physicists , and mathematicians . However, more and more biologists and psychologists are starting to use advanced signal processing techniques and...Book: Marine Bioacoustic Signal Processing and Analysis 5a. CONTRACT NUMBER 5b. GRANT NUMBER 5c. PROGRAM ELEMENT NUMBER 6. AUTHOR(S) 5d. PROJECT ...chapters than it should be, since the project must be finished by Dec. 31. I have started setting aside 2 hours of uninterrupted per workday to work
Full Text Available Using Hidden Markov Models (HMMs as a recognition framework for automatic classification of animal vocalizations has a number of benefits, including the ability to handle duration variability through nonlinear time alignment, the ability to incorporate complex language or recognition constraints, and easy extendibility to continuous recognition and detection domains. In this work, we apply HMMs to several different species and bioacoustic tasks using generalized spectral features that can be easily adjusted across species and HMM network topologies suited to each task. This experimental work includes a simple call type classification task using one HMM per vocalization for repertoire analysis of Asian elephants, a language-constrained song recognition task using syllable models as base units for ortolan bunting vocalizations, and a stress stimulus differentiation task in poultry vocalizations using a non-sequential model via a one-state HMM with Gaussian mixtures. Results show strong performance across all tasks and illustrate the flexibility of the HMM framework for a variety of species, vocalization types, and analysis tasks.
The field of Bioacoustics is an emerging field of science that investigates various aspects of animal audiology and communication. More recently, audiological means have been used to evaluate the cognitive abilities of animals using event related brain potentials (ERP's). The Mismatch Negativity (MMN) component of the ERP is considered a cognitive neuroelectric phenomenon since it is generated in the area of the cortex that is responsible for evaluating sound stimuli including the ability to discriminate. Such discrimination produces a negative-going waveform with a relative latency of about 150-250 msec when elicited with auditory stimuli in human adults. The MMN response is elicited by use of the oddball paradigm in which two different tones are presented in pseudo-random order. The purpose of this study was to determine if elicitation of the MMN is achievable in the horse by use of current equipment in a non-clinical setting such as a barn. During the course of this experiment, it became obvious that the major challenge was the excessive amount of noise that inundated the waveforms thereby making any specific waves even remotely discernible. Attempts were made to improve the signal-to-noise ratio (SNR) by modifications to the testing unit and the addition of several in-line and digital filters. However, even with these modifications, the MMN response still could not be identifiable within the noise of the waveforms. Therefore, the matter of whether or not the horse elicits a MMN response should be revised to if it is even feasible to elicit a MMN response in these animals.
Oliver, R.; Ellis, D.; Gough, L.; Chmura, H.; Sweet, S. K.; Boelman, N.; Krause, J.; Perez, J.; Wingfield, J.
Climate change is altering the seasonality of environmental conditions and the phenology of vegetation, particularly at high northern latitudes. Yet changes in the phenology of wildlife that rely on northern ecosystems is significantly understudied. In much the same way that remote sensing enables global-scale observations of climate and vegetation, ground-based bioacoustic recording networks have the potential to vastly expand the spatial and temporal coverage of wildlife monitoring. However, the enormous datasets that autonomous recorders typically generate demand automated analyses that remain largely undeveloped. To unleash the potential for global-scale bioacoustic monitoring, we developed automated signal processing and machine learning algorithms to generate seasonal times series of breeding songbird vocal activity from 1200 hours of landscape-level recordings in northern Alaska. The calendar dates on which songbird communities arrived to their breeding grounds in five springs (2010-2014) were automatically extracted from the time series, and agreed within 3 days to those determined via traditional avian surveys (RMSE = 1.88 - 3.02). Relative to other years, our bioacoustic approach identified a 1-9 day delay in the arrival of long distance migratory songbird communities to their breeding grounds in 2013 - a spring characterized by persistent snow cover and cold temperatures. Differences in arrival timing among sites were strongly related to the date on which the landscape surrounding the microphone became snow-free, particularly in the supervised approach (supervised: R2 = 0.59, p autonomously, which would provide the coverage necessary to determine and project the influence of climate on rapidly changing ecosystems.
Vences, M.; Glaw, F.; Köhler, J.; Wollenberg, K.C.
We provide a partial revision of the microhylid frogs of the genus Anodonthyla, endemic to Madagascar, based on comprehensive molecular, bioacoustic and morphological data sets that include newly collected specimens from multiple localities. The molecular trees provide strong evidence for the
Edwards, Sharry K.
Over the past 20+ years the pioneering field of Human Bioacoustics, which includes voice spectral analysis, has begun to model the frequencies and architecture of human vocalizations to identify the innate mathematical templates found within the various system of the human body. Using the idea that the voice is a holographic representation of health and wellness, these non-invasive techniques are being advanced to the extent that a computerized Vocal Profile, using a system of Frequency Equivalents, can be used to accurately quantify, organize, interpret, define, and extrapolate biometric information from the human voice. This information, in turn, provides the opportunity to predict, direct, and maintain intrinsic form and function. This novel approach has provided an accumulation of significant data but until recently has been without an efficient biological framework of reference. The emerging Mathematical Model being assembled through Human Bioacoustic research likely has the potential to allow Vocal Profiling to be used to predict and monitor health issues from the very first cries of a newborn through the frequency foundations of disease and aging.
Hastings, Mardi C.; Au, Whitlow W. L.
Marine animals use sound for communication, navigation, predator avoidance, and prey detection. Thus the rise in acoustic energy associated with increasing human activity in the ocean has potential to impact the lives of marine animals. Thirty years ago marine bioacoustics primarily focused on evaluating effects of human-generated sound on hearing and behavior by testing captive animals and visually observing wild animals. Since that time rapidly changing electronic and computing technologies have yielded three tools that revolutionized how bioacousticians study marine animals. These tools are (1) portable systems for measuring electrophysiological auditory evoked potentials, (2) miniaturized tags equipped with positioning sensors and acoustic recording devices for continuous short-term acoustical observation rather than intermittent visual observation, and (3) passive acoustic monitoring (PAM) systems for remote long-term acoustic observations at specific locations. The beauty of these breakthroughs is their direct applicability to wild animals in natural habitats rather than only to animals held in captivity. Hearing capabilities of many wild species including polar bears, beaked whales, and reef fishes have now been assessed by measuring their auditory evoked potentials. Miniaturized acoustic tags temporarily attached to an animal to record its movements and acoustic environment have revealed the acoustic foraging behavior of sperm and beaked whales. Now tags are being adapted to fishes in effort to understand their behavior in the presence of noise. Moving and static PAM systems automatically detect and characterize biological and physical features of an ocean area without adding any acoustic energy to the environment. PAM is becoming a powerful technique for understanding and managing marine habitats. This paper will review the influence of these transformative tools on the knowledge base of marine bioacoustics and elucidation of relationships between marine
Laurijssen, Dennis; Verreycken, Erik; Geipel, Inga; Daems, Walter; Peremans, Herbert; Steckel, Jan
In this paper, we present a method for synchronizing high-speed audio and video recordings of bio-acoustic experiments. By embedding a random signal into the recorded video and audio data, robust synchronization of a diverse set of sensor streams can be performed without the need to keep detailed records. The synchronization can be performed using recording devices without dedicated synchronization inputs. We demonstrate the efficacy of the approach in two sets of experiments: behavioral experiments on different species of echolocating bats and the recordings of field crickets. We present the general operating principle of the synchronization method, discuss its synchronization strength and provide insights into how to construct such a device using off-the-shelf components. © 2018. Published by The Company of Biologists Ltd.
Bucklin, Ann; Wiebe, Peter H.; Smolenack, Sara B.; Copley, Nancy J.; Clarke, M. Elizabeth
Integrated assessment of the euphausiid Nematoscelis difficilis (Crustacea; Euphausiacea) and the zooplankton assemblage of the California Current was designed to investigate individual, population, and community responses to mesoscale variability in biological and physical characters of the ocean. Zooplankton samples and observational data were collected along a cross-shelf transect of the California Current in association with the California Cooperative Fisheries Investigations (CalCOFI) Survey during October 1996. The transect crossed three domains defined by temperature and salinity: nearshore, mid-Current, and offshore. Individual N. difficilis differed in physiological condition along the transect, with higher size-corrected concentrations of four central metabolic enzymes (citrate synthetase, hexokinase, lactate dehydrogenase (LDH), and phosphoglucose isomerase (PGI)) for euphausiids collected in nearshore waters than in mid-Current and offshore waters. There was little variation in the DNA sequences of the genes encoding PGI and LDH (all DNA changes were either silent or heterozygous base substitutions), suggesting that differences in enzyme concentration did not result from underlying molecular genetic variation. The population genetic makeup of N. difficilis varied from sample to sample based on haplotype frequencies of mitochondrial cytochrome oxidase I (mtCOI; P=0.029). There were significant differences between pooled nearshore and offshore samples, based on allele frequencies at two sites of common substitutions in the mtCOI sequence ( P=0.020 and 0.026). Silhouette and bioacoustical backscattering measurements of the zooplankton assemblage of the top 100 m showed marked diel vertical migration of the scattering layer, of which euphausiids were a small but significant fraction. The biochemical and molecular assays are used as indices of complex physiological (i.e., growth and condition) and genetic (i.e., mortality) processes; the bioacoustical
Full Text Available Recent bioacoustic investigations have shown that Cicadetta montana Scopoli 1772 is a complex of morphologically similar sister species that are best characterized by their song patterns. At the type locality of C. montana, only mountain cicadas with simple, long lasting song phrases were heard, recorded and collected. Therefore, we have good reasons to suggest that this type of song is characteristic for C. montana s. str. Boulard described a song of C. montana from France with phrases composed of a long and a short echeme; this type of song is characteristic for cicadas morphologically corresponding to C. montana var. brevipennis Fieber 1876; we suggest to raise this taxon to species level. On the basis of specific song, Puissant and Boulard described C. cerdaniensis from Pyrénées. A similar case was the discovery and description of C. montana macedonica Schedl 1999 from Macedonia; since these Macedonian cicadas are sympatric with at least two other cryptic species in the C. montana group and molecular investigations showed substantial genetic differences between C. macedonica and C. montana or C. brevipennis, we conclude that this taxon should also be raised to species level. Songs of closely related C. podolica and Korean mountain cicada are presented as well.Pesquisas recentes de bioacústica mostraram que Cicadetta montana Scopoli 1772 é um complexo de espécie-irmãs morfologicamente semelhantes e melhor caracterizadas por seus padrões de canto. Na localidade-tipo de C. montana somente cigarras serranas de longas frases de canto foram ouvidas, gravadas e coletadas. Portanto, temos boas razões para propor este tipo de canto como característico de C. montana s. str. Boulard descreveu um canto de C. montana da França com frases compostas de uma estridulação longa e uma curta; este tipo de canto é característico das cigarras correspondendo morfologicamente a C. montana var. brevipennis Fieber 1876; sugerimos elevar este táxon ao n
Spence, Heather Ruth
most biologically and physically distinct from the ocean habitat also differed greatly from the other sites acoustically, with the most common and high amplitude sound being pump noise versus biological sounds at the other sites. Overall the dolphin facilities were neither clearly noisier nor more sterile than the wild site, but rather differed in particular characteristics. The findings are encouraging for dolphin welfare for several reasons. Sound levels measured were unlikely to cause threshold shifts in hearing. At three of four facilities, prominent biological sounds in the wild site -- snapping shrimp and fish sounds -- were present, meaning that the dolphins at these facilities are experiencing biotic features of the soundscape they would experience in the wild. Additionally, the main anthropogenic sounds experienced at the facilities (construction and cleaning sounds) did not reach the levels of the anthropogenic sounds experienced at the wild site (boat motor sounds), and the highest noise levels for anthropogenic sounds fall outside the dolphins' most sensitive range of hearing. However, there are anthropogenic contributors to the soundscape that are of particular interest and possible concern that should be investigated further, particularly pump noise and periodic or intermittent construction noise. These factors need to be considered on a facility-by-facility basis and appropriate mitigation procedures incorporated in animal handling to mitigate potential responses to planned or anticipated sound producing events, e.g. animal relocation or buffering sound producing activities. The central role of bioacoustics for dolphins means that PAM is a basic life support requirement along with water and food testing. Periodic noise is of highest concern, and PAM is needed to inform mitigation of noise from periodic sources. Priority actions are more widespread and long-term standardized monitoring, further research on habituation, preference, coupling and pool
Bowles, Ann E.
Animal bioacoustics (AB) is the study of sound in nonhuman animal biology. I entered the field because I was interested in the evolution of language, and I wanted to study the acoustic communication of whales and dolphins. Topics like this within the scope of AB make the discipline accessible to students and laypeople. Although career opportunities are limited (professionals declaring AB as their primary area represent only 3% of ASA membership [http://www.acoustics.org/WIA, statistics for 2000]), an interest in AB can foster entry into more marketable disciplines. It has been a particularly important avenue for bringing women into careers in traditionally male-dominated subject areas. For example, women represent 14% of the ASA membership and 12% or fewer of those declaring Underwater Acoustics, Engineering Acoustics, and Noise as their primary interest. However, 25% of those declaring AB as their primary interest are women, and AB includes all three topic areas within its scope. Unfortunately, AB is still fairly inaccessible to interested lay professionals such as educators, science writers, and environmental planners. By helping them to develop a deeper understanding of topics in AB, ASA can help them foster careers in acoustics.
