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Sample records for binary hammerhead ribozymes

  1. LNA nucleotides improve cleavage efficiency of singular and binary hammerhead ribozymes

    DEFF Research Database (Denmark)

    Christiansen, Janne K; Lobedanz, Sune; Arar, Khalil;

    2007-01-01

    concentrations, it was found that insertion of LNA monomers into the substrate binding arms allowed these to be shortened and results in a very active enzyme under both single and multiple turnover conditions. Incorporation of a mix of LNA and DNA residues further increased the multiple turnover cleavage...... activity. At high Mg(2+) concentrations or high substrate and ribozyme concentrations, the enhancing effect of LNA incorporation was even more prominent. Using LNA in the stem of Helix II diminished cleavage activity, but allowed deletion of the tetra-loop and thus separating the ribozyme into two...

  2. Ionic interactions and the global conformations of the hammerhead ribozyme

    DEFF Research Database (Denmark)

    Bassi, G S; Møllegaard, N E; Murchie, A I;

    1995-01-01

    Here we investigate the global conformation of the hammerhead ribozyme. Electrophoretic studies demonstrate that the structure is folded in response to the concentration and type of ions present. Folding based on colinear alignment of arms II and III is suggested, with a variable angle subtended ...

  3. Experimental cancer gene therapy by multiple anti-survivin hammerhead ribozymes

    Institute of Scientific and Technical Information of China (English)

    Qi Fei; Yuwen Ke; Xuebiao Yao; Jingde Zhu; Hongyu Zhang; Lili Fu; Xinlan Dai; Baomei Gao; Min Ni; Chao Ge; Jinjun Li; Xia Ding

    2008-01-01

    To improve the efficacy of gene therapy for cancer, we designed four hammerhead ribozyme adenoviruses (R1 to R4) targeting the exposed regions of survivin mRNA. In addition to the in vitro characterization, which included a determination of the sequence specificity of cleavage by primer extension, assays for cell proliferation and for in vivo tumor growth were used to score for ribozyme efficiency.The resulting suppression of survivin expression induced mitotic catastrophe and cell death via the caspase-3-dependent pathway. Importantly, administration of the ribozyme adenoviruses inhibited tumor growth in a hepato-cellular carcinoma xenograft mouse model. Co-expression of R1, R3 and R4 ribozymes synergistically suppressed survivin and, as this combination targets all major forms of the survivin transcripts, produced the most potent anti-cancer effects. The adenoviruses carrying the multiple hammerhead ribozymes described in this report offered a robust gene therapy strategy against cancer.

  4. Capturing hammerhead ribozyme structures in action by modulating general base catalysis.

    Directory of Open Access Journals (Sweden)

    Young-In Chi

    2008-09-01

    Full Text Available We have obtained precatalytic (enzyme-substrate complex and postcatalytic (enzyme-product complex crystal structures of an active full-length hammerhead RNA that cleaves in the crystal. Using the natural satellite tobacco ringspot virus hammerhead RNA sequence, the self-cleavage reaction was modulated by substituting the general base of the ribozyme, G12, with A12, a purine variant with a much lower pKa that does not significantly perturb the ribozyme's atomic structure. The active, but slowly cleaving, ribozyme thus permitted isolation of enzyme-substrate and enzyme-product complexes without modifying the nucleophile or leaving group of the cleavage reaction, nor any other aspect of the substrate. The predissociation enzyme-product complex structure reveals RNA and metal ion interactions potentially relevant to transition-state stabilization that are absent in precatalytic structures.

  5. Expression and in vitro cleavage activity of anti-caspase-7 hammerhead ribozymes

    Institute of Scientific and Technical Information of China (English)

    Wei Zhang; Qing Xie; Xia-Qiu Zhou; Shan Jiang; You-Xin Jin

    2004-01-01

    AIM: To prepare hammerhead ribozymes against mouse caspase-7 and identify their cleavage activityin vitro, in order to select a ribozyme with specific cleavage activity against mouse caspase-7 as a potential gene therapy for apoptosis-related diseases.METHODS: Anti-caspase-7 ribozymes targeting sites 333and 394 (named Rz333 and Rz394) were designed by computer software, and their DNA sequences encoding ribozymes were synthesized. Caspase-7 DNA sequence was acquired by RT-PCR. Ribozymes and caspase-7 DNA obtained byin vitro transcription were cloned into pBSKneo U6' and pGEM-T vectors, respectively. The cleavage activity of ribozymes against mouse caspase-7 was identified by cleavage experimentsin vitro.RESULTS: Rz333 and Rz394 were designed and their DNA sequences were synthesized respectively. The expression vector of caspase-7 and plasmids containing Rz333 and Rz394 were reconstructed successfully. Ribozymes and caspase-7 mRNA were expressed byin vitro transcription.In vitro cleavage experiment showed that 243-nt and 744-nt segments were produced after caspase-7 mRNA was mixed with Rz333 in equivalent, and the cleavage efficiency was 67.98%. No cleaved segment was observed when caspase-7 mRNA was mixed with Rz394.CONCLUSION: Rz333 can site-specific cleave mouse caspase-7 mRNA, and it shows a potential for gene therapy of apoptosis-related diseases by down-regulating gene expression of caspase-7.

  6. Spiegelzymes: sequence specific hydrolysis of L-RNA with mirror image hammerhead ribozymes and DNAzymes.

    Directory of Open Access Journals (Sweden)

    Eliza Wyszko

    Full Text Available In this manuscript we describe for the first time mirror image catalytic nucleic acids (Spiegelzymes, which hydrolyze sequence specifically L-ribonucleic acid molecules. The mirror image nucleic acid ribozymes designed are based upon the known hammerhead ribozyme and DNAzyme structures that contain L-ribose or L-deoxyribose instead of the naturally occurring D-ribose or D-deoxyribose, respectively. Both Spiegelzymes show similar hydrolytic activities with the same L-RNA target molecules and they also exhibit extra ordinary stabilities when tested with three different human sera. In this respect they are very similar to Spiegelmers (mirror image aptamers, which we had previously developed and for which it has been shown that they are non-toxic and non-immunogenic. Since we are also able to demonstrate that the hammerhead and DNAzyme Spiegelzymes can also hydrolyze mirror image oligonucleotide sequences, like they occur in Spiegelmers, in vivo, it seems reasonable to assume that Spiegelzymes may in principle be used as an antidote against Spiegelmers. Since the Spiegelzymes contain the same building blocks as the Spiegelmers, it can be expected that they will have similar favorable biological characteristics concerning toxicity and immunogenety. In trying to understand the mechanism of action of the Spiegelzymes described in this study, we have initiated for the first time a model building system with L-nucleic acids. The models for L-hammerhead ribozyme and L-DNAzyme interaction with the same L-RNA target will be presented.

  7. Effect of hammerhead ribozyme that specifically cleaves c-myc mRNA on proliferation of vascular smooth muscle cells

    Institute of Scientific and Technical Information of China (English)

    栾荣华; 贾国良; 李伟; 贾战生; 连建奇

    2003-01-01

    Ojective: To investigate the effect of hammerhead ribozyme that specifically cleaves c-myc mRNA on the proliferation of vascular smooth muscle cells (VSMCs). Methods: Based on the computer analysis of the secondary structure of c-myc mRNA, nt 2029 in rat c-myc oncogene was selected as a cleaving site for hammerhead ribozyme and the ribozyme was designed. With automatic DNA synthesizer, the two complementary DNA strands of the ribozyme were synthesized. The ribozyme gene was cloned into pGEM3Zf (+) vector and subcloned into eukaryotic expression pcDNA3 vector. The recombinant pcDNA-Rz was transfected into the cultured rat VSMCs by lipofectAMINE mediated DNA transfection protocol and individual cell clones were selected by G418. Results: The sequence of ribozyme gene inserted in pGEM3Zf (+) vector was proved to be perfectly correct. In VSMCs transfected with recombinant pcDNA-Rz, flow cytometry analysis showed that the S phase and G2/M fractions were decreased significantly and cell proliferation stagnated in the G0/G1 phase. Conclusion: The results suggest that hammerhead ribozyme that specifically cleaves c-myc mRNA can significantly inhibit the proliferation of VSMCs.

  8. Connective tissue growth factor hammerhead ribozyme attenuates human hepatic stellate cell function

    Institute of Scientific and Technical Information of China (English)

    Run-Ping Gao; David R Brigstock

    2009-01-01

    AIM: To determine the effect of hammerhead ribozyme targeting connective tissue growth factor (CCN2) on human hepatic stellate cell (HSC) function. METHODS: CCN2 hammerhead ribozyme cDNA plus two self-cleaving sequences were inserted into pTriEx2 to produce pTriCCN2-Rz. Each vector was individually transfected into cultured LX-2 human HSCs, which were then stimulated by addition of transforming growth factor (TGF)-b1 to the culture medium. Semiquantitative RT-PCR was used to determine mRNA levels for CCN2 or collagen Ⅰ, while protein levels of each molecule in cell lysates and conditioned medium were measured by ELISA. Cell-cycle progression of the transfected cells was assessed by flow cytometry. RESULTS: In pTriEx2-transfected LX-2 cells, TGF-β1 treatment caused an increase in the mRNA level for CCN2 or collagen Ⅰ, and an increase in produced and secreted CCN2 or extracellular collagen Ⅰ protein levels. pTriCCN2-Rz-transfected LX-2 cells showed decreased basal CCN2 or collagen mRNA levels, as well as produced and secreted CCN2 or collagen Ⅰ protein. Furthermore, the TGF-b1-induced increase in mRNA or protein for CCN2 or collagen Ⅰ was inhibited partially in pTriCCN2-Rz-transfected LX-2 cells. Inhibition of CCN2 using hammerhead ribozyme cDNA resulted in fewer of the cells transitioning into S phase. CONCLUSION: Endogenous CCN2 is a mediator of basal or TGF-b1-induced collagen Ⅰ production in human HSCs and regulates entry of the cells into Sphase.

  9. Fast and simple purification of chemically modified hammerhead ribozymes using a lipophilic capture tag.

    OpenAIRE

    Sproat, B S; Rupp, T; Menhardt, N; Keane, D.; Beijer, B

    1999-01-01

    A new type of 5'-lipophilic capture tag is described, enabling the facile reverse phase HPLC purification of chemically modified hammerhead ribozymes (oligozymes) whilst still carrying the 2'-O-tert.-butyldimethylsilyl protection of the essential riboses. In its most convenient form, the capture tag consists of a simple diol, such as hexan-1,6-diol, which at one end is attached via a silyl residue to a highly lipophilic entity such as tocopherol (vitamin E) or cholesterol, and the other end i...

  10. Ligation of RNA Oligomers by the Schistosoma mansoni Hammerhead Ribozyme in Frozen Solution.

    Science.gov (United States)

    Lie, Lively; Biliya, Shweta; Vannberg, Fredrik; Wartell, Roger M

    2016-03-01

    The interstitial liquid phase within frozen aqueous solutions is an environment that minimizes RNA degradation and facilitates reactions that may have relevance to the RNA World hypothesis. Previous work has shown that frozen solutions support condensation of activated nucleotides into RNA oligomers, RNA ligation by the hairpin ribozyme, and RNA synthesis by a RNA polymerase ribozyme. In the current study, we examined the activity of a hammerhead ribozyme (HHR) in frozen solution. The Schistosoma mansoni hammerhead ribozyme, which predominantly cleaves RNA, can ligate its cleaved products (P1 and P2) with yields up to ~23 % in single turnover experiments at 25 °C in the presence of Mg(2+). Our studies show that this HHR ligates RNA oligomers in frozen solution in the absence of divalent cations. Citrate and other anions that exhibit strong ion-water affinity enhanced ligation. Yields up to 43 % were observed in one freeze-thaw cycle and a maximum of 60 % was obtained after several freeze-thaw cycles using wild-type P1 and P2. Truncated and mutated P1 substrates were ligated to P2 with yields of 14-24 % in one freeze-thaw cycle. A pool of P2 substrates with mixtures of all four bases at five positions were ligated with P1 in frozen solution. High-throughput sequencing indicated that 70 of the 1024 possible P2 sequences were represented in ligated products at 1000 or more read counts per million reads. The results indicate that the HHR can ligate a range of short RNA oligomers into an ensemble of diverse sequences in ice.

  11. Structure, dynamics, and function of the hammerhead ribozyme in bulk water and at a clay mineral surface from replica exchange molecular dynamics.

    Science.gov (United States)

    Swadling, Jacob B; Wright, David W; Suter, James L; Coveney, Peter V

    2015-03-01

    Compared with proteins, the relationship between structure, dynamics, and function of RNA enzymes (known as ribozymes) is far less well understood, despite the fact that ribozymes are found in many organisms and are often conceived as "molecular fossils" of the first self-replicating molecules to have arisen on Earth. To investigate how ribozymal function is governed by structure and dynamics, we study the full hammerhead ribozyme in bulk water and in an aqueous clay mineral environment by computer simulation using replica-exchange molecular dynamics. Through extensive sampling of the major conformational states of the hammerhead ribozyme, we are able to show that the hammerhead manifests a free-energy landscape reminiscent of that which is well known in proteins, exhibiting a "funnel" topology that guides the ribozyme into its globally most stable conformation. The active-site geometry is found to be closely correlated to the tertiary structure of the ribozyme, thereby reconciling conflicts between previously proposed mechanisms for the self-scission of the hammerhead. The conformational analysis also accounts for the differences reported experimentally in the catalytic activity of the hammerhead ribozyme, which is reduced when interacting with clay minerals as compared with bulk water.

  12. Activity identification of chimeric anti-caspase-3 mRNA hammerhead ribozyme in vitro and in vivo

    Institute of Scientific and Technical Information of China (English)

    XU; Renhuan; (

    2001-01-01

    [1]Andrew, F., Gerard, E., A license to kill, Cell, 1996, 85: 781-784.[2]Thornberry, N. A., Lazebnik, Y., Caspases: Enemies within, Science, 1998, 281: 1312-1316.[3]Kijima, H., Ishida, H., Ohkawa, T. et al., Therapeutic application of ribozymes, Pharmacol. Ther., 1995, 68: 247-264.[4]Phylactou, L. A., Kilpatrick, M. W., Wood, M. J., Ribozymes as therapeutic tools for genetic disease, Hum. Mol. Genet., 1998, 7(10): 1649-1653.[5]Bettrand, E., Pictet, R ., Grange, T., Can heamerhead ribozymes be efficient tools inactivate gene function? Nucleic Acids Res., 1994, 22: 293-300.[6]Lieber, A., Strauss, M., Selection of efficient cleavage sites in target RNAs by using a ribozyme expression library, Mol. Cell Biol., 1995, 15: 540-551.[7]Xu, R. H., Zhou, X. Q., Xie, Q. et al., Preparation and identification of hammerhead ribozyme in vitro against rat caspase-3 mRNA fragment, Chin. J. Hepatol., 2000,8: 361-363.[8]Liu, J., Jin, Y. X., Wang, D. B., A novel vector for abundant expression of antisense RNA, triplex-forming RNA and ribozyme in vivo, High Technology Letters, 2000, 6: 84-88.[9]Sambrook, J., Fritsch, E. F., Maniatis, T., Molecular Cloning: A Laboratory Manual, 2nd ed., New York: Cold Spring Harbor Laboratory Press, 1989.[10]Porter, A. G., J?nicke, R. U., Emerging roles of caspase-3 in apoptosis, Cell Death Differ, 1999, 6: 99-104.[11]Cryns, V., Yuan, J., Proteases to die for, Genes Dev., 1998, 12: 1551-1570.[12]Narendra, K. V., Anikumar, R. K., Fritz, E., Recent developments in the hammerhead ribozyme field, Nucleic Acids Research, 1998, 26: 5237-5242.

