environments, and the development of systems based on these models to manage and share the data at a large scale (iBIOMES), and within smaller groups of researchers at laboratory scale (iBIOMES Lite), that take advantage of the standardization of the meta data used to describe biomolecular simulations.

  13. Constructing Topic Models of Internet of Things for Information Processing

    OpenAIRE

    Xin, Jie; Cui, Zhiming; Zhang, Shukui; He, Tianxu; Li, Chunhua; Huang, Haojing

    2014-01-01

    Internet of Things (IoT) is regarded as a remarkable development of the modern information technology. There is abundant digital products data on the IoT, linking with multiple types of objects/entities. Those associated entities carry rich information and usually in the form of query records. Therefore, constructing high quality topic hierarchies that can capture the term distribution of each product record enables us to better understand users’ search intent and benefits tasks such as taxon...

  14. Advances in intelligent process-aware information systems concepts, methods, and technologies

    CERN Document Server

    Oberhauser, Roy; Reichert, Manfred

    2017-01-01

    This book provides a state-of-the-art perspective on intelligent process-aware information systems and presents chapters on specific facets and approaches applicable to such systems. Further, it highlights novel advances and developments in various aspects of intelligent process-aware information systems and business process management systems. Intelligence capabilities are increasingly being integrated into or created in many of today’s software products and services. Process-aware information systems provide critical computing infrastructure to support the various processes involved in the creation and delivery of business products and services. Yet the integration of intelligence capabilities into process-aware information systems is a non-trivial yet necessary evolution of these complex systems. The book’s individual chapters address adaptive process management, case management processes, autonomically-capable processes, process-oriented information logistics, process recommendations, reasoning over ...

  15. The effects of posture and cognitive information processing from ...

    African Journals Online (AJOL)

    On the contrary, intense symptoms of discomfort/pain have been reported to disrupt cognitive processing and lower work performance. This study focused on the influence of time, awkward posture, and cognitive processing utilizing different senses (auditory and visual) on measured physical, perceptual and performance ...

  16. Harvesting Social Signals to Inform Peace Processes Implementation and Monitoring.

    Science.gov (United States)

    Nigam, Aastha; Dambanemuya, Henry K; Joshi, Madhav; Chawla, Nitesh V

    2017-12-01

    Peace processes are complex, protracted, and contentious involving significant bargaining and compromising among various societal and political stakeholders. In civil war terminations, it is pertinent to measure the pulse of the nation to ensure that the peace process is responsive to citizens' concerns. Social media yields tremendous power as a tool for dialogue, debate, organization, and mobilization, thereby adding more complexity to the peace process. Using Colombia's final peace agreement and national referendum as a case study, we investigate the influence of two important indicators: intergroup polarization and public sentiment toward the peace process. We present a detailed linguistic analysis to detect intergroup polarization and a predictive model that leverages Tweet structure, content, and user-based features to predict public sentiment toward the Colombian peace process. We demonstrate that had proaccord stakeholders leveraged public opinion from social media, the outcome of the Colombian referendum could have been different.

  17. Harvesting Social Signals to Inform Peace Processes Implementation and Monitoring

    Science.gov (United States)

    Nigam, Aastha; Dambanemuya, Henry K.; Joshi, Madhav; Chawla, Nitesh V.

    2017-01-01

    Abstract Peace processes are complex, protracted, and contentious involving significant bargaining and compromising among various societal and political stakeholders. In civil war terminations, it is pertinent to measure the pulse of the nation to ensure that the peace process is responsive to citizens' concerns. Social media yields tremendous power as a tool for dialogue, debate, organization, and mobilization, thereby adding more complexity to the peace process. Using Colombia's final peace agreement and national referendum as a case study, we investigate the influence of two important indicators: intergroup polarization and public sentiment toward the peace process. We present a detailed linguistic analysis to detect intergroup polarization and a predictive model that leverages Tweet structure, content, and user-based features to predict public sentiment toward the Colombian peace process. We demonstrate that had proaccord stakeholders leveraged public opinion from social media, the outcome of the Colombian referendum could have been different. PMID:29235916

  18. Information from processes about the nature of information creation, use, and representation

    CERN Document Server

    Losee, Robert M

    2012-01-01

    Information is an important concept that is studied extensively across a range of disciplines, from the physical sciences to genetics to psychology to epistemology. Information continues to increase in importance, and the present age has been referred to as the ""Information Age."" One may understand information in a variety of ways. For some, information is found in facts that were previously unknown. For others, a fact must have some economic value to be considered information. Other people emphasize the movement through a communication channel from one location to another when describing in