Lucas Rodriguez Forti
Full Text Available Background Anuran vocalizations, such as advertisement and release calls, are informative for taxonomy because species recognition can be based on those signals. Thus, a proper acoustic description of the calls may support taxonomic decisions and may contribute to knowledge about amphibian phylogeny. Methods Here we present a perspective on advertisement call descriptions of the frog subfamily Lophyohylinae, through a literature review and a spatial analysis presenting bioacoustic coldspots (sites with high diversity of species lacking advertisement call descriptions for this taxonomic group. Additionally, we describe the advertisement and release calls of the still poorly known treefrog, Itapotihyla langsdorffii. We analyzed recordings of six males using the software Raven Pro 1.4 and calculated the coefficient of variation for classifying static and dynamic acoustic properties. Results and Discussion We found that more than half of the species within the subfamily do not have their vocalizations described yet. Most of these species are distributed in the western and northern Amazon, where recording sampling effort should be strengthened in order to fill these gaps. The advertisement call of I. langsdorffii is composed of 3–18 short unpulsed notes (mean of 13 ms long, presents harmonic structure, and has a peak dominant frequency of about 1.4 kHz. This call usually presents amplitude modulation, with decreasing intensity along the sequence of notes. The release call is a simple unpulsed note with an average duration of 9 ms, and peak dominant frequency around 1.8 kHz. Temporal properties presented higher variations than spectral properties at both intra- and inter-individual levels. However, only peak dominant frequency was static at intra-individual level. High variability in temporal properties and lower variations related to spectral ones is usual for anurans; The first set of variables is determined by social environment or temperature
Paula Catalina Caycedo-Rosales
Full Text Available During the past decade, numerous research studies and applications on automated bioacoustic monitoring have been published; however, such studies are scattered in the literature of engineering and life sciences. This paper presents a review on fundamental concepts of automated acoustic monitoring. Our aim is to compare and categorize —in a taxonomy of techniques DSP/PR— the contributions of published research studies and applications; in order to suggest some directions for future research and highlight challenges and opportunities related to the deployment of this technology in Colombia.Durante la última década se ha publicado una gran cantidad de estudios de investigación y aplicaciones sobre monitoreo bioacústico automatizado. No obstante, tales estudios están dispersos en la literatura de ingeniería y ciencias biológicas. En este artículo se presentan conceptos fundamentales sobre monitoreo bioacústico automatizado; se revisan, comparan y categorizan —en una taxonomía de técnicas de DSP/PR— las contribuciones de las investigaciones y las aplicaciones publicadas; se sugieren algunas direcciones para investigaciones futuras y se resaltan los retos y las oportunidades relacionados con la instalación de esta tecnología en Colombia.
estimated to miss 38% of sperm whales that are on a ship’s trackline ( Barlow and Rankin 2004), and more at greater distances from the trackline. Other...scanning (J. Barlow , pers. comm). Acoustic methods, in contrast to visual ones, function well in darkness, fog, high sea states, and other inclement
software for data acquisition and display. An interesting and hopefully promising partnership has been recently established with the University of Pisa to...participation was partially funded by NURC. Flight time during the whale-watching campaign in the Ligurian Sea was funded by Coop. Battellieri and WWF - Liguria
of the cat’s WINER. 1. A. Anatomy of layer IV in cat primary auditory cortex t4,1). J miedial geniculate body Ideintified by projections to binaural...34language" (see for example Tartter, 1986, chapter 8; and Lieberman, 1984). Attempts have been made to train animals (mainly apes, gorillas , _ _ ___I 3...gestures of a gorilla : Language acquisition in another Pongid. Brain and Language, 1978a, 5, 72-97. Patterson, F. Conversations with a gorilla
Valetti, Julián Alonso; Salas, Nancy Edith; Martino, Adolfo Ludovico
The advertisement call plays an important role in the life history of anuran amphibians, mainly during the breeding season. Call features represent an important character to discriminate species, and sound emissions are very effective to assure or reinforce genetic incompatibility, especially in the case of sibling species. Since frogs are ectotherms, acoustic properties of their calls will vary with temperature. In this study, we described the advertisement call of C. cranwelli, quantifying the temperature effect on its components. The acoustic emissions were recorded during 2007 using a DAT record Sony TCD-100 with stereo microphone ECM-MS907 Sony and tape TDK DAT-RGX 60. As males emit their calls floating in temporary ponds, water temperatures were registered after recording the advertisement calls with a digital thermometer TES 1300+/-0.1 degreeC. Altogether, 54 calls from 18 males were analyzed. The temporal variables of each advertisement call were measured using oscillograms and sonograms and the analyses of dominant frequency were performed using a spectrogram. Multiple correlation analysis was used to identify the temperature-dependent acoustic variables and the temperature effect on these variables was quantified using linear regression models. The advertisement call of C. cranwelli consists of a single pulse group. Call duration, Pulse duration and Pulse interval decreased with the temperature, whereas the Pulse rate increased with temperature. The temperature-dependent variables were standardized at 25 degreeC according to the linear regression model obtained. The acoustic variables that were correlated with the temperature are the variables which emissions depend on laryngeal muscles and the temperature constraints the contractile properties of muscles. Our results indicated that temperature explains an important fraction of the variability in some acoustic variables (79% in the Pulse rate), and demonstrated the importance of considering the effect of temperature in acoustic components. The results suggest that acoustic variables show geographic variation to compare data with previous works.
T. Mitchell Aide
Full Text Available Traditionally, animal species diversity and abundance is assessed using a variety of methods that are generally costly, limited in space and time, and most importantly, they rarely include a permanent record. Given the urgency of climate change and the loss of habitat, it is vital that we use new technologies to improve and expand global biodiversity monitoring to thousands of sites around the world. In this article, we describe the acoustical component of the Automated Remote Biodiversity Monitoring Network (ARBIMON, a novel combination of hardware and software for automating data acquisition, data management, and species identification based on audio recordings. The major components of the cyberinfrastructure include: a solar powered remote monitoring station that sends 1-min recordings every 10 min to a base station, which relays the recordings in real-time to the project server, where the recordings are processed and uploaded to the project website (arbimon.net. Along with a module for viewing, listening, and annotating recordings, the website includes a species identification interface to help users create machine learning algorithms to automate species identification. To demonstrate the system we present data on the vocal activity patterns of birds, frogs, insects, and mammals from Puerto Rico and Costa Rica.
Full Text Available The presence of bees is typically accompanied by the humming sound of their flight. Bees of several tribes are also capable of pollen collecting by vibration, known as buzzing behaviour, which produces a buzzing sound, different from the flight sound. An open question is whether bee species have species-specific buzzing patterns or frequencies dependent of the bees' morphology or are capable to adjust their indivudual buzzing sound to optimize pollen return. The investigations to approach this issue were performed in northeastern Brazil near Recife in the state of Pernambuco. We present a new field method using a commercially available portable system able to record the sound of bees during flight and buzzing at flowers. Further, we describe computer linguistical algorithms to analyse the frequency of the recorded sound sequences. With this method, we recorded the flight and buzzing sequences of 59 individual bees out of 12 species visiting the flowers of Solanum stramoniifolium and S. paniculatum. Our findings demonstrate a typical frequency range for the sounds produced by the bees of a species. Our statistical analysis shows a strong correlation of bee size and flight frequency and demonstrate that bee species use different frequency patterns.
given initial velocity which starts the tissue " blobs " in opposing directions so that they collide and thereby produce an acoustic pressure wave. The...Atlantic bottlenose dolphin (Tursiops truncatus) in open waters. In: R. G. BUSNEL AND J. F. FISH (eds.). Animal Sonar Systems, pp. 251-282. Plenum
Acanthoscelides obtectus (Say) (Coleoptera: Chrysomelidae), is an economically important pest of common bean Phaseolus vulgaris L. (Fabaceae) in the tropics and subtropics. It is difficult to detect the presence of A. obtectus because the larvae are cryptic and spend most of their developmental time...
depth, and compass data sets have been intergrated into trackPlot software allowing for 3-D visualization of the tagged animal while underwater. An...OLESON, E. M., J. CALAMBOKIDIS, W. C. BURGESS, M. A. MCDONALD, C. A. LEDUC and J. A. HILDEBRAND. 2007a. Behavioral context of call production by
accepted from six different countries (USA & Puerto Rico, Italy, United Kingdom, Greece, Canada, and Austria). Advertising for SeaBASS was published...there was so much good and varied information in all the lectures, I would have to give it to Paul for his storytelling . • Paul Nachtigall’s lecture
Full Text Available Water frog mating calls from two localities were studied and analyzed. Recordings were made in the summer of 2010 at the Arkutino swamp near the town of Primorsko and at the Vurbitza River near the town of Momchilgrad. A total of 154 calls were analyzed and the results suggested the presence of both the Marsh frog (Pelophylax ridibundus and the Levant frog (Pelophylax bedriagae in both sites, with the former being more frequent in Vurbitza River, and the latter – in Arkutino. At Vurbitza, we also captured and measured 2 specimens, which morphological characteristics differed from P. ridibundus and matched those of P. bedriagae. These are the first localities for P. bedriagae in Bulgaria.
Full Text Available Whistled languages are a valuable heritage of human culture. This paper gives a first survey about a new multidisciplinary approach to these languages. Previous studies on whistled equivalents of languages have already documented that they can provide significant information about the role of rhythm and melody in language. To substantiate this, most whistles are represented by modulations of frequency, centered around 2000 Hz (±1000 Hz and often reach a loudness of about 130 dB (measured at 1m from the source. Their transmission range can reach up to 10 km (as verified in La Gomera, Canary Island, and the messages can remain understandable, even if the signal is deteriorated. In some cultures the use of whistled language is associated with some "talking musical instruments" (e.g. flutes, guitars, harps, gongs, drums, khens. Finally, whistles as a means of conveying information have some analogues in the animal kingdom (e.g. some birds, cetaceans, primates, providing opportunities to compare the acoustic characteristics of the respective signals. With such properties as a reference, the project reported here has two major tasks: to further elucidate the many facets of whistled language and, above all, help to immediately stop the process of its gradual disappearance.
APPENDIX A. ACRONYMS ACCES Attenuating Custom Communication Earpiece System ACEIT Automated Cost estimating Integrated Tools AFSC Air Force...documented in the ACEIT cost estimating tool developed by Tecolote, Inc. The factor used was 14 percent of PMP. 1.3 System Engineering/ Program...The data source is the ASC Aeronautical Engineering Products Cost Factor Handbook which is documented in the ACEIT cost estimating tool developed
... of pinnipeds while developing and carrying out complementary independent investigations. During the award period, both students received specialized training in animal psychophysics, experimental design, and acoustic instrumentation and measurement...
binaural processing have been neglected. From a signal-processing standpoint, we should avoid complex computational methods and instead use massively...design and/or build transducers or arrays with anywhere near the performance and, most importantly, environmental adaptability of animal binaural ...shell Small animal imaging Cardiac Imaging in Mice The Challenge Mouse heart • 7mm diameter • 8 beats /sec Mouse Heart L16-28MHzL5-10MHz Laptop
Rodríguez, Ariel; Dugo-Cota, Álvaro; Montero-Mendieta, Santiago; Gonzalez-Voyer, Alejandro; Bosch, Roberto Alonso; Vences, Miguel; Vilà, Carles
We studied the variation in genetics, bioacustics, and morphology in Eleutherodactylus glamyrus, a regionally endemic frog species restricted to high elevations in the Sierra Maestra Massif, Western Cuba that was originally described as a cryptic species hidden under the name E. auriculatus. Genetic analysis of mtDNA sequences of the 16S and cob genes identify two allopatric and strongly supported mitochondrial clades (phylogroups) which also showed no haplotype sharing in the nuclear Rag-1 gene. Bioacustic, and morphological comparisons concordantly identify these two phylogroups as independent evolutionary lineages. Therefore, we herein restrict the name Eleutherodactylus glamyrus Estrada and Hedges to populations represented in our analyses as the western phylogroup (Cordillera del Turquino to Pico La Bayamesa) and consider specimens from the eastern phylogroup (Sierra del Cobre) to represent a new species described and named as Eleutherodactylus cattus. Our results add to the growing list of Eleutherodactylus species endemic to Cuba and highlight the importance of combining different sources of evidence for obtaining robust assessments of species limits in amphibians.
Julián Alonso Valetti
Full Text Available El canto de advertencia en anuros es especie-específico, pero como los anfibios son organismos ectotermos, las variables acústicas pueden estar afectadas por la temperatura. Se describe el canto de advertencia de Ceratophrys cranwelli cuantificando el efecto de la temperatura sobre sus componentes. Los cantos se grabaron in situ y se registró la temperatura del sitio de canto. Un total de 54 cantos de 18 individuos fueron digitalizados y analizados. Las variables temporales de cada canto de advertencia fueron medidas a partir de los oscilogramas y sonogramas, mientras que el análisis de frecuencia se realizó a través del espectrograma. Mediante análisis de correlación múltiple se identificaron las variables acústicas temperatura-dependientes y el efecto de la temperatura fue cuantificado mediante los modelos de regresión lineal obtenidos. C. cranwelli posee un canto de advertencia simple pulsado. Las variables Duración del canto, Duración del pulso e Intervalo entre pulso decrecen con la temperatura, en tanto que la Tasa de pulsos está directamente correlacionada con la temperatura. Las variables temperatura-dependientes fueron estandarizadas a 25ºC según el modelo de regresión lineal obtenido para ser comparadas con datos publicados. Se demuestra la importante variabilidad que produce la temperatura en algunas propiedades del canto de C. cranwelli.The advertisement call plays an important role in the life history of anuran amphibians, mainly during the breeding season. Call features represent an important character to discriminate species, and sound emissions are very effective to assure or reinforce genetic incompatibility, especially in the case of sibling species. Since frogs are ectotherms, acoustic properties of their calls will vary with temperature. In this study, we described the advertisement call of C. cranwelli, quantifying the temperature effect on its components. The acoustic emissions were recorded during 2007 using a DAT record Sony™ TCD-100 with stereo microphone ECM-MS907 Sony™ and tape TDK™ DAT-RGX 60. As males emit their calls floating in temporary ponds, water temperatures were registered after recording the advertisement calls with a digital thermometer TES 1 300±0.1°C. Altogether, 54 calls from 18 males were analyzed. The temporal variables of each advertisement call were measured using oscillograms and sonograms and the analyses of dominant frequency were performed using a spectrogram. Multiple correlation analysis was used to identify the temperature-dependent acoustic variables and the temperature effect on these variables was quantified using linear regression models. The advertisement call of C. cranwelli consists of a single pulse group. Call duration, Pulse duration and Pulse interval decreased with the temperature, whereas the Pulse rate increased with temperature. The temperature-dependent variables were standardized at 25°C according to the linear regression model obtained. The acoustic variables that were correlated with the temperature are the variables which emissions depend on laryngeal muscles and the temperature constraints the contractile properties of muscles. Our results indicated that temperature explains an important fraction of the variability in some acoustic variables (79% in the Pulse rate, and demonstrated the importance of considering the effect of temperature in acoustic components. The results suggest that acoustic variables show geographic variation to compare data with previous works.