  13. Preparation of anti-mouse caspase-12 mRNA hammerhead ribozyme and identification of its activity in vitro

    Institute of Scientific and Technical Information of China (English)

    Shan Jiang; Qing Xie; Wei Zhang; Xia-Qiu Zhou; You-Xin Jin

    2005-01-01

    AIM: To prepare and identify specific anti-mouse caspase12 hammerhead ribozymes in vitro, in order to select a more effective ribozyme against mouse caspase-12 as a potential tool to rescue cells from endoplasmic reticulum stress induced apoptosis.METHODS: Two hammerhead ribozymes directed separately against 138 and 218 site of nucleotide of mouse caspase-12 mRNA were designed by computer software,and their DNA sequences were synthesized. The synthesized ribozymes were cloned into an eukaryotic expression vector-neorpBSKU6 and embedded in U6 SnRNA context for further study. Mouse caspase-12 gene segment was cloned into PGEM-T vector under the control of T7 RNA polymerase promoter (containing gene sequence from positions nt 41 to nt 894) as target. In vitro transcription both the ribozymes and target utilize T7 promoter. The target was labeled with [α-32P]UTP, while ribozymes were not labeled. After gel purification the RNAs were dissolved in RNase free water. Ribozyme and target were incubated for 90 min at 37 ℃ in reaction buffer (40 mmol/L Tris-HCL,pH 7.5, 10 mmol/L Mg2+). Molar ratio of ribozyme vs target was 30:1. Samples were analyzed on 6% PAGE (containing 8 mol/L urea).RESULTS: Both caspase-12 and ribozyme gene sequences were successfully cloned into expression vector confirmed by sequencing. Ribozymes and caspase-12 mRNA were obtained by in vitro transcription. Cleavage experiment showed that in a physiological similar condition (37 ℃,pH 7.5), Rz138 and Rz218 both cleaved targets at predicted sites, for Rz138 the cleavage efficiency was about 100%,for Rz218 the value was 36.66%.CONCLUSION: Rz138 prepared in vitro can site specific cleave mouse caspase-12 mRNA with an excellent efficiency. It shows a potential to suppress the expression of caspase-12 in vivo, thus provided a new way to protect cells from ER stress induced apoptosis.

  14. EXPLORATION OF SCHISTOSOMA MANSONI HAMMERHEAD RIBOZYME CATALYSIS AND STRUCTURE: TOWARDS DIRECT OBSERVATION OF CLEAVAGE AND LIGATION, AND A 1.55 Å FULL-LENGTH MG2+-BOUND CRYSTAL STRUCTURE

    OpenAIRE

    Anderson, Michael

    2012-01-01

    As a relatively simple and well-studied molecule, the hammerhead ribozyme is an ideal system to study RNA catalysis and structure. A deeper understanding of the hammerhead catalytic mechanism and the role of divalent ions in catalysis lends support to the exploration of more complex RNA machinery such as the ribosome, and ultimately may assist in the design of new medical therapies. Kinetic study of the hammerhead ribozyme to date has largely derived from bulk assays monitoring millions of ...

  15. Inhibition of Hepatitis B Virus Replication and Expression in Vitro and in Vivo by the Hammerhead Ribozymes Targeted Different Sites

    Institute of Scientific and Technical Information of China (English)

    Wei; Dai; Rong; Zhou; Hong; Yu; Xiao-juan; Li

    2012-01-01

    Objective To develop an effective and specific medicine targeting hepatitis B virus(HBV) pregenome. Based on the identified accessible target sites for hammerhead ribozyme in our previous researches, a recombinant hepatitis delta virus(HDV) ribozyme was chosen and used to demonstrate the effective cleavage in vitro and in vivo. Methods Three hammerhead ribozymes for potential target sites(S, X and C genes) and co-expression plasmid(pTr-dB, pTdδ-dB, pTrX-dB and pTrC-dB) as well as four HDV-ribozyme chimera constructs with HBV(pTdXX, pTdXC, pTdSX and pTdSC) were severally chosen to validate the inhibition of the replication and expression of HBV. The co-expression plasmids(pTdδ and pTr-Db) in physiological saline were hydrodynamically injected to mice by tail vein. Results Compared with the group injected with pTr-dB in Huh-7 cell, hepatitis B surface antigen(HBsAg) was reduced by 31% in the group injected with pTdδ-dB, by 54%, 26%, 72% and 97% in the group injected with recombinant-ribozymes pTdSX, pTdSC, pTdXC and pTdXX, respectively. The inhibiting effects of endogenous ribozymes RzX and RzC on the HBsAg expression were 66% and 57%, respectively. Compared with the positive control, the amount of HBsAg was decreased in mice injected with pTdXX through tail vein by 88% and 96% on the second day and the third day, respectively. HBsAg was undetectable on the 6th day and could not primitively be detected on the 9th day in the sera from all mice. HBV DNA was not detected in the sera of BALB/c mice injected with pTdXX-dB, pTrX-dB or replicating-defective plasmid pHBV, while HBV DNA replication in control group could be detected on the 6th day. While HBcAg could not be detected in liver tissues of mice injected with plasmid pTdXX-dB on the 3rd day. Conclusions Encoding regions of HBV S, C and X gene were the effective cleavage sites for hammerhead ribozyme in vitro and in vivo, which provides basis for further construction of therapeutic recombinant HDV and the

  16. Antiviral Hammerhead Ribozymes Are Effective for Developing Transgenic Suppression of Chikungunya Virus in Aedes aegypti Mosquitoes.

    Science.gov (United States)

    Mishra, Priya; Furey, Colleen; Balaraman, Velmurugan; Fraser, Malcolm J

    2016-01-01

    The chikungunya virus (CHIKV) is an emerging pathogen with widespread distribution in regions of Africa, India, and Asia that threatens to spread into temperate climates with the introduction of its major vector, Aedes albopictus. CHIKV causes a disease frequently misdiagnosed as dengue fever, with potentially life-threatening symptoms that can result in a longer-term debilitating arthritis. The increasing risk of spread from endemic regions via human travel and commerce and the current absence of a vaccine put a significant proportion of the world population at risk for this disease. In this study we designed and tested hammerhead ribozymes (hRzs) targeting CHIKV structural protein genes of the RNA genome as potential antivirals both at the cellular and in vivo level. We employed the CHIKV strain 181/25, which exhibits similar infectivity rates in both Vero cell cultures and mosquitoes. Virus suppression assay performed on transformed Vero cell clones of all seven hRzs demonstrated that all are effective at inhibiting CHIKV in Vero cells, with hRz #9 and #14 being the most effective. piggyBac transformation vectors were constructed using the Ae. aegypti t-RNA(val) Pol III promoted hRz #9 and #14 effector genes to establish a total of nine unique transgenic Higgs White Eye (HWE) Ae. aegypti lines. Following confirmation of transgene expression by real-time polymerase chain reaction (RT-PCR), comparative TCID50-IFA analysis, in situ Immuno-fluorescent Assays (IFA) and analysis of salivary CHIKV titers demonstrated effective suppression of virus replication at 7 dpi in heterozygous females of each of these transgenic lines compared with control HWE mosquitoes. This report provides a proof that appropriately engineered hRzs are powerful antiviral effector genes suitable for population replacement strategies. PMID:27294950

  17. Antiviral Hammerhead Ribozymes Are Effective for Developing Transgenic Suppression of Chikungunya Virus in Aedes aegypti Mosquitoes

    Directory of Open Access Journals (Sweden)

    Priya Mishra

    2016-06-01

    Full Text Available The chikungunya virus (CHIKV is an emerging pathogen with widespread distribution in regions of Africa, India, and Asia that threatens to spread into temperate climates with the introduction of its major vector, Aedes albopictus. CHIKV causes a disease frequently misdiagnosed as dengue fever, with potentially life-threatening symptoms that can result in a longer-term debilitating arthritis. The increasing risk of spread from endemic regions via human travel and commerce and the current absence of a vaccine put a significant proportion of the world population at risk for this disease. In this study we designed and tested hammerhead ribozymes (hRzs targeting CHIKV structural protein genes of the RNA genome as potential antivirals both at the cellular and in vivo level. We employed the CHIKV strain 181/25, which exhibits similar infectivity rates in both Vero cell cultures and mosquitoes. Virus suppression assay performed on transformed Vero cell clones of all seven hRzs demonstrated that all are effective at inhibiting CHIKV in Vero cells, with hRz #9 and #14 being the most effective. piggyBac transformation vectors were constructed using the Ae. aegypti t-RNAval Pol III promoted hRz #9 and #14 effector genes to establish a total of nine unique transgenic Higgs White Eye (HWE Ae. aegypti lines. Following confirmation of transgene expression by real-time polymerase chain reaction (RT-PCR, comparative TCID50-IFA analysis, in situ Immuno-fluorescent Assays (IFA and analysis of salivary CHIKV titers demonstrated effective suppression of virus replication at 7 dpi in heterozygous females of each of these transgenic lines compared with control HWE mosquitoes. This report provides a proof that appropriately engineered hRzs are powerful antiviral effector genes suitable for population replacement strategies

  18. Mechanistic studies of copper(II)-aminoglycoside mediated DNA damage and magnesium catalyzed nuclease activity of hammerhead ribozyme

    Science.gov (United States)

    Patwardhan, Anjali A.

    The antibacterial activity of aminoglycosides stems from their high affinity binding to the 16S rRNA in bacteria resulting in inhibition of protein synthesis. Used to treat acute bacterial infections these antibiotics have limited applications due to their high dosage requirements and the emergence of resistant strains. We have synthesized and characterized Cu(II) derivatives of the aminoglycosides, kanamycin A, tobramycin, neamine, kanamycin B, neomycin B, and paromomycin. The first three exhibit preferential and tight binding to Cu(II) as against neomycin B and kanamycin B and paromomycin. EPR of frozen solutions and UV-visible spectroscopy suggest a change in geometry around the Cu(II) but the stabilities of the complexes in water differ. These copper derivatives efficiently cleave plasmid DNA at micromolar concentrations (hydrolytic) and at nanomolar concentrations in the presence co-reactants like hydrogen peroxide or ascorbic acid. Hydrolysis is multi turnover and exhibits Michelis-Menten kinetics with enzyme-like behavior whereas oxidative cleavage is highly specific with C-4' H abstraction resulting in characteristic base propenal and nucleotide base products. Hydroxyl radicals generated are copper based and are generated in close proximity of the substrate. Hammerhead ribozymes are selectively hydrolyzed in the presence of divalent ions with Mg2+ being the metal ion of choice in vivo . Our studies with complex ions like cobalt hexaammine and fac-triamminetriaquochromium(III) establish outer sphere interactions of Mg2+ with the hammerhead in the catalytic site. There are two sets of sites, one structural and one catalytic. Complex ions in the catalytic site and divalent ions in the structural site result in a slow but active hammerhead ribozyme suggesting that the complex ions are not inhibitory, contrary to what was suggested previously.

  19. Phylogenetic footprinting of non-coding RNA: hammerhead ribozyme sequences in a satellite DNA family of Dolichopoda cave crickets (Orthoptera, Rhaphidophoridae

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    Venanzetti Federica

    2010-01-01

    Full Text Available Abstract Background The great variety in sequence, length, complexity, and abundance of satellite DNA has made it difficult to ascribe any function to this genome component. Recent studies have shown that satellite DNA can be transcribed and be involved in regulation of chromatin structure and gene expression. Some satellite DNAs, such as the pDo500 sequence family in Dolichopoda cave crickets, have a catalytic hammerhead (HH ribozyme structure and activity embedded within each repeat. Results We assessed the phylogenetic footprints of the HH ribozyme within the pDo500 sequences from 38 different populations representing 12 species of Dolichopoda. The HH region was significantly more conserved than the non-hammerhead (NHH region of the pDo500 repeat. In addition, stems were more conserved than loops. In stems, several compensatory mutations were detected that maintain base pairing. The core region of the HH ribozyme was affected by very few nucleotide substitutions and the cleavage position was altered only once among 198 sequences. RNA folding of the HH sequences revealed that a potentially active HH ribozyme can be found in most of the Dolichopoda populations and species. Conclusions The phylogenetic footprints suggest that the HH region of the pDo500 sequence family is selected for function in Dolichopoda cave crickets. However, the functional role of HH ribozymes in eukaryotic organisms is unclear. The possible functions have been related to trans cleavage of an RNA target by a ribonucleoprotein and regulation of gene expression. Whether the HH ribozyme in Dolichopoda is involved in similar functions remains to be investigated. Future studies need to demonstrate how the observed nucleotide changes and evolutionary constraint have affected the catalytic efficiency of the hammerhead.

  20. Phylogenetic footprinting of non-coding RNA: hammerhead ribozyme sequences in a satellite DNA family of Dolichopoda cave crickets (Orthoptera, Rhaphidophoridae)

    OpenAIRE

    Venanzetti Federica; Johnsen Arild; Martinsen Lene; Bachmann Lutz

    2010-01-01

    Abstract Background The great variety in sequence, length, complexity, and abundance of satellite DNA has made it difficult to ascribe any function to this genome component. Recent studies have shown that satellite DNA can be transcribed and be involved in regulation of chromatin structure and gene expression. Some satellite DNAs, such as the pDo500 sequence family in Dolichopoda cave crickets, have a catalytic hammerhead (HH) ribozyme structure and activity embedded within each repeat. Resul...

  1. Structural and catalytic effects of an invariant purine substitution in the hammerhead ribozyme: implications for the mechanism of acid-base catalysis.

    Science.gov (United States)

    Schultz, Eric P; Vasquez, Ernesto E; Scott, William G

    2014-09-01

    The hammerhead ribozyme catalyzes RNA cleavage via acid-base catalysis. Whether it does so by general acid-base catalysis, in which the RNA itself donates and abstracts protons in the transition state, as is typically assumed, or by specific acid-base catalysis, in which the RNA plays a structural role and proton transfer is mediated by active-site water molecules, is unknown. Previous biochemical and crystallographic experiments implicate an invariant purine in the active site, G12, as the general base. However, G12 may play a structural role consistent with specific base catalysis. To better understand the role of G12 in the mechanism of hammerhead catalysis, a 2.2 Å resolution crystal structure of a hammerhead ribozyme from Schistosoma mansoni with a purine substituted for G12 in the active site of the ribozyme was obtained. Comparison of this structure (PDB entry 3zd4), in which A12 is substituted for G, with three previously determined structures that now serve as important experimental controls, allows the identification of structural perturbations that are owing to the purine substitution itself. Kinetic measurements for G12 purine-substituted schistosomal hammerheads confirm a previously observed dependence of rate on the pK(a) of the substituted purine; in both cases inosine, which is similar to G in pK(a) and hydrogen-bonding properties, is unexpectedly inactive. Structural comparisons indicate that this may primarily be owing to the lack of the exocyclic 2-amino group in the G12A and G12I substitutions and its structural effect upon both the nucleotide base and phosphate of A9. The latter involves the perturbation of a previously identified and well characterized metal ion-binding site known to be catalytically important in both minimal and full-length hammerhead ribozyme sequences. The results permit it to be suggested that G12 plays an important role in stabilizing the active-site structure. This result, although not inconsistent with the potential

  2. Zinc-dependent cleavage in the catalytic core of the hammerhead ribozyme: evidence for a pH-dependent conformational change

    OpenAIRE

    Borda, Emily J.; Markley, John C.; Sigurdsson, Snorri Th.

    2003-01-01

    We have characterized a novel Zn2+-catalyzed cleavage site between nucleotides C3 and U4 in the catalytic core of the hammerhead ribozyme. In contrast to previously described divalent metal-ion-dependent cleavage of RNA, U4 cleavage is only observed in the presence of Zn2+. This new cleavage site has an unusual pH dependence, in that U4 cleavage products are only observed above pH 7.9 and reach a maximum yield at about pH 8.5. These data, together with the fact that no metal ion-binding site ...

  3. Spiegelzymes® mirror-image hammerhead ribozymes and mirror-image DNAzymes, an alternative to siRNAs and microRNAs to cleave mRNAs in vivo?

