Enhancing thermal reliability of fiber-optic sensors for bio-inspired applications at ultra-high temperatures

Science.gov (United States)

Kang, Donghoon; Kim, Heon-Young; Kim, Dae-Hyun

2014-07-01

The rapid growth of bio-(inspired) sensors has led to an improvement in modern healthcare and human-robot systems in recent years. Higher levels of reliability and better flexibility, essential features of these sensors, are very much required in many application fields (e.g. applications at ultra-high temperatures). Fiber-optic sensors, and fiber Bragg grating (FBG) sensors in particular, are being widely studied as suitable sensors for improved structural health monitoring (SHM) due to their many merits. To enhance the thermal reliability of FBG sensors, thermal sensitivity, generally expressed as αf + ξf and considered a constant, should be investigated more precisely. For this purpose, the governing equation of FBG sensors is modified using differential derivatives between the wavelength shift and the temperature change in this study. Through a thermal test ranging from RT to 900 °C, the thermal sensitivity of FBG sensors is successfully examined and this guarantees thermal reliability of FBG sensors at ultra-high temperatures. In detail, αf + ξf has a non-linear dependence on temperature and varies from 6.0 × 10-6 °C-1 (20 °C) to 10.6 × 10-6 °C-1 (650 °C). Also, FBGs should be carefully used for applications at ultra-high temperatures due to signal disappearance near 900 °C.

BIO-OPTICAL CHARACTERIZATION OF THE DINOFLAGELLATE GYMNODINIUM BREVE AND THE DIATOM THALASSIOSIRA WEISSFLOGII IN OUTDOOR TANKS

Science.gov (United States)

The bio-optical signatures of harmful algal blooms can be used to define ocean color satellite algorithms. We characterized the bio-optical properties of nutrient-replete cultures of the red tide dinoflagellate Gymnodinium breve and the diatom Thalassiosira weissflogii. We cultur...

Bio-optical properties of Porsnagerfjorden (Norway) waters based on data collected in 2014 and 2015

Science.gov (United States)

Białogrodzka, Jagoda; Stramska, Małgorzata; Burska, Dorota; Ficek, Dariusz; Stoń-Egiert, Joanna; Winogradow, Aleksandra

2016-04-01

Oceanographic data collected in the Arctic are valuable in view of the role of this region in the studies on global climate change and the fact that historically the number of in situ measurements is relatively low. Porsangerfjorden, Norway, is an example of oceanic basin with case 2 water according to the optical classification. Optical data from coastal seas are difficult in interpretation because the concentrations of optically important components can be high, variable, and not covarying with each other. Porsanger Fjord can be divided into three basins: inner, middle and outer, where physical and bio-optical properties of water masses differ. We collected optical data and water samples for phytoplankton pigments, dissolved organic matter, particulate (POC) and dissolved (DOC) organic carbon, and particulate inorganic carbon (PIC) during our two summer expeditions in 2014 and 2015. In this presentation we focus on data collected with WETLabs' ac-9 and ac-s spectrophotometers and ECO-Triplet and ECO-Triplet-w fluorometers. Concurrently with in situ optical measurements water samples were collected in situ and soon afterwards they were filtered in the laboratory at the station, stored and transported for further processing in Poland. Our analysis includes 146 of in situ measurements and discrete water samples: 62 of POC, 52 of PIC, 33 of DOC, 68 of dissolved organic matter and 89 of phytoplankton pigments. During our analysis we compare chlorophyll (Chl_a), dissolved organic matter (CDOM) and carbon concentrations with in situ collected inherent optical properties of sea water to find empirical proxies allowing to estimate various water component concentrations from optical data. Application of these proxies to available bio-optical data allowed us to derive spatial distribution of these water constituents and their variability. This work was funded by the Norway Grants (NCBR contract No. 201985, project NORDFLUX).

Animal Botulism Outcomes in the AniBioThreat Project

DEFF Research Database (Denmark)

Woudstra, Cédric; Tevell Åberg, Annica; Skarin, Hanna

2013-01-01

and botulinum neurotoxins are considered potential weapons for bioterrorism and have been included in the Australia Group List of Biological Agents. In 2010 the European Commission (DG Justice, Freedom and Security) funded a 3-year project named AniBioThreat to improve the EU's capacity to counter animal...... new genetic information to better understand the diversity of these Clostridia and develop detection methods targeting both highly specific genetic markers of these Clostridia and the neurotoxins they are able to produce. Several European institutes participating in the AniBioThreat project...

Steady-State Linear and Non-linear Optical Spectroscopy of Organic Chromophores and Bio-macromolecules.

Science.gov (United States)

Marazzi, Marco; Gattuso, Hugo; Monari, Antonio; Assfeld, Xavier

2018-01-01

Bio-macromolecules as DNA, lipid membranes and (poly)peptides are essential compounds at the core of biological systems. The development of techniques and methodologies for their characterization is therefore necessary and of utmost interest, even though difficulties can be experienced due to their intrinsic complex nature. Among these methods, spectroscopies, relying on optical properties are especially important to determine their macromolecular structures and behaviors, as well as the possible interactions and reactivity with external dyes-often drugs or pollutants-that can (photo)sensitize the bio-macromolecule leading to eventual chemical modifications, thus damages. In this review, we will focus on the theoretical simulation of electronic spectroscopies of bio-macromolecules, considering their secondary structure and including their interaction with different kind of (photo)sensitizers. Namely, absorption, emission and electronic circular dichroism (CD) spectra are calculated and compared with the available experimental data. Non-linear properties will be also taken into account by two-photon absorption, a highly promising technique (i) to enhance absorption in the red and infra-red windows and (ii) to enhance spatial resolution. Methodologically, the implications of using implicit and explicit solvent, coupled to quantum and thermal samplings of the phase space, will be addressed. Especially, hybrid quantum mechanics/molecular mechanics (QM/MM) methods are explored for a comparison with solely QM methods, in order to address the necessity to consider an accurate description of environmental effects on spectroscopic properties of biological systems.

Steady-State Linear and Non-linear Optical Spectroscopy of Organic Chromophores and Bio-macromolecules

Directory of Open Access Journals (Sweden)

Marco Marazzi

2018-04-01

Full Text Available Bio-macromolecules as DNA, lipid membranes and (polypeptides are essential compounds at the core of biological systems. The development of techniques and methodologies for their characterization is therefore necessary and of utmost interest, even though difficulties can be experienced due to their intrinsic complex nature. Among these methods, spectroscopies, relying on optical properties are especially important to determine their macromolecular structures and behaviors, as well as the possible interactions and reactivity with external dyes—often drugs or pollutants—that can (photosensitize the bio-macromolecule leading to eventual chemical modifications, thus damages. In this review, we will focus on the theoretical simulation of electronic spectroscopies of bio-macromolecules, considering their secondary structure and including their interaction with different kind of (photosensitizers. Namely, absorption, emission and electronic circular dichroism (CD spectra are calculated and compared with the available experimental data. Non-linear properties will be also taken into account by two-photon absorption, a highly promising technique (i to enhance absorption in the red and infra-red windows and (ii to enhance spatial resolution. Methodologically, the implications of using implicit and explicit solvent, coupled to quantum and thermal samplings of the phase space, will be addressed. Especially, hybrid quantum mechanics/molecular mechanics (QM/MM methods are explored for a comparison with solely QM methods, in order to address the necessity to consider an accurate description of environmental effects on spectroscopic properties of biological systems.

Steady-State Linear and Non-linear Optical Spectroscopy of Organic Chromophores and Bio-macromolecules

Science.gov (United States)

Marazzi, Marco; Gattuso, Hugo; Monari, Antonio; Assfeld, Xavier

2018-04-01

Bio-macromolecules as DNA, lipid membranes and (poly)peptides are essential compounds at the core of biological systems. The development of techniques and methodologies for their characterization is therefore necessary and of utmost interest, even though difficulties can be experienced due to their intrinsic complex nature. Among these methods, spectroscopies, relying on optical properties are especially important to determine their macromolecular structures and behaviors, as well as the possible interactions and reactivity with external dyes – often drugs or pollutants – that can (photo)sensitize the bio-macromolecule leading to eventual chemical modifications, thus damages. In this review, we will focus on the theoretical simulation of electronic spectroscopies of bio-macromolecules, considering their secondary structure and including their interaction with different kind of (photo)sensitizers. Namely, absorption, emission and electronic circular dichroism (CD) spectra are calculated and compared with the available experimental data. Non-linear properties will be also taken into account by two-photon absorption, a highly promising technique (i) to enhance absorption in the red and infra-red windows and (ii) to enhance spatial resolution. Methodologically, the implications of using implicit and explicit solvent, coupled to quantum and thermal samplings of the phase space, will be addressed. Especially, hybrid quantum mechanics/ molecular mechanics (QM/MM) methods are explored for a comparison with solely QM methods, in order to address the necessity to consider an accurate description of environmental effects on spectroscopic properties of biological systems.

Enhancing thermal reliability of fiber-optic sensors for bio-inspired applications at ultra-high temperatures

International Nuclear Information System (INIS)

Kang, Donghoon; Kim, Heon-Young; Kim, Dae-Hyun

2014-01-01

The rapid growth of bio-(inspired) sensors has led to an improvement in modern healthcare and human–robot systems in recent years. Higher levels of reliability and better flexibility, essential features of these sensors, are very much required in many application fields (e.g. applications at ultra-high temperatures). Fiber-optic sensors, and fiber Bragg grating (FBG) sensors in particular, are being widely studied as suitable sensors for improved structural health monitoring (SHM) due to their many merits. To enhance the thermal reliability of FBG sensors, thermal sensitivity, generally expressed as α f + ξ f and considered a constant, should be investigated more precisely. For this purpose, the governing equation of FBG sensors is modified using differential derivatives between the wavelength shift and the temperature change in this study. Through a thermal test ranging from RT to 900 °C, the thermal sensitivity of FBG sensors is successfully examined and this guarantees thermal reliability of FBG sensors at ultra-high temperatures. In detail, α f + ξ f has a non-linear dependence on temperature and varies from 6.0 × 10 −6  °C −1 (20 °C) to 10.6 × 10 −6  °C −1 (650 °C). Also, FBGs should be carefully used for applications at ultra-high temperatures due to signal disappearance near 900 °C. (paper)

Refuse derived soluble bio-organics enhancing tomato plant growth and productivity

Energy Technology Data Exchange (ETDEWEB)

Sortino, Orazio [Dipartimento di Scienze Agronomiche Agrochimiche e delle Produzioni Animali, Universita degli Studi di Catania, Via Valdisavoia 5, 95123 Catania (Italy); Dipasquale, Mauro [Dipartimento di Chimica, Universita di Torino, Via P. Giuria 7, 10125 Torino (Italy); Montoneri, Enzo, E-mail: enzo.montoneri@unito.it [Dipartimento di Chimica, Universita di Torino, Via P. Giuria 7, 10125 Torino (Italy); Tomasso, Lorenzo; Perrone, Daniele G. [Dipartimento di Chimica, Universita di Torino, Via P. Giuria 7, 10125 Torino (Italy); Vindrola, Daniela; Negre, Michele; Piccone, Giuseppe [Dipartimento di Valorizzazione e Protezione delle Risorse Agroforestali, Universita di Torino, Via L. da Vinci 44, 10095 Grugliasco (Italy)

2012-10-15

Highlights: Black-Right-Pointing-Pointer Municipal bio-wastes are a sustainable source of bio-based products. Black-Right-Pointing-Pointer Refuse derived soluble bio-organics promote chlorophyll synthesis. Black-Right-Pointing-Pointer Refuse derived soluble bio-organics enhance plant growth and fruit ripening rate. Black-Right-Pointing-Pointer Sustainable chemistry exploiting urban refuse allows sustainable development. Black-Right-Pointing-Pointer Chemistry, agriculture and the environment benefit from biowaste technology. - Abstract: Municipal bio-refuse (CVD), containing kitchen wastes, home gardening residues and public park trimmings, was treated with alkali to yield a soluble bio-organic fraction (SBO) and an insoluble residue. These materials were characterized using elemental analysis, potentiometric titration, and 13C NMR spectroscopy, and then applied as organic fertilizers to soil for tomato greenhouse cultivation. Their performance was compared with a commercial product obtained from animal residues. Plant growth, fruit yield and quality, and soil and leaf chemical composition were the selected performance indicators. The SBO exhibited the best performance by enhancing leaf chlorophyll content, improving plant growth and fruit ripening rate and yield. No product performance-chemical composition relationship could be assessed. Solubility could be one reason for the superior performance of SBO as a tomato growth promoter. The enhancement of leaf chlorophyll content is discussed to identify a possible link with the SBO photosensitizing properties that have been demonstrated in other work, and thus with photosynthetic performance.

Refuse derived soluble bio-organics enhancing tomato plant growth and productivity

International Nuclear Information System (INIS)

Sortino, Orazio; Dipasquale, Mauro; Montoneri, Enzo; Tomasso, Lorenzo; Perrone, Daniele G.; Vindrola, Daniela; Negre, Michele; Piccone, Giuseppe

2012-01-01

Highlights: ► Municipal bio-wastes are a sustainable source of bio-based products. ► Refuse derived soluble bio-organics promote chlorophyll synthesis. ► Refuse derived soluble bio-organics enhance plant growth and fruit ripening rate. ► Sustainable chemistry exploiting urban refuse allows sustainable development. ► Chemistry, agriculture and the environment benefit from biowaste technology. - Abstract: Municipal bio-refuse (CVD), containing kitchen wastes, home gardening residues and public park trimmings, was treated with alkali to yield a soluble bio-organic fraction (SBO) and an insoluble residue. These materials were characterized using elemental analysis, potentiometric titration, and 13C NMR spectroscopy, and then applied as organic fertilizers to soil for tomato greenhouse cultivation. Their performance was compared with a commercial product obtained from animal residues. Plant growth, fruit yield and quality, and soil and leaf chemical composition were the selected performance indicators. The SBO exhibited the best performance by enhancing leaf chlorophyll content, improving plant growth and fruit ripening rate and yield. No product performance-chemical composition relationship could be assessed. Solubility could be one reason for the superior performance of SBO as a tomato growth promoter. The enhancement of leaf chlorophyll content is discussed to identify a possible link with the SBO photosensitizing properties that have been demonstrated in other work, and thus with photosynthetic performance.

Utilizing social media for informal ocean conservation and education: The BioOceanography Project

Science.gov (United States)

Payette, J.

2016-02-01

Science communication through the use of social media is a rapidly evolving and growing pursuit in academic and scientific circles. Online tools and social media are being used in not only scientific communication but also scientific publication, education, and outreach. Standards and usage of social media as well as other online tools for communication, networking, outreach, and publication are always in development. Caution and a conservative attitude towards these novel "Science 2.0" tools is understandable because of their rapidly changing nature and the lack of professional standards for using them. However there are some key benefits and unique ways social media, online systems, and other Open or Open Source technologies, software, and "Science 2.0" tools can be utilized for academic purposes such as education and outreach. Diverse efforts for ocean conservation and education will continue to utilize social media for a variety of purposes. The BioOceanography project is an informal communication, education, outreach, and conservation initiative created for enhancing knowledge related to Oceanography and Marine Science with an unbiased yet conservation-minded approach and in an Open Source format. The BioOceanography project is ongoing and still evolving, but has already contributed to ocean education and conservation communication in key ways through a concerted web presence since 2013, including a curated Twitter account @_Oceanography and BioOceanography blog style website. Social media tools like those used in this project, if used properly can be highly effective and valuable for encouraging students, networking with researchers, and educating the general public in Oceanography.

Projections for the Production of Bulk Volume Bio-Based Polymers in Europe and Environmental Implications

NARCIS (Netherlands)

Patel, M.K.; Crank, M.

2007-01-01

In this paper we provide an overview of the most important emerging groups of bio-based polymers for bulk volume applications and we discuss market projections for these types of bio-based polymers in the EU, thereby distinguishing between three scenarios. Bio-based polymers are projected to reach a

Determination of optical properties of tissue and other bio-materials

CSIR Research Space (South Africa)

Singh, A

2008-11-01

Full Text Available appears less diffusively scattered. Determination of optical properties of tissue and other bio-materials A SINGH, AE KARSTEN, JS DAM CSIR National Laser Centre, Biophotonics Group PO Box 395, Pretoria, 0001, South Africa Email: ASingh1@csir.co.za K...

SeaBASS Bio-optical and pigment data collected from 1979-08-22 to 2011-12-14 (NCEI Accession 0086308)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This accession contains SeaWiFS Bio-optical Archive and Storage System (SeaBASS) bio-optical, pigment, and other data collected from 1979-08-22 to 2011-12-14....

Bio-inspired polymeric patterns with enhanced wear durability for microsystem applications

International Nuclear Information System (INIS)

Singh, R. Arvind; Siyuan, L.; Satyanarayana, N.; Kustandi, T.S.; Sinha, Sujeet K.

2011-01-01

At micro/nano-scale, friction force dominates at the interface between bodies moving in relative motion and severely affects their smooth operation. This effect limits the performance of microsystem devices such as micro-electro-mechanical systems (MEMS). In addition, friction force also leads to material removal or wear and thereby reduces the durability i.e. the useful operating life of the devices. In this work, we fabricated bio-inspired polymeric patterns for tribological applications. Inspired by the surface features on lotus leaves namely, the protuberances and wax, SU-8 polymeric films spin-coated on silicon wafers were topographically and chemically modified. For topographical modification, micro-scale patterns were fabricated using nanoimprint lithography and for chemical modification, the micro-patterns were coated with perfluoropolyether nanolubricant. Tribological investigation of the bio-inspired patterns revealed that the friction coefficients reduced significantly and the wear durability increased by several orders. In order to enhance the wear durability much further, the micro-patterns were exposed to argon/oxygen plasma and were subsequently coated with the perfluoropolyether nanolubricant. Bio-inspired patterns with enhanced wear durability, such as the ones investigated in the current work, have potential tribological applications in MEMS/Bio-MEMS actuator-based devices. Highlights: →Bio-inspired polymeric patterns for tribological applications in microsystems. →Novel surface modification for the patterns to enhance tribological properties. →Patterns show low friction properties and extremely high wear durability.

Optical assembly of bio-hybrid micro-robots.

Science.gov (United States)

Barroso, Álvaro; Landwerth, Shirin; Woerdemann, Mike; Alpmann, Christina; Buscher, Tim; Becker, Maike; Studer, Armido; Denz, Cornelia

2015-04-01

The combination of micro synthetic structures with bacterial flagella motors represents an actual trend for the construction of self-propelled micro-robots. The development of methods for fabrication of these bacteria-based robots is a first crucial step towards the realization of functional miniature and autonomous moving robots. We present a novel scheme based on optical trapping to fabricate living micro-robots. By using holographic optical tweezers that allow three-dimensional manipulation in real time, we are able to arrange the building blocks that constitute the micro-robot in a defined way. We demonstrate exemplarily that our method enables the controlled assembly of living micro-robots consisting of a rod-shaped prokaryotic bacterium and a single elongated zeolite L crystal, which are used as model of the biological and abiotic components, respectively. We present different proof-of-principle approaches for the site-selective attachment of the bacteria on the particle surface. The propulsion of the optically assembled micro-robot demonstrates the potential of the proposed method as a powerful strategy for the fabrication of bio-hybrid micro-robots.

Amphiphilic Bio-molecules/ZnO Interface: Enhancement of Bio-affinity and Dispersibility

International Nuclear Information System (INIS)

Meng Xiu-Qing; Fang Yun-Zhang; Wu Feng-Min

2012-01-01

The dispersibility of bio-molecules such as lecithins on the surface of ZnO nanowires are investigated for biosensor applications. Lecithins can be absorbed on an as-synthesized ZnO nanowire surface in the form of sub-micro sized clusters, while scattering well on those annealed under oxygen atmosphere. Wettability analysis reveals that the as-synthesized ZnO nanowires bear a super-hydrophobic surface, which convents to superhydrophilic after oxygen annealing. First-principles calculations indicate that the adsorption energy of ZnO with water is about 0.2 eV at a distance of 2 Å when it is superhydrophilic, suggesting that lecithin can be absorbed on the hydrophilic surface stably at this distance and the bio-affinity can be enhanced under this condition. (condensed matter: structure, mechanical and thermal properties)

Vibro-Perception of Optical Bio-Inspired Fiber-Skin.

Science.gov (United States)

Li, Tao; Zhang, Sheng; Lu, Guo-Wei; Sunami, Yuta

2018-05-12

In this research, based on the principle of optical interferometry, the Mach-Zehnder and Optical Phase-locked Loop (OPLL) vibro-perception systems of bio-inspired fiber-skin are designed to mimic the tactile perception of human skin. The fiber-skin is made of the optical fiber embedded in the silicone elastomer. The optical fiber is an instinctive and alternative sensor for tactile perception with high sensitivity and reliability, also low cost and susceptibility to the magnetic interference. The silicone elastomer serves as a substrate with high flexibility and biocompatibility, and the optical fiber core serves as the vibro-perception sensor to detect physical motions like tapping and sliding. According to the experimental results, the designed optical fiber-skin demonstrates the ability to detect the physical motions like tapping and sliding in both the Mach-Zehnder and OPLL vibro-perception systems. For direct contact condition, the OPLL vibro-perception system shows better performance compared with the Mach-Zehnder vibro-perception system. However, the Mach-Zehnder vibro-perception system is preferable to the OPLL system in the indirect contact experiment. In summary, the fiber-skin is validated to have light touch character and excellent repeatability, which is highly-suitable for skin-mimic sensing.

3D visualization of the initial Yersinia ruckeri infection route in rainbow trout (Oncorhynchus mykiss) by optical projection tomography

DEFF Research Database (Denmark)

Otani, Maki; Villumsen, Kasper Rømer; Kragelund Strøm, Helene

2014-01-01

, optical projection tomography (OPT), a novel three-dimensional (3D) bio-imaging technique, was applied. OPT not only enables the visualization of Y. ruckeri on mucosal surfaces but also the 3D spatial distribution in whole organs, without sectioning. Rainbow trout were infected by bath challenge exposure...

Bio-Optics and Bio-Inspired Optical Materials.

Science.gov (United States)

Tadepalli, Sirimuvva; Slocik, Joseph M; Gupta, Maneesh K; Naik, Rajesh R; Singamaneni, Srikanth

2017-10-25

Through the use of the limited materials palette, optimally designed micro- and nanostructures, and tightly regulated processes, nature demonstrates exquisite control of light-matter interactions at various length scales. In fact, control of light-matter interactions is an important element in the evolutionary arms race and has led to highly engineered optical materials and systems. In this review, we present a detailed summary of various optical effects found in nature with a particular emphasis on the materials and optical design aspects responsible for their optical functionality. Using several representative examples, we discuss various optical phenomena, including absorption and transparency, diffraction, interference, reflection and antireflection, scattering, light harvesting, wave guiding and lensing, camouflage, and bioluminescence, that are responsible for the unique optical properties of materials and structures found in nature and biology. Great strides in understanding the design principles adapted by nature have led to a tremendous progress in realizing biomimetic and bioinspired optical materials and photonic devices. We discuss the various micro- and nanofabrication techniques that have been employed for realizing advanced biomimetic optical structures.

On the relationship between satellite-estimated bio-optical and thermal properties in the Gulf of Mexico

Science.gov (United States)

Jolliff, Jason K.; Kindle, John C.; Penta, Bradley; Helber, Robert; Lee, Zhongping; Shulman, Igor; Arnone, Robert; Rowley, Clark D.

2008-03-01

Three years of Sea-viewing Wide Field-of-view Sensor (SeaWiFS) ocean color data were combined with three-dimensional thermal fields generated by the U.S. Navy's Modular Ocean Data Assimilation System (MODAS) in order to examine the interdependencies between bio-optical fields and their relationship to seasonal and mesoscale changes in upper ocean thermal structure. The combined data set suggests that the oceanic boundary layer within the Gulf of Mexico may be broadly defined by two seasonally occurring bio-thermal periods. A winter mixing period, characterized by net heat losses to the atmosphere, deepening of the isothermal layer depth, and annual maxima of satellite-estimated colored detrital matter (CDM) absorption coefficients and surface pigment concentration, was followed by a thermally stratified period characterized by net surface ocean heating, reduced isothermal layer depths, and annual minima in surface bio-optical fields. Variability in the interdependencies of ocean color products was used to diagnose an attendant shift in the size-structure of surface phytoplankton communities as well as identify CDM as the constituent responsible for the majority of blue-light absorption in Gulf of Mexico surface waters. The mesoscale circulation, as resolved by MODAS thermal fields into cold and warm-core eddies, appears to significantly modulate the seasonal bio-optical cycle of CDM absorption and surface pigment concentration. An empirical model was developed to describe CDM absorption as a function of upper ocean thermal energy. The model accounted for nearly half the variance in the satellite-estimate of this bio-optical variable. Large mismatches between the model and satellite data implied episodes of shelf water export to the deep Gulf of Mexico.

Bio-optical water quality dynamics observed from MERIS in Pensacola Bay, Florida

Science.gov (United States)

Observed bio-optical water quality data collected from 2009 to 2011 in Pensacola Bay, Florida were used to develop empirical remote sensing retrieval algorithms for chlorophyll a (Chla), colored dissolved organic matter (CDOM), and suspended particulate matter (SPM). Time-series ...

Bio-optical profiling floats as new observational tools for biogeochemical and ecosystem studies: Potential synergies with ocean color remote sensing

Energy Technology Data Exchange (ETDEWEB)

Claustre, H.; Bishop, J.; Boss, E.; Bernard, S.; Berthon, J.-F.; Coatanoan, C.; Johnson, K.; Lotiker, A.; Ulloa, O.; Perry, M.J.; D' Ortenzio, F.; D' andon, O.H.F.; Uitz, J.

2009-10-01

Profiling floats now represent a mature technology. In parallel with their emergence, the field of miniature, low power bio-optical and biogeochemical sensors is rapidly evolving. Over recent years, the bio-geochemical and bio-optical community has begun to benefit from the increase in observational capacities by developing profiling floats that allow the measurement of key biooptical variables and subsequent products of biogeochemical and ecosystem relevance like Chlorophyll a (Chla), optical backscattering or attenuation coefficients which are proxies of Particulate Organic Carbon (POC), Colored Dissolved Organic Matter (CDOM). Thanks to recent algorithmic improvements, new bio-optical variables such as backscattering coefficient or absorption by CDOM, at present can also be extracted from space observations of ocean color. In the future, an intensification of in situ measurements by bio-optical profiling floats would permit the elaboration of unique 3D/4D bio-optical climatologies, linking surface (remotely detected) properties to their vertical distribution (measured by autonomous platforms), with which key questions in the role of the ocean in climate could be addressed. In this context, the objective of the IOCCG (International Ocean Color Coordinating Group) BIO-Argo working group is to elaborate recommendations in view of a future use of bio-optical profiling floats as part of a network that would include a global array that could be 'Argo-relevant', and specific arrays that would have more focused objectives or regional targets. The overall network, realizing true multi-scale sustained observations of global marine biogeochemistry and biooptics, should satisfy the requirements for validation of ocean color remote sensing as well as the needs of a wider community investigating the impact of global change on biogeochemical cycles and ecosystems. Regarding the global profiling float array, the recommendation is that Chla as well as POC should be the

Wood to Bio-Methane demonstration project in the Netherlands

Energy Technology Data Exchange (ETDEWEB)

Van der Meijden, C.M.; Van der Drift, A.; Rietveld, G. [ECN Biomass and Energy Efficiency, Petten (Netherlands); Koenemann, J.W. [Dahlman Renewable Technology, P.O. Box 438, 3140 AK Maassluis (Netherlands); Sierhuis, W. [HVCgroup, P.O. Box 9199, 1800 GD, Alkmaar (Netherlands)

2013-06-15

The Energy research Centre of the Netherlands (ECN) has developed a biomass gasification technology, called the MILENA technology. The Milena gasification technology has a high cold gas efficiency and high methane yield, making it very suitable for gas engine and turbine applications as well as upgrading of the gas into Bio-Methane. An overall efficiency from biomass to power of over 30% is possible, whereas 70% efficiency is achievable from biomass to gas grid quality methane. HVC Group (situated in Alkmaar, North Holland) is a modern public service waste company. HVC converts waste streams which cannot be recycled into usable forms of energy. HVC has a 75 MWth waste wood boiler in operation which produces heat and electricity, and an anaerobic digester which converts domestic fruit, vegetable and garden waste into Bio-Methane. HVC expects an important role for Bio-Methane in the future and HVC has decided to join ECN with the development, demonstration and implementation of the MILENA Bio-Methane technology. Linked to the Bio-Methane demonstration project is the Netherlands Expertise Centre for Biomass Gasification. The MILENA demonstration project and the Gasification Expert Centre are supported by the following companies and organizations: HVC, TAQA, Gasunie, Dahlman, province of North Holland, the Alkmaar municipality and ECN. In 2010 and 2012 extensive lab-scale and pilot scale tests have been executed by ECN and HVC to proof that the gasification and gas cleaning technology is ready for commercial application. The final step in this test program was a duration test in the 800 kWth MILENA pilot plant coupled to the OLGA tar removal unit. The goal was to show high availability. The result of the test was an availability of the gasifier of 96% and an overall availability (including gas cooling and gas cleaning) of 85%. The results of the duration tests convinced HVC and the other partners that the technology is ready for scale-up. The results produced in the

Primary production calculations for sea ice from bio-optical observations in the Baltic Sea

Directory of Open Access Journals (Sweden)

Susann Müller

2016-09-01

Full Text Available Abstract Bio-optics is a powerful approach for estimating photosynthesis rates, but has seldom been applied to sea ice, where measuring photosynthesis is a challenge. We measured absorption coefficients of chromophoric dissolved organic matter (CDOM, algae, and non-algal particles along with solar radiation, albedo and transmittance at four sea-ice stations in the Gulf of Finland, Baltic Sea. This unique compilation of optical and biological data for Baltic Sea ice was used to build a radiative transfer model describing the light field and the light absorption by algae in 1-cm increments. The maximum quantum yields and photoadaptation of photosynthesis were determined from 14C-incorporation in photosynthetic-irradiance experiments using melted ice. The quantum yields were applied to the radiative transfer model estimating the rate of photosynthesis based on incident solar irradiance measured at 1-min intervals. The calculated depth-integrated mean primary production was 5 mg C m–2 d–1 for the surface layer (0–20 cm ice depth at Station 3 (fast ice and 0.5 mg C m–2 d–1 for the bottom layer (20–57 cm ice depth. Additional calculations were performed for typical sea ice in the area in March using all ice types and a typical light spectrum, resulting in depth-integrated mean primary production rates of 34 and 5.6 mg C m–2 d–1 in surface ice and bottom ice, respectively. These calculated rates were compared to rates determined from 14C incorporation experiments with melted ice incubated in situ. The rate of the calculated photosynthesis and the rates measured in situ at Station 3 were lower than those calculated by the bio-optical algorithm for typical conditions in March in the Gulf of Finland by the bio-optical algorithm. Nevertheless, our study shows the applicability of bio-optics for estimating the photosynthesis of sea-ice algae.

The BioREGIO Carpathians project: aims, methodology and results from the “Continuity and Connectivity” analysis

Directory of Open Access Journals (Sweden)

Filippo Favilli

2015-07-01

Full Text Available BioREGIO Carpathians is a transnational cooperation project, co-financed under the second call of the EU South East Europe Transnational Cooperation Programme, priority area “Protection and Improvement of the Environment”. BioREGIO Carpathians run for three years (2011–2013 and is a flagship project for the Carpathian Convention (article four dealing with landscape and biological diversity, its Biodiversity Protocol and the Biodiversity Working Group. The project is built on the conservation, restoration and valorisation of the Carpathians ecological continuum to enable large herbivores and carnivores to live in coexistence with modern society. The Carpathian countries are expecting a massive pressure to modernize and extend their road infrastructures. If not considering the requirements of ecological network, this run-to-development will enhance landscape fragmentation, limit dispersal and genetic exchange of wildlife species. BioREGIO applied a multi-disciplinary approach (physical, legal and socio-economic in order to identify the most influencing barriers regarding connectivity throughout the Carpathians. Using two ArcGIS 10.0 tools in a three-step approach and a series of site visits, the continuity and connectivity analysis identified not only physical barriers but also legal aspects and socio-economic behaviour that are influencing ecological connectivity and playing a major role to conserve wildlife population. The investigation on the ground together with local experts and stakeholders enabled the adaptation of the GIS results and the development of feasible solutions to overcome the detected barriers with recommended priorities for implementing appropriate measurements to maintain connectivity and to sustain large carnivores, herbivores and biodiversity in the Carpathians.

Earth BioGenome Project: Sequencing life for the future of life.

Science.gov (United States)

Lewin, Harris A; Robinson, Gene E; Kress, W John; Baker, William J; Coddington, Jonathan; Crandall, Keith A; Durbin, Richard; Edwards, Scott V; Forest, Félix; Gilbert, M Thomas P; Goldstein, Melissa M; Grigoriev, Igor V; Hackett, Kevin J; Haussler, David; Jarvis, Erich D; Johnson, Warren E; Patrinos, Aristides; Richards, Stephen; Castilla-Rubio, Juan Carlos; van Sluys, Marie-Anne; Soltis, Pamela S; Xu, Xun; Yang, Huanming; Zhang, Guojie

2018-04-24

Increasing our understanding of Earth's biodiversity and responsibly stewarding its resources are among the most crucial scientific and social challenges of the new millennium. These challenges require fundamental new knowledge of the organization, evolution, functions, and interactions among millions of the planet's organisms. Herein, we present a perspective on the Earth BioGenome Project (EBP), a moonshot for biology that aims to sequence, catalog, and characterize the genomes of all of Earth's eukaryotic biodiversity over a period of 10 years. The outcomes of the EBP will inform a broad range of major issues facing humanity, such as the impact of climate change on biodiversity, the conservation of endangered species and ecosystems, and the preservation and enhancement of ecosystem services. We describe hurdles that the project faces, including data-sharing policies that ensure a permanent, freely available resource for future scientific discovery while respecting access and benefit sharing guidelines of the Nagoya Protocol. We also describe scientific and organizational challenges in executing such an ambitious project, and the structure proposed to achieve the project's goals. The far-reaching potential benefits of creating an open digital repository of genomic information for life on Earth can be realized only by a coordinated international effort.

Introducing Magneto-Optical Functions into Soft Materials

Science.gov (United States)

2017-05-03

including organic and bio materials by using magnetic nanomaterials. This final report includes the successful developments of magneto-optical... successful developments of magneto-optical properties in both organic and bio magnetic nanocomposites during the project period of three years...proteins on the photoluminescence of nanodiamond. J. Appl . Phys. 2011, 109 (3), 034704. 7, Xu, H.; Hung, C.E.; Cheng, C.L.; Hu, B., Magneto-electric

Optical design of ultrashort throw liquid crystal on silicon projection system

Science.gov (United States)

Huang, Jiun-Woei

2017-05-01

An ultrashort throw liquid crystal on silicon (LCoS) projector for home cinema, virtual reality, and automobile heads-up display has been designed and fabricated. To achieve the best performance and highest-quality image, this study aimed to design wide-angle projection optics and optimize the illumination for LCoS. Based on the telecentric lens projection system and optimized Koehler illumination, the optical parameters were calculated. The projector's optical system consisted of a conic aspheric mirror and image optics using either symmetric double Gauss or a large-angle eyepiece to achieve a full projection angle larger than 155 deg. By applying Koehler illumination, image resolution was enhanced and the modulation transfer function of the image in high spatial frequency was increased to form a high-quality illuminated image. The partial coherence analysis verified that the design was capable of 2.5 lps/mm within a 2 m×1.5 m projected image. The throw ratio was less than 0.25 in HD format.

pH-dependence of the optical bio-sensor based on DNA-carbon nanotube

International Nuclear Information System (INIS)

Vu Thuy Huong; Quach Kha Quang; Tran Thanh Thuy; Phan Duc Anh; Ngo Van Thanh; Nguyen Ai Viet

2010-01-01

In 2006, Daniel A. Heller et al. [1] demonstrated that carbon nanotubes (CNNTs) wrapped with DNA can be placed inside living cells and detect trace amounts of harmful contaminants using near infrared light. This discovery could lead to new types of optical sensors and biomarkers at the sub cellular level. The working principle of this optical bio-sensor from DNA and CNNTs can be explained by a simple theoretical model which was introduced in [3]. In this paper, the pH-dependence of DNA and the pH-dependence of solution around CNNTs are shown by using data analysis method. By substituting them into the same model, the pH-dependence of DNA-wrapped CNNTs was elicited in this paper. The range of parameters for workable conditions of this bio-sensor was indicated that the solution should have pH from 6 to 9 and the concentration of ions should be more than a critical value. These results are according to the experimental data and the deduction about pH and salt concentration in solution. They are very useful as using such a new bio-sensor like this in living environment. (author)

Bio-optical characterization in an ultra-oligotrophic region: the North central Red Sea

KAUST Repository

Kheireddine, Malika; Jones, Burton

2015-01-01

are derived from the concentration and physical properties of suspended particles in the ocean. They provide a simple description of the influence of these particles on the light within the water column. Bio-optical relationships found for ultra

Korea-China optical technology research centre project

Energy Technology Data Exchange (ETDEWEB)

Kim, Cheol Jung; Lee, J M; Rhee, Y J. and others

2001-09-01

The main objectives of this project are to establish the internatinal collaboration basis of optical technolgies between Korean and China through the combination of the Chinese advanced fundamental technologies with the Korea industrialization and commercialization infrastructures, by ways of exchanging scientist and informations, holding joint seminars, cooperative utilization of research resources. On the ground of this establishment, the optical technologies of Korea are supposed to be leveled up to that of the world-most advanced. At the same time, for the improvement of mutual benefit and financial profit of both of the countries, technical support for the investment on the optical industries in the two countries and establishment of foundation for the venture capitals are also the purpose of this project. Because the state-of-the-arts of the Chinese technologies such as aerospace engineering, military defense technology, applications to medical treatments, laser fusion research, and so on, are known to be far above those of Korean and upto one of the most advanced in the world, it is necessary that the acquisition of these technologies, resulting in the enhancement of the levels of domestic technologies in these fields, implementation of joint research projects for technology development as well as the balanced opportunities for commercial product/sales and cooperation should be actively pursued.

Korea-China Optical Technology Research Centre Project

International Nuclear Information System (INIS)

Kim, Cheol Jung; Rhee, Y. J.; Jung, D. Y. and others

2004-06-01

The main objectives of this project are to establish the international collaboration basis of optical technologies between Korea and China. The combination of the Chinese advanced fundamental technologies with the Korean industrialization and commercialization infrastructures is realized, by ways of exchanging scientists and informations, holding joint seminars, cooperative utilization of research resources. On the ground of this establishment, the optical technologies of Korea are supposed to be leveled up to those of the world-most advanced. At the same time, for the improvement of mutual benefit and financial profit of both countries, providing technical advice and suggestions to the optical industries in the two countries is an another goal of this project. The state-of-the-arts of the Chinese technologies such as aerospace engineering, military defence technology, medical technology, laser fusion research, and so on, are known to be far above those of Korean and up to one of the most advanced in the world. Thus it is thought to be necessary that the acquisition of these technologies, implementation of joint research projects for technology development as well as the balanced opportunities for commercial product/sales and cooperation should be actively pursued in order to enhance the levels of Korean technologies in these fields

Korea-China optical technology research centre project

International Nuclear Information System (INIS)

Kim, Cheol Jung; Lee, J. M.; Rhee, Y. J. and others

2001-09-01

The main objectives of this project are to establish the internatinal collaboration basis of optical technolgies between Korean and China through the combination of the Chinese advanced fundamental technologies with the Korea industrialization and commercialization infrastructures, by ways of exchanging scientist and informations, holding joint seminars, cooperative utilization of research resources. On the ground of this establishment, the optical technologies of Korea are supposed to be leveled up to that of the world-most advanced. At the same time, for the improvement of mutual benefit and financial profit of both of the countries, technical support for the investment on the optical industries in the two countries and establishment of foundation for the venture capitals are also the purpose of this project. Because the state-of-the-arts of the Chinese technologies such as aerospace engineering, military defense technology, applications to medical treatments, laser fusion research, and so on, are known to be far above those of Korean and upto one of the most advanced in the world, it is necessary that the acquisition of these technologies, resulting in the enhancement of the levels of domestic technologies in these fields, implementation of joint research projects for technology development as well as the balanced opportunities for commercial product/sales and cooperation should be actively pursued

Korea-China Optical Technology Research Centre Project

Energy Technology Data Exchange (ETDEWEB)

Kim, Cheol Jung; Rhee, Y. J.; Jung, D. Y. and others

2004-06-15

The main objectives of this project are to establish the international collaboration basis of optical technologies between Korea and China. The combination of the Chinese advanced fundamental technologies with the Korean industrialization and commercialization infrastructures is realized, by ways of exchanging scientists and informations, holding joint seminars, cooperative utilization of research resources. On the ground of this establishment, the optical technologies of Korea are supposed to be leveled up to those of the world-most advanced. At the same time, for the improvement of mutual benefit and financial profit of both countries, providing technical advice and suggestions to the optical industries in the two countries is an another goal of this project. The state-of-the-arts of the Chinese technologies such as aerospace engineering, military defence technology, medical technology, laser fusion research, and so on, are known to be far above those of Korean and up to one of the most advanced in the world. Thus it is thought to be necessary that the acquisition of these technologies, implementation of joint research projects for technology development as well as the balanced opportunities for commercial product/sales and cooperation should be actively pursued in order to enhance the levels of Korean technologies in these fields.

Sharing programming resources between Bio* projects through remote procedure call and native call stack strategies.

Science.gov (United States)

Prins, Pjotr; Goto, Naohisa; Yates, Andrew; Gautier, Laurent; Willis, Scooter; Fields, Christopher; Katayama, Toshiaki

2012-01-01

Open-source software (OSS) encourages computer programmers to reuse software components written by others. In evolutionary bioinformatics, OSS comes in a broad range of programming languages, including C/C++, Perl, Python, Ruby, Java, and R. To avoid writing the same functionality multiple times for different languages, it is possible to share components by bridging computer languages and Bio* projects, such as BioPerl, Biopython, BioRuby, BioJava, and R/Bioconductor. In this chapter, we compare the two principal approaches for sharing software between different programming languages: either by remote procedure call (RPC) or by sharing a local call stack. RPC provides a language-independent protocol over a network interface; examples are RSOAP and Rserve. The local call stack provides a between-language mapping not over the network interface, but directly in computer memory; examples are R bindings, RPy, and languages sharing the Java Virtual Machine stack. This functionality provides strategies for sharing of software between Bio* projects, which can be exploited more often. Here, we present cross-language examples for sequence translation, and measure throughput of the different options. We compare calling into R through native R, RSOAP, Rserve, and RPy interfaces, with the performance of native BioPerl, Biopython, BioJava, and BioRuby implementations, and with call stack bindings to BioJava and the European Molecular Biology Open Software Suite. In general, call stack approaches outperform native Bio* implementations and these, in turn, outperform RPC-based approaches. To test and compare strategies, we provide a downloadable BioNode image with all examples, tools, and libraries included. The BioNode image can be run on VirtualBox-supported operating systems, including Windows, OSX, and Linux.

BioWires: DNA-Based Nanowires for Conductivity-Enhanced, Self-Assembling Nanoelectronics

Data.gov (United States)

National Aeronautics and Space Administration — The BioWires project seeks to overcome two central issues identified in TA10-Nanotechnology: first, the miniaturization of nanoelectronics systems with features less...

Cylindrical optical resonators: fundamental properties and bio-sensing characteristics

Science.gov (United States)

Khozeymeh, Foroogh; Razaghi, Mohammad

2018-04-01

In this paper, detailed theoretical analysis of cylindrical resonators is demonstrated. As illustrated, these kinds of resonators can be used as optical bio-sensing devices. The proposed structure is analyzed using an analytical method based on Lam's approximation. This method is systematic and has simplified the tedious process of whispering-gallery mode (WGM) wavelength analysis in optical cylindrical biosensors. By this method, analysis of higher radial orders of high angular momentum WGMs has been possible. Using closed-form analytical equations, resonance wavelengths of higher radial and angular order WGMs of TE and TM polarization waves are calculated. It is shown that high angular momentum WGMs are more appropriate for bio-sensing applications. Some of the calculations are done using a numerical non-linear Newton method. A perfect match of 99.84% between the analytical and the numerical methods has been achieved. In order to verify the validity of the calculations, Meep simulations based on the finite difference time domain (FDTD) method are performed. In this case, a match of 96.70% between the analytical and FDTD results has been obtained. The analytical predictions are in good agreement with other experimental work (99.99% match). These results validate the proposed analytical modelling for the fast design of optical cylindrical biosensors. It is shown that by extending the proposed two-layer resonator structure analyzing scheme, it is possible to study a three-layer cylindrical resonator structure as well. Moreover, by this method, fast sensitivity optimization in cylindrical resonator-based biosensors has been possible. Sensitivity of the WGM resonances is analyzed as a function of the structural parameters of the cylindrical resonators. Based on the results, fourth radial order WGMs, with a resonator radius of 50 μm, display the most bulk refractive index sensitivity of 41.50 (nm/RIU).

An optical water type framework for selecting and blending retrievals from bio-optical algorithms in lakes and coastal waters

OpenAIRE

Moore, Timothy S.; Dowell, Mark D.; Bradt, Shane; Verdu, Antonio Ruiz

2014-01-01

Bio-optical models are based on relationships between the spectral remote sensing reflectance and optical properties of in-water constituents. The wavelength range where this information can be exploited changes depending on the water characteristics. In low chlorophyll-a waters, the blue/green region of the spectrum is more sensitive to changes in chlorophyll-a concentration, whereas the red/NIR region becomes more important in turbid and/or eutrophic waters. In this work we present an appro...

Small Molecule-BIO Accelerates and Enhances Marrow-Derived Mesenchymal Stem Cell in Vitro Chondrogenesis

Directory of Open Access Journals (Sweden)

Mohamadreza Baghaban Eslaminejad

2014-03-01

Full Text Available Background: Hyaline cartilage defects exhibit a major challenge in the field of orthopedic surgery owing to its limited repair capacity. On the other hand, mesenchymal stem cells (MSCs are regarded as potent cells with a property of cartilage regeneration. We aimed to optimize marrow-derived MSC chondrogenic culture using a small bioactive molecule referred to as BIO. Methods: MSCs from the marrow of NMRI mice were extracted, culture-expanded, and characterized. Micro-mass culture was then established for chondrogenic differentiation (control group. The cultures of MSC in chondrogenic medium supplemented with 0.01, 0.05, 0.1, and 1 µM BIO were taken as the experimental groups. Cartilage differentiation was examined by both histological sections and real-time PCR for Sox9, aggrecan, and collagen II at different time points. Moreover, the involvement of the Wnt pathway was investigated. Results: Based on histological sections, there was seemingly more intense metachromatic matrix produced in the cultures with 0.01 µM BIO. In this experimental group, cartilage-specific genes tended to be upregulated at day 14 compared to day 21 of the control group, indicating the accelerating effect of BIO on cartilage differentiation. Overall, there was statistically a significant increase (P=0.01 in the expression level of cartilage-specific genes in cultures with 0.01 µM BIO (enhancing effects. These upregulations appeared to be mediated through the Wnt pathway evident from the significant upregulation of T-cell factor and beta-catenin molecules (P=0.01. Conclusion: Taken together, BIO at 0.01 µM could accelerate and enhance in vitro chondrogenesis of mouse marrow-derived MSCs. Please cite this article as: Baghaban Eslaminejad MR, Fallah N. Small Molecule-BIO Accelerates and Enhances Marrow-Derived Mesenchymal Stem Cell in Vitro Chondrogenesis. Iran J Med Sci. 2014;39(2:107-116.

Information Optics and Photonics Algorithms, Systems, and Applications

CERN Document Server

Javidi, Bahram

2010-01-01

This book addresses applications, recent advances, and emerging areas in fields with applications in information optics and photonics systems. The objective of this book is to illustrate and discuss novel approaches, analytical techniques, models, and technologies that enhance sensing, measurement, processing, interpretation, and visualization of information using free space optics and photonics. The material in this book concentrates on integration of diverse fields for cross-disciplinary applications including bio-photonics, digitally enhanced sensing and imaging systems, multi-dimensional optical imaging and image processing, bio-inspired imaging, 3D visualization, 3D displays, imaging on the nano-scale, quantum optics, super resolution imaging, photonics for biological applications, and holographic information systems. As a result, this book is a useful resource for researchers, engineers, and graduate students who work in the diverse fields comprising information optics and photonics.

Biomass gasification to heat, electricity and biofuels. HighBio project publication

Energy Technology Data Exchange (ETDEWEB)

Lassi, U.; Wikman, B. (eds.)

2011-07-01

Renewable energy and the use of biomass in energy production promotes sustainable development and decreases the use of fossil fuels. Biomass, e.g. wood chips can be used in the production of heat and electricity, as well as being used as a biofuel component and novel product for the chemical industry. Efficient utilisation of biomass requires a high level of knowledge and the development of new processes to create a new way of thinking. In this process, international co-operation plays a significant role. The aim of the HighBio project was to produce new information on biomass gasification and the utilisation opportunities of product gas in biofuel and biochemicals production. The project was also aimed at studying utilisation properties of biogasification ashes in distributed energy production. Small-scaled CHP plants can be used for simultaneous heat and power production by gasifying wood chips and by burning energy intensive product gas. Compared with thermal combustion, particulate emissions from gasification are lower, which also contributes to the EU's ever tightening emission legislation. Several small and middle scale companies in the Northern part of Finland and Sweden have worked with biomass gasification, and during the project, the birth of new ones has been seen. In this development stage, researchers of the HighBio project have also been strongly involved. Increased use of renewable energy opens up new possibilities for entrepreneurship and the birth of new companies, especially in rural areas. In order to enable these opportunities, we need research data from the universities, novel innovations, and especially their successful commercialisation. The HighBio project has also contributed to tackling those challenges by arranging research seminars and meetings to companies and other interest groups, as well as by establishing research activities and collaborations. Regional collaboration combined with national and international research networks

The CC-Bio Project: Studying the Effects of Climate Change on Quebec Biodiversity

Directory of Open Access Journals (Sweden)

Luc Vescovi

2010-11-01

Full Text Available Anticipating the effects of climate change on biodiversity is now critical for managing wild species and ecosystems. Climate change is a global driver and thus affects biodiversity globally. However, land-use planners and natural resource managers need regional or even local predictions. This provides scientists with formidable challenges given the poor documentation of biodiversity and its complex relationships with climate. We are approaching this problem in Quebec, Canada, through the CC-Bio Project (http://cc‑bio.uqar.ca/, using a boundary organization as a catalyst for team work involving climate modelers, biologists, naturalists, and biodiversity managers. In this paper we present the CC-Bio Project and its general approach, some preliminary results, the emerging hypothesis of the northern biodiversity paradox (a potential increase of biodiversity in northern ecosystems due to climate change, and an early assessment of the conservation implications generated by our team work.

Ligand-Enhanced Optical Response of Gold Nanomolecules and Its Fragment Projection Analysis: The Case of Au ₃₀ (SR) ₁₈

Energy Technology Data Exchange (ETDEWEB)

Sementa, Luca; Barcaro, Giovanni; Baseggio, Oscar; De Vetta, Martina; Dass, Amala; Apra, Edoardo; Stener, Mauro; Fortunelli, Alessandro

2017-01-10

Here we investigate via first-principles simulations the optical absorption spectra of three different Au30(SR)18 monolayer-protected clusters (MPC): Au30(StBu)18, which is known in the literature and whose crystal structure is available, and two species – Au30(SPh)18 and Au30(SPh-pNO2)18 – which have been designed by replacing the tert-butyl organic residues with aromatic ones so as to investigate the effects of ligand replacement on the optical response of Au nanomolecules. In analogy with previously studied but rather different Au23(SR)16- anionic species, a substantial ligand-enhancement of the absorption intensity in the optical region is obtained for the Au30(SPhpNO2)18 neutral MPC. This demonstrates that using conjugated aromatic ligands with properly chosen electron withdrawal substituents and exhibiting steric hindrance so as to also achieve charge decompression at the surface is a general approach to enhance MPC photo-absorption intensity in the optical region. Moreover, the ligand-enhancement phenomenon is subjected to a detailed analysis based on fragment projection of electronic excited states and on induced transition densities, leading to a better understanding of its physical origin, thus opening avenues to its more precise control and exploitation.

Systems and methods for enhancing optical information

Science.gov (United States)

DeVore, Peter Thomas Setsuda; Chou, Jason T.

2018-01-02

An Optical Information Transfer Enhancer System includes a first system for producing an information bearing first optical wave that is impressed with a first information having a first information strength wherein the first optical wave has a first shape. A second system produces a second optical wave. An information strength enhancer module receives the first and said second optical waves and impresses the first optical wave upon the second optical wave via cross-phase modulation (XPM) to produce an information-strength-enhanced second optical wave having a second information strength that is greater than the first information strength of the first optical wave. Following a center-wavelength changer by an Optical Information Transfer Enhancer System improves its performance.

Phase shifting white light interferometry using colour CCD for optical metrology and bio-imaging applications

Science.gov (United States)

Upputuri, Paul Kumar; Pramanik, Manojit

2018-02-01

Phase shifting white light interferometry (PSWLI) has been widely used for optical metrology applications because of their precision, reliability, and versatility. White light interferometry using monochrome CCD makes the measurement process slow for metrology applications. WLI integrated with Red-Green-Blue (RGB) CCD camera is finding imaging applications in the fields optical metrology and bio-imaging. Wavelength dependent refractive index profiles of biological samples were computed from colour white light interferograms. In recent years, whole-filed refractive index profiles of red blood cells (RBCs), onion skin, fish cornea, etc. were measured from RGB interferograms. In this paper, we discuss the bio-imaging applications of colour CCD based white light interferometry. The approach makes the measurement faster, easier, cost-effective, and even dynamic by using single fringe analysis methods, for industrial applications.

Permeable bio-reactive barriers for hydrocarbon remediation in Antarctica

Energy Technology Data Exchange (ETDEWEB)

Mumford, K.A.; Stevens, G.W.; Gore, D.B. [Melbourne Univ., Victoria (Australia). Dept. of Chemical and Biomoleculuar Engineering, Particulate Fluids Processing Centre; Snape, I.; Rayner, J.L. [Australian Antarctic Div., Kingston, Tasmania (Australia); Gore, D.B. [Macquarie Univ., Sydney, NSW (Australia). Dept. of Environmental Science

2010-07-01

This study assessed the performance of a permeable bio-reactive barrier designed to treat contaminated water. The bio-reactive barrier was installed at a fuel spill site located in the Windmill Islands, Antarctica. A funnel and gate design was used to prevent contaminant migration beyond the barrier location as well as to ensure controlled nutrient delivery. The study also investigated the performance of the bio-reactive barrier in regions with freeze-thaw conditions. The 4-year project was also conducted to assess optimal conditions for enhancing the barrier's ability to degrade hydrocarbons.

Spatial-temporal bio-optical classification of dynamic semi-estuarine waters in western North America

Science.gov (United States)

Phillips, Stephen Robert; Costa, Maycira

2017-12-01

The use of standard ocean colour reflectance based algorithms to derive surface chlorophyll may have limited applicability for optically dynamic coastal waters due to the pre-defined coefficients based on global datasets. Reflectance based algorithms adjusted to regional optical water characteristics are a promising alternative. A class-based definition of optically diverse coastal waters was investigated as a first step towards the development of temporal and spatial constrained reflectance based algorithms for optically variable coastal waters. A large set of bio-optical data were collected as part of five research cruises and bi-weekly trips aboard a ship of opportunity in the west coast of Canada, to assess the spatial and temporal variability of above-water reflectance in this contrasted coastal environment. To accomplish this, in situ biophysical and optical measurements were collected in conjunction with above-water hyperspectral remote sensing reflectance (Rrs) at 145 stations. The concentrations of measured biophysical data varied considerably; chlorophyll a (Chla) (mean = 1.64, range: 0.10-7.20 μg l-1), total suspended matter (TSM) (3.09, 0.82-20.69 mg l-1), and absorption by chromophoric dissolved organic matter (CDOM) (acdom(443 nm)) (0.525, 0.007-3.072 m-1), thus representing the spatio-temporal variability of the Salish Sea. Optically, a similar large range was also found; particulate scattering (bp(650 nm)) (1.316, 0.250-7.450 m-1), particulate backscattering (bbp(650 nm)) (0.022, 0.005-0.097 m-1), total beam attenuation coefficient (ct(650)) (1.675, 0.371-9.537 m-1) and particulate absorption coefficient (ap(650 nm)) (0.345, 0.048-2.020 m-1). An empirical orthogonal function (EOF) analysis revealed that Rrs variability was highly correlated to bp (r = 0.90), bbp (r = 0.82) and concentration of TSM (r = 0.80), which highlighted the dominant role of water turbidity in this region. Hierarchical clustering analysis was applied to the normalized Rrs

Optical bio-chemical sensors on SNOW ring resonators

Science.gov (United States)

Khorasaninejad, Mohammadreza; Clarke, Nigel; Anantram, M. P.; Singh Saini, Simarjeet

2011-08-01

In this paper, we propose and analyze novel ring resonator based bio-chemical sensors on silicon nanowire optical waveguide (SNOW) and show that the sensitivity of the sensors can be increased by an order of magnitude as compared to silicon-on-insulator based ring resonators while maintaining high index contrast and compact devices. The core of the waveguide is hollow and allows for introduction of biomaterial in the center of the mode, thereby increasing the sensitivity of detection. A sensitivity of 243 nm/refractive index unit (RIU) is achieved for a change in bulk refractive index. For surface attachment, the sensor is able to detect monolayer attachments as small as 1 Å on the surface of the silicon nanowires.

BioTfueL Project: Targeting the Development of Second-Generation Bio-diesel and Bio-jet Fuels

International Nuclear Information System (INIS)

Viguie, J.C.; Ullrich, N.; Porot, P.; Bournay, L.; Hecquet, M.; Rousseau, J.