Full Text Available Despite being a charismatic and well-known species, the social system of the koala (Phascolarctos cinereus--the only extant member of the family Phascolarctidae is poorly known and much of the koala's sociality and mating behaviors remain un-quantified. We evaluated these using proximity logging-GPS enabled tracking collars on wild koalas and discuss their implications for the mating system of this species. The frequency and duration of male-female encounters increased during the breeding season, with male-male encounters quite uncommon, suggesting little direct mating competition. By comparison, female-female interactions were very common across both seasons. Body mass of males was not correlated with their interactions with females during the breeding season, although male size is associated with a variety of acoustic parameters indicating individuality. We hypothesise that vocal advertising reduces the likelihood of male-male encounters in the breeding season while increasing the rate of male-female encounters. We suggest that male mating-season bellows function to reduce physical confrontations with other males allowing them to space themselves apart, while, at the same time, attracting females. We conclude that indirect male-male competition, female mate choice, and possibly female competition, mediate sexual selection in koalas.
Whipple, Bill; Barth, Ben; Johnston, Stephen; Seddon, Jenny; Melzer, Alistair; Higgins, Damien
Despite being a charismatic and well-known species, the social system of the koala (Phascolarctos cinereus—the only extant member of the family Phascolarctidae) is poorly known and much of the koala’s sociality and mating behaviors remain un-quantified. We evaluated these using proximity logging-GPS enabled tracking collars on wild koalas and discuss their implications for the mating system of this species. The frequency and duration of male-female encounters increased during the breeding season, with male-male encounters quite uncommon, suggesting little direct mating competition. By comparison, female-female interactions were very common across both seasons. Body mass of males was not correlated with their interactions with females during the breeding season, although male size is associated with a variety of acoustic parameters indicating individuality. We hypothesise that vocal advertising reduces the likelihood of male-male encounters in the breeding season while increasing the rate of male-female encounters. We suggest that male mating-season bellows function to reduce physical confrontations with other males allowing them to space themselves apart, while, at the same time, attracting females. We conclude that indirect male-male competition, female mate choice, and possibly female competition, mediate sexual selection in koalas. PMID:26154295
A new species of poison-dart frog (Anura: Dendrobatidae) from Manu province, Amazon region of southeastern Peru, with notes on its natural history, bioacoustics, phylogenetics, and recommended conservation status.
Serrano-Rojas, Shirley J; Whitworth, Andrew; Villacampa, Jaime; May, Rudolf VON; Gutiérrez, Roberto C; Padial, José M; Chaparro, Juan C
We describe and name a new species of poison-dart frog from the Amazonian slopes of the Andes in Manu Province, Madre de Dios Department, Peru; specifically within the Amarakaeri Communal Reserve and the buffer zone of Manu National Park. Ameerega shihuemoy sp. nov. is supported by a unique combination of characters: black dorsum with cream to light orange dorsolateral lines, blue belly reticulated with black, and the lack of axillary, thigh and calf flash marks. Within Ameerega, it shares the general appearance of A. altamazonica, A. boliviana, A. hahneli, A. ignipedis, A. petersi, A. picta, A. pongoensis, A. pulchripecta, A. simulans, A. smaragdina, and A. yungicola; each possessing a granular black to brown dorsum, a light labial bar, a conspicuous dorsolateral line running from the snout to the groin, and a metallic blue belly and underside of arms and hind limbs. From most of these species it can be distinguished by lacking flash marks on the axillae, thighs, and calves (absent in only A. boliviana and A. smaragdina, most A. petersi, and some A. pongoensis), by having bright cream to orange dorsolateral stripes (white, intense yellow, or green in all other species, with the exception of A. picta), and by its blue belly reticulated with black (bluish white and black in A. boliviana, green and blue with black marbling in A. petersi, and green and blue lacking black marbling in A. smaragdina). Its mating call also shows clear differences to morphologically similar species, with a lower note repetition rate, longer space between calls, and higher fundamental and dominant frequencies. Phylogenetic analyses based on the 16S mitochondrial rRNA fragment also support the distinctiveness of the new species and suggest that A. shihuemoy is most closely related to Ameerega macero, A. altamazonica, A. rubriventris, and two undescribed species (Ameerega sp. from Porto Walter, Acre, Brazil, and Ameerega sp. from Ivochote, Cusco, Peru). Genetically, the new species is most similar to the sympatric A. macero, from which it clearly differs in characteristics of its advertisement call and coloration. The new species is found near rocky streams during the dry season and near temporary water bodies during the rainy season. Tadpoles are found in lentic water along streams, or in shallow, slow-moving streams. Given its small geographic range, we recommend that A. shihuemoy should be considered 'Near threatened' (NT) according to IUCN Red List criteria.
Clark (2014), "Using High Performance Computing to Explore Large Complex Bioacoustic Soundscapes : Case Study for Right Whale Acoustics," Procedia...34Using High Performance Computing to Explore Large Complex Bioacoustic Soundscapes : Case Study for Right Whale Acoustics," Procedia Computer Science 20
National Oceanic and Atmospheric Administration, Department of Commerce — HUDSONAR is a bioacoustic survey of the Hudson River Estuary being conducted aboard the Hudson River Sloop Clearwater by the Acoustic Laboratory for Ecology Studies...
National Oceanic and Atmospheric Administration, Department of Commerce — HUDSONAR is a bioacoustic survey of the Hudson River Estuary being conducted aboard the Hudson River Sloop Clearwater by the Acoustic Laboratory for Ecology Studies...
National Oceanic and Atmospheric Administration, Department of Commerce — HUDSONAR is a bioacoustic survey of the Hudson River Estuary being conducted aboard the Hudson River Sloop Clearwater by the Acoustic Laboratory for Ecology Studies...
Samson, J.E.; Mooney, T.A.; Gussekloo, S.W.S.; Hanlon, R.T.
Sound is a widely available and vital cue in aquatic environments yet most bioacoustic research has focused on marine vertebrates, leaving sound detection in invertebrates poorly understood. Cephalopods are an ecologically key taxon that likely use sound and may be impacted by increasing
Chromosomal rearrangements occurred repeatedly and independently during species diversification in Malagasy geckos, genus Paroedura Abstract · Vol 38, No 1 (2003) - Articles Molecular and bioacoustic divergence in Mantidactylus granulatus and M. zavona n.sp. (Anura: Mantellidae): bearings for the biogeography of ...
Juan J. Noda
Full Text Available Bioacoustic research of reptile calls and vocalizations has been limited due to the general consideration that they are voiceless. However, several species of geckos, turtles, and crocodiles are abletoproducesimpleandevencomplexvocalizationswhicharespecies-speciﬁc.Thisworkpresents a novel approach for the automatic taxonomic identiﬁcation of reptiles through their bioacoustics by applying pattern recognition techniques. The sound signals are automatically segmented, extracting each call from the background noise. Then, their calls are parametrized using Linear and Mel Frequency Cepstral Coefﬁcients (LFCC and MFCC to serve as features in the classiﬁcation stage. In this study, 27 reptile species have been successfully identiﬁed using two machine learning algorithms: K-Nearest Neighbors (kNN and Support Vector Machine (SVM. Experimental results show an average classiﬁcation accuracy of 97.78% and 98.51%, respectively.
large animals . The large body size of mysticete whales precludes any meaningful bioacoustic work in captivity. Consequently, our assessment is...that the most effective way to study the vibroacoustic physiology of these animals is to construct a model of mysticete anatomy that can be used to...a postmortem gray whale specimen for this project, as originally planned. Alternatively, we acquired an entire carcass of a freshly postmortem
Land Use ANSI S3.23-1980. Committee on Hearing, Bioacoustics and Biomechanics . 1981. Assessment of Community Noise Response to High-Energy...entirely renovated since its original construction. In 1950, a covered platform, stair , and door were added to the northeast side of the building. Several...transformation into the housing office. A replacement for the rear entrance porch and stairs , with an awning, was completed in 1995; new windows and
Hill Hiroki Kobayashi
Full Text Available In this study, we present a vision of how a human–computer–biosphere interaction (HCBI can facilitate a sustainable society. HCBI extends and transforms the subject of human–computer interaction from countable people, objects, pets, and plants into an auditory biosphere that is an uncountable, a complex, and a non-linguistic soundscape. As an example, utilizing HCBI to experience forest soundscapes can help us feel one with nature, without physically being present in nature. The goal of HCBI is to achieve ecological interactions between humans and nature through computer systems without causing environmental destruction. To accomplish this, information connectivity must be created despite the physical separation between humans and the environment. This combination should also ensure ecological neutrality. In this paper, we present an overview of an HCBI concept, related work, methodologies, and developed interfaces. We used pre-recorded animal calls to enable a bio-acoustical feedback from the target wildlife. In this study, we primarily focus on the design and evaluation of a bio-acoustic interaction system utilizing tracking collars, microphones, speakers, infrared cameras, infrared heat sensors, micro-climate sensors, radio-tracking devices, GPS devices, radio clocks, embedded Linux boards, high-capacity batteries, and high-speed wireless communication devices. Our experiments successfully demonstrated bio-acoustic interactions between wildlife—more specifically, an endangered species of a wild cat—and human beings via a computer system, thus validating the HCBI concept.
Philippe J. R. Kok
Full Text Available A new species of Colostethus, long mistaken for Colostethus beebei, is described from French Guiana. The new species can be distinguished from congeners by absence of median lingual process, first finger longer than second, third finger not distinctly swollen in males, differences in tadpole morphology, coloration and pattern (e.g. absence of dorsolateral stripe, bioacoustics, and reproductive behavior. A complete redescription of Colostethus beebei plus description of its tadpole and call is provided on the basis of recently collected topotypic specimens. The range of C. beebei is restricted to the Kaieteur plateau, Pakaraima Mountains, Guyana.
Kloepper, Laura N; Kinniry, Morgan
Unmanned aerial vehicles (UAVs) are rising in popularity for wildlife monitoring, but direct recordings of animal vocalizations have not yet been accomplished, likely due to the noise generated by the UAV. Echolocating bats, especially Tadarida brasiliensis, are good candidates for UAV recording due to their high-speed, high-altitude flight. Here, we use a UAV to record the signals of bats during morning roost re-entry. We designed a UAV to block the noise of the propellers from the receiving microphone, and report on the characteristics of bioacoustic recordings from a UAV. We report the first published characteristics of echolocation signals from bats during group flight and cave re-entry. We found changes in inter-individual time-frequency shape, suggesting that bats may use differences in call design when sensing in complex groups. Furthermore, our first documented successful recordings of animals in their natural habitat demonstrate that UAVs can be important tools for bioacoustic monitoring, and we discuss the ethical considerations for such monitoring.
Full Text Available Coupled behavioural observations and acoustical recordings of aggressive dyadic contests showed that the mudskipper Periophthalmodon septemradiatus communicates acoustically while out of water. An analysis of intraspecific variability showed that specific acoustic components may act as tags for individual recognition, further supporting the sounds' communicative value. A correlative analysis amongst acoustical properties and video-acoustical recordings in slow-motion supported first hypotheses on the emission mechanism. Acoustic transmission through the wet exposed substrate was also discussed. These observations were used to support an "exaptation hypothesis", i.e. the maintenance of key adaptations during the first stages of water-to-land vertebrate eco-evolutionary transitions (based on eco-evolutionary and palaeontological considerations, through a comparative bioacoustic analysis of aquatic and semiterrestrial gobiid taxa. In fact, a remarkable similarity was found between mudskipper vocalisations and those emitted by gobioids and other soniferous benthonic fishes.
This book is a collection of papers presented at Acoustics and Vibration of Mechanical Structures 2017 – AVMS 2017 – highlighting the current trends and state-of-the-art developments in the field. It covers a broad range of topics, such as noise and vibration control, noise and vibration generation and propagation, the effects of noise and vibration, condition monitoring and vibration testing, modeling, prediction and simulation of noise and vibration, environmental and occupational noise and vibration, noise and vibration attenuators, as well as biomechanics and bioacoustics. The book also presents analytical, numerical and experimental techniques for evaluating linear and non-linear noise and vibration problems (including strong nonlinearity). It is primarily intended for academics, researchers and professionals, as well as PhD students in various fields of the acoustics and vibration of mechanical structures.
On 1 -2 December, the European Network ASPERA will be organising the “From the Geosphere to the Cosmos” workshop at the Palais de la Découverte in Paris. The LIDO platform, 3D-radiography projects for volcanoes, and CERN’s CLOUD experiment are among the interdisciplinary projects that will be presented at the workshop. Astroparticle physics is a new field mixing both particle physics and astrophysics. It offers many new opportunities for environmental disciplines such as oceanography, climate science and studies of the atmosphere, and geology. “From the Geosphere to the Cosmos” workshop will present them to the scientific community and the press. LIDO: Probing new territories Whales sing at the same wavelength as the neutrinos emitted by stars. This happy coincidence gave physicists the idea to share their undersea telescopes with marine biologists. By helping the development of a bioacoustics network to monitor the deep-sea envir...
Full Text Available Passive Acoustic Monitoring (PAM recently extended to a very wide range of animals, but no available open software has been sufficiently generic to automatically treat several taxonomic groups. Here we present Tadarida, a software toolbox allowing for the detection and labelling of recorded sound events, and to classify any new acoustic data into known classes. It is made up of three modules handling Detection, Labelling and Classification and running on either Linux or Windows. This development resulted in the first open software (1 allowing generic sound event detection (multi-taxa, (2 providing graphical sound labelling at a single-instance level and (3 covering the whole process from sound detection to classification. This generic and modular design opens numerous reuse opportunities among (bioacoustics researchers, especially for those managing and/or developing PAM schemes. The whole toolbox is openly developed in C++ (Detection and Labelling and R (Classification and stored at https://github.com/YvesBas.
K S Seshadri
Full Text Available In recent times, several new species of amphibians have been described from India. Many of these discoveries are from biodiversity hotspots or from within protected areas. We undertook amphibian surveys in human dominated landscapes outside of protected areas in south western region of India between years 2013-2015. We encountered a new species of Microhyla which is described here as Microhyla laterite sp. nov. It was delimited using molecular, morphometric and bioacoustics comparisons. Microhyla laterite sp. nov. appears to be restricted to areas of the West coast of India dominated by laterite rock formations. The laterite rock formations date as far back as the Cretaceous-Tertiary boundary and are considered to be wastelands in-spite of their intriguing geological history. We identify knowledge gaps in our understanding of the genus Microhyla from the Indian subcontinent and suggest ways to bridge them.