    Directory of Open Access Journals (Sweden)

    Eliza Wyszko

    Full Text Available With the discovery of small non-coding RNA (ncRNA molecules as regulators for cellular processes, it became intriguing to develop technologies by which these regulators can be applied in molecular biology and molecular medicine. The application of ncRNAs has significantly increased our knowledge about the regulation and functions of a number of proteins in the cell. It is surprising that similar successes in applying these small ncRNAs in biotechnology and molecular medicine have so far been very limited. The reasons for these observations may lie in the high complexity in which these RNA regulators function in the cells and problems with their delivery, stability and specificity. Recently, we have described mirror-image hammerhead ribozymes and DNAzymes (Spiegelzymes® which can sequence-specifically hydrolyse mirror-image nucleic acids, such as our mirror-image aptamers (Spiegelmers discovered earlier. In this paper, we show for the first time that Spiegelzymes are capable of recognising complementary enantiomeric substrates (D-nucleic acids, and that they efficiently hydrolyse them at submillimolar magnesium concentrations and at physiologically relevant conditions. The Spiegelzymes are very stable in human sera, and do not require any protein factors for their function. They have the additional advantages of being non-toxic and non-immunogenic. The Spiegelzymes can be used for RNA silencing and also as therapeutic and diagnostic tools in medicine. We performed extensive three-dimensional molecular modelling experiments with mirror-image hammerhead ribozymes and DNAzymes interacting with D-RNA targets. We propose a model in which L/D-double helix structures can be formed by natural Watson-Crick base pairs, but where the nucleosides of one of the two strands will occur in an anticlinal conformation. Interestingly enough, the duplexes (L-RNA/D-RNA and L-DNA/D-RNA in these models can show either right- or left-handedness. This is a very new

  4. The effect of structure in a long target RNA on ribozyme cleavage efficiency.

    OpenAIRE

    Campbell, T B; McDonald, C K; Hagen, M.

    1997-01-01

    Inhibition of gene expression by catalytic RNA (ribozymes) requires that ribozymes efficiently cleave specific sites within large target RNAs. However, the cleavage of long target RNAs by ribozymes is much less efficient than cleavage of short oligonucleotide substrates because of higher order structure in the long target RNA. To further study the effects of long target RNA structure on ribozyme cleavage efficiency, we determined the accessibility of seven hammerhead ribozyme cleavage sites i...

  5. Engineering a ribozyme cleavage-induced split fluorescent aptamer complementation assay

    OpenAIRE

    Ausländer, Simon; Fuchs, David; Hürlemann, Samuel; Ausländer, David; Fussenegger, Martin

    2016-01-01

    Hammerhead ribozymes are self-cleaving RNA molecules capable of regulating gene expression in living cells. Their cleavage performance is strongly influenced by intra-molecular loop–loop interactions, a feature not readily accessible through modern prediction algorithms. Ribozyme engineering and efficient implementation of ribozyme-based genetic switches requires detailed knowledge of individual self-cleavage performances. By rational design, we devised fluorescent aptamer-ribozyme RNA archit...

  6. Structure of an anti-HIV-1 hammerhead ribozyme complex with a 17-mer DNA substrate analog of HIV-1 gag RNA and a mechanism for the cleavage reaction: 750 MHz NMR and computer experiments

    Science.gov (United States)

    Ojha, R. P.; Dhingra, M. M.; Sarma, M. H.; Myer, Y. P.; Setlik, R. F.; Shibata, M.; Kazim, A. L.; Ornstein, R. L.; Rein, R.; Turner, C. J.; Sarma, R. H.

    1997-01-01

    The structure of an anti-HIV-1 ribozyme-DNA abortive substrate complex was investigated by 750 MHz NMR and computer modeling experiments. The ribozyme was a chimeric molecule with 30 residues-18 DNA nucleotides, and 12 RNA residues in the conserved core. The DNA substrate analog had 17 residues. The chimeric ribozyme and the DNA substrate formed a shortened ribozyme-abortive substrate complex of 47 nucleotides with two DNA stems (stems I and III) and a loop consisting of the conserved core residues. Circular dichroism spectra showed that the DNA stems assume A-family conformation at the NMR concentration and a temperature of 15 degrees C, contrary to the conventional wisdom that DNA duplexes in aqueous solution populate entirely in the B-form. It is proposed that the A-family RNA residues at the core expand the A-family initiated at the core into the DNA stems because of the large free energy requirement for the formation of A/B junctions. Assignments of the base H8/H6 protons and H1' of the 47 residues were made by a NOESY walk. In addition to the methyl groups of all T's, the imino resonances of stems I and III and AH2's were assigned from appropriate NOESY walks. The extracted NMR data along with available crystallographic data, were used to derive a structural model of the complex. Stems I and III of the final model displayed a remarkable similarity to the A form of DNA; in stem III, a GC base pair was found to be moving into the floor of the minor groove defined by flanking AT pairs; data suggest the formation of a buckled rhombic structure with the adjacent pair; in addition, the base pair at the interface of stem III and the loop region displayed deformed geometry. The loop with the catalytic core, and the immediate region of the stems displayed conformational multiplicity within the NMR time scale. A catalytic mechanism for ribozyme action based on the derived structure, and consistent with biochemical data in the literature, is proposed. The complex

  7. Ultrasensitive monitoring of ribozyme cleavage product using molecular-beacon-ligation system

    Institute of Scientific and Technical Information of China (English)

    MENG XiangXian; TANG ZhiWen; WANG KeMin; TAN WeiHong; YANG XiaoHai; LI Jun; GUO QiuPing

    2007-01-01

    This paper reports a new approach to detect ribozyme cleavage product based on the molecular- beacon-ligation system. The molecular beacon, designed in such a way that one-half of its loop is complementary to ribozyme cleavage product, is used to monitor ligation process of RNA/DNA complex in a homogeneous solution and to convert directly cleavage product information into fluorescence signal. The method need not label ribozyme and ribozyme substrate, which is fast, simple and ultrasensitive for detection of cleavage product. Detection limit of the assay is 0.05 nmol/L. The cleavage product of hammerhead ribozyme against hepatitis C virus RNA (HCV-RNA) was detected perfectly based on this assay. Owing to its ultrasensitivity, excellent specificity, convenience and fidelity, this method might hold out great promise in ribozyme reaction and ribozyme gene therapy.

  8. 碱基切除修复基因HOGG1特异性锤头状核酶表达载体的构建及其功能的初步研究%Constructing the Eukaryotic Expression Vector to Study Preliminarily the Functions of Hammerhead Ribozyme Targeting Base Excision Repair Gene HOGG1

    Institute of Scientific and Technical Information of China (English)

    张遵真; 张勤; 吴媚

    2006-01-01

    Objective Adriamycin is widely used as an effective anti-tumor drug clinically treating a number of human cancers, but the effect of adriamycin is limited by drug resistance. The various kinds of investigations indicated that the anti-tumor activity of adriamycin resulted from drug-induced free radical formation. The free radicals could lead to oxidative DNA damage, and the lesion would be repaired by base excision repair (BER) pathway. Human 8-oxoguanine DNA glycosylase 1 (HOGG1) is a key enzyme on BER pathway. To study the influence and biological mechanism of the HOGG1 to adriamycin drug-sensitivity, the eukaryotic expression vector with gene of hammerhead ribozyme targeting HOGG1 mRNA would be constructed and identified, and then the change of drug-sensitivity in lung cancer A549 cells would be investigated. Methods According to computer design, two specific restriction site BamHⅠ and EcoRⅠ were added to both ends of the ribozyme gene, then the modified ribozyme gene was synthesized and cloned into the eukaryotic expression vector pcDNA3.1(+). The positive recombinants were screened by ampicillin resistance, and plasmids were extracted from the positive recombinants and digested by BamH Ⅰ and EcoR Ⅰ, and then were analyzed by agarose gel electrophoresis and DNA sequencing. The recombinants were transiently transfected into A549 cells. The positive recombinants were identified by reverse transcription-polymerase chain reaction (RT-PCR) targeting to NEO gene, which was a neomycin resistance gene for selection of stable cell lines and only existed in vectors. The changes of HOGG1 mRNA in A549 cells were detected by RT-PCR. Then the cellular sensitivity to adriamycin was tested by comparison between untransfected cells and transfected cells by MTT assay. The adriamycin-induced DNA damage was investigated by comet assay or single cell gel electrophoresis (SCGE) between untransfected and transfected cells. Results The recombinants containing the ribozyme gene

  9. Design of a ribozyme targeting human telomerase reverse transcriptase and cloning of it's gene

    Institute of Scientific and Technical Information of China (English)

    Zhi-Ming Hap; Jin-Yan Luo; Jin Cheng; Quan-Yin Wang; Guang-Xiao Yang

    2003-01-01

    AIM: To design a hammerhead ribozyme targeting humantelomerase reverse transcriptase (hTERT) and clone it's genefor future use in the study of tumor gene therapy.METHODS: Using the software RNAstructure, the secondarystructure of hTERT mRNA was predicted and the cleavagesite of ribozyme was selected. A hammerhead ribozymetargeting this site was designed and bimolecular fold betweenthe ribozyme and hTERT was predicted. The DNA encodingthe ribozyme was synthesized and cloned into pGEMEX-1and the sequence of the ribozyme gene was confirmed byDNA sequencing.RESULTS: Triplet GUC at 1742 of hTERT mRNA was chosenas the cleavage site of the ribozyme. The designed ribozymewas comprised of 22nt catalytic core and 17nt flankingsequence. Computer-aided prediction suggested that theribozyme and hTERT mRNA could cofold into a properconformation. Endonuclease restriction and DNA sequencingconfirmed the correct insertion of the ribozyme gene intothe vector pGEMEX-1.CONCLUSION: This fundamental work of successfuldesigning and cloning of an anti-hTERT hammerheadribozyme has paved the way for further study of inhibitingtumor cell growth by cleaving hTERT mRNA with ribozyme.

  10. Hairpin Ribozyme Genes Curtail Alcohol Drinking: from Rational Design to in vivo Effects in the Rat.

    Science.gov (United States)

    Sapag, Amalia; Irrazábal, Thergiory; Lobos-González, Lorena; Muñoz-Brauning, Carlos R; Quintanilla, María Elena; Tampier, Lutske

    2016-07-12

    Ribozyme genes were designed to reduce voluntary alcohol drinking in a rat model of alcohol dependence. Acetaldehyde generated from alcohol in the liver is metabolized by the mitochondrial aldehyde dehydrogenase (ALDH2) such that diminishing ALDH2 activity leads to the aversive effects of blood acetaldehyde upon alcohol intake. A stepwise approach was followed to design genes encoding ribozymes targeted to the rat ALDH2 mRNA. In vitro studies of accessibility to oligonucleotides identified suitable target sites in the mRNA, one of which fulfilled hammerhead and hairpin ribozyme requirements (CGGUC). Ribozyme genes delivered in plasmid constructs were tested in rat cells in culture. While the hairpin ribozyme reduced ALDH2 activity 56% by cleavage and blockade (P < 0.0001), the hammerhead ribozyme elicited minor effects by blockade. The hairpin ribozyme was tested in vivo by adenoviral gene delivery to UChB alcohol drinker rats. Ethanol intake was curtailed 47% for 34 days (P < 0.0001), while blood acetaldehyde more than doubled upon ethanol administration and ALDH2 activity dropped 25% in liver homogenates, not affecting other ALDH isoforms. Thus, hairpin ribozymes targeted to 16 nt in the ALDH2 mRNA provide durable and specific effects in vivo, representing an improvement on previous work and encouraging development of gene therapy for alcoholism.

  11. Construction of Multi-ribozyme Expression System and Its Characterization of Cleavage on the MDR1/MRP1 Double Target Substrate in vitro

    Institute of Scientific and Technical Information of China (English)

    TIAN Sheng-li; ZHENG Suo; LIU Shi-de; ZHANG Jian-hua; XU Dong-ping; OHNUMA Takao

    2009-01-01

    To improve catalytic activity of ribozyme on its substrate,the multi-ribozyme expression system was designed and constructed from 20 cis-acting hammerhead ribozymes undergoing self-cleavage with 10 trans-acting hammerhead ribozymes inserted altematively regularly and the plasmid of pGEM-MDRI/MRPI used to transcribe the M DRI/MRPI(196/210) substrate containing double target sites was also constructed by DNA recombination.Endonuclease digestion analysis and DNA sequencing indicate all the recombinant plasmids were correct.The cleavage activities were evaluated for the multi-ribozyme expression system on the MDR1/MRP1 substrate in the cell free system.The results demonstrate that the cis-acting hammerhead ribozymes in the multi-ribozyme expression system were able to cleave themselves and the 72 nt of 196Rz and the 71 nt of 210Rz trans-acting hammerhead ribozymes were liberated effectively,and the trans-acting hammerhead ribozymes released were able to act on the MDR1/MRP1 double target RNA substrate and cleave the target RNA at specific sites effectively.The multiribozyme expression system of the [Coat'A196Rz/Coat'B210Rz]5 is more significantly superior to that of the [Coat'A 196Rz/Coat'B210Rz]1 in cleavage of RNA substrate.The fractions cleaved by [Coat'A196Rz/Coat'B210Rz]5 on the MDR1/MRP1 substrate for 8 h at observed temperatures showed no marked difference.The studies of Mg2+ on cleavage efficiency indicate that cleavage reaction is dependent on Mg2+ ions concentration.The plot of Ig(kobs) vs.Igc(Mg2+) displays a linear relationship between 2.5 mmol/L and 20 mmol/L Mg2..It suggests that Mg2+ ions play a crucial role in multi-ribozyme cleavage on the substrate.

  12. Ribozyme-mediated reversal of the multidrug-resistant phenotype.

    OpenAIRE

    Scanlon, K J; Ishida, H.; Kashani-Sabet, M

    1994-01-01

    This study examined the effects of suppressing c-fos oncogene expression on multidrug resistance (MDR). A2780S human ovarian carcinoma cells with resistance to actinomycin D were isolated and the resultant A2780AD cells exhibited the MDR phenotype. A hammerhead ribozyme designed to cleave fos RNA cloned into the pMAMneo plasmid was transfected into A2780AD cells. Induction of the ribozyme resulted in decreased expression of c-fos, as well as that of the MDR gene (mdr-1), c-jun, and mutant p53...

  13. Group I intron ribozymes

    DEFF Research Database (Denmark)

    Nielsen, Henrik

    2012-01-01

    Group I intron ribozymes constitute one of the main classes of ribozymes and have been a particularly important model in the discovery of key concepts in RNA biology as well as in the development of new methods. Compared to other ribozyme classes, group I intron ribozymes display considerable...

  14. Is your ribozyme design really correct?: A proposal of simple single turnover competition assay to evaluate ribozymes.

    Science.gov (United States)

    Tanaka, T; Inui, O; Dohi, N; Okada, N; Okada, H; Kikuchi, Y

    2001-07-01

    Today, many nucleic acid enzymes are used in gene therapy and gene regulations. However, no simple assay methods to evaluate enzymatic activities, with which we judge the enzyme design, have been reported. Here, we propose a new simple competition assay for nucleic acid enzymes of different types to evaluate the cleaving efficiency of a target RNA molecule, of which the recognition sites are different but overlapped. Two nucleic acid enzymes were added to one tube to make a competition of these two enzymes for one substrate. The assay was used on two ribozymes, hammerhead ribozyme and hairpin ribozyme, and a DNA-enzyme. We found that this assay method is capable of application to those enzymes, as a powerful tool for the selection and designing of RNA-cleaving enzymes.

  15. Kinetics of hairpin ribozyme cleavage in yeast.

    OpenAIRE

    Donahue, C P; Fedor, M J

    1997-01-01

    Hairpin ribozymes catalyze a self-cleavage reaction that provides a simple model for quantitative analyses of intracellular mechanisms of RNA catalysis. Decay rates of chimeric mRNAs containing self-cleaving ribozymes give a direct measure of intracellular cleavage kinetics in yeast. Intracellular ribozyme-mediated cleavage occurs at similar rates and shows similar inhibition by ribozyme mutations as ribozyme-mediated reactions in vitro, but only when ribozymes are located in a favorable mRNA...