2013-01-01

2. generation biofuels will have an important part to take in the energy transition as far as fuels are concerned. Using non edible biomass, they will avoid any direct competition with food usage. Within second generation biofuels, the BTL route consists in the production of middle distillates (Diesel and jet fuel) via gasification and Fischer-Tropsch (FT) synthesis. These fuels are called 'drop in' fuels; this means that to be used they technically do not request any modification in the vehicle whatever the blending rate with conventional fuels. This route is currently at the pre-industrial phase where demonstration is required. This article presents the BioTfueL project which has been created by Axens, CEA, IFP Energies Nouvelles, Sofiproteol, ThyssenKrupp Uhde and Total. This project is focused on the original concept of co-processing (biomass can be gasified together with fossil feedstock) and proposes to develop and demonstrate a full process chain to be commercialized worldwide via licensing. (authors)

Sustainable coatings from bio-based, enzymatically synthesized polyesters with enhanced functionalities

NARCIS (Netherlands)

Gustini, L.; Lavilla, C.; Finzel, L.; Noordover, B.A.J.; Hendrix, M.M.R.M.; Koning, C.E.

2016-01-01

Bio-based sorbitol-containing polyester polyols were synthesized via enzymatic polycondensation. The selectivity of the biocatalyst for primary vs. secondary hydroxyl groups allowed for the preparation of close to linear renewable polyester polyols with enhanced hydroxyl functionalities, both as

On the Relationship Between Satellite-Estimated Bio-Optical and Thermal Properties in the Gulf of Mexico

National Research Council Canada - National Science Library

Jolliff, Jason K; Kindle, John C; Penta, Bradley; Helber, Robert; Lee, Zhongping; Shulman, Igor G; Amone, Robert A; Rowley, Clark D

2008-01-01

.... Navy's Modular Ocean Data Assimilation System (MODAS) in order to examine the interdependencies between bio-optical fields and their relationship to seasonal and mesoscale changes in upper ocean thermal structure...

A bio-optical model suitable for use in forward and inverse coupled atmosphere-ocean radiative transfer models

International Nuclear Information System (INIS)

Zhang Kexin; Li Wei; Eide, Hans; Stamnes, Knut

2007-01-01

A simple, yet complete bio-optical model for the inherent optical properties (IOPs) of oceanic waters is developed. This bio-optical model is specifically designed for use in comprehensive, multiple scattering radiative transfer models for the coupled atmosphere-ocean system. Such models can be used to construct next-generation algorithms for simultaneous retrieval of aerosol and marine parameters. The computed remote sensing reflectance R rs (λ) is validated against field measurements of R rs (λ) compiled in the SeaBASS data base together with simultaneous chlorophyll concentrations (C) ranging from 0.03 to 100mgm -3 . This connection between R rs and C is used to construct a chlorophyll concentration retrieval algorithm that yields reliable results for a large range of chlorophyll concentrations. The overall performance of a MODIS/VIIRS chlorophyll concentration retrieval algorithm is found to be less satisfactory

Optic issues in ongoing ERL projects

International Nuclear Information System (INIS)

Smith, S.L.; Muratori, B.D.; Owen, H.L.; Hoffstaetter, G.H.; Litvinenko, V.N.; Ben-Zvi, I.; Bai, M.; Beebe-Wang, J.; Blaskiewicz, M.; Calaga, R.; Fischer, W.; Chang, X.Y.; Kayran, D.; Kewisch, J.; MacKay, W.W.; Montag, C.; Parker, B.; Ptitsyn, V.; Roser, T.; Ruggiero, A.; Satogata, T.; Surrow, B.; Tepikian, S.; Trbojevic, D.; Yakimenko, V.; Zhang, S.Y.; Piot, Ph.

2006-01-01

A wide range of optics issues for energy recovery linac (ERL)-based projects are illustrated through the presentation of ongoing projects covering both light sources, at Cornell and Daresbury and high energy and nuclear physics accelerators at the Brookhaven National Laboratory. This presented range of projects demonstrates how the different designs teams see the challenges of studying and solving optics issues for their particular project's ERLs, with studies appropriate to the stage of maturity of the project. Finally, as an illustration of the complexity and detail behind a single aspect of ERL optics design we present an overview of the highly important generic topic of longitudinal phase space evolution in ERLs

Data harmonization and federated analysis of population-based studies : the BioSHaRE project

NARCIS (Netherlands)

Doiron, Dany; Burton, Paul; Marcon, Yannick; Gaye, Amadou; Wolffenbuttel, Bruce H R; Perola, Markus; Stolk, Ronald P; Foco, Luisa; Minelli, Cosetta; Waldenberger, Melanie; Holle, Rolf; Kvaløy, Kirsti; Hillege, Hans L; Tassé, Anne-Marie; Ferretti, Vincent; Fortier, Isabel

2013-01-01

ABSTRACTS BACKGROUND: Individual-level data pooling of large population-based studies across research centres in international research projects faces many hurdles. The BioSHaRE (Biobank Standardisation and Harmonisation for Research Excellence in the European Union) project aims to address these

BioTiger{sup TM} : a natural microbial product for enhanced hydrocarbon recovery from oil sands

Energy Technology Data Exchange (ETDEWEB)

Brigmon, R.L.; Berry, C.J.; Milliken, C.E.; Jones, W. [Savannah River National Laboratory, Aiken, SC (United States)

2008-07-01

This presentation discussed the feasibility of using BioTiger{sup TM} technology to increase hydrocarbon recovery from oil sands. This enhanced ex situ oil recovery processes was initially developed and used by the United States Department of Energy for bioremediation of soils contaminated with oil, but it may also be used to optimize bitumen separation. BioTiger was described as being a unique microbial consortia that has resulted from nearly a decade of extensive microbiology screening and characterization of samples collected from an old waste lagoon. The technology offers rapid and complete degradation of aliphatic and aromatic hydrocarbons and produces new surfactants. It is tolerant of both chemical and metal toxicity and has good activity at high temperatures at extreme pH levels. A flotation test protocol with oil sands from Fort McMurray, Alberta was used for the BioTiger evaluation. A comparison of hot water extraction/flotation test of the oil sands performed with BioTiger showed a 50 per cent improvement in separation as measured by gravimetric analysis. BioTiger is well suited for enhanced hydrocarbon recovery from oil sands because it performs well at high temperatures. 8 figs.

Spectroscopic enhancement in nanoparticles embedded glasses

Energy Technology Data Exchange (ETDEWEB)

Sahar, M. R., E-mail: mrahim057@gmail.com; Ghoshal, S. K., E-mail: mrahim057@gmail.com [Advanced Optical Material Research Group, Department of Physics, Faculty of Science, Universiti Teknologi Malaysia, 81310, Skudai, Johor Bahru, Johor (Malaysia)

2014-09-25

This presentation provides an overview of the recent progress in the enhancement of the spectroscopic characteristics of the glass embedded with nanoparticles (NPs). Some of our research activities with few significantly new results are highlighted and facilely analyzed. The science and technology dealing with the manipulation of the physical properties of rare earth doped inorganic glasses by embedding metallic NPs or nanoclusters produce the so-called 'nanoglass'. Meanwhile, the spectroscopic enhancement relates the intensity of the luminescence measured at certain transition. The enhancement which expectedly due to the 'plasmonics wave' (referring to the coherent coupling of photons to free electron oscillations called plasmon) occurs at the interface between a conductor and a dielectric. Plasmonics being an emerging concept in advanced optical material of nanophotonics has given this material the ability to exploit the optical response at nanoscale and opened up a new avenue in metal-based glass optics. There is a vast array of plasmonic NPs concepts yet to be explored, with applications spanning solar cells, (bio) sensing, communications, lasers, solid-state lighting, waveguides, imaging, optical data transfer, display and even bio-medicine. Localized surface plasmon resonance (LSPR) can enhance the optical response of nanoglass by orders of magnitude as observed. The luminescence enhancement and surface enhanced Raman scattering (SERS) are new paradigm of research. The enhancement of luminescence due to the influence of metallic NPs is the recurring theme of this paper.

A novel liquid-filled microstructured polymer optical fiber as bio-sensing platform for Raman spectroscopy

Science.gov (United States)

Azkune, Mikel; Arrospide, Eneko; Berganza, Amaia; Bikandi, Iñaki; Aldabaldetreku, Gotzon; Durana, Gaizka; Zubia, Joseba

2018-02-01

One approach to overcome the poor efficiency of the Raman scattering as a sensing platform is to use microstructured optical fibers. In this type of fibers with a longitudinal holey structure, light interacts with the target sample, which is confined in the core, giving rise to a light intensity increase of the obtained Raman spectra due to the large interaction distances and the guidance of the scattered light. In this work, we present an ad-hoc fabricated liquid-core microstructured polymer optical fiber (LC-mPOF) as a bio-sensing platform for Raman Spectroscopy. Arising from an initial simulation stage, we create the desired preform using the drilling technique and afterwards the LC-mPOF is drawn in our fiber drawing tower. The guiding mechanism of the light through the solution has a major importance, being a key factor to obtain appreciable enhancements in Raman scattering. In this case, in order to optimize the Raman scattering signal of dissolved glucose (target molecule), we have filled the core with an aqueous solution of the target molecule, enabling in this way the modified total internal reflection mechanism. Experimental Raman measurements are performed and results are discussed.

Efficacy of saccharides bio-template on structural, morphological, optical and antibacterial property of ZnO nanoparticles.

Science.gov (United States)

Dhanalakshmi, A; Palanimurugan, A; Natarajan, B

2018-09-01

Mono, di and polysaccharides of glucose (C 6 H 12 O 6 ), sucrose (C 12 H 24 O 12 ) and starch (C 6 H 12 O 6 ) n bio-template ZnO nanoparticles (NPs) has prepared by chemical precipitation method. Saccharides bio-template ZnO (SBts-ZnO) NPs were efficiently prepared for their structural and optical properties were examined by using XRD, FE-SEM, AFM, FTIR, UV and PL techniques. All the samples are polycrystalline nature with a preferential orientation depending on the (1 0 1) plane. The reduction of crystalline size by utilizing glucose, sucrose and starch bio-template of ZnO NPs. FE-SEM images revealed that the spherical and nano-rods like morphologies for ZnO and SBts-ZnO NPs respectively. AFM recorded images shows spherical features that confirmed and also the morphological changes were noticed with the addition of polymers. Interaction of bio-templated saccharides (glucose G 1 , sucrose S 2 & starch S n ) molecules was proved by FTIR study. Optical absorbance and emission behaviours were investigated using UV-Vis and photoluminescence techniques. The antibacterial study revealed that SBts-ZnO have excellent antibacterial effect than ZnO. The S n -ZnO sample has potent antibacterial activity against the Proteus vulgaris followed by Klebsiella pneumoniae, Escherichia coli and Staphylococcus aureus. Copyright © 2018 Elsevier B.V. All rights reserved.

Bio-optical profiling floats as new observational tools for biogeochemical and ecosystem studies: Potential synergies with ocean color remote sensing

CSIR Research Space (South Africa)

Claustre, H

2009-09-01

Full Text Available Color Coordinating Group) BIO-Argo working group is to elaborate recommendations in view of a future use of bio-optical profiling floats as part of a network that would include a global array that could be "Argo-relevant", and specific arrays that would...

Fiber-Optic Bio-sniffer (Biochemical Gas Sensor) Using Reverse Reaction of Alcohol Dehydrogenase for Exhaled Acetaldehyde.

Science.gov (United States)

Iitani, Kenta; Chien, Po-Jen; Suzuki, Takuma; Toma, Koji; Arakawa, Takahiro; Iwasaki, Yasuhiko; Mitsubayashi, Kohji

2018-02-23

Volatile organic compounds (VOCs) exhaled in breath have huge potential as indicators of diseases and metabolisms. Application of breath analysis for disease screening and metabolism assessment is expected since breath samples can be noninvasively collected and measured. In this research, a highly sensitive and selective biochemical gas sensor (bio-sniffer) for gaseous acetaldehyde (AcH) was developed. In the AcH bio-sniffer, a reverse reaction of alcohol dehydrogenase (ADH) was employed for reducing AcH to ethanol and simultaneously consuming a coenzyme, reduced form of nicotinamide adenine dinucleotide (NADH). The concentration of AcH can be quantified by fluorescence detection of NADH that was consumed by reverse reaction of ADH. The AcH bio-sniffer was composed of an ultraviolet light-emitting diode (UV-LED) as an excitation light source, a photomultiplier tube (PMT) as a fluorescence detector, and an optical fiber probe, and these three components were connected with a bifurcated optical fiber. A gas-sensing region of the fiber probe was developed with a flow-cell and an ADH-immobilized membrane. In the experiment, after optimization of the enzyme reaction conditions, the selectivity and dynamic range of the AcH bio-sniffer were investigated. The AcH bio-sniffer showed a short measurement time (within 2 min) and a broad dynamic range for determination of gaseous AcH, 0.02-10 ppm, which encompassed a typical AcH concentration in exhaled breath (1.2-6.0 ppm). Also, the AcH bio-sniffer exhibited a high selectivity to gaseous AcH based on the specificity of ADH. The sensor outputs were observed only from AcH-contained standard gaseous samples. Finally, the AcH bio-sniffer was applied to measure the concentration of AcH in exhaled breath from healthy subjects after ingestion of alcohol. As a result, a significant difference of AcH concentration between subjects with different aldehyde dehydrogenase type 2 (ALDH2) phenotypes was observed. The AcH bio-sniffer can be

Forecasting the Ocean’s Optical Environment: Development of the BioCast System

Science.gov (United States)

2014-09-01

Gulf of Mexico (data not shown). Additional advancements in ocean optical forecasting will also result from the integration of BioCast with other...uniformed sailors and marines would have been rather conspicuous against the turbid gray waves marking the entryway to the riotous North Sea. Two...Detection of underwater mines with airborne, towed, or autonomous under- water platforms can be severely impeded by sustained water column turbidity

Hypothalamic Projections to the Optic Tectum in Larval Zebrafish

Science.gov (United States)

Heap, Lucy A.; Vanwalleghem, Gilles C.; Thompson, Andrew W.; Favre-Bulle, Itia; Rubinsztein-Dunlop, Halina; Scott, Ethan K.

2018-01-01

The optic tectum of larval zebrafish is an important model for understanding visual processing in vertebrates. The tectum has been traditionally viewed as dominantly visual, with a majority of studies focusing on the processes by which tectal circuits receive and process retinally-derived visual information. Recently, a handful of studies have shown a much more complex role for the optic tectum in larval zebrafish, and anatomical and functional data from these studies suggest that this role extends beyond the visual system, and beyond the processing of exclusively retinal inputs. Consistent with this evolving view of the tectum, we have used a Gal4 enhancer trap line to identify direct projections from rostral hypothalamus (RH) to the tectal neuropil of larval zebrafish. These projections ramify within the deepest laminae of the tectal neuropil, the stratum album centrale (SAC)/stratum griseum periventriculare (SPV), and also innervate strata distinct from those innervated by retinal projections. Using optogenetic stimulation of the hypothalamic projection neurons paired with calcium imaging in the tectum, we find rebound firing in tectal neurons consistent with hypothalamic inhibitory input. Our results suggest that tectal processing in larval zebrafish is modulated by hypothalamic inhibitory inputs to the deep tectal neuropil. PMID:29403362

Hypothalamic Projections to the Optic Tectum in Larval Zebrafish

Directory of Open Access Journals (Sweden)

Lucy A. Heap

2018-01-01

Full Text Available The optic tectum of larval zebrafish is an important model for understanding visual processing in vertebrates. The tectum has been traditionally viewed as dominantly visual, with a majority of studies focusing on the processes by which tectal circuits receive and process retinally-derived visual information. Recently, a handful of studies have shown a much more complex role for the optic tectum in larval zebrafish, and anatomical and functional data from these studies suggest that this role extends beyond the visual system, and beyond the processing of exclusively retinal inputs. Consistent with this evolving view of the tectum, we have used a Gal4 enhancer trap line to identify direct projections from rostral hypothalamus (RH to the tectal neuropil of larval zebrafish. These projections ramify within the deepest laminae of the tectal neuropil, the stratum album centrale (SAC/stratum griseum periventriculare (SPV, and also innervate strata distinct from those innervated by retinal projections. Using optogenetic stimulation of the hypothalamic projection neurons paired with calcium imaging in the tectum, we find rebound firing in tectal neurons consistent with hypothalamic inhibitory input. Our results suggest that tectal processing in larval zebrafish is modulated by hypothalamic inhibitory inputs to the deep tectal neuropil.

Ocean Optics Protocols for Satellite Ocean Color Sensor Validation, Revision 4, Volume IV: Inherent Optical Properties: Instruments, Characterizations, Field Measurements and Data Analysis Protocols

Science.gov (United States)

Mueller, J. L.; Fargion, G. S.; McClain, C. R. (Editor); Pegau, S.; Zanefeld, J. R. V.; Mitchell, B. G.; Kahru, M.; Wieland, J.; Stramska, M.

2003-01-01

This document stipulates protocols for measuring bio-optical and radiometric data for the Sensor Intercomparision and Merger for Biological and Interdisciplinary Oceanic Studies (SIMBIOS) Project activities and algorithm development. The document is organized into 6 separate volumes as Ocean Optics Protocols for Satellite Ocean Color Sensor Validation, Revision 4. Volume I: Introduction, Background, and Conventions; Volume II: Instrument Specifications, Characterization and Calibration; Volume III: Radiometric Measurements and Data Analysis Methods; Volume IV: Inherent Optical Properties: Instruments, Characterization, Field Measurements and Data Analysis Protocols; Volume V: Biogeochemical and Bio-Optical Measurements and Data Analysis Methods; Volume VI: Special Topics in Ocean Optics Protocols and Appendices. The earlier version of Ocean Optics Protocols for Satellite Ocean Color Sensor Validation, Revision 3 is entirely superseded by the six volumes of Revision 4 listed above.

Bio-optofluidics and biophotonics at the cellular level

DEFF Research Database (Denmark)

Bañas, Andrew Rafael; Palima, Darwin; Tauro, Sandeep

2012-01-01

We present ongoing research and development activities for constructing a compact next generation BioPhotonics Workstation and a Bio-optofluidic Cell Sorter (cell-BOCS) for all-optical micro-manipulation platforms utilizing low numerical aperture beam geometries. Unlike conventional high NA optical...

Projective measurements in quantum and classical optical systems

CSIR Research Space (South Africa)

Roux, FS

2014-09-01

Full Text Available equally well to both classical and quantum optical systems. A projective measurement, in the context of quantum mechanics, is understood to be the process where a projection operator operates on some input state. Often this projection operator is composed...) Projective measurements in quantum and classical optical systems Filippus S. Roux* and Yingwen Zhang CSIR National Laser Centre, P.O. Box 395, Pretoria 0001, South Africa (Received 3 July 2014; published 22 September 2014) Experimental setups for the optical...

Sharing programming resources between Bio* projects through remote procedure call and native call stack strategies

DEFF Research Database (Denmark)

Prins, Pjotr; Goto, Naohisa; Yates, Andrew

2012-01-01

Open-source software (OSS) encourages computer programmers to reuse software components written by others. In evolutionary bioinformatics, OSS comes in a broad range of programming languages, including C/C++, Perl, Python, Ruby, Java, and R. To avoid writing the same functionality multiple times...... for different languages, it is possible to share components by bridging computer languages and Bio* projects, such as BioPerl, Biopython, BioRuby, BioJava, and R/Bioconductor. In this chapter, we compare the two principal approaches for sharing software between different programming languages: either by remote...... procedure call (RPC) or by sharing a local call stack. RPC provides a language-independent protocol over a network interface; examples are RSOAP and Rserve. The local call stack provides a between-language mapping not over the network interface, but directly in computer memory; examples are R bindings, RPy...

Bio-compatibility, surface and chemical characterization of glow discharge plasma modified ZnO nanocomposite polycarbonate

Energy Technology Data Exchange (ETDEWEB)

Bagra, Bhawna, E-mail: bhawnacct@gmail.com; Pimpliskar, Prashant, E-mail: bhawnacct@gmail.com [Centre for Converging Technologies, University of Rajasthan, Jaipur-302004 (India); Agrawal, Narendra Kumar [Department of Physics, Malaviya National Institute of Technology, Jaipur-302004 (India)

2014-04-24

Bio compatibility is an important issue for synthesis of biomedical devices, which can be tested by bioadoptability and creations of active site to enhance the bacterial/cell growth in biomedical devices. Hence a systematic study was carried out to characterize the effects of Nitrogen ion plasma for creations of active site in nano composite polymer membrane. Nano particles of ZnO are synthesized by chemical root, using solution casting nano composite polymeric membranes were prepared and treated with Nitrogen ion plasma. These membranes were characterized by different technique such as optical microscopy, SEM- Scanning electron microscope, optical transmittance, Fourier transform infrared spectroscopy. Then biocompatibility for membranes was tested by testing of bio-adoptability of membrane.

Enhanced radiation resistant fiber optics

Science.gov (United States)

Lyons, P.B.; Looney, L.D.

1993-11-30

A process for producing an optical fiber having enhanced radiation resistance is provided, the process including maintaining an optical fiber within a hydrogen-containing atmosphere for sufficient time to yield a hydrogen-permeated optical fiber having an elevated internal hydrogen concentration, and irradiating the hydrogen-permeated optical fiber at a time while the optical fiber has an elevated internal hydrogen concentration with a source of ionizing radiation. The radiation source is typically a cobalt-60 source and the fiber is pre-irradiated with a dose level up to about 1000 kilorads of radiation. 4 figures.

Enhanced radiation resistant fiber optics

International Nuclear Information System (INIS)

Lyons, P.B.; Looney, L.D.

1993-01-01

A process for producing an optical fiber having enhanced radiation resistance is provided, the process including maintaining an optical fiber within a hydrogen-containing atmosphere for sufficient time to yield a hydrogen-permeated optical fiber having an elevated internal hydrogen concentration, and irradiating the hydrogen-permeated optical fiber at a time while the optical fiber has an elevated internal hydrogen concentration with a source of ionizing radiation. The radiation source is typically a cobalt-60 source and the fiber is pre-irradiated with a dose level up to about 1000 kilorads of radiation. 4 figures

Dye@bio-MOF-1 Composite as a Dual-Emitting Platform for Enhanced Detection of a Wide Range of Explosive Molecules.

Science.gov (United States)

Wang, Chen; Tian, Li; Zhu, Wei; Wang, Shiqiang; Wang, Peng; Liang, Yun; Zhang, Wanlin; Zhao, Hongwei; Li, Guangtao

2017-06-14

By incorporating a cationic dye within a metal-organic framework (MOF) through an ion-exchange process, a responsive dye@bio-MOF-1 composite has been synthesized, serving as a dual-emitting platform for enhanced detection of different kinds of nitro-explosives, especially nitroalkanes, nitramines, and nitrate esters. The dye@bio-MOF-1 composite was constructed with free amines on their well-defined cavities, which is essential for the capture of explosives into their confined nanospace. It was observed that the encapsulation of explosives into the constructed dye@bio-MOF-1 composite could dramatically alter the luminescent properties of the dyes as well as the MOF skeletons owing to the size exclusivity and confinement-induced effect. For nitroaromatics, the dye@bio-MOF-1 composite exhibits turn-off responses via fluorescence quenching. Unexpectedly, the composite shows unique turn-on responses for aliphatic nitro-organics via confinement-induced enhancement, demonstrating enhanced ability to detecting different kinds of explosives selectively in aqueous solution. Furthermore, the dye@bio-MOF-1 film was facilely fabricated, making the chemical sensing more convenient and easier to realize the discrimination of the targeted explosives. The dual tunable responses indicate that dye@bio-MOF-1 composites are favorable materials for molecular sensing. On the basis of the host-guest properties of the constructed dye@bio-MOF-1 composite, our work can be further extended to sensing specific analytes with remarkable turn-on sensing properties, in particular those difficult to recognize with conventional methods.

Removal Mechanisms of Para-nitrophenol in Reclaimed Water using SAT and its Bio-enhancement

Science.gov (United States)

Wen, Y. L.; Yang, Y.; Zhang, H.; Lou, B.

2017-12-01

Nowadays, we were facing with water resource shortage along with water pollution. It was important to undertake the cost effective technology to treat polluted water whilst encourage water reuse. Soil aquifer treatment (SAT) was an efficient technology, using the infiltration process of mediation, adsorption and biodegradation on the pollutants in the environment to achieve the goal of recycling water. For a better understanding of the transport and attenuation of para-nitrophenol (P-NP) and the change of microbial community at the stress of p-nitrophenol in soil aquifer treatment system, two column experiments were operated to investigate the physical, chemical, and microbial dynamics. At the same time, the bio-augment method was used to enhance the SAT biodegradation system. The SAT column experiment was operated about 38 days, which demonstrated that two reduction zones were revealed at the middle of the column and the biodiversity of the microbial community could be destroyed under the P-NP stress. Absorption was the main removal mechanism according to the obtained experimental data. By using the displacement method, the BIO-SAT system was operated about 36 days, which showed perfect outcome for the P-NP removal at a higher concentration. From the PCR-DGGE and high throughput sequencing study, enhanced bacteria could form a stable biological community with indigenous communities. Through the Canonical Correspondence Analysis (CCA) microbial degradation and environmental factors, the results showed that the pH was a very important parameter affects the degradation of nitrophenol degradation bacteria. The metal ions under the condition of low concentration can promote the growth of microbial degradation. This study provide valuable result on the attenuation potential of for the bio-enhanced SAT system (BIO-SAT). (No Image Selected)

Optimizing the bio-optical algorithm for estimating chlorophyll-a and phycocyanin concentrations in inland waters in Korea

Science.gov (United States)

Several bio-optical algorithms were developed to estimate the chlorophyll-a (Chl-a) and phycocyanin (PC) concentrations in inland waters. This study aimed at identifying the influence of the algorithm parameters and wavelength bands on output variables and searching optimal parameter values. The opt...

Enhanced biodegradation of lindane using oil-in-water bio-microemulsion stabilized by biosurfactant produced by a new yeast strain, Pseudozyma VITJzN01.

Science.gov (United States)

Abdul Salam, Jaseetha; Das, Nilanjana

2013-11-28

Organochlorine pesticide residues continue to remain as a major environmental threat worldwide. Lindane is an organochlorine pesticide widely used as an acaricide in medicine and agriculture. In the present study, a new lindane-degrading yeast strain, Pseudozyma VITJzN01, was identified as a copious producer of glycolipid biosurfactant. The glycolipid structure and type were elucidated by FTIR, NMR spectroscopy, and GC-MS analysis. The surface activity and stability of the glycolipid was analyzed. The glycolipids, characterized as mannosylerythritol lipids (MELs), exhibited excellent surface active properties and the surface tension of water was reduced to 29 mN/m. The glycolipid was stable over a wide range of pH, temperature, and salinity, showing a very low CMC of 25 mg/l. Bio-microemulsion of olive oil-in-water (O/W) was prepared using the purified biosurfactant without addition of any synthetic cosurfactants, for lindane solubilization and enhanced degradation assay in liquid and soil slurry. The O/W bio-microemulsions enhanced the solubility of lindane up to 40-folds. Degradation of lindane (700 mg/l) by VITJzN01 in liquid medium amended with bio-microemulsions was found to be enhanced by 36% in 2 days, compared with degradation in 12 days in the absence of bio-microemulsions. Lindane-spiked soil slurry incubated with bio-microemulsions also showed 20-40% enhanced degradation compared with the treatment with glycolipids or yeast alone. This is the first report on lindane degradation by Pseudozyma sp., and application of bio-microemulsions for enhanced lindane degradation. MEL-stabilized bio-microemulsions can serve as a potential tool for enhanced remediation of diverse lindanecontaminated environments.

Bio digester : anaerobic methanogenesis

NARCIS (Netherlands)

Bullema, Marten; Hulzen, Hans; Keizer, Melvin; Pruisscher, Gerlof; Smint, Martin; Vincent, Helene

2014-01-01

As part of the theme 13 and 14, our group have to realize a project in the field of the renewable energy. This project consist of the design of a bio-digester for the canteen of Zernikeplein. Gert Hofstede is our client. To produce energy, a bio-digester uses the anaerobic digestion, which is made

Subnanometric stabilization of plasmon-enhanced optical microscopy

International Nuclear Information System (INIS)

Yano, Taka-aki; Ichimura, Taro; Kuwahara, Shota; Verma, Prabhat; Kawata, Satoshi

2012-01-01

We have demonstrated subnanometric stabilization of tip-enhanced optical microscopy under ambient condition. Time-dependent thermal drift of a plasmonic metallic tip was optically sensed at subnanometer scale, and was compensated in real-time. In addition, mechanically induced displacement of the tip, which usually occurs when the amount of tip-applied force varies, was also compensated in situ. The stabilization of tip-enhanced optical microscopy enables us to perform long-time and robust measurement without any degradation of optical signal, resulting in true nanometric optical imaging with high reproducibility and high precision. The technique presented is applicable for AFM-based nanoindentation with subnanometric precision. (paper)

Electrochemical construction of a bio-inspired micro/nano-textured structure with cell-sized microhole arrays on biomedical titanium to enhance bioactivity

International Nuclear Information System (INIS)

Liang, Jianhe; Song, Ran; Huang, Qiaoling; Yang, Yun; Lin, Longxiang; Zhang, Yanmei; Jiang, Pinliang; Duan, Hongping; Dong, Xiang; Lin, Changjian

2015-01-01

Highlights: • The bio-inspired structure mimicked mulit-level structures of natural bone. • Ordered cell-sized microhole arrays were employed as microscale structure. • High surface roughness and superhydrophilicity were achieved on the titanium surface. • The bio-inspired titanium surface showed superior ability of biomineralization. • Cell responses were enhanced on the bio-inspired micro/nano-texutred surface. - Abstract: Biomimetic surface design of medical implants is vitally crucial to improve cellular responses and the integration of tissue onto materials. In this study, a novel hierarchical cell-sized microhole array combined with a nano-network structure was fabricated on a medical titanium surface to mimic multi-level bone structure. A three-step procedure was developed as follows: 1) electrochemical self-organization of etching on titanium substrate to create highly ordered cell-sized microhole arrays, 2) suitable dual acid etching to increase the roughness of the microholes, and then 3) electrochemical anodization in a NaOH electrolyte to construct a nano-network porous titania layer on the above micro-roughened surface. The bio-inspired micro/nano-textured structure presented the enhanced wettability and superhydrophilicity. The ability of in vitro biomineralization and corrosion resistance of the bio-inspired micro/nano-textured structure were enhanced after annealing treatment. More importantly, the bio-inspired micro/nano-textured structure on the titanium surface possessed a favourable interfacial environment to enhance attachment and proliferation of human osteoblast-like MG63 cells. All of the results demonstrated that such a bio-inspired surface of micro/nano-textured porous TiO 2 is a most promising candidate for the next generation of titanium implants

Optical projects in the Clinic program at Harvey Mudd College

Science.gov (United States)

Yang, Q.

2017-08-01

Clinic program is the senior capstone program at Harvey Mudd College (HMC). Multidisciplinary and industry-sponsored projects allow a team of students to solve a real-world problem over one academic year. Over its 50 plus years, Clinic program has completed numerous optics related projects. This report gives an overview of the Clinic program, reviews recent optical projects and discusses how this program supports the learning of the HMC engineering students. A few sample optical projects with more details are presented to provide an insight of what challenges that undergraduates can overcome. Students achieve learning within the optics discipline and the related engineering disciplines. The experiences in these optical projects indicate the great potential to bringing optical hands-on projects into the undergraduate level. Because of the general engineering curriculum at HMC, these projects often work the best with a multidisciplinary nature even if the core of the project is optically focused. Students gain leadership training, oral and written communication skills and experiences in team work. Close relationship with the sponsor liaisons allows for the students to gain skills in professional conduct, management of tight schedule and a specified budget, and it well prepares the students to their engineering practice. Optical projects have their own sets of specific challenges, so it needs to be chosen properly to match the undergraduate skill sets such as those of HMC engineering students.

The enhancing of Au-Ag-Te content in tellurium-bearing ore mineral by bio-oxidation-leaching

Science.gov (United States)

Kim, PyeongMan; Kim, HyunSoo; Myung, EunJi; Kim, YoonJung; Lee, YongBum; Park*, CheonYoung

2015-04-01

The purpose of this study is to enhance the content of valuable metals such as Au-Ag-Te in tellurium-bearing minerals by bio-oxidation-leaching. It was confirmed that pyrite, chalcopyrite, sphalerite and galena were produced together with tellurium-bearing minerals including hessite, sylvanite and tellurobismuthite from ore minerals and concentrates through microscopic observation and SEM/EDS analysis. In a bio-oxidation-leaching experiment, with regard to Au, Ag, Te, Cu and Fe, the changes in the amount of leaching and the content of leaching residues were compared and analyzed with each other depending on the adaptation of an indigenous microbe identified as Acidithiobacillus ferrooxidans. As a result of the experiment, the Au-Ag-Te content in tellurium-bearing ore mineral was enhanced in the order of physical oxidation leaching, physical/non-adaptive bio-oxidation-leaching and physical/adaptive biological leaching. It suggests that the bio-oxidation-leaching using microbes adapted in tellurium-bearing ore mineral can be used as a pre-treatment and a main process in a recovery process of valuable metals. "This research was supported by Basic Science Research Program through the National Research Foundation of Korea(NRF) funded by the Ministry of Education(NRF-2013R1A1A2004898)"

The Acceptability and Feasibility of Implementing a Bio-Behavioral Enhanced Surveillance Tool for Sexually Transmitted Infections in England: Mixed-Methods Study.

Science.gov (United States)

Wayal, Sonali; Reid, David; Blomquist, Paula B; Weatherburn, Peter; Mercer, Catherine H; Hughes, Gwenda

2018-05-04

Sexually transmitted infection (STI) surveillance is vital for tracking the scale and pattern of epidemics; however, it often lacks data on the underlying drivers of STIs. This study aimed to assess the acceptability and feasibility of implementing a bio-behavioral enhanced surveillance tool, comprising a self-administered Web-based survey among sexual health clinic attendees, as well as linking this to their electronic health records (EHR) held in England's national STI surveillance system. Staff from 19 purposively selected sexual health clinics across England and men who have sex with men and black Caribbeans, because of high STI burden among these groups, were interviewed to assess the acceptability of the proposed bio-behavioral enhanced surveillance tool. Subsequently, sexual health clinic staff invited all attendees to complete a Web-based survey on drivers of STI risk using a study tablet or participants' own digital device. They recorded the number of attendees invited and participants' clinic numbers, which were used to link survey data to the EHR. Participants' online consent was obtained, separately for survey participation and linkage. In postimplementation phase, sexual health clinic staff were reinterviewed to assess the feasibility of implementing the bio-behavioral enhanced surveillance tool. Acceptability and feasibility of implementing the bio-behavioral enhanced surveillance tool were assessed by analyzing these qualitative and quantitative data. Prior to implementation of the bio-behavioral enhanced surveillance tool, sexual health clinic staff and attendees emphasized the importance of free internet/Wi-Fi access, confidentiality, and anonymity for increasing the acceptability of the bio-behavioral enhanced surveillance tool among attendees. Implementation of the bio-behavioral enhanced surveillance tool across sexual health clinics varied considerably and was influenced by sexual health clinics' culture of prioritization of research and

Nano-Bio Quantum Technology for Device-Specific Materials

Science.gov (United States)

Choi, Sang H.

2009-01-01

The areas discussed are still under development: I. Nano structured materials for TE applications a) SiGe and Be.Te; b) Nano particles and nanoshells. II. Quantum technology for optical devices: a) Quantum apertures; b) Smart optical materials; c) Micro spectrometer. III. Bio-template oriented materials: a) Bionanobattery; b) Bio-fuel cells; c) Energetic materials.

Security enhanced BioEncoding for protecting iris codes

Science.gov (United States)

Ouda, Osama; Tsumura, Norimichi; Nakaguchi, Toshiya

2011-06-01

Improving the security of biometric template protection techniques is a key prerequisite for the widespread deployment of biometric technologies. BioEncoding is a recently proposed template protection scheme, based on the concept of cancelable biometrics, for protecting biometric templates represented as binary strings such as iris codes. The main advantage of BioEncoding over other template protection schemes is that it does not require user-specific keys and/or tokens during verification. Besides, it satisfies all the requirements of the cancelable biometrics construct without deteriorating the matching accuracy. However, although it has been shown that BioEncoding is secure enough against simple brute-force search attacks, the security of BioEncoded templates against more smart attacks, such as record multiplicity attacks, has not been sufficiently investigated. In this paper, a rigorous security analysis of BioEncoding is presented. Firstly, resistance of BioEncoded templates against brute-force attacks is revisited thoroughly. Secondly, we show that although the cancelable transformation employed in BioEncoding might be non-invertible for a single protected template, the original iris code could be inverted by correlating several templates used in different applications but created from the same iris. Accordingly, we propose an important modification to the BioEncoding transformation process in order to hinder attackers from exploiting this type of attacks. The effectiveness of adopting the suggested modification is validated and its impact on the matching accuracy is investigated empirically using CASIA-IrisV3-Interval dataset. Experimental results confirm the efficacy of the proposed approach and show that it preserves the matching accuracy of the unprotected iris recognition system.

Naval Research Laboratory Ecological -- Photochemical -- Bio-optical--Numerical Experiment (Neptune) Version 1: A Portable, Flexible Modeling Environment Designed to Resolve Time-dependent Feedbacks Between Upper Ocean Ecology, Photochemistry, and Optics

National Research Council Canada - National Science Library

Jolliff, Jason K; Kindle, John C

2007-01-01

A modeling system has been constructed that combines ecological element cycling, photochemical processes, and bio-optical processes into a single simulation that may be coupled to hydrodynamic models...

Hilbert transform and optical tomography for anisotropic edge enhancement of phase objects

International Nuclear Information System (INIS)

Montes-Perez, Areli; Meneses-Fabian, Cruz; Rodriguez-Zurita, Gustavo

2011-01-01

In phase object tomography a slice reconstruction is related to distribution of refractive index. Typically, this is obtained by applying the filtered back-projection algorithm to the set of projections (sinogram) obtained experimentally, which are sequentially obtained by calculating the phase of the wave emerging from the slice of the object at different angles. In this paper, based on optical implementation of the Hilbert-transform in a 4f Fourier operator, the Hilbert transform of the projections leaving of the object are obtained numerically. When these projection data are captured for a set of viewing angles an unconventional sinogram is eventually obtained, we have called it as an Hilbert-sinogram. The reconstruction obtained by applying the filtered back-projection algorithm is proportional to the Hilbert transform of the distribution of refractive index of the slice and the obtained image shows a typical isotropic edge enhancement. In this manuscript, the theoretical analysis and the numerical implementation of the Hilbert-transform, mathematical model of the edge enhancement reconstructed are extensively detailed.

Bio-Oil Hydrotreatment for Enhancing Solubility in Biodiesel and the Oxydation Stability of Resulting Blends.

Science.gov (United States)

Botella, Lucía; Stankovikj, Filip; Sánchez, José L; Gonzalo, Alberto; Arauzo, Jesús; Garcia-Pérez, Manuel

2018-01-01

The major challenge for the pyrolytic conversion of lignocellulosic materials into crude bio-oil is the poor quality of the final product. Several strategies (addition of solvents, production of emulsions, and extraction with biodiesel) have been studied to improve its fuel properties. The extraction with biodiesel is an interesting solution because it allows direct utilization of some bio-oil fractions as fuels. However, fraction extracted with biodiesel is typically between 10 and 18 wt. %. In this paper we studied mild hydrotreatment of pyrolysis oil to enhance its solubility in biodiesel. The study was conducted with BTG and Amaron oils hydrotreated at temperatures between 200 and 325°C in the presence of Ru/C catalyst. Hydrotreated oils generated three phases: top oil (light hydrocarbons), middle aqueous phase and bottom heavy oil phase. Each of the phases was characterized and the content of acetic acid, phenols, aromatic compounds, and linear alkane hydrocarbons quantified. The upgraded bio-oils were more soluble in biodiesel than the crude bio-oils, obtaining blends with up to 48 and 38 wt. % for the BTG and Amaron bio-oil, respectively. Some of the fuel properties of the resulting blends are also reported here.

Bio-oil Hydrotreatment for Enhancing Solubility in Biodiesel and the Oxydation Stability of Resulting Blends

Science.gov (United States)

Botella, Lucía; Stankovikj, Filip; Sánchez, José L.; Gonzalo, Alberto; Arauzo, Jesús; Garcia-Pérez, Manuel

2018-04-01

The major challenge for the pyrolytic conversion of lignocellulosic materials into crude bio-oil is the poor quality of the final product. Several strategies (addition of solvents, production of emulsions, and extraction with biodiesel) have been studied to improve its fuel properties. The extraction with biodiesel is an interesting solution because it allows direct utilization of some bio-oil fractions as fuels. However, fraction extracted with biodiesel is typically between 10 and 18 wt. %. In this paper we studied mild hydrotreatment of pyrolysis oil to enhance its solubility in biodiesel. The study was conducted with BTG and Amaron oils hydrotreated at temperatures between 200 and 325 °C in the presence of Ru/C catalyst. Hydrotreated oils generated three phases: top oil (light hydrocarbons), middle aqueous phase and bottom heavy oil phase. Each of the phases was characterized and the content of acetic acid, phenols, aromatic compounds and linear alkane hydrocarbons quantified. The upgraded bio-oils were more soluble in biodiesel than the crude bio-oils, obtaining blends with up to 48 and 38 wt. % for the BTG and Amaron bio-oil, respectively. Some of the fuel properties of the resulting blends are also reported here.

Bio-Oil Hydrotreatment for Enhancing Solubility in Biodiesel and the Oxydation Stability of Resulting Blends

Directory of Open Access Journals (Sweden)

Lucía Botella

2018-04-01

Full Text Available The major challenge for the pyrolytic conversion of lignocellulosic materials into crude bio-oil is the poor quality of the final product. Several strategies (addition of solvents, production of emulsions, and extraction with biodiesel have been studied to improve its fuel properties. The extraction with biodiesel is an interesting solution because it allows direct utilization of some bio-oil fractions as fuels. However, fraction extracted with biodiesel is typically between 10 and 18 wt. %. In this paper we studied mild hydrotreatment of pyrolysis oil to enhance its solubility in biodiesel. The study was conducted with BTG and Amaron oils hydrotreated at temperatures between 200 and 325°C in the presence of Ru/C catalyst. Hydrotreated oils generated three phases: top oil (light hydrocarbons, middle aqueous phase and bottom heavy oil phase. Each of the phases was characterized and the content of acetic acid, phenols, aromatic compounds, and linear alkane hydrocarbons quantified. The upgraded bio-oils were more soluble in biodiesel than the crude bio-oils, obtaining blends with up to 48 and 38 wt. % for the BTG and Amaron bio-oil, respectively. Some of the fuel properties of the resulting blends are also reported here.

Bio-Oil Hydrotreatment for Enhancing Solubility in Biodiesel and the Oxydation Stability of Resulting Blends

Science.gov (United States)

Botella, Lucía; Stankovikj, Filip; Sánchez, José L.; Gonzalo, Alberto; Arauzo, Jesús; Garcia-Pérez, Manuel

2018-01-01

The major challenge for the pyrolytic conversion of lignocellulosic materials into crude bio-oil is the poor quality of the final product. Several strategies (addition of solvents, production of emulsions, and extraction with biodiesel) have been studied to improve its fuel properties. The extraction with biodiesel is an interesting solution because it allows direct utilization of some bio-oil fractions as fuels. However, fraction extracted with biodiesel is typically between 10 and 18 wt. %. In this paper we studied mild hydrotreatment of pyrolysis oil to enhance its solubility in biodiesel. The study was conducted with BTG and Amaron oils hydrotreated at temperatures between 200 and 325°C in the presence of Ru/C catalyst. Hydrotreated oils generated three phases: top oil (light hydrocarbons), middle aqueous phase and bottom heavy oil phase. Each of the phases was characterized and the content of acetic acid, phenols, aromatic compounds, and linear alkane hydrocarbons quantified. The upgraded bio-oils were more soluble in biodiesel than the crude bio-oils, obtaining blends with up to 48 and 38 wt. % for the BTG and Amaron bio-oil, respectively. Some of the fuel properties of the resulting blends are also reported here. PMID:29675406

Laser-optical methods and systems of computer-automated investigation of bio-objects (plants, seeds, food products, and others)

Science.gov (United States)

Lisker, Joseph S.

1999-01-01

A new conception of the scientific problem of information exchange in the system plant-man-environment is developed. The laser-optical methods and the system are described which allow computer automated investigation of bio-objects without damaging their vital function. The results of investigation of optical-physiological features of plants and seeds are presented. The effects of chlorophyll well and IR beg are discovered for plants and also the effects os water pumping and protein transformations are shown for seeds. The perspectives of the use of the optical methods and equipment suggested to solve scientific problems of agriculture are discussed.

Clinical application of bio ceramics

Energy Technology Data Exchange (ETDEWEB)

Anu, Sharma, E-mail: issaranu@gmail.com; Gayatri, Sharma, E-mail: sharmagayatri@gmail.com [Department of Chemistry, Govt. College of Engineering & Technology, Bikaner, Rajasthan (India)

2016-05-06

Ceramics are the inorganic crystalline material. These are used in various field such as biomedical, electrical, electronics, aerospace, automotive and optical etc. Bio ceramics are the one of the most active areas of research. Bio ceramics are the ceramics which are biocompatible. The unique properties of bio ceramics make them an attractive option for medical applications and offer some potential advantages over other materials. During the past three decades, a number of major advances have been made in the field of bio ceramics. This review focuses on the use of these materials in variety of clinical scenarios.

Clinical application of bio ceramics

International Nuclear Information System (INIS)

Anu, Sharma; Gayatri, Sharma

2016-01-01

Ceramics are the inorganic crystalline material. These are used in various field such as biomedical, electrical, electronics, aerospace, automotive and optical etc. Bio ceramics are the one of the most active areas of research. Bio ceramics are the ceramics which are biocompatible. The unique properties of bio ceramics make them an attractive option for medical applications and offer some potential advantages over other materials. During the past three decades, a number of major advances have been made in the field of bio ceramics. This review focuses on the use of these materials in variety of clinical scenarios.

Assessing the Need for an On-Line Educational Module for Volunteer Leaders on Bio-Security in Washington State 4-H Livestock Projects

Science.gov (United States)

Stevenson, Jill L.; Moore, Dale A.; Newman, Jerry; Schmidt, Janet L.; Smith, Sarah M.; Smith, Jean; Kerr, Susan; Wallace, Michael; BoyEs, Pat

2011-01-01

4-H livestock projects present disease transmission risks that can be reduced by the use of bio-security practices. The responsibility of teaching bio-security to youth belongs primarily to volunteer leaders, who may not be aware of the importance of these practices. A needs assessment for an online educational module about bio-security revealed…

Singular Strategic Project on bio climatic architecture and solar cooling (PSE-ARFRISOL); Proyecto Singular Estrategico sobre arquitectura bioclimatica y frio solar (PSE-ARFRISOL)

Energy Technology Data Exchange (ETDEWEB)

Heras Celemin, M. R.

2008-07-01

The R and D activities for the scientific-technological singular strategic Project on Bio climatic Architecture and Solar Cooling PSE-ARFRISOL are being carried out from November 2005 to December 2010. This project aims to demonstrate that bio climatic architecture and low-temperature solar energy are the appropriate basic elements for climatization of future buildings. (Author) 12 refs.

Bio-Optical Data Assimilation With Observational Error Covariance Derived From an Ensemble of Satellite Images

Science.gov (United States)

Shulman, Igor; Gould, Richard W.; Frolov, Sergey; McCarthy, Sean; Penta, Brad; Anderson, Stephanie; Sakalaukus, Peter

2018-03-01

An ensemble-based approach to specify observational error covariance in the data assimilation of satellite bio-optical properties is proposed. The observational error covariance is derived from statistical properties of the generated ensemble of satellite MODIS-Aqua chlorophyll (Chl) images. The proposed observational error covariance is used in the Optimal Interpolation scheme for the assimilation of MODIS-Aqua Chl observations. The forecast error covariance is specified in the subspace of the multivariate (bio-optical, physical) empirical orthogonal functions (EOFs) estimated from a month-long model run. The assimilation of surface MODIS-Aqua Chl improved surface and subsurface model Chl predictions. Comparisons with surface and subsurface water samples demonstrate that data assimilation run with the proposed observational error covariance has higher RMSE than the data assimilation run with "optimistic" assumption about observational errors (10% of the ensemble mean), but has smaller or comparable RMSE than data assimilation run with an assumption that observational errors equal to 35% of the ensemble mean (the target error for satellite data product for chlorophyll). Also, with the assimilation of the MODIS-Aqua Chl data, the RMSE between observed and model-predicted fractions of diatoms to the total phytoplankton is reduced by a factor of two in comparison to the nonassimilative run.

Functional mesoporous silica nanoparticles for bio-imaging applications.

Science.gov (United States)

Cha, Bong Geun; Kim, Jaeyun

2018-03-22

Biomedical investigations using mesoporous silica nanoparticles (MSNs) have received significant attention because of their unique properties including controllable mesoporous structure, high specific surface area, large pore volume, and tunable particle size. These unique features make MSNs suitable for simultaneous diagnosis and therapy with unique advantages to encapsulate and load a variety of therapeutic agents, deliver these agents to the desired location, and release the drugs in a controlled manner. Among various clinical areas, nanomaterials-based bio-imaging techniques have advanced rapidly with the development of diverse functional nanoparticles. Due to the unique features of MSNs, an imaging agent supported by MSNs can be a promising system for developing targeted bio-imaging contrast agents with high structural stability and enhanced functionality that enable imaging of various modalities. Here, we review the recent achievements on the development of functional MSNs for bio-imaging applications, including optical imaging, magnetic resonance imaging (MRI), positron emission tomography (PET), computed tomography (CT), ultrasound imaging, and multimodal imaging for early diagnosis. With further improvement in noninvasive bio-imaging techniques, the MSN-supported imaging agent systems are expected to contribute to clinical applications in the future. This article is categorized under: Diagnostic Tools > In vivo Nanodiagnostics and Imaging Nanotechnology Approaches to Biology > Nanoscale Systems in Biology. © 2018 Wiley Periodicals, Inc.

Mechanical and optical characterization of bio-nanocomposite from pineapple leaf fiber material for food packaging

Science.gov (United States)

Nikmatin, Siti; Rudwiyanti, Jerry R.; Prasetyo, Kurnia W.; Yedi, Dwi A.

2015-01-01

The utilization of Bio-nanocomposite material that was derived from pineapple leaf fiber as filler and tapioca starch with plasticizer glycerol as a matrix for food packaging can reduce the use of plastic that usually was made from petroleum materials. It is important to develop and producethis environmental friendly plastic because of limited availability of petroleum nowadays. The process of synthesize and characterization tapioca starch with the plasticizer glycerol bionanocomposites using print method had been conducted. There were 3 samples with different filler concentration variation; 3%, 4% and 5%.The results of mechanical test from each sample showed that bio-nanocomposite with 5% filler concentration was the optimum sample with 4.6320 MPa for tensile strength test and 24.87% for the elongation test. Based on the result of optical test for each sample was gained that along with the increasing of concentration filler would make the absorbance value of the sample became decreased, bio-nanocomposite with 5% filler concentration had several peaks with low absorbance values. The first peak was in 253 nm of wavelength regionwith absorbance of 0.131%, and the second peak was in 343 nmwavelength region and absorbance was 0.087%.

Bio-active molecules modified surfaces enhanced mesenchymal stem cell adhesion and proliferation

International Nuclear Information System (INIS)

Mobasseri, Rezvan; Tian, Lingling; Soleimani, Masoud; Ramakrishna, Seeram; Naderi-Manesh, Hossein

2017-01-01

Surface modification of the substrate as a component of in vitro cell culture and tissue engineering, using bio-active molecules including extracellular matrix (ECM) proteins or peptides derived ECM proteins can modulate the surface properties and thereby induce the desired signaling pathways in cells. The aim of this study was to evaluate the behavior of human bone marrow mesenchymal stem cells (hBM-MSCs) on glass substrates modified with fibronectin (Fn), collagen (Coll), RGD peptides (RGD) and designed peptide (R-pept) as bio-active molecules. The glass coverslips were coated with fibronectin, collagen, RGD peptide and R-peptide. Bone marrow mesenchymal stem cells were cultured on different substrates and the adhesion behavior in early incubation times was investigated using scanning electron microscopy (SEM) and confocal microscopy. The MTT assay was performed to evaluate the effect of different bio-active molecules on MSCs proliferation rate during 24 and 72 h. Formation of filopodia and focal adhesion (FA) complexes, two steps of cell adhesion process, were observed in MSCs cultured on bio-active molecules modified coverslips, specifically in Fn coated and R-pept coated groups. SEM image showed well adhesion pattern for MSCs cultured on Fn and R-pept after 2 h incubation, while the shape of cells cultured on Coll and RGD substrates indicated that they might experience stress condition in early hours of culture. Investigation of adhesion behavior, as well as proliferation pattern, suggests R-peptide as a promising bio-active molecule to be used for surface modification of substrate in supporting and inducing cell adhesion and proliferation. - Highlights: • Bioactive molecules modified surface is a strategy to design biomimicry scaffold. • Bi-functional Tat-derived peptide (R-pept) enhanced MSCs adhesion and proliferation. • R-pept showed similar influences to fibronectin on FA formation and attachment.

BioSPICE: access to the most current computational tools for biologists.

Science.gov (United States)

Garvey, Thomas D; Lincoln, Patrick; Pedersen, Charles John; Martin, David; Johnson, Mark

2003-01-01

The goal of the BioSPICE program is to create a framework that provides biologists access to the most current computational tools. At the program midpoint, the BioSPICE member community has produced a software system that comprises contributions from approximately 20 participating laboratories integrated under the BioSPICE Dashboard and a methodology for continued software integration. These contributed software modules are the BioSPICE Dashboard, a graphical environment that combines Open Agent Architecture and NetBeans software technologies in a coherent, biologist-friendly user interface. The current Dashboard permits data sources, models, simulation engines, and output displays provided by different investigators and running on different machines to work together across a distributed, heterogeneous network. Among several other features, the Dashboard enables users to create graphical workflows by configuring and connecting available BioSPICE components. Anticipated future enhancements to BioSPICE include a notebook capability that will permit researchers to browse and compile data to support model building, a biological model repository, and tools to support the development, control, and data reduction of wet-lab experiments. In addition to the BioSPICE software products, a project website supports information exchange and community building.

Performance Characteristics of Bio-Inspired Metal Nanostructures as Surface-Enhanced Raman Scattered (SERS) Substrates.

Science.gov (United States)

Areizaga-Martinez, Hector I; Kravchenko, Ivan; Lavrik, Nickolay V; Sepaniak, Michael J; Hernández-Rivera, Samuel P; De Jesús, Marco A

2016-09-01

The fabrication of high-performance plasmonic nanomaterials for bio-sensing and trace chemical detection is a field of intense theoretical and experimental research. The use of metal-silicon nanopillar arrays as analytical sensors has been reported with reasonable results in recent years. The use of bio-inspired nanocomposite structures that follow the Fibonacci numerical architecture offers the opportunity to develop nanostructures with theoretically higher and more reproducible plasmonic fields over extended areas. The work presented here describes the nanofabrication process for a series of 40 µm × 40 µm bio-inspired arrays classified as asymmetric fractals (sunflower seeds and romanesco broccoli), bilaterally symmetric (acacia leaves and honeycombs), and radially symmetric (such as orchids and lily flowers) using electron beam lithography. In addition, analytical capabilities were evaluated using surface-enhanced Raman scattering (SERS). The substrate characterization and SERS performance of the developed substrates as the strategies to assess the design performance are presented and discussed. © The Author(s) 2016.

Project BioLex. Final report

Energy Technology Data Exchange (ETDEWEB)

Dahl, J.; Broechner Andersen, M.; FORCE Technology

2007-01-15

The usage of biomass as a renewable source of energy is an important issue for a sustainable energy supply in Denmark. Due to pioneering work, Denmark has great experience in producing energy from biomass both in large scale CHP utilities as well as in small scale application such as domestic heating. This experience has been mainly focused in the usage of traditional domestic solid biomass fuels such as wood. However, the limited amounts available of these fuels and thereby following increasing prices have triggered the interest in using other sources of biomass. Rest and waste products from the agricultural industry is one examples of biomass which has a large potential to be used as a cheap biomass fuels. Projects of using these new types of biomass fuels are often hindered by insecurity whether this new biomass source can be applied as fuel or not. Thus in order to support usage of new sources of biomass a first step is to have knowledge on properties of the biomass fuel and be able to compare these to the known traditional fuels used. The BioLex was designed to provide this information about important properties of both traditional Danish as well as new more exotic solid biomass fuels in a database available to the public via the internet. (au)

Capture of atmospheric CO2 into (BiO)2CO3/graphene or graphene oxide nanocomposites with enhanced photocatalytic performance

International Nuclear Information System (INIS)

Zhang, Wendong; Dong, Fan; Zhang, Wei

2015-01-01

Graphical abstract: Self-assembly of (BiO) 2 CO 3 nanoflakes on graphene and graphene oxide nanosheets were realized by a one-pot efficient capture of atmospheric CO 2 at room temperature. - Highlights: • A facile one-step method was developed for graphene-based composites. • The synthesis was conducted by utilization of atmospheric CO 2 . • (BiO) 2 CO 3 -graphene and (BiO) 2 CO 3 -graphene oxide composites were synthesized. • The nanocomposites exhibited enhanced photocatalytic activity. - Abstract: Self-assembly of (BiO) 2 CO 3 nanoflakes on graphene (Ge) and graphene oxide (GO) nanosheets, as an effective strategy to improve the photocatalytic performance of two-dimensional (2D) nanostructured materials, were realized by a one-pot efficient capture of atmospheric CO 2 at room temperature. The as-synthesized samples were characterized by XRD, SEM, TEM, XPS, UV–vis DRS, Time-resolved ns-level PL and BET-BJH measurement. The photocatalytic activity of the obtained samples was evaluated by the removal of NO at the indoor air level under simulated solar-light irradiation. Compared with pure (BiO) 2 CO 3 , (BiO) 2 CO 3 /Ge and (BiO) 2 CO 3 /GO nanocomposites exhibited enhanced photocatalytic activity due to their large surface areas and pore volume, and efficient charge separation and transfer. The present work could provide a simple method to construct 2D nanocomposites by efficient utilization of CO 2 in green synthetic strategy.