A useful model group to examine reproductive plasticity in acoustic responsiveness is the family Gobiidae. Male round gobies Neogobius melanostomus emit calls and females respond to these calls with high specificity. The current study investigates differential attraction between reproductive morphologies of the goby to conspecific calls and explores the use of calls to develop a bioacoustic trap. Behavioural responsiveness to conspecific calls was tested using playback experiments in the lab and field. Females showed a strong attraction to the grunt call in both the lab and field, while nonreproductive and sneaker males preferred the drum call in the lab, but favoured the grunt call in the field. By determining the relationship between reproductive state and auditory responsiveness to conspecific calls, I am further elucidating the function of acoustic communication in the round goby and may be essential when creating control strategies to prevent the spread of the invasive species.
As scientists carefully study some aspects of the ocean environment, are they unintentionally distressing others? That is a question to be answered by Robert Benson and his colleagues in the Center for Bioacoustics at Texas A&M University.With help from a 3-year, $316,000 grant from the U.S. Office of Naval Research, Benson will study how underwater noise produced by naval operations and other sources may affect marine mammals. In Benson's study, researchers will generate random sequences of low-frequency, high-intensity (180-decibel) sounds in the Gulf of Mexico, working at an approximate distance of 1 km from sperm whale herds. Using an array of hydrophones, the scientists will listen to the characteristic clicks and whistles of the sperm whales to detect changes in the animals' direction, speed, and depth, as derived from fluctuations in their calls.
Bocast, Christopher S.
A portfolio dissertation that began as acoustic ecology and matured into perceptual ecology, centered on ecomusicology, bioacoustics, and translational audio-based media works with environmental perspectives. The place of music in Western eco-cosmology through time provides a basis for structuring an environmental history of human sound perception. That history suggests that music may stabilize human mental activity, and that an increased musical practice may be essential for the human project. An overview of recent antecedents preceding the emergence of acoustic ecology reveals structural foundations from 20th century culture that underpin modern sound studies. The contextual role that Aldo Leopold, Jacob von Uexkull, John Cage, Marshall McLuhan, and others played in anticipating the development of acoustic ecology as an interdiscipline is detailed. This interdisciplinary aspect of acoustic ecology is defined and defended, while new developments like soundscape ecology are addressed, though ultimately sound studies will need to embrace a broader concept of full-spectrum "sensory" or "perceptual" ecology. The bioacoustic fieldwork done on spawning sturgeon emphasized this necessity. That study yielded scientific recordings and spectrographic analyses of spawning sounds produced by lake sturgeon, Acipenser fulvescens, during reproduction in natural habitats in the Lake Winnebago watershed in Wisconsin. Recordings were made on the Wolf and Embarrass River during the 2011-2013 spawning seasons. Several specimens were dissected to investigate possible sound production mechanisms; no sonic musculature was found. Drumming sounds, ranging from 5 to 7 Hz fundamental frequency, verified the infrasonic nature of previously undocumented "sturgeon thunder". Other characteristic noises of sturgeon spawning including low-frequency rumbles and hydrodynamic sounds were identified. Intriguingly, high-frequency signals resembling electric organ discharges were discovered. These
C. Daniel Rivadeneira
Full Text Available The genus Dendropsophus is one of the most speciose among Neotropical anurans and its number of described species is increasing. Herein, molecular, morphological, and bioacoustic evidence are combined to assess species limits within D. parviceps, a widely distributed species in the Amazon Basin. Phylogenetic relationships were assessed using 3040 bp sequences of mitochondrial DNA, genes 12S, ND1, and CO1. The phylogeny shows three well-supported clades. Bioacoustic and morphological divergence is congruent with those clades demonstrating that Dendropsophus parviceps is a species complex. Dendropsophus parviceps sensu stricto occurs in the Amazon basin of Ecuador, northern Peru, southern Colombia and northwestern Brazil. It is sister to two previously undescribed species, D. kubricki sp. n. from central Peru and D. kamagarini sp. n. from southern Peru, northeastern Bolivia, and northwestern Brazil. Genetic distances (uncorrected p, gene 12S between D. parviceps and the new species is 3 to 4%. Dendropsophus kamagarini sp. n. can be distinguished from D. parviceps by having a prominent conical tubercle on the distal edge of the upper eyelid (tubercle absent in D. parviceps. Dendropsophus kubricki sp. n. differs from D. parviceps by having scattered low tubercles on the upper eyelids (smooth in D. parviceps. Dendropsophus parviceps and both new species differ from all their congeners by their small size (adult maximum SVL = 28.39 mm in females, 22.73 mm in males and by having a bright orange blotch on the hidden areas of the shanks and under arms. The advertisement call of the two new species has lower dominant frequency relative to D. parviceps. Probable speciation modes are discussed. Available evidence indicates that ecological speciation along an elevation gradient is unlikely in this species complex.
Pelz, M.; Dewey, R. K.; Hoeberechts, M.; Kanes, K.; Ewing, N.
Presented by the Ocean Networks Canada (ONC) Leaning and Engagement team, this demonstration focuses on our strategy for engaging and inspiring the next generation of ocean advocates by introducing them to one of the ocean's most charismatic inhabitants: marine mammals (and don't worry, we don't need any tanks or neoprene suits to do it). Using bioacoustic data, we can bring the essence of the animals with us. ONC, an initiative of the University of Victoria, operates cabled ocean observatories which supply continuous power and Internet connectivity to a broad suite of subsea instruments from the coast to the deep sea. This Internet connectivity permits researchers, students and members of the public to download freely available data onto their computers from anywhere around the globe, in real-time. Our demo focuses on the story of bioacoustics from instrument to animal. When visiting classrooms or hosting booths, we enhance user knowledge and experience by connecting familiar animals with their acoustic data from hydrophones. This includes listening to hydrophone clips collected from the network, analyzing sounds using interactive, real-time software and playing interactive games designed to get participants thinking like a scientist and taking a whale's perspective. For example, participants listen to recordings and guess the sound, identify frequencies and try a working hydrophone. The presentation consists of a suite of activities that meet a broad range of Next Generation Science Standards and includes links to the SoundCloud, https://soundcloud.com/oceannetworkscanada the ONC hydrophone FAQ, http://www.oceannetworks.ca/smart-hydrophone-faq and a classroom ready resource, Shouting Whales http://openschool.bc.ca/shouting_whales/index.html . The included links allow users anywhere to have a similar whale "experience" as the data are classroom ready, accessible and free.
Full Text Available One of the most characteristic and abundant amphibian taxa of South American temperate forests is Eupsophus. The ten currently recognized species of the genus have been divided in two species groups, roseus and vertebralis, but most of them, eight, belong to the roseus group. Recent phylogeographic and phylogenetic studies have suggested that species diversity of the roseus group could be underestimated. An examination of the literature shows that species of the roseus group exhibit high levels of variation in their external characteristics, particularly those used as diagnostic characters, which compromises their taxonomy and hinders their field recognition. High levels of variation were also observed in several new populations of the roseus group discovered in southern Chile (36°-40°S, which could not be identified to the species level by their external characteristics. On the other hand, the literature reveals a scarse karyotype differentiation and a high bioacoustic uniformity among the species of the roseus group. We performed a Bayesian phylogenetic analysis using mitochondrial and nuclear genes to reevaluate the species diversity of the roseus group, including all the nominal species of Eupsophus and new populations. This analysis was complemented with three species delimitation approaches, General Mixed Yule Coalescent, multi-rate Poisson Tree Process and Automatic Barcode Gap Discovery. We favored a conservative delimitation of only four species for the roseus group, a result more consistent with the distribution of pairwise genetic distances, and the available chromosome and bioacoustic evidence. The four recognized lineages, which have nearly completely allopatric distributions, are named after the earliest nominal species that they include, but because high levels of phenotypic variation, they are not diagnosable by consistent differences in external morphology. We discuss the implications of this new proposal for the taxonomy and
Hasiniaina, Alida F; Scheumann, Marina; Rina Evasoa, Mamy; Braud, Diane; Rasoloharijaona, Solofonirina; Randrianambinina, Blanchard; Zimmermann, Elke
The critically endangered Claire's mouse lemur, only found in the evergreen rain forest of the National Park Lokobe (LNP) and a few lowland evergreen rain forest fragments of northern Madagascar, was described recently. The present study provides the first quantified information on vocal acoustics of calls, sound associated behavioral context, acoustic niche, and vocal activity of this species. We recorded vocal and social behavior of six male-female and six male-male dyads in a standardized social-encounter paradigm in June and July 2016 at the LNP, Nosy Bé island. Over six successive nights per dyad, we audio recorded and observed behaviors for 3 hr at the beginning of the activity period. Based on the visual inspection of spectrograms and standardized multiparametric sound analysis, we identified seven different call types. Call types can be discriminated based on a combination of harmonicity, fundamental frequency variation, call duration, and degree of tonality. Acoustic features of tonal call types showed that for communication, mouse lemurs use the cryptic, high frequency/ultrasonic frequency niche. Two call types, the Tsak and the Grunt call, were emitted most frequently. Significant differences in vocal activity of the Tsak call were found between male-female and male-male dyads, linked primarily to agonistic conflicts. Dominant mouse lemurs vocalized more than subdominant ones, suggesting that signaling may present an honest indicator of fitness. A comparison of our findings of the Claire's mouse lemur with published findings of five bioacoustically studied mouse lemur species points to the notion that a complex interplay between ecology, predation pressure, and phylogenetic relatedness may shape the evolution of acoustic divergence between species in this smallest-bodied primate radiation. Thus, comparative bioacoustic studies, using standardized procedures, are promising to unravel the role of vocalization for primate species diversity and evolution
Keister, J. E.; Essington, T.; Li, L.; Horne, J. K.; Sato, M.; Parker-Stetter, S. L.; Moriarty, P.
Low dissolved oxygen (hypoxia) is one of the most pronounced, pervasive, and significant disturbances in marine ecosystems, yet our understanding of its effects is incomplete, particularly with respect to impacts on lower trophic levels. As part of a study of how hypoxia affects predator-prey relationships and energy flow through marine food webs, we are studying relationships between ocean chemistry and zooplankton in Puget Sound, Washington—a deep, seasonally hypoxic fjord in the Pacific Northwest that supports a productive and diverse pelagic community. From summer through fall in two years that differed in the timing and intensity of hypoxia, we conducted multi-frequency bioacoustic surveys, CTD casts, and depth-stratified zooplankton sampling to examine changes in distribution and species composition of animals in relation to oxygen concentrations. We exploited a natural gradient in oxygen along the axis of the fjord by sampling at moderately hypoxic and normoxic sites with otherwise similar hydrography and species composition to disentangle the effects of oxygen from changes in other environmental factors. Our results support the hypothesis that zooplankton species composition and vertical distributions are altered by hypoxia, but only when examined at the species and life-stage level. Relatively few taxa showed clear responses to hypoxia, and bioacoustic backscatter data (which was dominated by adult euphausiids and amphipods) indicated that those taxa were not affected by the levels of hypoxia we observed. Examination of net tow data revealed more subtle changes, including behavioral avoidance of low oxygen by some copepods and young euphausiid life stages. Overall, the high species diversity and relatively low susceptibility of many zooplankton to hypoxia in Puget Sound may confer ecosystem resilience to near-future projected changes in this region.
Obrist, M K; Fenton, M B; Eger, J L; Schlegel, P A
Using a moveable loudspeaker and an implanted microphone, we studied the sound pressure transformation of the external ears of 47 species of bats from 13 families. We compared pinna gain, directionality of hearing and interaural intensity differences (IID) in echolocating and non-echolocating bats, in species using different echolocation strategies and in species that depend upon prey-generated sounds to locate their targets. In the Pteropodidae, two echolocating species had slightly higher directionality than a non-echolocating species. The ears of phyllostomid and vespertilionid species showed moderate directionality. In the Mormoopidae, the ear directionality of Pteronotus parnellii clearly matched the dominant spectral component of its echolocation calls, unlike the situation in three other species. Species in the Emballonuridae, Molossidae, Rhinopomatidae and two vespertilionids that use narrow-band search-phase echolocation calls showed increasingly sharp tuning of the pinna to the main frequency of their signals. Similar tuning was most evident in Hipposideridae and Rhinolophidae, species specialized for flutter detection via Doppler-shifted echoes of high-duty-cycle narrow-band signals. The large pinnae of bats that use prey-generated sounds to find their targets supply high sound pressure gain at lower frequencies. Increasing domination of a narrow spectral band in echolocation is reflected in the passive acoustic properties of the external ears (sharper directionality). The importance of IIDs for lateralization and horizontal localization is discussed by comparing the behavioural directional performance of bats with their bioacoustical features.
Lattenkamp, Ella Z; Mandák, Martin; Scherz, Mark D
We describe the calls of Stumpffia be Köhler, Vences, D'Cruze & Glaw, 2010. This is the first call description made for a species belonging to the large-bodied northern Madagascan radiation of Stumpffia Boettger, 1881. Stumpffia is a genus of small (~9-28 mm) microhylid frogs in the Madagascar-endemic subfamily Cophylinae Cope. Little is known about their reproductive strategies. Most species are assumed to lay their eggs in foam nests in the leaf litter of Madagascar's humid and semi-humid forests (Glaw & Vences 1994; Klages et al. 2013). They exhibit some degree of parental care, with the males guarding the nest after eggs are laid (Klages et al. 2013). The bioacoustic repertoire of these frogs is thought to be limited, and there are two distinct call structures known for the genus: the advertisement call of the type species, S. psologlossa Boettger, 1881, is apparently unique in being a trill of notes repeated in short succession. All other species from which calls are known emit single, whistling or chirping notes (Vences & Glaw 1991; Vences et al. 2006).
Kong, Shen Shen; Zheng, Rong Quan; Zhang, Qi Peng
The genus Quasipaa (Family Dicroglossidae) is currently composed of 11 species distributed in China and Southeast Asia: Quasipaa acanthophora (Dubois & Ohler 2009), Q. boulengeri (Günther 1889), Q. courtoisi (Angel 1922), Q. delacouri (Angel 1928), Q. exilispinosa (Liu & Hu, 1975), Q. fasciculispina (Inger 1970), Q. jiulongensis (Huang & Liu, 1985), Q. shini (Ahl 1930), Q. spinosa (David 1875), Q. verrucospinosa (Bourret 1937), Q. yei (Chen, Qu & Jiang 2002) (Frost 2016). These species are morphologically similar, and their taxonomy is subject to controversy (Che et al. 2009). Analyses of nuclear and mitochondrial genes suggest the genus likely encompass additional cryptic species (Ye et al. 2013). Bioacoustics has contributed to studies on the taxonomy of the genus (Ye et al. 2013; Shen et al. 2015), however, to date, only the advertisement calls of Q. spinosa are known (Yu & Zheng 2009; Chen et al. 2012; Shen et al. 2015). Here, we describe the advertisement calls of Q. shini, which inhabits streams in the southern part of central China(Guizhou, Hunan, Guangxi and Jiangxi) and is characterized by the presence of keratinized skin spines on the lateral surfaces of the body.