  16. Ribozyme-based aminoglycoside switches of gene expression engineered by genetic selection in S. cerevisiae.

    Science.gov (United States)

    Klauser, Benedikt; Atanasov, Janina; Siewert, Lena K; Hartig, Jörg S

    2015-05-15

    Systems for conditional gene expression are powerful tools in basic research as well as in biotechnology. For future applications, it is of great importance to engineer orthogonal genetic switches that function reliably in diverse contexts. RNA-based switches have the advantage that effector molecules interact immediately with regulatory modules inserted into the target RNAs, getting rid of the need of transcription factors usually mediating genetic control. Artificial riboswitches are characterized by their simplicity and small size accompanied by a high degree of modularity. We have recently reported a series of hammerhead ribozyme-based artificial riboswitches that allow for post-transcriptional regulation of gene expression via switching mRNA, tRNA, or rRNA functions. A more widespread application was so far hampered by moderate switching performances and a limited set of effector molecules available. Here, we report the re-engineering of hammerhead ribozymes in order to respond efficiently to aminoglycoside antibiotics. We first established an in vivo selection protocol in Saccharomyces cerevisiae that enabled us to search large sequence spaces for optimized switches. We then envisioned and characterized a novel strategy of attaching the aptamer to the ribozyme catalytic core, increasing the design options for rendering the ribozyme ligand-dependent. These innovations enabled the development of neomycin-dependent RNA modules that switch gene expression up to 25-fold. The presented aminoglycoside-responsive riboswitches belong to the best-performing RNA-based genetic regulators reported so far. The developed in vivo selection protocol should allow for sampling of large sequence spaces for engineering of further optimized riboswitches. PMID:24871672

  17. Inhibition of telomerase in tumor cells by ribozyme targeting telomerase RNA component

    Institute of Scientific and Technical Information of China (English)

    LIU; Bailin(刘柏林); QU; Yi(屈艺); LIU; Shuqiu(刘菽秋); OUYANG; Xuesong(欧阳雪松)

    2002-01-01

    Telomerase plays an important role in cell proliferation and carcinogenesis and is believed to be a good target for anti-cancer drugs. Elimination of template function of telomerase RNA may repress the telomerase activity. A hammer-headed ribozyme(telomerase ribozyme, teloRZ) directed against the RNA component of human telomerase(hTR) was designed and synthesized. TeloRZ showed a specific cleavage activity against the hTR. The cleavage efficacy reached 60%. A eukaryotic expression plasmid containing teloRZ gene was inducted into HeLa cells by lipofectamine, the telomerase activity in HeLa cells expressing teloRZ decreased to one eighth of that in the control cells. The doubling time increased significantly and the apoptosis ratio was elevated with increasing population doublings(PDS). After 19-20 PDS 95% cells were apoptotic. To further investigate the effect of teloRZ on tumor growth, the eukaryotic expression plasmid containing teloRZ was injected into transplanted tumor of nude mouse. The teloRZ effectively inhibited the telomerase activity in transplanted tumor, promoted apoptosis of the transplanted tumor cells, and decreased the tumor size significantly. These results indicate that teloRZ can effectively inhibit telomerase activity and growth of tumor cells, and suggest the potential use of this ribozyme in anti-cancer therapy.

  18. Hidden ribozymes in eukaryotic genome sequence

    OpenAIRE

    Sean P Ryder

    2010-01-01

    The small self-cleaving ribozymes fold into complex tertiary structures to promote autocatalytic cleavage or ligation at a precise position within their sequence. Until recently, relatively few examples had been identified. Two papers now reveal that self-cleaving ribozymes are prevalent in eukaryotic genomes and, in some cases, might play a role in regulating gene expression.

  19. Effects of ribozyme targeting platelet-derived growth factor receptor β subunit gene on the proliferation and apoptosis of hepatic stellate cells in vitro

    Institute of Scientific and Technical Information of China (English)

    CHEN Yue-xiang; LU Cui-hua; XIE Wei-fen; ZHANG Xing-rong; ZHANG Zhong-bing; WEI Li-xin; JIN You-xin; GUO Ya-jun

    2005-01-01

    Background Activation and proliferation of hepatic stellate cells (HSC) is essentially involved in the development and progression of hepatic fibrosis. The most potent growth factor for HSC is platelet-derived growth factor receptor (PDGF) and PDGF receptor β subunit (PDGFR-β) is the predominant signal transduction pathyway of PDGF which is overexpressed in activated HSC. This study investigated the cleavage activity of hammerhead ribozyme targeting PDGFR-β mRNA in HSC and the effect on biological characteristics of HSC.Methods Expression vector of anti-PDGFR-β ribozyme was constructed and transfected into rat activated HSC with lipofectamin. The positive cell clones were gained by G418 selection. The expression of PDGFR-β, α-smooth muscle actin, and typeⅠand type Ⅲ collagen were detected by using Northern blot, Western blot and immunocytochemical staining, respectively. The cell proliferation was determined with MTT colorimetric assay. The cell apoptosis was analyzed by using flow cytometry, acridine orange fluorescence vital staining and transmission electron microscopy.Results The expression of PDGFR-β at mRNA and protein level was markedly reduced in ribozyme-transfected HSC by 49%-57% (P<0.05-0.01). The proliferation and α-smooth muscle actin expression of ribozyme-transfected HSC were significantly decreased (P<0.05-0.01), and the type Ⅰ and type Ⅲ collagen synthesis were also reduced (P<0.01). In addition, the proliferative response of ribozyme-transfected HSC to PDGF BB was significantly inhibited. Otherwise, the apoptotic cells were significantly increased in ribozyme-transfected HSC (P<0.01), and typical apoptotic cells could be found under transmission electron microscopy.Conclusions The anti-PDGFR-β ribozyme effectively cleaved the target RNA and significantly inhibited its expression, which blocked the signal transduction of PDGF at receptor level, inhibited HSC proliferation and collagen synthesis, and induced HSC apoptosis. These

  20. Ribozymes:an anti-viral agent

    Institute of Scientific and Technical Information of China (English)

    Asad U.Khan; Shahper N.Khan

    2008-01-01

    The discovery that RNA can act as an enzyme led Thomas Cech to win the Nobel Prize in Chemistry and led immediately to the next wave of attempts to find an effective RNA-based therapy.The tantalizing idea that RNA enzymes called trans-cleaving ribozymes enables them to act as potential antiviral and powerful tool for functional genomic studies.The efficacy of ribozyme function in a complex intracellular environment is depend-ent on the intracellular fate of the RNA that is being targeted.Recently,ribozymes have been used successfully to inhibit gene expression in a variety of biological systems in vitro and in vivo.Ribozyme has also been used successfully to combat many cases of viral infection,as clinical trial.Despite it needs to be investigated and explored as far as its structural and functional aspects are concern.In view of the significance of ribozyme in modern medicine,we reviewed the recent literature on general approach to control viral infection.

  1. Chemical fidelity of an RNA polymerase ribozyme

    DEFF Research Database (Denmark)

    Attwater, J.; Tagami, S.; Kimoto, M.;

    2013-01-01

    The emergence of catalytically active RNA enzymes (ribozymes) is widely believed to have been an important transition in the origin of life. In the context of a likely heterogeneous chemical environment, substrate specificity and selectivity of these primordial enzymes would have been critical...... for function. Here we have explored the chemical fidelity, i.e. substrate selectivity and specificity for both single and multiple catalytic steps of the Z RNA polymerase ribozyme-a modern day analogue of the primordial RNA replicase. Using a wide range of nucleotide analogues and ionic conditions, we observe...

  2. Helium ion beam induced growth of hammerhead AFM probes

    NARCIS (Netherlands)

    Nanda, G.; Van Veldhoven, E.; Maas, D.; Sadeghian, H.; Alkemade, P.F.A.

    2015-01-01

    The authors report the direct-write growth of hammerhead atomic force microscope(AFM) probes by He+beam induced deposition of platinum-carbon. In order to grow a thin nanoneedle on top of a conventional AFM probe, the authors move a focused He+beam during exposure to a PtC precursor gas. In the fina

  3. Helium ion beam induced growth of hammerhead AFM probes

    NARCIS (Netherlands)

    Nanda, G.; Veldhoven, E. van; Maas, D.J.; Sadeghian Marnani, H.; Alkemade, P.F.A.

    2015-01-01

    The authors report the direct-write growth of hammerhead atomic force microscope (AFM) probes by He+ beam induced deposition of platinum-carbon. In order to grow a thin nanoneedle on top of a conventional AFM probe, the authors move a focused He+ beam during exposure to a PtC precursor gas. In the f

  4. 78 FR 24701 - Endangered and Threatened Wildlife; 90-Day Finding on Petitions To List the Great Hammerhead...

    Science.gov (United States)

    2013-04-26

    ... hammerhead shark is considered to be a candidate species (69 FR 19975; April 15, 2004). Within 12 months of... fisheries; (6) data on the trade of great hammerhead shark products, including fins, jaws, meat, and teeth... Threatened Wildlife; 90-Day Finding on Petitions To List the Great Hammerhead Shark as Threatened...

  5. Molecular characterization of a new member of the lariat capping twin-ribozyme introns

    DEFF Research Database (Denmark)

    Tang, Yunjia; Nielsen, Henrik; Masquida, Benoît;

    2014-01-01

    BACKGROUND: Twin-ribozyme introns represent a complex class of mobile group I introns that harbour a lariat capping (LC) ribozyme and a homing endonuclease gene embedded in a conventional self-splicing group I ribozyme (GIR2). Twin-ribozyme introns have so far been confined to nucleolar DNA...... an efficient self-cleaving ribozyme that generates a small 2',5' lariat cap at the 5' end of the homing endonuclease mRNA, and thus contributes to intron mobility. CONCLUSIONS: The discovery of a twin-ribozyme intron in a member of Heterolobosea expands the distribution pattern of LC ribozymes. We identify...

  6. MM 99.58 Physical modelling of Hammerhead forging, Vertical and Lateral load history

    DEFF Research Database (Denmark)

    Arentoft, Mogens; Eriksen, Morten; Wanheim, Tarras;

    1999-01-01

    The present report presents a laboratory setup with hammerhead forging, where the vertical and lateral force history is obtained under different process conditions......The present report presents a laboratory setup with hammerhead forging, where the vertical and lateral force history is obtained under different process conditions...

  7. 76 FR 23794 - Stock Status Determination for Atlantic Highly Migratory Scalloped Hammerhead Shark

    Science.gov (United States)

    2011-04-28

    ... Scalloped Hammerhead Shark AGENCY: National Marine Fisheries Service (NMFS), National Oceanic and... an Atlantic highly migratory species (HMS) scalloped hammerhead shark, and the stock is overfished... sharks in U.S. waters. Based on this paper, in 2005, the population was estimated to be at 45 percent...

  8. Biochemical analysis of hatchet self-cleaving ribozymes.

    Science.gov (United States)

    Li, Sanshu; Lünse, Christina E; Harris, Kimberly A; Breaker, Ronald R

    2015-11-01

    Hatchet RNAs are members of a novel self-cleaving ribozyme class that was recently discovered by using a bioinformatics search strategy. The consensus sequence and secondary structure of this class includes 13 highly conserved and numerous other modestly conserved nucleotides interspersed among bulges linking four base-paired substructures. A representative hatchet ribozyme from a metagenomic source requires divalent ions such as Mg(2+) to promote RNA strand scission with a maximum rate constant of ∼4 min(-1). As with all other small self-cleaving ribozymes discovered to date, hatchet ribozymes employ a general mechanism for catalysis involving the nucleophilic attack of a ribose 2'-oxygen atom on an adjacent phosphorus center. Kinetic characteristics of the reaction demonstrate that members of this ribozyme class have an essential requirement for divalent metal ions and that they might have a complex active site that employs multiple catalytic strategies to accelerate RNA cleavage by internal phosphoester transfer.

  9. Molecular modelling of the GIR1 branching ribozyme gives new insight into evolution of structurally related ribozymes

    DEFF Research Database (Denmark)

    Beckert, Bertrand Dominique; Nielsen, Henrik; Einvik, Christer;

    2008-01-01

    related to group I ribozymes raising the question about how two closely related ribozymes can carry out very different reactions. Modelling of GIR1 based on new biochemical and mutational data shows an extended substrate domain containing a GoU pair distinct from the nucleophilic residue that dock onto...

  10. Electroreception in juvenile scalloped hammerhead and sandbar sharks.

    Science.gov (United States)

    Kajiura, Stephen M; Holland, Kim N

    2002-12-01

    The unique head morphology of sphyrnid sharks might have evolved to enhance electrosensory capabilities. The 'enhanced electroreception' hypothesis was tested by comparing the behavioral responses of similarly sized carcharhinid and sphyrnid sharks to prey-simulating electric stimuli. Juvenile scalloped hammerhead sharks Sphyrna lewini and sandbar sharks Carcharhinus plumbeus oriented to dipole electric fields from the same maximum distance (approximately 30 cm) and thus demonstrated comparable behavioral-response thresholds (shark bent its trunk to orient to the center of the dipole. By contrast, sandbars swam in a broader arc towards the center of the dipole. The different orientation patterns are attributed to the hydrodynamic properties of the cephalofoil, which enables the hammerheads to execute sharp turns at high speed. The greater trunk width of the sandbar sharks prevented them from demonstrating the same degree of flexibility. Therefore, although the sphyrnid head morphology does not appear to confer a greater sensitivity to prey-simulating dipole electric fields, it does provide (1). a greater lateral search area, which may increase the probability of prey encounter, and (2). enhanced maneuverability, which may aid in prey capture. PMID:12409487

  11. Twister ribozymes as highly versatile expression platforms for artificial riboswitches

    Science.gov (United States)

    Felletti, Michele; Stifel, Julia; Wurmthaler, Lena A.; Geiger, Sophie; Hartig, Jörg S.

    2016-01-01

    The utilization of ribozyme-based synthetic switches in biotechnology has many advantages such as an increased robustness due to in cis regulation, small coding space and a high degree of modularity. The report of small endonucleolytic twister ribozymes provides new opportunities for the development of advanced tools for engineering synthetic genetic switches. Here we show that the twister ribozyme is distinguished as an outstandingly flexible expression platform, which in conjugation with three different aptamer domains, enables the construction of many different one- and two-input regulators of gene expression in both bacteria and yeast. Besides important implications in biotechnology and synthetic biology, the observed versatility in artificial genetic control set-ups hints at possible natural roles of this widespread ribozyme class. PMID:27670347

  12. Kinetic framework for ligation by an efficient RNA ligase ribozyme.

    Science.gov (United States)

    Bergman, N H; Johnston, W K; Bartel, D P

    2000-03-21

    The class I RNA ligase ribozyme, isolated previously from random sequences, performs an efficient RNA ligation reaction. It ligates two substrate RNAs, promoting the attack of the 3'-hydroxyl of one substrate upon the 5'-triphosphate of the other substrate with release of pyrophosphate. This ligation reaction has similarities to the reaction catalyzed by RNA polymerases. Using data from steady-state kinetic measurements and pulse-chase/pH-jump experiments, we have constructed minimal kinetic frameworks for two versions of the class I ligase, named 207t and 210t. For both ligases, as well as for the self-ligating parent ribozyme, the rate constant for the chemical step (k(c)) is log-linear with pH in the range 5.7-8.0. At physiological pH, the k(c) is 100 min(-1), a value similar to those reported for the fastest naturally occurring ribozymes. At higher pH, product release is limiting for both 207t and 210t. The 210t ribozyme, with its faster product release, attains multiple-turnover rates (k(cat) = 360 min(-1), pH 9.0) exceeding those of 207t and other reported ribozyme reactions. The kinetic framework for the 210t ribozyme describes the limits of this catalysis and suggests how key steps can be targeted for improvement using design or combinatorial approaches. PMID:10715133

  13. Constructional morphology within the head of hammerhead sharks (sphyrnidae).

    Science.gov (United States)

    Mara, Kyle R; Motta, Philip J; Martin, Andrew P; Hueter, Robert E

    2015-05-01

    The study of functional trade-offs is important if a structure, such as the cranium, serves multiple biological roles, and is, therefore, shaped by multiple selective pressures. The sphyrnid cephalofoil presents an excellent model for investigating potential trade-offs among sensory, neural, and feeding structures. In this study, hammerhead shark species were chosen to represent differences in head form through phylogeny. A combination of surface-based geometric morphometrics, computed tomography (CT) volumetric analysis, and phylogenetic analyses were utilized to investigate potential trade-offs within the head. Hammerhead sharks display a diversity of cranial morphologies where the position of the eyes and nares vary among species, with only minor changes in shape, position, and volume of the feeding apparatus through phylogeny. The basal winghead shark, Eusphyra blochii, has small anteriorly positioned eyes. Through phylogeny, the relative size and position of the eyes change, such that derived species have larger, more medially positioned eyes. The lateral position of the external nares is highly variable, showing no phylogenetic trend. Mouth size and position are conserved, remaining relatively unchanged. Volumetric CT analyses reveal no trade-offs between the feeding apparatus and the remaining cranial structures. The few trade-offs were isolated to the nasal capsule volume's inverse correlation with braincase, chondrocranial, and total cephalofoil volume. Eye volume also decreased as cephalofoil width increased. These data indicate that despite considerable changes in head shape, much of the head is morphologically conserved through sphyrnid phylogeny, particularly the jaw cartilages and their associated feeding muscles, with shape change and morphological trade-offs being primarily confined to the lateral wings of the cephalofoil and their associated sensory structures. PMID:25684106

  14. Biochemical analysis of pistol self-cleaving ribozymes.

    Science.gov (United States)

    Harris, Kimberly A; Lünse, Christina E; Li, Sanshu; Brewer, Kenneth I; Breaker, Ronald R

    2015-11-01

    Pistol RNAs are members of a distinct class of self-cleaving ribozymes that was recently discovered by using a bioinformatics search strategy. Several hundred pistol ribozymes share a consensus sequence including 10 highly conserved nucleotides and many other modestly conserved nucleotides associated with specific secondary structure features, including three base-paired stems and a pseudoknot. A representative pistol ribozyme from the bacterium Lysinibacillus sphaericus was found to promote RNA strand scission with a rate constant of ∼10 min(-1) under physiological Mg(2+) and pH conditions. The reaction proceeds via the nucleophilic attack of a 2'-oxygen atom on the adjacent phosphorus center, and thus adheres to the same general catalytic mechanism of internal phosphoester transfer as found with all other classes of natural self-cleaving ribozymes discovered to date. Analyses of the kinetic characteristics and the metal ion requirements of the cleavage reaction reveal that members of this ribozyme class likely use several catalytic strategies to promote the rapid cleavage of RNA.