Collective commitment for local bio energy projects. Motives and experiences of the initiators: An interview study of German renewable energy projects; Kollektives Engagement fuer kommunale Bioenergieprojekte. Motive und Erfahrungen der Initiatoren: Eine Interviewstudie deutschlandweiter erneuerbarer Energieprojekte

Energy Technology Data Exchange (ETDEWEB)

Rehatschek, Anja

2009-07-01

With the help of a sustainable power production, local bio energy projects connect ecological, economic and social solutions for the climate protection and the environment protection, for the support of the agriculture and forestry as well as for living together in the rural area. Past investigations concern primarily consider the collective commitment and the effects of such projects on the population. Under this aspect, the contribution under consideration is occupied with the acting of the initiators of the bio energy projects during the management of their tasks: Which conditions and motives of the initiators affect the conversion process? Under which conditions do the initiators arrive their goal? Which cognitive abilities, strategies of motivation and experiences particularly are important? For the qualitative investigation of these questions, five initiators of German local bio energy projects were interviewed. The results of these interviews are presented by means of paradigm models. It could be shown that both the person of the initiator and the relation of the person to the environment crucially contribute to the conversion of local bio energy projects.

Resonance-enhanced optical forces between coupled photonic crystal slabs.

Science.gov (United States)

Liu, Victor; Povinelli, Michelle; Fan, Shanhui

2009-11-23

The behaviors of lateral and normal optical forces between coupled photonic crystal slabs are analyzed. We show that the optical force is periodic with displacement, resulting in stable and unstable equilibrium positions. Moreover, the forces are strongly enhanced by guided resonances of the coupled slabs. Such enhancement is particularly prominent near dark states of the system, and the enhancement effect is strongly dependent on the types of guided resonances involved. These structures lead to enhancement of light-induced pressure over larger areas, in a configuration that is directly accessible to externally incident, free-space optical beams.

Optical packet networks - conclusions from the IST DAVID project

DEFF Research Database (Denmark)

Dittmann, Lars

2004-01-01

This work outlines the result from the European research project DAVID working with optical packet switch solutions for both WAN and MAN. The project started July 2000 and has been completed successfully by the end of 2003.......This work outlines the result from the European research project DAVID working with optical packet switch solutions for both WAN and MAN. The project started July 2000 and has been completed successfully by the end of 2003....

In-situ treatment of hydrocarbons contamination through enhanced bio-remediation and two phase extraction system

International Nuclear Information System (INIS)

Aglietto, I.; Brunero Bronzin, M.

2005-01-01

analytical data. After the study of all data acquired during investigations we could select the proper technologies for site remediation but to define correctly all project data we had to implement several laboratory tests to analyse bio-remediation processes, a series of pilot test for two phase extraction and bio-venting and a pilot test to select the best product for the release of oxygen into groundwater. The collection of the necessary parameters for the implementation of full-scale treatment was carried out throughout a period of several months, both with periodical measurements and sampling and with fixed monitoring probes, in order to record the aquifer changes related to contaminant concentrations, geochemical data, etc. At the end of all the tests we proceeded first with implementation of two phase extraction system through a double line of extraction wells that cover the extension of the area interested by the presence of free phase of LNAPL. The use of this technology instead of other more common system for free product recovery, is due to the fact that two phase extraction system results in an efficient recover of LNAPL and in a low extraction of groundwater that means lower treatment costs. Another important characteristic of this technology is that while extracting oil from the water table it extracts also soil gas from subsoil enhancing hydrocarbons bio-remediation through microbial activity. The second step after the complete recover of free product was to proceed with remediation of subsoil. Bio-remediation processes, enhanced by two phase extraction application, were increased with implementation of a bio-venting system made up of two horizontal wells installed along contaminated area. The injection of air through these wells supply oxygen to subsoil providing necessary aerobic conditions for degradation of hydrocarbon compounds. The results of laboratory tests showed that it would be suitable, to further stimulate microbial activity, to supply micro

Bio-energy. Innovators talking; Bio-energie. Innovators aan het woord

Energy Technology Data Exchange (ETDEWEB)

NONE

2013-02-15

Qualitative studies have been conducted of the results of completed projects focused on energy innovation, spread over the seven themes of the top sector Energy: Energy saving in industry, Energy conservation in the built environment, Gas, Bio-energy, Smart grids, Offshore Wind, Solar PV. This provides insight into the follow-up activities and lessons of some EOS (Energy Research Subsidy) completed projects with the aim to inspire, connect and strengthen the TKIs (Topconsortia for Knowledge and Innovation) and individual companies and researchers working on energy innovation. This report concerns the research on bio-energy [Dutch] Er is een kwalitatief onderzoek uitgevoerd naar de resultaten van afgeronde projecten gericht op energie-innovatie, verdeeld over de zeven thema's van de topsector Energie: Energiebesparing in de industrie; Energiebesparing in de gebouwde omgeving; Gas; Bio-energie; Smart grids; Wind op zee; Zon-pv. Daarmee wordt inzicht gegeven in de vervolgactiviteiten en lessen van een aantal afgesloten EOS-projecten (Energie Onderzoek Subsidie) met het oog op het inspireren, verbinden en versterken van de TKI's (Topconsortia voor Kennis en Innovatie) en individuele bedrijven en onderzoekers die werken aan energie-innovatie. Dit rapport betreft het onderzoek naar bio-energie.

Bio-energy. Innovators talking; Bio-energie. Innovators aan het woord

Energy Technology Data Exchange (ETDEWEB)

NONE

2013-02-15

Qualitative studies have been conducted of the results of completed projects focused on energy innovation, spread over the seven themes of the top sector Energy: Energy saving in industry, Energy conservation in the built environment, Gas, Bio-energy, Smart grids, Offshore Wind, Solar PV. This provides insight into the follow-up activities and lessons of some EOS (Energy Research Subsidy) completed projects with the aim to inspire, connect and strengthen the TKIs (Topconsortia for Knowledge and Innovation) and individual companies and researchers working on energy innovation. This report concerns the research on bio-energy [Dutch] Er is een kwalitatief onderzoek uitgevoerd naar de resultaten van afgeronde projecten gericht op energie-innovatie, verdeeld over de zeven thema's van de topsector Energie: Energiebesparing in de industrie; Energiebesparing in de gebouwde omgeving; Gas; Bio-energie; Smart grids; Wind op zee; Zon-pv. Daarmee wordt inzicht gegeven in de vervolgactiviteiten en lessen van een aantal afgesloten EOS-projecten (Energie Onderzoek Subsidie) met het oog op het inspireren, verbinden en versterken van de TKI's (Topconsortia voor Kennis en Innovatie) en individuele bedrijven en onderzoekers die werken aan energie-innovatie. Dit rapport betreft het onderzoek naar bio-energie.

Alkaline phosphatase immobilization onto Bio-Gide(R) and Bio-Oss(R) for periodontal and bone regeneration.

NARCIS (Netherlands)

Oortgiesen, D.A.W.; Plachokova, A.S.; Geenen, C.; Meijer, G.J.; Walboomers, X.F.; Beucken, J.J.J.P van den; Jansen, J.B.M.J.

2012-01-01

AIM: To evaluate the effect of alkaline phosphatase (ALP) immobilization onto Bio-Gide((R)) in vitro, and to study the in vivo performance of ALP-enriched Bio-Gide((R)) and/or Bio-Oss((R)) with the purpose to enhance periodontal regeneration. MATERIALS AND METHODS: Alkaline phosphatase ALP was

Photoacoustic projection imaging using an all-optical detector array

Science.gov (United States)

Bauer-Marschallinger, J.; Felbermayer, K.; Berer, T.

2018-02-01

We present a prototype for all-optical photoacoustic projection imaging. By generating projection images, photoacoustic information of large volumes can be retrieved with less effort compared to common photoacoustic computed tomography where many detectors and/or multiple measurements are required. In our approach, an array of 60 integrating line detectors is used to acquire photoacoustic waves. The line detector array consists of fiber-optic MachZehnder interferometers, distributed on a cylindrical surface. From the measured variation of the optical path lengths of the interferometers, induced by photoacoustic waves, a photoacoustic projection image can be reconstructed. The resulting images represent the projection of the three-dimensional spatial light absorbance within the imaged object onto a two-dimensional plane, perpendicular to the line detector array. The fiber-optic detectors achieve a noise-equivalent pressure of 24 Pascal at a 10 MHz bandwidth. We present the operational principle, the structure of the array, and resulting images. The system can acquire high-resolution projection images of large volumes within a short period of time. Imaging large volumes at high frame rates facilitates monitoring of dynamic processes.

Comparison of bio-physical marine products from SeaWiFS, MODIS and a bio-optical model with in situ measurements from Northern European waters

Science.gov (United States)

Blondeau-Patissier, D.; Tilstone, G. H.; Martinez-Vicente, V.; Moore, G. F.

2004-09-01

In this paper, we compare bio-physical marine products from SeaWiFS, MODIS and a novel bio-optical absorption model with in situ measurements of chlorophyll-a (Chla) concentrations, total suspended material (TSM) concentrations, normalized water-leaving radiances (nLw) and absorption coefficients of coloured dissolved organic matter (aCDOM), total particulate (atotal) and phytoplankton (aphy) for 26 satellite match-ups in three Northern European seas. Cruises were undertaken in 2002 and 2003 in phytoplankton dominated open ocean waters of the Celtic Sea and optically complex waters of the Western English Channel (WEC) and North Sea. For all environments, Chla concentrations varied from 0.4 to 7.8 mg m-3, TSM from 0.2 to 6.0 mg l-1 and aCDOM at 440 nm from 0.02 to 0.30 m-1. SeaWiFS OC4v4, with the Remote Sensing Data Analysis Service (RSDAS) atmospheric correction for turbid waters, showed the most accurate retrieval of in situ Chla (RMS = 0.24; n = 26), followed by MODIS chlor_a_3 (RMS = 0.40; n = 26). This suggested that improving the atmospheric correction over optically complex waters results in more accurate Chla concentrations compared to those obtained using more complicated Chla algorithms. We found that the SeaWiFS OC4v4 and the MODIS chlor_a_2 switching band ratio algorithms, which mainly use longer wavebands than 443 nm, were less affected by CDOM. They were both more accurate than chlor_MODIS in the higher CDOM waters of the North Sea. Compared to MODIS the absorption model was better at retrieving atotal (RMS = 0.39; n = 78) and aCDOM (RMS = 0.79; n = 12) in all study areas and TSM in the WEC (RMS = 0.04; n = 10) but it underestimated Chla concentrations (RMS = 0.45; n = 26). The results are discussed in terms of atmospheric correction, sensor characteristics and the functioning and performance of Chla algorithms. This paper was presented at the Institute of Physics Meeting on Underwater Optics held during Photonex 03 at Warwick, UK, in October 2003

Decadal trends and common dynamics of the bio-optical and thermal characteristics of the African Great Lakes.

Directory of Open Access Journals (Sweden)

Steven Loiselle

Full Text Available The Great Lakes of East Africa are among the world's most important freshwater ecosystems. Despite their importance in providing vital resources and ecosystem services, the impact of regional and global environmental drivers on this lacustrine system remains only partially understood. We make a systematic comparison of the dynamics of the bio-optical and thermal properties of thirteen of the largest African lakes between 2002 and 2011. Lake surface temperatures had a positive trend in all Great Lakes outside the latitude of 0° to 8° south, while the dynamics of those lakes within this latitude range were highly sensitive to global inter-annual climate drivers (i.e. El Niño Southern Oscillation. Lake surface temperature dynamics in nearly all lakes were found to be sensitive to the latitudinal position of the Inter Tropical Convergence Zone. Phytoplankton dynamics varied considerably between lakes, with increasing and decreasing trends. Intra-lake differences in both surface temperature and phytoplankton dynamics occurred for many of the larger lakes. This inter-comparison of bio-optical and thermal dynamics provides new insights into the response of these ecosystems to global and regional drivers.

Quasistatic limit for plasmon-enhanced optical chirality

Science.gov (United States)

Finazzi, Marco; Biagioni, Paolo; Celebrano, Michele; Duò, Lamberto

2015-05-01

We discuss the possibility of enhancing the chiroptical response from molecules uniformly distributed around nanostructures that sustain localized plasmon resonances. We demonstrate that the average optical chirality in the near field of any plasmonic nanostructure cannot be significantly higher than that in a plane wave. This conclusion stems from the quasistatic nature of the nanoparticle-enhanced electromagnetic fields and from the fact that, at optical frequencies, the magnetic response of matter is much weaker than the electric one.

Chlorophyll-a concentration estimation with three bio-optical algorithms: correction for the low concentration range for the Yiam Reservoir, Korea

Science.gov (United States)

Bio-optical algorithms have been applied to monitor water quality in surface water systems. Empirical algorithms, such as Ritchie (2008), Gons (2008), and Gilerson (2010), have been applied to estimate the chlorophyll-a (chl-a) concentrations. However, the performance of each algorithm severely degr...

BioSentinel

Data.gov (United States)

National Aeronautics and Space Administration — The Advanced Exploration Systems' (AES) BioSentinel project will develop, prototype, integrate, test, and prepare for the first spaceflight mission of a broadly...

Bio-optical characterization in an ultra-oligotrophic region: the North central Red Sea

KAUST Repository

Kheireddine, Malika

2015-04-01

Until recently, satellite-derived ocean color observations have been the only means of evaluating optical variability of the Red Sea. During a cruise in autumn 2014, we investigated the variability of Inherent Optical Properties (IOPs) in the North Central Red Sea (NCRS) with a particular focus on the particulate backscattering coefficient, bbp, and colored dissolved organic matter, CDOM, absorption. To our knowledge, these are some of the measurements of these properties in the Red Sea. The IOPs are derived from the concentration and physical properties of suspended particles in the ocean. They provide a simple description of the influence of these particles on the light within the water column. Bio-optical relationships found for ultra-oligotrophic waters of the six stations sampled significantly depart from the mean standard relationships provided for the global ocean, showing the peculiar character of the Red Sea. These optical anomalies relate to the specific biological and environmental conditions occurring in the Red Sea ecosystem. Specifically, the surface specific phytoplankton absorption coefficients are lower than the values predicted from the global relationships due to a high proportion of relatively large sized phytoplankton. Conversely, bbp values are much higher than the mean standard values for a given chlorophyll-a concentration, Chl a. This presumably results from the influence of highly refractive submicrometer particles of Saharan origin in the surface layer of the water column.

Fe(Ⅲ) ions enhanced catalytic properties of (BiO)2CO3 nanowires and mechanism study for complete degradation of xanthate.

Science.gov (United States)

Guo, Yujiao; Cui, Kuixin; Hu, Mingyi; Jin, Shengming

2017-08-01

The wire-like Fe 3+ -doped (BiO) 2 CO 3 photocatalyst was synthesized by a hydrothermal method. The photocatalytic property of Fe 3+ -doped (BiO) 2 CO 3 nanowires was evaluated through degradation of sodium isopropyl xanthate under UV-visible light irradiation. The as-prepared Fe 3+ -doped (BiO) 2 CO 3 nanowires were characterized by X-ray diffraction (XRD), scanning electron microscope (SEM), UV-visible diffuse reflectance spectroscopy (UV-vis DRS), X-ray photoelectron spectroscopy (XPS) and Fourier transform infrared spectroscopy (FTIR) in detail. The results of XRD showed that the crystallinity of (BiO) 2 CO 3 nanowires decreased when Fe 3+ ions were introduced into the solution system. XPS results illustrated that xanthate could be absorbed on the surface of Fe 3+ -doped (BiO) 2 CO 3 nanowires to produce BiS bond at the beginning of the reaction, which could broaden the visible light absorption. FTIR spectra confirmed the formation of SO 4 2- after photocatalytic decomposition of xanthate solution. The Fe 3+ -doped (BiO) 2 CO 3 nanowires showed an enhanced photocatalytic activity for decomposition of xanthate due to the narrower band gap and larger BET surface area, comparing with pure (BiO) 2 CO 3 nanowires. By the results of UV-vis spectra of the solution and FTIR spectra of recycled Fe 3+ -doped (BiO) 2 CO 3 , the xanthate was oxidized completely into CO 2 and SO 4 2- . The photocatalytic degradation process of xanthate followed a pseudo-second-order kinetics model. The mechanism of enhanced photocatalytic activity was proposed as well. Copyright © 2017 Elsevier Ltd. All rights reserved.

AN OPTICAL CHARACTER RECOGNITION RESEARCH AND DEMONSTRATION PROJECT.

Science.gov (United States)

1968

RESEARCH AND DEVELOPMENT OF PROTOTYPE LIBRARY SYSTEMS WHICH UTILIZE OPTICAL CHARACTER RECOGNITION INPUT HAS CENTERED AROUND OPTICAL PAGE READERS AND DOCUMENT READERS. THE STATE-OF-THE-ART OF BOTH THESE OPTICAL SCANNERS IS SUCH THAT BOTH ARE ACCEPTABLE FOR LIBRARY INPUT PREPARATION. A DEMONSTRATION PROJECT UTILIZING THE TWO TYPES OF READERS, SINCE…

Bio-Conjugates for Nanoscale Applications

DEFF Research Database (Denmark)

Villadsen, Klaus

Bio-conjugates for Nanoscale Applications is the title of this thesis, which covers three different projects in chemical bio-conjugation research, namely synthesis and applications of: Lipidated fluorescent peptides, carbohydrate oxime-azide linkers and N-aryl O-R2 oxyamine derivatives. Lipidated...

Bio-optical data integration based on a 4 D database system approach

Science.gov (United States)

Imai, N. N.; Shimabukuro, M. H.; Carmo, A. F. C.; Alcantara, E. H.; Rodrigues, T. W. P.; Watanabe, F. S. Y.

2015-04-01

Bio-optical characterization of water bodies requires spatio-temporal data about Inherent Optical Properties and Apparent Optical Properties which allow the comprehension of underwater light field aiming at the development of models for monitoring water quality. Measurements are taken to represent optical properties along a column of water, and then the spectral data must be related to depth. However, the spatial positions of measurement may differ since collecting instruments vary. In addition, the records should not refer to the same wavelengths. Additional difficulty is that distinct instruments store data in different formats. A data integration approach is needed to make these large and multi source data sets suitable for analysis. Thus, it becomes possible, even automatically, semi-empirical models evaluation, preceded by preliminary tasks of quality control. In this work it is presented a solution, in the stated scenario, based on spatial - geographic - database approach with the adoption of an object relational Database Management System - DBMS - due to the possibilities to represent all data collected in the field, in conjunction with data obtained by laboratory analysis and Remote Sensing images that have been taken at the time of field data collection. This data integration approach leads to a 4D representation since that its coordinate system includes 3D spatial coordinates - planimetric and depth - and the time when each data was taken. It was adopted PostgreSQL DBMS extended by PostGIS module to provide abilities to manage spatial/geospatial data. It was developed a prototype which has the mainly tools an analyst needs to prepare the data sets for analysis.

Photoluminescence and nonlinear optical phenomena in plasmonic random media—A review of recent works

International Nuclear Information System (INIS)

Araújo, Cid B. de; Kassab, Luciana R.P.; Tolentino Dominguez, C.; Ribeiro, Sidney J.L.; Gomes, Anderson S.L.; Reyna, Albert S.

2016-01-01

Photoluminescence properties and nonlinear optical response of metal–dielectric nanocomposites (MDNCs)—germanate glasses, bio-cellulose membranes and colloids containing either silver (Ag) or gold (Au) nanoparticles (NPs)—are reviewed. The phenomena discussed are: i. the photoluminescence enhancement observed from rare-earth doped PbO–GeO 2 glass containing Ag NPs; ii. optical amplification at 1530 nm in RIB waveguides made with PbO–GeO 2 thin films covered with Au NPs; iii. Random Laser emission from a bio-cellulose membrane infiltrated with Rhodamine 6G and containing Ag NPs; iv. the nonlinearity management of high-order processes in colloids containing Ag NPs suspended in acetone. In all discussed cases the influence of the metallic NPs is clearly demonstrated and a procedure to control the nonlinear propagation of light beams in heterogeneous media is presented. - Highlights: • Large photoluminescence enhancement observed from rare-earth doped PbO–GeO 2 glass containing Ag NPs. • Optical amplification at 1530 nm in RIB waveguides made with PbO–GeO 2 thin films covered with Au NPs. • Random Laser emission from a bio-cellulose membrane infiltrated with Rhodamine 6G and containing Ag NPs. • The nonlinearity management of high-order processes in liquid colloids containing Ag NPs.

Photoluminescence and nonlinear optical phenomena in plasmonic random media—A review of recent works

Energy Technology Data Exchange (ETDEWEB)

Araújo, Cid B. de, E-mail: cid@df.ufpe.br [Departamento de Física , Universidade Federal de Pernambuco, 50670-901 Recife , PE (Brazil); Kassab, Luciana R.P. [Faculdade de Tecnologia de São Paulo (FATEC-SP , CEETEPS), 01124-060 São Paulo , SP (Brazil); Tolentino Dominguez, C. [Laboratório de Óptica Biomédica e Imagem , Universidade Federal de Pernambuco , Recife 50740-530, PE (Brazil); Ribeiro, Sidney J.L. [Institute of Chemistry , São Paulo State University (UNESP), 14801-970 Araraquara , SP (Brazil); Gomes, Anderson S.L.; Reyna, Albert S. [Departamento de Física , Universidade Federal de Pernambuco, 50670-901 Recife , PE (Brazil)

2016-01-15

Photoluminescence properties and nonlinear optical response of metal–dielectric nanocomposites (MDNCs)—germanate glasses, bio-cellulose membranes and colloids containing either silver (Ag) or gold (Au) nanoparticles (NPs)—are reviewed. The phenomena discussed are: i. the photoluminescence enhancement observed from rare-earth doped PbO–GeO{sub 2} glass containing Ag NPs; ii. optical amplification at 1530 nm in RIB waveguides made with PbO–GeO{sub 2} thin films covered with Au NPs; iii. Random Laser emission from a bio-cellulose membrane infiltrated with Rhodamine 6G and containing Ag NPs; iv. the nonlinearity management of high-order processes in colloids containing Ag NPs suspended in acetone. In all discussed cases the influence of the metallic NPs is clearly demonstrated and a procedure to control the nonlinear propagation of light beams in heterogeneous media is presented. - Highlights: • Large photoluminescence enhancement observed from rare-earth doped PbO–GeO{sub 2} glass containing Ag NPs. • Optical amplification at 1530 nm in RIB waveguides made with PbO–GeO{sub 2} thin films covered with Au NPs. • Random Laser emission from a bio-cellulose membrane infiltrated with Rhodamine 6G and containing Ag NPs. • The nonlinearity management of high-order processes in liquid colloids containing Ag NPs.

Project in fiscal 1988 for research and development of basic technologies in next generation industries. Achievement report on research and development of bio-reactors; 1988 nendo bio reactor no kenkyu kaihatsu seika hokokusho

Energy Technology Data Exchange (ETDEWEB)

NONE

1989-03-01

Research and development has been performed on bio-reactors to substitute the oxidizing reaction process, and on reduction reacting bio-reactors to fix the coenzyme regeneration system. This paper summarizes the achievements in fiscal 1988. In the research of a bio-reactor using bacteria that produce muconic acid from benzoic acid, stable productivity of 60 g/L/day or more was obtained. In the research of a multi-phase based bio-reactor composed of air, oil, water and biomass, discussions were given on the phase inverting film permeation type reactor. In the research of a bio-reactor to produce acetic acid from carbon dioxide and hydrogen, productivity of 149 g/L/day as maximum was achieved by enhancing the production speed by means of pressurization. In the research of a bio-reactor to produce hydroquinone from phenol, up-keeping the duration for 100 hours or longer has become possible at the hydroquinone production speed of 3 g/L/h. In the research of a reduction-based bio-reactor incorporating the regeneration system of coenzyme NAD(P)H, discussions were given on optimizing the continuous enzymatic reaction in the production of sorbitol. (NEDO)

Nanogap embedded silver gratings for surface plasmon enhanced fluorescence

Science.gov (United States)

Bhatnagar, Kunal

Plasmonic nanostructures have been extensively used in the past few decades for applications in sub-wavelength optics, data storage, optoelectronic circuits, microscopy and bio-photonics. The enhanced electromagnetic field produced at the metal and dielectric interface by the excitation of surface plasmons via incident radiation can be used for signal enhancement in fluorescence and surface enhanced Raman scattering studies. Novel plasmonic structures have shown to provide very efficient and extreme light concentration at the nano-scale in recent years. The enhanced electric field produced within a few hundred nanometers of these surfaces can be used to excite fluorophores in the surrounding environment. Fluorescence based bio-detection and bio-imaging are two of the most important tools in the life sciences and improving the qualities and capabilities of fluorescence based detectors and imaging equipment remains a big challenge for industry manufacturers. We report a novel fabrication technique for producing nano-gap embedded periodic grating substrates on the nanoscale using a store bought HD-DVD and conventional soft lithography procedures. Polymethylsilsesquioxane (PMSSQ) polymer is used as the ink for the micro-contact printing process with PDMS stamps obtained from the inexpensive HD-DVDs as master molds. Fluorescence enhancement factors of up to 118 times were observed with these silver nanostructures in conjugation with Rhodamine-590 fluorescent dye. These substrates are ideal candidates for a robust and inexpensive optical system with applications such as low-level fluorescence based analyte detection, single molecule imaging, and surface enhanced Raman studies. Preliminary results in single molecule experiments have also been obtained by imaging individual 3 nm and 20 nm dye-doped nanoparticles attached to the silver plasmonic gratings using epi-fluorescence microscopy.

Enhanced Bio-hydrogen Production from Protein Wastewater by Altering Protein Structure and Amino Acids Acidification Type

Science.gov (United States)

Xiao, Naidong; Chen, Yinguang; Chen, Aihui; Feng, Leiyu

2014-01-01

Enhanced bio-hydrogen production from protein wastewater by altering protein structure and amino acids acidification type via pH control was investigated. The hydrogen production reached 205.2 mL/g-protein when protein wastewater was pretreated at pH 12 and then fermented at pH 10. The mechanism studies showed that pH 12 pretreatment significantly enhanced protein bio-hydrolysis during the subsequent fermentation stage as it caused the unfolding of protein, damaged the protein hydrogen bonding networks, and destroyed the disulfide bridges, which increased the susceptibility of protein to protease. Moreover, pH 10 fermentation produced more acetic but less propionic acid during the anaerobic fermentation of amino acids, which was consistent with the theory of fermentation type affecting hydrogen production. Further analyses of the critical enzymes, genes, and microorganisms indicated that the activity and abundance of hydrogen producing bacteria in the pH 10 fermentation reactor were greater than those in the control. PMID:24495932

Enhanced bio-hydrogen production from protein wastewater by altering protein structure and amino acids acidification type.

Science.gov (United States)

Xiao, Naidong; Chen, Yinguang; Chen, Aihui; Feng, Leiyu

2014-02-05

Enhanced bio-hydrogen production from protein wastewater by altering protein structure and amino acids acidification type via pH control was investigated. The hydrogen production reached 205.2 mL/g-protein when protein wastewater was pretreated at pH 12 and then fermented at pH 10. The mechanism studies showed that pH 12 pretreatment significantly enhanced protein bio-hydrolysis during the subsequent fermentation stage as it caused the unfolding of protein, damaged the protein hydrogen bonding networks, and destroyed the disulfide bridges, which increased the susceptibility of protein to protease. Moreover, pH 10 fermentation produced more acetic but less propionic acid during the anaerobic fermentation of amino acids, which was consistent with the theory of fermentation type affecting hydrogen production. Further analyses of the critical enzymes, genes, and microorganisms indicated that the activity and abundance of hydrogen producing bacteria in the pH 10 fermentation reactor were greater than those in the control.

A biomechanical modeling-guided simultaneous motion estimation and image reconstruction technique (SMEIR-Bio) for 4D-CBCT reconstruction

Science.gov (United States)

Huang, Xiaokun; Zhang, You; Wang, Jing

2018-02-01

Reconstructing four-dimensional cone-beam computed tomography (4D-CBCT) images directly from respiratory phase-sorted traditional 3D-CBCT projections can capture target motion trajectory, reduce motion artifacts, and reduce imaging dose and time. However, the limited numbers of projections in each phase after phase-sorting decreases CBCT image quality under traditional reconstruction techniques. To address this problem, we developed a simultaneous motion estimation and image reconstruction (SMEIR) algorithm, an iterative method that can reconstruct higher quality 4D-CBCT images from limited projections using an inter-phase intensity-driven motion model. However, the accuracy of the intensity-driven motion model is limited in regions with fine details whose quality is degraded due to insufficient projection number, which consequently degrades the reconstructed image quality in corresponding regions. In this study, we developed a new 4D-CBCT reconstruction algorithm by introducing biomechanical modeling into SMEIR (SMEIR-Bio) to boost the accuracy of the motion model in regions with small fine structures. The biomechanical modeling uses tetrahedral meshes to model organs of interest and solves internal organ motion using tissue elasticity parameters and mesh boundary conditions. This physics-driven approach enhances the accuracy of solved motion in the organ’s fine structures regions. This study used 11 lung patient cases to evaluate the performance of SMEIR-Bio, making both qualitative and quantitative comparisons between SMEIR-Bio, SMEIR, and the algebraic reconstruction technique with total variation regularization (ART-TV). The reconstruction results suggest that SMEIR-Bio improves the motion model’s accuracy in regions containing small fine details, which consequently enhances the accuracy and quality of the reconstructed 4D-CBCT images.

Green bio-oil extraction for oil crops

Science.gov (United States)

Zainab, H.; Nurfatirah, N.; Norfaezah, A.; Othman, H.

2016-06-01

The move towards a green bio-oil extraction technique is highlighted in this paper. The commonly practised organic solvent oil extraction technique could be replaced with a modified microwave extraction. Jatropha seeds (Jatropha curcas) were used to extract bio-oil. Clean samples were heated in an oven at 110 ° C for 24 hours to remove moisture content and ground to obtain particle size smaller than 500μm. Extraction was carried out at different extraction times 15 min, 30 min, 45 min, 60 min and 120 min to determine oil yield. The biooil yield obtained from microwave assisted extraction system at 90 minutes was 36% while that from soxhlet extraction for 6 hours was 42%. Bio-oil extracted using the microwave assisted extraction (MAE) system could enhance yield of bio-oil compared to soxhlet extraction. The MAE extraction system is rapid using only water as solvent which is a nonhazardous, environment-friendly technique compared to soxhlet extraction (SE) method using hexane as solvent. Thus, this is a green technique of bio-oil extraction using only water as extractant. Bio-oil extraction from the pyrolysis of empty fruit bunch (EFB), a biomass waste from oil palm crop, was enhanced using a biocatalyst derived from seashell waste. Oil yield for non-catalytic extraction was 43.8% while addition of seashell based biocatalyst was 44.6%. Oil yield for non-catalytic extraction was 43.8% while with addition of seashell-based biocatalyst was 44.6%. The pH of bio-oil increased from 3.5 to 4.3. The viscosity of bio-oil obtained by catalytic means increased from 20.5 to 37.8 cP. A rapid and environment friendly extraction technique is preferable to enhance bio-oil yield. The microwave assisted approach is a green, rapid and environmental friendly extraction technique for the production of bio-oil bearing crops.

Bio-oil and bio-char production from corn cobs and stover by fast pyrolysis

International Nuclear Information System (INIS)

Mullen, Charles A.; Boateng, Akwasi A.; Goldberg, Neil M.; Lima, Isabel M.; Laird, David A.; Hicks, Kevin B.

2010-01-01

Bio-oil and bio-char were produced from corn cobs and corn stover (stalks, leaves and husks) by fast pyrolysis using a pilot scale fluidized bed reactor. Yields of 60% (mass/mass) bio-oil (high heating values are ∼20 MJ kg -1 , and densities >1.0 Mg m -3 ) were realized from both corn cobs and from corn stover. The high energy density of bio-oil, ∼20-32 times on a per unit volume basis over the raw corn residues, offers potentially significant savings in transportation costs particularly for a distributed 'farm scale' bio-refinery system. Bio-char yield was 18.9% and 17.0% (mass/mass) from corn cobs and corn stover, respectively. Deploying the bio-char co-product, which contains most of the nutrient minerals from the corn residues, as well as a significant amount of carbon, to the land can enhance soil quality, sequester carbon, and alleviate environmental problems associated with removal of crop residues from fields.

HYDRODYNAMICS AND BIO-OPTICAL ASSESSMENT OF TWO PRISTINE SUBTROPICAL ESTUARIES IN SOUTHERN BRAZIL

Directory of Open Access Journals (Sweden)

Mauricio Almeida Noernberg

2014-12-01

Full Text Available Measuring small-scale physical processes and how they affect the spatial patterns of sea water's optical constituents plays a key role in understanding the functioning of complex coastal ecosystems such as estuaries. The spatial variations of physical and bio-optical water properties were investigated during one spring tidal cycle in austral summer, on two transects across the channel of the Medeiros and Itaqui sub-estuaries. These sub-estuaries are a biosphere reserve, and part of the Paranaguá Estuarine System, located on the Southern Brazilian coast. Both sub-estuaries were classified as Type 1a, wellmixed with low stratification. The salinity variations are in phase with the water level, and the tidal propagation is well represented by a standing wave. The vertical velocity profiles showed little vertical shear, and the intensity of the u-component of the velocity varied semi-diurnally. The upper estuary salt transport was dominated by tidal diffusion in an unstable water column. The optical environment presented a mixed dominance of optically active substances, as indicated by the absorption coefficients of dissolved and particulate matter. The colored dissolved organic matter (CDOM showed overall conservative behavior and was dominant in light absorption below 550 nm in the Medeiros, while nonalgal particles play the most important role in light absorption in the Itaqui in the blue absorption band. The phytoplanktonic contribution is prominent in the red domain and increases as a function of saline intrusion. However, due to the influence of freshwater discharge and the re-suspension of bottom sediments induced by physical processes, the concentrations of the optical components in the water column do not generally have any simple relationships between them.

Hot Springs-Garrison Fiber Optic Project

International Nuclear Information System (INIS)

1994-10-01

Bonneville Power Administration (BPA) is proposing to upgrade its operational telecommunications system between the Hot Springs Substation and the Garrison Substation using a fiber optic system. The project would primarily involve installing 190 kilometers (120 miles) of fiber optic cable on existing transmission structures and installing new fiber optic equipment in BPA's substation yards and control houses. BPA prepared an environmental assessment (EA) evaluating the proposed action. This EA was published in October 1994. The EA identifies a number of minor impacts that might occur as a result of the proposed action, as well as some recommended mitigation measures. This Mitigation Action Plan (MAP) identifies specific measures to avoid, minimize, or compensate for impacts identified in the EA

Hot Springs-Garrison Fiber Optic Project

Energy Technology Data Exchange (ETDEWEB)

1994-10-01

Bonneville Power Administration (BPA) is proposing to upgrade its operational telecommunications system between the Hot Springs Substation and the Garrison Substation using a fiber optic system. The project would primarily involve installing 190 kilometers (120 miles) of fiber optic cable on existing transmission structures and installing new fiber optic equipment in BPA`s substation yards and control houses. BPA prepared an environmental assessment (EA) evaluating the proposed action. This EA was published in October 1994. The EA identifies a number of minor impacts that might occur as a result of the proposed action, as well as some recommended mitigation measures. This Mitigation Action Plan (MAP) identifies specific measures to avoid, minimize, or compensate for impacts identified in the EA.

Biochemical gas sensor (bio-sniffer) for ultrahigh-sensitive gaseous formaldehyde monitoring.

Science.gov (United States)

Kudo, Hiroyuki; Suzuki, Yuki; Gessei, Tomoko; Takahashi, Daishi; Arakawa, Takahiro; Mitsubayashi, Kohji

2010-10-15

An ultrahigh-sensitive fiber-optic biochemical gas sensor (bio-sniffer) for continuous monitoring of indoor formaldehyde was constructed and tested. The bio-sniffer measures gaseous formaldehyde as fluorescence of nicotinamide adenine dinucleotide (NADH), which is the product of formaldehyde dehydrogenase (FALDH) reaction. The bio-sniffer device was constructed by attaching a flow cell with a FALDH immobilized membrane onto a fiber-optic NADH measurement system. The NADH measurement system utilizes an ultraviolet-light emitting diode (UV-LED) with peak emission of 335 nm as an excitation light source. The excitation light was introduced to an optical fiber probe, and fluorescence emission of neighboring NADH, which was produced by applying formaldehyde vapor to the FALDH membrane, was concentrically measured with a photomultiplier tube. Assessment of the bio-sniffer was carried out using a standard gas generator. Response, calibration range and selectivity to other chemical substances were investigated. Circulating phosphate buffer, which contained NAD+, available for continuous monitoring of formaldehyde vapor. The calibration range of the bio-sniffer was 2.5 ppb to 10 ppm, which covers the guideline value of the World Health Organization (80 ppb). High selectivity to other gaseous substances due to specific activity of FALDH was also confirmed. Considering its high sensitivity, a possible application of the bio-sniffer is continuous indoor formaldehyde monitoring to provide healthy residential atmosphere. Copyright © 2010 Elsevier B.V. All rights reserved.

Bio nitrate Project: a new technology for water nitrate elimination by means of ionic exchange resins

International Nuclear Information System (INIS)

Arellano Ortiz, J.

2009-01-01

The use of ion exchange resins for nitrate elimination from water generates a waste containing a sodium chloride mixture plus the retained nitrates. this waste must be correctly disposed. In this project, the resin ionic form is modified to be regenerated with other compounds, different from the common salt, which are interesting because of the presence of mineral nutrition. So, with Bio nitrate Project, nitrates are recovered and the regeneration waste is apt to be use as fertilizer, for agricultural uses, or as complementary contribution of nutrients in biological water treatment. (Author) 27 refs.

Cognitive, Heterogeneous and Reconfigurable Optical Networks: The CHRON Project

DEFF Research Database (Denmark)

Caballero Jambrina, Antonio; Borkowski, Robert; de Miguel, Ignacio

2014-01-01

. The incorporation of cognitive techniques can help to optimize a network by employing mechanisms that can observe, act, learn and improve network performance, taking into account end-to-end goals. The EU project CHRON: Cognitive Heterogeneous Reconfigurable Optical Network proposes a strategy to efficiently control...... the network by implementing cognition. In this paper we present a survey of different techniques developed throughout the course of the project to apply cognition in future optical networks....

Fabrication, modification and application of (BiO)_2CO_3-based photocatalysts: A review

International Nuclear Information System (INIS)

Ni, Zilin; Sun, Yanjuan; Zhang, Yuxin; Dong, Fan

2016-01-01

Graphical abstract: - Highlights: • The (BiO)_2CO_3 with Aurivillius structure y is an emergent material. • Synthesis of (BiO)_2CO_3 micro/nano structures was reviewed. • The mechanisms of (BiO)_2CO_3 based nanocomposites were discussed. • Doping (BiO)_2CO_3 with nonmetals for enhanced activity was highlighted. • Multi-functional applications of (BiO)_2CO_3 based derivatives was demonstrated. - Abstract: (BiO)_2CO_3 (BOC), a fascinating material, belongs to the Aurivillius-related oxide family with an intergrowth texture in which Bi_2O_2"2"+ layers and CO_3"2"− layers are orthogonal to each other. BOC is a suitable candidate for various fields, such as healthcare, photocatalysis, humidity sensor, nonlinear optical application and supercapacitors. Recently, the photocatalysis properties of (BiO)_2CO_3 have been gained increased attention. BOC has a wide band gap (3.1–3.5 eV), which constrains its visible light absorption and utilization. In order to enhance the visible light driven photocatalytic performance of BOC, many modification strategies have been developed. According to the discrepancies of different coupling mechanisms, six primary systems of BOC-based nanocomposites can be classified and summarized: namely, metal/BOC heterojunction, single metal oxides (metal sulfides)/BOC heterostructure, bismuth-based metallic acid salts (Bi_xMO_y)/BOC, bismuth oxyhalides (BiOX)/BOC, metal-free semiconductor/BOC and the BOC-based complex heterojunction. Doping BOC with nonmetals (C, N and oxygen vacancy) is unique strategy and warrants a separate categorization. In this review, we first give a detailed description of the strategies to fabricate various BOC micro/nano structures. Next, the mechanisms of photocatalytic activity enhancement are elaborated in three parts, including BOC-based nanocomposites, nonmetal doping and formation of oxygen vacancy. The enhanced photocatalytic activity of BOC-based systems can be attributed to the unique interaction of

Student project of optical system analysis API-library development

Science.gov (United States)

Ivanova, Tatiana; Zhukova, Tatiana; Dantcaranov, Ruslan; Romanova, Maria; Zhadin, Alexander; Ivanov, Vyacheslav; Kalinkina, Olga

2017-08-01

In the paper API-library software developed by students of Applied and Computer Optics Department (ITMO University) for optical system design is presented. The library performs paraxial and real ray tracing, calculates 3d order (Seidel) aberration and real ray aberration of axis and non-axis beams (wave, lateral, longitudinal, coma, distortion etc.) and finally, approximate wave aberration by Zernike polynomials. Real aperture can be calculated by considering of real rays tracing failure on each surface. So far we assume optical system is centered, with spherical or 2d order aspherical surfaces. Optical glasses can be set directly by refraction index or by dispersion coefficients. The library can be used for education or research purposes in optical system design area. It provides ready to use software functions for optical system simulation and analysis that developer can simply plug into their software development for different purposes, for example for some specific synthesis tasks or investigation of new optimization modes. In the paper we present an example of using the library for development of cemented doublet synthesis software based on Slusarev's methodology. The library is used in optical system optimization recipes course for deep studying of optimization model and its application for optical system design. Development of such software is an excellent experience for students and help to understanding optical image modeling and quality analysis. This development is organized as student group joint project. We try to organize it as a group in real research and development project, so each student has his own role in the project and then use whole library functionality in his own master or bachelor thesis. Working in such group gives students useful experience and opportunity to work as research and development engineer of scientific software in the future.

Bio-oil and bio-char production from corn cobs and stover by fast pyrolysis

Energy Technology Data Exchange (ETDEWEB)

Mullen, Charles A.; Boateng, Akwasi A.; Goldberg, Neil M.; Hicks, Kevin B. [Eastern Regional Research Center, Agricultural Research Service, U.S. Department of Agriculture, 600 E. Mermaid Lane, Wyndmoor, PA 19038 (United States); Lima, Isabel M. [Southern Regional Research Center, Agricultural Research Service, U.S. Department of Agriculture, 1100 Robert E. Lee Blvd., New Orleans, LA 70124 (United States); Laird, David A. [National Soil Tilth Laboratory, U.S. Agricultural Research Service, U.S. Department of Agriculture, 2110 University Blvd., Ames, IA 50011 (United States)

2010-01-15

Bio-oil and bio-char were produced from corn cobs and corn stover (stalks, leaves and husks) by fast pyrolysis using a pilot scale fluidized bed reactor. Yields of 60% (mass/mass) bio-oil (high heating values are {proportional_to}20 MJ kg{sup -1}, and densities >1.0 Mg m{sup -3}) were realized from both corn cobs and from corn stover. The high energy density of bio-oil, {proportional_to}20-32 times on a per unit volume basis over the raw corn residues, offers potentially significant savings in transportation costs particularly for a distributed ''farm scale'' bio-refinery system. Bio-char yield was 18.9% and 17.0% (mass/mass) from corn cobs and corn stover, respectively. Deploying the bio-char co-product, which contains most of the nutrient minerals from the corn residues, as well as a significant amount of carbon, to the land can enhance soil quality, sequester carbon, and alleviate environmental problems associated with removal of crop residues from fields. (author)

Optical absorption enhancement by inserting ZnO optical spacer in plasmonic organic solar cells

Science.gov (United States)

N'Konou, Kekeli; Torchio, Philippe

2018-01-01

Optical absorption enhancement (AE) using coupled optical spacer and plasmonic effects in standard and inverted organic solar cells (OSCs) are demonstrated using the finite-difference time-domain numerical method. The influence of an added zinc oxide (ZnO) optical spacer layer inserted below the active layer in standard architecture is first theoretically investigated while the influence of varying the ZnO cathodic buffer layer thickness in inverted design is studied on AE. Then, the embedding of a square periodic array of core-shell silver-silica nanospheres (Ag@SiO2 NSs) at different positions in standard and inverted OSCs is performed while AE and short-circuit current density (Jsc) are calculated. As a result of previous combined effects, the optimized standard plasmonic OSCs present 15% and 79.45% enhancement in J over the reference with and without ZnO optical spacer layer, respectively, and a 16% increase of AE when Ag@SiO2 NSs are placed on top of the PEDOT:PSS layer. Compared to the inverted OSC reference, the plasmonic OSCs present 26% and 27% enhancement in J and AE, respectively, when the Ag@SiO2 NSs are located on top of the ZnO layer. Furthermore, the spatial position of these NSs in such OSCs is a key parameter for increasing light absorption via enhanced electromagnetic field distribution.

Variation of particulate organic carbon and its relationship with bio-optical properties during a phytoplankton bloom in the Pearl River estuary

International Nuclear Information System (INIS)

Wang Guifen; Zhou Wen; Cao Wenxi; Yin Jianping; Yang Yuezhong; Sun Zhaohua; Zhang Yuanzhi; Zhao Jun

2011-01-01

Highlights: → A study about relationship between POC and optical properties during a phytoplankton bloom. → Empirical algorithms for retrieving POC concentration from optical data were developed. → Phytoplankton carbon and it's ratio to Chl-a are estimated and discussed. → Demonstrates that marine optical buoy can be a new platform for monitoring biogeochemical cycle. - Abstract: In this study, variations in the particulate organic carbon (POC) were monitored during a phytoplankton bloom event, and the corresponding changes in bio-optical properties were tracked at one station (114.29 o E, 22.06 o N) located in the Pearl River estuary. A greater than 10-fold increase in POC (112.29-1173.36 mg m -3 ) was observed during the bloom, with the chlorophyll a concentration (Chl-a) varying from 0.984 to 25.941 mg m -3 . A power law function is used to describe the relationship between POC and Chl-a, and the POC:Chl-a ratio tends to change inversely with Chl-a. Phytoplankton carbon concentration is indirectly estimated using the conceptual model proposed by , and this carbon is found to contribute 47.21% (±10.65%) to total POC. The estimated carbon-to-chlorophyll ratio of phytoplankton in diatom-dominated waters is found to be comparable with results reported in the literature. Empirical algorithms for determining the concentrations of Chl-a and POC were developed based on the relationships of these variables with the blue-to-green reflectance ratio. With these bio-optical models, the levels of particulate organic carbon and Chl-a could be predicted from the radiometric data measured by a marine optical buoy, which showed much more detailed information about the variability in biogeochemical parameters during this bloom event.

Inquiry Based Projects Using Student Ozone Measurements and the Status of Using Plants as Bio-Indicators

Science.gov (United States)

Ladd, I. H.; Fishman, J.; Pippin, M.; Sachs, S.; Skelly, J.; Chappelka, A.; Neufeld, H.; Burkey, K.

2006-05-01

Students around the world work cooperatively with their teachers and the scientific research community measuring local surface ozone levels using a hand-held optical scanner and ozone sensitive chemical strips. Through the GLOBE (Global Learning and Observations to Benefit the Environment) Program, students measuring local ozone levels are connected with the chemistry of the air they breathe and how human activity impacts air quality. Educational tools have been developed and correlated with the National Science and Mathematics Standards to facilitate integrating the study of surface ozone with core curriculum. Ozone air pollution has been identified as the major pollutant causing foliar injury to plants when they are exposed to concentrations of surface ozone. The inclusion of native and agricultural plants with measuring surface ozone provides an Earth system approach to understanding surface ozone. An implementation guide for investigating ozone induced foliar injury has been developed and field tested. The guide, Using Sensitive Plants as Bio-Indicators of Ozone Pollution, provides: the background information and protocol for implementing an "Ozone Garden" with native and agricultural plants; and, a unique opportunity to involve students in a project that will develop and increase their awareness of surface ozone air pollution and its impact on plants.

Integrated biomass utilization system developments (Kyoto-Bio-Cycle Project) and the effects of greenhouse gas reduction

International Nuclear Information System (INIS)

Nakamura, Kazuo; Hori, Hiroaki; Deguchi, Shinguo; Yano, Junya; Sakai, Shinichi

2010-01-01

Full text: The biomass available in Kyoto City located in urban area of Japan was estimated to be 2.02x10 6 t-wet/ yr (0.14x10 6 k liter/ yr oil equivalent), of which waste paper, waste timber, waste food, unused forest wood from the surrounding mountains and sewage sludge account for the largest amounts on an energy basis. These types of biomass can contribute to utilize for the reduction of fossil fuel consumption and for the reduction of greenhouse gas (GHG) emission. Therefore we started the Kyoto-Bio-Cycle Project (FY 2007-2009), which is the demonstration of renewable energy conversion technologies from the biomass. Specifically, we aimed for the greening of necessary materials such as methanol and the cyclic use of byproducts, with the bio diesel fuel production from used cooking oil (5 k liter-methyl ester/ day) as the core activity. Two technologies are being developed as part of the project. One is gasification and methanol synthesis to synthesize methanol with the pyrolytic gas generated from woody biomass. The other is high efficiency bio gasification that treats waste food, waste paper, and waste glycerin. This technology can improve the production rate of biogas and reduce the residue through the introduction of 80 degree Celsius-hyper-thermophilic hydrolysis in the 55 degree Celsius-thermophilic anaerobic fermentation process. These systems can produce 4 types of renewable energy such as bio diesel fuel, biogas, electricity and heat. And we conducted the life-cycle system analysis of GHG reduction effect for the demonstrating technologies, additionally we examined an optimum method of biomass utilization in the future low-carbon-society. As a result, the method that produces the liquid fuel (methanol, Ft oil) from dry biomass (waste timber, etc.) and the biogas from wet biomass (waste food, etc.) can reduce GHG emission highly at present and in the future, compared with the current direct combustion of biomass for the power generation. (author)

An optical water type framework for selecting and blending retrievals from bio-optical algorithms in lakes and coastal waters.

Science.gov (United States)

Moore, Timothy S; Dowell, Mark D; Bradt, Shane; Verdu, Antonio Ruiz

2014-03-05

Bio-optical models are based on relationships between the spectral remote sensing reflectance and optical properties of in-water constituents. The wavelength range where this information can be exploited changes depending on the water characteristics. In low chlorophyll- a waters, the blue/green region of the spectrum is more sensitive to changes in chlorophyll- a concentration, whereas the red/NIR region becomes more important in turbid and/or eutrophic waters. In this work we present an approach to manage the shift from blue/green ratios to red/NIR-based chlorophyll- a algorithms for optically complex waters. Based on a combined in situ data set of coastal and inland waters, measures of overall algorithm uncertainty were roughly equal for two chlorophyll- a algorithms-the standard NASA OC4 algorithm based on blue/green bands and a MERIS 3-band algorithm based on red/NIR bands-with RMS error of 0.416 and 0.437 for each in log chlorophyll- a units, respectively. However, it is clear that each algorithm performs better at different chlorophyll- a ranges. When a blending approach is used based on an optical water type classification, the overall RMS error was reduced to 0.320. Bias and relative error were also reduced when evaluating the blended chlorophyll- a product compared to either of the single algorithm products. As a demonstration for ocean color applications, the algorithm blending approach was applied to MERIS imagery over Lake Erie. We also examined the use of this approach in several coastal marine environments, and examined the long-term frequency of the OWTs to MODIS-Aqua imagery over Lake Erie.

Seasonal variability in bio-optical properties along the coastal waters off Cochin

KAUST Repository

Vishnu, P.S.; Shaju, S.S.; Tiwari, Surya Prakash; Menon, Nandini; Nashad, M.; Joseph, C. Ajith; Raman, Mini; Hatha, Mohamed; Prabhakaran, M.P.; Mohandas, A.

2017-01-01

Strong seasonal upwelling, downwelling, changes in current patterns and the volume of freshwater discharge from Cochin Estuary defines the coastal waters off Cochin. These coastal waters were investigated through monthly sampling efforts during March 2015 to February 2016 to study the seasonal and spatial variability in bio-optical properties for the four different seasons mainly Spring Inter Monsoon (SIM), South West Monsoon (SWM), Fall Inter Monsoon (FIM) and Winter Monsoon (WM). The Barmouth region is the meeting place where freshwater from Cochin Estuary directly enters to the sea through a single narrow outlet, was dominated by highly turbid waters during the entire period of study. Among the four seasons, chlorophyll a (Chl_a) concentration showed a high value during SWM, ranged from 2.90 to 11.66 mg m−3 with an average value of 6.56 ± 3.51 mg m−3. During SIM the distribution of coloured dissolved organic matter (CDOM) is controlled by decomposition of phytoplankton biomass and the river discharge, whereas during SWM the temporal distribution of CDOM is controlled only by river discharge. The highest value for CDOM spectral slope (SCDOM) was observed during SWM, ranged from 0.013 to 0.020 nm−1 with an average value of 0.015 ± 0.002 nm−1. During WM, the high SCDOM with lower aCDOM (443) indicates the photo-degradation affects the absorption characteristics of CDOM. The observed nonlinearity between Chl_a and the ratio of phytoplankton absorption aph (443)/aph (670) indicating the packaging effect and changes in the intercellular composition of pigments. During the study period, aph (670) was strongly correlated with Chl_a than aph (443), which explains the accessory pigment absorption dominating more than Chl_a in the blue part of the spectrum. Similarly, the results obtained from seasonal bio-optical data indicating that Chl_a significantly contributes light attenuation of the water column during SIM, whereas detritus (ad

Seasonal variability in bio-optical properties along the coastal waters off Cochin

Science.gov (United States)

Vishnu, P. S.; Shaju, S. S.; Tiwari, S. P.; Menon, Nandini; Nashad, M.; Joseph, C. Ajith; Raman, Mini; Hatha, Mohamed; Prabhakaran, M. P.; Mohandas, A.

2018-04-01

Strong seasonal upwelling, downwelling, changes in current patterns and the volume of freshwater discharge from Cochin Estuary defines the coastal waters off Cochin. These coastal waters were investigated through monthly sampling efforts during March 2015 to February 2016 to study the seasonal and spatial variability in bio-optical properties for the four different seasons mainly Spring Inter Monsoon (SIM), South West Monsoon (SWM), Fall Inter Monsoon (FIM) and Winter Monsoon (WM). The Barmouth region is the meeting place where freshwater from Cochin Estuary directly enters to the sea through a single narrow outlet, was dominated by highly turbid waters during the entire period of study. Among the four seasons, chlorophyll a (Chl_a) concentration showed a high value during SWM, ranged from 2.90 to 11.66 mg m-3 with an average value of 6.56 ± 3.51 mg m-3. During SIM the distribution of coloured dissolved organic matter (CDOM) is controlled by decomposition of phytoplankton biomass and the river discharge, whereas during SWM the temporal distribution of CDOM is controlled only by river discharge. The highest value for CDOM spectral slope (SCDOM) was observed during SWM, ranged from 0.013 to 0.020 nm-1 with an average value of 0.015 ± 0.002 nm-1. During WM, the high SCDOM with lower aCDOM (443) indicates the photo-degradation affects the absorption characteristics of CDOM. The observed nonlinearity between Chl_a and the ratio of phytoplankton absorption aph (443)/aph (670) indicating the packaging effect and changes in the intercellular composition of pigments. During the study period, aph (670) was strongly correlated with Chl_a than aph (443), which explains the accessory pigment absorption dominating more than Chl_a in the blue part of the spectrum. Similarly, the results obtained from seasonal bio-optical data indicating that Chl_a significantly contributes light attenuation of the water column during SIM, whereas detritus (ad) significantly contributes light

Seasonal variability in bio-optical properties along the coastal waters off Cochin

KAUST Repository

Vishnu, P.S.

2017-12-15

Strong seasonal upwelling, downwelling, changes in current patterns and the volume of freshwater discharge from Cochin Estuary defines the coastal waters off Cochin. These coastal waters were investigated through monthly sampling efforts during March 2015 to February 2016 to study the seasonal and spatial variability in bio-optical properties for the four different seasons mainly Spring Inter Monsoon (SIM), South West Monsoon (SWM), Fall Inter Monsoon (FIM) and Winter Monsoon (WM). The Barmouth region is the meeting place where freshwater from Cochin Estuary directly enters to the sea through a single narrow outlet, was dominated by highly turbid waters during the entire period of study. Among the four seasons, chlorophyll a (Chl_a) concentration showed a high value during SWM, ranged from 2.90 to 11.66 mg m−3 with an average value of 6.56 ± 3.51 mg m−3. During SIM the distribution of coloured dissolved organic matter (CDOM) is controlled by decomposition of phytoplankton biomass and the river discharge, whereas during SWM the temporal distribution of CDOM is controlled only by river discharge. The highest value for CDOM spectral slope (SCDOM) was observed during SWM, ranged from 0.013 to 0.020 nm−1 with an average value of 0.015 ± 0.002 nm−1. During WM, the high SCDOM with lower aCDOM (443) indicates the photo-degradation affects the absorption characteristics of CDOM. The observed nonlinearity between Chl_a and the ratio of phytoplankton absorption aph (443)/aph (670) indicating the packaging effect and changes in the intercellular composition of pigments. During the study period, aph (670) was strongly correlated with Chl_a than aph (443), which explains the accessory pigment absorption dominating more than Chl_a in the blue part of the spectrum. Similarly, the results obtained from seasonal bio-optical data indicating that Chl_a significantly contributes light attenuation of the water column during SIM, whereas detritus (ad

Nano-Gap Embedded Plasmonic Gratings for Surface Plasmon Enhanced Fluorescence

Science.gov (United States)

Bhatnagar, Kunal; Bok, Sangho; Korampally, Venumadhav; Gangopadhyay, Shubhra

2012-02-01

Plasmonic nanostructures have been extensively used in the past few decades for applications in sub-wavelength optics, data storage, optoelectronic circuits, microscopy and bio-photonics. The enhanced electromagnetic field produced at the metal/dielectric interface by the excitation of surface plasmons via incident radiation can be used for signal enhancement in fluorescence and surface enhanced Raman scattering studies. Novel plasmonic structures on the sub wavelength scale have been shown to provide very efficient and extreme light concentration at the nano-scale. The enhanced electric field produced within a few hundred nanometers of these structures can be used to excite fluorophores in the surrounding environment. Fluorescence based bio-detection and bio-imaging are two of the most important tools in the life sciences. Improving the qualities and capabilities of fluorescence based detectors and imaging equipment has been a big challenge to the industry manufacturers. We report the novel fabrication of nano-gap embedded periodic grating substrates on the nanoscale using micro-contact printing and polymethylsilsesquioxane (PMSSQ) polymer. Fluorescence enhancement of up to 118 times was observed with these silver nanostructures in conjugation with Rhodamine-590 fluorescent dye. These substrates are ideal candidates for low-level fluorescence detection and single molecule imaging.