Christopher Michael Johnson
Full Text Available The distribution and use of pelagic habitat by sperm whales (Physeter macrocephalus is poorly understood in the south-eastern Indian Ocean off Western Australia. However, a variety of data are available via online portals where records of historical expeditions, commercial whaling operations, and modern scientific research voyages can now be accessed. Crowdsourcing these online data allows collation of presence-only information of animals and provides a valuable tool to help augment areas of low research effort. Four data sources were examined, the primary one being the Voyage of the Odyssey expedition, a five-year global study of sperm whales and ocean pollution. From December 2001-May 2002, acoustic surveys were conducted along 5,200 nautical miles of transects off Western Australia including the Perth Canyon and historical whaling grounds off Albany; 60 tissue biopsy samples were also collected. To augment areas not surveyed by the RV Odyssey, historical Yankee whaling data (1712-1920, commercial whaling data (1904-1999, and citizen science reports of sperm whale sightings (1990-2003 were used. Using Maxent, a species distribution modeling tool, we found that the submarine canyons off Albany and Perth provide important habitat for sperm whales. Current technology, along with current understanding of sperm whale bioacoustics and habitat preferences, provides strong motivation for undertaking long-term passive acoustic studies that can monitor the sperm whale population within Australia’s EEZ waters (Perth and Albany canyons as a way of informing future marine management and policy decisions.
Full Text Available Insects have evolved a variety of structures and mechanisms to produce sounds, which are used for communication both within and between species. Among acoustic insects, cicada males are particularly known for their loud and diverse sounds which function importantly in communication. The main method of sound production in cicadas is the tymbal mechanism, and a relative small number of cicada species possess both tymbal and stridulatory organs. However, cicadas of the genus Karenia do not have any specialized sound-producing structures, so they are referred to as "mute". This denomination is quite misleading, as they indeed produce sounds. Here, we investigate the sound-producing mechanism and acoustic communication of the "mute" cicada, Karenia caelatata, and discover a new sound-production mechanism for cicadas: i.e., K. caelatata produces impact sounds by banging the forewing costa against the operculum. The temporal, frequency and amplitude characteristics of the impact sounds are described. Morphological studies and reflectance-based analyses reveal that the structures involved in sound production of K. caelatata (i.e., forewing, operculum, cruciform elevation, and wing-holding groove on scutellum are all morphologically modified. Acoustic playback experiments and behavioral observations suggest that the impact sounds of K. caelatata are used in intraspecific communication and function as calling songs. The new sound-production mechanism expands our knowledge on the diversity of acoustic signaling behavior in cicadas and further underscores the need for more bioacoustic studies on cicadas which lack tymbal mechanism.
Berrian, Alexander; Saito, Naoki
In recent years, the synchrosqueezing transform (SST) has gained popularity as a method for the analysis of signals that can be broken down into multiple components determined by instantaneous amplitudes and phases. One such version of SST, based on the short-time Fourier transform (STFT), enables the sharpening of instantaneous frequency (IF) information derived from the STFT, as well as the separation of amplitude-phase components corresponding to distinct IF curves. However, this SST is limited by the time-frequency resolution of the underlying window function, and may not resolve signals exhibiting diverse time-frequency behaviors with sufficient accuracy. In this work, we develop a framework for an SST based on a "quilted" short-time Fourier transform (SST-QSTFT), which allows adaptation to signal behavior in separate time-frequency regions through the use of multiple windows. This motivates us to introduce a discrete reassignment frequency formula based on a finite difference of the phase spectrum, ensuring computational accuracy for a wider variety of windows. We develop a theoretical framework for the SST-QSTFT in both the continuous and the discrete settings, and describe an algorithm for the automatic selection of optimal windows depending on the region of interest. Using synthetic data, we demonstrate the superior numerical performance of SST-QSTFT relative to other SST methods in a noisy context. Finally, we apply SST-QSTFT to audio recordings of animal calls to demonstrate the potential of our method for the analysis of real bioacoustic signals.
de Diego, Juan Ignacio; Prim, María Pilar
The importance of otorhinolaryngology as a separate branch of medicine has grown in the last decades. The objective of this work is to analyze the doctoral theses in ENT presented in Spain between 1976 and 2005. The TESEO database was searched for theses on otorhinolaryngology produced in Spain between 1976 and 2005. The search criteria used were the terms "Otorhinolaryngology," "Ear, nose, and throat surgery," "Hearing physiology," "Vestibular physiology," "Hearing physics," and "Bioacoustics". 468 theses were found (15.6 theses/year). Of these, 343 (73.6 %) were submitted by otorhinolaryngologists. The Universities of Valencia (Estudi General) (49), Complutense of Madrid (42), Salamanca (39), Barcelona (35), and Autònoma of Barcelona (31) accounted for most of the theses. The name of the supervisor was listed in 376 of the 468 theses (80.4 %); 286 of them had only 1 supervisor (76.1 %) and 90 had 2 (23.9 %). The most frequent topics were otology and audiology (35.1 %). Otorhinolaryngology in Spain has produced a similar number of theses as other areas of knowledge evaluated. The supervision of theses has tended to be shared in the most recent years studied. The number of theses submitted each year did not have only academic influences but also non-academic reasons.
Redondo, J. M.; Babiano, A.; Fraunie, P.; Blanes, N.
Since 1997, the Campus Universitari de la Mediterrania, an independent institution created jointly by the Vilanova i la Geltru City council, The Politechnic University of Catalonia (at Barcelona) and the Generalitat (Local Goverment) of Catalonia. Has organized different types of summer schools at different levels of speciality ranging from cultural and continuing education to advanced post-doctoral level. The number of students has risen from 300 to about a thousand, with many students being able to transfer ETCS credits gained at CUM to other institutions or universities. In the ambit of environmental sciences and engineering, at least two courses (typically one week / 20-30 hours of lectures) and 2 workshops (2-3 days 16-20 hours of seminars) have been organized since 1999. Funding from a variety of sources, ERCOFTAC, EGU, NATO, etc.. including Socrates/Erasmus European Union Grants allow to gather groups of enthusiastic master and phD students with world wide lecturers to focus on specific subjets such as Ocean Mixing, Bioacoustics, Turbulence, Astrophysics, Climate change, turbulence modelling, etc..
Luo, Changqing; Wei, Cong; Nansen, Christian
Insects have evolved a variety of structures and mechanisms to produce sounds, which are used for communication both within and between species. Among acoustic insects, cicada males are particularly known for their loud and diverse sounds which function importantly in communication. The main method of sound production in cicadas is the tymbal mechanism, and a relative small number of cicada species possess both tymbal and stridulatory organs. However, cicadas of the genus Karenia do not have any specialized sound-producing structures, so they are referred to as "mute". This denomination is quite misleading, as they indeed produce sounds. Here, we investigate the sound-producing mechanism and acoustic communication of the "mute" cicada, Karenia caelatata, and discover a new sound-production mechanism for cicadas: i.e., K. caelatata produces impact sounds by banging the forewing costa against the operculum. The temporal, frequency and amplitude characteristics of the impact sounds are described. Morphological studies and reflectance-based analyses reveal that the structures involved in sound production of K. caelatata (i.e., forewing, operculum, cruciform elevation, and wing-holding groove on scutellum) are all morphologically modified. Acoustic playback experiments and behavioral observations suggest that the impact sounds of K. caelatata are used in intraspecific communication and function as calling songs. The new sound-production mechanism expands our knowledge on the diversity of acoustic signaling behavior in cicadas and further underscores the need for more bioacoustic studies on cicadas which lack tymbal mechanism.
Luo, Changqing; Wei, Cong; Nansen, Christian
Insects have evolved a variety of structures and mechanisms to produce sounds, which are used for communication both within and between species. Among acoustic insects, cicada males are particularly known for their loud and diverse sounds which function importantly in communication. The main method of sound production in cicadas is the tymbal mechanism, and a relative small number of cicada species possess both tymbal and stridulatory organs. However, cicadas of the genus Karenia do not have any specialized sound-producing structures, so they are referred to as “mute”. This denomination is quite misleading, as they indeed produce sounds. Here, we investigate the sound-producing mechanism and acoustic communication of the “mute” cicada, Karenia caelatata, and discover a new sound-production mechanism for cicadas: i.e., K. caelatata produces impact sounds by banging the forewing costa against the operculum. The temporal, frequency and amplitude characteristics of the impact sounds are described. Morphological studies and reflectance-based analyses reveal that the structures involved in sound production of K. caelatata (i.e., forewing, operculum, cruciform elevation, and wing-holding groove on scutellum) are all morphologically modified. Acoustic playback experiments and behavioral observations suggest that the impact sounds of K. caelatata are used in intraspecific communication and function as calling songs. The new sound-production mechanism expands our knowledge on the diversity of acoustic signaling behavior in cicadas and further underscores the need for more bioacoustic studies on cicadas which lack tymbal mechanism. PMID:25714608
Caminer, Marcel A.; Milá, Borja; Jansen, Martin; Fouquet, Antoine; Venegas, Pablo J.; Chávez, Germán; Lougheed, Stephen C.
Genetic data in studies of systematics of Amazonian amphibians frequently reveal that purportedly widespread single species in reality comprise species complexes. This means that real species richness may be significantly higher than current estimates. Here we combine genetic, morphological, and bioacoustic data to assess the phylogenetic relationships and species boundaries of two Amazonian species of the Dendropsophus leucophyllatus species group: D. leucophyllatus and D. triangulum. Our results uncovered the existence of five confirmed and four unconfirmed candidate species. Among the confirmed candidate species, three have available names: Dendropsophus leucophyllatus, Dendropsophus triangulum, and Dendropsophus reticulatus, this last being removed from the synonymy of D. triangulum. A neotype of D. leucophyllatus is designated. We describe the remaining two confirmed candidate species, one from Bolivia and another from Peru. All confirmed candidate species are morphologically distinct and have much smaller geographic ranges than those previously reported for D. leucophyllatus and D. triangulum sensu lato. Dendropsophus leucophyllatus sensu stricto occurs in the Guianan region. Dendropsophus reticulatus comb. nov. corresponds to populations in the Amazon basin of Brazil, Ecuador, and Peru previously referred to as D. triangulum. Dendropsophus triangulum sensu stricto is the most widely distributed species; it occurs in Amazonian Ecuador, Peru and Brazil, reaching the state of Pará. We provide accounts for all described species including an assessment of their conservation status. PMID:28248998
Nowak, Karolina M; Nowak, Lukasz J
The force with which the diaphragm chestpiece of a stethoscope is pressed against the body of a patient during an auscultation examination introduces the initial stress and deformation to the diaphragm and the underlying tissues, thus altering the acoustic parameters of the sound transmission path. If the examination is performed by an experienced physician, he will intuitively adjust the amount of the force in order to achieve the optimal sound quality. However, in case of becoming increasingly popular auto-diagnosis and telemedicine auscultation devices with no such feedback mechanisms, the question arises regarding the influence of the possible force mismatch on the parameters of the recorded signal. The present study describes the results of the experimental investigations on the relation between pressure applied to the chestpiece of a stethoscope and parameters of the transmitted bioacoustic signals. The experiments were carried out using various stethoscopes connected to a force measurement system, which allowed to maintain fixed pressure during auscultation examinations. The signals were recorded during examinations of different volunteers, at various auscultation sites. The obtained results reveal strong individual and auscultation-site variability. It is concluded that the underlying tissue deformation is the primary factor that alters the parameters of the recorded signals. Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://www.bmj.com/company/products-services/rights-and-licensing/.
Erbe, Christine; Reichmuth, Colleen; Cunningham, Kane; Lucke, Klaus; Dooling, Robert
Underwater noise, whether of natural or anthropogenic origin, has the ability to interfere with the way in which marine mammals receive acoustic signals (i.e., for communication, social interaction, foraging, navigation, etc.). This phenomenon, termed auditory masking, has been well studied in humans and terrestrial vertebrates (in particular birds), but less so in marine mammals. Anthropogenic underwater noise seems to be increasing in parts of the world's oceans and concerns about associated bioacoustic effects, including masking, are growing. In this article, we review our understanding of masking in marine mammals, summarise data on marine mammal hearing as they relate to masking (including audiograms, critical ratios, critical bandwidths, and auditory integration times), discuss masking release processes of receivers (including comodulation masking release and spatial release from masking) and anti-masking strategies of signalers (e.g. Lombard effect), and set a research framework for improved assessment of potential masking in marine mammals. Copyright © 2015 The Authors. Published by Elsevier Ltd.. All rights reserved.
Song, Zhongchang; Zhang, Yu; Berggren, Per; Wei, Chong
Computed tomography (CT) imaging and ultrasound experimental measurements were combined to reconstruct the acoustic properties (density, velocity, and impedance) of the head from a deceased Indo-Pacific humpback dolphin (Sousa chinensis). The authors extracted 42 soft forehead tissue samples to estimate the sound velocity and density properties at room temperature, 25.0 °C. Hounsfield Units (HUs) of the samples were read from CT scans. Linear relationships between the tissues' HUs and velocity, and HUs and density were revealed through regression analyses. The distributions of the head acoustic properties at axial, coronal, and sagittal cross sections were reconstructed, suggesting that the forehead soft tissues were characterized by low-velocity in the melon, high-velocity in the muscle and connective tissues. Further, the sound velocities of melon, muscle, and connective tissue pieces were measured under different temperatures to investigate tissues' velocity response to temperature. The results demonstrated nonlinear relationships between tissues' sound velocity and temperature. This study represents a first attempt to provide general information on acoustic properties of this species. The results could provide meaningful information for understanding the species' bioacoustic characteristics and for further investigation on sound beam formation of the dolphin.