  19. Process quality control. Modern information technology to improve power plant efficiency; Prozessgueteueberwachung. Moderne Informations-systeme zur Effizienzsteigerung der Kraftwerksprozesse

    Energy Technology Data Exchange (ETDEWEB)

    Knieschke, Andreas [Vattenfall Europe PowerConsult GmbH, Vetschau (Germany); Deeskow, Peter [Evonik Energy Services GmbH, Essen (Germany); Hufmann, Theo [E.ON Engineering GmbH, Gelsenkirchen (Germany); Leusden, Christoph Pels [Siemens AG, Erlangen (Germany)

    2009-07-01

    In order to achieve the best possible efficiency of their plants, an increasing number of power plant operators employ performance monitoring systems (PM systems). This term is connected with modern IT applications which usually process online transmitted process data, perform performance calculations on this basis and in result provide very precise information of the current quality of energy conversion process. (orig.)

  20. Professional development of future teacher of physical culture in informatively-educational space: information technologies in educational process

    Directory of Open Access Journals (Sweden)

    Dragnev Y. V.

    2012-07-01

    Full Text Available A role and value of informative educational space in the professional becoming of future teacher of physical culture is considered. It is well-proven that such environment is characterized: by the volume of educational services, power, intensity, set of terms. It is shown that higher professional education requires perfection of the use of information technologies, programmatic and informative providing of educational process. It is set that modern information technologies are the mean of increase of efficiency of management all of spheres of public activity. It is marked that the process of forming of informative culture needs the personally oriented and differentiated going near the choice of the teaching programs. Directions of the use of information technologies in the controlled from distance teaching are selected. The ways of intensification of educational process are recommended through the increase of interest of students to the study of concrete discipline, increase of volume of independent work, increase of closeness of educational material.

  1. INFORMATIONAL AND COMMUNICATIVE COMPETENCE FORMATION IN THE TEXT ACTIVITY PROCESS

    Directory of Open Access Journals (Sweden)

    A. A. Melikhova

    2013-01-01

    Full Text Available The paper is devoted to the problem of fostering the informational and communicative competence, regarded as the capability of meaningful work with information, its personalized understanding and implementation in professional activity. As a solution to the problem, the author indicates the developing potential of text activity, performed in a dialog enriched by ideas of hermeneutics and meaning-making. The competence in question should be developed stage-by-stage by role-playing the professionally focused situations; applying the symbolic contextual approach by A. A. Verbitsky; using different tasks to enable understanding, comprehension of new semantics, correlation with students' personal experience; and promoting self-understanding, selfawareness and value attitude. The above activities  should result in training competent experts with a broad cultural outlook and capability to adapt to and work in the modern information society, find creative solutions to the complex challenges, and communicate in the global cross-cultural environment. 

  2. The quest for the next information processing technology

    Energy Technology Data Exchange (ETDEWEB)

    Welser, Jeffrey J. [IBM and SRC-NRI (United States); Bourianoff, George I. [Intel Corporation (United States); Zhirnov, Victor V.; Cavin, Ralph Keary [Semiconductor Research Corporation, Research Operations (United States)], E-mail: cavin@src.org

    2008-01-15

    Fundamental physical considerations indicate that the scaling of devices that use electron charge as the information carrier will limit within the next one to two decades. The Nanoelectronics Research Initiative (NRI), a joint industry-government program, has been developed to fund university research seeking devices that utilize alternative physical information carriers or non-equilibrium switching mechanisms to continue the historical cost and performance trends of information technology. Three research centers have been established to pursue five research vectors that have been identified as critical to the effort to replace the electronic switch. A brief history and rationale for NRI is given and the projects currently underway are described in the context of the five research vectors.

  3. Ferroelectric tunnel junctions for information storage and processing.

    Science.gov (United States)

    Garcia, Vincent; Bibes, Manuel

    2014-07-24

    Computer memory that is non-volatile and therefore able to retain its information even when switched off enables computers that do not need to be booted up. One of the technologies for such applications is ferroelectric random access memories, where information is stored as ferroelectric polarization. To miniaturize such devices to the size of a few nanometres, ferroelectric tunnel junctions have seen considerable interest. There, the electric polarization determines the electrical resistance of these thin films, switching the current on and off. With control over other parameters such as magnetism also being possible, ferroelectric tunnel junctions represent a promising and flexible device design.