BioData: a national aquatic bioassessment database

Science.gov (United States)

MacCoy, Dorene

2011-01-01

BioData is a U.S. Geological Survey (USGS) web-enabled database that for the first time provides for the capture, curation, integration, and delivery of bioassessment data collected by local, regional, and national USGS projects. BioData offers field biologists advanced capabilities for entering, editing, and reviewing the macroinvertebrate, algae, fish, and supporting habitat data from rivers and streams. It offers data archival and curation capabilities that protect and maintain data for the long term. BioData provides the Federal, State, and local governments, as well as the scientific community, resource managers, the private sector, and the public with easy access to tens of thousands of samples collected nationwide from thousands of stream and river sites. BioData also provides the USGS with centralized data storage for delivering data to other systems and applications through automated web services. BioData allows users to combine data sets of known quality from different projects in various locations over time. It provides a nationally aggregated database for users to leverage data from many independent projects that, until now, was not feasible at this scale. For example, from 1991 to 2011, the USGS Idaho Water Science Center collected more than 816 bioassessment samples from 63 sites for the National Water Quality Assessment (NAWQA) Program and more than 477 samples from 39 sites for a cooperative USGS and State of Idaho Statewide Water Quality Network (fig. 1). Using BioData, 20 years of samples collected for both of these projects can be combined for analysis. BioData delivers all of the data using current taxonomic nomenclature, thus relieving users of the difficult and time-consuming task of harmonizing taxonomy among samples collected during different time periods. Fish data are reported using the Integrated Taxonomic Information Service (ITIS) Taxonomic Serial Numbers (TSN's). A simple web-data input interface and self-guided, public data

Surface-enhanced FAST CARS: en route to quantum nano-biophotonics

Science.gov (United States)

Voronine, Dmitri V.; Zhang, Zhenrong; Sokolov, Alexei V.; Scully, Marlan O.

2018-02-01

Quantum nano-biophotonics as the science of nanoscale light-matter interactions in biological systems requires developing new spectroscopic tools for addressing the challenges of detecting and disentangling weak congested optical signals. Nanoscale bio-imaging addresses the challenge of the detection of weak resonant signals from a few target biomolecules in the presence of the nonresonant background from many undesired molecules. In addition, the imaging must be performed rapidly to capture the dynamics of biological processes in living cells and tissues. Label-free non-invasive spectroscopic techniques are required to minimize the external perturbation effects on biological systems. Various approaches were developed to satisfy these requirements by increasing the selectivity and sensitivity of biomolecular detection. Coherent anti-Stokes Raman scattering (CARS) and surface-enhanced Raman scattering (SERS) spectroscopies provide many orders of magnitude enhancement of chemically specific Raman signals. Femtosecond adaptive spectroscopic techniques for CARS (FAST CARS) were developed to suppress the nonresonant background and optimize the efficiency of the coherent optical signals. This perspective focuses on the application of these techniques to nanoscale bio-imaging, discussing their advantages and limitations as well as the promising opportunities and challenges of the combined coherence and surface enhancements in surface-enhanced coherent anti-Stokes Raman scattering (SECARS) and tip-enhanced coherent anti-Stokes Raman scattering (TECARS) and the corresponding surface-enhanced FAST CARS techniques. Laser pulse shaping of near-field excitations plays an important role in achieving these goals and increasing the signal enhancement.

Surface-enhanced FAST CARS: en route to quantum nano-biophotonics

Directory of Open Access Journals (Sweden)

Voronine Dmitri V.

2018-02-01

Full Text Available Quantum nano-biophotonics as the science of nanoscale light-matter interactions in biological systems requires developing new spectroscopic tools for addressing the challenges of detecting and disentangling weak congested optical signals. Nanoscale bio-imaging addresses the challenge of the detection of weak resonant signals from a few target biomolecules in the presence of the nonresonant background from many undesired molecules. In addition, the imaging must be performed rapidly to capture the dynamics of biological processes in living cells and tissues. Label-free non-invasive spectroscopic techniques are required to minimize the external perturbation effects on biological systems. Various approaches were developed to satisfy these requirements by increasing the selectivity and sensitivity of biomolecular detection. Coherent anti-Stokes Raman scattering (CARS and surface-enhanced Raman scattering (SERS spectroscopies provide many orders of magnitude enhancement of chemically specific Raman signals. Femtosecond adaptive spectroscopic techniques for CARS (FAST CARS were developed to suppress the nonresonant background and optimize the efficiency of the coherent optical signals. This perspective focuses on the application of these techniques to nanoscale bio-imaging, discussing their advantages and limitations as well as the promising opportunities and challenges of the combined coherence and surface enhancements in surface-enhanced coherent anti-Stokes Raman scattering (SECARS and tip-enhanced coherent anti-Stokes Raman scattering (TECARS and the corresponding surface-enhanced FAST CARS techniques. Laser pulse shaping of near-field excitations plays an important role in achieving these goals and increasing the signal enhancement.

Near-field enhanced optical tweezers utilizing femtosecond-laser nanostructured substrates

Energy Technology Data Exchange (ETDEWEB)

Kotsifaki, D. G., E-mail: dkotsif@eie.gr; Kandyla, M. [Theoretical and Physical Chemistry Institute, National Hellenic Research Foundation, 48 Vasileos Constantinou Avenue, 11635 Athens (Greece); Lagoudakis, P. G. [Department of Physics and Astronomy, University of Southampton, Southampton SO17 1BJ (United Kingdom)

2015-11-23

We present experimental evidence of plasmonic-enhanced optical tweezers, of polystyrene beads in deionized water in the vicinity of metal-coated nanostructures. The optical tweezers operate with a continuous wave near-infrared laser. We employ a Cu/Au bilayer that significantly improves dissipation of heat generated by the trapping laser beam and avoid de-trapping from heat convection currents. We investigate the improvement of the optical trapping force and the effective trapping quality factor, and observe an exponential distance dependence of the trapping force from the nanostructures, indicative of evanescent plasmonic enhancement.

In vivo molecular photoacoustic tomography of melanomas targeted by bio-conjugated gold nanocages

Science.gov (United States)

Kim, Chulhong; Cho, Eun Chul; Chen, Jingyi; Song, Kwang Hyun; Au, Leslie; Favazza, Christopher; Zhang, Qiang; Cobley, Claire M.; Gao, Feng; Xia, Younan; Wang, Lihong V.

2010-01-01

Early diagnosis, accurate staging, and image-guided resection of melanomas remain crucial clinical objectives for improving patient survival and treatment outcomes. Conventional techniques cannot meet this demand because of the low sensitivity, low specificity, poor spatial resolution, shallow penetration, and/or ionizing radiation. Here we overcome such limitations by combining high-resolution photoacoustic tomography (PAT) with extraordinarily optical absorbing gold nanocages (AuNCs). When bio-conjugated with [Nle4,D-Phe7]-α-melanocyte-stimulating hormone, the AuNCs can serve as a novel contrast agent for in vivo molecular PAT of melanomas with both exquisite sensitivity and high specificity. The bio-conjugated AuNCs enhanced contrast ~300% more than the control, PEGylated AuNCs. The in vivo PAT quantification of the amount of AuNCs accumulated in melanomas was further validated with inductively coupled plasma mass spectrometry (ICP-MS). PMID:20731439

MSU-Northern Bio-Energy Center of Excellence

Energy Technology Data Exchange (ETDEWEB)

Kegel, Greg [Montana State Univ. Northern, Havre, MT (United States); Windy Boy, Jessica [Montana State Univ. Northern, Havre, MT (United States). Bio-Energy Center of Excellence; Maglinao, Randy Latayan [Montana State Univ. Northern, Havre, MT (United States). Bio-Energy Center of Excellence; Abedin, Md. Joynal [Montana State Univ. Northern, Havre, MT (United States). Bio-Energy Center of Excellence

2017-03-02

The goal of this project was to establish the Bio-Energy Center (the Center) of Montana State University Northern (MSUN) as a Regional Research Center of Excellence in research, product development, and commercialization of non-food biomass for the bio-energy industry. A three-step approach, namely, (1) enhance the Center’s research and testing capabilities, (2) develop advanced biofuels from locally grown agricultural crops, and (3) educate the community through outreach programs for public understanding and acceptance of new technologies was identified to achieve this goal. The research activities aimed to address the obstacles concerning the production of biofuels and other bio-based fuel additives considering feedstock quality, conversion process, economic viability, and public awareness. First and foremost in enhancing the capabilities of the Center is the improvement of its laboratories and other physical facilities for investigating new biomass conversion technologies and the development of its manpower complement with expertise in chemistry, engineering, biology, and energy. MSUN renovated its Auto Diagnostics building and updated its mechanical and electrical systems necessary to house the state-of-the-art 525kW (704 hp) A/C Dynamometer. The newly renovated building was designated as the Advanced Fuels Building. Two laboratories, namely Biomass Conversion lab and Wet Chemistry lab were also added to the Center’s facilities. The Biomass Conversion lab was for research on the production of advanced biofuels including bio-jet fuel and bio-based fuel additives while the Wet Chemistry lab was used to conduct catalyst research. Necessary equipment and machines, such as gas chromatograph-mass spectrometry, were purchased and installed to help in research and testing. With the enhanced capabilities of the Center, research and testing activities were very much facilitated and more precise. New biofuels derived from Camelina sativa (camelina), a locally

Dynamic optical bistability in resonantly enhanced Raman generation

International Nuclear Information System (INIS)

Novikova, I.; Phillips, D.F.; Zibrov, A.S.; Andre, A.; Walsworth, R.L.

2004-01-01

We report observations of novel dynamic behavior in resonantly enhanced stimulated Raman scattering in Rb vapor. In particular, we demonstrate a dynamic hysteresis of the Raman scattered optical field in response to changes of the drive laser field intensity and/or frequency. This effect may be described as a dynamic form of optical bistability resulting from the formation and decay of atomic coherence. We have applied this phenomenon to the realization of an all-optical switch

Bio-Photonic Detection of Various Cellular Cultures

Science.gov (United States)

Hann, Patrick; Garzon, Maria; Pfeiffer, Erik; Lofland, Samuel; Knoesel, Ernst

2008-03-01

Since it is non-invasive, there has been increased research in the field of bio-optics. Many biological systems display an unusual phenomenon, delayed luminescence, produced by what is known as bio-photons. We present an apparatus and procedure for the detection of these ultra-weak photonic emissions using a single photon detection device. The results of bread yeast, saccramyces, and algae will be presented and compared to other reports in the literature

Enhancement of Stereo Imagery by Artificial Texture Projection Generated Using a LIDAR

Science.gov (United States)

Veitch-Michaelis, Joshua; Muller, Jan-Peter; Walton, David; Storey, Jonathan; Foster, Michael; Crutchley, Benjamin

2016-06-01

Passive stereo imaging is capable of producing dense 3D data, but image matching algorithms generally perform poorly on images with large regions of homogenous texture due to ambiguous match costs. Stereo systems can be augmented with an additional light source that can project some form of unique texture onto surfaces in the scene. Methods include structured light, laser projection through diffractive optical elements, data projectors and laser speckle. Pattern projection using lasers has the advantage of producing images with a high signal to noise ratio. We have investigated the use of a scanning visible-beam LIDAR to simultaneously provide enhanced texture within the scene and to provide additional opportunities for data fusion in unmatched regions. The use of a LIDAR rather than a laser alone allows us to generate highly accurate ground truth data sets by scanning the scene at high resolution. This is necessary for evaluating different pattern projection schemes. Results from LIDAR generated random dots are presented and compared to other texture projection techniques. Finally, we investigate the use of image texture analysis to intelligently project texture where it is required while exploiting the texture available in the ambient light image.

ENHANCEMENT OF STEREO IMAGERY BY ARTIFICIAL TEXTURE PROJECTION GENERATED USING A LIDAR

Directory of Open Access Journals (Sweden)

J. Veitch-Michaelis

2016-06-01

Full Text Available Passive stereo imaging is capable of producing dense 3D data, but image matching algorithms generally perform poorly on images with large regions of homogenous texture due to ambiguous match costs. Stereo systems can be augmented with an additional light source that can project some form of unique texture onto surfaces in the scene. Methods include structured light, laser projection through diffractive optical elements, data projectors and laser speckle. Pattern projection using lasers has the advantage of producing images with a high signal to noise ratio. We have investigated the use of a scanning visible-beam LIDAR to simultaneously provide enhanced texture within the scene and to provide additional opportunities for data fusion in unmatched regions. The use of a LIDAR rather than a laser alone allows us to generate highly accurate ground truth data sets by scanning the scene at high resolution. This is necessary for evaluating different pattern projection schemes. Results from LIDAR generated random dots are presented and compared to other texture projection techniques. Finally, we investigate the use of image texture analysis to intelligently project texture where it is required while exploiting the texture available in the ambient light image.

Geoscience Diversity Enhancement Project: Student Responses.

Science.gov (United States)

Rodrigue, Christine M.; Wechsler, Suzanne P.; Whitney, David J.; Ambos, Elizabeth L.; Ramirez-Herrera, Maria Teresa; Behl, Richard; Francis, Robert D.; Larson, Daniel O.; Hazen, Crisanne

This paper describes an interdisciplinary project at California State University (Long Beach) designed to increase the attractiveness of the geosciences to underrepresented groups. The project is called the Geoscience Diversity Enhancement Project (GDEP). It is a 3-year program which began in the fall of 2001 with funding from the National Science…

Acousto-optic laser projection systems for displaying TV information

International Nuclear Information System (INIS)

Gulyaev, Yu V; Kazaryan, M A; Mokrushin, Yu M; Shakin, O V

2015-01-01

This review addresses various approaches to television projection imaging on large screens using lasers. Results are presented of theoretical and experimental studies of an acousto-optic projection system operating on the principle of projecting an image of an entire amplitude-modulated television line in a single laser pulse. We consider characteristic features of image formation in such a system and the requirements for its individual components. Particular attention is paid to nonlinear distortions of the image signal, which show up most severely at low modulation signal frequencies. We discuss the feasibility of improving the process efficiency and image quality using acousto-optic modulators and pulsed lasers. Real-time projectors with pulsed line imaging can be used for controlling high-intensity laser radiation. (review)

Acousto-optic laser projection systems for displaying TV information

Science.gov (United States)

Gulyaev, Yu V.; Kazaryan, M. A.; Mokrushin, Yu M.; Shakin, O. V.

2015-04-01

This review addresses various approaches to television projection imaging on large screens using lasers. Results are presented of theoretical and experimental studies of an acousto-optic projection system operating on the principle of projecting an image of an entire amplitude-modulated television line in a single laser pulse. We consider characteristic features of image formation in such a system and the requirements for its individual components. Particular attention is paid to nonlinear distortions of the image signal, which show up most severely at low modulation signal frequencies. We discuss the feasibility of improving the process efficiency and image quality using acousto-optic modulators and pulsed lasers. Real-time projectors with pulsed line imaging can be used for controlling high-intensity laser radiation.

Acousto-optic laser projection systems for displaying TV information

Energy Technology Data Exchange (ETDEWEB)

Gulyaev, Yu V [V.A.Kotel' nikov Institute of Radio Engineering and Electronics, Russian Academy of Sciences, Moscow (Russian Federation); Kazaryan, M A [P N Lebedev Physics Institute, Russian Academy of Sciences, Moscow (Russian Federation); Mokrushin, Yu M [D.V. Efremov Scientific Research Institute of Electrophysical Apparatus (Russian Federation); Shakin, O V [Ioffe Physical Technical Institute, Russian Academy of Sciences, St. Petersburg (Russian Federation)

2015-04-30

This review addresses various approaches to television projection imaging on large screens using lasers. Results are presented of theoretical and experimental studies of an acousto-optic projection system operating on the principle of projecting an image of an entire amplitude-modulated television line in a single laser pulse. We consider characteristic features of image formation in such a system and the requirements for its individual components. Particular attention is paid to nonlinear distortions of the image signal, which show up most severely at low modulation signal frequencies. We discuss the feasibility of improving the process efficiency and image quality using acousto-optic modulators and pulsed lasers. Real-time projectors with pulsed line imaging can be used for controlling high-intensity laser radiation. (review)

Electrical and Optical Enhancement in Internally Nanopatterned Organic Light-Emitting Diodes

Science.gov (United States)

Fina, Michael Dane

Organic light-emitting diodes (OLEDs) have made tremendous technological progress in the past two decades and have emerged as a top competitor for next generation light-emitting displays and lighting. State-of-the-art OLEDs have been reported in literature to approach, and even surpass, white fluorescent tube efficiency. However, despite rapid technological progress, efficiency metrics must be improved to compete with traditional inorganic light-emitting diode (LED) technology. Organic materials possess specialized traits that permit manipulations to the light-emitting cavity. Overall, as demonstrated within, these modifications can be used to improve electrical and optical device efficiencies. This work is focused at analyzing the effects that nanopatterned geometric modifications to the organic active layers play on device efficiency. In general, OLED efficiency is complicated by the complex, coupled processes which contribute to spontaneous dipole emission. A composite of three sub-systems (electrical, exciton and optical) ultimately dictate the OLED device efficiency. OLED electrical operation is believed to take place via a low-mobility-modified Schottky injection process. In the injection-limited regime, geometric effects are expected to modify the local electric field leading to device current enhancement. It is shown that the patterning effect can be used to enhance charge carrier parity, thereby enhancing overall recombination. Current density and luminance characteristics are shown to be improved by OLED nanopatterning from both the model developed within and experimental techniques. Next, the optical enhancement effects produced by the nanopatterned array are considered. Finite-difference time-domain (FDTD) simulations are used to determine positional, spectral optical enhancement for the nanopatterned device. The results show beneficial effects to the device performance. The optical enhancements are related to the reduction in internal radiative

Anatomy of BioJS, an open source community for the life sciences.

Science.gov (United States)

Yachdav, Guy; Goldberg, Tatyana; Wilzbach, Sebastian; Dao, David; Shih, Iris; Choudhary, Saket; Crouch, Steve; Franz, Max; García, Alexander; García, Leyla J; Grüning, Björn A; Inupakutika, Devasena; Sillitoe, Ian; Thanki, Anil S; Vieira, Bruno; Villaveces, José M; Schneider, Maria V; Lewis, Suzanna; Pettifer, Steve; Rost, Burkhard; Corpas, Manuel

2015-07-08

BioJS is an open source software project that develops visualization tools for different types of biological data. Here we report on the factors that influenced the growth of the BioJS user and developer community, and outline our strategy for building on this growth. The lessons we have learned on BioJS may also be relevant to other open source software projects.

Surface plasmon resonance optical cavity enhanced refractive index sensing

Czech Academy of Sciences Publication Activity Database

Giorgini, A.; Avino, S.; Malara, P.; Gagliardi, G.; Casalino, M.; Coppola, G.; Iodice, M.; Adam, Pavel; Chadt, Karel; Homola, Jiří; De Natale, P.

2013-01-01

Roč. 38, č. 11 (2013), s. 1951-1953 ISSN 0146-9592 R&D Projects: GA ČR GBP205/12/G118 Institutional support: RVO:67985882 Keywords : Resonators * Surface plasmons * Optical sensing and sensors Subject RIV: BH - Optics, Masers, Lasers Impact factor: 3.179, year: 2013

Accuracy and performance of 3D mask models in optical projection lithography

Science.gov (United States)

Agudelo, Viviana; Evanschitzky, Peter; Erdmann, Andreas; Fühner, Tim; Shao, Feng; Limmer, Steffen; Fey, Dietmar

2011-04-01

Different mask models have been compared: rigorous electromagnetic field (EMF) modeling, rigorous EMF modeling with decomposition techniques and the thin mask approach (Kirchhoff approach) to simulate optical diffraction from different mask patterns in projection systems for lithography. In addition, each rigorous model was tested for two different formulations for partially coherent imaging: The Hopkins assumption and rigorous simulation of mask diffraction orders for multiple illumination angles. The aim of this work is to closely approximate results of the rigorous EMF method by the thin mask model enhanced with pupil filtering techniques. The validity of this approach for different feature sizes, shapes and illumination conditions is investigated.

Bio stimulation for the Enhanced Degradation of Herbicides in Soil

International Nuclear Information System (INIS)

Kanissery, R.G; Sims, G.K

2011-01-01

Cleanup of herbicide-contaminated soils has been a dire environmental concern since the advent of industrial era. Although microorganisms are excellent degraders of herbicide compounds in the soil, some reparation may need to be brought about, in order to stimulate them to degrade the herbicide at a faster rate in a confined time frame. Bio stimulation through the appropriate utilization of organic amendments and nutrients can accelerate the degradation of herbicides in the soil. However, effective use of bio stimulants requires thorough comprehension of the global redox cycle during the microbial degradation of the herbicide molecules in the soil. In this paper, we present the prospects of using bio stimulation as a powerful remediation strategy for the rapid cleanup of herbicide-polluted soils.

Evolving BioAssay Ontology (BAO): modularization, integration and applications.

Science.gov (United States)

Abeyruwan, Saminda; Vempati, Uma D; Küçük-McGinty, Hande; Visser, Ubbo; Koleti, Amar; Mir, Ahsan; Sakurai, Kunie; Chung, Caty; Bittker, Joshua A; Clemons, Paul A; Brudz, Steve; Siripala, Anosha; Morales, Arturo J; Romacker, Martin; Twomey, David; Bureeva, Svetlana; Lemmon, Vance; Schürer, Stephan C

2014-01-01

The lack of established standards to describe and annotate biological assays and screening outcomes in the domain of drug and chemical probe discovery is a severe limitation to utilize public and proprietary drug screening data to their maximum potential. We have created the BioAssay Ontology (BAO) project (http://bioassayontology.org) to develop common reference metadata terms and definitions required for describing relevant information of low-and high-throughput drug and probe screening assays and results. The main objectives of BAO are to enable effective integration, aggregation, retrieval, and analyses of drug screening data. Since we first released BAO on the BioPortal in 2010 we have considerably expanded and enhanced BAO and we have applied the ontology in several internal and external collaborative projects, for example the BioAssay Research Database (BARD). We describe the evolution of BAO with a design that enables modeling complex assays including profile and panel assays such as those in the Library of Integrated Network-based Cellular Signatures (LINCS). One of the critical questions in evolving BAO is the following: how can we provide a way to efficiently reuse and share among various research projects specific parts of our ontologies without violating the integrity of the ontology and without creating redundancies. This paper provides a comprehensive answer to this question with a description of a methodology for ontology modularization using a layered architecture. Our modularization approach defines several distinct BAO components and separates internal from external modules and domain-level from structural components. This approach facilitates the generation/extraction of derived ontologies (or perspectives) that can suit particular use cases or software applications. We describe the evolution of BAO related to its formal structures, engineering approaches, and content to enable modeling of complex assays and integration with other ontologies and

Inorganic Nanocrystals Functionalized Mesoporous Silica Nanoparticles: Fabrication and Enhanced Bio-applications

Directory of Open Access Journals (Sweden)

Tiancong Zhao

2017-12-01

Full Text Available Mesoporous SiO2 nanoparticles (MSNs are one of the most promising materials for bio-related applications due to advantages such as good biocompatibility, tunable mesopores, and large pore volume. However, unlike the inorganic nanocrystals with abundant physical properties, MSNs alone lack functional features. Thus, they are not sufficiently suitable for bio-applications that require special functions. Consequently, MSNs are often functionalized by incorporating inorganic nanocrystals, which provide a wide range of intriguing properties. This review focuses on inorganic nanocrystals functionalized MSNs, both their fabrication and bio-applications. Some of the most utilized methods for coating mesoporous silica (mSiO2 on nanoparticles were summarized. Magnetic, fluorescence and photothermal inorganic nanocrystals functionalized MSNs were taken as examples to demonstrate the bio-applications. Furthermore, asymmetry of MSNs and their effects on functions were also highlighted.

Upgrading of Intermediate Bio-Oil Produced by Catalytic Pyrolysis

Energy Technology Data Exchange (ETDEWEB)

Abdullah, Zia [Battelle Memorial Inst., Columbus, OH (United States); Chadwell, Brad [Battelle Memorial Inst., Columbus, OH (United States); Taha, Rachid [Battelle Memorial Inst., Columbus, OH (United States); Hindin, Barry [Battelle Memorial Inst., Columbus, OH (United States); Ralston, Kevin [Battelle Memorial Inst., Columbus, OH (United States)

2015-06-30

The objectives of this project were to (1) develop a process to upgrade catalytic pyrolysis bio-oil, (2) investigate new upgrading catalysts suited for upgrading catalytic pyrolysis bio-oil, (3) demonstrate upgrading system operation for more than 1,000 hours using a single catalyst charge, and (4) produce a final upgraded product that can be blended to 30 percent by weight with petroleum fuels or that is compatible with existing petroleum refining operations. This project has, to the best of our knowledge, for the first time enabled a commercially viable bio-oil hydrotreatment process to produce renewable blend stock for transportation fuels.

Fiber-Optic Chemical Sensors and Fiber-Optic Bio-Sensors

Science.gov (United States)

Pospíšilová, Marie; Kuncová, Gabriela; Trögl, Josef

2015-01-01

This review summarizes principles and current stage of development of fiber-optic chemical sensors (FOCS) and biosensors (FOBS). Fiber optic sensor (FOS) systems use the ability of optical fibers (OF) to guide the light in the spectral range from ultraviolet (UV) (180 nm) up to middle infrared (IR) (10 µm) and modulation of guided light by the parameters of the surrounding environment of the OF core. The introduction of OF in the sensor systems has brought advantages such as measurement in flammable and explosive environments, immunity to electrical noises, miniaturization, geometrical flexibility, measurement of small sample volumes, remote sensing in inaccessible sites or harsh environments and multi-sensing. The review comprises briefly the theory of OF elaborated for sensors, techniques of fabrications and analytical results reached with fiber-optic chemical and biological sensors. PMID:26437407

Fiber-Optic Chemical Sensors and Fiber-Optic Bio-Sensors.

Science.gov (United States)

Pospíšilová, Marie; Kuncová, Gabriela; Trögl, Josef

2015-09-30

This review summarizes principles and current stage of development of fiber-optic chemical sensors (FOCS) and biosensors (FOBS). Fiber optic sensor (FOS) systems use the ability of optical fibers (OF) to guide the light in the spectral range from ultraviolet (UV) (180 nm) up to middle infrared (IR) (10 μm) and modulation of guided light by the parameters of the surrounding environment of the OF core. The introduction of OF in the sensor systems has brought advantages such as measurement in flammable and explosive environments, immunity to electrical noises, miniaturization, geometrical flexibility, measurement of small sample volumes, remote sensing in inaccessible sites or harsh environments and multi-sensing. The review comprises briefly the theory of OF elaborated for sensors, techniques of fabrications and analytical results reached with fiber-optic chemical and biological sensors.

Bio-mimetic Flow Control

Science.gov (United States)

Choi, Haecheon

2009-11-01

Bio-mimetic engineering or bio-mimetics is the application of biological methods and systems found in nature to the study and design of engineering systems and modern technology (from Wikipedia). The concept itself is old, but successful developments have been made recently, especially in the research field of flow control. The objective of flow control based on the bio-mimetic approach is to develop novel concepts for reducing drag, increasing lift and enhancing aerodynamic performance. For skin friction reduction, a few ideas have been suggested such as the riblet from shark, compliant surface from dolphin, microbubble injection and multiple front-body curvature from penguin, and V-shaped protrusion from sailfish. For form drag reduction, several new attempts have been also made recently. Examples include the V-shaped spanwise grooves from saguaro cactus, overall shape of box fish, longitudinal grooves on scallop shell, bill of swordfish, hooked comb on owl wing, trailing-edge protrusion on dragonfly wing, and fillet. For the enhancement of aerodynamic performance, focuses have been made on the birds, fish and insects: e.g., double layered feather of landing bird, leading-edge serration of humpback-whale flipper, pectoral fin of flying fish, long tail on swallowtail-butterfly wing, wing flapping motion of dragonfly, and alula in birds. Living animals adapt their bodies to better performance in multi purposes, but engineering requires single purpose in most cases. Therefore, bio-mimetic approaches often produce excellent results more than expected. However, they are sometimes based on people's wrong understanding of nature and produce unwanted results. Successes and failures from bio-mimetic approaches in flow control will be discussed in the presentation.

Towards a Plant Bio-Machine

DEFF Research Database (Denmark)

Nichele, Stefano; Risi, Sebastian; Tufte, Gunnar

2018-01-01

as a proof of concept that sensing capabilities of plants are a viable option for the development of plant bio-machines. Different future scenarios (some speculative) are discussed. The work herein is carried out as a collaboration between the EU project Flora Robotica and the EU project NASCENCE....

Development and Evaluation of an On-Line Educational Module for Volunteer Leaders on Bio-Security in Washington State 4-H Livestock Projects

Science.gov (United States)

Stevenson, Jill L.; Moore, Dale A.; Newman, Jerry; Schmidt, Janet L.; Smith, Sarah M.; Smith, Jean; Kerr, Susan; Wallace, Michael; BoyEs, Pat

2011-01-01

An on-line module on disease prevention was created for 4-H volunteer leaders who work with livestock projects in Washington to better prepare them to teach youth about bio-security and its importance in 4-H livestock projects. Evaluation of the module and usage statistics since the module's debut were collected and evaluated. The module increases…

Design of a Production Process to Enhance Optical Performance of 3(omega) Optics

International Nuclear Information System (INIS)

Prasad, R.R.; Bruere, J.R.; Halpin, J.; Lucero, P.; Mills, S.; Bernacil, M.; Hackel, R.P.

2003-01-01

Using the Phoenix pre-production conditioning facility we have shown that raster scanning of 3ω optics using a XeF excimer laser and mitigation of the resultant damage sites with a CO 2 laser can enhance their optical damage resistance. Several large-scale (43 cm x 43 cm) optics have been processed in this facility. A production facility capable of processing several large optics a week has been designed based on our experience in the pre-production facility. The facility will be equipped with UV conditioning lasers--351-nm XeF excimer lasers operating at 100 Hz and 23 ns. The facility will also include a CO 2 laser for damage mitigation, an optics stage for raster scanning large-scale optics, a damage mapping system (DMS) that images large-scale optics and can detect damage sites or precursors as small as ∼ 15 (micro)m, and two microscopes to image damage sites with ∼ 5 (micro)m resolution. The optics will be handled in a class 100 clean room, within the facility that will be maintained at class 1000

Enhancement of the transverse magneto-optical Kerr effect via resonant tunneling in trilayers containing magneto-optical metals

Energy Technology Data Exchange (ETDEWEB)

Girón-Sedas, J. A. [Departamento de Física, Universidad del Valle, AA 25360, Cali (Colombia); Centro de Investigación e Innovación en Bioinformática y Fotónica - CIBioFI, AA 25360 Cali (Colombia); Mejía-Salazar, J. R., E-mail: jrmejia3146@gmail.com [Instituto de Física de São Carlos, Universidade de São Paulo, CP 369, 13560-970 São Carlos, SP (Brazil); Moncada-Villa, E.; Porras-Montenegro, N. [Departamento de Física, Universidad del Valle, AA 25360, Cali (Colombia)

2016-07-18

We propose a way to enhance the transverse magneto-optical Kerr effect, by the excitation of resonant tunneling modes, in subwavelength trilayer structures featuring a dielectric slab sandwiched between two magneto-optical metallic layers. Depending on the magneto-optical layer widths, the proposed system may exhibit an extraordinary transverse magneto-optical Kerr effect, which makes it very attractive for the design and engineering of thin-film magneto-optical-based devices for future photonic circuits or fiber optical-communication systems.

Analytic Optimization of Near-Field Optical Chirality Enhancement

Science.gov (United States)

2017-01-01

We present an analytic derivation for the enhancement of local optical chirality in the near field of plasmonic nanostructures by tuning the far-field polarization of external light. We illustrate the results by means of simulations with an achiral and a chiral nanostructure assembly and demonstrate that local optical chirality is significantly enhanced with respect to circular polarization in free space. The optimal external far-field polarizations are different from both circular and linear. Symmetry properties of the nanostructure can be exploited to determine whether the optimal far-field polarization is circular. Furthermore, the optimal far-field polarization depends on the frequency, which results in complex-shaped laser pulses for broadband optimization. PMID:28239617

Fiber-Optic Chemical Sensors and Fiber-Optic Bio-Sensors

Directory of Open Access Journals (Sweden)

Marie Pospíšilová

2015-09-01

Full Text Available This review summarizes principles and current stage of development of fiber-optic chemical sensors (FOCS and biosensors (FOBS. Fiber optic sensor (FOS systems use the ability of optical fibers (OF to guide the light in the spectral range from ultraviolet (UV (180 nm up to middle infrared (IR (10 μm and modulation of guided light by the parameters of the surrounding environment of the OF core. The introduction of OF in the sensor systems has brought advantages such as measurement in flammable and explosive environments, immunity to electrical noises, miniaturization, geometrical flexibility, measurement of small sample volumes, remote sensing in inaccessible sites or harsh environments and multi-sensing. The review comprises briefly the theory of OF elaborated for sensors, techniques of fabrications and analytical results reached with fiber-optic chemical and biological sensors.

Enhancement of accuracy in shape sensing of surgical needles using optical frequency domain reflectometry in optical fibers.

Science.gov (United States)

Parent, Francois; Loranger, Sebastien; Mandal, Koushik Kanti; Iezzi, Victor Lambin; Lapointe, Jerome; Boisvert, Jean-Sébastien; Baiad, Mohamed Diaa; Kadoury, Samuel; Kashyap, Raman

2017-04-01

We demonstrate a novel approach to enhance the precision of surgical needle shape tracking based on distributed strain sensing using optical frequency domain reflectometry (OFDR). The precision enhancement is provided by using optical fibers with high scattering properties. Shape tracking of surgical tools using strain sensing properties of optical fibers has seen increased attention in recent years. Most of the investigations made in this field use fiber Bragg gratings (FBG), which can be used as discrete or quasi-distributed strain sensors. By using a truly distributed sensing approach (OFDR), preliminary results show that the attainable accuracy is comparable to accuracies reported in the literature using FBG sensors for tracking applications (~1mm). We propose a technique that enhanced our accuracy by 47% using UV exposed fibers, which have higher light scattering compared to un-exposed standard single mode fibers. Improving the experimental setup will enhance the accuracy provided by shape tracking using OFDR and will contribute significantly to clinical applications.

A bio-inspired apposition compound eye machine vision sensor system

International Nuclear Information System (INIS)

Davis, J D; Barrett, S F; Wright, C H G; Wilcox, M

2009-01-01

The Wyoming Information, Signal Processing, and Robotics Laboratory is developing a wide variety of bio-inspired vision sensors. We are interested in exploring the vision system of various insects and adapting some of their features toward the development of specialized vision sensors. We do not attempt to supplant traditional digital imaging techniques but rather develop sensor systems tailor made for the application at hand. We envision that many applications may require a hybrid approach using conventional digital imaging techniques enhanced with bio-inspired analogue sensors. In this specific project, we investigated the apposition compound eye and its characteristics commonly found in diurnal insects and certain species of arthropods. We developed and characterized an array of apposition compound eye-type sensors and tested them on an autonomous robotic vehicle. The robot exhibits the ability to follow a pre-defined target and avoid specified obstacles using a simple control algorithm.

Bio-Photons of Various Cellular Cultures and Tissues

Science.gov (United States)

Hann, Patrick; Knoesel, Ernst; Garzon, Maria; Lofland, Samuel; Pfieffer, Erik

2008-04-01

Since it is non-invasive, there has been increased research in the field of bio-optics. Many biological systems display an unusual phenomenon, delayed luminescence, produced by what is known as bio-photons. We present an apparatus and procedure for the detection of these ultra-weak photonic emissions using a single photon detection device. The results of bread yeast, saccramyces, and algae will be presented and compared to other reports in the literature.

The BEST project - BioEthanol for the Sustainable Transportation - a contribution to the environment of the metropolis; O projeto BEST - BioEtanol para o Transporte Sustentavel - uma contribuicao ao meio ambiente das metropoles

Energy Technology Data Exchange (ETDEWEB)

Gonzalez Velazquez, Silvia Maria Stortini; Santos, Sandra Maria Apolinario; Moreira, Jose Roberto; Melo, Euler Hoffmann; Coelho, Suani Teixeira [Centro Nacional de Referencia em Biomassa (CENBIO), Sao Paulo, SP (Brazil)], E-mail: silvia@iee.usp.br

2010-07-01

The BEST Project - Bio Ethanol for the Sustainable Transportation was an initiative of the European Union, coordinated by the Stockholm City Hall, at Sweden. This project gave incentives the use of ethanol, replacing the Diesel fuel, at the public transportation in Brazil and in the world. The used vehicles in the tests were monitored and evaluated to demonstrate the efficiency and environmental energy of the ethanol, and after the results, the BEST project and the European Union gave recommendations for the formulation of public politics of incentives to the use of technology.

Application study of Bio-FGD based on environmental safety during the coal combustion

Science.gov (United States)

Zhang, Pin

2018-05-01

Coal combustion produces a large amount of acidic gas, which is the main cause of acid rain and other natural disasters. Flue Gas Desulfurization (FGD) is a necessary requirement for clean coal combustion. Compared with the traditional chemical desulfurization technology, biological desulfurization has the advantages of low operating cost, without secondary pollution, low carbon emission and the additional economic benefits. The process and structure of BioDeSOx which as one of Bio-FGD technology is introduced. The major factors that influent BioDeSOx Bio- FGD system is the pH, oxidation reduction potential (-300 MV to -400MV), electrical conductivity, the adding amount of nutrient and temperature (30°C-40°C). Taking the Bio- FGD project of Yixing xielian thermal power plant as an example, the BioDeSOx technology was applied in this project. The environmental and economic benefits of the project were greater than the traditional desulfurization technology. With the continuous improvement of environmental safety standards, Bio- FGD technology will have broad application prospects.

tmBioC: improving interoperability of text-mining tools with BioC.

Science.gov (United States)

Khare, Ritu; Wei, Chih-Hsuan; Mao, Yuqing; Leaman, Robert; Lu, Zhiyong

2014-01-01

The lack of interoperability among biomedical text-mining tools is a major bottleneck in creating more complex applications. Despite the availability of numerous methods and techniques for various text-mining tasks, combining different tools requires substantial efforts and time owing to heterogeneity and variety in data formats. In response, BioC is a recent proposal that offers a minimalistic approach to tool interoperability by stipulating minimal changes to existing tools and applications. BioC is a family of XML formats that define how to present text documents and annotations, and also provides easy-to-use functions to read/write documents in the BioC format. In this study, we introduce our text-mining toolkit, which is designed to perform several challenging and significant tasks in the biomedical domain, and repackage the toolkit into BioC to enhance its interoperability. Our toolkit consists of six state-of-the-art tools for named-entity recognition, normalization and annotation (PubTator) of genes (GenNorm), diseases (DNorm), mutations (tmVar), species (SR4GN) and chemicals (tmChem). Although developed within the same group, each tool is designed to process input articles and output annotations in a different format. We modify these tools and enable them to read/write data in the proposed BioC format. We find that, using the BioC family of formats and functions, only minimal changes were required to build the newer versions of the tools. The resulting BioC wrapped toolkit, which we have named tmBioC, consists of our tools in BioC, an annotated full-text corpus in BioC, and a format detection and conversion tool. Furthermore, through participation in the 2013 BioCreative IV Interoperability Track, we empirically demonstrate that the tools in tmBioC can be more efficiently integrated with each other as well as with external tools: Our experimental results show that using BioC reduces >60% in lines of code for text-mining tool integration. The tmBioC toolkit

The GALAXIE all-optical FEL project

Energy Technology Data Exchange (ETDEWEB)

Rosenzweig, J. B.; Arab, E.; Andonian, G.; Cahill, A.; Fitzmorris, K.; Fukusawa, A.; Hoang, P.; Jovanovic, I.; Marcus, G.; Marinelli, A.; Murokh, A.; Musumeci, P.; Naranjo, B.; O' Shea, B.; O' Shea, F.; Ovodenko, A.; Pogorelsky, I.; Putterman, S.; Roberts, K.; Shumail, M. [Dept. of Physics and Astronomy, University of California, Los Angeles, 405 Hilgard Ave., Los Angeles, CA 90034 (United States); Dept. of Mechanical and Nuclear Engineering, Pennsylvania State University, University Park, PA 16802 (United States); Dept. of Physics and Astronomy, University of California, Los Angeles, 405 Hilgard Ave., Los Angeles, CA 90034 (United States); and others

2012-12-21

We describe a comprehensive project, funded under the DARPA AXiS program, to develop an all-optical table-top X-ray FEL based on dielectric acceleration and electromagnetic undulators, yielding a compact source of coherent X-rays for medical and related applications. The compactness of this source demands that high field (>GV/m) acceleration and undulation-inducing fields be employed, thus giving rise to the project's acronym: GV/m AcceLerator And X-ray Integrated Experiment (GALAXIE). There are numerous physics and technical hurdles to surmount in this ambitious scenario, and the integrated solutions include: a biharmonic photonic TW structure, 200 micron wavelength electromagnetic undulators, 5 {mu}m laser development, ultra-high brightness magnetized/asymmetric emittance electron beam generation, and SASE FEL operation. We describe the overall design philosophy of the project, the innovative approaches to addressing the challenges presented by the design, and the significant progress towards realization of these approaches in the nine months since project initialization.

Biologically active compounds to develop bioelectronics and bio photonics

Science.gov (United States)

Mishra, Ashok Kumar; Tiwari, Satya Prakash

2018-05-01

Recent reports on biomaterials and biological systems at nano scale provide researchers with a fertile ground with regard to materials, enabling bioelectronics, bio sensing and new nanotechnologies that cover a wide range of applications. The signal transductions have been reported for many biological phenomenons and new field of biophysics namely Biosensors and Bioelectronics have been emerged out. The advances in the study of various aspects of bio molecules like electrical, optical, thermal etc has established the interesting area of research like biophotonics, nanobiotechnology, molecular solid, molecular liquids, bio instrumentation etc. The present study discusses the some aspects and applications of the bioprocess yields nanostructures that are nearly flawless in composition, stereo specific in structure, and flexible. Furthermore, these biomaterials are environment friendly because they are biodegradable in nature. Biological compounds are self assembled into complex nanostructures and behave like a system possessing long range hierarchical nanoscale order. In addition, chemical modification and genetic engineering can be used to modify bio materials to enhance a specific property. Various biomaterials have been reported which allow nanostructure control for nano photonic applications. The dielectric and conduction properties of the bio molecules have been the subject of many investigations. As a result, there exist a wealth of valuable information on the charge transport and rotational properties of many bio molecules. Amino acids and proteins, nucleic acids, lipids, cell and tissues have been characterized over a wide frequency spectrum ranging from a few hertz to Giga hertz. In certain cases, dielectric measurements have been exploited to probe the physical changes taking place in biologically important structures, for example, in lipid phase transition process in membrane. The phase transition in membrane may be analyzed by applying the theory for

Performance and enhanced mechanism of a novel bio-diatomite biofilm pretreatment process treating polluted raw water.

Science.gov (United States)

Yang, Guang-feng; Feng, Li-juan; Wang, Sha-fei; Yang, Qi; Xu, Xiang-yang; Zhu, Liang

2015-09-01

A lab-scale novel bio-diatomite biofilm process (BDBP) was established for the polluted raw water pretreatment in this study. Results showed that a shorter startup period of BDBP system was achieved under the completely circulated operation mode, and the removal efficiencies of nitrogen and disinfection by-product precursor were effective at low hydraulic retention time of 2-4 h due to high biomass attached to the carrier and diatomite. A maximum NH4(+)-N oxidation potential predicted by modified Stover-Kincannon model was 333.3 mg L(-1) d(-1) in the BDBP system, which was 4.7 times of that in the control reactor. Results demonstrated that the present of bio-diatomite favors the accumulation of functional microbes in the oligotrophic niche, and the pollutants removal performance of this novel process was enhanced for polluted raw water pretreatment. Copyright © 2015 Elsevier Ltd. All rights reserved.

The Ocean Colour Climate Change Initiative: III. A Round-Robin Comparison on In-Water Bio-Optical Algorithms

Science.gov (United States)

Brewin, Robert J.W.; Sathyendranath, Shubha; Muller, Dagmar; Brockmann, Carsten; Deschamps, Pierre-Yves; Devred, Emmanuel; Doerffer, Roland; Fomferra, Norman; Franz, Bryan; Grant, Mike;

Multiparameter fiber optic sensing system for monitoring enhanced geothermal systems

Energy Technology Data Exchange (ETDEWEB)

Challener, William A

2014-12-04

The goal of this project was to design, fabricate and test an optical fiber cable which supports multiple sensing modalities for measurements in the harsh environment of enhanced geothermal systems. To accomplish this task, optical fiber was tested at both high temperatures and strains for mechanical integrity, and in the presence of hydrogen for resistance to darkening. Both single mode (SM) and multimode (MM) commercially available optical fiber were identified and selected for the cable based on the results of these tests. The cable was designed and fabricated using a tube-within-tube construction containing two MM fibers and one SM fiber, and without supporting gel that is not suitable for high temperature environments. Commercial fiber optic sensing instruments using Raman DTS (distributed temperature sensing), Brillouin DTSS (distributed temperature and strain sensing), and Raleigh COTDR (coherent optical time domain reflectometry) were selected for field testing. A microelectromechanical systems (MEMS) pressure sensor was designed, fabricated, packaged, and calibrated for high pressure measurements at high temperatures and spliced to the cable. A fiber Bragg grating (FBG) temperature sensor was also spliced to the cable. A geothermal well was selected and its temperature and pressure were logged. The cable was then deployed in the well in two separate field tests and measurements were made on these different sensing modalities. Raman DTS measurements were found to be accurate to ±5°C, even with some residual hydrogen darkening. Brillouin DTSS measurements were in good agreement with the Raman results. The Rayleigh COTDR instrument was able to detect some acoustic signatures, but was generally disappointing. The FBG sensor was used to determine the effects of hydrogen darkening, but drift over time made it unreliable as a temperature or pressure sensor. The MEMS sensor was found to be highly stable and accurate to better than its 0.1% calibration.

Assessing bio-available silver released from silver nanoparticles embedded in silica layers using the green algae Chlamydomonas reinhardtii as bio-sensors

Energy Technology Data Exchange (ETDEWEB)

Pugliara, Alessandro [nMat group-CEMES (Centre d' Elaboration de Matériaux et d' Etudes Structurales)-CNRS, Université de Toulouse, 29 rue Jeanne Marvig, BP 94347, F-31055 Toulouse Cedex 4 (France); LAPLACE (LAboratoire PLAsma et Conversion d' Energie), Université de Toulouse, CNRS, UPS, INPT, 118 route de Narbonne, F-31062 Toulouse (France); Makasheva, Kremena; Despax, Bernard [LAPLACE (LAboratoire PLAsma et Conversion d' Energie), Université de Toulouse, CNRS, UPS, INPT, 118 route de Narbonne, F-31062 Toulouse (France); Bayle, Maxime; Carles, Robert; Benzo, Patrizio; BenAssayag, Gérard; Pécassou, Béatrice [nMat group-CEMES (Centre d' Elaboration de Matériaux et d' Etudes Structurales)-CNRS, Université de Toulouse, 29 rue Jeanne Marvig, BP 94347, F-31055 Toulouse Cedex 4 (France); Sancho, Maria Carmen; Navarro, Enrique [IPE (Instituto Pirenaico de Ecología)-CSIC, Avda. Montañana 1005, Zaragoza 50059 (Spain); Echegoyen, Yolanda [I3A, Department of Analytical Chemistry, University of Zaragoza, C/ María de Luna 3, 50018, Zaragoza (Spain); Bonafos, Caroline, E-mail: bonafos@cemes.fr [nMat group-CEMES (Centre d' Elaboration de Matériaux et d' Etudes Structurales)-CNRS, Université de Toulouse, 29 rue Jeanne Marvig, BP 94347, F-31055 Toulouse Cedex 4 (France)

2016-09-15

Silver nanoparticles (AgNPs) because of their strong antibacterial activity are widely used in health-care sector and industrial applications. Their huge surface-volume ratio enhances the silver release compared to the bulk material, leading to an increased toxicity for microorganisms sensitive to this element. This work presents an assessment of the toxic effect on algal photosynthesis due to small (size < 20 nm) AgNPs embedded in silica layers. Two physical approaches were originally used to elaborate the nanocomposite structures: (i) low energy ion beam synthesis and (ii) combined silver sputtering and plasma polymerization. These techniques allow elaboration of a single layer of AgNPs embedded in silica films at defined nanometer distances (from 0 to 7 nm) beneath the free surface. The structural and optical properties of the nanostructures were studied by transmission electron microscopy and optical reflectance. The silver release from the nanostructures after 20 h of immersion in buffered water was measured by inductively coupled plasma mass spectrometry and ranges between 0.02 and 0.49 μM. The short-term toxicity of Ag to photosynthesis of Chlamydomonas reinhardtii was assessed by fluorometry. The obtained results show that embedding AgNPs reduces the interactions with the buffered water free media, protecting the AgNPs from fast oxidation. The release of bio-available silver (impacting on the algal photosynthesis) is controlled by the depth at which AgNPs are located for a given host matrix. This provides a procedure to tailor the toxicity of nanocomposites containing AgNPs. - Highlights: • Controlled synthesis of 2D arrays of silver nanoparticles embedded in silica. • Assessing bio-available silver release using the green algae as bio-sensors. • The Ag release can be controlled by the distance nanoparticles/dielectric surface. • All the Ag released in solution is in the form of Ag{sup +} ions. • Toxicity comparable to similar concentrations of

Enhancement of magneto-optical Faraday effects and extraordinary optical transmission in a tri-layer structure with rectangular annular arrays.

Science.gov (United States)

Lei, Chengxin; Chen, Leyi; Tang, Zhixiong; Li, Daoyong; Cheng, Zhenzhi; Tang, Shaolong; Du, Youwei

2016-02-15

The properties of optics and magneto-optical Faraday effects in a metal-dielectric tri-layer structure with subwavelength rectangular annular arrays are investigated. It is noteworthy that we obtained the strongly enhanced Faraday rotation of the desired sign along with high transmittance by optimizing the parameters of the nanostructure in the visible spectral ranges. In this system, we obtained two extraordinary optical transmission (EOT) resonant peaks with enhanced Faraday rotations, whose signs are opposite, which may provide the possibility of designing multi-channel magneto-optical devices. Study results show that the maximum of the figure of merit (FOM) of the structure can be obtained between two EOT resonant peaks accompanied by an enhanced Faraday rotation. The positions of the maximum value of the FOM and resonant peaks of transmission along with a large Faraday rotation can be tailored by simply adjusting the geometric parameters of our models. These research findings are of great importance for future applications of magneto-optical devices.

Nanoantennas for enhancing and confining the magnetic optical field

Science.gov (United States)

Grosjean, Thierry; Mivelle, Mathieu; Baida, Fadi I.; Burr, Geoffrey W.; Fischer, Ulrich C.

2011-05-01

We propose different optical antenna structures for enhancing and confining the magnetic optical field. A common feature of these structures are concave corners in thin metal films as locations of the enhanced magnetic field. This proposal is inspired by Babinet's principle as the concave edges are the complementary structures to convex metal corners, which are known to be locations of a strongly enhanced electric field. Bowtie antennas and the bowtie apertures of appropriate size were shown to exhibit resonances in the infrared frequency range with an especially strong enhancement of the electrical field in the gap between 2 convex metal corners. We show by numerical calculations, that the complementary structures, the complementary bowtie aperture - the diabolo antenna - and the complementary bow tie antenna - two closely spaced triangular apertures in a metal film with a narrow gap between two opposing concave corners - exhibit resonances with a strongly enhanced magnetic field at the narrow metal constriction between the concave corners. We suggest sub-wavelength circuits of concave and convex corners as building blocks of planar metamaterials.

Microbial biodiversity of Tang and Pirgal mud volcanoes and evaluation of bio-emulsifier and bio-demulsifier activities of Capnophile bacteria

Directory of Open Access Journals (Sweden)

Yasaman Parsia

2017-12-01

Full Text Available The data presented in this article is related to the Master thesis; entitled “Survey Aerobic Microbial Diversity Mud Volcanoes in Chabahar and Khash Ports in Southern Iran” by the first author of this article, year 2011, Islamic Azad University, Iran (reference number (Parsia, 2011 [1] of this article. This article shows microbial biodiversity and evaluates bio-emulsifier and bio-demulsifier abilities of capnophile isolates, in order to introduce a superior isolate for the Microbial Enhanced Oil Recovery (MEOR process in the petrochemical industry. Keywords: Mud volcanoes, Biodiversity, Bio-emulsification, Bio-demulsification, Petrochemistry

Soot and chemiluminescence in diesel combustion of bio-derived, oxygenated and reference fuels

NARCIS (Netherlands)

Klein-Douwel, R.J.H.; Donkerbroek, A.J.; Vliet, A.P. van; Boot, M.D.; Somers, L.M.T.; Baert, R.S.G.; Dam, N.J.; Meulen, J.J. ter

2009-01-01

High-speed imaging, spectroscopy and thermodynamical characterization are applied to an optically accessible, heavy-duty diesel engine in order to compare sooting and chemiluminescence behaviour of bio-derived, oxygenated fuels and various reference fuels. The fuels concerned include the bio-derived

EXCESS OPTICAL ENHANCEMENT OBSERVED WITH ARCONS FOR EARLY CRAB GIANT PULSES

Energy Technology Data Exchange (ETDEWEB)

Strader, M. J.; Mazin, B. A.; Spiro Jaeger, G. V.; Gwinn, C. R.; Meeker, S. R.; Szypryt, P.; Van Eyken, J. C.; Marsden, D.; Walter, A. B.; Ulbricht, G. [Department of Physics, University of California, Santa Barbara, CA 93106 (United States); Johnson, M. D. [Harvard-Smithsonian Center for Astrophysics, 60 Garden Street, Cambridge, MA 02138 (United States); O' Brien, K. [Department of Physics, University of Oxford, Denys Wilkinson Building, Keble Road, Oxford OX1 3RH (United Kingdom); Stoughton, C. [Fermilab Center for Particle Astrophysics, Batavia, IL 60510 (United States); Bumble, B. [NASA Jet Propulsion Laboratory, 4800 Oak Grove Drive, Pasadena, CA 91125 (United States)

2013-12-10

We observe an extraordinary link in the Crab pulsar between the enhancement of an optical pulse and the timing of the corresponding giant radio pulse. At optical through infrared wavelengths, our observations use the high time resolution of ARray Camera for Optical to Near-IR Spectrophotometry, a unique superconducting energy-resolving photon-counting array at the Palomar 200 inch telescope. At radio wavelengths, we observe with the Robert C. Byrd Green Bank Telescope and the Green Bank Ultimate Pulsar Processing Instrument backend. We see an 11.3% ± 2.5% increase in peak optical flux for pulses that have an accompanying giant radio pulse arriving near the peak of the optical main pulse, in contrast to a 3.2% ± 0.5% increase when an accompanying giant radio pulse arrives soon after the optical peak. We also observe that the peak of the optical main pulse is 2.8% ± 0.8% enhanced when there is a giant radio pulse accompanying the optical interpulse. We observe no statistically significant spectral differences between optical pulses accompanied by and not accompanied by giant radio pulses. Our results extend previous observations of optical-radio correlation to the time and spectral domains. Our refined temporal correlation suggests that optical and radio emission are indeed causally linked, and the lack of spectral differences suggests that the same mechanism is responsible for all optical emission.

EXCESS OPTICAL ENHANCEMENT OBSERVED WITH ARCONS FOR EARLY CRAB GIANT PULSES

International Nuclear Information System (INIS)

Strader, M. J.; Mazin, B. A.; Spiro Jaeger, G. V.; Gwinn, C. R.; Meeker, S. R.; Szypryt, P.; Van Eyken, J. C.; Marsden, D.; Walter, A. B.; Ulbricht, G.; Johnson, M. D.; O'Brien, K.; Stoughton, C.; Bumble, B.