  15. Speciation of a group I intron into a lariat capping ribozyme

    DEFF Research Database (Denmark)

    Meyer, Mélanie; Nielsen, Henrik; Oliéric, Vincent;

    2014-01-01

    The lariat-capping (LC) ribozyme is a natural ribozyme isolated from eukaryotic microorganisms. Despite apparent structural similarity to group I introns, the LC ribozyme catalyzes cleavage by a 2',5' branching reaction, leaving the 3' product with a 3-nt lariat cap that functionally substitutes...... for a conventional mRNA cap in the downstream pre-mRNA encoding a homing endonuclease. We describe the crystal structures of the precleavage and postcleavage LC ribozymes, which suggest that structural features inherited from group I ribozymes have undergone speciation due to profound changes in molecular selection...

  16. The Structural Basis of Ribozyme-Catalyzed RNA Assembly

    Energy Technology Data Exchange (ETDEWEB)

    Robertson, M.P.; Scott, W.G.; /UC, Santa Cruz

    2007-07-12

    Life originated, according to the RNA World hypothesis, from self-replicating ribozymes that catalyzed ligation of RNA fragments. We have solved the 2.6 angstrom crystal structure of a ligase ribozyme that catalyzes regiospecific formation of a 5' to 3' phosphodiester bond between the 5'-triphosphate and the 3'-hydroxyl termini of two RNA fragments. Invariant residues form tertiary contacts that stabilize a flexible stem of the ribozyme at the ligation site, where an essential magnesium ion coordinates three phosphates. The structure of the active site permits us to suggest how transition-state stabilization and a general base may catalyze the ligation reaction required for prebiotic RNA assembly.

  17. Kinetic partitioning mechanism of HDV ribozyme folding

    Energy Technology Data Exchange (ETDEWEB)

    Chen, Jiawen; Gong, Sha; Wang, Yujie; Zhang, Wenbing, E-mail: wbzhang@whu.edu.cn [Department of Physics, Wuhan University, Wuhan, Hubei 430072 (China)

    2014-01-14

    RNA folding kinetics is directly tied to RNA biological functions. We introduce here a new approach for predicting the folding kinetics of RNA secondary structure with pseudoknots. This approach is based on our previous established helix-based method for predicting the folding kinetics of RNA secondary structure. In this approach, the transition rates for an elementary step: (1) formation, (2) disruption of a helix stem, and (3) helix formation with concomitant partial melting of an incompatible helix, are calculated with the free energy landscape. The folding kinetics of the Hepatitis delta virus (HDV) ribozyme and the mutated sequences are studied with this method. The folding pathways are identified by recursive searching the states with high net flux-in(out) population starting from the native state. The theory results are in good agreement with that of the experiments. The results indicate that the bi-phasic folding kinetics for the wt HDV sequence is ascribed to the kinetic partitioning mechanism: Part of the population will quickly fold to the native state along the fast pathway, while another part of the population will fold along the slow pathway, in which the population is trapped in a non-native state. Single mutation not only changes the folding rate but also the folding pathway.

  18. Cleavage of highly structured viral RNA molecules by combinatorial libraries of hairpin ribozymes. The most effective ribozymes are not predicted by substrate selection rules.

    Science.gov (United States)

    Yu, Q; Pecchia, D B; Kingsley, S L; Heckman, J E; Burke, J M

    1998-09-01

    Combinatorial libraries of hairpin ribozymes representing all possible cleavage specificities (>10(5)) were used to evaluate all ribozyme cleavage sites within a large (4.2-kilobase) and highly structured viral mRNA, the 26 S subgenomic RNA of Sindbis virus. The combinatorial approach simultaneously accounts for target site structure and dynamics, together with ribozyme folding, and the sequences that result in a ribozyme-substrate complex with maximal activity. Primer extension was used to map and rank the relative activities of the ribozyme pool against individual sites and revealed two striking findings. First, only a small fraction of potential recognition sites are effectively cleaved (activity-selected sites). Second, nearly all of the most effectively cleaved sites deviated substantially from the established consensus selection rules for the hairpin ribozyme and were not predicted by examining the sequence, or through the use of computer-assisted predictions of RNA secondary structure. In vitro selection methods were used to isolate ribozymes with increased activity against substrates that deviate from the GUC consensus sequence. trans-Acting ribozymes targeting nine of the activity-selected sites were synthesized, together with ribozymes targeting four sites with a perfect match to the cleavage site consensus (sequence-selected sites). Activity-selected ribozymes have much higher cleavage activity against the long, structured RNA molecules than do sequence-selected ribozymes, although the latter are effective in cleaving oligoribonucleotides, as predicted. These results imply that, for Sindbis virus 26 S RNA, designing ribozymes based on matches to the consensus sequence may be an ineffective strategy. PMID:9722591

  19. Structural studies on an internal loop from a hairpin ribozyme

    Energy Technology Data Exchange (ETDEWEB)

    Cai, Z.; SantaLucia, J. Jr.; Tinoco, I. Jr. [Univ. of California, Berkeley, CA (United States)

    1994-12-01

    Ribozymes, RNA enzymes, catalyze site-specific RNA cleavage and ligation reactions. We are studying the three-dimensional structure of a hairpin ribozyme derived from the minus strand of tobacco ring spot virus satellite RNA ((-)sTRSV), which has been engineering to specifically cleave the HIV-1 RNA. The minimum structure for the catalytic reaction involves a 50-nucleotide ribozyme and a 14-nucleotide substrate. The proposed secondary structure of the ribozyme-substrate complex consists of four short helices separated by two internal loops. The relatively large size (64-nucleotide) of the ribozyme-substrate complex presents formidable problems in solving the structure using NMR. Therefore we are studying smaller structural subunits of the complex. We are determining the high resolution structure of the symmetric internal loop involving the cleavage site and the flanking helices. One strand of the internal loop was selectively {sup 13}C-labeled at C8 of each purine and C6 of each pyrimidine. By using {sup 13}C-edited two-dimensional NMR, the proton NOESY spectrum was greatly simplified. This allowed unambiguous sequential proton resonance assignments along each strand. Three-dimensional {sup 1}-{sup 13}C HMQC-NOESY was used to further facilitate resonance assignments. We are also enzymatically synthesizing the entire 50-nucleotide ribozyme and will combine it with the {sup 13}C-labeled substrate. Through comparison of the NOE connectivities of the labeled nucleotides from the internal loop alone with those from the entire complex, the differences between the two structures can be elucidated.

  20. Activity of HDV ribozymes to trans-cleave HCV RNA

    Institute of Scientific and Technical Information of China (English)

    Yue-Cheng Yu; Qing Mao; Chang-Hai Gu; Qi-Fen Li; Yu-Ming Wang

    2002-01-01

    AIM: To explore whether HDV ribozymes have the abilityto trans-cleave HCVRNA.METHODS: Three HDV genomic ribozymes weredesigned and named RzC1, RzC2 and RzC3. Thesubstrate RNA contained HCVRNA 5'-noncoding regionand 5'-fragment of C region (5'-NCR-C). All theribozymes and HCV RNA 5'-NCR-C were obtained bytranscription in vibo from their DNA templates, and HCVRNA 5'-NCR-C was radiolabelled at its 5'-end Undercertain pH, temperature, appropriate concentration ofMg2+ and deionized formamide, these ribozymes wererespectively or simultaneously mixed with HCVRNA 5'-NCR-C and reacted for a certain time. The trans-cleavage reaction was stopped at different time points,and the products were separated with polyacrylamidegel electrophoresis (PAGE), displayed byautoradiography. Percentage of trans-deaved productswas measured to indicate the activity of HDV ribozymes.RESULTS: RzC1 and RzC2 could trans-cleave 26 % and21.8 % of HCV RNA 5'-NCR-C under our reactionconditions with 2.5 mol. L-1 deionized formamiderespectively. The percentage of HCV RNA 5'-NCR-Ctrans-cleaved by RzC1, RzC2 or combined usage of thethree ribozymes increased with time, up to 24.9 %, 20.3 %and 37.3 % respectively at 90 min point. Almost noproduct from RzC3 was observed.CONCLUSION: HDV ribozymes are able to trans-cleavespecifically HCV RNA at certain sites under appropriateconditions, and combination of several ribozymesaiming at different target sites can trans-cleave thesubstrate more efficiently than using only one of them.

  1. Reconciling Ligase Ribozyme Activity with Fatty Acid Vesicle Stability

    OpenAIRE

    Fabrizio Anella; Christophe Danelon

    2014-01-01

    The “RNA world” and the “Lipid world” theories for the origin of cellular life are often considered incompatible due to the differences in the environmental conditions at which they can emerge. One obstacle resides in the conflicting requirements for divalent metal ions, in particular Mg2+, with respect to optimal ribozyme activity, fatty acid vesicle stability and protection against RNA strand cleavage. Here, we report on the activity of a short L1 ligase ribozyme in the presence of myristol...

  2. Kinematics and critical swimming speed of juvenile scalloped hammerhead sharks

    Science.gov (United States)

    Lowe

    1996-01-01

    Kinematics and critical swimming speed (Ucrit) of juvenile scalloped hammerhead sharks Sphyrna lewini were measured in a Brett-type flume (635 l). Kinematic parameters were also measured in sharks swimming in a large pond for comparison with those of sharks swimming in the flume. Sharks in the flume exhibited a mean Ucrit of 65±11 cm s-1 (± s.d.) or 1.17±0.21 body lengths per second (L s-1), which are similar to values for other species of sharks. In both the flume and pond, tailbeat frequency (TBF) and stride length (LS) increased linearly with increases in relative swimming speed (Urel=body lengths traveled per second). In the flume, tailbeat amplitude (TBA) decreased with increasing speed whereas TBA did not change with speed in the pond. Differences in TBF and LS between sharks swimming in the flume and the pond decreased with increases in Urel. Sharks swimming at slow speeds (e.g. 0.55 L s-1) in the pond had LS 19 % longer and TBF 21 % lower than sharks in the flume at the same Urel. This implies that sharks in the flume expended more energy while swimming at comparable velocities. Comparative measurements of swimming kinematics from sharks in the pond can be used to correct for effects of the flume on shark swimming kinematics and energetics. PMID:9320537

  3. Social organization of schools of the Scalloped Hammerhead shark, Sphyrna lewini (Griffith and Smith), in the Gulf of California

    OpenAIRE

    Klimley, A. Peter

    1983-01-01

    The social behavior of the scalloped hammerhead shark is described with an emphasis on determining the function of its polarized schooling. . This shark possesses a refuging social system in which individuals remain in groups in a small core of their home range during the inactive phase of their diel cycle and disperse into the surrounding environment during the active phase. Scalloped hammerhead sharks, followed by ultrasonic telemetry, swam slowly back and forth during the day along the rid...

  4. Reconciling Ligase Ribozyme Activity with Fatty Acid Vesicle Stability

    Directory of Open Access Journals (Sweden)

    Fabrizio Anella

    2014-12-01

    Full Text Available The “RNA world” and the “Lipid world” theories for the origin of cellular life are often considered incompatible due to the differences in the environmental conditions at which they can emerge. One obstacle resides in the conflicting requirements for divalent metal ions, in particular Mg2+, with respect to optimal ribozyme activity, fatty acid vesicle stability and protection against RNA strand cleavage. Here, we report on the activity of a short L1 ligase ribozyme in the presence of myristoleic acid (MA vesicles at varying concentrations of Mg2+. The ligation rate is significantly lower at low-Mg2+ conditions. However, the loss of activity is overcompensated by the increased stability of RNA leading to a larger amount of intact ligated substrate after long reaction periods. Combining RNA ligation assays with fatty acid vesicles we found that MA vesicles made of 5 mM amphiphile are stable and do not impair ligase ribozyme activity in the presence of approximately 2 mM Mg2+. These results provide a scenario in which catalytic RNA and primordial membrane assembly can coexist in the same environment.

  5. An mRNA is capped by a 2', 5' lariat catalyzed by a group I-like ribozyme

    DEFF Research Database (Denmark)

    Nielsen, Henrik; Westhof, Eric; Johansen, Steinar

    2005-01-01

    Twin-ribozyme introns are formed by two ribozymes belonging to the group I family and occur in some ribosomal RNA transcripts. The group I-like ribozyme, GIR1, liberates the 5' end of a homing endonuclease messenger RNA in the slime mold Didymium iridis. We demonstrate that this cleavage occurs...

  6. A natural fast-cleaving branching ribozyme from the amoeboflagellate Naegleria pringsheimi

    DEFF Research Database (Denmark)

    Tang, Yunjia; Nielsen, Henrik; Birgisdottir, Asa Birna;

    2011-01-01

    The GIR1 branching ribozyme constitutes a separate class of naturally occurring ribozymes. Most studies have been performed with the single GIR1 known from the myxomycete Didymium iridis whereas the large number of GIR1s found in the amoeboflagellate Naegleria has remained largely uncharacterized...

  7. Ribozyme probe based on molecular beacon for real time monitoring of enzymatic cleavage process

    Institute of Scientific and Technical Information of China (English)

    MENG Xiangxian; WANG Kemin; TAN Weihong; LI Jun; TANG Zhiwen; GUO Qiuping; HUANG Shasheng; LI Du

    2003-01-01

    Ribozyme probe based on molecular beacon (MBR) for monitoring enzymatic cleavage process in real time is designed and studied. The approach relies on ribozyme substrates modified at the two arms, with a fluorescent moiety attached to the end of one arm and a non-fluorescent quenching moiety attached to the end of the other arm. MBR is employed to directly convert the cleavage information into fluorescence signal in real time. Compared with traditional approach, this method provides a no-radiolabeling, sensitive and effective way to research on the ribozyme activity, enzymatic dynamic process and ribozyme function during gene therapy. The activity of the ribozyme against hepatitis C virus RNA (HCV-RNA) is studied based on this assay.

  8. Generation and Development of RNA Ligase Ribozymes with Modular Architecture Through “Design and Selection”

    Directory of Open Access Journals (Sweden)

    Yuki Fujita

    2010-08-01

    Full Text Available In vitro selection with long random RNA libraries has been used as a powerful method to generate novel functional RNAs, although it often requires laborious structural analysis of isolated RNA molecules. Rational RNA design is an attractive alternative to avoid this laborious step, but rational design of catalytic modules is still a challenging task. A hybrid strategy of in vitro selection and rational design has been proposed. With this strategy termed “design and selection,” new ribozymes can be generated through installation of catalytic modules onto RNA scaffolds with defined 3D structures. This approach, the concept of which was inspired by the modular architecture of naturally occurring ribozymes, allows prediction of the overall architectures of the resulting ribozymes, and the structural modularity of the resulting ribozymes allows modification of their structures and functions. In this review, we summarize the design, generation, properties, and engineering of four classes of ligase ribozyme generated by design and selection.