Brown, Judith C
Formulas for the spectra of pulsed vocalizations for both the continuous and discrete cases are rigorously derived from basic formulas for Fourier analysis, a topic discussed qualitatively in Watkins' classic paper on "the harmonic interval" ["The harmonic interval: Fact or artifact in spectral analysis of pulse trains," in Marine Bioacoustics 2, edited by W. N. Tavogla (Pergamon, New York, 1967), pp. 15-43]. These formulas are summarized in a table for easy reference, along with most of the corresponding graphs. The case of a "pulse tone" is shown to involve multiplication of two temporal wave forms, corresponding to convolution in the frequency domain. This operation is discussed in detail and shown to be equivalent to a simpler approach using a trigonometric formula giving sum and difference frequencies. The presence of a dc component in the temporal wave form, which implies physically that there is a net positive pressure at the source, is discussed, and examples of the corresponding spectra are calculated and shown graphically. These have application to biphonation (two source signals) observed for some killer whale calls and implications for a source mechanism. A MATLAB program for synthesis of a similar signal is discussed and made available online.
Miksis-Olds, Jennifer L.; Donaghay, Percy L.; Miller, James H.; Tyack, Peter L.
Manatees inhabit coastal bays, lagoons, and estuaries because they are dependent on the aquatic vegetation that grows in shallow waters. Food requirements force manatees to occupy the same areas in which human activities are the greatest. Noise produced from human activities has the potential to affect these animals by eliciting responses ranging from mild behavioral changes to extreme aversion. This study quantifies the behavioral responses of manatees to both changing levels of ambient noise and transient noise sources. Results indicate that elevated environmental noise levels do affect the overall activity budget of this species. The proportion of time manatees spend feeding, milling, and traveling in critical habitats changed as a function of noise level. More time was spent in the directed, goal-oriented behaviors of feeding and traveling, while less time was spent milling when noise levels were highest. The animals also responded to the transient noise of approaching vessels with changes in behavioral state and movements out of the geographical area. This suggests that manatees detect and respond to changes in environmental noise levels. Whether these changes legally constitute harassment and produce biologically significant effects need to be addressed with hypothesis-driven experiments and long-term monitoring. [For Animal Bioacoustics Best Student Paper Award.
William A Ahroon
Full Text Available Damage-risk criteria (DRC for noise exposures are designed to protect 95% of the exposed populations from hearing injuries caused by those noise exposures. The current DRC used by the US military follows OSHA guidelines for continuous noise. The current military DRC for impulse exposures follows the recommendations from the National Academy of Sciences - National Research Council Committee on Hearing, Bioacoustics, and Biomechanics (CHABA and are contained in the current military standard, MIL-STD-1474D "Noise Limits." Suggesting that the MIL-STD for impulse exposure is too stringent, various individuals have proposed that the DRC for exposure to high-level impulses be relaxed. The purpose of this study is to evaluate the current hearing status of US Army Soldiers, some of whom can be, by their military occupational specialties (MOS, reasonably expected to be routinely exposed to high-level impulses from weapon systems. The Defense Occupational and Environmental Health Readiness System - Hearing Conservation (DOEHRS-HC was queried for the hearing status of enlisted Soldiers of 32 different MOSs. The results indicated that less than 95% of the Soldiers in the DOEHRS-HC database were classified as having normal hearing. In other words, the goal of the DRC used for limiting noise injuries (from continuous and impulse exposures was not stringent enough to prevent hearing injuries in all but the most susceptible Soldiers. These results suggest that the current military noise DRC should not be relaxed.
Full Text Available The systematics of the cophyline microhylid frog genera Plethodontohyla and Rhombophryne have long been intertwined, and their relationships have only recently started to become clear. While Rhombophryne has received a lot of recent taxonomic attention, Plethodontohyla has been largely neglected. Our study is a showcase of just how complex the taxonomic situation between these two genera is, and the care that must be taken to resolve taxonomic conundrums where old material, multiple genus transitions, and misattribution of new material obfuscate the picture. We assessed the identity of the historic names Dyscophus alluaudi (currently in the genus Rhombophryne, Phrynocara laeve and Plethodontohyla laevis tsianovohensis (both synonyms of Rhombophryne alluaudi based on an integrative taxonomic approach harnessing genetics, external morphology, osteological data obtained via micro-Computed Tomography (micro-CT and bioacoustics. We show that (1 the holotype of Dyscophus alluaudi is a member of the genus Plethodontohyla; (2 the Rhombophryne specimens from central Madagascar currently assigned to Rhombophryne alluaudi have no affinity with that species, and are instead an undescribed species; and (3 Phrynocara laeve and Dyscophus alluaudi are not synonymous, but represent closely related species, whereas Plethodontohyla laevis tsianovohensis is tentatively confirmed as synonym of D. alluaudi. We resurrect and re-describe Plethodontohyla laevis, and re-allocate and re-describe Plethodontohyla alluaudi on the basis of new and historic material.
Full Text Available We review the systematics of the Hypsiboas calcaratus species complex, a group of widely distributed Amazonian hylid frogs. A comprehensive analysis of genetic, morphological, and bioacoustic datasets uncovered the existence of eleven candidate species, six of which are confirmed. Two of them correspond to Hypsiboas fasciatus and Hypsiboas calcaratus and the remaining four are new species that we describe here. Hypsiboas fasciatus sensu stricto has a geographic range restricted to the eastern Andean foothills of southern Ecuador while Hypsiboas calcaratus sensu stricto has a wide distribution in the Amazon basin. Hypsiboas almendarizae sp. n. occurs at elevations between 500 and 1950 m in central and northern Ecuador; the other new species (H. maculateralis sp. n., H. alfaroi sp. n., and H. tetete sp. n. occur at elevations below 500 m in Amazonian Ecuador and Peru. The new species differ from H. calcaratus and H. fasciatus in morphology, advertisement calls, and mitochondrial and nuclear DNA sequences. Five candidate species from the Guianan region, Peru, and Bolivia are left as unconfirmed. Examination of the type material of Hyla steinbachi, from Bolivia, shows that it is not conspecific with H. fasciatus and thus is removed from its synonymy.
Zeppelzauer, Matthias; Hensman, Sean; Stoeger, Angela S
The human-elephant conflict is one of the most serious conservation problems in Asia and Africa today. The involuntary confrontation of humans and elephants claims the lives of many animals and humans every year. A promising approach to alleviate this conflict is the development of an acoustic early warning system. Such a system requires the robust automated detection of elephant vocalizations under unconstrained field conditions. Today, no system exists that fulfills these requirements. In this paper, we present a method for the automated detection of elephant vocalizations that is robust to the diverse noise sources present in the field. We evaluate the method on a dataset recorded under natural field conditions to simulate a real-world scenario. The proposed method outperformed existing approaches and robustly and accurately detected elephants. It thus can form the basis for a future automated early warning system for elephants. Furthermore, the method may be a useful tool for scientists in bioacoustics for the study of wildlife recordings.
Vieites, David R; Wollenberg, Katharina C; Andreone, Franco; Köhler, Jörn; Glaw, Frank; Vences, Miguel
Amphibians are in decline worldwide. However, their patterns of diversity, especially in the tropics, are not well understood, mainly because of incomplete information on taxonomy and distribution. We assess morphological, bioacoustic, and genetic variation of Madagascar's amphibians, one of the first near-complete taxon samplings from a biodiversity hotspot. Based on DNA sequences of 2,850 specimens sampled from over 170 localities, our analyses reveal an extreme proportion of amphibian diversity, projecting an almost 2-fold increase in species numbers from the currently described 244 species to a minimum of 373 and up to 465. This diversity is widespread geographically and across most major phylogenetic lineages except in a few previously well-studied genera, and is not restricted to morphologically cryptic clades. We classify the genealogical lineages in confirmed and unconfirmed candidate species or deeply divergent conspecific lineages based on concordance of genetic divergences with other characters. This integrative approach may be widely applicable to improve estimates of organismal diversity. Our results suggest that in Madagascar the spatial pattern of amphibian richness and endemism must be revisited, and current habitat destruction may be affecting more species than previously thought, in amphibians as well as in other animal groups. This case study suggests that worldwide tropical amphibian diversity is probably underestimated at an unprecedented level and stresses the need for integrated taxonomic surveys as a basis for prioritizing conservation efforts within biodiversity hotspots.
Full Text Available Rising habitat loss is one of the main drivers of the global amphibian decline. Nevertheless, knowledge of amphibian diversity needed for effective habitat protection is still highly inadequate in remote tropical regions, the greater part of the Amazonia. In this study we integrated molecular, morphological and bioacoustic evidence to evaluate the species richness of the treefrogs genus Scinax over a 1000 km transect across rainforest of the Purus-Madeira interfluve, and along the east bank of the upper Madeira river, Brazilian Amazonia. Analysis revealed that 82% of the regional species richness of Scinax is still undescribed; two nominal species, seven confirmed candidate species, two unconfirmed candidate species, and one deep conspecific lineage were detected in the study area. DNA barcoding based analysis of the 16s rRNA gene indicates possible existence of three discrete species groups within the genus Scinax, in addition to the already-known S. rostratus species Group. Quantifying and characterizing the number of undescribed Scinax taxa on a regional scale, we provide a framework for future taxonomic study in Amazonia. These findings indicate that the level to which Amazonian anura species richness has been underestimated is far greater than expected. Consequently, special attention should be paid both to taxonomic studies and protection of the still-neglected Amazonian Scinax treefrogs.
Saenz, B. T.; Daly, K. L.; Kim, S.; Ainley, D. G.; Ballard, G.
McMurdo Sound, Antarctica, represents a unique environment for study of trophic interactions, where a full complement of marine predators thrive. As part of a greater study of McMurdo Sound food web interactions, including ocean and ice physics, algal characterization, and predator behavior, macrozooplankton and fish were surveyed using bioacoustics and video using a specially-designed under-ice ROV. Acoustic returns from 82 under-ice surveys were divided into classes consisting of krill, silverfish, and weak scatters. Krill were scarce during surveys in late November, but increased in abundance in association with increasing chlorophyll a in December and early January when surveys ended. The greatest concentrations of krill were found near Ross Island in the eastern Sound, where southerly currents move high-productivity waters beneath the fast ice. Conversely, silverfish, especially schools of juveniles, were found in greater abundance toward the west where currents flow northward and platelet ice typically blocked light from surface waters. Silverfish were rare toward the end of the survey in late December/early January, but possibly had moved deeper than the acoustic instrument could detect. Overall, krill were less abundant and occurred deeper in the water column within 2 km of the fast ice edge, which was accessible by air-breathing predators, suggesting that predation pressure helped structure krill abundance or distribution. Acoustic returns from weak scatters, which included observed jellies, pteropods, detached ice algae and potentially other mesoplankton in high abundance such as copepods, also increased during the study period and co-occurred with chlorophyll a. The patterns of macrozooplankton and fish observed in McMurdo Sound raise important questions about source-sink dynamics, overwinter strategies of mid-trophic organisms, prey-predator dynamics, and sea-ice structuring of ecosystems.
Sams-Dodd, F; Capranica, R R
A systematic study of the encoding properties of 146 auditory nerve fibers in the Tokay gecko (Gekko gecko, L) was conducted with respect to pure tones and two-tone rate suppression. Our aim was a comprehensive understanding of the peripheral encoding of simple tonal stimuli and their representation by temporal synchronization and spike rate codes as a prelude to subsequent studies of more complex signals. Auditory nerve fibers in the Tokay gecko have asymmetrical, V-shaped excitatory tuning curves with best excitatory frequencies that range from 200-5100 Hz and thresholds between 4-35 dB SPL. A low-frequency excitatory 'tail' extends far into the low-frequency range and two-tone suppression is present only on the high frequency side of the tuning curve. The response properties to pure tones at different loci within a tuning curve can differ greatly, due to evident interactions between the representations of temporal, spectral and intensity stimulus features. For frequencies below 1250 Hz, pure tones are encoded by both temporal synchronization and spike rate codes, whereas above this frequency a fiber's ability to encode the waveform periodicity is lost and only a rate code predominates. These complimentary representations within a tuning curve raise fundamental issues which need to be addressed in interpreting how more complex, bioacoustic communication signals are represented in the peripheral and central auditory system. And since auditory nerve fibers in the Tokay gecko exhibit tonal sensitivity, selective frequency tuning, and iso-intensity and iso-frequency contours that seem comparable to similar measures in birds and mammals, these issues likely apply to most higher vertebrates in general. The simpler wiring diagram of the reptilian auditory system, coupled with the Tokay gecko's remarkable vocalizations, make this animal a good evolutionary model in which to experimentally explore the encoding of more complex sounds of communicative significance.
Full Text Available Population monitoring is crucial for wildlife management and conservation. In the last few decades, wildlife researchers have increasingly applied bioacoustics tools to obtain information on several essential ecological parameters, such as distribution and abundance. One such application involves wolves (Canis lupus. These canids respond to simulated howls by emitting group vocalizations known as chorus howls. These responses to simulated howls reveal the presence of wolf litters during the breeding period and are therefore often used to determine the status of wolf populations. However, the acoustic structure of chorus howls is complex and discriminating the presence of pups in a chorus is sometimes difficult, even for experienced observers. In this study, we evaluate the usefulness of analyses of the acoustic energy distribution in chorus howls to identify the presence of pups in a chorus. We analysed 110 Iberian wolf chorus howls with known pack composition and found that the acoustic energy distribution is concentrated at higher frequencies when there are pups vocalizing. We built predictive models using acoustic energy distribution features to determine the presence of pups in a chorus, concluding that the acoustic energy distribution in chorus howls can be used to determine the presence of wolf pups in a pack. The method we outline here is objective, accurate, easily implemented, and independent of the observer's experience. These advantages are especially relevant in the case of broad scale surveys or when many observers are involved. Furthermore, the analysis of the acoustic energy distribution can be implemented for monitoring other social canids that emit chorus howls such as jackals or coyotes, provides an easy way to obtain information on ecological parameters such as reproductive success, and could be useful to study other group vocalizations.