2013-01-01

We observe an extraordinary link in the Crab pulsar between the enhancement of an optical pulse and the timing of the corresponding giant radio pulse. At optical through infrared wavelengths, our observations use the high time resolution of ARray Camera for Optical to Near-IR Spectrophotometry, a unique superconducting energy-resolving photon-counting array at the Palomar 200 inch telescope. At radio wavelengths, we observe with the Robert C. Byrd Green Bank Telescope and the Green Bank Ultimate Pulsar Processing Instrument backend. We see an 11.3% ± 2.5% increase in peak optical flux for pulses that have an accompanying giant radio pulse arriving near the peak of the optical main pulse, in contrast to a 3.2% ± 0.5% increase when an accompanying giant radio pulse arrives soon after the optical peak. We also observe that the peak of the optical main pulse is 2.8% ± 0.8% enhanced when there is a giant radio pulse accompanying the optical interpulse. We observe no statistically significant spectral differences between optical pulses accompanied by and not accompanied by giant radio pulses. Our results extend previous observations of optical-radio correlation to the time and spectral domains. Our refined temporal correlation suggests that optical and radio emission are indeed causally linked, and the lack of spectral differences suggests that the same mechanism is responsible for all optical emission

Optical nonlinearity enhancement with graphene-decorated silicon waveguides

Science.gov (United States)

Ishizawa, Atsushi; Kou, Rai; Goto, Takahiro; Tsuchizawa, Tai; Matsuda, Nobuyuki; Hitachi, Kenichi; Nishikawa, Tadashi; Yamada, Koji; Sogawa, Tetsuomi; Gotoh, Hideki

2017-04-01

Broadband on-chip optical frequency combs (OFCs) are important for expanding the functionality of photonic integrated circuits. Here, we demonstrate a huge local optical nonlinearity enhancement using graphene. A waveguide is decorated with graphene by precisely manipulating graphene’s area and position. Our approach simultaneously achieves both an extremely efficient supercontinuum and ultra-short pulse generation. With our graphene-decorated silicon waveguide (G-SWG), we have achieved enhanced spectral broadening of femtosecond pump pulses, along with an eightfold increase in the output optical intensity at a wavelength approximately 200 nm shorter than that of the pump pulses. We also found that this huge nonlinearity works as a compressor that effectively compresses pulse width from 80 to 15.7 fs. Our results clearly show the potential for our G-SWG to greatly boost the speed and capacity of future communications with lower power consumption, and our method will further decrease the required pump laser power because it can be applied to decorate various kinds of waveguides with various two-dimensional materials.

Bio-inspired composites with functionally graded platelets exhibit enhanced stiffness.

Science.gov (United States)

Tapse, Sanjay; S, Anup

2017-11-09

Unidirectional composites inspired from biological materials such as nacre, are composed of stiff platelets arranged in a staggered manner within a soft matrix. Elaborate analyses have been conducted on the aforementioned composites and they are found to have excellent mechanical properties like stiffness, strength and fracture toughness. The superior properties exhibited by these composites have been proved to be the result of its unique structure. An emerging development in the field of composite structures is Functionally Graded Composites(FGC), whose properties vary spatially and possess enhanced thermo-mechanical properties. In this paper, the platelets are functionally graded with its Young's Modulus varying parabolically along the length. Two different models - namely, Tension Shear Chain Model and Minimisation of Complementary Energy Model have been employed to obtain the stiffness of the overall composite analytically. The effect of various parameters that define the composite model such as overlapping length between any two neighbouring platelets, different gradation parameters and platelet aspect ratio on the overall mechanical properties have been studied. Composites with functionally graded platelets are found to possess enhanced stiffness (upto 14% higher) for certain values of these parameters. The obtained solutions have been validated using Finite Element Analysis. Bio-inspired composites with functionally graded platelets can be engineered for structural applications, such as in automobile, aerospace and aircraft industry, where stiffness plays a crucial role. © 2017 IOP Publishing Ltd.

Plasmon-enhanced optically stimulated luminescence

International Nuclear Information System (INIS)

Guidelli, E. J.; Baffa, O.; Ramos, A. P.

2015-10-01

Full text: Optically Stimulated Luminescence dosimeters (OSLD) have been largely used for personal, medical, and industrial radiation dosimetry. Developing highly sensitive and small-sized radiation detectors and dosimeters is essential for improving spatial resolution and consequently diagnosis quality and treatment efficacy in the case of applications in radiodiagnosis and radiation therapy, for instance. Conventional methods to improve the OSLD sensitivity consist of doping and co-doping the host materials with atoms of other elements, thereby increasing the amount of trapping and/or luminescent centers. Our group is researching on the use of the plasmon properties of noble metal nanoparticles to increase OSL intensity. Upon incidence of a light beam with appropriate resonant wavelengths, the oscillation of the free electrons at the nanoparticle surface originates the Localized Surface Plasmons (LSP) and the consequent plasmon resonance band. The interaction between the LSP and the surrounding luminescent material leads to new optical properties largely employed for enhancing several luminescent processes. Here we will show our results regarding the use of LSP to increase OSLD sensitivity. The interaction between the traps/luminescent centers and the plasmons depends on the distance between them, on the plasmon resonance band intensity and position, as well as on the surrounding medium. Therefore, the plasmon-enhanced luminescence is a promising tool to develop more sensitive and miniaturized OSLD. (Author)

Plasmon-enhanced optically stimulated luminescence

Energy Technology Data Exchange (ETDEWEB)

Guidelli, E. J.; Baffa, O. [Universidade de Sao Paulo, Faculdade de Filosofia, Ciencias e Letras de Ribeirao Preto, Departamento de Fisica, Av. Bandeirantes 3900, 14040-901 Ribeirao Preto, Sao Paulo (Brazil); Ramos, A. P., E-mail: ederguidelli@gmail.com [Universidade de Sao Paulo, Faculdade de Filosofia, Ciencias e Letras de Ribeirao Preto, Departamento de Quimica, Av. Bandeirantes 3900, 14040-901 Ribeirao Preto, Sao Paulo (Brazil)

2015-10-15

Full text: Optically Stimulated Luminescence dosimeters (OSLD) have been largely used for personal, medical, and industrial radiation dosimetry. Developing highly sensitive and small-sized radiation detectors and dosimeters is essential for improving spatial resolution and consequently diagnosis quality and treatment efficacy in the case of applications in radiodiagnosis and radiation therapy, for instance. Conventional methods to improve the OSLD sensitivity consist of doping and co-doping the host materials with atoms of other elements, thereby increasing the amount of trapping and/or luminescent centers. Our group is researching on the use of the plasmon properties of noble metal nanoparticles to increase OSL intensity. Upon incidence of a light beam with appropriate resonant wavelengths, the oscillation of the free electrons at the nanoparticle surface originates the Localized Surface Plasmons (LSP) and the consequent plasmon resonance band. The interaction between the LSP and the surrounding luminescent material leads to new optical properties largely employed for enhancing several luminescent processes. Here we will show our results regarding the use of LSP to increase OSLD sensitivity. The interaction between the traps/luminescent centers and the plasmons depends on the distance between them, on the plasmon resonance band intensity and position, as well as on the surrounding medium. Therefore, the plasmon-enhanced luminescence is a promising tool to develop more sensitive and miniaturized OSLD. (Author)

Enhanced oil recovery projects data base

Energy Technology Data Exchange (ETDEWEB)

Pautz, J.F.; Sellers, C.A.; Nautiyal, C.; Allison, E.

1992-04-01

A comprehensive enhanced oil recovery (EOR) project data base is maintained and updated at the Bartlesville Project Office of the Department of Energy. This data base provides an information resource that is used to analyze the advancement and application of EOR technology. The data base has extensive information on 1,388 EOR projects in 569 different oil fields from 1949 until the present, and over 90% of that information is contained in tables and graphs of this report. The projects are presented by EOR process, and an index by location is provided.

Optimising the bio-piling of weathered hydrocarbons within a risk management framework

International Nuclear Information System (INIS)

Hough, R.; Brassington, K.; Sinke, A.; Crossley, J.; Paton, G.; Semple, K.; Risdon, G.; Jacobson, Ch.; Daly, P.; Jackman, S.; Lethbridge, G.; Pollard, S.

2005-01-01

Thirty years of research into petroleum microbiology and bio-remediation have bypassed an important observation - that many hydrocarbon contaminated sites posing potential risks to human health harbour weathered, 'mid-distillate' or heavy oils rather than 'fresh product'. Ex-situ bio-piling is an important technology for treating soils contaminated with weathered hydrocarbons. However, its performance continues to be represented by reference to reductions in the hydrocarbon 'load' in the soils being treated, rather than reductions in the risks posed by the hydrocarbon contamination. The absence of 'risk' from the vocabulary of many operators and remediation projects reduces stakeholder (regulatory, investor, landowner, and public) confidence in remediation technologies, and subsequently limits the market potential of these technologies. Stakeholder confidence in the bio-piling of weathered hydrocarbons may be improved by demonstrating process optimisation within a validated risk management framework. To address these issues, a consortium led by Cranfield University's Integrated Waste Management Centre has secured funding from the UK Government's Bio-remediation LINK programme. Project PROMISE (involving BP, SecondSite Regeneration Ltd., Dew Remediation Ltd., TES Bretby (Mowlem Group), technology translators PERA, and academics from Aberdeen, Cranfield and Lancaster Universities) aims to improve market confidence in bio-piling by demonstrating how this treatment may be applied within a risk management context. For weathered hydrocarbons in particular, the underpinning scientific components of process control, waste diagnostics, environmental fate modelling, and risk assessment have yet to be fully integrated to allow bio-piling projects to be verified with improved confidence. The Joint Research Council Review of Bio-remediation recognised this in calling explicitly for the positioning of bio-remediation within a risk management framework. The PERF report (Thermo

Slow-light enhanced optical detection in liquid-infiltrated photonic crystals

DEFF Research Database (Denmark)

Pedersen, Martin Erland Vestergaard; Rishøj, Lars Søgaard; Steffensen, Henrik

2007-01-01

Slow-light enhanced optical detection in liquid-infiltrated photonic crystals is theoretically studied. Using a scattering-matrix approach and the Wigner–Smith delay time concept, we show that optical absorbance benefits both from slow-light phenomena as well as a high filling factor of the energy...... residing in the liquid. Utilizing strongly dispersive photonic crystal structures, we numerically demonstrate how liquid-infiltrated photonic crystals facilitate enhanced light–matter interactions, by potentially up to an order of magnitude. The proposed concept provides strong opportunities for improving...

Peptide Integrated Optics.

Science.gov (United States)

Handelman, Amir; Lapshina, Nadezda; Apter, Boris; Rosenman, Gil

2018-02-01

Bio-nanophotonics is a wide field in which advanced optical materials, biomedicine, fundamental optics, and nanotechnology are combined and result in the development of biomedical optical chips. Silk fibers or synthetic bioabsorbable polymers are the main light-guiding components. In this work, an advanced concept of integrated bio-optics is proposed, which is based on bioinspired peptide optical materials exhibiting wide optical transparency, nonlinear and electrooptical properties, and effective passive and active waveguiding. Developed new technology combining bottom-up controlled deposition of peptide planar wafers of a large area and top-down focus ion beam lithography provides direct fabrication of peptide optical integrated circuits. Finding a deep modification of peptide optical properties by reconformation of biological secondary structure from native phase to β-sheet architecture is followed by the appearance of visible fluorescence and unexpected transition from a native passive optical waveguiding to an active one. Original biocompatibility, switchable regimes of waveguiding, and multifunctional nonlinear optical properties make these new peptide planar optical materials attractive for application in emerging technology of lab-on-biochips, combining biomedical photonic and electronic circuits toward medical diagnosis, light-activated therapy, and health monitoring. © 2017 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Machine learning enhanced optical distance sensor

Science.gov (United States)

Amin, M. Junaid; Riza, N. A.

2018-01-01

Presented for the first time is a machine learning enhanced optical distance sensor. The distance sensor is based on our previously demonstrated distance measurement technique that uses an Electronically Controlled Variable Focus Lens (ECVFL) with a laser source to illuminate a target plane with a controlled optical beam spot. This spot with varying spot sizes is viewed by an off-axis camera and the spot size data is processed to compute the distance. In particular, proposed and demonstrated in this paper is the use of a regularized polynomial regression based supervised machine learning algorithm to enhance the accuracy of the operational sensor. The algorithm uses the acquired features and corresponding labels that are the actual target distance values to train a machine learning model. The optimized training model is trained over a 1000 mm (or 1 m) experimental target distance range. Using the machine learning algorithm produces a training set and testing set distance measurement errors of learning. Applications for the proposed sensor include industrial scenario distance sensing where target material specific training models can be generated to realize low <1% measurement error distance measurements.

Slow light enhanced optical nonlinearity in a silicon photonic crystal coupled-resonator optical waveguide.

Science.gov (United States)

Matsuda, Nobuyuki; Kato, Takumi; Harada, Ken-Ichi; Takesue, Hiroki; Kuramochi, Eiichi; Taniyama, Hideaki; Notomi, Masaya

2011-10-10

We demonstrate highly enhanced optical nonlinearity in a coupled-resonator optical waveguide (CROW) in a four-wave mixing experiment. Using a CROW consisting of 200 coupled resonators based on width-modulated photonic crystal nanocavities in a line defect, we obtained an effective nonlinear constant exceeding 10,000 /W/m, thanks to slow light propagation combined with a strong spatial confinement of light achieved by the wavelength-sized cavities.

Enhancement Of Sensing Capabilities And Functionalization Of Optical Microresonators

Science.gov (United States)

Cocking, Alexander

Optical microresonators have been demonstrated to provide a large enhancement in electric field by containing an resonant mode in a very small volume. This resonant enhancement is proportional to the quality of the resonator, which for microspheres has been demonstrated to be on the order of 1010. These devices can be leveraged to greatly improve light-matter interaction and for this reason the theoretical background of optical microresonators is discussed in the second chapter. This includes the use of COMSOL Multiphysics to model the mode structure and scattering from different resonator geometries. The second chapter also contains details on the fabrication and experimental design of optical microresonators. This includes the fabrication of fiber tapers for evanescent wave coupling into the devices. Once the theoretical framework for utilizing resonators as tools for enhancement has been established in the second chapter, we progress to the discussion of the microbubble geometry and its potential for use as an on-chip sensor system. Topics covered include design, fabrication, and theoretical analysis of the mode structure in this geometry. Modal interaction with a liquid filled microbubble is demonstrated. Additionally, the use of microbubble resonators as highly accurate temperature sensors is demonstrated experimentally and theoretically. In chapter 4 we investigate the use of silica microspheres as sensing devices; specifically, using them for the purpose of sensing nano-particles and chemicals in incredibly minute quantities. In this section microresonators are demonstrated to provide enhancement to Raman scattering from nano-scale particles. This configuration retains the traditional sensing methods of resonators by observing mode shifting and splitting in the resonance spectrum, while adding in a label-free sensing ability to determine material composition on adhered micro and nanoparticles. The fifth chapter discusses the characterization of a new class

A test to illustrate the effects of BioSolve on the mobility of contaminated soils

International Nuclear Information System (INIS)

Jackson, Lorri M.

1999-01-01

Mountain States BioSolve manufactures products for in-situ bioremediation projects. One of their products, BioSolve, desorbs and emulsifies hydrocarbons in a contaminated substrate. BioSolve is a blend of water-based, biodegradable surfactants which were engineered as a clean-up and mitigation agent for hydrocarbon products. Its basic mechanism is to emulsify the hydrocarbon into small encapsulated particles in a water/oxygen-bearing solution, desorbing hydrocarbon molecules from soil particles. This allows bacteria to more effectively metabolize the contaminate. During desorption, Total Petroleum Hydrocarbons (TPH) levels may increase shortly after application due to the removal of contaminate from soil particles which increases the total recoverable hydrocarbon. This allows the hydrocarbon, in the pump and treat process, to become mobile, and thus carried with the water to the recovery wells where it can be removed. This testing does not address pump and treat technology but only the increased surface area for bioremediation enhancement

Enhancement of the optical image with a DC blocked spiral holographic pattern

International Nuclear Information System (INIS)

Hwang, Sung-In; Lee, Jung-Kyun; Song, Dong-Hoon; Choi, Dae-Sik; Ko, Do-Kyeong

2011-01-01

A modification of microscopy using a spiral phase plate, which enhanced the optical image by blocking the DC part of the object spectrum is presented. In conventional differential-interference-contrast microscopy, enhancement of optical images is achieved by interference of mutual coherent beams which experience different optical phases. This method increases the contrast of the optical image compared to normal microscopy, but the image still has some blurring around the edge of the sample. Our modification consists of placing a DC blocking region on an optical spatial filter, which allows us to achieve a sharp edge compared to the conventional one. By patterning the grating of the circular area in the center with a different direction (π/4 in our case), we could redirect the DC part of the Fourier component that passed through the center of the phase plate. By eliminating the DC part of the object spectrum, we could get a highly enhanced image and clearly observed the inside of the cheek cell, which was invisible otherwise.

Stabilization of Bio-Oil Fractions for Insertion into Petroleum Refineries

Energy Technology Data Exchange (ETDEWEB)

Brown, Robert C. [Iowa State Univ., Ames, IA (United States); Smith, Ryan [Iowa State Univ., Ames, IA (United States); Wright, Mark [Iowa State Univ., Ames, IA (United States); Elliott, Douglas [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Resasco, Daniel [Univ. of Oklahoma, Norman, OK (United States); Crossley, Steven [Univ. of Oklahoma, Norman, OK (United States)

2014-09-28

This project is part of a collaboration effort between Iowa State University (ISU), University of Oklahoma (OK) and Pacific Northwest National Laboratory (PNNL). The purpose of this project is to stabilize bio-oil fractions and improve their suitability for insertion into petroleum refineries. Bio-oil from fast pyrolysis of biomass is a complex mixture of unstable organic compounds. These organic compounds react under standard room conditions resulting in increases in bio-oil viscosity and water content – both detrimental for bio-oil storage and transportation. This study employed fractionation and upgrading systems to improve the stability of bio-oil. The fractionation system consists of a series of condensers, and electrostatic precipitators designed to separate bio-oil into five fractions: soluble carbohydrates (SF1&2), clean phenolic oligomers (CPO) and middle fraction (SF3&4), light oxygenates (SF5). A two-stage upgrading process was designed to process bio-oil stage fractions into stable products that can be inserted into a refinery. In the upgrading system, heavy and middle bio-oil fractions were upgraded into stable oil via cracking and subsequent hydrodeoxygenation. The light oxygenate fraction was steam reformed to provide a portion of requisite hydrogen for hydroprocessing. Hydrotreating and hydrocracking employed hydrogen from natural gas, fuel gas and light oxygenates reforming. The finished products from this study consist of gasoline- and diesel-blend stock fuels.

Optical wireless links with enhanced linearity and selectivity [Invited

Science.gov (United States)

Green, Roger J.; Sweet, C.; Idrus, S.

2005-10-01

Optical wireless is an attractive medium as an alternative to optical fiber communications, and also to RF, because of its high bandwidth and relative ease of use, especially when it comes to deployment in new physical situations. We describe an optical wireless link approach that offers a performance that gives analog transmission with significantly reduced distortion levels and enhanced reception sensitivity by combining a novel hybrid detector-amplifier technique. Reduction of distortion by 40 dB and improvement in sensitivity of 20-30 dB is possible, using the techniques described.

The way to bio heat. A manual on production of heat from bio fuel; Veien til biovarme. Manual for produksjon av ferdigvarme fra biobrensel

Energy Technology Data Exchange (ETDEWEB)

Breen, Tor; Liodden, Ole Joergen; Farsund Oeystein; Martinsen, Arnold Kyrre

2008-09-26

The manual is a tool in the process of planning and establishing a bio heat company. It focuses on both technical, administrative, and economic aspects. Part 1 of the manual briefly reviews the production of bio fuel and bio heat, part 2 considers the organizational aspects of the project, and part 3 is a tool box containing laws and regulations, templates for contracts/agreements etc

CONCEPTUAL DESIGN ASSESSMENT FOR THE CO-FIRING OF BIO-REFINERY SUPPLIED LIGNIN PROJECT

International Nuclear Information System (INIS)

Ted Berglund; Jeffrey T. Ranney; Carol L. Babb; Jacqueline G. Broder

2002-01-01

The major aspects of this project are proceeding toward completion. Prior to this quarter, design criteria, tentative site selection, facility layout, and preliminary facility cost estimates were completed and issued. Processing of bio-solids was completed, providing material for the pilot operations. Pilot facility hydrolysis production has been completed to produce lignin for co-fire testing and the lignin fuel was washed and dewatered. Both the lignin and bio-solids fuel materials for co-fire testing were sent to the co-fire facility (EERC) for evaluation and co-firing. EERC has received coal typical of the fuel to the TVA-Colbert boilers. This material was used at EERC as baseline material and for mixing with the bio-fuel for combustion testing. All the combustion and fuel handling tests at EERC have been completed. During fuel preparation EERC reported no difficulties in fuel blending and handling. Preliminary co-fire test results indicate that the blending of lignin and bio-solids with the Colbert coal blend generally reduces NO(sub x) emissions, increases the reactivity of the coal, and increases the ash deposition rate on superheater surfaces. Deposits produced from the fuel blends, however, are more friable and hence easier to remove from tube surfaces relative to those produced from the baseline Colbert coal blend. The final co-fire testing report is being prepared at EERC and will be completed by the end of the second quarter of 2002. The TVA-Colbert facility has neared completion of the task to evaluate co-location of the Masada facility on the operation of the power generation facility. The TVA-Colbert fossil plant is fully capable of providing a reliable steam supply. The preferred steam supply connection points and steam pipeline routing have been identified. The environmental review of the pipeline routing has been completed and no major impacts have been identified. Detailed assessment of steam export impacts on the Colbert boiler system have been

COFFEE - Coherent Optical System Field Trial for Spectral Efficiency Enhancement

DEFF Research Database (Denmark)

Imran, Muhammad; Fresi, Francesco; Rommel, Simon

2016-01-01

The scope, aims, and contributions of the COFFEE project for spectral efficiency enhancement and market exposure are presented.......The scope, aims, and contributions of the COFFEE project for spectral efficiency enhancement and market exposure are presented....

BioMoby extensions to the Taverna workflow management and enactment software

Directory of Open Access Journals (Sweden)

Senger Martin

2006-11-01

Full Text Available Abstract Background As biology becomes an increasingly computational science, it is critical that we develop software tools that support not only bioinformaticians, but also bench biologists in their exploration of the vast and complex data-sets that continue to build from international genomic, proteomic, and systems-biology projects. The BioMoby interoperability system was created with the goal of facilitating the movement of data from one Web-based resource to another to fulfill the requirements of non-expert bioinformaticians. In parallel with the development of BioMoby, the European myGrid project was designing Taverna, a bioinformatics workflow design and enactment tool. Here we describe the marriage of these two projects in the form of a Taverna plug-in that provides access to many of BioMoby's features through the Taverna interface. Results The exposed BioMoby functionality aids in the design of "sensible" BioMoby workflows, aids in pipelining BioMoby and non-BioMoby-based resources, and ensures that end-users need only a minimal understanding of both BioMoby, and the Taverna interface itself. Users are guided through the construction of syntactically and semantically correct workflows through plug-in calls to the Moby Central registry. Moby Central provides a menu of only those BioMoby services capable of operating on the data-type(s that exist at any given position in the workflow. Moreover, the plug-in automatically and correctly connects a selected service into the workflow such that users are not required to understand the nature of the inputs or outputs for any service, leaving them to focus on the biological meaning of the workflow they are constructing, rather than the technical details of how the services will interoperate. Conclusion With the availability of the BioMoby plug-in to Taverna, we believe that BioMoby-based Web Services are now significantly more useful and accessible to bench scientists than are more traditional

A dual amplification strategy for DNA detection combining bio-barcode assay and metal-enhanced fluorescence modality.

Science.gov (United States)

Zhou, Zhenpeng; Li, Tian; Huang, Hongduan; Chen, Yang; Liu, Feng; Huang, Chengzhi; Li, Na

2014-11-11

Silver-enhanced fluorescence was coupled with a bio-barcode assay to facilitate a dual amplification assay to demonstrate a non-enzymatic approach for simple and sensitive detection of DNA. In the assay design, magnetic nanoparticles seeded with silver nanoparticles were modified with the capture DNA, and silver nanoparticles were modified with the binding of ssDNA and the fluorescently labeled barcode dsDNA. Upon introduction of the target DNA, a sandwich structure was formed because of the hybridization reaction. By simple magnetic separation, silver-enhanced fluorescence of barcode DNAs could be readily measured without the need of a further step to liberate barcode DNAs from silver nanoparticles, endowing the method with simplicity and high sensitivity with a detection limit of 1 pM.

Bio energy: Bio fuel - Properties and Production

International Nuclear Information System (INIS)

Wilhelmsen, Gunnar; Martinsen, Arnold Kyrre; Sandberg, Eiliv; Fladset, Per Olav; Kjerschow, Einar; Teslo, Einar

2001-01-01

This is Chapter 3 of the book ''Bio energy - Environment, technique and market''. Its main sections are: (1) Definitions and properties, (2) Bio fuel from the forest, (3) Processed bio fuel - briquettes, pellets and powder, (4) Bio fuel from agriculture, (5) Bio fuel from agro industry, (6) Bio fuel from lakes and sea, (7) Bio fuel from aquaculture, (8) Bio fuel from wastes and (9) Hydrogen as a fuel. The exposition largely describes the conditions in Norway. The chapter on energy from the forest includes products from the timber and sawmill industry, the pulp and paper industry, furniture factories etc. Among agricultural sources are straw, energy forests, vegetable oil, bio ethanol, manure

Apparatus and method of optical marker projection for the three-dimensional shape measurement

Science.gov (United States)

Chen, Zhe; Qu, Xinghua; Geng, Xin; Zhang, Fumin

2015-08-01

Optical photography measurement and three-dimensional (3-D) scanning measurement have been widely used in the field of the fast dimensional and surface metrology. In the measurement process, however, retro-reflective markers are often pasted on the surface in advance for image registration and positioning the 3-D measuring instruments. For the large-scale workpiece with freeform surface, the process of pasting markers is time consuming, which reduces the measurement efficiency. Meanwhile, the measurement precision is impaired owing to the thickness of the marker. In this paper, we propose a system that projects two-dimensional (2-D) array optical markers with uniform energy on the surface of the workpiece instead of pasting retro-reflective markers, which achieves large-range and automated optical projection of the mark points. In order to conjunction with the 3-D handheld scanner belonging to our team, we develop an apparatus of optical marker projection, which is mainly composed of the high-power laser, the optical beam expander system, adjustable aperture stop and Dammann grating of dibasic spectrophotometric device. The projection apparatus can achieve the function of beams of 15 * 15 uniformly light of the two-dimensional lattice. And it's much cheaper than the existing systems.

Enhancing visible light photocatalytic and photocharge separation of (BiO)_2CO_3 plate via dramatic I"− ions doping effect

International Nuclear Information System (INIS)

Liang, Lei; Cao, Jing; Lin, Haili; Guo, Xiaomin; Zhang, Meiyu; Chen, Shifu

2016-01-01

Highlights: • Novel I-(BiO)_2CO_3 was prepared by a facile chemical precipitation method. • I"− ions impurity level located on the top of valence band of (BiO)_2CO_3. • I"− ions doping largely improved photocatalytic activity of I-(BiO)_2CO_3. • I-(BiO)_2CO_3 displayed excellent photocharge separation efficiency. - Abstract: Novel I"− ions doped (BiO)_2CO_3 (I-(BiO)_2CO_3) photocatalysts were successfully synthesized via a facile chemical precipitation method. Under visible light (λ > 400 nm), I-(BiO)_2CO_3 displayed much higher activity for rhodamine B and dichlorophenol degradation than the undoped (BiO)_2CO_3. The pseudo-first-order rate constant k_a_p_p of RhB degradation over 15.0% I-(BiO)_2CO_3 was 0.54 h"−"1, which is 11.3 times higher than that of (BiO)_2CO_3. The doped I"− ions formed an impurity level on the top of valence band of (BiO)_2CO_3 and induced much more visible light to be absorbed. The enhanced photocurrent and surface photovoltage properties were detected, which strongly ensures the efficient separation of electrons and holes in I-(BiO)_2CO_3 system under visible light. It provides a facile way to improve the photocatalytic activity of the wide-band-gap (BiO)_2CO_3 via intense doping effect of I"− ions.

Dye-Induced Enhancement of Optical Nonlinearity in Liquids and Liquid Crystals

International Nuclear Information System (INIS)

Muenster, R.; Jarasch, M.; Zhuang, X.; Shen, Y.

1997-01-01

Optical nonlinearity of liquid crystals (LC) in the isotropic phase can be enhanced by 1 order of magnitude by dissolving 0.1% of anthraquinone dye in the LC. The enhancement decreases by ∼30% when the LC transforms into the nematic phase. The same guest-host effect also exists in non-LC liquids. It can be explained by a model based on the change of guest-host interaction induced by optical excitations of the dye. copyright 1996 The American Physical Society

Optical filter finesses enhancement based on nested coupled cavities and active medium

Science.gov (United States)

Adib, George A.; Sabry, Yasser M.; Khalil, Diaa

2016-04-01

Optical filters with relatively large FSR and narrow linewidth are simultaneously needed for different applications. The ratio between the FSR and the 3-dB linewidth is given by finesse of the filter, which is solely determined by the different energy loss mechanisms limited by the technology advancement. In this work, we present a novel coupled-cavity configuration embedding an optical filter and a gain medium; allowing an overall finesse enhancement and simultaneous FSR and 3-dB linewidth engineering beyond the technological limits of the filter fabrication method. The configuration consists of two resonators. An active ring resonator comprises an optical gain medium and a passive resonator. In one configuration, the optical filter is the passive resonator itself. In a second configuration, the passive resonator is another ring resonator that embeds the optical filter. The presented configurations using a semiconductor optical amplifier are applied one time to a mechanically Fabry-Perot filter in the first presented configuration; and a second time to a fiber ring filter in the second presented configuration. The mechanical filter has an original 3-dB linewidth of 1nm and an FSR that is larger than 100nm while the enhanced linewidth is about 0.3nm. The fiber ring filter length is 4 m and directional coupler ratios of 90/10corresponding to a 3-dBlinewidth of about 4MHz and an FSR of 47 MHz. The enhanced 3- dBlinewidth of the overall filter configuration is 200kHz, demonstrating finesse enhancement up to20 times the original finesse of the filter.

Enhanced Thermo-Optical Switching of Paraffin-Wax Composite Spots under Laser Heating.

Science.gov (United States)

Said, Asmaa; Salah, Abeer; Fattah, Gamal Abdel

2017-05-12

Thermo-optical switches are of particular significance in communications networks where increasingly high switching speeds are required. Phase change materials (PCMs), in particular those based on paraffin wax, provide wealth of exciting applications with unusual thermally-induced switching properties, only limited by paraffin's rather low thermal conductivity. In this paper, the use of different carbon fillers as thermal conductivity enhancers for paraffin has been investigated, and a novel structure based on spot of paraffin wax as a thermo-optic switch is presented. Thermo-optical switching parameters are enhanced with the addition of graphite and graphene, due to the extreme thermal conductivity of the carbon fillers. Differential Scanning Calorimetry (DSC) and Scanning electron microscope (SEM) are performed on paraffin wax composites, and specific heat capacities are calculated based on DSC measurements. Thermo-optical switching based on transmission is measured as a function of the host concentration under conventional electric heating and laser heating of paraffin-carbon fillers composites. Further enhancements in thermo-optical switching parameters are studied under Nd:YAG laser heating. This novel structure can be used in future networks with huge bandwidth requirements and electric noise free remote aerial laser switching applications.

Enhancing optical nonreciprocity by an atomic ensemble in two coupled cavities

Science.gov (United States)

Song, L. N.; Wang, Z. H.; Li, Yong

2018-05-01

We study the optical nonreciprocal propagation in an optical molecule of two coupled cavities with one of them interacting with a two-level atomic ensemble. The effect of increasing the number of atoms on the optical isolation ratio of the system is studied. We demonstrate that the significant nonlinearity supplied by the coupling of the atomic ensemble with the cavity leads to the realization of greatly-enhanced optical nonreciprocity compared with the case of single atom.

Jmol-Enhanced Biochemistry Research Projects

Science.gov (United States)

Saderholm, Matthew; Reynolds, Anthony

2011-01-01

We developed a protein research project for a one-semester biochemistry lecture class to enhance learning and more effectively train students to understand protein structure and function. During this semester-long process, students select a protein with known structure and then research its structure, sequence, and function. This project…

Enhanced optomechanical readout using optical coalescence

DEFF Research Database (Denmark)

Genes, Claudiu; Xuereb, André; Pupillo, Guido

2013-01-01

of a symmetric Fabry-Pérot resonator strongly modifies the cavity response function, such that two longitudinal modes with different spatial parity are brought close to frequency degeneracy and interfere in the cavity output field. In the case of a movable middle reflector we show that the interference...... in this generic “optical coalescence” phenomenon gives rise to an enhanced frequency shift of the peaks of the cavity transmission that can be exploited in optomechanics....

Use of ethanol in public urban transport: BEST (BioEthanol for Sustainable Transport) Project; Uso de etanol no transporte publico urbano: projeto BEST (Bio Ethanol para o Transporte Sustentavel)

Energy Technology Data Exchange (ETDEWEB)

Moreira, Jose Roberto; Apolinario, Sandra; Pecora, Vanessa [Universidade de Sao Paulo (CENBIO/USP), SP (Brazil). Inst. de Eletrotecnica e Energia. Centro Nacional de Referencia em Biomassa; Velazquez, Silvia [Universidade Presbiteriana Mackenzie, Sao Paulo, SP (Brazil)

2008-07-01

This paper present the BEST project - Bio Ethanol for Sustainable Transport, that aims to promote the ethanol usage, replacing diesel, in the urban public transport in Brazil and worldwide. Apart from Sao Paulo, leading city in the Americas, another eight cities located in Europe and Asia takes part in the project. One of the Brazilian project's goals is to evaluate ethanol usage as diesel fuel replacement in public transport buses by comparatively following the operational output of the experimental fleet, taking as reference an equivalent diesel bus. The utilized test vehicles will be evaluated and monitored to demonstrate ethanol energetic efficiency and, after the results the BEST project and the European Union will set a blue print for public policies to incentive ethanol usage in the urban public transport. The results will allow identifying technical and economical barriers that will eventually overlap the viability process of this technology in the Brazilian public transport. (author)

Use of ethanol in public urban transport: BEST (BioEthanol for Sustainable Transport) Project; Uso de etanol no transporte publico urbano: projeto BEST (Bio Ethanol para o Transporte Sustentavel)

Energy Technology Data Exchange (ETDEWEB)

Moreira, Jose Roberto; Apolinario, Sandra; Pecora, Vanessa [Universidade de Sao Paulo (CENBIO/USP), SP (Brazil). Inst. de Eletrotecnica e Energia. Centro Nacional de Referencia em Biomassa; Velazquez, Silvia [Universidade Presbiteriana Mackenzie, Sao Paulo, SP (Brazil)

2008-07-01

This paper present the BEST project - Bio Ethanol for Sustainable Transport, that aims to promote the ethanol usage, replacing diesel, in the urban public transport in Brazil and worldwide. Apart from Sao Paulo, leading city in the Americas, another eight cities located in Europe and Asia takes part in the project. One of the Brazilian project's goals is to evaluate ethanol usage as diesel fuel replacement in public transport buses by comparatively following the operational output of the experimental fleet, taking as reference an equivalent diesel bus. The utilized test vehicles will be evaluated and monitored to demonstrate ethanol energetic efficiency and, after the results the BEST project and the European Union will set a blue print for public policies to incentive ethanol usage in the urban public transport. The results will allow identifying technical and economical barriers that will eventually overlap the viability process of this technology in the Brazilian public transport. (author)

The origin of enhanced optical absorption in solar cells with metal nanoparticles embedded in the active layer

KAUST Repository

Lee, Jung-Yong

2010-04-29

We analyze the enhancement in optical absorption of an absorbing medium when spherical metal nanoparticles are embedded in it. Our analysis uses generalized Mie theory to calculate the absorbed optical power as a function of the distance from the metal nanoparticle. This analysis is used to evaluate the potential of enhancing optical absorption in thin-film solar cells by embedding spherical metal nanoparticles. We consider the trade-off between maximizing overall optical absorption and ensuring that a large fraction of the incident optical power is dissipated in the absorbing host medium rather than in the metal nanoparticle. We show that enhanced optical absorption results from strong scattering by the metal nanoparticle which locally enhances the optical electric fields. We also discuss the effect of a thin dielectric encapsulation of the metal nanoparticles. ©2010 Optical Society of America.

The origin of enhanced optical absorption in solar cells with metal nanoparticles embedded in the active layer

KAUST Repository

Lee, Jung-Yong; Peumans, Peter

2010-01-01

We analyze the enhancement in optical absorption of an absorbing medium when spherical metal nanoparticles are embedded in it. Our analysis uses generalized Mie theory to calculate the absorbed optical power as a function of the distance from the metal nanoparticle. This analysis is used to evaluate the potential of enhancing optical absorption in thin-film solar cells by embedding spherical metal nanoparticles. We consider the trade-off between maximizing overall optical absorption and ensuring that a large fraction of the incident optical power is dissipated in the absorbing host medium rather than in the metal nanoparticle. We show that enhanced optical absorption results from strong scattering by the metal nanoparticle which locally enhances the optical electric fields. We also discuss the effect of a thin dielectric encapsulation of the metal nanoparticles. ©2010 Optical Society of America.

Bio-technologies; Biotechnologies

Energy Technology Data Exchange (ETDEWEB)

Grawitz, X. [Systems Bio Industries, 92 - Boulogne Billancourt (France)

1997-12-31

This paper is a series of transparencies which describes the measures taken by Systems Bio-Industries company to adapt its central heating plants, turbines, engines and dryers to the new French 2910 by-law about thermal efficiency and environmental impact of heating plants. The project of development of a cogeneration system in the Angouleme site is briefly described. (J.S.)

Block matching 3D random noise filtering for absorption optical projection tomography

International Nuclear Information System (INIS)

Fumene Feruglio, P; Vinegoni, C; Weissleder, R; Gros, J; Sbarbati, A

2010-01-01

Absorption and emission optical projection tomography (OPT), alternatively referred to as optical computed tomography (optical-CT) and optical-emission computed tomography (optical-ECT), are recently developed three-dimensional imaging techniques with value for developmental biology and ex vivo gene expression studies. The techniques' principles are similar to the ones used for x-ray computed tomography and are based on the approximation of negligible light scattering in optically cleared samples. The optical clearing is achieved by a chemical procedure which aims at substituting the cellular fluids within the sample with a cell membranes' index matching solution. Once cleared the sample presents very low scattering and is then illuminated with a light collimated beam whose intensity is captured in transillumination mode by a CCD camera. Different projection images of the sample are subsequently obtained over a 360 0 full rotation, and a standard backprojection algorithm can be used in a similar fashion as for x-ray tomography in order to obtain absorption maps. Because not all biological samples present significant absorption contrast, it is not always possible to obtain projections with a good signal-to-noise ratio, a condition necessary to achieve high-quality tomographic reconstructions. Such is the case for example, for early stage's embryos. In this work we demonstrate how, through the use of a random noise removal algorithm, the image quality of the reconstructions can be considerably improved even when the noise is strongly present in the acquired projections. Specifically, we implemented a block matching 3D (BM3D) filter applying it separately on each acquired transillumination projection before performing a complete three-dimensional tomographical reconstruction. To test the efficiency of the adopted filtering scheme, a phantom and a real biological sample were processed. In both cases, the BM3D filter led to a signal-to-noise ratio increment of over 30 d

Engineering BioBrick vectors from BioBrick parts

Directory of Open Access Journals (Sweden)

Knight Thomas F

2008-04-01

Full Text Available Abstract Background The underlying goal of synthetic biology is to make the process of engineering biological systems easier. Recent work has focused on defining and developing standard biological parts. The technical standard that has gained the most traction in the synthetic biology community is the BioBrick standard for physical composition of genetic parts. Parts that conform to the BioBrick assembly standard are BioBrick standard biological parts. To date, over 2,000 BioBrick parts have been contributed to, and are available from, the Registry of Standard Biological Parts. Results Here we extended the same advantages of BioBrick standard biological parts to the plasmid-based vectors that are used to provide and propagate BioBrick parts. We developed a process for engineering BioBrick vectors from BioBrick parts. We designed a new set of BioBrick parts that encode many useful vector functions. We combined the new parts to make a BioBrick base vector that facilitates BioBrick vector construction. We demonstrated the utility of the process by constructing seven new BioBrick vectors. We also successfully used the resulting vectors to assemble and propagate other BioBrick standard biological parts. Conclusion We extended the principles of part reuse and standardization to BioBrick vectors. As a result, myriad new BioBrick vectors can be readily produced from all existing and newly designed BioBrick parts. We invite the synthetic biology community to (1 use the process to make and share new BioBrick vectors; (2 expand the current collection of BioBrick vector parts; and (3 characterize and improve the available collection of BioBrick vector parts.

Asymmetry in Lotto carpets and its implication for Hockney's optical projection theory

Science.gov (United States)

Stork, David G.

2005-03-01

Recently the artist David Hockney theorized that some European painters as early as 1420 used concave mirrors and, later, converging lenses, to project real inverted images onto their canvases or other supports which they then traced and painted over. We consider a specific painting adduced as the primary evidence for this bold theory by Hockney and his collaborator, thin-film physicist Charles Falco: Lorenzo Lotto"s Husband and wife (c. 1543). These projection theorists attribute perspective anomalies in the painting to Lotto repositioning a concave mirror, specifically to overcome its limitations in depth of field. Their analysis lies thoroughly and crucially upon the assumption that the physical carpet pattern was symmetric. We point to a study of "Lotto carpets" surviving in museum collections that shows that these comparison carpets are significantly asymmetric. There seems to be no persuasive independent evidence to support the projection proponents" assumption that these carpets, hand-knotted by children in 16th-century Turkey, were symmetric. Moreover, the angular asymmetries in these surviving carpets are nearly the same as those corresponding to the anomalies in the painting, strongly suggesting that these "anomalies" are in fact due to inherent carpet asymmetries, not to changes in configuration of an optical projector. We show that a non-optical explanation can fit the visual evidence with a precision roughly equal to that of the projection theory, but without the need to invoke a complicated, undocumented optical system. Finally, had Lotto used such an optical projector, we would expect both the general historical documentary record and Lotto"s own writings to indicate as much; however no such corroboratory evidence exists. We conclude by rejecting the numerous claims of "proof" that Lotto used optical projections when executing this painting.

Promotion of hydrogen-rich gas and phenolic-rich bio-oil production from green macroalgae Cladophora glomerata via pyrolysis over its bio-char.

Science.gov (United States)

Norouzi, Omid; Jafarian, Sajedeh; Safari, Farid; Tavasoli, Ahmad; Nejati, Behnam

2016-11-01

Conversion of Cladophora glomerata (C. glomerata) as a Caspian Sea's green macroalgae into gaseous, liquid and solid products was carried out via pyrolysis at different temperatures to determine its potential for bio-oil and hydrogen-rich gas production for further industrial utilization. Non-catalytic tests were performed to determine the optimum condition for bio-oil production. The highest portion of bio-oil was retrieved at 500°C. The catalytic test was performed using the bio-char derived at 500°C as a catalyst. Effect of the addition of the algal bio-char on the composition of the bio-oil and also gaseous products was investigated. Pyrolysis derived bio-char was characterized by BET, FESEM and ICP method to show its surface area, porosity, and presence of inorganic metals on its surface, respectively. Phenols were increased from 8.5 to 20.76area% by the addition of bio-char. Moreover, the hydrogen concentration and hydrogen selectivity were also enhanced by the factors of 1.37, 1.59 respectively. Copyright © 2016 Elsevier Ltd. All rights reserved.

Tip-enhanced near-field Raman spectroscopy with a scanning tunneling microscope and side-illumination optics.

Science.gov (United States)

Yi, K J; He, X N; Zhou, Y S; Xiong, W; Lu, Y F

2008-07-01

Conventional Raman spectroscopy (RS) suffers from low spatial resolution and low detection sensitivity due to the optical diffraction limit and small interaction cross sections. It has been reported that a highly localized and significantly enhanced electromagnetic field could be generated in the proximity of a metallic tip illuminated by a laser beam. In this study, a tip-enhanced RS system was developed to both improve the resolution and enhance the detection sensitivity using the tip-enhanced near-field effects. This instrument, by combining RS with a scanning tunneling microscope and side-illumination optics, demonstrated significant enhancement on both optical sensitivity and spatial resolution using either silver (Ag)-coated tungsten (W) tips or gold (Au) tips. The sensitivity improvement was verified by observing the enhancement effects on silicon (Si) substrates. Lateral resolution was verified to be below 100 nm by mapping Ag nanostructures. By deploying the depolarization technique, an apparent enhancement of 175% on Si substrates was achieved. Furthermore, the developed instrument features fast and reliable optical alignment, versatile sample adaptability, and effective suppression of far-field signals.

BioPhotonics Workstation: a university tech transfer challenge

DEFF Research Database (Denmark)

Glückstad, Jesper; Bañas, Andrew Rafael; Tauro, Sandeep

2011-01-01

Conventional optical trapping or tweezing is often limited in the achievable trapping range because of high numerical aperture and imaging requirements. To circumvent this, we are developing a next generation BioPhotonics Workstation platform that supports extension modules through a long working...

Enabling Bio-Innovation for Poverty Alleviation in Asia | IDRC ...

International Development Research Centre (IDRC) Digital Library (Canada)

At first glance, Asia seems to have all the organizations, skills, policies and facilities essential for bio-innovation. However, these are not generally put to the service of the millions of poor who lack access to technology. This project aims to stimulate research on bio-innovation for poverty alleviation, sustainable employment ...

Topology optimization for optical projection lithography with manufacturing uncertainties

DEFF Research Database (Denmark)

Zhou, Mingdong; Lazarov, Boyan Stefanov; Sigmund, Ole

2014-01-01

to manufacturing without additional optical proximity correction (OPC). The performance of the optimized device is robust toward the considered process variations. With the proposed unified approach, the design for photolithography is achieved by considering the optimal device performance and manufacturability......This article presents a topology optimization approach for micro-and nano-devices fabricated by optical projection lithography. Incorporating the photolithography process and the manufacturing uncertainties into the topology optimization process results in a binary mask that can be sent directly...

Incidence of enhancement of the optic nerve/sheath complex in fat-suppression orbit MRI

Energy Technology Data Exchange (ETDEWEB)

Lee, Ho Kyu; Yoon, Kwon Ha; Choi, Choong Gon; Suh, Dae Chul [Asan Medical Center, University of Ulsan College of Medicine, Seoul (Korea, Republic of)

1995-04-15

To elucidate the incidence of Gd-DTPA enhancement of the optic nerve/sheath complex (ONC) in patients with various ophthalmopathies using fat-suppression MRI. Orbit MRI with fat-suppression technique (ChemSat) was performed in 58 patients with normal and various orbital lesions. The fat-suppression MR was done with and without Gd-DTPA injection in all cases. MR findings were reviewed retrospectively in a blind fashion with respect to presence or absence of contrast enhancement of the ONC. Contrast enhancement of the ONC was seen in 86% (6/7) of cavernous sinus lesions, 80% (8/10) of intraconal lesions excluding the ONC, 57% (16/28) of ONC lesions, 38% (3/8) of ocular lesions, and 2% (1/55) of normal orbits. The ONC enhancement was the most common in optic nerve/sheath tumors (10/10), and pseudotumors (6/6), cavernous sinus dural arteriovenous malformations (3/3) and cavernous sinus thrombosis (2/2), and less frequently seen in optic neuritis (3/14). Enhancement of the ONC may be seen in lesions of the cavernous sinus and orbit other than optic nerve/sheath lesion.

Bio-Optical Properties of the Inner Continental Shelf off Santos Estuarine System, Southeastern Brazil, and their Implications for Ocean Color Algorithm Performance

Directory of Open Access Journals (Sweden)

Melissa Carvalho

2014-07-01

Full Text Available Optical characterizations of coastal water masses are important tools for a better understanding of physical and biochemical processes and aid the optimization of ocean color algorithms. In this study we present three optical classes of water observed during October/2005 and March/2006 on the inner continental shelf adjacent to Santos Bay (Brazil, based on remote sensing reflectance. ANOVA indicated a crescent estuarine influence in classes 1 to 3. Class 3 presented the highest chlorophyll-a and nutrient concentration and highest light absorption coefficients. Colored dissolved organic matter (CDOM dominated the light absorption in all classes and was strongly correlated to salinity in October/2005 due to the influence of the La Plata plume. The results indicated that CDOM dynamics in the Santos inner shelf are very complex. The performance of global chlorophyll algorithms was significantly smaller for October/2005 than for March/2006. As inconsistent changes in light absorption spectra by phytoplankton were detected between samplings, the results show that future bio-optical algorithms for this region must be optimized preferentially considering CDOM optical parameters.

Metal-enhanced luminescence: Current trend and future perspectives- A review

International Nuclear Information System (INIS)

Ranjan, Rajeev; Esimbekova, Elena N.; Kirillova, Maria A.; Kratasyuk, Valentina A.

2017-01-01

Optically enhanced biosensing strategies are prerequisites for developing miniature and highly sensitive multiplexed analytical platforms. Such smart biosensing systems are highly promising for use in the fields of biomedicine and environmental monitoring. Optical signal enhancement during bioassays is attributed to the complex opto-electronic interactions of incoming photonic signals at the nanomaterial interface. Research on the use of metals other than gold and silver for such purposes tends to extend the spectral window to observe luminescence enhancement effects. Such manifold increase in luminescence may be explained by the principles of plasmon coupling, directional emission led high collection efficiency, Rayleigh scattering and related opto-electronic events. The present review begins with a mechanistic description of important phenomena associated with metal-induced luminescence enhancement, particularly focusing on the origin of metal-enhanced luminescence. This review further analyses the hybrid nanostructure capabilities responsible for maintaining unique opto-electronic properties during bio-functionalisation. Current research trends in this area, future scope of this field for designing useful bioassays and concluding remarks are then discussed. - Highlights: • Nanomaterials significantly differ from their bulk counterparts. • Strong and pronounced photophysical effects at the metal surface provide opportunities for designing novel biosensors. • Metal-enhanced luminescence increases the quantum yield of luminescent reactions. • Under optimal conditions, plasmon coupling enhances the optical effects at the nanometal surface.

Metal-enhanced luminescence: Current trend and future perspectives- A review

Energy Technology Data Exchange (ETDEWEB)

Ranjan, Rajeev [Laboratory of Bioluminescent Biotechnologies, Department of Biophysics, Institute of Fundamental Biology and Biotechnology, Siberian Federal University, 79 Svobodny Prospect, Krasnoyarsk 660041 (Russian Federation); Esimbekova, Elena N., E-mail: esimbekova@yandex.ru [Laboratory of Bioluminescent Biotechnologies, Department of Biophysics, Institute of Fundamental Biology and Biotechnology, Siberian Federal University, 79 Svobodny Prospect, Krasnoyarsk 660041 (Russian Federation); Institute of Biophysics SB RAS, Federal Research Center “Krasnoyarsk Science Center SB RAS”, Akademgorodok 50/50, Krasnoyarsk 660036 (Russian Federation); Kirillova, Maria A. [Laboratory of Bioluminescent Biotechnologies, Department of Biophysics, Institute of Fundamental Biology and Biotechnology, Siberian Federal University, 79 Svobodny Prospect, Krasnoyarsk 660041 (Russian Federation); Kratasyuk, Valentina A. [Laboratory of Bioluminescent Biotechnologies, Department of Biophysics, Institute of Fundamental Biology and Biotechnology, Siberian Federal University, 79 Svobodny Prospect, Krasnoyarsk 660041 (Russian Federation); Institute of Biophysics SB RAS, Federal Research Center “Krasnoyarsk Science Center SB RAS”, Akademgorodok 50/50, Krasnoyarsk 660036 (Russian Federation)

2017-06-08

Optically enhanced biosensing strategies are prerequisites for developing miniature and highly sensitive multiplexed analytical platforms. Such smart biosensing systems are highly promising for use in the fields of biomedicine and environmental monitoring. Optical signal enhancement during bioassays is attributed to the complex opto-electronic interactions of incoming photonic signals at the nanomaterial interface. Research on the use of metals other than gold and silver for such purposes tends to extend the spectral window to observe luminescence enhancement effects. Such manifold increase in luminescence may be explained by the principles of plasmon coupling, directional emission led high collection efficiency, Rayleigh scattering and related opto-electronic events. The present review begins with a mechanistic description of important phenomena associated with metal-induced luminescence enhancement, particularly focusing on the origin of metal-enhanced luminescence. This review further analyses the hybrid nanostructure capabilities responsible for maintaining unique opto-electronic properties during bio-functionalisation. Current research trends in this area, future scope of this field for designing useful bioassays and concluding remarks are then discussed. - Highlights: • Nanomaterials significantly differ from their bulk counterparts. • Strong and pronounced photophysical effects at the metal surface provide opportunities for designing novel biosensors. • Metal-enhanced luminescence increases the quantum yield of luminescent reactions. • Under optimal conditions, plasmon coupling enhances the optical effects at the nanometal surface.

The international validation of bio- and chemical-anlaytical screening methods for dioxins and dioxin-like PCBs: the DIFFERENCE project rounds 1 and 2

NARCIS (Netherlands)

Loco, van J.; Leeuwen, van S.P.J.; Roos, P.; Carbonnelle, S.; Boer, de J.; Goeyens, L.; Beernaert, H.

2004-01-01

The European research project DIFFERENCE is focussed on the development, optimisation and validation of screening methods for dioxin analysis, including bio-analytical and chemical techniques (CALUX, GC-LRMS/MS, GC x GC-ECD) and on the optimisation and validation of new extraction and clean-up

Liquid-infiltrated photonic crystals: enhanced light-matter interactions for lab-on-a-chip applications

DEFF Research Database (Denmark)

Mortensen, Niels Asger; Xiao, Sanshui; Pedersen, Jesper Goor

2008-01-01

Optical techniques are finding widespread use in analytical chemistry for chemical and bio-chemical analysis. During the past decade, there has been an increasing emphasis on miniaturization of chemical analysis systems and naturally this has stimulated a large effort in integrating microfluidics...... slow-light enhancement of Beer-Lambert-Bouguer absorption, photonic band-gap based refractometry, and high-Q cavity sensing....

Transistor amplifier as an electrochemical transducer with intuitive optical read-out: Improving its performance with simple electronic solutions

Czech Academy of Sciences Publication Activity Database

Lacina, K.; Žák, J.; Sopoušek, J.; Szabó, Z.; Václavek, Tomáš; Žeravík, J.; Fiala, P.; Skládal, P.

2016-01-01

Roč. 216, OCT (2016), s. 147-151 ISSN 0013-4686 R&D Projects: GA ČR GA13-09086S; GA ČR(CZ) GBP206/12/G014 Institutional support: RVO:68081715 Keywords : electrochemical transducer transistor * operational amplifier * optical read-out * ( bio )sensing Subject RIV: CB - Analytical Chemistry, Separation Impact factor: 4.798, year: 2016

Transistor amplifier as an electrochemical transducer with intuitive optical read-out: Improving its performance with simple electronic solutions

Czech Academy of Sciences Publication Activity Database

Lacina, K.; Žák, J.; Sopoušek, J.; Szabó, Z.; Václavek, Tomáš; Žeravík, J.; Fiala, P.; Skládal, P.

2016-01-01

Roč. 216, OCT (2016), s. 147-151 ISSN 0013-4686 R&D Projects: GA ČR GA13-09086S; GA ČR(CZ) GBP206/12/G014 Institutional support: RVO:68081715 Keywords : electrochemical transducer transistor * operational amplifier * optical read-out * (bio)sensing Subject RIV: CB - Analytical Chemistry, Separation Impact factor: 4.798, year: 2016

BioSig: the free and open source software library for biomedical signal processing.

Science.gov (United States)

Vidaurre, Carmen; Sander, Tilmann H; Schlögl, Alois

2011-01-01

BioSig is an open source software library for biomedical signal processing. The aim of the BioSig project is to foster research in biomedical signal processing by providing free and open source software tools for many different application areas. Some of the areas where BioSig can be employed are neuroinformatics, brain-computer interfaces, neurophysiology, psychology, cardiovascular systems, and sleep research. Moreover, the analysis of biosignals such as the electroencephalogram (EEG), electrocorticogram (ECoG), electrocardiogram (ECG), electrooculogram (EOG), electromyogram (EMG), or respiration signals is a very relevant element of the BioSig project. Specifically, BioSig provides solutions for data acquisition, artifact processing, quality control, feature extraction, classification, modeling, and data visualization, to name a few. In this paper, we highlight several methods to help students and researchers to work more efficiently with biomedical signals.

Continuous outreach activities performed by a student project team of undergraduates and their program topics in optics and photonics

Science.gov (United States)

Hasegawa, Makoto; Tokumitsu, Seika

2016-09-01

The out-of-curriculum project team "Rika-Kobo", organized by undergraduate students, has been actively engaged in a variety of continuous outreach activities in the fields of science and technology including optics and photonics. The targets of their activities cover wide ranges of generations from kids to parents and elderly people, with aiming to promote their interests in various fields of science and technologies. This is an out-of-curriculum project team with about 30 to 40 undergraduate students in several grades and majors. The total number of their activities per year tends to reach 80 to 90 in recent years. Typical activities to be performed by the project team include science classes in elementary and/or secondary schools, science classes at other educational facilities such as science museums, and experiment demonstrations at science events. Popular topics cover wide ranges from explanations and demonstrations of nature phenomena, such as rainbow colors, blue sky, sunset color, to demonstration experiments related to engineering applications, such as polarization of light, LEDs, and optical communications. Experimental topics in optics and photonics are especially popular to the audiences. Those activities are very effective to enhance interests of the audiences in learning related knowledges, irrespective of their generations. Those activities are also helpful for the student members to achieve and/or renew scientific knowledges. In addition, each of the activities provides the student members with effective and advantageous Project-Based-Learning (PBL) style experiences including manufacturing experiences, which are advantageous to cultivate their engineering skills.