  4. Conference on information processing and management of uncertainty

    CERN Document Server

    Marsala, Christophe; Rifqi, Maria; Yager, Ronald R

    2008-01-01

    Intelligent systems are necessary to handle modern computer-based technologies managing information and knowledge. This book discusses the theories required to help provide solutions to difficult problems in the construction of intelligent systems. Particular attention is paid to situations in which the available information and data may be imprecise, uncertain, incomplete or of a linguistic nature. The main aspects of clustering, classification, summarization, decision making and systems modeling are also addressed. Topics covered in the book include fundamental issues in uncertainty, the rap

  5. Process and building information modelling in the construction industry by using information delivery manuals and model view definitions

    DEFF Research Database (Denmark)

    Karlshøj, Jan

    2012-01-01

    of information and specifying exactly which objects and properties are needed for each process and which information is produced by the processes. The present study is based on reviewing the existing methodology of Information Delivery Manuals (IDM) from Buildingsmart, which also is also an ISO standard 29481....... The project-based approach is an obstacle to standardized processes and exchange requirements, which are vital elements in the methodology of making IDMs. Several of the proposed IDMs have been developed or sponsored by public clients that have a long-term perspective and the ability to push implementation...

  6. Architecture of transcriptional regulatory circuits is knitted over the topology of bio-molecular interaction networks

    DEFF Research Database (Denmark)

    Soberano de Oliveira, Ana Paula; Patil, Kiran Raosaheb; Nielsen, Jens

    2008-01-01

    is to use the topology of bio-molecular interaction networks in order to constrain the solution space. Such approaches systematically integrate the existing biological knowledge with the 'omics' data. Results: Here we introduce a hypothesis-driven method that integrates bio-molecular network topology...... with transcriptome data, thereby allowing the identification of key biological features (Reporter Features) around which transcriptional changes are significantly concentrated. We have combined transcriptome data with different biological networks in order to identify Reporter Gene Ontologies, Reporter Transcription...... Factors, Reporter Proteins and Reporter Complexes, and use this to decipher the logic of regulatory circuits playing a key role in yeast glucose repression and human diabetes. Conclusion: Reporter Features offer the opportunity to identify regulatory hot-spots in bio-molecular interaction networks...

  7. Toward in silico biomolecular manipulation through static modes: atomic scale characterization of HIV-1 protease flexibility.

    Science.gov (United States)

    Brut, Marie; Estève, Alain; Landa, Georges; Djafari Rouhani, Mehdi

    2014-03-20

    Probing biomolecular flexibility with atomic-scale resolution is a challenging task in current computational biology for fundamental understanding and prediction of biomolecular interactions and associated functions. This paper makes use of the static mode method to study HIV-1 protease considered as a model system to investigate the full biomolecular flexibility at the atomic scale, the screening of active site biomechanical properties, the blind prediction of allosteric sites, and the design of multisite strategies to target deformations of interest. Relying on this single calculation run of static modes, we demonstrate that in silico predictive design of an infinite set of complex excitation fields is reachable, thanks to the storage of the static modes in a data bank that can be used to mimic single or multiatom contact and efficiently anticipate conformational changes arising from external stimuli. All along this article, we compare our results to data previously published and propose a guideline for efficient, predictive, and custom in silico experiments.

  8. Generation of optical coherent state superpositions for quantum information processing

    DEFF Research Database (Denmark)

    Tipsmark, Anders

    2012-01-01

    I dette projektarbejde med titlen “Generation of optical coherent state superpositions for quantum information processing” har målet været at generere optiske kat-tilstande. Dette er en kvantemekanisk superpositions tilstand af to koherente tilstande med stor amplitude. Sådan en tilstand er...

  9. Improving the software fault localization process through testability information

    NARCIS (Netherlands)

    Gonzalez-Sanchez, A.; Abreu, R.; Gross, H.; Van Gemund, A.

    2010-01-01

    When failures occur during software testing, automated software fault localization helps to diagnose their root causes and identify the defective components of a program to support debugging. Diagnosis is carried out by selecting test cases in such way that their pass or fail information will narrow

  10. Information-triggered Co-evolution: A Combined Process Perspective

    DEFF Research Database (Denmark)

    Cash, Philip; Gonçalves, Milene

    2017-01-01

    Core elements of design work include the development of problem/solution understanding, as well as information and knowledge sharing activities. However, their interrelationships have been little explored. As such, this work aims to take the first steps towards a more integrated evaluation and de...