  9. Intracellular ribozyme-catalyzed trans-cleavage of RNA monitored by fluorescence resonance energy transfer.

    Science.gov (United States)

    Vitiello, D; Pecchia, D B; Burke, J M

    2000-04-01

    Small catalytic RNAs like the hairpin ribozyme are proving to be useful intracellular tools; however, most attempts to demonstrate trans-cleavage of RNA by ribozymes in cells have been frustrated by rapid cellular degradation of the cleavage products. Here, we describe a fluorescence resonance energy transfer (FRET) assay that directly monitors cleavage of target RNA in tissue-culture cells. An oligoribonucleotide substrate was modified to inhibit cellular ribonuclease degradation without interfering with ribozyme cleavage, and donor (fluorescein) and acceptor (tetramethylrhodamine) fluorophores were introduced at positions flanking the cleavage site. In simple buffers, the intact substrate produces a strong FRET signal that is lost upon cleavage, resulting in a red-to-green shift in dominant fluorescence emission. Hairpin ribozyme and fluorescent substrate were microinjected into murine fibroblasts under conditions in which substrate cleavage can occur only inside the cell. A strong FRET signal was observed by fluorescence microscopy when substrate was injected, but rapid decay of the FRET signal occurred when an active, cognate ribozyme was introduced with the substrate. No acceleration in cleavage rates was observed in control experiments utilizing a noncleavable substrate, inactive ribozyme, or an active ribozyme with altered substrate specificity. Subsequently, the fluorescent substrates were injected into clonal cell lines that expressed cognate or noncognate ribozymes. A decrease in FRET signal was observed only when substrate was microinjected into cells expressing its cognate ribozyme. These results demonstrate trans-cleavage of RNA within mammalian cells, and provide an experimental basis for quantitative analysis of ribozyme activity and specificity within the cell. PMID:10786853

  10. Age validation of great hammerhead shark (Sphyrna mokarran), determined by bomb radiocarbon analysis

    OpenAIRE

    Passerotti, Michelle S.; John K. Carlson; Piercy, Andrew N.; Campana, Steven E.

    2010-01-01

    Preliminary validation of annual growth band deposition in vertebrae of great hammerhead shark (Sphyrna mokarran) was conducted by using bomb radiocarbon analysis. Adult specimens (n=2) were collected and thin sections of vertebral centra were removed for visual aging and use in radiocarbon assays. Vertebral band counts were used to estimate age, and year of formation was assigned to each growth band by subtracting estimated age from the year of capture. A total of 10 samples were extra...

  11. Effects of fasting and refeeding on intestinal cell proliferation and apoptosis in hammerhead shark (Sphyrna lewini)

    OpenAIRE

    Hideya Takahashi; Susumu Hyodo; Tsukasa Abe; Chiyo Takagi; Grau, Gordon E.; Tatsuya Sakamoto

    2014-01-01

    Objective: To examine the effects of fasting and refeeding on intestinal cell proliferation and apoptosis in an opportunistic predator, hammerhead shark (Sphyrna lewini) of elasmobranch fishes which are among the earliest known extant groups of vertebrates to have the valvular intestine typical for the primitive species. Methods: Animals were euthanized after 5-10 d of fasting or feeding, or after 10-day fasting and 5-day refeeding. Intestinal apoptosis and cell proliferation w...

  12. The Hydrodynamics and Odorant Transport Phenomena of Olfaction in the Hammerhead Shark

    Science.gov (United States)

    Rygg, Alex; Craven, Brent

    2013-11-01

    The hammerhead shark possesses a unique head morphology that is thought to facilitate enhanced olfactory performance. The olfactory organs, located at the distal ends of the cephalofoil, contain numerous lamellae that increase the surface area for olfaction. Functionally, for the shark to detect chemical stimuli, water-borne odors must reach the olfactory sensory epithelium that lines these lamellae. Thus, odorant transport from the aquatic environment to the sensory epithelium is the first critical step in olfaction. Here we investigate the hydrodynamics and odorant transport phenomena of olfaction in the hammerhead shark based on an anatomically-accurate reconstruction of the head and olfactory chamber from high-resolution micro-CT and MRI scans of a cadaver specimen. Computational fluid dynamics (CFD) simulations of water flow in the reconstructed model reveal the external and internal hydrodynamics of olfaction during swimming. Odorant transport in the olfactory organ is investigated using a multi-scale approach, whereby molecular dynamics (MD) simulations are used to calculate odorant partition coefficients that are subsequently utilized in macro-scale CFD simulations of odorant deposition. The hydrodynamic and odorant transport results are used to elucidate several important features of olfactory function in the hammerhead shark.

  13. Design principles for ligand-sensing, conformation-switching ribozymes.

    Directory of Open Access Journals (Sweden)

    Xi Chen

    2009-12-01

    Full Text Available Nucleic acid sensor elements are proving increasingly useful in biotechnology and biomedical applications. A number of ligand-sensing, conformational-switching ribozymes (also known as allosteric ribozymes or aptazymes have been generated by some combination of directed evolution or rational design. Such sensor elements typically fuse a molecular recognition domain (aptamer with a catalytic signal generator (ribozyme. Although the rational design of aptazymes has begun to be explored, the relationships between the thermodynamics of aptazyme conformational changes and aptazyme performance in vitro and in vivo have not been examined in a quantitative framework. We have therefore developed a quantitative and predictive model for aptazymes as biosensors in vitro and as riboswitches in vivo. In the process, we have identified key relationships (or dimensionless parameters that dictate aptazyme performance, and in consequence, established equations for precisely engineering aptazyme function. In particular, our analysis quantifies the intrinsic trade-off between ligand sensitivity and the dynamic range of activity. We were also able to determine how in vivo parameters, such as mRNA degradation rates, impact the design and function of aptazymes when used as riboswitches. Using this theoretical framework we were able to achieve quantitative agreement between our models and published data. In consequence, we are able to suggest experimental guidelines for quantitatively predicting the performance of aptazyme-based riboswitches. By identifying factors that limit the performance of previously published systems we were able to generate immediately testable hypotheses for their improvement. The robust theoretical framework and identified optimization parameters should now enable the precision design of aptazymes for biotechnological and clinical applications.

  14. In vitro evolution of coenzyme-independent variants from the glmS ribozyme structural scaffold.

    Science.gov (United States)

    Lau, Matthew W L; Ferré-D'Amaré, Adrian R

    2016-08-15

    Uniquely among known natural ribozymes that cleave RNA sequence-specifically, the glmS ribozyme-riboswitch employs a small molecule, glucosamine-6-phosphate (GlcN6P) as a catalytic cofactor. In vitro selection was employed to search for coenzyme-independent variants of this ribozyme. In addition to shedding light on the catalytic mechanism of the ribozyme, such variants could resemble the evolutionary ancestors of the modern, GlcN6P-regulated ribozyme-riboswitch. A mutant pool was constructed such that the secondary structure elements, which define the triply-pseudoknotted global fold of the ribozyme, was preserved. A stringent selection scheme that relies on thiol-mercury affinity chromatography for separating active and inactive sequences ultimately yielded a triple mutant with a cleavage rate exceeding 3min(-1) that only requires divalent cations for activity. Mutational analysis demonstrated that a point reversion of the variant toward the wild-type sequence was sufficient to partially restore GlcN6P-dependence, suggesting that coenzyme dependence can be readily be acquired by RNAs that adopt the glmS ribozyme fold. The methods employed to perform this selection experiment are described in detail in this review. PMID:27130889

  15. 气动矛系统性能仿真分析%The Simulation Analysis on Performance of Hammerhead Mole

    Institute of Scientific and Technical Information of China (English)

    于晓琳; 闫明印

    2011-01-01

    The structure and working principles of hammerhead mole system were analyzed, and the simulation computation was made by MATLAB based on the dynamic simulation model of working hammerhead mole system. The factors affecting the performance of hammerhead mole were analyzed, and the relationship between affecting factors and performance parameters was studied. The results can be a reference to the design of hammerhead mole.%分析气动矛系统的结构及工作原理,在建立气动矛系统工作状态下动力学仿真数学模型的基础上,利用MATLAB软件对Hammerhead12”型气动矛进行仿真,并对影响气动矛系统性能的各因素进行仿真分析,研究气动矛性能与各影响因素的关系.分析和研究结果可为气动矛的设计提供参考.

  16. 二价核酶基因构建及对PLRV负链靶序列的体外切割研究%Construction of a Divalent Ribozyme Gene Specific to Potato Leafroll Virus Repelicase Gene and Cleavage of Negative Strand RNA in vitro by Ribozyme

    Institute of Scientific and Technical Information of China (English)

    张剑峰; 张鹤龄; 于嘉林; 迟胜起; 贺秀芳; 郝文胜; 杨静华

    2012-01-01

    根据锤头状核酶的作用模式,设计、合成并克隆了特异性切割马铃薯卷叶病毒(Potato leaf roll virus,PLRV)中国分离株(PLRV-Ch)复制酶基因负链RNA的二价核酶序列.将该核酶基因克隆到pGEM-4Z中,构建成体外转录载体pGEM-4ZDR;同时将包含核酶切割识别位点的PLRV-Ch复制酶基因cDNA近5’端的874 bp片段反向插入到pGEM-4Z中,构建了体外转录载体pGEM-4ZR5.以线性化的重组质粒pGEM-4ZDR和pGEM-4ZR5为模板,在T7 RNA聚合酶的作用下,分别转录获得核酶RNA和PLRV-Ch复制酶基因5′端负链RNA底物片段.将以上2种RNA转录物混合并经37℃保温后,检测结果表明,所得核酶RNA对PLRV-Ch复制酶基因负链RNA在体外具有较强的特异切割活性.%Based on the functional model of the hammerhead RNAs.a divalent ribozyme was designed for cleavage of Potato leafroll virus( PLRV) RNA, targeting at two sites on the negative strand of PLRV Chinese isolate repli-case gene and cloned in vector pGEM-4Z. The recotnbinant plasmid pGEM-4ZDR was useed for in vitro transcription of the ribozyme RNA. The plasmid pGEM-4ZR5 for in vitro transcription of the substrate viral RNA was synthesized by cDNA subcloning of a PLRV Chinese isolate( PLRV-Ch) into plasmid pGEM-4Z,in which an 874 bp cDNA fragment at the 5' end of PLRV-Ch replicase gene was reversely inserted downstream of the T7 promoter in pGEM-4Z. By using T7 DNA polymerase,the plasmids of pGEM-4ZDR and pGEM-4ZR5 were linearized with EcoR I and used as templates for in vitro transcription of the divalent ribozyme or the negative strand RNA of PLRV-Ch replicase gene, respectively. After mixture of the RNA transcripts and incubation at 37t .results showed that the ribozyme has highly catalytic activity to the PLRV-Ch negative strand RNA in vitro.

  17. Crystal Structure of the Catalytic Core of an RNA-Polymerase Ribozyme

    Energy Technology Data Exchange (ETDEWEB)

    Shechner, David M.; Grant, Robert A.; Bagby, Sarah C.; Koldobskaya, Yelena; Piccirilli, Joseph A.; Bartel, David P.; (MIT); (HHMI); (UC)

    2010-09-02

    Primordial organisms of the putative RNA world would have required polymerase ribozymes able to replicate RNA. Known ribozymes with polymerase activity best approximating that needed for RNA replication contain at their catalytic core the class I RNA ligase, an artificial ribozyme with a catalytic rate among the fastest of known ribozymes. Here we present the 3.0 angstrom crystal structure of this ligase. The architecture resembles a tripod, its three legs converging near the ligation junction. Interacting with this tripod scaffold through a series of 10 minor-groove interactions (including two A-minor triads) is the unpaired segment that contributes to and organizes the active site. A cytosine nucleobase and two backbone phosphates abut the ligation junction; their location suggests a model for catalysis resembling that of proteinaceous polymerases.

  18. An improved version of the hairpin ribozyme functions as a ribonucleoprotein complex.

    Science.gov (United States)

    Sargueil, B; Pecchia, D B; Burke, J M

    1995-06-13

    Most RNA molecules that are endowed with catalytic activity function in the form of ribonucleoproteins within cells. These complexes are frequently large, poorly defined, and difficult to study. As a model system to study biological catalysis by ribonucleoproteins, we have modified the hairpin ribozyme by inserting an RNA structure that serves as a binding site for bacteriophage R17 coat protein in the form of an extension to ribozyme helix 4, which lies at the periphery of the catalytic domain. In the absence of protein, we find that incorporation of the protein-binding domain increases the catalytic efficiency of the hairpin ribozyme by 2-fold for the cleavage reaction and 16-fold for the ligation reaction. This increase in activity correlates with an increase in the proportion of molecules which fold into the active tertiary structure, as measured by a UV cross-linking assay. Mobility-shift and filter-binding assays of complex formation show that R17 coat protein binds to the chimeric ribozyme with a dissociation constant essentially identical to that of the isolated protein-binding domain; no binding of the protein to the unmodified ribozyme could be detected. The kinetics of cleavage and ligation reactions are not altered by the presence of saturating concentrations of coat protein, and competition studies demonstrate that the protein remains bound to the ribozyme throughout the catalytic cycle. These studies establish that the hairpin ribozyme can be engineered to function efficiently in the form of a ribonucleoprotein in vitro and will serve as the basis for future experimentation to understand mechanisms of protein modulation of catalytic RNA activity, and to introduce other protein-binding domains, for example, HIV-1 rev-binding and tar elements, which may be useful for influencing subcellular localization, regulating intracellular activity, or generating ribozymes that also function as "decoys" in antiviral applications. PMID:7779820

  19. Intracellular ribozyme-catalyzed trans-cleavage of RNA monitored by fluorescence resonance energy transfer.

    OpenAIRE

    Vitiello, D; Pecchia, D B; Burke, J M

    2000-01-01

    Small catalytic RNAs like the hairpin ribozyme are proving to be useful intracellular tools; however, most attempts to demonstrate trans-cleavage of RNA by ribozymes in cells have been frustrated by rapid cellular degradation of the cleavage products. Here, we describe a fluorescence resonance energy transfer (FRET) assay that directly monitors cleavage of target RNA in tissue-culture cells. An oligoribonucleotide substrate was modified to inhibit cellular ribonuclease degradation without int...

  20. Putative intermediary stages for the molecular evolution from a ribozyme to a catalytic RNP

    OpenAIRE

    IKAWA, YOSHIYA; Tsuda, Kentaro; Matsumura, Shigeyoshi; Atsumi, Shota; Inoue, Tan

    2003-01-01

    A hypothetical evolutionary pathway from a ribozyme to a catalytic RNA–protein complex (RNP) is proposed and examined. In this hypothesis for an early phase of molecular evolution, one RNA–RNA interaction in the starting ribozyme is replaced with an RNA–protein interaction via two intermediary stages. At each stage, the original RNA–RNA interaction and a newly introduced RNA–protein interaction are designed to coexist. The catalytic RNPs corresponding to the intermediary stages were construct...

  1. A comprehensive study of ribozyme-mediated nucleotide and sugar chemistries

    OpenAIRE

    Lau, Matthew

    2009-01-01

    The ability of RNA catalysts (ribozymes) to synthesize nucleotides as basic building blocks for the assembly of larger RNA polymers is an important aspect of the 'RNA World' hypothesis. To examine the ability of RNAs to catalyze this chemistry, we performed an in vitro selection in my first project and successfully isolated ribozymes capable of synthesizing a purine nucleotide (6-thioguanosine, 6SG) from tethered 5-phosphoribosyl 1-pyrophosphate (PRPP) and 6-thioguanine (6SGua). Compared to t...

  2. Maternal offloading of organochlorine contaminants in the yolk-sac placental scalloped hammerhead shark (Sphyrna lewini).