Bio-Engineering High Performance Microbial Strains for MEOR

Energy Technology Data Exchange (ETDEWEB)

Xiangdong Fang; Qinghong Wang; Patrick Shuler

2007-12-30

The main objectives of this three-year research project are: (1) to employ the latest advances in genetics and bioengineering, especially Directed Protein Evolution technology, to improve the effectiveness of the microbial enhanced oil recovery (MEOR) process. (2) to improve the surfactant activity and the thermal stability of bio-surfactant systems for MEOR; and (3) to develop improved laboratory methods and tools that screen quickly candidate bio-systems for EOR. Biosurfactants have been receiving increasing attention as Enhanced Oil Recovery (EOR) agents because of their unique properties (i.e., mild production conditions, lower toxicity, and higher biodegradability) compared to their synthetic chemical counterparts. Rhamnolipid as a potent natural biosurfactant has a wide range of potential applications, including EOR and bioremediation. During the three-year of the project period, we have successfully cloned the genes involved in the rhamnolipid bio-synthesis. And by using the Transposon containing Rhamnosyltransferase gene rhlAB, we engineered the new mutant strains P. aeruginosa PEER02 and E. coli TnERAB so they can produce rhamnolipid biosurfactans. We were able to produce rhamnolipds in both P. aeroginosa PAO1-RhlA- strain and P. fluorescens ATCC15453 strain, with the increase of 55 to 175 fold in rhamnolipid production comparing with wild type bacteria strain. We have also completed the first round direct evolution studies using Error-prone PCR technique and have constructed the library of RhlAB-containing Transposon to express mutant gene in heterologous hosts. Several methods, such as colorimetric agar plate assay, colorimetric spectrophotometer assay, bioactive assay and oil spreading assay have been established to detect and screen rhamnolipid production. Our engineered P. aeruginosa PEER02 strain can produce rhamnolipids with different carbon sources as substrate. Interfacial tension analysis (IFT) showed that different rhamnolipids from different

THE CONCEPTUAL DESIGN ASSESSMENT FOR THE CO-FIRING OF BIO-REFINERY SUPPLIED LIGNIN PROJECT

International Nuclear Information System (INIS)

Ted Berglund; Jeffrey T. Ranney; Carol L. Babb; Jacqueline G. Broder

2001-01-01

The major aspects of this project are proceeding toward completion. Prior to this quarter, design criteria, tentative site selection, facility layout, and preliminary facility cost estimates were completed and issued. Processing of bio-solids was completed, providing material for the pilot operations. Pilot facility design, equipment selection, and modification were completed during the fourth quarter of 2000. Initial pilot facility shakedown was completed during the fourth quarter. After some unavoidable delays, a suitable representative supply of MSW feed material was procured. During this first quarter of 2001, shredding of the feed material and final feed conditioning were completed. Pilot facility hydrolysis production was completed to produce lignin for co-fire testing. During this quarter, TVA completed the washing and dewatering of the lignin material produced from the MSW hydrolysis. Seven drums of lignin material were washed to recover the acid and sugar from the lignin and provide an improved fuel for steam generation. Samples of both the lignin and bio-solids fuel materials for co-fire testing were sent to the co-fire facility (EERC) for evaluation. After sample evaluation, EERC approved sending the material and all of the necessary fuel for testing was shipped to EERC. EERC has requested and will receive coal typical of the fuel to the TVA-Colbert boilers. This material will be used at EERC as baseline material and for mixing with the bio-fuel for combustion testing. EERC combustion testing of the bio based fuels is scheduled to begin in August of 2001. The TVA-Colbert facility has neared completion of the task to evaluate the co-location of the Masada facility on the operation of the power generation facility. The TVA-Colbert fossil plant is fully capable of providing a reliable steam supply. The preferred steam supply connection points and steam pipeline routing have been identified. The environmental review of the pipeline routing has been completed

Resonant optical tunneling-induced enhancement of the photonic spin Hall effect

Science.gov (United States)

Jiang, Xing; Wang, Qingkai; Guo, Jun; Zhang, Jin; Chen, Shuqing; Dai, Xiaoyu; Xiang, Yuanjiang

2018-04-01

Due to the quantum analogy with optics, the resonant optical tunneling effect (ROTE) has been proposed to investigate both the fundamental physics and the practical applications of optical switches and liquid refractive index sensors. In this paper, the ROTE is used to enhance the spin Hall effect (SHE) of transmitted light. It is demonstrated that sandwiching a layer of a high-refractive-index medium (boron nitride crystal) between two low-refractive-index layers (silica) can effectively enhance the photonic SHE due to the increased refractive index gradient and an enhanced evanescent field near the interface between silica and boron nitride. A maximum transverse shift of the horizontal polarization state in the ROTE structure of about 22.25 µm has been obtained, which is at least three orders of magnitude greater than the transverse shift in the frustrated total internal reflection structure. Moreover, the SHE can be manipulated by controlling the component materials and the thickness of the ROTE structure. These findings open the possibility for future applications of photonic SHE in precision metrology and spin-based photonics.

Bio-based targeted chemical engineering education : Role and impact of bio-based energy and resourcedevelopment projects

NARCIS (Netherlands)

N.M. Márquez Luzardoa; Dr. ir. Jan Venselaar

2012-01-01

Avans University of Applied Sciences is redrafting its courses and curricula in view of sustainability. For chemical engineering in particular that implies a focus on 'green' and bio-based processes, products and energy. Avans is situated in the Southwest region of the Netherlands and specifically

Cooperative educational project for optical technicians utilizing amateur telescope making

Science.gov (United States)

Williamson, Ray

2004-01-01

In the modern optical shop, technicians are typically skilled machine operators who work on only one phase of the manufacture for each and every component. The product is designed, specified, methodized, scheduled and integrated by people off the shop floor. Even at the component level, the people inside the shop usually see only one stage of completion. In an effort to make the relevance of their work visible; to demonstrate competence to their peers; to gain appreciation for the work of others; and to give them a meaningful connection with the functions of optical systems, I created "The Telescope Project" for my former employer. I invited those interested to participate in an after-hours, partially subsidized project to build telescopes for themselves. The ground-rules included that we would all make the same design (thus practicing consensus and configuration management); that we would all work on every phase (thus learning from each other); and that we would obtain our parts by random lot at the end (thus making quality assurance a personal issue). In the process the participating technicians learned about optical theory, design, tolerancing, negotiation, scheduling, purchasing, fabrication, coating and assembly. They developed an appreciation for each other's contributions and a broader perspective on the consequences of their actions. In the end, each obtained a high-quality telescope for his or her personal use. Several developed an abiding love for astronomy. The project generated much interest from technicians who didn"t initially choose to participate. In this paper I describe the project in detail.

Bio-functionalization of silicon nitride-based piezo-resistive ...

Indian Academy of Sciences (India)

Methods of bio-functionalize silicon nitride involve process steps to ... substance in applications such as clinical analysis, environmental control and industrial pro- ... anisms could be optical (measure the deflection), or measurement of a change in ... point of care (PoC), and the instrumentation involved is quite sophisticated.

A Compilation of Global Bio-Optical in Situ Data for Ocean-Colour Satellite Applications

Science.gov (United States)

Valente, Andre; Sathyendranath, Shubha; Brotus, Vanda; Groom, Steve; Grant, Michael; Taberner, Malcolm; Antoine, David; Arnone, Robert; Balch, William M.; Barker, Kathryn;

Waveguide-Plasmon Polaritons Enhance Transverse Magneto-Optical Kerr Effect

Directory of Open Access Journals (Sweden)

Lars E. Kreilkamp

2013-11-01

Full Text Available Magneto-optical effects in ferrimagnetic or ferromagnetic materials are usually too weak for potential applications. The transverse magneto-optical Kerr effect (TMOKE in ferromagnetic films is typically on the order of 0.1%. Here, we demonstrate experimentally the enhancement of TMOKE due to the interaction of particle plasmons in gold nanowires with a photonic waveguide consisting of magneto-optical material, where hybrid waveguide-plasmon polaritons are excited. We achieve a large TMOKE that modulates the transmitted light intensity by 1.5%, accompanied by high transparency of the system. Our concept may lead to novel devices of miniaturized photonic circuits and switches, which are controllable by an external magnetic field.

The World Banks' BioCarbon Fund

Energy Technology Data Exchange (ETDEWEB)

Noble, I.

2003-03-01

In November 2002 the World Bank launched the BioCarbon Fund, a public/private initiative to provide finance to projects that store carbon in vegetation and soils ('sinks') while helping to reverse land degradation, conserve biodiversity and improve the livelihoods of local communities. The Fund will seek projects to sequester or conserve carbon in non-Annex I countries and in countries in transition. Sinks may be the only option for poor nations with small energy to benefit from the carbon finance business. The Fund will include a portion of assets based on reductions in emissions such as substitution of biofuels for fossil fuels. The author Ian Noble of the World Bank, is chairman of the BioCarbon Fund Technical Advisory Committee.

Negated bio-events: analysis and identification

Science.gov (United States)

2013-01-01

Background Negation occurs frequently in scientific literature, especially in biomedical literature. It has previously been reported that around 13% of sentences found in biomedical research articles contain negation. Historically, the main motivation for identifying negated events has been to ensure their exclusion from lists of extracted interactions. However, recently, there has been a growing interest in negative results, which has resulted in negation detection being identified as a key challenge in biomedical relation extraction. In this article, we focus on the problem of identifying negated bio-events, given gold standard event annotations. Results We have conducted a detailed analysis of three open access bio-event corpora containing negation information (i.e., GENIA Event, BioInfer and BioNLP’09 ST), and have identified the main types of negated bio-events. We have analysed the key aspects of a machine learning solution to the problem of detecting negated events, including selection of negation cues, feature engineering and the choice of learning algorithm. Combining the best solutions for each aspect of the problem, we propose a novel framework for the identification of negated bio-events. We have evaluated our system on each of the three open access corpora mentioned above. The performance of the system significantly surpasses the best results previously reported on the BioNLP’09 ST corpus, and achieves even better results on the GENIA Event and BioInfer corpora, both of which contain more varied and complex events. Conclusions Recently, in the field of biomedical text mining, the development and enhancement of event-based systems has received significant interest. The ability to identify negated events is a key performance element for these systems. We have conducted the first detailed study on the analysis and identification of negated bio-events. Our proposed framework can be integrated with state-of-the-art event extraction systems. The

Follow-groups, Enhancing Learning Potential at Project Exams

DEFF Research Database (Denmark)

Tollestrup, Christian H. T.

2016-01-01

In the Problem Based, Project Oriented Learning Program of Industrial Design Engineering at AAU students work and are examined/evaluated in groups. Following a period of a 6 years of ban on group-based exams by the government, the return of the group-based exam at Universities in 2014 has...... and the supervisor. Having the group based exam re-introduced sparked the interest for even further utilizing the exam situation for enhancing the learning outcome for each project and at the same time promote a more open atmosphere. Can the students learn even more and/or put their own project learning...... into perspective by seeing other project exams? So in order to investigate whether there was a possibility to further enhance the learning potential and understanding of the learning outcome the study board for the Architecture & Design program opened for a trial period for 2 semesters for voluntarily organizing...

Active control of electromagnetic radiation through an enhanced thermo-optic effect

Science.gov (United States)

Sheng, Chong; Liu, Hui; Zhu, Shining; Genov, Dentcho A.

2015-01-01

The control of electromagnetic radiation in transformation optical metamaterials brings the development of vast variety of optical devices. Of a particular importance is the possibility to control the propagation of light with light. In this work, we use a structured planar cavity to enhance the thermo-optic effect in a transformation optical waveguide. In the process, a control laser produces apparent inhomogeneous refractive index change inside the waveguides. The trajectory of a second probe laser beam is then continuously tuned in the experiment. The experimental results agree well with the developed theory. The reported method can provide a new approach toward development of transformation optical devices where active all-optical control of the impinging light can be achieved. PMID:25746689

Bio-oil fueled diesel power plant; Biooeljyllae toimiva dieselvoimala

Energy Technology Data Exchange (ETDEWEB)

Vuorinen, A. [Modigen Oy, Helsinki (Finland)

1995-12-31

The project mission is to develop a diesel power plant which is capable of using liquid bio-oils as the main fuel of the power plant. The applicable bio-oils are rape seed oils and pyrolysis oils. The project was started in 1994 by installing a 1.5 MW Vasa 4L32 engine in VTT Energy laboratory in Otaniemi. During 1995 the first tests with the rape seed oils were made. The tests show that the rape seed oil can be used in Vasa 32 engines without difficulties. In the second phase of the project during 1996 and 1997 pyrolysis oil made of wood will be tested. Finally a diesel power plant concept with integrated pyrolysis oil, electricity and heat production will be developed

Bio-oil fueled diesel power plant; Biooeljyllae toimiva dieselvoimala

Energy Technology Data Exchange (ETDEWEB)

Vuorinen, A [Modigen Oy, Helsinki (Finland)

1996-12-31

The project mission is to develop a diesel power plant which is capable of using liquid bio-oils as the main fuel of the power plant. The applicable bio-oils are rape seed oils and pyrolysis oils. The project was started in 1994 by installing a 1.5 MW Vasa 4L32 engine in VTT Energy laboratory in Otaniemi. During 1995 the first tests with the rape seed oils were made. The tests show that the rape seed oil can be used in Vasa 32 engines without difficulties. In the second phase of the project during 1996 and 1997 pyrolysis oil made of wood will be tested. Finally a diesel power plant concept with integrated pyrolysis oil, electricity and heat production will be developed

Bio-oil fuelled diesel power plant; Biooeljyllae toimiva dieselvoimala

Energy Technology Data Exchange (ETDEWEB)

Vuorinen, A [Modigen Oy, Helsinki (Finland)

1997-12-01

The project mission is to develop a diesel power plant which is capable of using liquid bio-oils as the main fuel of the power plant. The applicable bio-oils are rape seed oils and pyrolysis oils. The project was started in 1994 by installing a 1.5 MW Vasa 4L32 engine in VTT Energy laboratory in Otaniemi. During 1995 the first tests with the rape seed oils were made. The tests show that the rape seed oil can be used in Vasa 32 engines without difficulties. In the second phase of the project during 1996 pyrolysis oil made of wood was tested. Finally a diesel power plant concept with integrated pyrolysis oil, electricity and heat production will be developed

Multiple projection optical diffusion tomography with plane wave illumination

International Nuclear Information System (INIS)

Markel, Vadim A; Schotland, John C

2005-01-01

We describe a new data collection scheme for optical diffusion tomography in which plane wave illumination is combined with multiple projections in the slab imaging geometry. Multiple projection measurements are performed by rotating the slab around the sample. The advantage of the proposed method is that the measured data are more compatible with the dynamic range of most commonly used detectors. At the same time, multiple projections improve image quality by mutually interchanging the depth and transverse directions, and the scanned (detection) and integrated (illumination) surfaces. Inversion methods are derived for image reconstructions with extremely large data sets. Numerical simulations are performed for fixed and rotated slabs

Tunable enhanced optical absorption of graphene using plasmonic perfect absorbers

Energy Technology Data Exchange (ETDEWEB)

Cai, Yijun [Institute of Optoelectronic Technology, Department of Electronic Engineering, Xiamen University, Xiamen 361005 (China); Institute of Electromagnetics and Acoustics, Department of Electronic Science, Xiamen University, Xiamen 361005 (China); Zhu, Jinfeng, E-mail: nanoantenna@hotmail.com [Institute of Electromagnetics and Acoustics, Department of Electronic Science, Xiamen University, Xiamen 361005 (China); Liu, Qing Huo [Department of Electrical and Computer Engineering, Duke University, Durham, North Carolina 27708 (United States)

2015-01-26

Enhancement and manipulation of light absorption in graphene is a significant issue for applications of graphene-based optoelectronic devices. In order to achieve this purpose in the visible region, we demonstrate a design of a graphene optical absorber inspired by metal-dielectric-metal metamaterial for perfect absorption of electromagnetic waves. The optical absorbance ratios of single and three atomic layer graphene are enhanced up to 37.5% and 64.8%, respectively. The graphene absorber shows polarization-dependence and tolerates a wide range of incident angles. Furthermore, the peak position and bandwidth of graphene absorption spectra are tunable in a wide wavelength range through a specific structural configuration. These results imply that graphene in combination with plasmonic perfect absorbers have a promising potential for developing advanced nanophotonic devices.

Surface plasmon enhanced third-order optical nonlinearity of Ag nanocomposite film

International Nuclear Information System (INIS)

Singh, Vijender; Aghamkar, Praveen

2014-01-01

We obtain a large third-order optical nonlinearity (χ (3)  ≈ 10 −10 esu) of silver nanoparticles dispersed in polyvinyl alcohol/tetraethyl orthosilicate matrix using single beam z-scan technique at 532 nm by Q-switched Nd:YAG laser. We have shown that mechanisms responsible for third-order optical nonlinearity of Ag nanocomposite film are reverse saturable absorption (RSA) and self-defocusing in the purlieu of surface plasmon resonance (SPR). Optical band-gap and width of SPR band of Ag nanocomposite film decrease with increasing silver concentration, which leads to enhancement of local electric field and hence third-order optical nonlinearity. Optical limiting, due to RSA has also been demonstrated at 532 nm

Effect of the bio-absorbent on the microwave absorption property of the flaky CIPs/rubber absorbers

Energy Technology Data Exchange (ETDEWEB)

Cheng, Yang; Xu, Yonggang, E-mail: xuyonggang221@163.com; Cai, Jun; Yuan, Liming; Zhang, Deyuan

2015-09-01

Microwave absorbing composites filled with flaky carbonyl iron particles (CIPs) and the bio-absorbent were prepared by using a two-roll mixer and a vulcanizing machine. The electromagnetic (EM) parameters were measured by a vector network analyzer and the reflection loss (RL) was measured by the arch method in the frequency range of 1–4 GHz. The uniform dispersion of the absorbents was verified by comparing the calculated RL with the measured one. The results confirm that as the bio-absorbent was added, the permittivity was increased due to the volume content of absorbents, and the permeability was enlarged owing to the volume content of CIPs and interactions between the two absorbents. The composite filled with bio-absorbents achieved an excellent absorption property at a thickness of 1 mm (minimum RL reaches −7.8 dB), and as the RL was less than −10 dB the absorption band was widest (2.1–3.8 GHz) at a thickness of 2 mm. Therefore, the bio-absorbent is a promising additive candidate on fabricating microwave absorbing composites with a thinner thickness and wider absorption band. - Graphical abstract: Morphology of composites filled with flaky CIPs and the bio-absorbent. The enhancement of bio-absorbent on the electromagnetic absorption property of composites filled with flaky carbonyl iron particles (CIPs) is attributed to the interaction of the two absorbents. The volume content of the FCMPs with the larger shape CIPs play an important role in this effects, the composites filled with irons and bio-absorbents can achieve wider-band and thinner-thickness absorbing materials. - Highlights: • Absorbers filled with bio-absorbents and CIPs was fabricated. • Bio-absorbents enhanced the permittivity and permeability of the composites. • The absorbent interactions play a key role in the enhancement mechanism. • Bio-absorbents enhanced the composite RL in 1–4 GHz.

Enhanced linear photonic nanojet generated by core-shell optical microfibers

Science.gov (United States)

Liu, Cheng-Yang; Yen, Tzu-Ping; Chen, Chien-Wen

2017-05-01

The generation of linear photonic nanojet using core-shell optical microfiber is demonstrated numerically and experimentally in the visible light region. The power flow patterns for the core-shell optical microfiber are calculated by using the finite-difference time-domain method. The focusing properties of linear photonic nanojet are evaluated in terms of length and width along propagation and transversal directions. In experiment, the silica optical fiber is etched chemically down to 6 μm diameter and coated with metallic thin film by using glancing angle deposition. We show that the linear photonic nanojet is enhanced clearly by metallic shell due to surface plasmon polaritons. The large-area superresolution imaging can be performed by using a core-shell optical microfiber in the far-field system. The potential applications of this core-shell optical microfiber include micro-fluidics and nano-structure measurements.

A Gold Nanoparticle Bio-Optical Transponder to Dynamically Monitor Intracellular pH.

Science.gov (United States)

Carnevale, Kate J F; Riskowski, Ryan A; Strouse, Geoffrey F

2018-06-13

A pH-sensitive bio-optical transponder (pH-BOT) capable of simultaneously reporting the timing of intracellular DNA cargo release from a gold nanoparticle (AuNP) and the evolving intracellular pH (pH i) during endosomal maturation is demonstrated. The pH-BOT is designed with a triple-dye-labeled duplex DNA appended to a 6.6 nm AuNP, utilizing pH-responsive fluorescein paired with DyLight405 as a surface energy transfer (SET) coupled dye pair to ratiometrically report the pH at and after cargo release. A non-SET-coupled dye, DyLight 700, is used to provide dynamic tracking throughout the experiment. The pH-BOT beacon of the cargo uptake, release, and processing was visualized using live-cell confocal fluorescent microscopy in Chinese hamster ovary cells, and it was observed that while maturation of endosomes carrying pH-BOT is slowed significantly, the pH-BOT is distributed throughout the endolysosomal system while remaining at pH ∼6. This observed decoupling of endosomal maturation from acidification lends support to those models that propose that pH alone is not sufficient to explain endosomal maturation and may enable greater insight into our understanding of the fundamental processes of biology.

Landscape management for sustainable supplies of bio energy feedstock and enhanced soil quality

International Nuclear Information System (INIS)

Douglas, K.; Muth, D.

2013-01-01

Agriculture can simultaneously address global food, feed, fiber, and energy challenges provided our soil, water, and air resources are not compromised in doing so. Our objective is to present a landscape management concept as an approach for integrating multiple bio energy feedstock sources into current crop production systems. This is done to show how multiple, increasing global challenges can be met in a sustainable manner. We discuss how collaborative research among Usda-Agricultural Research Service (ARS), US Department of Energy (DOE) Idaho National Laboratory (INL), several university extension and research partners, and industry representatives [known as the Renewable Energy Assessment Project (Reap) team] has led to the development of computer-based decision aids for guiding sustainable bio energy feedstock production. The decision aids, known initially as the Corn Stover Tool and more recently as the Landscape Environmental Assessment Framework (Leaf) are tools designed to recognize the importance of nature s diversity and can therefore be used to guide sustainable feedstock production without having negative impacts on critical ecosystem services. Using a 57 ha farm site in central Iowa, USA, we show how producer decisions regarding corn (Zea mays L.) stover harvest within the US Corn Belt can be made in a more sustainable manner. This example also supports Reap team conclusions that stover should not be harvested if average grain yields are less than 11 Mg ha-1 unless more balanced landscape management practices are implemented. The tools also illustrate the importance of sub-field management and site-specific stover harvest strategies

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*

Directory of Open Access Journals (Sweden)

Katayama Toshiaki

2010-08-01

Full Text Available Abstract Web services have become a key technology for bioinformatics, since life science databases are globally decentralized and the exponential increase in the amount of available data demands for efficient systems without the need to transfer entire databases for every step of an analysis. However, various incompatibilities among database resources and analysis services make it difficult to connect and integrate these into interoperable workflows. To resolve this situation, we invited domain specialists from web service providers, client software developers, Open Bio* projects, the BioMoby project and researchers of emerging areas where a standard exchange data format is not well established, for an intensive collaboration entitled the BioHackathon 2008. The meeting was hosted by the Database Center for Life Science (DBCLS and Computational Biology Research Center (CBRC and was held in Tokyo from February 11th to 15th, 2008. In this report we highlight the work accomplished and the common issues arisen from this event, including the standardization of data exchange formats and services in the emerging fields of glycoinformatics, biological interaction networks, text mining, and phyloinformatics. In addition, common shared object development based on BioSQL, as well as technical challenges in large data management, asynchronous services, and security are discussed. Consequently, we improved interoperability of web services in several fields, however, further cooperation among major database centers and continued collaborative efforts between service providers and software developers are still necessary for an effective advance in bioinformatics web service technologies.

Quantum enhanced optical sensing

DEFF Research Database (Denmark)

Schäfermeier, Clemens

light source was designed and built from scratch, which achieved a noise suppression of −8 dB at an optical pump power of 40mW. The generated squeezed light was first used to demonstrate how Gaussian states and detection can beat the shot noise limit and Rayleigh criterion in phase measurements...... or demanding detection techniques. A second experiment combined squeezed light and feedback control to cool an optomechanical system. This proof-of-principle study is the first reported squeezing enhanced optomechanical cooling experiment. Despite losses of more than 50% (a resulting noise suppression of −2 d...... signals to overcome e.g. technical detection limitations. Amplified communication channels were characterised by applying the measure of mutual information I, as it offers strict bounds on the maximum achievable performance, which enabled a fair comparison between different applications scenarios...

Technology Education Professional Enhancement Project

Science.gov (United States)

Hughes, Thomas A., Jr.

1996-01-01

The two goals of this project are: the use of integrative field of aerospace technology to enhance the content and instruction delivered by math, science, and technology teachers through the development of a new publication entitled NASA Technology Today, and to develop a rationale and structure for the study of technology, which establishes the foundation for developing technology education standards and programs of the future.

Integrating microbial fuel cells with anaerobic acidification and forward osmosis membrane for enhancing bio-electricity and water recovery from low-strength wastewater.

Science.gov (United States)

Liu, Jinmeng; Wang, Xinhua; Wang, Zhiwei; Lu, Yuqin; Li, Xiufen; Ren, Yueping

2017-03-01

Microbial fuel cells (MFCs) and forward osmosis (FO) are two emerging technologies with great potential for energy-efficient wastewater treatment. In this study, anaerobic acidification and FO membrane were simultaneously integrated into an air-cathode MFC (AAFO-MFC) for enhancing bio-electricity and water recovery from low-strength wastewater. During a long-term operation of approximately 40 days, the AAFO-MFC system achieved a continuous and relatively stable power generation, and the maximum power density reached 4.38 W/m 3 . The higher bio-electricity production in the AAFO-MFC system was mainly due to the accumulation of ethanol resulted from anaerobic acidification process and the rejection of FO membrane. In addition, a proper salinity environment in the system controlled by the addition of MF membrane enhanced the electricity production. Furthermore, the AAFO-MFC system produced a high quality effluent, with the removal rates of organic matters and total phosphorus of more than 97%. However, the nitrogen removal was limited for the lower rejection of FO membrane. The combined biofouling and inorganic fouling were responsible for the lower water flux of FO membrane, and the Desulfuromonas sp. utilized the ethanol for bio-electricity production was observed in the anode. These results substantially improve the prospects for simultaneous wastewater treatment and energy recovery, and further studies are needed to optimize the system integration and operating parameters. Copyright © 2016 Elsevier Ltd. All rights reserved.

Workflow and web application for annotating NCBI BioProject transcriptome data.

Science.gov (United States)

Vera Alvarez, Roberto; Medeiros Vidal, Newton; Garzón-Martínez, Gina A; Barrero, Luz S; Landsman, David; Mariño-Ramírez, Leonardo

2017-01-01

The volume of transcriptome data is growing exponentially due to rapid improvement of experimental technologies. In response, large central resources such as those of the National Center for Biotechnology Information (NCBI) are continually adapting their computational infrastructure to accommodate this large influx of data. New and specialized databases, such as Transcriptome Shotgun Assembly Sequence Database (TSA) and Sequence Read Archive (SRA), have been created to aid the development and expansion of centralized repositories. Although the central resource databases are under continual development, they do not include automatic pipelines to increase annotation of newly deposited data. Therefore, third-party applications are required to achieve that aim. Here, we present an automatic workflow and web application for the annotation of transcriptome data. The workflow creates secondary data such as sequencing reads and BLAST alignments, which are available through the web application. They are based on freely available bioinformatics tools and scripts developed in-house. The interactive web application provides a search engine and several browser utilities. Graphical views of transcript alignments are available through SeqViewer, an embedded tool developed by NCBI for viewing biological sequence data. The web application is tightly integrated with other NCBI web applications and tools to extend the functionality of data processing and interconnectivity. We present a case study for the species Physalis peruviana with data generated from BioProject ID 67621. URL: http://www.ncbi.nlm.nih.gov/projects/physalis/. Published by Oxford University Press 2017. This work is written by US Government employees and is in the public domain in the US.

Bio-Park Pereira [Colombia]: Flora and Fauna Parkland

Directory of Open Access Journals (Sweden)

Juan Carlos de León Naranjo

2012-04-01

Full Text Available The project aims to build a parkland in the sub-urban area of Pereira, (Cerritos sector in the center of the Coffee Region of Colombia, which in addition to its tourism and recreation, contributes to the conservation of wildlife through education, research, and ecologically viable actions, economically viable and socially equitable. This project is considered a major project for the city of Pereira, as it strives to be a tourist attraction level not just regionally but nationally and internationally, which will close and friendly interaction with native flora and fauna and exotic providing healthy recreation while promoting the preservation of biodiversity. In Bio-parque be plotted four bio-regions: African Savanna, African Rainforest, Asian mangroves, South American Cliffs, and three bio-regions of Colombia: Andean Forest, Arid Caribbean and Amazon. Human cultures of each of these regions are also highlighted as examples of the wide adaptability of human beings. The main objective of the educational message in Bioparque is to show how the survival and welfare of living beings, both human and of animal and plant species depend on the knowledge and awareness of natural history, dynamics and accurate management of their different living conditions interaction.

Potential application of Chinese traditional medicine (CTM) as enhancer for tissue optical clearing

Science.gov (United States)

Chen, Wei; Jiang, Jingying; Wang, Ruikang K.; Xu, Kexin

2009-02-01

Many biocompatible hyperosmotic agents such as dimethyl sulfoxide(DMSO) have been used as enhancers for tissue optical clearing technique. However, previous investigations showed that DMSO can induce bradycardia, respiratory problems, and alterations in blood pressure. Also, DMSO could potentially alter the chemical structure, and hence the functional properties, of cell membranes. In this talk, Borneol among natural and nontoxic CTMs was introduced as new enhancer for optical clearing of porcine skin tissue since it has been widely used as new penetration promoter in the field of trandermial drug delivery system(TDDS) and been proved to be effective. In the first, the spectral characteristics of borneol was obtained and analyzed by Fourier Transformation Infrared (FTIR) spectrophotometer. And further experimental studies were performed to probe if borneol is capable of optical clearing of porcine skin tissue in vitro with near infrared spectroscopy, double integrating-spheres system and Inverse Adding-Doubling(IAD) algorithm. Spectral results show that light penetration depth into skin tissue got the increase. Meanwhile, absorption coefficient and scattering coefficient of porcine skin treated by borneol got the decrease during the permeation of Borneol. Therefore, Borneol could be potentially used as enhancer for tissue optical clearing to improve non-invasive light-based diagnostic and imaging techniques while practically optical application and clinical safety are under consideration.

BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID.

Science.gov (United States)

Kim, Sun; Islamaj Doğan, Rezarta; Chatr-Aryamontri, Andrew; Chang, Christie S; Oughtred, Rose; Rust, Jennifer; Batista-Navarro, Riza; Carter, Jacob; Ananiadou, Sophia; Matos, Sérgio; Santos, André; Campos, David; Oliveira, José Luís; Singh, Onkar; Jonnagaddala, Jitendra; Dai, Hong-Jie; Su, Emily Chia-Yu; Chang, Yung-Chun; Su, Yu-Chen; Chu, Chun-Han; Chen, Chien Chin; Hsu, Wen-Lian; Peng, Yifan; Arighi, Cecilia; Wu, Cathy H; Vijay-Shanker, K; Aydın, Ferhat; Hüsünbeyi, Zehra Melce; Özgür, Arzucan; Shin, Soo-Yong; Kwon, Dongseop; Dolinski, Kara; Tyers, Mike; Wilbur, W John; Comeau, Donald C

2016-01-01

BioC is a simple XML format for text, annotations and relations, and was developed to achieve interoperability for biomedical text processing. Following the success of BioC in BioCreative IV, the BioCreative V BioC track addressed a collaborative task to build an assistant system for BioGRID curation. In this paper, we describe the framework of the collaborative BioC task and discuss our findings based on the user survey. This track consisted of eight subtasks including gene/protein/organism named entity recognition, protein-protein/genetic interaction passage identification and annotation visualization. Using BioC as their data-sharing and communication medium, nine teams, world-wide, participated and contributed either new methods or improvements of existing tools to address different subtasks of the BioC track. Results from different teams were shared in BioC and made available to other teams as they addressed different subtasks of the track. In the end, all submitted runs were merged using a machine learning classifier to produce an optimized output. The biocurator assistant system was evaluated by four BioGRID curators in terms of practical usability. The curators' feedback was overall positive and highlighted the user-friendly design and the convenient gene/protein curation tool based on text mining.Database URL: http://www.biocreative.org/tasks/biocreative-v/track-1-bioc/. Published by Oxford University Press 2016. This work is written by US Government employees and is in the public domain in the US.

Agrice 2004. Activity report - from bio-resources to industry

International Nuclear Information System (INIS)

2005-01-01

It has been ten years since AGRICE was founded to support technological research in the field of bio-products. Even if bio-products are indeed a commercial reality, and growing in diversity, they are still marginal in the marketplace. However, the amplification of the greenhouse effect, our increasing energy dependence, the inexorable rise in oil prices, international competition and the emergence of a genuine political awareness are all factors that converge in favour of bio-products, offering a promising future. Of course, the development of bio-products is dependent on a number of conditions: biomass resources, technological advances, mobilisation of actors through dynamic research programmes (conversion of lignocellulosic biomass for alternative fuels or hydrogen, bio-technology applied to chemicals), new agro-industrial supply chains, financial instruments to bridge the cost gap with fossil fuels, a national strategy supported by a public authority dedicated to non-food uses. In the immediate future, the recent decision to open up the biofuels market via implementation of the European biofuels directive (5.75% of the market in 2010) provides an opportunity to lay the groundwork for a veritable industry of plant-based products, opening the way to the bio-refineries of the future. There is considerable potential for the development of bio-products in France. An additional 25 to 30 million tonnes-oil-equivalent (toe) of agricultural and forestry biomass could be processed into energy and industrial bio-products in France. Accordingly we can set our sights on an overall objective of substituting plant feedstocks for petroleum used in fuels and chemicals, on the order of 10% in 2020, and 20 to 30% by 2030-2050. To achieve these goals many technological advances will be necessary, with constant attention to the requirements of sustainable development. In this respect AGRICE is an invaluable tool for guiding, catalysing and supporting research efforts in these fields

Bio politics - The bio-environment - bio-culture of the Danube

International Nuclear Information System (INIS)

Vlavianos-Arvanitis, A.

1997-01-01

The bio-environment has been the single most important correlation in human history and can successfully promote international co-operational co-operation and understanding. With the construction of a network for collaboration, the 'Danube Countries' can come together in celebration of their culture and heritage. As the Danube flows from the Black Forest to the Black Sea, it carries messages of peace, hope and co-operation. Applying these messages to every endeavour can improve our quality of life and lead to a brighter future. Since its inception in 1985, the Bio politics International Organization (B.I.O.) has been labouring to raise awareness of the urgent need to instate a new system of norms and principles, compatible with sound environmental management and with the most important task of ensuring global literacy on environmental issues. Along with critically re-assessing the concept of profit, the goal is to adopt a system of bio centric values, where respect for the bio-environment will govern our every action and thought

Sustainability benefits and challenges of inter-organizational collaboration in bio-based business

NARCIS (Netherlands)

Nuhoff-Isakhanyan, Gohar; Wubben, Emiel F.M.; Omta, S.W.F.

2016-01-01

Bio-based businesses are often considered to be sustainable. However, they are also linked to sustainability challenges such as deforestation and soil erosion. Encouraged to exploit innovative solutions and enhance sustainability, organizations engaged in bio-based activities extensively explore

Bio-engineering in the Baltic Sea

DEFF Research Database (Denmark)

Zandersen, Marianne

2011-01-01

Bio-engineering in the Baltic Sea – value of water quality improvements & risk perceptions Dr. Marianne Zandersen1 Department of Environmental Science, Aarhus University Abstract The Baltic Sea is heavily eutrofied and the trend has gone from bad to worse. The hypoxic zone has increased about 4...... of the water column to the bottom waters/deepwater. The expected effects include a slowing down of the sediment release from the bottom and improvement of the possibilities for aerobic bacterial decomposition and over time for the establishment of fauna. The projects test a bio-engineered approach to speeding...

Resonance Raman Optical Activity and Surface Enhanced Resonance Raman Optical Activity analysis of Cytochrome C

DEFF Research Database (Denmark)

Johannessen, Christian; Abdali, Salim; White, Peter C.

2007-01-01

High quality Resonance Raman (RR) and resonance Raman Optical Activity (ROA) spectra of cytochrome c were obtained in order to perform full assignment of spectral features of the resonance ROA spectrum. The resonance ROA spectrum of cytochrome c revealed a distinct spectral signature pattern due...... to resonance enhanced skeletal porphyrin vibrations, more pronounced than any contribution from the protein back-bone. Combining the intrinsic resonance enhancement of cytochrome c with surface plasmon enhancement by colloidal silver particles, the Surface Enhanced Resonance Raman Scattering (SERRS) and Chiral...... Enhanced Raman Spectroscopy (ChERS) spectra of the protein were successfully obtained at very low concentration (as low as 1 µM). The assignment of spectral features was based on the information obtained from the RR and resonance ROA spectra. Excellent agreement between RR and SERRS spectra is reported...

BioBoost. Biomass based energy intermediates boosting bio-fuel production

Energy Technology Data Exchange (ETDEWEB)

Niebel, Andreas [Karlsruher Institut fuer Technologie (KIT), Karlsruhe (Germany). Institut fuer Katalyseforschung und -technologie (IKFT)

2013-10-01

To increase the share of biomass for renewable energy in Europe conversion pathways which are economic, flexible in feedstock and energy efficient are needed. The BioBoost project concentrates on dry and wet residual biomass and wastes as feedstock for de-central conversion by fast pyrolysis, catalytic pyrolysis and hydrothermal carbonization to the intermediate energy carriers oil, coal or slurry. Based on straw the energy density increases from 2 to 20-30 GJ/m{sup 3}, enabling central GW scale gasification plants for bio-fuel production. A logistic model for feedstock supply and connection of de-central with central conversion is set up and validated allowing the determination of costs, the number and location of de-central and central sites. Techno/economic and environmental assessment of the value chain supports the optimization of products and processes. The utilization of energy carriers is investigated in existing and coming applications of heat and power production and synthetic fuels and chemicals. (orig.)

Bio-SNG. Prospective renewable energy carrier in the E.ON gas grid; Bio-SNG. Zukuenftiger regenerativer Energietraeger im E.ON Gasnetz

Energy Technology Data Exchange (ETDEWEB)

Adelt, Marius; Vogel, Alexander [E.ON Ruhrgas AG, Essen (Germany)

2010-10-15

Biogas processing and injection into the natural gas pipeline system on an industrial scale has been around in Germany for some time. E.ON operates a number of biogas plants with a production capacity of 200-1700 m{sup 3}/h. More plants are under construction or planned. The German government is looking to increase the share of biogas (upgraded to natural gas quality) in the pipeline system to 6 billion m{sup 3}/a by 2020, so significantly more production capacity is needed. Biogas is produced mainly from dedicated energy crops (maize) as well as several catch crops and, depending on the processing plant, various amounts of bio residues. The biogas is upgraded to natural gas quality and fed into the pipeline system as biomethane (E.ON: bio natural gas). To achieve the ambitious production targets it will be necessary to tap the unused potential of wood for gasification and subsequent methanisation into bio-SNG. E.ON AG actively promotes the development and introduction of this technology. This article provides an overview of different aspects of bio-SNG production and use including: Utilisation paths for biomethane/bio-SNG (heat, fuel, CHP), Potential of wood for bio-SNG production, Bio-SNG production technologies, Current E.ON activities and projects. (orig.)

Supporting Collective Training & Thinking in Joint Project Optic Windmill

NARCIS (Netherlands)

Jacobs, L.R.M.A.; Wiel, R.A.N. van de; Bosch, J.; Olthoff, R.

2009-01-01

In September 2008, the Missile Defence Group of the Royal Netherlands Air Force, together with the German Air Force and the US Missile Defence Agency, organised the 10th edition of Exercise Joint Project Optic Windmill (JPOW). Over the past decade JPOW has become a world leading Integrated Air and

Enhancement and suppression of opto-acoustic parametric interactions using optical feedback

International Nuclear Information System (INIS)

Zhang Zhongyang; Zhao Chunnong; Ju, L.; Blair, D. G.

2010-01-01

A three mode opto-acoustic parametric amplifier (OAPA) is created when two orthogonal optical modes in a high finesse optical cavity are coupled via an acoustic mode of the cavity mirror. Such interactions are predicted to occur in advanced long baseline gravitational wave detectors. They can have high positive gain, which leads to strong parametric instability. Here we show that an optical feedback scheme can enhance or suppress the parametric gain of an OAPA, allowing exploration of three-mode parametric interactions, especially in cavity systems that have insufficient optical power to achieve spontaneous instability. We derive analytical equations and show that optical feedback is capable of controlling predicted instabilities in advanced gravitational wave detectors within a time scale of 13∼10 s.

Surface plasmon enhanced third-order optical nonlinearity of Ag nanocomposite film

Energy Technology Data Exchange (ETDEWEB)

Singh, Vijender [Department of Applied Science, N.C. College of Engineering, Israna, Panipat 132107, Haryana (India); Aghamkar, Praveen, E-mail: p-aghamkar@yahoo.in [Department of Physics, Chaudhary Devi Lal University, Sirsa 125055, Haryana (India)

2014-03-17

We obtain a large third-order optical nonlinearity (χ{sup (3)} ≈ 10{sup −10}esu) of silver nanoparticles dispersed in polyvinyl alcohol/tetraethyl orthosilicate matrix using single beam z-scan technique at 532 nm by Q-switched Nd:YAG laser. We have shown that mechanisms responsible for third-order optical nonlinearity of Ag nanocomposite film are reverse saturable absorption (RSA) and self-defocusing in the purlieu of surface plasmon resonance (SPR). Optical band-gap and width of SPR band of Ag nanocomposite film decrease with increasing silver concentration, which leads to enhancement of local electric field and hence third-order optical nonlinearity. Optical limiting, due to RSA has also been demonstrated at 532 nm.

Napa River Sediment TMDL Implementation and Habitat Enhancement Project

Science.gov (United States)

Information about the SFBWQP Napa River Sediment TMDL Implementation and Habitat Enhancement Project, part of an EPA competitive grant program to improve SF Bay water quality focused on restoring impaired waters and enhancing aquatic resources.

Optical rectification using geometrical field enhancement in gold nano-arrays

Science.gov (United States)

Piltan, S.; Sievenpiper, D.

2017-11-01

Conversion of photons to electrical energy has a wide variety of applications including imaging, solar energy harvesting, and IR detection. A rectenna device consists of an antenna in addition to a rectifying element to absorb the incident radiation within a certain frequency range. We designed, fabricated, and measured an optical rectifier taking advantage of asymmetrical field enhancement for forward and reverse currents due to geometrical constraints. The gold nano-structures as well as the geometrical parameters offer enhanced light-matter interaction at 382 THz. Using the Taylor expansion of the time-dependent current as a function of the external bias and oscillating optical excitation, we obtained responsivities close to quantum limit of operation. This geometrical approach can offer an efficient, broadband, and scalable solution for energy conversion and detection in the future.

Fiber-Optic Chemical Sensors and Fiber-Optic Bio-Sensors

Czech Academy of Sciences Publication Activity Database

Pospíšilová, M.; Kuncová, Gabriela; Trögl, J.

2015-01-01

Roč. 15, č. 10 (2015), s. 25208-25259 ISSN 1424-8220 Institutional support: RVO:67985858 Keywords : fiber-optic sensor * chemical sensors * enzymatic sensor Subject RIV: JB - Sensors, Measurment, Regulation Impact factor: 2.033, year: 2015

Enhanced optical coupling and Raman scattering via microscopic interface engineering

Science.gov (United States)

Thompson, Jonathan V.; Hokr, Brett H.; Kim, Wihan; Ballmann, Charles W.; Applegate, Brian E.; Jo, Javier A.; Yamilov, Alexey; Cao, Hui; Scully, Marlan O.; Yakovlev, Vladislav V.

2017-11-01

Spontaneous Raman scattering is an extremely powerful tool for the remote detection and identification of various chemical materials. However, when those materials are contained within strongly scattering or turbid media, as is the case in many biological and security related systems, the sensitivity and range of Raman signal generation and detection is severely limited. Here, we demonstrate that through microscopic engineering of the optical interface, the optical coupling of light into a turbid material can be substantially enhanced. This improved coupling facilitates the enhancement of the Raman scattering signal generated by molecules within the medium. In particular, we detect at least two-orders of magnitude more spontaneous Raman scattering from a sample when the pump laser light is focused into a microscopic hole in the surface of the sample. Because this approach enhances both the interaction time and interaction region of the laser light within the material, its use will greatly improve the range and sensitivity of many spectroscopic techniques, including Raman scattering and fluorescence emission detection, inside highly scattering environments.

Enhanced Satellite Remote Sensing of Coastal Waters Using Spatially Improved Bio-Optical Products from SNPP-VIIRS

Science.gov (United States)

2015-01-01

statistics A database of in situ reflectance, inherent optical properties (IOPs), and chlorophyll fluorescence measurements were collected from three...productivity and biogeochemical cy- cles in the sea (pp. 9–29). Plenum. Kirk, J. T. O. (1994). Light and photosynthesis in aquatic ecosystems, Cambridge

Optical design and testing: introduction.

Science.gov (United States)

Liang, Chao-Wen; Koshel, John; Sasian, Jose; Breault, Robert; Wang, Yongtian; Fang, Yi Chin

2014-10-10

Optical design and testing has numerous applications in industrial, military, consumer, and medical settings. Assembling a complete imaging or nonimage optical system may require the integration of optics, mechatronics, lighting technology, optimization, ray tracing, aberration analysis, image processing, tolerance compensation, and display rendering. This issue features original research ranging from the optical design of image and nonimage optical stimuli for human perception, optics applications, bio-optics applications, 3D display, solar energy system, opto-mechatronics to novel imaging or nonimage modalities in visible and infrared spectral imaging, modulation transfer function measurement, and innovative interferometry.

Microbial biodiversity of Tang and Pirgal mud volcanoes and evaluation of bio-emulsifier and bio-demulsifier activities of Capnophile bacteria.

Science.gov (United States)

Parsia, Yasaman; Sorooshian, Shahryar

2017-12-01

The data presented in this article is related to the Master thesis; entitled "Survey Aerobic Microbial Diversity Mud Volcanoes in Chabahar and Khash Ports in Southern Iran" by the first author of this article, year 2011, Islamic Azad University, Iran (reference number (Parsia, 2011) [1] of this article). This article shows microbial biodiversity and evaluates bio-emulsifier and bio-demulsifier abilities of capnophile isolates, in order to introduce a superior isolate for the Microbial Enhanced Oil Recovery (MEOR) process in the petrochemical industry.

Production of hydrogen from bio-ethanol in catalytic membrane reactor

International Nuclear Information System (INIS)

Gernot, E.; Aupretre, F.; Deschamps, A.; Etievant, C.; Epron, F.; Marecot, P.; Duprez, D.

2006-01-01

Production of hydrogen from renewable energy sources offers a great potential for CO 2 emission reduction, responsible for global warming. Among renewable energies, liquid biofuels are very convenient hydrogen carriers for decentralized applications such as micro-cogeneration and transports. Ethanol, produced from sugar plants and cereals, allows a reduction of more than 60% of CO 2 emissions in comparison to gasoline. BIOSTAR is an R and D project, co-funded by the French Agency for Environment and Energy Management (ADEME) which aims at developing an efficient source of hydrogen from bio-ethanol, suitable for proton exchange membrane fuel cell systems. The objectives are to obtain, through catalytic process at medium temperature range, an efficient conversion of bio-ethanol into pure hydrogen directly usable for PEMFC. CETH has developed a catalytic membrane reformer (CMR), based on a patented technology, integrating a steam reforming catalyst as well as a combustion catalyst. Both catalysts have been developed and optimized for membrane reactor in partnership with the University of Poitiers. The composite metallic membrane developed by CETH allows hydrogen extraction near the hydrogen production sites, which enhances both efficiency and compactness. (authors)

Complementary bowtie aperture for localizing and enhancing optical magnetic field

Science.gov (United States)

Zhou, Nan; Kinzel, Edward C.; Xu, Xianfan

2011-08-01

Nanoscale bowtie antenna and bowtie aperture antenna have been shown to generate strongly enhanced and localized electric fields below the diffraction limit in the optical frequency range. According to Babinet's principle, their complements will be efficient for concentrating and enhancing magnetic fields. In this Letter, we discuss the enhancement of magnetic field intensity of nanoscale complementary bowtie aperture as well as complementary bowtie aperture antenna, or diabolo nanoantenna. We show that the complementary bowtie antenna resonates at a smaller wavelength and thus is more suitable for applications near visible wavelengths. The near-field magnetic intensity can be further enhanced by the addition of groove structures that scatter surface plasmon.

Optically enhanced nuclear cross polarization in acridine-doped fluorene

Energy Technology Data Exchange (ETDEWEB)

Oshiro, C.M.

1982-06-01

The objective of this work has been to create large polarizations of the dilute /sup 13/C nuclei in the solid state. The idea was to create /sup 1/H polarizations larger than Boltzmann and to use the proton enhanced nuclear induction spectroscopy cross polarization technique to then transfer this large polarization to the /sup 13/C spin system. Optical Nuclear Polarization (ONP) of acridine-doped fluorene single crystals was studied. In addition, ONP of powdered samples of the acridine-doped fluorene was studied. In general, many compounds do not crystallize easily or do not form large crystals suitable for NMR experiments. Powdered, amorphous and randomly dispersed samples are generally far more readily available than single crystals. One objective of this work has been to (first) create large /sup 1/H polarizations. Although large optical proton polarizations in single crystals have been reported previously, optically generated polarizations in powdered samples have not been reported. For these reasons, ONP studies of powdered samples of the acridine-doped fluorene were also undertaken. Using ONP in combination with the proton enhanced nuclear induction spectroscopy experiment, large /sup 13/C polarizations have been created in fluorene single crystals. These large /sup 13/C polarizations have permitted the determination of the seven incongruent chemical shielding tensors of the fluorene molecule. Part 2 of this thesis describes the proton enhanced nuclear induction spectroscopy experiment. Part 3 describes the ONP experiment. Part 4 is a description of the experimental set-up. Part 5 describes the data analysis for the determination of the chemical shielding tensors. Part 6 presents the results of the ONP experiments performed in this work and the chemical shielding tensors determined.

Optically enhanced nuclear cross polarization in acridine-doped fluorene

International Nuclear Information System (INIS)

Oshiro, C.M.

1982-06-01

The objective of this work has been to create large polarizations of the dilute 13 C nuclei in the solid state. The idea was to create 1 H polarizations larger than Boltzmann and to use the proton enhanced nuclear induction spectroscopy cross polarization technique to then transfer this large polarization to the 13 C spin system. Optical Nuclear Polarization (ONP) of acridine-doped fluorene single crystals was studied. In addition, ONP of powdered samples of the acridine-doped fluorene was studied. In general, many compounds do not crystallize easily or do not form large crystals suitable for NMR experiments. Powdered, amorphous and randomly dispersed samples are generally far more readily available than single crystals. One objective of this work has been to (first) create large 1 H polarizations. Although large optical proton polarizations in single crystals have been reported previously, optically generated polarizations in powdered samples have not been reported. For these reasons, ONP studies of powdered samples of the acridine-doped fluorene were also undertaken. Using ONP in combination with the proton enhanced nuclear induction spectroscopy experiment, large 13 C polarizations have been created in fluorene single crystals. These large 13 C polarizations have permitted the determination of the seven incongruent chemical shielding tensors of the fluorene molecule. Part 2 of this thesis describes the proton enhanced nuclear induction spectroscopy experiment. Part 3 describes the ONP experiment. Part 4 is a description of the experimental set-up. Part 5 describes the data analysis for the determination of the chemical shielding tensors. Part 6 presents the results of the ONP experiments performed in this work and the chemical shielding tensors determined

Bio Optofluidics Cell Sorter – cell-BOCS Concept and Applications

DEFF Research Database (Denmark)

Roth, Tue; Glückstad, Jesper

2012-01-01

The cell-BOCS is a novel microfluidics based cell-sorting instrument utilizing next generation optical trapping technology developed at the Technical University of Denmark. It is targeted emerging bio-medical research and diagnostics markets where it for certain applications offers a number...

Droplet microfluidics in (bio) chemical analysis

Czech Academy of Sciences Publication Activity Database

Basova, E. Y.; Foret, František

2015-01-01

Roč. 140, č. 1 (2015), s. 22-38 ISSN 0003-2654 R&D Projects: GA ČR(CZ) GBP206/12/G014 Institutional support: RVO:68081715 Keywords : droplet chemistry * bio analysis * microfluidics * protein Subject RIV: CB - Analytical Chemistry, Separation Impact factor: 4.033, year: 2015

EMBIO - The Danish Energy Agency's model for economic and environmental evaluation of bio-fuels. Main report

International Nuclear Information System (INIS)

1997-01-01

A methodological concept is established for a life-cycle based model which can be used for socio- and private economic and environmental assessment of automotive bio-fuels. The calculation method must be able to calculate socio-economic, energy, environmental, and other consequences by alternative productions and uses of bio-fuels in a way that makes it possible to compare advantages and disadvantages across alternative production technologies. Furthermore it must be possible to perform private cost-benefit calculations from the model. The model must also be able to evaluate specific bio-fuel project, and therefore the method has been developed in close interaction with analyses of two bio-fuel projects. The main emphasis in the development of the model has been put on the relation between CO 2 reduction and economics. One main result of the model analyses is therefore the calculated shadow price for the CO 2 reduction which expresses the socio-economic costs per ton saved CO 2 . The socio-economic analyses of the model do not include a monetary account of other environmental impacts than the CO 2 emission or other relevant consequences like impacts on employment, balance of payments etc. Thus the socio-economic analyses cannot be the only decision basis for assessing bio-fuel projects. The other environmental aspects are treated only briefly. The model may, however, very easily be extended to a more formalized account of these other aspects. The model may be used for specific experimental projects and for implementation of large full-scale projects. The model development has been limited to use of bio-fuels in the transportation sector. The model may, however, also be used for evaluating bio-fuels in general or other biomass-based energy use in other sectors. (LN) 113 refs

Identifying bio-physical, social and political challenges to catchment governance for sustainable freshwater fisheries in West Africa: Systems overview through scenario development in the SUSFISH project.

Science.gov (United States)

Sendzimir, Jan; Slezak, Gabriele; Melcher, Andreas

2015-04-01

Chronic and episodic water scarcity prompted construction of 1400 reservoirs in Burkina Faso since 1950, greatly expanding fisheries production. These fisheries provided an increasingly important protein source for a population that has risen 600% since 1920, but production has plateaued, and dramatic declines in adult fish size suggest these fisheries are not sustainable. The SUSFISH project joined Austrian and Burkinabe scientists to increase local capacities to manage fisheries sustainably. SUSFISH has successfully increased capacity to monitor fish populations, identify endangered species, and use specific fish and macroinvertebrate species as bio-indicators of water and habitat quality as well as anthropogenic pressures. But projects to support sustainable development in Africa have a long history of failure if only based on transfer of technology and theory based on bio-physical sciences. This paper describes the processes and products of knowledge elicitation, scenario development and systems analysis to identify barriers and bridges to long-term sustainable fisheries development that arise from bio-physical, social, political and cultural causes, and, especially, interactions between them. Lessons learned and important on-going research questions are identified for both the natural and social sciences as they apply to managing catchments at multiple scales of governance, from local to national.

Bio-based composite pedestrian bridge. Part 2: materials and production process

NARCIS (Netherlands)

Lepelaar, Mark; Hoogendoorn, Alwin; Blok, Rijk; Teuffel, Patrick; Kawaguchi, K.; Ohsaki, M.; Takeuchi, T.

2016-01-01

The Bio-based composite bridge is a 3TU project which aims to design and realize a 14m span pedestrian bridge made from fibre-reinforced polymers (FRP) and which is introduced in part 1 of this paper. Part 2 will focus on various studies about bio-based materials, which are suitable for structural

Nano technologies for Biosensor and Bio chip

International Nuclear Information System (INIS)

Kim, I.M.; Park, T.J.; Paskaleva, E.E.; Sun, F.; Seo, J.W.; Mehta, K.K.

2015-01-01

The bio sensing devices are characterized by their biological receptors, which have specificity to their corresponding analytes. These analytes are a vast and diverse group of biological molecules, DNAs, proteins (such as antibodies), fatty acids, or entire biological systems, such as pathogenic bacteria, viruses, cancerous cells, or other living organisms. A main challenge in the development of biosensor applications is the efficient recognition of a biological signal in a low signal-to-noise ratio environment, and its transduction into an electrochemical, optical, or other signals. The advent of nano material technology greatly increased the potential for achieving exquisite sensitivity of such devises, due to the innate high surface-to-volume ratio and high reactivity of the nano material. The second major challenge facing the biosensor application, that of sca lability, is addressed by multiplexing and miniaturizing of the biosensor devises into a bio chip. In recent years, biosensor and bio chip technologies have made significant progress by taking advantages of diverse kinds of nano materials that are derived from nano technology

Enhancement of nonlinear optical properties of compounds of silica ...

Indian Academy of Sciences (India)

Enhancement of nonlinear optical properties of compounds of silica glass and metallic nanoparticle. A GHARAATI1,∗ and A KAMALDAR1,2. 1Department of Physics, Payame Noor University, P.O. Box 19395-3697, Tehran, Iran. 2Department of Education 1, Shiraz, Iran. ∗. Corresponding author. E-mail: agharaati@pnu.ac.

Jatropha bio-diesel production and use

International Nuclear Information System (INIS)

Achten, W.M.J.; Aerts, R.; Muys, B.; Verchot, L.; Franken, Y.J.; Mathijs, E.; Singh, V.P.