  11. Advanced applications of natural language processing for performing information extraction

    CERN Document Server

    Rodrigues, Mário

    2015-01-01

    This book explains how can be created information extraction (IE) applications that are able to tap the vast amount of relevant information available in natural language sources: Internet pages, official documents such as laws and regulations, books and newspapers, and social web. Readers are introduced to the problem of IE and its current challenges and limitations, supported with examples. The book discusses the need to fill the gap between documents, data, and people, and provides a broad overview of the technology supporting IE. The authors present a generic architecture for developing systems that are able to learn how to extract relevant information from natural language documents, and illustrate how to implement working systems using state-of-the-art and freely available software tools. The book also discusses concrete applications illustrating IE uses.   ·         Provides an overview of state-of-the-art technology in information extraction (IE), discussing achievements and limitations for t...

  12. Why genetic information processing could have a quantum basis

    Indian Academy of Sciences (India)

    Unknown

    fer much wear and tear as a result. The double helical structure of DNA, with the nucleotide bases hidden inside, carefully protects the information until it is required. Also, DNA replication is much less error-prone than pro- tein synthesis. This is only part of the story. Translation between DNA and protein languages is more ...

  13. An audit of the informed consent process in postgraduate ...

    African Journals Online (AJOL)

    Background: Informed consent ensures respect for individual autonomy and safeguards against abuses of human participants. However, the high prevalence of poverty, inaccessibility of healthcare services, diseases, social insecurity and low literacy in developing countries such as Kenya increases participants' ...

  14. Social Networks as Information Source for the Purchase Decision Process

    Directory of Open Access Journals (Sweden)

    Camila Leoni Nascimento

    2014-12-01

    Full Text Available The social networks have caused changes in the consumption habits and in the ways of relationship among companies and consumers, emerging a more demanding and informed consumer. In this paper it is aimed to assess the social networks as a source of information for the purchase of goods or services. In the study it was applied a research of exploratory nature through the survey method, conducted through personal interviews using a questionnaire with closed-ended questions. The sample of non-probabilistic type was comprised of 200 individuals from a higher education institution of São Paulo State hinterland. The survey data were analyzed descriptively. Overall, the results showed the use of social networks as a source of information search, in which the main motive is the practicality. The results corroborate the studies of Kotler and Keller (2006 when they state that the consumer seeks information on social networks to help him in the purchase, as Edelman and Hirshberg (2006 when approaching the user confidence in their friends’ opinion. For future works it is recommended to check what strategies and in what ways the companies could work in order to provide more detailed data to Internet users, aiming to support them in the decision

  15. A theory-informed, process-oriented Resident Scholarship Program.

    Science.gov (United States)

    Thammasitboon, Satid; Darby, John B; Hair, Amy B; Rose, Karen M; Ward, Mark A; Turner, Teri L; Balmer, Dorene F

    2016-01-01

    The Accreditation Council for Graduate Medical Education requires residency programs to provide curricula for residents to engage in scholarly activities but does not specify particular guidelines for instruction. We propose a Resident Scholarship Program that is framed by the self-determination theory (SDT) and emphasize the process of scholarly activity versus a scholarly product. The authors report on their longitudinal Resident Scholarship Program, which aimed to support psychological needs central to SDT: autonomy, competence, and relatedness. By addressing those needs in program aims and program components, the program may foster residents' intrinsic motivation to learn and to engage in scholarly activity. To this end, residents' engagement in scholarly processes, and changes in perceived autonomy, competence, and relatedness were assessed. Residents engaged in a range of scholarly projects and expressed positive regard for the program. Compared to before residency, residents felt more confident in the process of scholarly activity, as determined by changes in increased perceived autonomy, competence, and relatedness. Scholarly products were accomplished in return for a focus on scholarly process. Based on our experience, and in line with the SDT, supporting residents' autonomy, competence, and relatedness through a process-oriented scholarship program may foster the curiosity, inquisitiveness, and internal motivation to learn that drives scholarly activity and ultimately the production of scholarly products.

  16. Perioperative blood ordering optimization process using information from an anesthesia information management system.