Langhamer, Olivia [Dept. of Animal Ecology, UU, Norbyvaegen 18D, S-75236 Uppsala (Sweden); Swedish Centre for Renewable Electric Energy Conversion, Division for Electricity, Aangstroem Laboratory, Uppsala University, Box 534, S-75121 Uppsala (Sweden); Haikonen, Kalle; Sundberg, Jan [Swedish Centre for Renewable Electric Energy Conversion, Division for Electricity, Aangstroem Laboratory, Uppsala University, Box 534, S-75121 Uppsala (Sweden)
Generating electricity from waves is predicted to be a new source of renewable energy conversion expanding significantly, with a global potential in the range of wind and hydropower. Several wave power techniques are on the merge of commercialisation, and thus evoke questions of environmental concern. Conservation matters are to some extent valid independent of technique but we mainly focus on point absorbing linear generators. By giving examples from the Lysekil project, run by Uppsala University and situated on the Swedish west coast, we demonstrate ongoing and future environmental studies to be performed along with technical research and development. We describe general environmental aspects generated by wave power projects; issues also likely to appear in Environmental Impact Assessment studies. Colonisation patterns and biofouling are discussed with particular reference to changes of the seabed and alterations due to new substrates. A purposeful artificial reef design to specially cater for economically important or threatened species is also discussed. Questions related to fish, fishery and marine mammals are other examples of topics where, e.g. no-take zones, marine bioacoustics and electromagnetic fields are important areas. In this review we point out areas in which studies likely will be needed, as ventures out in the oceans also will give ample opportunities for marine environmental research in general and in areas not previously studied. Marine environmental and ecological aspects appear to be unavoidable for application processes and in post-deployment studies concerning renewable energy extraction. Still, all large-scale renewable energy conversion will cause some impact mainly by being area demanding. An early incorporation of multidisciplinary and high quality research might be a key for new ocean-based techniques. (author)
André, Michel; Favali, Paolo; Piatteli, Paolo; Miranda, Jorge; Waldmann, Christoph; Esonet Lido Demonstration Mission Team
Understanding the link between natural and anthropogenic processes is essential for predicting the magnitude and impact of future changes of the natural balance of the oceans. Deep-sea observatories have the potential to play a key role in the assessment and monitoring of these changes. ESONET is a European Network of Excellence of deep-sea observatories that includes 55 partners belonging to 14 countries. ESONET NoE is providing data on key parameters from the subsurface down to the seafloor at representative locations that transmit them to shore. The strategies of deployment, data sampling, technological development, standardisation and data management are being integrated with projects dealing with the spatial and near surface time series. LIDO (Listening to the Deep Ocean environment) is one of these projects and proposes to establish a first nucleus of a regional network of multidisciplinary seafloor observatories contributing to the coordination of high quality research in the ESONET NoE by allowing the real-time long-term monitoring of Geohazards and Marine Ambient Noise in the Mediterranean Sea and the adjacent Atlantic waters. Specific activities address the long-term monitoring of earthquakes and tsunamis and the characterisation of ambient noise, marine mammal sounds and anthropogenic sources. The objective of this demonstration mission will be achieved through the extension of the present capabilities of the observatories working in the ESONET key-sites of Eastern Sicily (NEMO-SN1) and of the Gulf of Cadiz (GEOSTAR configured for NEAREST pilot experiment) by installing new sensor equipments related to Bioacoustics and Geohazards, as well as by implementing international standard methods in data acquisition and management.
Prim-Espada, María Pilar; De Diego-Sastre, Juan Ignacio; Pérez-Fernández, Elia
In last decades women in Spain have a greater access to postgraduate education. The objective of this study was to perform a gender analysis on the Otolaryngology doctoral theses presented in a 25 year-period. The TESEO data base on doctoral theses was searched for theses on Otorhinolaryngology written between 1981 and 2005. As strategy for the research we employed the terms: 1) Otorrinolaringología (Otorhinolaryngology); 2) Cirugía de garganta, nariz y oídos (Ear, nose and throat surgery); 3) Fisiología de la audición (Physiology of hearing); 4) Fisiología del equilibrio (Physiology of balance); 5) Física de la audición (Physics of hearing); and 6) Bioacústica (Bioacoustics). A total of 450 theses (18.0±8.3 theses/year) were found, of which 129 were written by females (28.6%). There was a gender imbalance among authors, with 5.2±3.4 theses/year for women vs. 12.9±6.6 theses/year for men (p=0.0002). Nevertheless, there was a tendency toward equality in the last 10 years (p=0.001). On the other hand, the PhD student's gender was clearly related to the supervisor's gender (p=0.0001). With respect to the main topics in our area (otology, audiology/vestibular diseases, rhinology and pathology of paranasal sinuses and neck diseases), there were no significant differences between males and females (p=0.231). These results indicate a tendency towards equality in the number of men and women successfully completing doctoral studies in Otolaryngology. However, the PhD student's gender is clearly related to the supervisor's gender. Copyright © 2010 Elsevier España, S.L. All rights reserved.
López-Bao, José Vicente; Llaneza, Luis; Fernández, Carlos; Font, Enrique
Population monitoring is crucial for wildlife management and conservation. In the last few decades, wildlife researchers have increasingly applied bioacoustics tools to obtain information on several essential ecological parameters, such as distribution and abundance. One such application involves wolves (Canis lupus). These canids respond to simulated howls by emitting group vocalizations known as chorus howls. These responses to simulated howls reveal the presence of wolf litters during the breeding period and are therefore often used to determine the status of wolf populations. However, the acoustic structure of chorus howls is complex and discriminating the presence of pups in a chorus is sometimes difficult, even for experienced observers. In this study, we evaluate the usefulness of analyses of the acoustic energy distribution in chorus howls to identify the presence of pups in a chorus. We analysed 110 Iberian wolf chorus howls with known pack composition and found that the acoustic energy distribution is concentrated at higher frequencies when there are pups vocalizing. We built predictive models using acoustic energy distribution features to determine the presence of pups in a chorus, concluding that the acoustic energy distribution in chorus howls can be used to determine the presence of wolf pups in a pack. The method we outline here is objective, accurate, easily implemented, and independent of the observer's experience. These advantages are especially relevant in the case of broad scale surveys or when many observers are involved. Furthermore, the analysis of the acoustic energy distribution can be implemented for monitoring other social canids that emit chorus howls such as jackals or coyotes, provides an easy way to obtain information on ecological parameters such as reproductive success, and could be useful to study other group vocalizations. PMID:27144887
Guerra, Vinicius; Llusia, Diego; Gambale, Priscilla Guedes; Morais, Alessandro Ribeiro de; Márquez, Rafael; Bastos, Rogério Pereira
Advertisement calls are often used as essential basic information in studies of animal behaviour, ecology, evolution, conservation, taxonomy or biodiversity inventories. Yet the description of this type of acoustic signals is far to be completed, especially in tropical regions, and is frequently non-standardized or limited in information, restricting the application of bioacoustics in science. Here we conducted a scientometric review of the described adverstisement calls of anuran species of Brazil, the world richest territory in anurans, to evaluate the amount, standard and trends of the knowledge on this key life-history trait and to identify gaps and directions for future research strategies. Based on our review, 607 studies have been published between 1960 to 2016 describing the calls of 719 Brazilian anuran species (68.8% of all species), a publication rate of 10.6 descriptions per year. From each of these studies, thirty-one variables were recorded and examined with descriptive and inferential statistics. In spite of an exponential rise over the last six decades in the number of studies, described calls, and quantity of published metadata, as revealed by regression models, clear shortfalls were identified with regard to anuran families, biomes, and categories of threat. More than 55% of these species belong to the two richest families, Hylidae or Leptodactylidae. The lowest percentage of species with described calls corresponds to the most diverse biomes, namely Atlantic Forest (65.1%) and Amazon (71.5%), and to the IUCN categories of threat (56.8%), relative to the less-than-threatened categories (74.3%). Moreover, only 52.3% of the species have some of its calls deposited in the main scientific sound collections. Our findings evidence remarkable knowledge gaps on advertisement calls of Brazilian anuran species, emphasizing the need of further efforts in standardizing and increasing the description of anuran calls for their application in studies of the
Full Text Available The acoustic space in a given environment is filled with footprints arising from three processes: biophony, geophony and anthrophony. Bioacoustic research using passive acoustic sensors can result in thousands of recordings. An important component of processing these recordings is to automate signal detection. In this paper, we describe a new spectrogram-based approach for extracting individual audio events. Spectrogram-based audio event detection (AED relies on separating the spectrogram into background (i.e., noise and foreground (i.e., signal classes using a threshold such as a global threshold, a per-band threshold, or one given by a classifier. These methods are either too sensitive to noise, designed for an individual species, or require prior training data. Our goal is to develop an algorithm that is not sensitive to noise, does not need any prior training data and works with any type of audio event. To do this, we propose: (1 a spectrogram filtering method, the Flattened Local Trimmed Range (FLTR method, which models the spectrogram as a mixture of stationary and non-stationary energy processes and mitigates the effect of the stationary processes, and (2 an unsupervised algorithm that uses the filter to detect audio events. We measured the performance of the algorithm using a set of six thoroughly validated audio recordings and obtained a sensitivity of 94% and a positive predictive value of 89%. These sensitivity and positive predictive values are very high, given that the validated recordings are diverse and obtained from field conditions. The algorithm was then used to extract audio events in three datasets. Features of these audio events were plotted and showed the unique aspects of the three acoustic communities.
Clark, M. L.; Salas, L.; Goetz, S. J.
Soundscapes to Landscapes (S2L) is a citizen science project with the broad goal of advancing scientific understanding of biodiversity and conservation using a combination of new and existing spaceborne sensors. The prototype phase of this project is focused on modeling bird diversity at the watershed scale in Sonoma County, California. The main objectives are to: 1) involve citizen scientists in the collection of in situ field information on bird diversity; 2) assess the accuracy and precision of bioacoustics for the detection and monitoring of individual species and richness; 3) test the predictive strength of spaceborne imaging spectroscopy, lidar, synthetic aperture radar (SAR) sensors for spatial modeling of species occupancy and overall species richness; and 4) use occupancy/richness maps to better understand factors related to conserving animal diversity. In the prototype field campaign, citizen scientists (birders, undergraduate students) deployed portable sound recorders for 3-4 days in various habitats in a local watershed. Over 50,200 minutes (866 hours) of "soundscape" recordings were collected over 3 months. Through a series of "bird blitzes", citizen scientists used the ARBIMON II web-based system to listen to spectrograms (time vs. frequency) of 1-minute recordings, tag bird calls for identifiable species, validate presence/absence of bird species, draw training-set boxes around well-formed calls, and help evaluate Random Forests machine-learning model performance. Bird-call models were applied to all soundscapes to identify presence/absence of 10 indicator species. Another phase of this project involves species distribution modeling in conjunction with C- and L-band SAR imagery, simulated Hyperspectral Infrared Imager (HyspIRI) and Global Ecosystem Dynamics Investigation (GEDI) large-footprint lidar data. Metrics derived from these data provide unique, wall-to-wall information on vegetation chemistry (HyspIRI) and three-dimensional structure (GEDI
Vokurková, Jana; Petrusková, Tereza; Reifová, Radka; Kozman, Alexandra; Mořkovský, Libor; Kipper, Silke; Weiss, Michael; Reif, Jiří; Dolata, Paweł T.; Petrusek, Adam
Bird song plays an important role in the establishment and maintenance of prezygotic reproductive barriers. When two closely related species come into secondary contact, song convergence caused by acquisition of heterospecific songs into the birds’ repertoires is often observed. The proximate mechanisms responsible for such mixed singing, and its effect on the speciation process, are poorly understood. We used a combination of genetic and bioacoustic analyses to test whether mixed singing observed in the secondary contact zone of two passerine birds, the Thrush Nightingale (Luscinia luscinia) and the Common Nightingale (L. megarhynchos), is caused by introgressive hybridization. We analysed song recordings of both species from allopatric and sympatric populations together with genotype data from one mitochondrial and seven nuclear loci. Semi-automated comparisons of our recordings with an extensive catalogue of Common Nightingale song types confirmed that most of the analysed sympatric Thrush Nightingale males were ‘mixed singers’ that use heterospecific song types in their repertoires. None of these ‘mixed singers’ possessed any alleles introgressed from the Common Nightingale, suggesting that they were not backcross hybrids. We also analysed songs of five individuals with intermediate phenotype, which were identified as F1 hybrids between the Thrush Nightingale female and the Common Nightingale male by genetic analysis. Songs of three of these hybrids corresponded to the paternal species (Common Nightingale) but the remaining two sung a mixed song. Our results suggest that although hybridization might increase the tendency for learning songs from both parental species, interspecific cultural transmission is the major proximate mechanism explaining the occurrence of mixed singers among the sympatric Thrush Nightingales. We also provide evidence that mixed singing does not substantially increase the rate of interspecific hybridization and discuss the
Pedro P. G. Taucce
Full Text Available Ischnocnema izecksohni inhabits the gallery forests from the Quadrilátero Ferrífero, Southern Espinhaço range, state of Minas Gerais, southeastern Brazil, and it is considered endemic to this region. Its closest related species is I. nasuta according to the original description. We describe the advertisement call of I. izecksohni based on specimens recorded and collected at the municipality of Nova Lima, state of Minas Gerais, distant about 10 km straight line from its type locality. The advertisement call consists of a group of notes emitted sporadically without a regular interval between the calls. Call duration (n = 36 calls in four individuals ranged from 1.03 to 1.85 s (= 1.52 ± 0.21 s and the call rise time from 0.66 to 1.52 s (= 1.16 ± 0.25 s, with 34-57 notes per call (= 47.42 ± 6.03. Peak frequency ranged from 2250 to 2625 Hz, the dominant frequency from 1317.8 to 3128.0 Hz and interval between notes from 22.00 to 41.00 ms (= 28.63 ± 0.03 ms. From the examination of herpetological collections, morphological and bioacoustical data we extended the species known distribution ca. 200 km eastward, to ten new localities, all of them outside the Quadrilátero Ferrífero region, at the Mantiqueira mountain range. We analyzed color patterns and we find some dorsal patterns not described at the original description of I. izecksohni. We also make some comments concerning the taxonomic status of I. izecksohni and I. nasuta.