2008-01-01

The interest in using Jatropha curcas L. (JCL) as a feedstock for the production of bio-diesel is rapidly growing. The properties of the crop and its oil have persuaded investors, policy makers and clean development mechanism (CDM) project developers to consider JCL as a substitute for fossil fuels to reduce greenhouse gas emissions. However, JCL is still a wild plant of which basic agronomic properties are not thoroughly understood and the environmental effects have not been investigated yet. Gray literature reports are very optimistic on simultaneous wasteland reclamation capability and oil yields, further fueling the Jatropha bio-diesel hype. In this paper, we give an overview of the currently available information on the different process steps of the production process of bio-diesel from JCL, being cultivation and production of seeds, extraction of the oil, conversion to and the use of the bio-diesel and the by-products. Based on this collection of data and information the best available practice, the shortcomings and the potential environmental risks and benefits are discussed for each production step. The review concludes with a call for general precaution and for science to be applied. (author)

Jatropha bio-diesel production and use

Energy Technology Data Exchange (ETDEWEB)

Achten, W.M.J.; Aerts, R.; Muys, B. [Katholieke Universiteit Leuven, Division Forest, Nature and Landscape, Celestijnenlaan 200 E Box 2411, BE-3001 Leuven (Belgium); Verchot, L. [World Agroforestry Centre (ICRAF) Head Quarters, United Nations Avenue, P.O. Box 30677, Nairobi (Kenya); Franken, Y.J. [FACT Foundation, Horsten 1, 5612 AX Eindhoven (Netherlands); Mathijs, E. [Katholieke Universiteit Leuven, Division Agricultural and Food Economics, Willem de Croylaan 42 Box 2424, BE-3001 Leuven (Belgium); Singh, V.P. [World Agroforestry Centre (ICRAF) Regional Office for South Asia, CG Block, 1st Floor, National Agricultural Science Centre, Dev Prakash Shastri Marg, Pusa, New Delhi 110 012 (India)

2008-12-15

The interest in using Jatropha curcas L. (JCL) as a feedstock for the production of bio-diesel is rapidly growing. The properties of the crop and its oil have persuaded investors, policy makers and clean development mechanism (CDM) project developers to consider JCL as a substitute for fossil fuels to reduce greenhouse gas emissions. However, JCL is still a wild plant of which basic agronomic properties are not thoroughly understood and the environmental effects have not been investigated yet. Gray literature reports are very optimistic on simultaneous wasteland reclamation capability and oil yields, further fueling the Jatropha bio-diesel hype. In this paper, we give an overview of the currently available information on the different process steps of the production process of bio-diesel from JCL, being cultivation and production of seeds, extraction of the oil, conversion to and the use of the bio-diesel and the by-products. Based on this collection of data and information the best available practice, the shortcomings and the potential environmental risks and benefits are discussed for each production step. The review concludes with a call for general precaution and for science to be applied. (author)

BioOil presents: Free-flowing alternative to traditional biomass energy generation

Energy Technology Data Exchange (ETDEWEB)

McChesney, S.

2003-12-01

A new technology, called fast pyrolysis, is described. Fast pyrolysis is a process for converting biomass collected from agricultural and forest residues into an organic liquid fuel, called BioOil, that's easily transported, stored and handled. BioOil's principal virtue is that it can be used to generate carbon-neutral, cost-effective process heat and electricity; it also disposes of organic waste, and creates new jobs and industries. As an indication of interest in BioOil, two recent developments are cited as worthy of note: an award of $23 million for biomass research jointly by the USDA and the USDOE and a commitment of $30 million by the Government of Canada to support the development and demonstration of bio-based systems and technologies. (The Canadian investment is part of the $1 billion commitment toward implementation of the Climate Change Program for Canada). The fast pyrolysis process is carbon dioxide neutral, i.e. when biomass is converted into thermal energy, the carbon dioxide that is released is equal to the amount of carbon dioxide that went into growing the biomass. The process is particularly appealing to energy companies in areas with large forestry or agricultural potential. In Canada, DynaMotive Energy Systems Corporation is the most advanced in developing and commercializing environmentally friendly fuels produced from biomass; the company is also a world leader in fast pyrolysis technology. Ontario Power Generation is cooperating with DynaMotive on a project to produce BioOil from residue supplied by Erie Flooring and Wood Products. The 2.5 megawatt gas turbine that will combust the bio-oil and generate electricity will be supplied by the Magellan Aerospace Corporation. Beyond meeting the energy requirements of Erie Flooring and Wood Products, the project will also contribute about 1.5 megawatts of power to OPG's green energy portfolio in 2004. It is expected that the example of a commercial project of this scale, will serve

Bio-films and processes of bio-corrosion and bio-deterioration in oil-and gas-processing industry

Energy Technology Data Exchange (ETDEWEB)

Kholodenko, V.P.; Irkhina, I.A.; Chugunov, V.A.; Rodin, V.B.; Zhigletsova, S.K.; Yermolenko, Z.M.; Rudavin, V.V. [State Research Center for Applied Microbiology, Obolensk, Moscow region (Russian Federation)

2004-07-01

As a rule, oil- and gas-processing equipment and pipelines are attacked by different microorganisms. Their vital ability determines processes of bio-deterioration and bio-corrosion that lead often to technological accidents and severe environmental contamination. Bio-films presenting a complex association of different microorganisms and their metabolites are responsible for most of damages. In this context, to study the role bio-films may play in processes of bio-damages and in efficacy of protective measures is important. We have developed method of culturing bio-films on the surface of metal coupons by using a natural microbial association isolated from oil-processing sites. Simple and informative methods of determining microbiological parameters of bio-films required to study bio-corrosion processes are also developed. In addition, a method of electron microscopic analysis of bio-films and pitting corrosion is offered. Using these methods, we conducted model experiments to determine the dynamics of corrosion processes depending on qualitative and quantitative composition of bio-films, aeration conditions and duration of the experiment. A harmful effect of soil bacteria and micro-mycetes on different pipeline coatings was also investigated. Experiments were conducted within 3-6 months and revealed degrading action of microorganisms. This was confirmed by axial tension testing of coatings. All these approaches will be used for further development of measures to protect gas- and oil-processing equipment and pipelines against bio-corrosion and bio-damages (first of all biocides). (authors)

Chem/bio sensing with non-classical light and integrated photonics.

Science.gov (United States)

Haas, J; Schwartz, M; Rengstl, U; Jetter, M; Michler, P; Mizaikoff, B

2018-01-29

Modern quantum technology currently experiences extensive advances in applicability in communications, cryptography, computing, metrology and lithography. Harnessing this technology platform for chem/bio sensing scenarios is an appealing opportunity enabling ultra-sensitive detection schemes. This is further facilliated by the progress in fabrication, miniaturization and integration of visible and infrared quantum photonics. Especially, the combination of efficient single-photon sources together with waveguiding/sensing structures, serving as active optical transducer, as well as advanced detector materials is promising integrated quantum photonic chem/bio sensors. Besides the intrinsic molecular selectivity and non-destructive character of visible and infrared light based sensing schemes, chem/bio sensors taking advantage of non-classical light sources promise sensitivities beyond the standard quantum limit. In the present review, recent achievements towards on-chip chem/bio quantum photonic sensing platforms based on N00N states are discussed along with appropriate recognition chemistries, facilitating the detection of relevant (bio)analytes at ultra-trace concentration levels. After evaluating recent developments in this field, a perspective for a potentially promising sensor testbed is discussed for reaching integrated quantum sensing with two fiber-coupled GaAs chips together with semiconductor quantum dots serving as single-photon sources.

Mild Biomass Liquefaction Process for Economic Production of Stabilized Refinery-Ready Bio-oil

Energy Technology Data Exchange (ETDEWEB)

Gangwal, Santosh [Southern Research, Durham, NC (United States); Meng, Jiajia [Southern Research, Durham, NC (United States); McCabe, Kevin [Southern Research, Durham, NC (United States); Larson, Eric [Princeton Univ., NJ (United States). Princeton Environmental Inst.; Mastro, Kelly [Southern Research, Durham, NC (United States)

2016-04-25

Southern Research (SR) in cooperation with U.S. Department of Energy (DOE), Bioenergy Technology Office (BETO), investigated a biomass liquefaction process for economic production of stabilized refinery-ready bio-oil. The project was awarded by DOE under a Funding Opportunity Announcement (DE-FOA-0000686) for Bio-oil Stabilization and Commoditization that intended to evaluate the feasibility of using bio-oil as a potential feedstock in an existing petroleum refinery. SR investigated Topic Area 1 of the FOA at Technology Readiness Level 2-3 to develop thermochemical liquefaction technologies for producing a bio-oil feedstock from high-impact biomass that can be utilized within a petroleum refinery. Bio-oil obtained from fast pyrolysis of biomass is a green intermediate that can be further upgraded into a biofuel for blending in a petroleum refinery using a hydro-deoxygenation (HDO) route. Co-processing pyrolysis bio-oil in a petroleum refinery is an attractive approach to leverage the refinery’s existing capital. However, the petroleum industry is reluctant to accept pyrolysis bio-oil because of a lack of a standard definition for an acceptable bio-oil feedstock in existing refinery processes. Also per BETO’s multiyear program plan, fast pyrolysis-based bio-fuel is presently not cost competitive with petroleum-based transportation fuels. SR aims to develop and demonstrate a cost-effective low-severity thermal liquefaction and hydrodeoxygenation (HDO) process to convert woody biomass to stabilized bio-oils that can be directly blended with hydrotreater input streams in a petroleum refinery for production of gasoline and/or diesel range hydrocarbons. The specific project objectives are to demonstrate the processes at laboratory scale, characterize the bio-oil product and develop a plan in partnership with a refinery company to move the technology towards commercialization.

BioSmalltalk: a pure object system and library for bioinformatics.

Science.gov (United States)

Morales, Hernán F; Giovambattista, Guillermo

2013-09-15

We have developed BioSmalltalk, a new environment system for pure object-oriented bioinformatics programming. Adaptive end-user programming systems tend to become more important for discovering biological knowledge, as is demonstrated by the emergence of open-source programming toolkits for bioinformatics in the past years. Our software is intended to bridge the gap between bioscientists and rapid software prototyping while preserving the possibility of scaling to whole-system biology applications. BioSmalltalk performs better in terms of execution time and memory usage than Biopython and BioPerl for some classical situations. BioSmalltalk is cross-platform and freely available (MIT license) through the Google Project Hosting at http://code.google.com/p/biosmalltalk hernan.morales@gmail.com Supplementary data are available at Bioinformatics online.

Nanoplatforms for Detection, Remediation and Protection Against Chem-Bio Warfare

Science.gov (United States)

Denkbaş, E. B.; Bayram, C.; Kavaz, D.; Çirak, T.; Demirbilek, M.

Chemical and biological substances have been used as warfare agents by terrorists by varying degree of sophistication. It is critical that these agents be detected in real-time with high level of sensitively, specificity, and accuracy. Many different types of techniques and systems have been developed to detect these agents. But there are some limitations in these conventional techniques and systems. Limitations include the collection, handling and sampling procedures, detection limits, sample transfer, expensive equipment, personnel training, and detection materials. Due to the unique properties such as quantum effect, very high surface/volume ratio, enhanced surface reactivity, conductivity, electrical and magnetic properties of the nanomaterials offer great opportunity to develop very fast, sensitive, accurate and cost effective detection techniques and systems to detect chemical and biological (chem.-bio) warfare agents. Furthermore, surface modification of the materials is very easy and effective way to get functional or smart surfaces to be used as nano-biosensor platform. In that respect many different types of nanomaterials have been developed and used for the detection, remediation and protection, such as gold and silver nanoparticles, quantum dots, Nano chips and arrays, fluorescent polymeric and magnetic nanoparticles, fiber optic and cantilever based nanobiosensors, nanofibrillar nanostructures etc. This study summarizes preparation and characterization of nanotechnology based approaches for the detection of and remediation and protection against chem.-bio warfare agents.

Bio-effectors from waste materials as growth promoters for tomato plants, an agronomic and metabolomic study

Science.gov (United States)

Abou Chehade, Lara; Chami, Ziad Al; De Pascali, Sandra; Cavoski, Ivana; Fanizzi, Francesco Paolo

2015-04-01

In organic farming, where nutrient management is constrained and sustainability is claimed, bio-effectors pave their way. Considering selected bio-effectors, this study integrates metabolomics to agronomy in depicting induced relevant phenomena. Extracts of three agro-industrial wastes (Lemon processing residues, Fennel processing residues and Brewer's spent grain) are being investigated as sources of bio-effectors for the third trial consequently. Corresponding individual and mixture aqueous extracts are assessed for their synergistic and/or single agronomic and qualitative performances on soil-grown tomato, compared to both a control and humic acid treatments. A metabolomic profiling of tomato fruits via the Proton Nuclear Magnetic Resonance (NMR) spectroscopy, as holistic indicator of fruit quality and extract-induced responses, complements crop productivity and organoleptic/nutritional qualitative analyses. Results are expected to show mainly an enhancement of the fruit qualitative traits, and to confirm partly the previous results of better crop productivity and metabolism enhancement. Waste-derived bio-effectors could be, accordingly, demonstrated as potential candidates of plant-enhancing substances. Keywords: bio-effectors, organic farming, agro-industrial wastes, nuclear magnetic resonance (NMR), tomato.

Social Science Insights for the BioCCS Industry

Directory of Open Access Journals (Sweden)

Anne-Maree Dowd

2015-05-01

Full Text Available BioCCS is a technology gaining support as a possible emissions reduction policy option to address climate change. The process entails the capture, transport and storage of carbon dioxide produced during energy production from biomass. Globally, the most optimistic energy efficiency scenarios cannot avoid an average temperature increase of +2 °C without bioCCS. Although very much at the commencement stage, bioCCS demonstration projects can provide opportunity to garner knowledge, achieve consensus and build support around the technology’s properties. Yet many challenges face the bioCCS industry, including no guarantee biomass will always be from sustainable sources or potentially result in carbon stock losses. The operating environment also has no or limited policies, regulations and legal frameworks, and risk and safety concerns abound. Some state the key problem for bioCCS is cultural, lacking in a ‘community of support’, awareness and credibility amongst its own key stakeholders and the wider public. Therefore, the industry can benefit from the growing social science literature, drawing upon other energy and resource based industries with regard to social choice for future energy options. To this end, the following scoping review was conducted in order to ascertain gaps in existing public perception and acceptance research focusing on bioCCS.

Enhancement of nonlinear optical properties of compounds of silica

Indian Academy of Sciences (India)

The aim of this paper is to introduce a method for enhancing the nonlinear optical properties in silica glass by using metallic nanoparticles. First, the T-matrix method is developed to calculate the effective dielectric constant for the compound of silica glass and metallic nanoparticles, both of which possess nonlinear dielectric ...

Solution-dispersible Au nanocube dimers with greatly enhanced two-photon luminescence and SERS

Science.gov (United States)

Liu, Xiao-Li; Liang, Shan; Nan, Fan; Yang, Zhong-Jian; Yu, Xue-Feng; Zhou, Li; Hao, Zhong-Hua; Wang, Qu-Quan

2013-05-01

We report the synthesis of 43-nm diameter Au nanocube dimers by using Ag+ ions as competitive ligands to freeze l-cysteine-induced assembly process of the nanocubes to a desirable stage. Ascribed to the resonant interparticle coupling with an newly arising plasmon band at 710 nm and local field enhancement, the two-photon luminescence intensity of the Au nanocube dimers in solution was over 20 times stronger than that of the monomers in the wavelength range 555-620 nm. Furthermore, by coupling Raman tags onto the nanocube surface, a solution-based surface-enhanced Raman scattering (SERS) of the nanocube dimers had an enhancement factor of over 10 times compared to the isolated nanocubes. To sum up, with high stability in solution and attractive optical properties, the Au nanocube dimers have potential applications in in vivo bio-imaging and solution-based SERS.We report the synthesis of 43-nm diameter Au nanocube dimers by using Ag+ ions as competitive ligands to freeze l-cysteine-induced assembly process of the nanocubes to a desirable stage. Ascribed to the resonant interparticle coupling with an newly arising plasmon band at 710 nm and local field enhancement, the two-photon luminescence intensity of the Au nanocube dimers in solution was over 20 times stronger than that of the monomers in the wavelength range 555-620 nm. Furthermore, by coupling Raman tags onto the nanocube surface, a solution-based surface-enhanced Raman scattering (SERS) of the nanocube dimers had an enhancement factor of over 10 times compared to the isolated nanocubes. To sum up, with high stability in solution and attractive optical properties, the Au nanocube dimers have potential applications in in vivo bio-imaging and solution-based SERS. Electronic supplementary information (ESI) available. See DOI: 10.1039/c3nr01170d

Design considerations for a servo optical projection system

Science.gov (United States)

Nadalsky, Michael; Allen, Daniel; Bien, Joseph

1987-01-01

The present servooptical projection system (SOPS) furnishes 'out-the-window' scenery for a pilot-training flight simulator; attention is given to the parametric tradeoffs made in the SOPS' optical design, as well as to its mechanical packaging and the servonetwork performance of the unit as integrated into a research/training helicopter flight simulator. The final SOPS configuration is a function of scan head design, assembly modularity, image deterioration method, and focal lengths and relative apertures.

Temperature Sensitivity of an Atomic Vapor Cell-Based Dispersion-Enhanced Optical Cavity

Science.gov (United States)

Myneni, K.; Smith, D. D.; Chang, H.; Luckay, H. A.

2015-01-01

Enhancement of the response of an optical cavity to a change in optical path length, through the use of an intracavity fast-light medium, has previously been demonstrated experimentally and described theoretically for an atomic vapor cell as the intracavity resonant absorber. This phenomenon may be used to enhance both the scale factor and sensitivity of an optical cavity mode to the change in path length, e.g. in gyroscopic applications. We study the temperature sensitivity of the on-resonant scale factor enhancement, S(sub o), due to the thermal sensitivity of the lower-level atom density in an atomic vapor cell, specifically for the case of the Rb-87 D(sub 2) transition. A semi-empirical model of the temperature-dependence of the absorption profile, characterized by two parameters, a(sub o)(T) and gamma(sub a)(T) allows the temperature-dependence of the cavity response, S(sub o)(T) and dS(sub o)/dT to be predicted over a range of temperature. We compare the predictions to experiment. Our model will be useful in determining the useful range for S(sub o), given the practical constraints on temperature stability for an atomic vapor cell.

Insights into the optical and anti-bacterial properties of biogenic PbSe quantum rods

Directory of Open Access Journals (Sweden)

Jaya Mary Jacob

2016-07-01

Full Text Available The detailed optical properties of lead selenide (PbSe quantum rods biosynthesized in marine Aspergillus terreus were apprehended theoretically using ab initio calculations based on the experimental absorption spectrum. These studies indicate that the absorption coefficient of the biosynthesized PbSe quantum rods increases linearly with incident photon energies. The variation of other optical constants like extinction coefficient, refractive index and reflectance was comparable to that of the chemically synthesized counterparts. Further, the high dielectric constant and remarkable fluorescence of the biogenic PbSe quantum rods pronounce their application in opto-electronic devices in the Near Infra-Red and Ultraviolet spectral regime. The biosynthesized PbSe quantum rods were also found to possess appreciable anti-bacterial activity against various gram positive and gram negative bacterial species thus enhancing the relevance of the same for practical utility. Based on these results it can be concluded that biogenic PbSe quantum rods can be envisaged as potential candidates for bio-imaging, bio-sensing and other photo-voltaic applications.

Bio-prospecting of distillery yeasts as bio-control and bio-remediation agents.

Science.gov (United States)

Ubeda, Juan F; Maldonado, María; Briones, Ana I; Francisco, J Fernández; González, Francisco J

2014-05-01

This work constitutes a preliminary study in which the capacity of non-Saccharomyces yeasts isolated from ancient distilleries as bio-control agents against moulds and in the treatment of waste waters contaminated by heavy metals-i.e. bio-remediation-is shown. In the first control assays, antagonist effect between non-Saccharomyces yeasts, their extracts and supernatants against some moulds, analysing the plausible (not exhaustive) involved factors were qualitatively verified. In addition, two enzymatic degrading properties of cell wall plant polymers, quitinolitic and pectinolitic, were screened. Finally, their use as agents of bio-remediation of three heavy metals (cadmium, chromium and lead) was analysed semi-quantitatively. The results showed that all isolates belonging to Pichia species effectively inhibited all moulds assayed. Moreover, P. kudriavzevii is a good candidate for both bio-control and bio-remediation because it inhibited moulds and accumulated the major proportion of the three tested metals.

Haematobia irritans dataset of raw sequence reads from Illumina and Pac Bio sequencing of genomic DNA

Science.gov (United States)

The genome of the horn fly, Haematobia irritans, was sequenced using Illumina- and Pac Bio-based protocols. Following quality filtering, the raw reads have been deposited at NCBI under the BioProject and BioSample accession numbers PRJNA30967 and SAMN07830356, respectively. The Illumina reads are un...

Subsurface Bio-Immobilization of Plutonium: Experiment and Model Validation Study

International Nuclear Information System (INIS)

Reed, Donald; Rittmann, Bruce

2006-01-01

The goal of this project is to conduct a concurrent experimental and modeling study centered on the interactions of Shewanella algae BrY with plutonium and uranium species and phases. The most important objective of this research is to investigate the long-term stability of bioprecipitated immobilized actinide phases under changing redox conditions in biologically active systems. The long-term stability of bio-immobilized actinides (e.g. by bio-reduction) is a key criteria that defines the utility and effectiveness of a remediation/containment strategy for subsurface actinide contaminants. Plutonium, which is the focus of this project, is the key contaminant of concern at several DOE sites

Efficient On-chip Optical Microresonator for Optical Comb Generation: Design and Fabrication

Science.gov (United States)

Han, Kyunghun

An optical frequency comb is a series of equally spaced frequency components. It has gained much attention since Nobel physics prize was awarded John L. Hall and Theodor W. Hansch for their contribution to the optical frequency comb technique in 2005. The optical frequency comb has been extensively studied because of its precision as a tool for spectroscopy, and is now widely used in bio- and chemical sensors, optical clocks, mode-locked dark pulse generation, soliton generation, and optical communication. Recently, thanks to the developments in nanotechnology, the optical frequency comb generation is made possible at a chip-scale level with microresonators. However, because the threshold power of the optical frequency comb generation is beyond the capability of the on-chip laser source, efficient microresonator is required. Here, we demonstrate an ultra-compact and highly efficient strip-slot direct mode coupler, aiming to achieve slotted silicon microresonator cladded with nonlinear polymer Poly-DDMEBT in SOI platform. As an application of the strip-slot direct mode coupling, a double slot fiber-to-chip edge coupler is demonstrated showing 2 dB insertion loss reduction compared to the conventional single tip edge coupler. For silicon nitride platform, we investigated evanescent wave coupling of microresonator, focusing on bus waveguide geometry optimization. The optimized waveguide width offers an efficient excitation of a fundamental mode in the resonator waveguide. This investigation can benefit low threshold comb generation by enhancing the extinction ratio. We experimentally demonstrated the high Q-factor micro-ring resonator with intrinsic Q of 12.6 million as well as the single FSR comb generation with 63 mW.

The BioPhotonics Workstation: from university research to commercial prototype

DEFF Research Database (Denmark)

Glückstad, Jesper

I will outline the specifications of the compact BioPhotonics Workstation we recently have developed that utilizes high-speed spatial light modulation to generate an array of reconfigurable laser-traps making 3D real-time optical manipulation of advanced structures possible with the use of joysti...

Controlled Clustering of Gold Nanoparticles using Solid-support for Surface-enhanced Raman Spectroscopic Probes

International Nuclear Information System (INIS)

Chang, Hyejin; Chae, Jinjoo; Jeong, Hong; Kang, Homan; Lee, Yoonsik

2014-01-01

We fabricated small clusters of gold nanoparticles by using solid-supported aggregation of gold nanoparticles. The fabricated Au nanoclusters consisting mainly of dimers showed homogeneous characteristics in cluster size and SERS intensity. The SERS enhancement of 4-ABT molecules in an effective area within 2-nm gap appeared to be approximately 10. Detachment process by ultrasonication was successively carried out in order to use the nanoclusters as SERS probes. The possibility of these clusters as SERS probe was proved in terms of signal and cluster size. Single molecule-level sensitivity of surface-enhanced Raman scattering (SERS) was known approximately fifteen years ago. Ever since there have been many different applications benefiting from the ultra-high sensitivity such as single molecule detection, chemical sensing and bio-molecular probes. Especially, SERS has drawn much attention in bio-multiplexing probes owing to its unique optical characteristics claiming extremely narrow bandwidth, high sensitivity of light signals, and non-bleaching feature

Controlled Clustering of Gold Nanoparticles using Solid-support for Surface-enhanced Raman Spectroscopic Probes

Energy Technology Data Exchange (ETDEWEB)

Chang, Hyejin; Chae, Jinjoo; Jeong, Hong [Department of Chemistry Education, Seoul (Korea, Republic of); Kang, Homan; Lee, Yoonsik [Interdisciplinary Program in Nano-Science and Technology, Pohang (Korea, Republic of)

2014-03-15

We fabricated small clusters of gold nanoparticles by using solid-supported aggregation of gold nanoparticles. The fabricated Au nanoclusters consisting mainly of dimers showed homogeneous characteristics in cluster size and SERS intensity. The SERS enhancement of 4-ABT molecules in an effective area within 2-nm gap appeared to be approximately 10. Detachment process by ultrasonication was successively carried out in order to use the nanoclusters as SERS probes. The possibility of these clusters as SERS probe was proved in terms of signal and cluster size. Single molecule-level sensitivity of surface-enhanced Raman scattering (SERS) was known approximately fifteen years ago. Ever since there have been many different applications benefiting from the ultra-high sensitivity such as single molecule detection, chemical sensing and bio-molecular probes. Especially, SERS has drawn much attention in bio-multiplexing probes owing to its unique optical characteristics claiming extremely narrow bandwidth, high sensitivity of light signals, and non-bleaching feature.

Annealed silver-islands for enhanced optical absorption in organic solar cell

Energy Technology Data Exchange (ETDEWEB)

Otieno, Francis, E-mail: frankotienoo@gmail.com [Material Physics Research Institute, School of Physics, University of the Witwatersrand, Private Bag 3, Wits, 2050Johannesburg (South Africa); Materials for Energy Research Group, University of the Witwatersrand, Private Bag 3, Wits, 2050 Johannesburg (South Africa); Airo, Mildred [School of Chemistry, University of the Witwatersrand, Private Bag 3, Wits, 2050 (South Africa); Ranganathan, Kamalakannan [School of Chemistry, University of the Witwatersrand, Private Bag 3, Wits, 2050 (South Africa); DST-NRF Centre of Strong Materials and the Molecular Sciences Institute, School of Chemistry, University of the Witwatersrand, 2193 Johannesburg (South Africa); Wamwangi, Daniel [Material Physics Research Institute, School of Physics, University of the Witwatersrand, Private Bag 3, Wits, 2050Johannesburg (South Africa); Materials for Energy Research Group, University of the Witwatersrand, Private Bag 3, Wits, 2050 Johannesburg (South Africa)

2016-01-01

Silver nano-islands are explored for enhancing optical absorption and photo-conversion efficiency in organic solar cells (OSCs) based on the surface plasmon resonance effect under diverse annealing conditions. Ag nano-islands have been deposited by RF magnetron sputtering at 15 W for 10 s and subsequently annealed between 100 °C–250 °C in air and Argon ambient. The optical properties of the reconstructed Ag islands demonstrate an increase and a blue shift in the absorption bands with increasing annealing temperature. This is the localized surface plasmon effect due to the Ag islands of diverse sizes, shapes and coverages. The increase in optical absorption with temperature is attributed to changes in island shape and density as collaborated by atomic force microscopy and TEM. As a proof of concept, an organic solar cell was characterized for current–voltage (I–V) measurements under dark and under solar simulated white light. Incorporation of annealed Ag islands has yielded an efficiency increment of between 4–24%. - Highlights: • RF Sputtering can be used to produce Ag NPs at low power. • Annealing enhances size, shape reconstruction as well as inter-particle separation. • Annealing in Argon ambient is more suitable than in air. • Ag NPs annealed at 250 °C enhances device absorption and PCE by up to 24%.

Optical bio-sensors in microfluidic chips

NARCIS (Netherlands)

Pollnau, Markus; Dongre, C.; Pham Van So, P.V.S.; Bernhardi, Edward; Worhoff, Kerstin; de Ridder, R.M.; Hoekstra, Hugo

2012-01-01

Direct femtosecond laser writing is used to integrate optical waveguides that intersect the microfluidic channels in a commercial optofluidic chip. With laser excitation, fluorescently labeled DNA molecules of different sizes are separated by capillary electrophoresis with high operating speed and

Overview of the JET neutral beam enhancement project

International Nuclear Information System (INIS)

Ciric, D.; Brown, D.P.D.; Challis, C.D.; Chuilon, B.; Cox, S.J.; Crowley, B.; Day, I.E.; Edwards, D.C.; Evison, G.; Hackett, L.J.; Hotchin, S.; Hudson, Z.; Jenkins, I.; Jones, T.T.C.; King, R.; Kovari, M.; Martin, D.; Milnes, J.; Parkin, A.; Puma, A. Li

2007-01-01

The JET neutral beam (NB) heating system is being upgraded as a part of the ongoing JET Enhancement Programme. This is one of the largest upgrades of the JET machine carried out within the EFDA-JET framework. The main goals of the project are to increase the NB power delivered to JET plasma, to increase the beam pulse duration and to improve the availability and reliability of the JET NB system. The upgrade of the system is being carried out through the modification of the two existing neutral injector boxes (NIBs), each equipped with up to eight positive ion neutral injectors (PINIs). Significant changes of the JET NB system will be carried out within the next few years and will include modification of all PINIs, modification or replacement of various beamline components and corresponding instrumentation, procurement and installation of new high voltage power supply (HVPS) units and corresponding control systems and refurbishment of the 36 kV power distribution. Various physics, engineering and planning issues related to this project, as well as the current status of the project are discussed in detail. Particular attention is given to the results of a PINI prototype test, which are of crucial importance for the successful completion of the entire enhancement programme. Upon the completion of the project in 2009/2010, JET NB system should be capable of delivering more than 34 MW of deuterium beam power into the JET plasma for a duration of up to 20 s with improved reliability. This will significantly enhance overall capabilities of the JET machine in support of ITER development

Study of chemically synthesized ZnO nano particles under a bio template using radioactive ion beam

CERN Multimedia

This is a project proposal to study nano sized semiconductor ZnO system, useful in biology and medicinal purposes, using radioactive ion beam from ISOLDE. Doping of the nano particles with Cu, Cd and Ga ions (in their variable valancy states) are expected to impart changes in the electrical structure and properties in the said system under study. The morphological changes, chemical environment, micro structure, electrical and optical properties of the nano size particles of ZnO system (developed under a bio template of folic acid) after the interaction with radioactive ion beam will be studied. The provision of perturbed angular correlation (PAC) study with respect to the changes in chemical environment, where ever possible will be attempted.

Optical Microbubble Resonators with High Refractive Index Inner Coating for Bio-Sensing Applications: An Analytical Approach

Directory of Open Access Journals (Sweden)

Andrea Barucci

2016-11-01

Full Text Available The design of Whispering Gallery Mode Resonators (WGMRs used as an optical transducer for biosensing represents the first and crucial step towards the optimization of the final device performance in terms of sensitivity and Limit of Detection (LoD. Here, we propose an analytical method for the design of an optical microbubble resonator (OMBR-based biosensor. In order to enhance the OMBR sensing performance, we consider a polymeric layer of high refractive index as an inner coating for the OMBR. The effect of this layer and other optical/geometrical parameters on the mode field distribution, sensitivity and LoD of the OMBR is assessed and discussed, both for transverse electric (TE and transverse magnetic (TM polarization. The obtained results do provide physical insights for the development of OMBR-based biosensor.

Description of Ethical Bio-Technology Assessment Tools for Agriculture and Food Production. Interim Report Ethical Bio-TA Tools

NARCIS (Netherlands)

Beekman, V.

2004-01-01

The objective of 'Ethical Bio-TA Tools' project is to develop and improve tools for the ethical assessment of new technologies in agriculture and food production in general and modern biotechnologies in particular. The developed tools need to be designed for various purposes and contexts. They

Nitrogen doped germania glasses with enhanced optical and mechanical properties

DEFF Research Database (Denmark)

Storgaard-Larsen, Torben; Poulsen, Christian; Leistiko, Otto

1997-01-01

A new type of ultraviolet photosensitive germanium doped glass has been developed for use in the fabrication of optical waveguide structures. By adding ammonia to the source gases during a plasma enhanced chemical vapor deposition of these glasses, ultraviolet induced refractive index changes of ...

3-D optical profilometry at micron scale with multi-frequency fringe projection using modified fibre optic Lloyd's mirror technique

Science.gov (United States)

Inanç, Arda; Kösoğlu, Gülşen; Yüksel, Heba; Naci Inci, Mehmet

2018-06-01

A new fibre optic Lloyd's mirror method is developed for extracting 3-D height distribution of various objects at the micron scale with a resolution of 4 μm. The fibre optic assembly is elegantly integrated to an optical microscope and a CCD camera. It is demonstrated that the proposed technique is quite suitable and practical to produce an interference pattern with an adjustable frequency. By increasing the distance between the fibre and the mirror with a micrometre stage in the Lloyd's mirror assembly, the separation between the two bright fringes is lowered down to the micron scale without using any additional elements as part of the optical projection unit. A fibre optic cable, whose polymer jacket is partially stripped, and a microfluidic channel are used as test objects to extract their surface topographies. Point by point sensitivity of the method is found to be around 8 μm, changing a couple of microns depending on the fringe frequency and the measured height. A straightforward calibration procedure for the phase to height conversion is also introduced by making use of the vertical moving stage of the optical microscope. The phase analysis of the acquired image is carried out by One Dimensional Continuous Wavelet Transform for which the chosen wavelet is the Morlet wavelet and the carrier removal of the projected fringe patterns is achieved by reference subtraction. Furthermore, flexible multi-frequency property of the proposed method allows measuring discontinuous heights where there are phase ambiguities like 2π by lowering the fringe frequency and eliminating the phase ambiguity.

Aberration measurement of projection optics in lithographic tools based on two-beam interference theory

International Nuclear Information System (INIS)

Ma Mingying; Wang Xiangzhao; Wang Fan

2006-01-01

The degradation of image quality caused by aberrations of projection optics in lithographic tools is a serious problem in optical lithography. We propose what we believe to be a novel technique for measuring aberrations of projection optics based on two-beam interference theory. By utilizing the partial coherent imaging theory, a novel model that accurately characterizes the relative image displacement of a fine grating pattern to a large pattern induced by aberrations is derived. Both even and odd aberrations are extracted independently from the relative image displacements of the printed patterns by two-beam interference imaging of the zeroth and positive first orders. The simulation results show that by using this technique we can measure the aberrations present in the lithographic tool with higher accuracy

Aberration measurement of projection optics in lithographic tools based on two-beam interference theory.

Science.gov (United States)

Ma, Mingying; Wang, Xiangzhao; Wang, Fan

2006-11-10

The degradation of image quality caused by aberrations of projection optics in lithographic tools is a serious problem in optical lithography. We propose what we believe to be a novel technique for measuring aberrations of projection optics based on two-beam interference theory. By utilizing the partial coherent imaging theory, a novel model that accurately characterizes the relative image displacement of a fine grating pattern to a large pattern induced by aberrations is derived. Both even and odd aberrations are extracted independently from the relative image displacements of the printed patterns by two-beam interference imaging of the zeroth and positive first orders. The simulation results show that by using this technique we can measure the aberrations present in the lithographic tool with higher accuracy.

Performance of operational satellite bio-optical algorithms in different water types in the southeastern Arabian Sea

Directory of Open Access Journals (Sweden)

P. Minu

2016-10-01

Full Text Available The in situ remote sensing reflectance (Rrs and optically active substances (OAS measured using hyperspectral radiometer, were used for optical classification of coastal waters in the southeastern Arabian Sea. The spectral Rrs showed three distinct water types, that were associated with the variability in OAS such as chlorophyll-a (chl-a, chromophoric dissolved organic matter (CDOM and volume scattering function at 650 nm (β650. The water types were classified as Type-I, Type-II and Type-III respectively for the three Rrs spectra. The Type-I waters showed the peak Rrs in the blue band (470 nm, whereas in the case of Type-II and III waters the peak Rrs was at 560 and 570 nm respectively. The shifting of the peak Rrs at the longer wavelength was due to an increase in concentration of OAS. Further, we evaluated six bio-optical algorithms (OC3C, OC4O, OC4, OC4E, OC3M and OC4O2 used operationally to retrieve chl-a from Coastal Zone Colour Scanner (CZCS, Ocean Colour Temperature Scanner (OCTS, Sea-viewing Wide Field-of-view Sensor (SeaWiFS, MEdium Resolution Imaging Spectrometer (MERIS, Moderate Resolution Imaging Spectroradiometer (MODIS and Ocean Colour Monitor (OCM2. For chl-a concentration greater than 1.0 mg m−3, algorithms based on the reference band ratios 488/510/520 nm to 547/550/555/560/565 nm have to be considered. The assessment of algorithms showed better performance of OC3M and OC4. All the algorithms exhibited better performance in Type-I waters. However, the performance was poor in Type-II and Type-III waters which could be attributed to the significant co-variance of chl-a with CDOM.

Cross-Discipline Bio-Nanostructured Enhanced Photonic Multimode-Sensor Science

Science.gov (United States)

2017-05-23

AFRL-AFOSR-CL-TR-2017-0007 Multimode bio-nano sensor Fernando Danilo Gonzalez-Nilo UNIVERSIDAD NACIONAL ANDRES BELLO Final Report 05/23/2017...5e.  TASK NUMBER 5f.  WORK UNIT NUMBER 7. PERFORMING ORGANIZATION NAME(S) AND ADDRESS(ES) UNIVERSIDAD NACIONAL ANDRES BELLO REPUBLICA 237 SANTIAGO...Ciencias Biologicas Universidad Andres Bello Avenida Republica 239, Santiago, Chile. Objective: The proposed cross-discipline experimental study aims to

Bio-fuels

International Nuclear Information System (INIS)

2008-01-01

This report presents an overview of the technologies which are currently used or presently developed for the production of bio-fuels in Europe and more particularly in France. After a brief history of this production since the beginning of the 20. century, the authors describe the support to agriculture and the influence of the Common Agricultural Policy, outline the influence of the present context of struggle against the greenhouse effect, and present the European legislative context. Data on the bio-fuels consumption in the European Union in 2006 are discussed. An overview of the evolution of the activity related to bio-fuels in France, indicating the locations of ethanol and bio-diesel production facilities, and the evolution of bio-fuel consumption, is given. The German situation is briefly presented. Production of ethanol by fermentation, the manufacturing of ETBE, the bio-diesel production from vegetable oils are discussed. Second generation bio-fuels are then presented (cellulose enzymatic processing), together with studies on thermochemical processes and available biomass resources

A brief review of extrusion-based tissue scaffold bio-printing.

Science.gov (United States)

Ning, Liqun; Chen, Xiongbiao

2017-08-01

Extrusion-based bio-printing has great potential as a technique for manipulating biomaterials and living cells to create three-dimensional (3D) scaffolds for damaged tissue repair and function restoration. Over the last two decades, advances in both engineering techniques and life sciences have evolved extrusion-based bio-printing from a simple technique to one able to create diverse tissue scaffolds from a wide range of biomaterials and cell types. However, the complexities associated with synthesis of materials for bio-printing and manipulation of multiple materials and cells in bio-printing pose many challenges for scaffold fabrication. This paper presents an overview of extrusion-based bio-printing for scaffold fabrication, focusing on the prior-printing considerations (such as scaffold design and materials/cell synthesis), working principles, comparison to other techniques, and to-date achievements. This paper also briefly reviews the recent development of strategies with regard to hydrogel synthesis, multi-materials/cells manipulation, and process-induced cell damage in extrusion-based bio-printing. The key issue and challenges for extrusion-based bio-printing are also identified and discussed along with recommendations for future, aimed at developing novel biomaterials and bio-printing systems, creating patterned vascular networks within scaffolds, and preserving the cell viability and functions in scaffold bio-printing. The address of these challenges will significantly enhance the capability of extrusion-based bio-printing. Copyright © 2017 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Novel Chiroptical Analysis of Hemoglobin by Surface Enhanced Resonance Raman Optical Activity Spectroscopy

DEFF Research Database (Denmark)

Brazhe, Nadezda; Brazhe, Alexey; Sosnovtseva, Olga

2010-01-01

The metalloprotein hemoglobin (Hb) was studied using surface enhanced resonance Raman spectroscopy (SERRS) and surface enhanced resonance Raman optical activity (SERROA). The SERROA results are analyzed and compared with the SERRS, and the later to the resonance Raman (RRS) performed on Hb...

Simulation of Terahertz Frequency Sources. Polar-Optical Phonon Enhancement of Harmonic Generation in Schottky Diodes

National Research Council Canada - National Science Library

Gelmont, Boris

2002-01-01

... polar optical vibration frequency When a high frequency input signal is applied to a frequency multiplier device polar-optical phonons can enhance the non-linearities inherent in this device, enabling...

Heterogeneous Deformable Modeling of Bio-Tissues and Haptic Force Rendering for Bio-Object Modeling

Science.gov (United States)

Lin, Shiyong; Lee, Yuan-Shin; Narayan, Roger J.

This paper presents a novel technique for modeling soft biological tissues as well as the development of an innovative interface for bio-manufacturing and medical applications. Heterogeneous deformable models may be used to represent the actual internal structures of deformable biological objects, which possess multiple components and nonuniform material properties. Both heterogeneous deformable object modeling and accurate haptic rendering can greatly enhance the realism and fidelity of virtual reality environments. In this paper, a tri-ray node snapping algorithm is proposed to generate a volumetric heterogeneous deformable model from a set of object interface surfaces between different materials. A constrained local static integration method is presented for simulating deformation and accurate force feedback based on the material properties of a heterogeneous structure. Biological soft tissue modeling is used as an example to demonstrate the proposed techniques. By integrating the heterogeneous deformable model into a virtual environment, users can both observe different materials inside a deformable object as well as interact with it by touching the deformable object using a haptic device. The presented techniques can be used for surgical simulation, bio-product design, bio-manufacturing, and medical applications.

Pakistan's Approach Towards Cem-Bio Issues

International Nuclear Information System (INIS)

Khan, M. A.; Iqbal, J.

2007-01-01

Pakistan ratified the BWC and CWC as a non-possessive state at that time when international environment were fraught with uncertainties about Chem-Bio threat. The geographical location of Pakistan faces a serious multidimensional WMD threat which includes threat from, non-state actors and her neighbours especially after declaration of chemical weapons during process of ratification of CWC. Pakistan never pursued such chem-bio program with the aim to use it as a mean of deterrence in overall context of security policy and always encouraged any move regarding strengthening of national/international institutional efforts to counter potential misuse of chem-bio technology. Pakistan's position has consistently been positive, pragmatic and supportive. For better implementation of BWC and CWC in Pakistan, comprehensive policies have been formulated and National Authority has been established to work as National point of contact on CWC affairs. Pakistan CWC Act 2000, Pakistan Bio Safety Rules 2005 and Pakistan Export Control Act 2004 are the evidences of Pakistan's sincerity to the implementation of CWC and BWC. Pakistan has declared 15 industries involved with chemicals, out of which 06 have already been inspected by OPCW Inspectors. Pakistan has declared its national protective program and pursuing all possible measures to enhance the national capacity and potential to guard against chem-bio threats. Pakistan has proved that it is committed to the principles of disarmament, which could serve as confidence building measures and may help reducing distrust and regional tension.(author)

Bio-inspired Plasmonic Nanoarchitectured Hybrid System Towards Enhanced Far Red-to-Near Infrared Solar Photocatalysis

Science.gov (United States)

Yan, Runyu; Chen, Min; Zhou, Han; Liu, Tian; Tang, Xingwei; Zhang, Ke; Zhu, Hanxing; Ye, Jinhua; Zhang, Di; Fan, Tongxiang

2016-01-01

Solar conversion to fuels or to electricity in semiconductors using far red-to-near infrared (NIR) light, which accounts for about 40% of solar energy, is highly significant. One main challenge is the development of novel strategies for activity promotion and new basic mechanisms for NIR response. Mother Nature has evolved to smartly capture far red-to-NIR light via their intelligent systems due to unique micro/nanoarchitectures, thus motivating us for biomimetic design. Here we report the first demonstration of a new strategy, based on adopting nature’s far red-to-NIR responsive architectures for an efficient bio-inspired photocatalytic system. The system is constructed by controlled assembly of light-harvesting plasmonic nanoantennas onto a typical photocatalytic unit with butterfly wings’ 3D micro/nanoarchitectures. Experiments and finite-difference time-domain (FDTD) simulations demonstrate the structural effects on obvious far red-to-NIR photocatalysis enhancement, which originates from (1) Enhancing far red-to-NIR (700~1200 nm) harvesting, up to 25%. (2) Enhancing electric-field amplitude of localized surface plasmon (LSPs) to more than 3.5 times than that of the non-structured one, which promotes the rate of electron-hole pair formation, thus substantially reinforcing photocatalysis. This proof-of-concept study provides a new methodology for NIR photocatalysis and would potentially guide future conceptually new NIR responsive system designs.

Bio-inspired Plasmonic Nanoarchitectured Hybrid System Towards Enhanced Far Red-to-Near Infrared Solar Photocatalysis.

Science.gov (United States)

Yan, Runyu; Chen, Min; Zhou, Han; Liu, Tian; Tang, Xingwei; Zhang, Ke; Zhu, Hanxing; Ye, Jinhua; Zhang, Di; Fan, Tongxiang

2016-01-28

Solar conversion to fuels or to electricity in semiconductors using far red-to-near infrared (NIR) light, which accounts for about 40% of solar energy, is highly significant. One main challenge is the development of novel strategies for activity promotion and new basic mechanisms for NIR response. Mother Nature has evolved to smartly capture far red-to-NIR light via their intelligent systems due to unique micro/nanoarchitectures, thus motivating us for biomimetic design. Here we report the first demonstration of a new strategy, based on adopting nature's far red-to-NIR responsive architectures for an efficient bio-inspired photocatalytic system. The system is constructed by controlled assembly of light-harvesting plasmonic nanoantennas onto a typical photocatalytic unit with butterfly wings' 3D micro/nanoarchitectures. Experiments and finite-difference time-domain (FDTD) simulations demonstrate the structural effects on obvious far red-to-NIR photocatalysis enhancement, which originates from (1) Enhancing far red-to-NIR (700~1200 nm) harvesting, up to 25%. (2) Enhancing electric-field amplitude of localized surface plasmon (LSPs) to more than 3.5 times than that of the non-structured one, which promotes the rate of electron-hole pair formation, thus substantially reinforcing photocatalysis. This proof-of-concept study provides a new methodology for NIR photocatalysis and would potentially guide future conceptually new NIR responsive system designs.

Complex biological and bio-inspired systems

Energy Technology Data Exchange (ETDEWEB)

Ecke, Robert E [Los Alamos National Laboratory

2009-01-01

The understanding and characterization ofthe fundamental processes of the function of biological systems underpins many of the important challenges facing American society, from the pathology of infectious disease and the efficacy ofvaccines, to the development of materials that mimic biological functionality and deliver exceptional and novel structural and dynamic properties. These problems are fundamentally complex, involving many interacting components and poorly understood bio-chemical kinetics. We use the basic science of statistical physics, kinetic theory, cellular bio-chemistry, soft-matter physics, and information science to develop cell level models and explore the use ofbiomimetic materials. This project seeks to determine how cell level processes, such as response to mechanical stresses, chemical constituents and related gradients, and other cell signaling mechanisms, integrate and combine to create a functioning organism. The research focuses on the basic physical processes that take place at different levels ofthe biological organism: the basic role of molecular and chemical interactions are investigated, the dynamics of the DNA-molecule and its phylogenetic role are examined and the regulatory networks of complex biochemical processes are modeled. These efforts may lead to early warning algorithms ofpathogen outbreaks, new bio-sensors to detect hazards from pathomic viruses to chemical contaminants. Other potential applications include the development of efficient bio-fuel alternative-energy processes and the exploration ofnovel materials for energy usages. Finally, we use the notion of 'coarse-graining,' which is a method for averaging over less important degrees of freedom to develop computational models to predict cell function and systems-level response to disease, chemical stress, or biological pathomic agents. This project supports Energy Security, Threat Reduction, and the missions of the DOE Office of Science through its efforts to

Neutralization of Aerosolized Bio-Agents by Filled Nanocomposite Materials through Thermal and Chemical Inactivation Mechanisms

Science.gov (United States)

2016-06-01

Bio -agents by Filled Nanocomposite Materials through Thermal and Chemical Inactivation Mechanisms Distribution Statement A. Approved for public...of Cincinnati Project Title: Neutralization of Aerosolized Bio -agents by Filled Nanocomposite Materials through Thermal and Chemical Inactivation...fire ball, where they will not effectively interact with any viable bio -aerosol. 1.1.4. Conclusions Cryo-milling is necessary to achieve a

Bilateral optic neuritis in a child diagnosed with Gd-enhanced MR imaging using fat-suppression technique

Energy Technology Data Exchange (ETDEWEB)

Okamoto, K.; Ogawa, R.; Furusawa, T.; Sakai, K. [Dept. of Radiology, Niigata Univ. School of Medicine, Niigata (Japan); Ito, J.; Tokiguchi, S. [Dept. of Radiology, Niigata University School of Dentistry (Japan); Takagi, M. [Dept. of Ophthalmology, Niigata Univ. School of Medicine (Japan)

1999-05-01

A 4-year-old boy developed bilateral optic neuritis. Although precise neuro-ophthalmological evaluation was difficult, the diagnosis was made with gadolinium-enhanced MR imaging using fat-suppression technique in the initial stage of the disease. Enhancement and enlargement of the intraorbital and intracanalicular optic nerve were demonstrated bilaterally as well as protrusion of the optic nerve head. The disease responded dramatically to intravenous steroid therapy. The etiologies in children usually differ from those in adolescent and adult patients. (orig.) With 1 fig., 13 refs.

McCullough to Liberty fiber optics project

Energy Technology Data Exchange (ETDEWEB)

NONE

1997-05-01

The US Department of Energy, Western Area Power Administration (Western) proposes to replace an existing overhead static wire with a shield wire that contains optical fibers (OPGW) on transmission lines from McCullough Substation, south of Las Vegas, Nevada, to Liberty Substation near Phoenix, Arizona. The replacement will occur on the McCullough-Davis, Davis-Parker No. 2, and Parker-Liberty No. 1 230-kV transmission lines. Western is responsible for the operation and maintenance of the lines. Western prepared an Environmental Assessment (EA) entitled ``McCullough to Liberty Fiber Optics Project`` (DOE/EA-1202). The EA contains the analysis of the proposed construction, operation, and maintenance of the OPGW. Based on the analysis in the EA, Western finds that the proposed action is not a major Federal action significantly affecting the quality of the human environment, within the meaning of the National Environmental Policy Act (NEPA) of 1969. The preparation of an environmental impact statement (EIS) is not required, and therefore, Western is issuing this Findings of No Significant Impact (FONSI).

McCullough to Liberty fiber optics project

International Nuclear Information System (INIS)

1997-05-01

The US Department of Energy, Western Area Power Administration (Western) proposes to replace an existing overhead static wire with a shield wire that contains optical fibers (OPGW) on transmission lines from McCullough Substation, south of Las Vegas, Nevada, to Liberty Substation near Phoenix, Arizona. The replacement will occur on the McCullough-Davis, Davis-Parker No. 2, and Parker-Liberty No. 1 230-kV transmission lines. Western is responsible for the operation and maintenance of the lines. Western prepared an Environmental Assessment (EA) entitled ''McCullough to Liberty Fiber Optics Project'' (DOE/EA-1202). The EA contains the analysis of the proposed construction, operation, and maintenance of the OPGW. Based on the analysis in the EA, Western finds that the proposed action is not a major Federal action significantly affecting the quality of the human environment, within the meaning of the National Environmental Policy Act (NEPA) of 1969. The preparation of an environmental impact statement (EIS) is not required, and therefore, Western is issuing this Findings of No Significant Impact (FONSI)

Combining Bio-inspired Sensing with Bio-inspired Locomotion

DEFF Research Database (Denmark)

Shaikh, Danish; Hallam, John; Christensen-Dalsgaard, Jakob

In this paper we present a preliminary Braitenberg vehicle–like approach to combine bio-inspired audition with bio-inspired quadruped locomotion in simulation. Locomotion gaits of the salamander–like robot Salamandra robotica are modified by a lizard’s peripheral auditory system model that modula......In this paper we present a preliminary Braitenberg vehicle–like approach to combine bio-inspired audition with bio-inspired quadruped locomotion in simulation. Locomotion gaits of the salamander–like robot Salamandra robotica are modified by a lizard’s peripheral auditory system model...

Selective individual primary cell capture using locally bio-functionalized micropores.

Directory of Open Access Journals (Sweden)

Jie Liu

Full Text Available BACKGROUND: Solid-state micropores have been widely employed for 6 decades to recognize and size flowing unlabeled cells. However, the resistive-pulse technique presents limitations when the cells to be differentiated have overlapping dimension ranges such as B and T lymphocytes. An alternative approach would be to specifically capture cells by solid-state micropores. Here, the inner wall of 15-µm pores made in 10 µm-thick silicon membranes was covered with antibodies specific to cell surface proteins of B or T lymphocytes. The selective trapping of individual unlabeled cells in a bio-functionalized micropore makes them recognizable just using optical microscopy. METHODOLOGY/PRINCIPAL FINDINGS: We locally deposited oligodeoxynucleotide (ODN and ODN-conjugated antibody probes on the inner wall of the micropores by forming thin films of polypyrrole-ODN copolymers using contactless electro-functionalization. The trapping capabilities of the bio-functionalized micropores were validated using optical microscopy and the resistive-pulse technique by selectively capturing polystyrene microbeads coated with complementary ODN. B or T lymphocytes from a mouse splenocyte suspension were specifically immobilized on micropore walls functionalized with complementary ODN-conjugated antibodies targeting cell surface proteins. CONCLUSIONS/SIGNIFICANCE: The results showed that locally bio-functionalized micropores can isolate target cells from a suspension during their translocation throughout the pore, including among cells of similar dimensions in complex mixtures.

Selective Individual Primary Cell Capture Using Locally Bio-Functionalized Micropores

Science.gov (United States)

Liu, Jie; Bombera, Radoslaw; Leroy, Loïc; Roupioz, Yoann; Baganizi, Dieudonné R.; Marche, Patrice N.; Haguet, Vincent; Mailley, Pascal; Livache, Thierry

2013-01-01

Background Solid-state micropores have been widely employed for 6 decades to recognize and size flowing unlabeled cells. However, the resistive-pulse technique presents limitations when the cells to be differentiated have overlapping dimension ranges such as B and T lymphocytes. An alternative approach would be to specifically capture cells by solid-state micropores. Here, the inner wall of 15-µm pores made in 10 µm-thick silicon membranes was covered with antibodies specific to cell surface proteins of B or T lymphocytes. The selective trapping of individual unlabeled cells in a bio-functionalized micropore makes them recognizable just using optical microscopy. Methodology/Principal Findings We locally deposited oligodeoxynucleotide (ODN) and ODN-conjugated antibody probes on the inner wall of the micropores by forming thin films of polypyrrole-ODN copolymers using contactless electro-functionalization. The trapping capabilities of the bio-functionalized micropores were validated using optical microscopy and the resistive-pulse technique by selectively capturing polystyrene microbeads coated with complementary ODN. B or T lymphocytes from a mouse splenocyte suspension were specifically immobilized on micropore walls functionalized with complementary ODN-conjugated antibodies targeting cell surface proteins. Conclusions/Significance The results showed that locally bio-functionalized micropores can isolate target cells from a suspension during their translocation throughout the pore, including among cells of similar dimensions in complex mixtures. PMID:23469221

Optical switches based on surface plasmons

International Nuclear Information System (INIS)

Chen Cong; Wang Pei; Yuan Guanghui; Wang Xiaolei; Min Changjun; Deng Yan; Lu Yonghua; Ming Hai

2008-01-01

Great attention is being paid to surface plasmons (SPs) because of their potential applications in sensors, data storage and bio-photonics. Recently, more and more optical switches based on surface plasmon effects have been demonstrated either by simulation or experimentally. This article describes the principles, advantages and disadvantages of various types of optical switches based on SPs, in particular the all-optical switches. (authors)

Pressure-enhanced light emission and its structural origin in Er:GdVO ₄

Energy Technology Data Exchange (ETDEWEB)

Hong, Fang; Yue, Binbin; Cheng, Zhenxiang; Shen, Hui; Yang, Ke; Hong, Xinguo; Chen, Bin; Mao, Ho-Kwang

2017-01-09

Rare earth phosphors have been widely studied because of their sharp emission lines and excellent optical performance. However, photoluminescence (PL) tuning by crystal field in Er3+ embedded phosphors has always been a challenge. Here, we demonstrate that pressure can help to enhance the red and green light emission simultaneously in Er:GdVO4. Synchrotron X-ray diffraction investigations revealed that a structural phase transition was responsible for the enhancement. Our work brightens the future prospects for applications of Er3+-based PL materials in various fields, such as high power lasers and (bio) medical imaging.

Material requirements for bio-inspired sensing systems

Science.gov (United States)

Biggins, Peter; Lloyd, Peter; Salmond, David; Kusterbeck, Anne

2008-10-01

The aim of developing bio-inspired sensing systems is to try and emulate the amazing sensitivity and specificity observed in the natural world. These capabilities have evolved, often for specific tasks, which provide the organism with an advantage in its fight to survive and prosper. Capabilities cover a wide range of sensing functions including vision, temperature, hearing, touch, taste and smell. For some functions, the capabilities of natural systems are still greater than that achieved by traditional engineering solutions; a good example being a dog's sense of smell. Furthermore, attempting to emulate aspects of biological optics, processing and guidance may lead to more simple and effective devices. A bio-inspired sensing system is much more than the sensory mechanism. A system will need to collect samples, especially if pathogens or chemicals are of interest. Other functions could include the provision of power, surfaces and receptors, structure, locomotion and control. In fact it is possible to conceive of a complete bio-inspired system concept which is likely to be radically different from more conventional approaches. This concept will be described and individual component technologies considered.

New Methods of Enhancing the Thermal Durability of Silica Optical Fibers.

Science.gov (United States)

Wysokiński, Karol; Stańczyk, Tomasz; Gibała, Katarzyna; Tenderenda, Tadeusz; Ziołowicz, Anna; Słowikowski, Mateusz; Broczkowska, Małgorzata; Nasiłowski, Tomasz

2014-10-13

Microstructured optical fibers can be precisely tailored for many different applications, out of which sensing has been found to be particularly interesting. However, placing silica optical fiber sensors in harsh environments results in their quick destruction as a result of the hydrolysis process. In this paper, the degradation mechanism of bare and metal-coated optical fibers at high temperatures under longitudinal strain has been determined by detailed analysis of the thermal behavior of silica and metals, like copper and nickel. We furthermore propose a novel method of enhancing the lifetime of optical fibers by the deposition of electroless nickel-phosphorous alloy in a low-temperature chemical process. The best results were obtained for a coating comprising an inner layer of copper and outer layer of low phosphorous nickel. Lifetime values obtained during the annealing experiments were extrapolated to other temperatures by a dedicated model elaborated by the authors. The estimated copper-coated optical fiber lifetime under cycled longitudinal strain reached 31 h at 450 °C.