    Science.gov (United States)

    Lyons, Kady; Adams, Douglas H

    2015-04-01

    Elasmobranchs are a group of animals that typically occupy upper trophic levels in food webs and have a propensity to accumulate high contaminant concentrations. To date, few studies have investigated maternal offloading processes in sharks, despite the fact that this process represents a substantial source of exposure for young sharks and is a significant pathway for contaminant redistribution within marine ecosystems. Comparable to mammalian systems, scalloped hammerhead sharks (Sphyrna lewini) utilize a yolk-sac placental strategy to nourish young in utero, which may allow females to transfer contaminants to young. Organic contaminants (PCBs and chlorinated pesticides) were measured in livers of both females and males from several age classes that were collected from U.S. Atlantic waters, including two near-term pregnant females and their embryos. Adult female hammerheads (n = 3) were found to have lower levels of PCBs compared to the younger, adult male (mean ± SD, 11.1 ± 1.0 vs. 22.8 μg g(-1) lw), but had substantially higher concentrations of pesticides (4.1 ± 0.9 vs. 1.9 μg g(-1) lw). Embryos from the two litters (n = 36) had similar levels of summed organic contaminant concentrations (4.6 ± 0.9 μg g(-1) lw) and pregnant females were estimated to offload approximately 0.03-2.3% of their hepatic contaminant load to offspring. While the potential health impacts of these transferred contaminants is unknown, this is the first study to demonstrate that scalloped hammerheads are exposed to a substantial amount of contaminants prior to birth and document maternal offloading of organochlorines in a pseudo-placental shark species. Therefore, future research should continue to investigate the potential adverse effects these contaminants have on elasmobranch physiology. PMID:25527298

  3. Maternal offloading of organochlorine contaminants in the yolk-sac placental scalloped hammerhead shark (Sphyrna lewini).

    Science.gov (United States)

    Lyons, Kady; Adams, Douglas H

    2015-04-01

    Elasmobranchs are a group of animals that typically occupy upper trophic levels in food webs and have a propensity to accumulate high contaminant concentrations. To date, few studies have investigated maternal offloading processes in sharks, despite the fact that this process represents a substantial source of exposure for young sharks and is a significant pathway for contaminant redistribution within marine ecosystems. Comparable to mammalian systems, scalloped hammerhead sharks (Sphyrna lewini) utilize a yolk-sac placental strategy to nourish young in utero, which may allow females to transfer contaminants to young. Organic contaminants (PCBs and chlorinated pesticides) were measured in livers of both females and males from several age classes that were collected from U.S. Atlantic waters, including two near-term pregnant females and their embryos. Adult female hammerheads (n = 3) were found to have lower levels of PCBs compared to the younger, adult male (mean ± SD, 11.1 ± 1.0 vs. 22.8 μg g(-1) lw), but had substantially higher concentrations of pesticides (4.1 ± 0.9 vs. 1.9 μg g(-1) lw). Embryos from the two litters (n = 36) had similar levels of summed organic contaminant concentrations (4.6 ± 0.9 μg g(-1) lw) and pregnant females were estimated to offload approximately 0.03-2.3% of their hepatic contaminant load to offspring. While the potential health impacts of these transferred contaminants is unknown, this is the first study to demonstrate that scalloped hammerheads are exposed to a substantial amount of contaminants prior to birth and document maternal offloading of organochlorines in a pseudo-placental shark species. Therefore, future research should continue to investigate the potential adverse effects these contaminants have on elasmobranch physiology.

  4. Cleavage of an amide bond by a ribozyme

    Science.gov (United States)

    Dai, X.; De Mesmaeker, A.; Joyce, G. F.; Miller, S. L. (Principal Investigator)

    1995-01-01

    A variant form of a group I ribozyme, optimized by in vitro evolution for its ability to catalyze magnesium-dependent phosphoester transfer reactions involving DNA substrates, also catalyzes the cleavage of an unactivated alkyl amide when that linkage is presented in the context of an oligodeoxynucleotide analog. Substrates containing an amide bond that joins either two DNA oligos, or a DNA oligo and a short peptide, are cleaved in a magnesium-dependent fashion to generate the expected products. The first-order rate constant, kcat, is 0.1 x 10(-5) min-1 to 1 x 10(-5) min-1 for the DNA-flanked substrates, which corresponds to a rate acceleration of more than 10(3) as compared with the uncatalyzed reaction.

  5. Vulnerability to longline fisheries of three hammerhead shark Sphyrna species in the south-western and equatorial Atlantic Ocean.

    Science.gov (United States)

    Bezerra, N P A; Travassos, P; Hazin, F H V

    2016-08-01

    Catch and effort data from 29 418 longline sets from Brazilian tuna longline vessels operating in the south-western and equatorial Atlantic Ocean between 2004 and 2011 were analysed to investigate the distribution, catch rate and size of three species of hammerhead sharks (Sphyrna lewini, Sphyrna mokarran and Sphyrna zygaena). During that period, 6172 hammerhead sharks were caught. Among the elasmobranchs, the highest percentage of hammerhead sharks were caught in 2007, when they accounted for 3·90% of the group, while the lowest value of 0·40% was recorded in 2010. In general, the spatial distribution of the mean catch per unit effort (CPUE) by years and quarters showed a trend of higher catches near the equatorial region and in southern Brazil. The nominal mean CPUE was 0·12 Sphyrna spp. 1000(-1) hooks, with the highest value being recorded in 2007 (0·30 Sphyrna spp. 1000(-1) hooks). The standardized yearly CPUE estimated by a generalized linear model assuming a zero inflated negative binomial (ZINB) distribution were not much different from nominal values. Of the 205 sexed specimens, 117 were females and 88 were males, resulting in a sex ratio with a predominance of females (1·30:1·00), although not statistically significant. The total length of females ranged from 1200 to 2800 mm and of males from 1100 to 3100 mm. Juvenile hammerhead sharks represented 82 and 54% of the sexed female and male specimens, respectively. PMID:27349350

  6. Conservation Genetics of the Scalloped Hammerhead Shark in the Pacific Coast of Colombia.

    Science.gov (United States)

    Quintanilla, Sonia; Gómez, Alberto; Mariño-Ramírez, Camila; Sorzano, Carolina; Bessudo, Sandra; Soler, German; Bernal, Jaime E; Caballero, Susana

    2015-01-01

    Previous investigations of the population genetics of the scalloped hammerhead sharks (Sphyrna lewini) in the Eastern Tropical Pacific have lacked information about nursery areas. Such areas are key to promoting conservation initiatives that can protect young sharks from threats such as overfishing. Here, we investigated the genetic diversity, phylogeography, and connectivity of S. lewini found in 3 areas of Colombia's Pacific coast: around Malpelo Island and in 2 National Natural Parks on the Colombian Pacific mainland (Sanquianga and Ensenada de Utría). We analyzed mtDNA control region (CR) sequences and genotyped 15 microsatellite loci in 137 samples of adults and juveniles. The mtDNA analyses showed haplotypes shared between the Colombian Pacific individuals sampled in this investigation and other areas in the Eastern Tropical Pacific, the Indo-Pacific, and with sequences previously reported in Colombia (Buenaventura Port), as well as 4 unique haplotypes. Population assignment and paternity analyses detected 3 parent-offspring pairs between Malpelo and Sanquianga and 1 between Malpelo and Utría. These results indicate high genetic connectivity between Malpelo Island and the Colombian Pacific coast, suggesting that these 2 areas are nurseries for S. lewini. This is, to our knowledge, the first evidence of nursery areas identified for the scalloped hammerhead shark anywhere in the world. Additional conservation planning may be required to protect these nursery habitats of this endangered shark species.

  7. Conservation Genetics of the Scalloped Hammerhead Shark in the Pacific Coast of Colombia.

    Science.gov (United States)

    Quintanilla, Sonia; Gómez, Alberto; Mariño-Ramírez, Camila; Sorzano, Carolina; Bessudo, Sandra; Soler, German; Bernal, Jaime E; Caballero, Susana

    2015-01-01

    Previous investigations of the population genetics of the scalloped hammerhead sharks (Sphyrna lewini) in the Eastern Tropical Pacific have lacked information about nursery areas. Such areas are key to promoting conservation initiatives that can protect young sharks from threats such as overfishing. Here, we investigated the genetic diversity, phylogeography, and connectivity of S. lewini found in 3 areas of Colombia's Pacific coast: around Malpelo Island and in 2 National Natural Parks on the Colombian Pacific mainland (Sanquianga and Ensenada de Utría). We analyzed mtDNA control region (CR) sequences and genotyped 15 microsatellite loci in 137 samples of adults and juveniles. The mtDNA analyses showed haplotypes shared between the Colombian Pacific individuals sampled in this investigation and other areas in the Eastern Tropical Pacific, the Indo-Pacific, and with sequences previously reported in Colombia (Buenaventura Port), as well as 4 unique haplotypes. Population assignment and paternity analyses detected 3 parent-offspring pairs between Malpelo and Sanquianga and 1 between Malpelo and Utría. These results indicate high genetic connectivity between Malpelo Island and the Colombian Pacific coast, suggesting that these 2 areas are nurseries for S. lewini. This is, to our knowledge, the first evidence of nursery areas identified for the scalloped hammerhead shark anywhere in the world. Additional conservation planning may be required to protect these nursery habitats of this endangered shark species. PMID:26245780

  8. The complement system of elasmobranches revealed by liver transcriptome analysis of a hammerhead shark, Sphyrna zygaena.

    Science.gov (United States)

    Goshima, Masayuki; Sekiguchi, Reo; Matsushita, Misao; Nonaka, Masaru

    2016-08-01

    Comprehensive studies of the complement genes in basal vertebrates have revealed that cyclostomes have apparently primitive complement systems whereas bony fish have well-developed complement systems comparable to those of mammals. Here we have performed liver transcriptome analysis of a hammerhead shark, Sphyrna zygaeana, to elucidate the early history of vertebrate complement evolution. Identified genes were; one C1qB, one C1r, one C1s, one MASP-1/-3, one MASP-2, two factor B/C2, one C3, three C4, one C5, one C6, one C7, one C8A, three C8B, one C8G, one C9, two factor I and one S protein. No MBL, ficolin, C1qA or C1qC were found. These results indicate that the lectin, classical, alternative and lytic pathways were established in the common ancestor of jawed vertebrates. In addition to the absence of MBL and ficolin, the MASP transcripts lacked the serine protease domain, suggesting that the lectin pathway was lost in the hammerhead shark lineage. PMID:26987526

  9. DiGIR1 and NaGIR1: naturally occurring group I-like ribozymes with unique core organization and evolved biological role

    DEFF Research Database (Denmark)

    Johansen, Steinar; Einvik, Christer; Nielsen, Henrik

    2002-01-01

    The group I-like ribozyme GIR1 is a unique example of a naturally occurring ribozyme with an evolved biological function. GIR1 generates the 5'-end of a nucleolar encoded messenger RNA involved in intron mobility. GIR1 is found as a cis-cleaving ribozyme within two very different rDNA group I int...

  10. Investigating single and multiple species fisheries management: stock status evaluation of hammerhead (Sphyrna spp.) sharks in the western North Atlantic Ocean and Gulf of Mexico.

    OpenAIRE

    Hayes, Christopher Glenn

    2007-01-01

    Three hammerhead sharks (Sphyrna spp.) are currently managed as part of the large coastal shark complex in the United States. Including multiple species in an assessment ignores the different stock dynamics of each individual species within the complex due to different life histories. This study completed individual assessments of scalloped (S. lewini), great (S. mokarran), and smooth (S. zygaena) hammerhead sharks in the U.S. Atlantic Ocean and Gulf of Mexico. Combined data for all three ...

  11. A potential therapeutic application of hairpin ribozymes: in vitro and in vivo studies of gene therapy for hepatitis C virus infection.

    Science.gov (United States)

    Welch, P J; Tritz, R; Yei, S; Leavitt, M; Yu, M; Barber, J

    1996-11-01

    Two effective ribozymes (CR2 and CR4) that target HCV RNA 5' UTR and capsid gene regions were generated. Ribozyme cleavage was demonstrated in vitro, which can be enhanced by facilitator RNA molecules. In tissue culture cells, these two ribozymes can inhibit the expression of a cotransfected reporter gene containing HCV RNA target sequences. Furthermore, transduction of human hepatoma cells, HepG2, with retroviral vectors carrying CR2 or CR4 ribozymes enabled the cells to resist the infection by retroviral particles containing HCV target sequences. These results represent the first positive step towards the application of hairpin ribozymes in gene therapy for the treatment of HCV infection. PMID:9044745

  12. Great hammerhead sharks swim on their side to reduce transport costs.

    Science.gov (United States)

    Payne, Nicholas L; Iosilevskii, Gil; Barnett, Adam; Fischer, Chris; Graham, Rachel T; Gleiss, Adrian C; Watanabe, Yuuki Y

    2016-01-01

    Animals exhibit various physiological and behavioural strategies for minimizing travel costs. Fins of aquatic animals play key roles in efficient travel and, for sharks, the functions of dorsal and pectoral fins are considered well divided: the former assists propulsion and generates lateral hydrodynamic forces during turns and the latter generates vertical forces that offset sharks' negative buoyancy. Here we show that great hammerhead sharks drastically reconfigure the function of these structures, using an exaggerated dorsal fin to generate lift by swimming rolled on their side. Tagged wild sharks spend up to 90% of time swimming at roll angles between 50° and 75°, and hydrodynamic modelling shows that doing so reduces drag-and in turn, the cost of transport-by around 10% compared with traditional upright swimming. Employment of such a strongly selected feature for such a unique purpose raises interesting questions about evolutionary pathways to hydrodynamic adaptations, and our perception of form and function. PMID:27457414

  13. Great hammerhead sharks swim on their side to reduce transport costs.

    Science.gov (United States)

    Payne, Nicholas L; Iosilevskii, Gil; Barnett, Adam; Fischer, Chris; Graham, Rachel T; Gleiss, Adrian C; Watanabe, Yuuki Y

    2016-01-01

    Animals exhibit various physiological and behavioural strategies for minimizing travel costs. Fins of aquatic animals play key roles in efficient travel and, for sharks, the functions of dorsal and pectoral fins are considered well divided: the former assists propulsion and generates lateral hydrodynamic forces during turns and the latter generates vertical forces that offset sharks' negative buoyancy. Here we show that great hammerhead sharks drastically reconfigure the function of these structures, using an exaggerated dorsal fin to generate lift by swimming rolled on their side. Tagged wild sharks spend up to 90% of time swimming at roll angles between 50° and 75°, and hydrodynamic modelling shows that doing so reduces drag-and in turn, the cost of transport-by around 10% compared with traditional upright swimming. Employment of such a strongly selected feature for such a unique purpose raises interesting questions about evolutionary pathways to hydrodynamic adaptations, and our perception of form and function.

  14. Application of Implicit Space Mapping in the Design of Hammerhead Filter in Millimeter-Wave Band

    Directory of Open Access Journals (Sweden)

    Fuqun Zhong

    2012-03-01

    Full Text Available In this study, we present advances in microwave and millimeter-wave device modeling exploiting the Space Mapping (SM technology. New SM-based modeling techniques are used that are easy to implement entirely in the Agilent ADS framework. The implicit space mapping algorithm is applied to the design of hammerhead filter in millimeter-wave band. The validity of this method is confirmed by comparison with fullwave EM simulation result and measured data. Based on the proposed method, a filter was designed and fabricated on a substrate with thickness of 0.254 mm and dielectric constant of 2.2. The experimental results show good agreement with simulated results. It is proved that the accuracy can be achieved using the implicit space mapping algorithm, and the design efficiency can be greatly improved.

  15. Interacting binaries

    CERN Document Server

    Shore, S N; van den Heuvel, EPJ

    1994-01-01

    This volume contains lecture notes presented at the 22nd Advanced Course of the Swiss Society for Astrophysics and Astronomy. The contributors deal with symbiotic stars, cataclysmic variables, massive binaries and X-ray binaries, in an attempt to provide a better understanding of stellar evolution.

  16. Stomach content analysis of juvenile, scalloped hammerhead shark Sphyrna lewini captured off the coast of Mazatlan, Mexico

    OpenAIRE

    Torres Rojas, Yassir E.; Hernández Herrera, Agustin; Galván Magaña, Felipe; Alatorre Ramírez, Vanessa Guadalupe

    2010-01-01

    We quantified the diet of juvenile, scalloped hammerhead shark Sphyrna lewini in the area off Mazatlan, Sinaloa, Mexico, to understand their feeding ecology this shark. The prey species of Sphyrna lewini were identified and quantified from stomach content analysis. In addition, we determined the variations between genders. During two fishing seasons (2000–2001 and 2001–2002), we analyzed 232 stomachs, of which 85% contained food. The trophic spectrum was composed of three species of cephalopo...

  17. Feeding strategy of the night shark (Carcharhinus signatus) and scalloped hammerhead shark (Sphyrna lewini) near seamounts off northeastern Brazil

    OpenAIRE

    Teodoro Vaske Júnior; Carolus Maria Vooren; Rosangela Paula Lessa

    2009-01-01

    A total of 425 stomachs of night shark (Carcharhinus signatus), and 98 stomachs of scalloped hammerhead shark (Sphyrna lewini), from longline and surface gillneters near seamounts off northeastern Brazil, were analysed between 1992 and 1999. Both predators prey upon reef and benthopelagic fishes, migrant cephalopods and deep water crustaceans, showing similar feeding niches (Schoener Index T=0.75). The great prey richness of the diets may reflect the fact that the marine food web for these sp...