Full Text Available Advertisement calls are often used as essential basic information in studies of animal behaviour, ecology, evolution, conservation, taxonomy or biodiversity inventories. Yet the description of this type of acoustic signals is far to be completed, especially in tropical regions, and is frequently non-standardized or limited in information, restricting the application of bioacoustics in science. Here we conducted a scientometric review of the described adverstisement calls of anuran species of Brazil, the world richest territory in anurans, to evaluate the amount, standard and trends of the knowledge on this key life-history trait and to identify gaps and directions for future research strategies. Based on our review, 607 studies have been published between 1960 to 2016 describing the calls of 719 Brazilian anuran species (68.8% of all species, a publication rate of 10.6 descriptions per year. From each of these studies, thirty-one variables were recorded and examined with descriptive and inferential statistics. In spite of an exponential rise over the last six decades in the number of studies, described calls, and quantity of published metadata, as revealed by regression models, clear shortfalls were identified with regard to anuran families, biomes, and categories of threat. More than 55% of these species belong to the two richest families, Hylidae or Leptodactylidae. The lowest percentage of species with described calls corresponds to the most diverse biomes, namely Atlantic Forest (65.1% and Amazon (71.5%, and to the IUCN categories of threat (56.8%, relative to the less-than-threatened categories (74.3%. Moreover, only 52.3% of the species have some of its calls deposited in the main scientific sound collections. Our findings evidence remarkable knowledge gaps on advertisement calls of Brazilian anuran species, emphasizing the need of further efforts in standardizing and increasing the description of anuran calls for their application in
Peter W Alderks
Full Text Available The ontogeny of hearing in fishes has become a major interest among bioacoustics researchers studying fish behavior and sensory ecology. Most fish begin to detect acoustic stimuli during the larval stage which can be important for navigation, predator avoidance and settlement, however relatively little is known about the hearing capabilities of larval fishes. We characterized the acoustically evoked behavioral response (AEBR in the plainfin midshipman fish, Porichthys notatus, and used this innate startle-like response to characterize this species' auditory capability during larval development. Age and size of larval midshipman were highly correlated (r(2 = 0.92. The AEBR was first observed in larvae at 1.4 cm TL. At a size ≥ 1.8 cm TL, all larvae responded to a broadband stimulus of 154 dB re1 µPa or -15.2 dB re 1 g (z-axis. Lowest AEBR thresholds were 140-150 dB re 1 µPa or -33 to -23 dB re 1 g for frequencies below 225 Hz. Larval fish with size ranges of 1.9-2.4 cm TL had significantly lower best evoked frequencies than the other tested size groups. We also investigated the development of the lateral line organ and its function in mediating the AEBR. The lateral line organ is likely involved in mediating the AEBR but not necessary to evoke the startle-like response. The midshipman auditory and lateral line systems are functional during early development when the larvae are in the nest and the auditory system appears to have similar tuning characteristics throughout all life history stages.
Alderks, Peter W; Sisneros, Joseph A
The ontogeny of hearing in fishes has become a major interest among bioacoustics researchers studying fish behavior and sensory ecology. Most fish begin to detect acoustic stimuli during the larval stage which can be important for navigation, predator avoidance and settlement, however relatively little is known about the hearing capabilities of larval fishes. We characterized the acoustically evoked behavioral response (AEBR) in the plainfin midshipman fish, Porichthys notatus, and used this innate startle-like response to characterize this species' auditory capability during larval development. Age and size of larval midshipman were highly correlated (r(2) = 0.92). The AEBR was first observed in larvae at 1.4 cm TL. At a size ≥ 1.8 cm TL, all larvae responded to a broadband stimulus of 154 dB re1 µPa or -15.2 dB re 1 g (z-axis). Lowest AEBR thresholds were 140-150 dB re 1 µPa or -33 to -23 dB re 1 g for frequencies below 225 Hz. Larval fish with size ranges of 1.9-2.4 cm TL had significantly lower best evoked frequencies than the other tested size groups. We also investigated the development of the lateral line organ and its function in mediating the AEBR. The lateral line organ is likely involved in mediating the AEBR but not necessary to evoke the startle-like response. The midshipman auditory and lateral line systems are functional during early development when the larvae are in the nest and the auditory system appears to have similar tuning characteristics throughout all life history stages.
Suryan, Robert [Oregon State Univ., Corvallis, OR (United States). Department of Fisheries and Wildlife; Albertani, Roberto [Oregon State Univ., Corvallis, OR (United States). School of Mechanical, Industrial, and Manufacturing Engineering; Polagye, Brian [Univ. of Washington, Seattle, WA (United States). Department of Mechanical Engineering, Northwest National Marine Renewable Energy Center
Wind energy production in the U.S. is projected to increase to 35% of our nation’s energy by 2050. This substantial increase in the U.S. is only a portion of the global wind industry growth, as many countries strive to reduce greenhouse gas emissions. A major environmental concern and potential market barrier for expansion of wind energy is bird and bat mortality from impacts with turbine blades, towers, and nacelles. Carcass surveys are the standard protocol for quantifying mortality at onshore sites. This method is imperfect, however, due to survey frequency at remote sites, removal of carcasses by scavengers between surveys, searcher efficiency, and other biases as well as delays of days to weeks or more in obtaining information on collision events. Furthermore, carcass surveys are not feasible at offshore wind energy sites. Near-real-time detection and quantification of interaction rates is possible at both onshore and offshore wind facilities using an onboard, integrated sensor package with data transmitted to central processing centers. We developed and experimentally tested an array of sensors that continuously monitors for interactions (including impacts) of birds and bats with wind turbines. The synchronized array includes three sensor nodes: (1) vibration (accelerometers and contact microphones), (2) optical (visual and infrared spectrum cameras), and (3) bioacoustics (acoustic and ultrasonic microphones). Accelerometers and contact acoustic microphones are placed at the root of each blade to detect impact vibrations and sound waves propagating through the structure. On-board data processing algorithms using wavelet analysis detect impact signals exceeding background vibration. Stereo-visual and infrared cameras were placed on the nacelle to allow target tracking, distance, and size calculations. On-board image processing and target detection algorithms identify moving targets within the camera field of view. Bioacoustic recorders monitor vocalizations
Solé, Marta; Lenoir, Marc; Durfort, Mercè; López-Bejar, Manel; Lombarte, Antoni; van der Schaar, Mike; André, Michel
and electron-dense inclusions not seen in the control animals. The lesions described here are new to cephalopod pathology. Given that low-frequency noise levels in the ocean are increasing (e.g. shipping, offshore industry, and naval manoeuvres), that the role of cephalopods in marine ecosystems is only now beginning to be understood, and that reliable bioacoustic data on invertebrates are scarce, the present study and future investigations will bring an important contribution to the sustainable use of the marine environment.
Susan LINGLE, Megan T. WYMAN, Radim KOTRBA, Lisa J. TEICHROEB, Cora A. ROMANOW
vertebrates. Bioacoustic research may move forward by recognizing the commonality among different forms of infant solicitations that attract caregivers, and the commonality of these solicitations with vocalizations that attract conspecifics in still other behavioral contexts [Current Zoology 58 (5: 698-726, 2012].
DelWayne R Bohnenstiehl
Full Text Available Ocean soundscapes convey important sensory information to marine life. Like many mid-to-low latitude coastal areas worldwide, the high-frequency (>1.5 kHz soundscape of oyster reef habitat within the West Bay Marine Reserve (36°N, 76°W is dominated by the impulsive, short-duration signals generated by snapping shrimp. Between June 2011 and July 2012, a single hydrophone deployed within West Bay was programmed to record 60 or 30 seconds of acoustic data every 15 or 30 minutes. Envelope correlation and amplitude information were then used to count shrimp snaps within these recordings. The observed snap rates vary from 1500-2000 snaps per minute during summer to <100 snaps per minute during winter. Sound pressure levels are positively correlated with snap rate (r = 0.71-0.92 and vary seasonally by ~15 decibels in the 1.5-20 kHz range. Snap rates are positively correlated with water temperatures (r = 0.81-0.93, as well as potentially influenced by climate-driven changes in water quality. Light availability modulates snap rate on diurnal time scales, with most days exhibiting a significant preference for either nighttime or daytime snapping, and many showing additional crepuscular increases. During mid-summer, the number of snaps occurring at night is 5-10% more than predicted by a random model; however, this pattern is reversed between August and April, with an excess of up to 25% more snaps recorded during the day in the mid-winter. Diurnal variability in sound pressure levels is largest in the mid-winter, when the overall rate of snapping is at its lowest, and the percentage difference between daytime and nighttime activity is at its highest. This work highlights our lack of knowledge regarding the ecology and acoustic behavior of one of the most dominant soniforous invertebrate species in coastal systems. It also underscores the necessity of long-duration, high-temporal-resolution sampling in efforts to understand the bioacoustics of animal
Freeman, Simon Eric
Sound is the most efficient radiation in the ocean. Sounds of seismic and biological origin contain information regarding the underlying processes that created them. A single hydrophone records summary time-frequency information from the volume within acoustic range. Beamforming using a hydrophone array additionally produces azimuthal estimates of sound sources. A two-dimensional array and acoustic focusing produce an unambiguous two-dimensional `image' of sources. This dissertation describes the application of these techniques in three cases. The first utilizes hydrophone arrays to investigate T-phases (water-borne seismic waves) in the Philippine Sea. Ninety T-phases were recorded over a 12-day period, implying a greater number of seismic events occur than are detected by terrestrial seismic monitoring in the region. Observation of an azimuthally migrating T-phase suggests that reverberation of such sounds from bathymetric features can occur over megameter scales. In the second case, single hydrophone recordings from coral reefs in the Line Islands archipelago reveal that local ambient reef sound is spectrally similar to sounds produced by small, hard-shelled benthic invertebrates in captivity. Time-lapse photography of the reef reveals an increase in benthic invertebrate activity at sundown, consistent with an increase in sound level. The dominant acoustic phenomenon on these reefs may thus originate from the interaction between a large number of small invertebrates and the substrate. Such sounds could be used to take census of hard-shelled benthic invertebrates that are otherwise extremely difficult to survey. A two-dimensional `map' of sound production over a coral reef in the Hawaiian Islands was obtained using two-dimensional hydrophone array in the third case. Heterogeneously distributed bio-acoustic sources were generally co-located with rocky reef areas. Acoustically dominant snapping shrimp were largely restricted to one location within the area surveyed
Riccobene, Giorgio; Favali, Paolo; Andrè, Michel; Chierici, Francesco; Pavan, Gianni; Esonet Lido Demonstration Mission Team
Off East Sicily (at 2100 m depth, 25 km off the harbour of Catania) a prototype of a cabled deep-sea observatory (NEMO-SN1) was set up and has been operational in real-time since 2005 (the cabled deep-sea multi-parameter station SN1, equipped with geophysical and environmental sensors and the cabled NEMO-OνDE, equipped with 4 broadband hydrophones). The Western Ionian Sea is one of the node sites for the upcoming European permanent underwater network (EMSO). Within the activities of the EC project ESONET-NoE some demonstration missions have been funded. The LIDO-DM (Listening to the Deep Ocean-Demonstration Mission) is one of these and is related to two sites, East Sicily and Iberian Margin (Gulf of Cadiz), the main aims being geo-hazards monitoring and warning (seismic, tsunami, and volcanic) and bio-acoustics. The LIDO-DM East Sicily installation represents a further major step within ESONET-NoE, resulting in a fully integrated system for multidisciplinary deep-sea science, capable to transmit and distribute data in real time to the scientific community and to the general public. LIDO-DM East Sicily hosts a large number of sensors aimed at monitoring and studying oceanographic and environmental parameters (by means of CTD, ADCP, 3-C single point current meter, turbidity meter), geophysical phenomena (low frequency hydrophones, accelerometer, gravity meter, vector and scalar magnetometers, seismometer, absolute and differential pressure gauges), ocean noise monitoring and identification and tracking of biological acoustic sources in deep sea. The latter will be performed using two tetrahedral arrays of 4 hydrophones, located at a relative distance of about 5 km, and at about 25 km from the shore. The whole system will be connected and powered from shore, by means of the electro-optical cable net installed at the East Sicily Site Infrastructure, and synchronised with GPS. Sensors data sampling is performed underwater and transmitted via optical fibre link, with
Full Text Available Concepts of innateness were at the heart of Darwin's approach to behavior and central to the ethological theorizing of Lorenz and, at least to start with, of Tinbergen. Then Tinbergen did an about face, and for some twenty years the term 'innate' became highly suspect. He attributed the change to Lehrman's famous 1953 critique in which he asserted that classifying behaviors as innate tells us nothing about how they develop. Although Lehrman made many valid points, I will argue that this exchange also led to profound misunderstandings that were ultimately damaging to progress in research on the development of behavior. The concept of 'instincts to learn', receiving renewed support from current theorizing among geneticists about phenotypic plasticity, provides a potential resolution of some of the controversies that Lehrman created. Bioacoustical studies, particularly on song learning in birds, serve both to confirm some of Lehrman's anxieties about the term 'innate', but also to make a case that he threw out the genetic baby with the bathwater. The breathtaking progress in molecular and developmental genetics has prepared the way for a fuller understanding of the complexities underlying even the simplest notions of innate behavior, necessary before we can begin to comprehend the ontogeny of behavior.O conceito de inato estava no cerne da abordagem de Darwin ao comportamento assim como no das teorias etológicas de Lorenz e, pelo menos inicialmente, de Tinbergen. Depois, Tinbergen deu uma reviravolta e, durante mais ou menos vinte anos, o termo ''inato'' tornou-se altamente suspeito. Tinbergen atribuiu sua mudança à famosa crítica de Lehrman, em 1953, segundo a qual classificar comportamentos como inatos não traz informação alguma a respeito de seu desenvolvimento. Embora muitas das críticas de Lehrman sejam relevantes, tentarei mostrar que a mudança de enfoque também gerou sérios equívocos que acabaram prejudicando o progresso da
Monacchi, David; Valentini, Laura
. File morphology is one of the main distinctive element in sound emission strategies of insect species. We compared analyses of the microstructures of different species' files (both shape and height of teeth, regularity, distance, etc.) and then confirmed their main characteristics within the acoustic domain. Specific Fourier transforms were employed to derive detailed spectrograms analyses providing a powerful visual tool for understanding. For the three species in this study, the typical stridulation of male individuals were isolated and recorded in high definition (96khz and 192khz / 24bit). These high sampling rates enabled to enter the microcosm of sound - in analogy to the microcosm of morphology - through processes of time and frequency shifting. Different sound design methodologies, then, allowed to compose an imaginary soundscape where the sonic gestures of each individual (or more grouped recordings) were superimposed in a polyphony of rhythms and pitches. The purpose for crossing bioacoustics, electron microscopy and music in this interdisciplinary work is driven by a pressing need of awareness of the sonic heritage of landscapes and its conservation.