Capital effectiveness in a capital intensive project

Energy Technology Data Exchange (ETDEWEB)

Yarossi, M.E. (IPA Institute, The Hague (Netherlands))

2009-07-01

The technical difficulty of incorporating new technology in capital intensive projects has been underestimated. Bio-refineries projects are no exemption. These projects in many occasions have assigned inadequate project resources, such as lean project teams and overly optimistic contingencies. Furthermore, project developers have set unrealistic expectations; for example: aggressive schedule duration, low cost targets and optimistic operability targets. These project drivers set before project's authorization compromise the project's outcome. In many cases, this translates into lower return on investment, higher costs, and lower operability. In order to counteract these outcomes, it is critical for capital intensive projects, like bio-refineries, to have a well define project which will enable to increase its chance of success. IPA's research has shown that bio-refineries projects have poor project performance due to poor project practices, lack of owner project controls and inadequate change management. An adequate risk analysis during definition is a critical component of a project's success, especially when there is new technology, like biomass conversion. It is of outmost importance to asses this technology and set realistic expectations. parallel to this, there is a need to have a well established execution strategy, which should be maintained throughout the execution of the project. In conclusion, IPA's research has indicated that bio-refineries, as any other capital intensive project, need to assign adequate resources at an early state of project development, by making sure there is and adequate team in place, reasonable schedule, technical difficulties evaluation, and keeping control during execution. Although these elements might be seen as common practices that should be taken into account when developing a project, many projects being their execution without having a proper foundation, and thus affecting the project

John Day River Subbasin Fish Habitat Enhancement Project, 2002 Annual Report.

Energy Technology Data Exchange (ETDEWEB)

Powell, Russ M.; Jerome, James P.; Delano, Kenneth H.

2003-03-01

Work undertaken in 2002 included: (1) Seven new fence projects were completed thereby protecting 6.0 miles of stream (2) Completion of 0.7 miles of dredge tail leveling on Granite Creek. (3) New fence construction (300ft) plus one watergap on Indian Creek/ Kuhl property. (4) Maintenance of all active project fences (58.76 miles), watergaps (56), spring developments (32) and plantings were checked and repairs performed. (5) Restoration and Enhancement projects protected 3 miles of stream within the basin. (6) Since the initiation of the Fish Habitat Project in 1984 we have 67.21 miles of stream protected using 124.2 miles of fence. With the addition of the Restoration and Enhancement Projects we have 199.06 miles of fence protecting 124.57 miles of stream.

Bio-fuel barometer

International Nuclear Information System (INIS)

2015-01-01

After a year of doubt and decline the consumption of bio-fuel resumed a growth in 2014 in Europe: +6.1% compared to 2013, to reach 14 millions tep (Mtep) that is just below the 2012 peak. This increase was mainly due to bio-diesel. By taking into account the energy content and not the volume, the consumption of bio-diesel represented 79.7% of bio-fuel consumption in 2014, that of bio-ethanol only 19.1% and that of biogas 1%. The incorporating rate of bio-fuels in fuels used for transport were 4.6% in 2013 and 4.9% in 2014. The trend is good and the future of bio-fuel seems clearer as the European Union has set a not-so-bad limit of 7% for first generation bio-fuels in order to take into account the CASI effect. The CASI effect shows that an increase of the consumption of first generation bio-fuels (it means bio-fuels produced from food crops like rape, soy, cereals, sugar beet,...) implies in fact a global increase in greenhouse gas release that is due to a compensation phenomenon. More uncultivated lands (like forests, grasslands, bogs are turned into cultivated lands in order to compensate lands used for bio-fuel production. In most European countries the consumption of bio-diesel increased in 2014 while it was a bad year for the European industry of ethanol because ethanol prices dropped by 16 %. Oil companies are now among the most important producers of bio-diesel in Europe.

Multifunctional liquid bio fertilizer as an innovative agronomic input for modern agriculture

International Nuclear Information System (INIS)

Phua Choo Kwai Hoe; Khairuddin Abdul Rahim

2010-01-01

Liquid bio fertilizer is increasingly available in the market as one of the alternatives to chemical and organic fertilizers as well as solid substrate-based bio fertilizers. One of the benefits from bio fertilizer is the contribution from population of microorganisms available. These microorganisms may enhance the plant growth and create healthy rhizosphere. The advantage of a liquid bio fertilizer is that no solid carrier is needed. These products are also developed for potential application in modern agriculture such as soil less farming systems, viz. fertigation and hydroponics. Traditionally, liquid bio fertilizer is produced from fermentation of effective microorganisms which was recommended to be used within three months. Therefore, the development of low-cost and long shelf-life liquid bio fertilizers was conducted at Malaysian Nuclear Agency (Nuclear Malaysia). Three bio fertilizer inoculum (phosphate solubilising bacteria and plant growth promoting bacteria) were developed into four formulations of liquid bio fertilizers. The liquid bio fertilizers were kept at low temperatures (9 ± 2 degree Celsius) and room temperatures (28 ± 2 degree Celsius) for shelf-life study. Nutrient broth liquid bio fertilizer kept at low temperatures showed significantly high survival rates after storage for six months as compared to other formulations and treatments. (author)

Bio-remediation of a sludge containing hydrocarbons

International Nuclear Information System (INIS)

Ayotamuno, M.J.; Okparanma, R.N.; Nweneka, E.K.; Ogaji, S.O.T.; Probert, S.D.

2007-01-01

Bio-augmentation has been used as a bio-remediation option for hydrocarbon-contaminated, oily-sludge restoration. This sludge was obtained from the Bonny-Terminal Improvement Project (BTIP) for Bonny Island, near Port Harcourt, Nigeria. Its total hydrocarbon-content (THC) was 69,372 mg/kg of sludge. Three treatment reactors (X, Y and Z) and one control reactor (A) were charged with 1500 g of oily sludge and 250 g of agricultural soil (i.e. an oily sludge to soil ratio of 6:1), the mixture homogenized and allowed to settle for seven days before various CFUs were added to reactors X, Y and Z. Reactor A did not receive any bio-preparation. The agricultural soil served both as a nutrient and a microbe carrier. With regularly scheduled mixing and watering, the THC reduction in the oily sludge varied between 40.7% and 53.2% within two weeks as well as between 63.7% and 84.5% within six weeks of applying the bio-remediation. The CFU counts of the added bio-preparation varied between 1.2 x 12 12 and 3.0 x 10 12 CFU/g of sludge and decreased to 7.0 x 10 11 CFU/g of sludge by the end of the sixth week. The pH of the degrading sludge fluctuated between 6.5 and 7.8 during the same period. When compared with the performance of the indigenous microbes in the control sample, the added bio-preparation evidently increased the THC reduction rate in the oily sludge

Exceptional points enhance sensing in an optical microcavity

Science.gov (United States)

Chen, Weijian; Kaya Özdemir, Şahin; Zhao, Guangming; Wiersig, Jan; Yang, Lan

2017-08-01

Sensors play an important part in many aspects of daily life such as infrared sensors in home security systems, particle sensors for environmental monitoring and motion sensors in mobile phones. High-quality optical microcavities are prime candidates for sensing applications because of their ability to enhance light-matter interactions in a very confined volume. Examples of such devices include mechanical transducers, magnetometers, single-particle absorption spectrometers, and microcavity sensors for sizing single particles and detecting nanometre-scale objects such as single nanoparticles and atomic ions. Traditionally, a very small perturbation near an optical microcavity introduces either a change in the linewidth or a frequency shift or splitting of a resonance that is proportional to the strength of the perturbation. Here we demonstrate an alternative sensing scheme, by which the sensitivity of microcavities can be enhanced when operated at non-Hermitian spectral degeneracies known as exceptional points. In our experiments, we use two nanoscale scatterers to tune a whispering-gallery-mode micro-toroid cavity, in which light propagates along a concave surface by continuous total internal reflection, in a precise and controlled manner to exceptional points. A target nanoscale object that subsequently enters the evanescent field of the cavity perturbs the system from its exceptional point, leading to frequency splitting. Owing to the complex-square-root topology near an exceptional point, this frequency splitting scales as the square root of the perturbation strength and is therefore larger (for sufficiently small perturbations) than the splitting observed in traditional non-exceptional-point sensing schemes. Our demonstration of exceptional-point-enhanced sensitivity paves the way for sensors with unprecedented sensitivity.

BioJS: an open source JavaScript framework for biological data visualization.

Science.gov (United States)

Gómez, John; García, Leyla J; Salazar, Gustavo A; Villaveces, Jose; Gore, Swanand; García, Alexander; Martín, Maria J; Launay, Guillaume; Alcántara, Rafael; Del-Toro, Noemi; Dumousseau, Marine; Orchard, Sandra; Velankar, Sameer; Hermjakob, Henning; Zong, Chenggong; Ping, Peipei; Corpas, Manuel; Jiménez, Rafael C

2013-04-15

BioJS is an open-source project whose main objective is the visualization of biological data in JavaScript. BioJS provides an easy-to-use consistent framework for bioinformatics application programmers. It follows a community-driven standard specification that includes a collection of components purposely designed to require a very simple configuration and installation. In addition to the programming framework, BioJS provides a centralized repository of components available for reutilization by the bioinformatics community. http://code.google.com/p/biojs/. Supplementary data are available at Bioinformatics online.

Detection of Biomolecular Binding Through Enhancement of Localized Surface Plasmon Resonance (LSPR by Gold Nanoparticles

Directory of Open Access Journals (Sweden)

Min-Gon Kim

2009-03-01

Full Text Available To amplify the difference in localized surface plasmon resonance (LSPR spectra of gold nano-islands due to intermolecular binding events, gold nanoparticles were used. LSPR-based optical biosensors consisting of gold nano-islands were readily made on glass substrates using evaporation and heat treatment. Streptavidin (STA and biotinylated bovine serum albumin (Bio-BSA were chosen as the model receptor and the model analyte, respectively, to demonstrate the effectiveness of this detection method. Using this model system, we were able to enhance the sensitivity in monitoring the binding of Bio-BSA to gold nano-island surfaces functionalized with STA through the addition of gold nanoparticle-STA conjugates. In addition, SU-8 well chips with gold nano-island surfaces were fabricated through a conventional UV patterning method and were then utilized for image detection using the attenuated total reflection mode. These results suggest that the gold nano-island well chip may have the potential to be used for multiple and simultaneous detection of various bio-substances.

BioCreative Workshops for DOE Genome Sciences: Text Mining for Metagenomics

Energy Technology Data Exchange (ETDEWEB)

Wu, Cathy H. [Univ. of Delaware, Newark, DE (United States). Center for Bioinformatics and Computational Biology; Hirschman, Lynette [The MITRE Corporation, Bedford, MA (United States)

2016-10-29

The objective of this project was to host BioCreative workshops to define and develop text mining tasks to meet the needs of the Genome Sciences community, focusing on metadata information extraction in metagenomics. Following the successful introduction of metagenomics at the BioCreative IV workshop, members of the metagenomics community and BioCreative communities continued discussion to identify candidate topics for a BioCreative metagenomics track for BioCreative V. Of particular interest was the capture of environmental and isolation source information from text. The outcome was to form a “community of interest” around work on the interactive EXTRACT system, which supported interactive tagging of environmental and species data. This experiment is included in the BioCreative V virtual issue of Database. In addition, there was broad participation by members of the metagenomics community in the panels held at BioCreative V, leading to valuable exchanges between the text mining developers and members of the metagenomics research community. These exchanges are reflected in a number of the overview and perspective pieces also being captured in the BioCreative V virtual issue. Overall, this conversation has exposed the metagenomics researchers to the possibilities of text mining, and educated the text mining developers to the specific needs of the metagenomics community.

The utility of three-dimensional optical projection tomography in nerve injection injury imaging

Czech Academy of Sciences Publication Activity Database

Cvetko, E.; Čapek, Martin; Damjanovska, M.; Reina, M. A.; Eržen, I.; Stopar-Pintarič, T.

2015-01-01

Roč. 70, č. 8 (2015), s. 939-947 ISSN 0003-2409 R&D Projects: GA ČR(CZ) GA13-12412S; GA MŠk(CZ) LH13028 Institutional support: RVO:67985823 Keywords : optical projection tomography * 3D nerve visualization * nerve disruption Subject RIV: EA - Cell Biology Impact factor: 3.794, year: 2015

Mathematical Modelling of Bacterial Populations in Bio-remediation Processes

Science.gov (United States)

Vasiliadou, Ioanna A.; Vayenas, Dimitris V.; Chrysikopoulos, Constantinos V.

2011-09-01

An understanding of bacterial behaviour concerns many field applications, such as the enhancement of water, wastewater and subsurface bio-remediation, the prevention of environmental pollution and the protection of human health. Numerous microorganisms have been identified to be able to degrade chemical pollutants, thus, a variety of bacteria are known that can be used in bio-remediation processes. In this study the development of mathematical models capable of describing bacterial behaviour considered in bio-augmentation plans, such as bacterial growth, consumption of nutrients, removal of pollutants, bacterial transport and attachment in porous media, is presented. The mathematical models may be used as a guide in designing and assessing the conditions under which areas contaminated with pollutants can be better remediated.

Agricultural Bio-Fueled Generation of Electricity and Development of Durable and Efficent NOx Reduction

Energy Technology Data Exchange (ETDEWEB)

Boyd, Rodney

2007-08-08

The objective of this project was to define the scope and cost of a technology research and development program that will demonstrate the feasibility of using an off-the-shelf, unmodified, large bore diesel powered generator in a grid-connected application, utilizing various blends of BioDiesel as fuel. Furthermore, the objective of project was to develop an emissions control device that uses a catalytic process and BioDiesel (without the presence of Ammonia or Urea)to reduce NOx and other pollutants present in a reciprocating engine exhaust stream with the goal of redefining the highest emission reduction efficiencies possible for a diesel reciprocating generator. Process: Caterpillar Power Generation adapted an off-the-shelf Diesel Generator to run on BioDiesel and various Petroleum Diesel/BioDiesel blends. EmeraChem developed and installed an exhaust gas cleanup system to reduce NOx, SOx, volatile organics, and particulates. The system design and function was optimized for emissions reduction with results in the 90-95% range;

Bio-analytical applications of mid-infrared spectroscopy using silver halide fiber-optic probes

International Nuclear Information System (INIS)

Heise, H.M.; Kuepper, L.; Butvina, L.N.

2002-01-01

Infrared-spectroscopy has proved to be a powerful method for the study of various biomedical samples, in particular for in-vitro analysis in the clinical laboratory and for non-invasive diagnostics. In general, the analysis of biofluids such as whole blood, urine, microdialysates and bioreactor broth media takes advantage of the fact that a multitude of analytes can be quantified simultaneously and rapidly without the need for reagents. Progress in the quality of infrared silver halide fibers enabled us to construct several flexible fiber-optic probes of different geometries, which are particularly suitable for the measurement of small biosamples. Recent trends show that dry film measurements by mid-infrared spectroscopy could revolutionize analytical tools in the clinical chemistry laboratory, and an example is given. Infrared diagnostic tools show a promising potential for patients, and minimal-invasive blood glucose assays or skin tissue pathology in particular cannot be left out using mid-infrared fiber-based probes. Other applications include the measurement of skin samples including penetration studies of vitamins and constituents of cosmetic cream formulations. A further field is the micro-domain analysis of biopsy samples from bog mummified corpses, and recent results on the chemistry of dermis and hair samples are reported. Another field of application, for which results are reported, is food analysis and bio-reactor monitoring

A project management framework for enhanced productivity performance using building information modelling

Directory of Open Access Journals (Sweden)

Longhui Liao

2017-09-01

Full Text Available Although the Singapore government has mandated submissions of building plans in building information modelling (BIM format since July 2013, this does not yet seem to lead to enhanced productivity performance. BIM collaboration between designers and downstream contractors appears to remain inadequate. While many studies have been conducted on using BIM for better project outcomes, studies that relate BIM with the identification of non-value adding activities in the project lifecycle and the reduction of the resulting wastes are at infancy stage. This paper aims to propose a project management framework for enhancing the productivity of building projects in Singapore, which forms Phase I of an ongoing research project. A two-pronged approach is presented. Firstly, non-value adding activities in the current project delivery process that uses BIM partially in Singapore are identified by comparing the typical current process with full BIM-based processes; such activities are cut down after process transformation in terms of people, process, and technology. Secondly, time savings derived from reducing the wastes caused by these activities are quantified. The proposed framework was validated by a case study of a local residential project. It was concluded that this framework provides a valuable tool for project teams to enhance productivity performance.

Washoe Tribe Nevada Inter-Tribal Energy Consortium Energy Organization Enhancement Project Final Report

Energy Technology Data Exchange (ETDEWEB)

Johnson, Jennifer [Washoe Tribe of NV and Ca

2014-11-06

The Washoe Tribe of Nevada and California was awarded funding from the Department of Energy to complete the Nevada Inter-Tribal Energy Consortium Energy Organization Enhancement Project. The main goal of the project was to enhance the capacity of the Nevada Inter-Tribal Energy Consortium (NITEC) to effectively assist tribes within Nevada to technically manage tribal energy resources and implement tribal energy projects.

Optical design applications for enhanced illumination performance

Science.gov (United States)

Gilray, Carl; Lewin, Ian

1995-08-01

Nonimaging optical design techniques have been applied in the illumination industry for many years. Recently however, powerful software has been developed which allows accurate simulation and optimization of illumination devices. Wide experience has been obtained in using such design techniques for practical situations. These include automotive lighting where safety is of greatest importance, commercial lighting systems designed for energy efficiency, and numerous specialized applications. This presentation will discuss the performance requirements of a variety of illumination devices. It will further cover design methodology and present a variety of examples of practical applications for enhanced system performance.

Making perfect life : bio-engineering (in) the 21st century : interim study

NARCIS (Netherlands)

Est, van R.; Keulen, van I.; Geesink, I.; Schuiff, M.

2010-01-01

Reportnumber: PE 438.829; This document is the result of the preparatory phase of the STOA-project "Making perfect life", that defined the project focus. This resulted in the study document Making Perfect Life: Bio-engineering (in) the 21st century. A project plan for the next two phases was

Vacancy-Rich Monolayer BiO2-x as a Highly Efficient UV, Visible, and Near-Infrared Responsive Photocatalyst.

Science.gov (United States)

Li, Jun; Wu, Xiaoyong; Pan, Wenfeng; Zhang, Gaoke; Chen, Hong

2018-01-08

Vacancy-rich layered materials with good electron-transfer property are of great interest. Herein, a full-spectrum responsive vacancy-rich monolayer BiO 2-x has been synthesized. The increased density of states at the conduction band (CB) minimum in the monolayer BiO 2-x is responsible for the enhanced photon response and photo-absorption, which were confirmed by UV/Vis-NIR diffuse reflectance spectra (DRS) and photocurrent measurements. Compared to bulk BiO 2-x , monolayer BiO 2-x has exhibited enhanced photocatalytic performance for rhodamine B and phenol removal under UV, visible, and near-infrared light (NIR) irradiation, which can be attributed to the vacancy V Bi-O ''' as confirmed by the positron annihilation spectra. The presence of V Bi-O ''' defects in monolayer BiO 2-x promoted the separation of electrons and holes. This finding provides an atomic level understanding for developing highly efficient UV, visible, and NIR light responsive photocatalysts. © 2018 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Optical absorption enhancement in silicon nanowire arrays with a large lattice constant for photovoltaic applications.

Science.gov (United States)

Lin, Chenxi; Povinelli, Michelle L

2009-10-26

In this paper, we use the transfer matrix method to calculate the optical absorptance of vertically-aligned silicon nanowire (SiNW) arrays. For fixed filling ratio, significant optical absorption enhancement occurs when the lattice constant is increased from 100 nm to 600 nm. The enhancement arises from an increase in field concentration within the nanowire as well as excitation of guided resonance modes. We quantify the absorption enhancement in terms of ultimate efficiency. Results show that an optimized SiNW array with lattice constant of 600 nm and wire diameter of 540 nm has a 72.4% higher ultimate efficiency than a Si thin film of equal thickness. The enhancement effect can be maintained over a large range of incidence angles.

Measurement of the linewidth enhancement factor based on nonlinear polarization rotation of semiconductor optical amplifier.

Science.gov (United States)

Liu, Guodong; Wu, Chongqing; Wang, Fu; Zhang, Tianyong; Shang, Chao; Gao, Kaiqiang

2015-06-01

A simple measurement scheme of the linewidth enhancement factor based on the nonlinear polarization rotation of a semiconductor optical amplifier is proposed. Considering the polarization dependent gain, the relationship between the linewidth enhancement factor and the Stokes vector was derived theoretically. It is proven that the linewidth enhancement factor can be calculated directly from the Stokes parameters without any other assistant measurement system. The results demonstrate that the linewidth enhancement factor varies in a small range from 10.5 to 8.5 for TE mode and from 8.2 to 5.8 for TM mode, respectively, when the input optical power varies from 50 μW to 1 mW and the bias current varies from 90 to 170 mA.

Enhanced energy storage in chaotic optical resonators

KAUST Repository

Liu, Changxu; Di Falco, Andrea; Molinari, Diego P.; Khan, Yasser; Ooi, Boon S.; Krauss, Thomas F.; Fratalocchi, Andrea

2013-01-01

Chaos is a phenomenon that occurs in many aspects of contemporary science. In classical dynamics, chaos is defined as a hypersensitivity to initial conditions. The presence of chaos is often unwanted, as it introduces unpredictability, which makes it difficult to predict or explain experimental results. Conversely, we demonstrate here how chaos can be used to enhance the ability of an optical resonator to store energy. We combine analytic theory with ab initio simulations and experiments in photonic-crystal resonators to show that a chaotic resonator can store six times more energy than its classical counterpart of the same volume. We explain the observed increase by considering the equipartition of energy among all degrees of freedom of the chaotic resonator (that is, the cavity modes) and discover a convergence of their lifetimes towards a single value. A compelling illustration of the theory is provided by enhanced absorption in deformed polystyrene microspheres. © 2013 Macmillan Publishers Limited. All rights reserved.

Enhanced energy storage in chaotic optical resonators

KAUST Repository

Liu, Changxu

2013-05-05

Chaos is a phenomenon that occurs in many aspects of contemporary science. In classical dynamics, chaos is defined as a hypersensitivity to initial conditions. The presence of chaos is often unwanted, as it introduces unpredictability, which makes it difficult to predict or explain experimental results. Conversely, we demonstrate here how chaos can be used to enhance the ability of an optical resonator to store energy. We combine analytic theory with ab initio simulations and experiments in photonic-crystal resonators to show that a chaotic resonator can store six times more energy than its classical counterpart of the same volume. We explain the observed increase by considering the equipartition of energy among all degrees of freedom of the chaotic resonator (that is, the cavity modes) and discover a convergence of their lifetimes towards a single value. A compelling illustration of the theory is provided by enhanced absorption in deformed polystyrene microspheres. © 2013 Macmillan Publishers Limited. All rights reserved.

Bio-functional subwavelength optical waveguides for biodetection

Energy Technology Data Exchange (ETDEWEB)

Sirbuly, D J; Fischer, N; Huang, S; Artyukhin, A

2007-07-10

We report a versatile biofunctional subwavelength photonic device platform for real-time detection of biological molecules. Our devices contain lipid bilayer membranes fused onto metal oxide nanowire waveguides stretched across polymeric flow channels. The lipid bilayers incorporating target receptors are submersed in the propagating evanescent field of the optical cavity. We show that the lipid bilayers in our devices are continuous, have very high mobile fraction, and are resistant to fouling. We also demonstrate that our platform allows rapid membrane exchange. Finally we use this device for detection of specific DNA sequences in solution by anchoring complementary DNA target strands in the lipid bilayer. This evanescent wave sensing architecture holds great potential for portable, all-optical detection systems.

Cyanobacteria: A precious bio-resource in agriculture, ecosystem and environmental sustainability

Directory of Open Access Journals (Sweden)

Jay Shankar eSingh

2016-04-01

Full Text Available Keeping in view the challenges concerning agro-ecosystem and environment, the recent developments in biotechnology offers a more reliable approach to address the food security for future generations and also resolve the complex environmental problems. Several unique features of cyanobacteria such as oxygenic photosynthesis, high biomass yield, growth on non-arable lands and a wide variety of water sources (contaminated and polluted waters, generation of useful by-products and bio-fuels, enhancing the soil fertility and reducing green house gas emissions, have collectively offered these bio-agents as the precious bio-resource for sustainable development. Cyanobacterial biomass is the effective bio-fertilizer source to improve soil physico-chemical characteristics such as water-holding capacity and mineral nutrient status of the degraded lands. The unique characteristics of cyanobacteria include their ubiquity presence, short generation time and capability to fix the atmospheric N2. Similar to other prokaryotic bacteria, the cyanobacteria are increasingly applied as bio-inoculants for improving soil fertility and environmental quality. Genetically engineered cyanobacteria have been devised with the novel genes for the production of a number of bio-fuels such as bio-diesel, bio-hydrogen, bio-methane, syngas and therefore, open new avenues for the generation of bio-fuels in the economically sustainable manner. This review is an effort to enlist the valuable information about the qualities of cyanobacteria and their potential role in solving the agricultural and environmental problems for the future welfare of the planet.

Cyanobacteria: A Precious Bio-resource in Agriculture, Ecosystem, and Environmental Sustainability

Science.gov (United States)

Singh, Jay Shankar; Kumar, Arun; Rai, Amar N.; Singh, Devendra P.

2016-01-01

Keeping in view, the challenges concerning agro-ecosystem and environment, the recent developments in biotechnology offers a more reliable approach to address the food security for future generations and also resolve the complex environmental problems. Several unique features of cyanobacteria such as oxygenic photosynthesis, high biomass yield, growth on non-arable lands and a wide variety of water sources (contaminated and polluted waters), generation of useful by-products and bio-fuels, enhancing the soil fertility and reducing green house gas emissions, have collectively offered these bio-agents as the precious bio-resource for sustainable development. Cyanobacterial biomass is the effective bio-fertilizer source to improve soil physico-chemical characteristics such as water-holding capacity and mineral nutrient status of the degraded lands. The unique characteristics of cyanobacteria include their ubiquity presence, short generation time and capability to fix the atmospheric N2. Similar to other prokaryotic bacteria, the cyanobacteria are increasingly applied as bio-inoculants for improving soil fertility and environmental quality. Genetically engineered cyanobacteria have been devised with the novel genes for the production of a number of bio-fuels such as bio-diesel, bio-hydrogen, bio-methane, synga, and therefore, open new avenues for the generation of bio-fuels in the economically sustainable manner. This review is an effort to enlist the valuable information about the qualities of cyanobacteria and their potential role in solving the agricultural and environmental problems for the future welfare of the planet. PMID:27148218

Establishment of a cervical cancer bio-bank for the Chinese population: from project-based sample collection to routine management.

Science.gov (United States)

Yang, Ru; Li, Xiong; Zhou, Hang; Jia, Yao; Zhou, Jin; Huang, Kecheng; Tang, Fangxu; Hu, Ting; Shen, Jian; Chen, Zhilan; Wang, Shaoshuai; Sun, Haiying; Guo, Lili; Wang, Lin; Wang, Hui; Ma, Ding; Li, Shuang

2015-08-01

There is an increasing need for the establishment of a cervical cancer bio-bank that will facilitate both clinical and basic research. The cervical cancer bio-bank was first established in January 1999 and included two stages. First, a GWAS-based sample collection was conducted with special emphasis on the diagnosis and the retrieval of the corresponding bio-specimens, especially blood samples. Second, clinical data and their corresponding bio-specimens were routinely collected and handled. Notably, these bio-specimens also included samples from Wufeng Tujia Autonomous County, which has the highest incidence of cervical cancer in China. The specimens were collected from patients with cervical cancer and those with cervical intraepithelial neoplasia, while the control samples were collected from normal individuals. With special emphasis on clinical data and blood samples for the GWAS analysis, the collection of other bio-specimens was slow, and the pairing of specimens and clinical data was poor during the first stage. However, in the second stage, the pairing of the clinical data and its corresponding bio-specimens improved. At present, the samples procured and preserved in the bio-bank cover most regions of China and different ethnic groups for both the normal controls and cervical cancer patients of different pathological categories. This bio-bank of cervical cancer specimens from the Chinese population will greatly promote the studies of cervical cancer in China.

Functionalized 2PP structures for the BioPhotonics Workstation

DEFF Research Database (Denmark)

Matsuoka, Tomoyo; Nishi, Masayuki; Sakakura, Masaaki

2011-01-01

In its standard version, our BioPhotonics Workstation (BWS) can generate multiple controllable counter-propagating beams to create real-time user-programmable optical traps for stable three-dimensional control and manipulation of a plurality of particles. The combination of the platform with micr...... on the BWS platform by functionalizing them with silica-based sol-gel materials inside which dyes can be entrapped....

Manipulation of nanoparticles and biological samples through enhanced optical forces

Science.gov (United States)

Wilson, Benjamin

Non-invasive optical manipulation of particles has emerged as a powerful and versatile tool for biological study and nanotechnology. We propose and demonstrate large scale nanoparticle assembly using opto-thermal force produced by conventional optical tweezers. This method is shown to allow precise concentration and assembly of particles including carbon-nanotubes, VO2 nanorods, and CdTe quantum dots. Assembled devices were shown to have good contact with patterned electrodes. In addition, we propose and demonstrate a purely optical approach to rotate and align particles using the interaction of polarized light with photonic crystal nanostructures to generate enhanced trapping force. With a weakly focused laser beam we observed efficient trapping and transportation of polystyrene beads with sizes ranging from 10 microm down to 190 nm as well as cancer cell nuclei. In addition, we demonstrated alignment of non-spherical particles using a 1-D photonic crystal structure. Bacterial cells were trapped, rotated and aligned with optical intensity as low as 17 microW/microm 2. This approach can be extended to using 2-D photonic crystal nanostructures for full rotation control.

Community Connections to Enhance Undergraduate International Business Education: An Example of Business Consulting Projects

Science.gov (United States)

Annavarjula, Madan; Trifts, Jack W.

2012-01-01

Practical project experience as a means of augmenting traditional classroom learning has long been viewed as a value adding curricular exercise. While students participating in the projects gain valuable skills that will enhance their personal marketability, successful projects also benefit the client companies involved and help enhance the image…

Analysis of Norwegian bio energy statistics. Quality improvement proposals; Analyse av norsk bioenergistatistikk. Forslag til kvalitetsheving

Energy Technology Data Exchange (ETDEWEB)

NONE

2011-07-01

This report is an assessment of the current model and presentation form of bio energy statistics. It appears proposed revision and enhancement of both collection and data representation. In the context of market development both in general for energy and particularly for bio energy and government targets, a good bio energy statistics form the basis to follow up the objectives and means.(eb)

Israel Marine Bio-geographic Database (ISRAMAR-BIO)

Science.gov (United States)

Greengrass, Eyal; Krivenko, Yevgeniya; Ozer, Tal; Ben Yosef, Dafna; Tom, Moshe; Gertman, Isaac

2015-04-01

The knowledge of the space/time variations of species is the basis for any ecological investigations. While historical observations containing integral concentrations of biological parameters (chlorophyll, abundance, biomass…) are organized partly in ISRAMAR Cast Database, the taxon-specific data collected in Israel has not been sufficiently organized. This has been hindered by the lack of standards, variability of methods and complexity of biological data formalization. The ISRAMAR-BIO DB was developed to store various types of historical and future available information related to marine species observations and related metadata. Currently the DB allows to store biological data acquired by the following sampling devices such as: van veer grab, box corer, sampling bottles, nets (plankton, trawls and fish), quadrates, and cameras. The DB's logical unit is information regarding a specimen (taxa name, barcode, image), related attributes (abundance, size, age, contaminants…), habitat description, sampling device and method, time and space of sampling, responsible organization and scientist, source of information (cruise, project and publication). The following standardization of specimen and attributes naming were implemented: Taxonomy according to World Register of Marine Species (WoRMS: http://www.marinespecies.org). Habitat description according to Coastal and Marine Ecological Classification Standards (CMECS: http://www.cmecscatalog.org) Parameter name; Unit; Device name; Developmental stage; Institution name; Country name; Marine region according to SeaDataNet Vocabularies (http://www.seadatanet.org/Standards-Software/Common-Vocabularies). This system supports two types of data submission procedures, which support the above stated data structure. The first is a downloadable excel file with drop-down fields based on the ISRAMAR-BIO vocabularies. The file is filled and uploaded online by the data contributor. Alternatively, the same dataset can be assembled by

Electromagnetic field enhancement and spectrum shaping through plasmonically integrated optical vortices.

Science.gov (United States)

Ahn, Wonmi; Boriskina, Svetlana V; Hong, Yan; Reinhard, Björn M

2012-01-11

We introduce a new design approach for surface-enhanced Raman spectroscopy (SERS) substrates that is based on molding the optical powerflow through a sequence of coupled nanoscale optical vortices "pinned" to rationally designed plasmonic nanostructures, referred to as Vortex Nanogear Transmissions (VNTs). We fabricated VNTs composed of Au nanodiscs by electron beam lithography on quartz substrates and characterized their near- and far-field responses through combination of computational electromagnetism, and elastic and inelastic scattering spectroscopy. Pronounced dips in the far-field scattering spectra of VNTs provide experimental evidence for an efficient light trapping and circulation within the nanostructures. Furthermore, we demonstrate that VNT integration into periodic arrays of Au nanoparticles facilitates the generation of high E-field enhancements in the VNTs at multiple defined wavelengths. We show that spectrum shaping in nested VNT structures is achieved through an electromagnetic feed-mechanism driven by the coherent multiple scattering in the plasmonic arrays and that this process can be rationally controlled by tuning the array period. The ability to generate high E-field enhancements at predefined locations and frequencies makes nested VNTs interesting substrates for challenging SERS applications. © 2011 American Chemical Society

Guided-Wave Optical Biosensors

Science.gov (United States)

Passaro, Vittorio M. N.; Dell'Olio, Francesco; Casamassima, Biagio; De Leonardis, Francesco

2007-01-01

Guided-wave optical biosensors are reviewed in this paper. Advantages related to optical technologies are presented and integrated architectures are investigated in detail. Main classes of bio receptors and the most attractive optical transduction mechanisms are discussed. The possibility to use Mach-Zehnder and Young interferometers, microdisk and microring resonators, surface plasmon resonance, hollow and antiresonant waveguides, and Bragg gratings to realize very sensitive and selective, ultra-compact and fast biosensors is discussed. Finally, CMOS-compatible technologies are proved to be the most attractive for fabrication of guided-wave photonic biosensors.

Comparisons of spectrally-enhanced asymmetrically-clipped optical OFDM systems.

Science.gov (United States)

Lowery, Arthur James

2016-02-22

Asymmetrically clipped optical orthogonal frequency-division multiplexing (ACO-OFDM) is a technique that sacrifices spectral efficiency in order to transmit an orthogonally frequency-division multiplexed signal over a unipolar channel, such as a directly modulated direct-detection fiber or free-space channel. Several methods have been proposed to regain this spectral efficiency, including: asymmetrically clipped DC-biased optical OFDM (ADO-OFDM), enhanced U-OFDM (EU-OFDM), spectral and energy efficient OFDM (SEE-OFDM), Hybrid-ACO-OFDM and Layered-ACO-OFDM. This paper presents simulations up to high-order constellation sizes to show that Layered-ACO-OFDM offers the highest receiver sensitivity for a given optical power at spectral efficiencies above 3 bit/s/Hz. For comparison purposes, white Gaussian noise is added at the receiver, component nonlinearities are not considered, and the fiber is considered to be linear and dispersion-less. The simulations show that LACO-OFDM has a 7-dB sensitivity advantage over DC-biased OFDM (DCO-OFDM) for 1024-QAM at 87.5% of DCO-OFDM's spectral efficiency, at the same bit rate and optical power. This is approximately equivalent to a 4.4-dB advantage at the same spectral efficiency of 87.7% if 896-QAM were to be used for DCO-OFDM.

New Methods of Enhancing the Thermal Durability of Silica Optical Fibers

Directory of Open Access Journals (Sweden)

Karol Wysokiński

2014-10-01

Full Text Available Microstructured optical fibers can be precisely tailored for many different applications, out of which sensing has been found to be particularly interesting. However, placing silica optical fiber sensors in harsh environments results in their quick destruction as a result of the hydrolysis process. In this paper, the degradation mechanism of bare and metal-coated optical fibers at high temperatures under longitudinal strain has been determined by detailed analysis of the thermal behavior of silica and metals, like copper and nickel. We furthermore propose a novel method of enhancing the lifetime of optical fibers by the deposition of electroless nickel-phosphorous alloy in a low-temperature chemical process. The best results were obtained for a coating comprising an inner layer of copper and outer layer of low phosphorous nickel. Lifetime values obtained during the annealing experiments were extrapolated to other temperatures by a dedicated model elaborated by the authors. The estimated copper-coated optical fiber lifetime under cycled longitudinal strain reached 31 h at 450 °C.

MSU-Northern Bio-Energy Center of Excellence

Energy Technology Data Exchange (ETDEWEB)

Kegel, Greg [Montana State Univ., Bozeman, MT (United States); Alcorn-Windy Boy, Jessica [Montana State Univ., Bozeman, MT (United States); Abedin, Md. Joynal [Montana State Univ., Bozeman, MT (United States); Maglinao, Randy [Montana State Univ., Bozeman, MT (United States)

2014-09-30

MSU-Northern established the Bio-Energy Center (the Center) into a Regional Research Center of Excellence to address the obstacles concerning biofuels, feedstock, quality, conversion process, economic viability and public awareness. The Center built its laboratories and expertise in order to research and support product development and commercialization for the bio-energy industry in our region. The Center wanted to support the regional agricultural based economy by researching biofuels based on feedstock’s that can be grown in our region in an environmentally responsible manner. We were also interested in any technology that will improve the emissions and fuel economy performance of heavy duty diesel engines. The Center had a three step approach to accomplish these goals: 1. Enhance the Center’s research and testing capabilities 2. Develop advanced biofuels from locally grown agricultural crops. 3. Educate and outreach for public understanding and acceptance of new technology. The Center was very successful in completing the tasks as outlined in the project plan. Key successes include discovering and patenting a new chemical conversion process for converting camelina oil to jet fuel, as well as promise in developing a heterogeneous Grubs catalyst to support the new chemical conversion process. The Center also successfully fragmented and deoxygenated naturally occurring lignin with a Ni-NHC catalyst, showing promise for further exploration of using lignin for fuels and fuel additives. This would create another value-added product for lignin that can be sourced from beetle kill trees or waste products from cellulose ethanol fuel facilities.

BIOS Security Analysis and a Kind of Trusted BIOS

Science.gov (United States)

Zhou, Zhenliu; Xu, Rongsheng

The BIOS's security threats to computer system are analyzed and security requirements for firmware BIOS are summarized in this paper. Through discussion about TCG's trust transitivity, a new approach about CRTM implementation based on BIOS is developed. In this paper, we also put forward a new trusted BIOS architecture-UTBIOS which is built on Intel Framework for EFI/UEFI. The trustworthiness of UTBIOS is based on trusted hardware TPM. In UTBIOS, trust encapsulation and trust measurement are used to construct pre-OS trust chain. Performance of trust measurement is also analyzed in the end.

Characterization of bio char derived from tapioca skin

Science.gov (United States)

Hasnan, F. I.; Iamail, K. N.; Musa, M.; Jaapar, J.; Alwi, H.; Hamid, K. K. K.

2018-03-01

Pyrolysis of tapioca skin was conducted to produce bio chars in the range between 500°C–800°C. Surface modification treatment were performed on bio chars by using chemicals within 24 hours at 30°C and hot water within 1 hour to enhance the bio char’s adsorption properties according to surface area, pore volume, pore size, crystallinity structure and functional groups. The samples were characterized by using BET, XRD, FTIR and Methylene Blue adsorption. Based on BET result, it showed the surface area increased as the pyrolysis temperature increased followed by pore volume and pore size for S0. The optimum temperature for SNaOH, SHW and SMeOH was at 600°C, 700°C and 800°C with the surface area of 75.9874, 274.5066 and 351.5531 m2/g respectively compared to S0 while SP3HO4 has the worst result since it felt on macroporous structure. The percentage of MB adsorption was followed the size of bio chars surface area. Based on FTIR result, at temperature 500°C to 700°C, the bio chars still have functional groups while at 800°C, many functional groups were diminished due to high temperature struck on them. XRD result showed all the bio chars were amorphous. In conclusion, the best surface modification treatment was by Methanol followed by hot water and Sodium Hydroxide at temperature of 700°C and 800°C while Ortho-Phosphoric acid was the worst one and was not suitable for bio char’s surface modification for adsorption purpose.

EcAMSat and BioSentinel: Autonomous Bio Nanosatellites Addressing Strategic Knowledge Gaps for Manned Spaceflight Beyond LEO

Science.gov (United States)

Padgen, Mike

2017-01-01

Manned missions beyond low Earth orbit (LEO) require that several strategic knowledge gaps about the effects of space travel on the human body be addressed. NASA Ames Research Center has been the leader in developing autonomous bio nanosatellites, including past successful missions for GeneSat, PharmaSat, and OOREOS, that tackled some of these issues. These nanosatellites provide in situ measurements, which deliver insight into the dynamic changes in cell behavior in microgravity. In this talk, two upcoming bio nanosatellites developed at Ames, the E. coli Antimicrobial Satellite (EcAMSat) and BioSentinel, will be discussed. Both satellites contain microfluidic systems that precisely deliver nutrients to the microorganisms stored within wells of fluidic cards. Each well, in turn, has its own 3-color LED and detector system which is used to monitor changes in metabolic activity with alamarBlue, a redox indicator, and the optical density of the cells. EcAMSat investigates the effects of microgravity on bacterial resistance to antimicrobial drugs, vital knowledge for understanding how to maintain the health of astronauts in long-term and beyond LEO spaceflight. The behavior of wild type and mutant uropathic E. coli will be compared in microgravity and with ground data to help understand the molecular mechanisms behind antibiotic resistance and how these phenotypes might change in space. BioSentinel seeks to directly measure the effects of space radiation on budding yeast S. cerevisiae, particularly double strand breaks (DSB). While hitching a ride on the SLS EM-1 mission (Orions first unmanned mission to the moon) in 2018, BioSentinel will be kicked off and enter into a heliocentric orbit, becoming the first study of the effects of radiation on living organisms outside LEO since the Apollo program. The yeast are stored in eighteen independent 16-well microfluidic cards, which will be individually activated over the 12 month mission duration. In addition to the wild

Photo- and bio-reactivity patterns of dissolved organic matter from biomass and soil leachates and surface waters in a subtropical wetland.

Science.gov (United States)

Chen, Meilian; Jaffé, Rudolf

2014-09-15

Dissolved organic carbon (DOC) measurements and optical properties were applied to assess the photo- and bio-reactivity of dissolved organic matter (DOM) from different sources, including biomass leaching, soil leaching and surface waters in a subtropical wetland ecosystem. Samples were exposed to light and/or dark incubated through controlled laboratory experiments. Changes in DOC, ultraviolet (UV-Vis) visible absorbance, and excitation-emission matrix (EEM) fluorescence combined with parallel factor analysis (PARAFAC) were performed to assess sample degradation. Degradation experiments showed that while significant amounts of DOC were consumed during bio-incubation for biomass leachates, a higher degree of bio-recalcitrance for soil leachate and particularly surface waters was displayed. Photo- and bio-humification transformations were suggested for sawgrass, mangrove, and seagrass leachates, as compared to substantial photo-degradation and very little to almost no change after bio-incubation for the other samples. During photo-degradation in most cases the EEM-PARAFAC components displayed photo-decay as compared to a few cases which featured photo-production. In contrast during bio-incubation most EEM-PARAFAC components proved to be mostly bio-refractory although some increases and decreases in abundance were also observed. Furthermore, the sequential photo- followed by bio-degradation showed, with some exceptions, a "priming effect" of light exposure on the bio-degradation of DOM, and the combination of these two processes resulted in a DOM composition more similar to that of the natural surface water for the different sub-environments. In addition, for leachate samples there was a general enrichment of one of the EEM-PARAFAC humic-like component (Ex/Em: bio-degradation process. This study exemplifies the effectiveness of optical property and EEM-PARAFAC in the assessment of DOM reactivity and highlights the importance of the coupling of photo- and bio

[Effect of bio-charcoal on the trans of polycyclic aromatic hydrocarbons in soil-plant system with composted sludge application].

Science.gov (United States)

Hua, Li; Chen, Ying-xu; Wu, Wei-xiang; Ma, Hong-rui

2009-08-15

The effects of bio-charcoal acted as sludge-composting additive on soil characteristics and plant growth were studied. Compared with the treatment of composted sludge without bio-charcoal, soil cation exchange capacity in treatment of composted sludge with bio-charcoal increased over 5% and 10% respectively and soil nitrogen content increased 13% and 18% respectively for two kind soils. The composted sludge with bio-charcoal also resulted in 23% higher enhancement on ryegrass biomass and 8%-10% higher enhancement on ryegrass chlorophyll content. In addition, with the amendment of bio-charcoal, the bioavailability of polycyclic aromatic hydrocarbons (PAHs) in composted sludge was decreased, which resulted in the lower absorption and accumulation of ryegrass to PAHs. Compared with the control, the PAHs concentration in ryegrass amended composted sludge with bio-charcoal decreased 27%-34%. The results indicated that composted sludge with bio-charcoal resulted in much more improvement on the plant growth as well as less negative effect on environment. Therefore, biocharcoal was in favor of the safe land application of sewage sludge.

Distributed fiber optic sensing enhances pipeline safety and security

Energy Technology Data Exchange (ETDEWEB)

Frings, Jochen; Walk, Tobias [ILF Consulting Engineers, Munich (Germany)

2011-09-15

Pipelines are efficient, highly reliable and safe means of transportation. However, despite intensive right of way surveillance by foot, car and out of the air, pipeline leaks and illegal tappings are a reality - sometimes with catastrophic results. These events show a gap in real-time monitoring caused by the highly distributed nature of pipelines. Parts of this gap now can be closed with distributed fiber optic sensing technology. Using various physical effects this technology is apt to detect temperature, strain, vibrations and sound with very good localization over spans up to 50 km with a single sensor cable. Various field tested applications like leakage detection, third party activity monitoring and intrusion detection or ground movement detection as well as integrity monitoring proof that distributed fiber optic sensing can enhance pipeline safety and security. (orig.)

Natural product derivative BIO promotes recovery after myocardial infarction via unique modulation of the cardiac microenvironment

Science.gov (United States)

Kim, Yong Sook; Jeong, Hye-yun; Kim, Ah Ra; Kim, Woong-Hee; Cho, Haaglim; Um, JungIn; Seo, Youngha; Kang, Wan Seok; Jin, Suk-Won; Kim, Min Chul; Kim, Yong-Chul; Jung, Da-Woon; Williams, Darren R.; Ahn, Youngkeun

2016-01-01

The cardiac microenvironment includes cardiomyocytes, fibroblasts and macrophages, which regulate remodeling after myocardial infarction (MI). Targeting this microenvironment is a novel therapeutic approach for MI. We found that the natural compound derivative, BIO ((2′Z,3′E)-6-Bromoindirubin-3′-oxime) modulated the cardiac microenvironment to exert a therapeutic effect on MI. Using a series of co-culture studies, BIO induced proliferation in cardiomyocytes and inhibited proliferation in cardiac fibroblasts. BIO produced multiple anti-fibrotic effects in cardiac fibroblasts. In macrophages, BIO inhibited the expression of pro-inflammatory factors. Significantly, BIO modulated the molecular crosstalk between cardiac fibroblasts and differentiating macrophages to induce polarization to the anti-inflammatory M2 phenotype. In the optically transparent zebrafish-based heart failure model, BIO induced cardiomyocyte proliferation and completely recovered survival rate. BIO is a known glycogen synthase kinase-3β inhibitor, but these effects could not be recapitulated using the classical inhibitor, lithium chloride; indicating novel therapeutic effects of BIO. We identified the mechanism of BIO as differential modulation of p27 protein expression and potent induction of anti-inflammatory interleukin-10. In a rat MI model, BIO reduced fibrosis and improved cardiac performance. Histological analysis revealed modulation of the cardiac microenvironment by BIO, with increased presence of anti-inflammatory M2 macrophages. Our results demonstrate that BIO produces unique effects in the cardiac microenvironment to promote recovery post-MI. PMID:27510556

Silver nanoparticles as optical clearing agent enhancers to improve caries diagnostic by optical coherence tomography

Science.gov (United States)

Carneiro, Vanda S. M.; Mota, Cláudia C. B. O.; Souza, Alex F.; da Silva, Evair J.; da Silva, Andrea F.; Gerbi, Marleny E. M. M.; Gomes, Anderson S. L.

2018-02-01

The use of silver nanoparticles as optical clearing agent (OCA) enhancers to improve caries diagnostic by optical coherence tomography (OCT) is demonstrated here. Five molars with no evident cavitation were selected. The OCAs were based on aqueous solution of silver nanoparticles (AgNP, 1.18x 1014 particles/mL, ø ≈ 10nm) and its dilution at 10% in glycerol. Teeth were placed on a platform with a micrometric screw, and after applying the OCAs, they were scanned with a Callisto SD-OCT system operating ate 930nm central wavelength. The occlusal surfaces were scanned by OCT, capturing crosssectional images with 8 mm transversal scanning, generating numerical matrices (2000x512). The OCT images had their transverse dimension preserved. AgNP-OCAs promoted image stretching due to the modification in the light optical path caused by AgNP-OCAs refractive indices close to that of the enamel. AgNP-OCAs evidenced the enamel birefringence and highlighted initial demineralization areas, that presented defined margins with higher contrast between sound and demineralized regions, with higher OCT signal intensity in those areas.

Enhancing DNA binding rate using optical trapping of high-density gold nanodisks

International Nuclear Information System (INIS)

Lin, En-Hung; Pan, Ming-Yang; Lee, Ming-Chang; Wei, Pei-Kuen

2014-01-01

We present the dynamic study of optical trapping of fluorescent molecules using high-density gold nanodisk arrays. The gold nanodisks were fabricated by electron beam lithography with a diameter of 500 nm and a period of 1 μm. Dark-field illumination showed ∼15 times enhancement of fluorescence near edges of nanodisks. Such enhanced near-field generated an optical trapping force of ∼10 fN under 3.58 × 10 3 W/m 2 illumination intensity as calculated from the Brownian motions of 590 nm polystyrene beads. Kinetic observation of thiolated DNA modified with Cy5 dye showed different binding rates of DNA under different illumination intensity. The binding rate increased from 2.14 × 10 3 s −1 (I = 0.7 × 10 3 W/m 2 ) to 1.15 × 10 5 s −1 (I = 3.58 × 10 3 W/m 2 ). Both enhanced fluorescence and binding rate indicate that gold nanodisks efficiently improve both detection limit and interaction time for microarrays

Umatilla River Basin Anadromous Fish Habitat Enhancement Project : 1995 Annual Report.

Energy Technology Data Exchange (ETDEWEB)

Shaw, R.Todd

1996-05-01

During the 1995 - 96 project period, four new habitat enhancement projects were implemented under the Umatilla River Basin Anadromous Fish Habitat Enhancement Project by the Confederated Tribes of the Umatilla Indian Reservation (CTUIR) in the upper Umatilla River Basin. A total of 38,644 feet of high tensile smooth wire fencing was constructed along 3.6 miles of riparian corridor in the Meacham Creek, Wildhorse Creek, Greasewood Creek, West Fork of Greasewood Creek and Mission Creek watersheds. Additional enhancements on Wildhorse Creek and the lower Greasewood Creek System included: (1) installation of 0.43 miles of smooth wire between river mile (RM) 10.25 and RM 10.5 Wildhorse Creek (fence posts and structures had been previously placed on this property during the 1994 - 95 project period), (2) construction of 46 sediment retention structures in stream channels and maintenance to 18 existing sediment retention structures between RM 9.5 and RM 10.25 Wildhorse Creek, and (3) revegetation of stream corridor areas and adjacent terraces with 500 pounds of native grass seed or close species equivalents and 5,000 native riparian shrub/tree species to assist in floodplain recovery, stream channel stability and filtering of sediments during high flow periods. U.S. Fish and Wildlife Service (USFWS), Bureau of Indian Affairs (BIA) and Environmental Protection Agency (EPA) funds were cost shared with Bonneville Power Administration (BPA) funds, provided under this project, to accomplish habitat enhancements. Water quality monitoring continued and was expanded for temperature and turbidity throughout the upper Umatilla River Watershed. Physical habitat surveys were conducted on the lower 13 river miles of Wildhorse Creek and within the Greasewood Creek Project Area to characterize habitat quality and to quantify various habitat types by area.

Resonantly enhanced nonlinear optics in semiconductor quantum wells: An application to sensitive infrared detection

International Nuclear Information System (INIS)

Yelin, S.F.; Hemmer, P.R.

2002-01-01

A novel class of coherent nonlinear optical phenomena, involving induced transparency in semiconductor quantum wells, is considered in the context of a particular application to sensitive long-wavelength infrared detection. It is shown that the strongest decoherence mechanisms can be suppressed or mitigated, resulting in substantial enhancement of nonlinear optical effects in semiconductor quantum wells

Observation of vacuum-enhanced electron spin resonance of optically levitated nanodiamonds

Science.gov (United States)

Li, Tongcang; Hoang, Thai; Ahn, Jonghoon; Bang, Jaehoon

Electron spins of diamond nitrogen-vacancy (NV) centers are important quantum resources for nanoscale sensing and quantum information. Combining such NV spin systems with levitated optomechanical resonators will provide a hybrid quantum system for many novel applications. Here we optically levitate a nanodiamond and demonstrate electron spin control of its built-in NV centers in low vacuum. We observe that the strength of electron spin resonance (ESR) is enhanced when the air pressure is reduced. To better understand this novel system, we also investigate the effects of trap power and measure the absolute internal temperature of levitated nanodiamonds with ESR after calibration of the strain effect. Our results show that optical levitation of nanodiamonds in vacuum not only can improve the mechanical quality of its oscillation, but also enhance the ESR contrast, which pave the way towards a novel levitated spin-optomechanical system for studying macroscopic quantum mechanics. The results also indicate potential applications of NV centers in gas sensing.

San Pablo Bay Tidal Marsh Enhancement and Water Quality Improvement Project

Science.gov (United States)

Information about the SFBWQP San Pablo Bay Tidal Marsh Enhancement and Water Quality Improvement Project, part of an EPA competitive grant program to improve SF Bay water quality focused on restoring impaired waters and enhancing aquatic resources.

Customization of Protein Single Nanowires for Optical Biosensing.

Science.gov (United States)

Sun, Yun-Lu; Sun, Si-Ming; Wang, Pan; Dong, Wen-Fei; Zhang, Lei; Xu, Bin-Bin; Chen, Qi-Dai; Tong, Li-Min; Sun, Hong-Bo

2015-06-24

An all-protein single-nanowire optical biosensor is constructed by a facile and general femtosecond laser direct writing approach with nanoscale structural customization. As-formed protein single nanowires show excellent optical properties (fine waveguiding performance and bio-applicable transmission windows), and are utilized as evanescent optical nanobiosensors for label-free biotin detection. © 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

3.6-m Devasthal Optical Telescope Project: Completion and first results

Science.gov (United States)

Kumar, Brijesh; Omar, Amitesh; Maheswar, Gopinathan; Pandey, Anil Kumar; Sagar, Ram; Uddin, Wahab; Sanwal, Basant Ballabh; Bangia, Tarun; Kumar, Tripurari Satyanarayana; Yadav, Shobhit; Sahu, Sanjit; Pant, Jayshreekar; Reddy, Bheemireddy Krishna; Gupta, Alok Chandra; Chand, Hum; Pandey, Jeewan Chandra; Joshi, Mohit Kumar; Jaiswar, Mukeshkuma; Nanjappa, Nandish; Purushottam; Yadav, Rama Kant Singh; Sharma, Saurabh; Pandey, Shashi Bhushan; Joshi, Santosh; Joshi, Yogesh Chandra; Lata, Sneh; Mehdi, Biman Jyoti; Misra, Kuntal; Singh, Mahendra

2018-04-01

We present an update on the 3.6-m aperture optical telescope, which has been installed at Devasthal in the year 2016. In this paper, a brief overview of installation activities at site and first results are presented. The 3.6-m Devasthal Optical Telescope project was initiated in 2007 by the Aryabhatta Research Institute of Observational Sciences (ARIES; Nainital, India) in partnership with Belgium. The telescope has Ritchey-Chretien optics, an alt-azimuth mount, an active control of the primary and a corrected science field of view of 30' at the Cassegrain focus. The construction of the telescope enclosure building was completed in June 2014 and after successful installation of the telescope. The first engineering light was obtained on 22 March 2015. The on-sky performance of the telescope was carried out till February 2016.

Status of bio energy based on forest material - from the stub to the stove door; Status for bioenergi basert paa skogsvirke - fra stubben til ovnsdoera

Energy Technology Data Exchange (ETDEWEB)

Lileng, Joern K.; Gjoelsjoe, Simen

1999-07-01

It is not well documented in Norway who possesses the competence and who is the user of forest material as bio fuel. Forest material is forest chips, secondary products from forestry, and firewood. The project reported was a literature study that throws light on the problem by referring to central persons and institutions in this field. The report also is a general introduction to bio energy based on forest material. The principle sections deal with (1) Climate policy, (2) Energy carriers based on forest material, (3) Systems for selection and treatment of bio fuel, (4) Methods for calculation of the supply of biomass in the forest, (5) Returning ash to the forest, (6) Transport, (7) Storage, (8) Assessment of bio energy, (9) Abstract of relevant Norwegian reports, (10) Bio energy projects and bio energy actors in Norway and (11) Proposed research projects and research work on forest material as fuel.