    Science.gov (United States)

    Rinehart, Joseph B; Lee, Tiffany C; Kaneshiro, Kayleigh; Tran, Minh-Ha; Sun, Coral; Kain, Zeev N

    2016-04-01

    As part of ongoing perioperative surgical home implantation process, we applied a previously published algorithm for creation of a maximum surgical blood order schedule (MSBOS) to our operating rooms. We hypothesized that using the MSBOS we could show a reduction in unnecessary preoperative blood testing and associated costs. Data regarding all surgical cases done at UC Irvine Health's operating rooms from January 1, 2011, to January 1, 2014 were extracted from the anesthesia information management systems (AIMS). After the data were organized into surgical specialties and operative sites, blood order recommendations were generated based on five specific case characteristics of the group. Next, we assessed current ordering practices in comparison to actual blood utilization to identify potential areas of wastage and performed a cost analysis comparing the annual hospital costs from preoperative blood orders if the blood order schedule were to be followed to historical practices. Of the 19,138 patients who were categorized by the MSBOS as needing no blood sample, 2694 (14.0%) had a type and screen (T/S) ordered and 1116 (5.8%) had a type and crossmatch ordered. Of the 6073 procedures where MSBOS recommended only a T/S, 2355 (38.8%) had blood crossmatched. The cost analysis demonstrated an annual reduction in actual hospital costs of $57,335 with the MSBOS compared to historical blood ordering practices. We showed that the algorithm for development of a multispecialty blood order schedule is transferable and yielded reductions in preoperative blood product screening at our institution. © 2016 AABB.

  17. Attending to pitch information inhibits processing of pitch information: the curious case of amusia.

    Science.gov (United States)

    Zendel, Benjamin Rich; Lagrois, Marie-Élaine; Robitaille, Nicolas; Peretz, Isabelle

    2015-03-04

    In normal listeners, the tonal rules of music guide musical expectancy. In a minority of individuals, known as amusics, the processing of tonality is disordered, which results in severe musical deficits. It has been shown that the tonal rules of music are neurally encoded, but not consciously available in amusics. Previous neurophysiological studies have not explicitly controlled the level of attention in tasks where participants ignored the tonal structure of the stimuli. Here, we test whether access to tonal knowledge can be demonstrated in congenital amusia when attention is controlled. Electric brain responses were recorded while asking participants to detect an individually adjusted near-threshold click in a melody. In half the melodies, a note was inserted that violated the tonal rules of music. In a second task, participants were presented with the same melodies but were required to detect the tonal deviation. Both tasks required sustained attention, thus conscious access to the rules of tonality was manipulated. In the click-detection task, the pitch deviants evoked an early right anterior negativity (ERAN) in both groups. In the pitch-detection task, the pitch deviants evoked an ERAN and P600 in controls but not in amusics. These results indicate that pitch regularities are represented in the cortex of amusics, but are not consciously available. Moreover, performing a pitch-judgment task eliminated the ERAN in amusics, suggesting that attending to pitch information interferes with perception of pitch. We propose that an impaired top-down frontotemporal projection is responsible for this disorder. Copyright © 2015 the authors 0270-6474/15/353815-10$15.00/0.

  18. E-decisions - mobile information system to support the decision process

    OpenAIRE

    Hristov, Risto; Temjanovski, Riste; Gorgev, Jelena

    2014-01-01

    The construction of an electronic information system means the process of building the information system within the enterprise. This process differs from company to company, because before each company sets specific requirements. However, the stages that make up this process are the same for all companies, but the processes within each stage are different. Following the decision, the next step is the Foundation building electronic information system. Development planning means to set goals, ...

  19. Processing of Sensory Information in the Olfactory System

    DEFF Research Database (Denmark)

    The olfactory system is an attractive model system due to the easy control of sensory input and the experimental accessibility in animal studies. The odorant signals are processed from receptor neurons to a neural network of mitral and granular cells while various types of nonlinear behaviour can...... and equation-free techniques allow for a better reproduction and understanding of recent experimental findings. Talks: Olfaction as a Model System for Sensory-Processing Neural Networks (Jens Midtgaard, University of Copenhagen, Denmark) Nonlinear Effects of Signal Transduction in Olfactory Sensory Neurons...

  20. Textual and chemical information processing: different domains but similar algorithms

    Directory of Open Access Journals (Sweden)

    Peter Willett

    2000-01-01

    Full Text Available This paper discusses the extent to which algorithms developed for the processing of textual databases are also applicable to the processing of chemical structure databases, and vice versa. Applications discussed include: an algorithm for distribution sorting that has been applied to the design of screening systems for rapid chemical substructure searching; the use of measures of inter-molecular structural similarity for the analysis of hypertext graphs; a genetic algorithm for calculating term weights for relevance feedback searching for determining whether a molecule is likely to exhibit biological activity; and the use of data fusion to combine the results of different chemical similarity searches.