  18. Pistol ribozyme adopts a pseudoknot fold facilitating site-specific in-line cleavage.

    Science.gov (United States)

    Ren, Aiming; Vušurović, Nikola; Gebetsberger, Jennifer; Gao, Pu; Juen, Michael; Kreutz, Christoph; Micura, Ronald; Patel, Dinshaw J

    2016-09-01

    The field of small self-cleaving nucleolytic ribozymes has been invigorated by the recent discovery of the twister, twister-sister, pistol and hatchet ribozymes. We report the crystal structure of a pistol ribozyme termed env25, which adopts a compact tertiary architecture stabilized by an embedded pseudoknot fold. The G-U cleavage site adopts a splayed-apart conformation with in-line alignment of the modeled 2'-O of G for attack on the adjacent to-be-cleaved P-O5' bond. Highly conserved residues G40 (N1 position) and A32 (N3 and 2'-OH positions) are aligned to act as a general base and a general acid, respectively, to accelerate cleavage chemistry, with their roles confirmed by cleavage assays on variants, and an increased pKa of 4.7 for A32. Our structure of the pistol ribozyme defined how the overall and local topologies dictate the in-line alignment at the G-U cleavage site, with cleavage assays on variants revealing key residues that participate in acid-base-catalyzed cleavage chemistry. PMID:27398999

  19. The emergence of ribozymes synthesizing membrane components in RNA-based protocells.

    Science.gov (United States)

    Ma, Wentao; Yu, Chunwu; Zhang, Wentao; Zhou, Ping; Hu, Jiming

    2010-03-01

    A significant problem of the origin of life is the emergence of cellular self-replication. In the context of the "RNA world", a crucial concern is how the RNA-based protocells could achieve the ability to produce their own membrane. Here we show, with the aid of a computer simulation, that for these protocells, there would be "immediately" a selection pressure for the emergence of a ribozyme synthesizing membrane components. The ribozyme would promote the enlargement of cellular space and favor the incoming (by permeation) of RNA's precursors, thus benefit the replication of inner RNA, including itself. Via growth and division, protocells containing the ribozyme would achieve superiority and spread in the system, and meanwhile the ribozyme would spread in the system. The present work is inspiring because it suggests that the transition from molecular self-replication to cellular self-replication might have occurred naturally (and necessarily) in the origin of life, leading to the emergence of Darwinian evolution at the cellular level. PMID:19961895

  20. Effects of NHE-1 ribozyme gene transfection on apoptosis of rat pulmonary artery smooth muscle cells in vitro

    Institute of Scientific and Technical Information of China (English)

    LU Jun-yu; YAO Wei; QIAN Gui-sheng; WU Guo-ming

    2002-01-01

    Objective:To investigate the effects of the transfection of NHE-1 ribozyme gene on the apoptosis of pulmonary artery smooth muscle cells (PASMC) in vitro. Methods: After NHE-1 ribozyme gene was designed, synthesized and then cloned into plasmid pLXSN, the recombined plasmid was tansfected into cultured rat PASMC. Expression of NHE-1 mRNA was detected with semi-quantitative RT-PCR. Intracellular pH (pHi) was measured by using fluorescence dye BCECF-AM. Cell cycle was measured with aid of flow cytometric DNA analysis. Cell apoptosis was observed with electron microscopy and terminal deoxynucleotidyl transferase-mediated dUTP nick end labelling (TUNEL) respectively. Results: The NHE-1 mRNA expression level and pHi value were significantly lower in PASMCs transfected with NHE-1 ribozyme gene than those transfected with pLXSN or without transfection. Meanwhile, the apoptosis rate of cells transfected with NHE-1 ribozyme gene was increased significantly. Morphology of cell apoptosis was observed in the cells transfected with NHE-1 ribozyme gene under an electron microscope. Conclusion: The transfection of NHE-1 ribozyme gene induces the apoptosis of PASMCs by inhibiting NHE-1 expression and intracellular acidification.

  1. Effects of fasting and refeeding on intestinal cell proliferation and apoptosis in hammerhead shark (Sphyrna lewini)

    Institute of Scientific and Technical Information of China (English)

    Hideya Takahashi; Susumu Hyodo; Tsukasa Abe; Chiyo Takagi; Gordon E Grau; Tatsuya Sakamoto

    2014-01-01

    Objective: To examine the effects of fasting and refeeding on intestinal cell proliferation and apoptosis in an opportunistic predator, hammerhead shark (Sphyrna lewini) of elasmobranch fishes which are among the earliest known extant groups of vertebrates to have the valvular intestine typical for the primitive species.Methods:5-day refeeding. Intestinal apoptosis and cell proliferation were assessed by using oligonucleotide detection assay, terminal deoxynucleotidyl transferase dUTP nick end labeling staining, and immunohistochemistry of proliferating cells nuclear antigen.Results:Animals were euthanized after 5-10 d of fasting or feeding, or after 10-day fasting and generally decreased during fasting. Numerous apoptotic cells were observed around the tips of the villi, primarily in the epithelium in the fed sharks, whereas fewer labeled nuclei were detected in the epithelium of fasted sharks. Refeeding returned intestinal apoptosis to the level in the fed sharks. Proliferating cells were observed in the epithelium around the troughs of the villi and greater in number in fed sharks, whereas fewer labeled nuclei were detected in fasted sharks. Plasma levels of cholesterol and glucose were reduced by fasting. Intestinal apoptosis Conclusions: The cell turnover is modified in both intestinal epithelia of the shark and the murines by fasting/feeding, but in opposite directions. The difference may reflect the feeding ecology of the elasmobranchs, primitive intermittent feeders.

  2. Effects of fasting and refeeding on intestinal cell proliferation and apoptosis in hammerhead shark (Sphyrna lewini

    Directory of Open Access Journals (Sweden)

    Hideya Takahashi

    2014-04-01

    Full Text Available Objective: To examine the effects of fasting and refeeding on intestinal cell proliferation and apoptosis in an opportunistic predator, hammerhead shark (Sphyrna lewini of elasmobranch fishes which are among the earliest known extant groups of vertebrates to have the valvular intestine typical for the primitive species. Methods: Animals were euthanized after 5-10 d of fasting or feeding, or after 10-day fasting and 5-day refeeding. Intestinal apoptosis and cell proliferation were assessed by using oligonucleotide detection assay, terminal deoxynucleotidyl transferase dUTP nick end labeling staining, and immunohistochemistry of proliferating cells nuclear antigen. Results: Plasma levels of cholesterol and glucose were reduced by fasting. Intestinal apoptosis generally decreased during fasting. Numerous apoptotic cells were observed around the tips of the villi, primarily in the epithelium in the fed sharks, whereas fewer labeled nuclei were detected in the epithelium of fasted sharks. Refeeding returned intestinal apoptosis to the level in the fed sharks. Proliferating cells were observed in the epithelium around the troughs of the villi and greater in number in fed sharks, whereas fewer labeled nuclei were detected in fasted sharks. Conclusions: The cell turnover is modified in both intestinal epithelia of the shark and the murines by fasting/feeding, but in opposite directions. The difference may reflect the feeding ecology of the elasmobranchs, primitive intermittent feeders.

  3. Binary Planets

    Science.gov (United States)

    Ryan, Keegan; Nakajima, Miki; Stevenson, David J.

    2014-11-01

    Can a bound pair of similar mass terrestrial planets exist? We are interested here in bodies with a mass ratio of ~ 3:1 or less (so Pluto/Charon or Earth/Moon do not qualify) and we do not regard the absence of any such discoveries in the Kepler data set to be significant since the tidal decay and merger of a close binary is prohibitively fast well inside of 1AU. SPH simulations of equal mass “Earths” were carried out to seek an answer to this question, assuming encounters that were only slightly more energetic than parabolic (zero energy). We were interested in whether the collision or near collision of two similar mass bodies would lead to a binary in which the two bodies remain largely intact, effectively a tidal capture hypothesis though with the tidal distortion being very large. Necessarily, the angular momentum of such an encounter will lead to bodies separated by only a few planetary radii if capture occurs. Consistent with previous work, mostly by Canup, we find that most impacts are disruptive, leading to a dominant mass body surrounded by a disk from which a secondary forms whose mass is small compared to the primary, hence not a binary planet by our adopted definition. However, larger impact parameter “kissing” collisions were found to produce binaries because the dissipation upon first encounter was sufficient to provide a bound orbit that was then rung down by tides to an end state where the planets are only a few planetary radii apart. The long computational times for these simulation make it difficult to fully map the phase space of encounters for which this outcome is likely but the indications are that the probability is not vanishingly small and since planetary encounters are a plausible part of planet formation, we expect binary planets to exist and be a non-negligible fraction of the larger orbital radius exoplanets awaiting discovery.

  4. RNA-based networks: using RNA aptamers and ribozymes as synthetic genetic devices.

    Science.gov (United States)

    Weigand, Julia E; Wittmann, Alexander; Suess, Beatrix

    2012-01-01

    Within the last few years, a set of synthetic riboswitches has been engineered, which expands the toolbox of genetic regulatory devices. Small molecule binding aptamers have been used for the design of such riboswitches by insertion into untranslated regions of mRNAs, exploiting the fact that upon ligand binding the RNA structure interferes either with translation initiation or pre-mRNA splicing in yeast. In combination with self-cleaving ribozymes, aptamers have been used to modulate RNA stability. In this chapter, we discuss the applicability of different aptamers, ways to identify novel genetic devices, the pros and cons of various insertion sites and the application of allosteric ribozymes. Our expertise help to apply synthetic riboswitches to engineer complex genetic circuits. PMID:22083741

  5. Binary effectivity rules

    DEFF Research Database (Denmark)

    Keiding, Hans; Peleg, Bezalel

    2006-01-01

    is binary if it is rationalized by an acyclic binary relation. The foregoing result motivates our definition of a binary effectivity rule as the effectivity rule of some binary SCR. A binary SCR is regular if it satisfies unanimity, monotonicity, and independence of infeasible alternatives. A binary...

  6. Contributions to the tooth morphology in early embryos of three species of hammerhead sharks (Elasmobranchii: Sphyrnidae) and their evolutionary implications.

    Science.gov (United States)

    Mello, Waldiney; Brito, Paulo Marques Machado

    2013-09-01

    The tooth types in the embryos of the hammerhead sharks Sphyrna tiburo, Sphyrna tudes and Eusphyra blochii are here described in labial and lingual views, and, in some cases, in additional views. The presence of cusplets was observed in the anterior teeth of S. tiburo and S. tudes, which is secondarily lost after early embryonic stages. Many aligned root foramina were detected in the sphyrnids, which, as the cusplets, are shared by many phylogenetic-related carcharhinids. Other anatomic features, related to the root and central cusp, are presented for the first time. Such characters represent the first step to compare the teeth of extant and fossil species.

  7. The Hairpin Ribozyme Substrate Binding-domain: A Highly Constrained D-shaped Conformation

    OpenAIRE

    Pinard, Robert; Lambert, Dominic; Heckman, Joyce; Esteban, José A.; Gundlach IV, William; Hampel, Ken J.; Glick, Gary D.; Walter, Nils; Major, François; John M. Burke

    2011-01-01

    The two domains of the hairpin ribozyme-substrate complex, usually depicted as straight structural elements, must interact with one another in order to form an active conformation. Little is known about the internal geometry of the individual domains in an active docked complex. Using various crosslinking and structural approaches in conjunction with molecular modeling (constraint-satisfaction program MC-SYM), we have investigated the conformation of the substrate-binding do...

  8. Nucleotide synthetase ribozymes may have emerged first in the RNA world

    OpenAIRE

    Ma, Wentao; Yu, Chunwu; Zhang, Wentao; Hu, Jiming

    2007-01-01

    Though the “RNA world” hypothesis has gained a central role in ideas concerning the origin of life, the scenario concerning its emergence remains uncertain. It has been speculated that the first scene may have been the emergence of a template-dependent RNA synthetase ribozyme, which catalyzed its own replication: thus, “RNA replicase.” However, the speculation remains uncertain, primarily because of the large sequence length requirement of such a replicase and the lack of a convincing mechani...

  9. Cations and hydration in catalytic RNA: molecular dynamics of the hepatitis delta virus ribozyme.

    Science.gov (United States)

    Krasovska, Maryna V; Sefcikova, Jana; Réblová, Kamila; Schneider, Bohdan; Walter, Nils G; Sponer, Jirí

    2006-07-15

    The hepatitis delta virus (HDV) ribozyme is an RNA enzyme from the human pathogenic HDV. Cations play a crucial role in self-cleavage of the HDV ribozyme, by promoting both folding and chemistry. Experimental studies have revealed limited but intriguing details on the location and structural and catalytic functions of metal ions. Here, we analyze a total of approximately 200 ns of explicit-solvent molecular dynamics simulations to provide a complementary atomistic view of the binding of monovalent and divalent cations as well as water molecules to reaction precursor and product forms of the HDV ribozyme. Our simulations find that an Mg2+ cation binds stably, by both inner- and outer-sphere contacts, to the electronegative catalytic pocket of the reaction precursor, in a position to potentially support chemistry. In contrast, protonation of the catalytically involved C75 in the precursor or artificial placement of this Mg2+ into the product structure result in its swift expulsion from the active site. These findings are consistent with a concerted reaction mechanism in which C75 and hydrated Mg2+ act as general base and acid, respectively. Monovalent cations bind to the active site and elsewhere assisted by structurally bridging long-residency water molecules, but are generally delocalized.

  10. Demographic processes underlying subtle patterns of population structure in the scalloped hammerhead shark, Sphyrna lewini.

    Directory of Open Access Journals (Sweden)

    Holly A Nance

    Full Text Available Genetic diversity (θ, effective population size (N(e, and contemporary levels of gene flow are important parameters to estimate for species of conservation concern, such as the globally endangered scalloped hammerhead shark, Sphyrna lewini. Therefore, we have reconstructed the demographic history of S. lewini across its Eastern Pacific (EP range by applying classical and coalescent population genetic methods to a combination of 15 microsatellite loci and mtDNA control region sequences. In addition to significant population genetic structure and isolation-by-distance among seven coastal sites between central Mexico and Ecuador, the analyses revealed that all populations have experienced a bottleneck and that all current values of θ are at least an order of magnitude smaller than ancestral θ, indicating large decreases in N(e (θ = 4N(eμ, where μ is the mutation rate. Application of the isolation-with-migration (IM model showed modest but significant genetic connectivity between most sampled sites (point estimates of Nm = 0.1-16.7, with divergence times (t among all populations significantly greater than zero. Using a conservative (i.e., slow fossil-based taxon-specific phylogenetic calibration for mtDNA mutation rates, posterior probability distributions (PPDs for the onset of the decline in N(e predate modern fishing in this region. The cause of decline over the last several thousand years is unknown but is highly atypical as a post-glacial demographic history. Regardless of the cause, our data and analyses suggest that S. lewini was far more abundant throughout the EP in the past than at present.

  11. The structure of the isolated, central hairpin of the HDV antigenomic ribozyme: novel structural features and similarity of the loop in the ribozyme and free in solution.

    Science.gov (United States)

    Kolk, M H; Heus, H A; Hilbers, C W

    1997-01-01

    The structure of an RNA hairpin containing a seven-nucleotide loop that is present in the self-cleaving sequence of hepatitis delta virus antigenomic RNA was determined by high resolution NMR spectroscopy. The loop, which is composed of only one purine and six pyrimidines, has a suprisingly stable structure, mainly supported by sugar hydroxyl hydrogen bonds and base-base and base-phosphate stacking interactions. Compared with the structurally well-determined, seven-membered anticodon loop in tRNA, the sharp turn which affects the required 180 degrees change in direction of the sugar-phosphate backbone in the loop is shifted one nucleotide in the 3' direction. This change in direction can be characterized as a reversed U-turn. It is expected that the reversed U-turn may be found frequently in other molecules as well. There is evidence for a new non-Watson-Crick UC base pair formed between the first and the last residue in the loop, while most of the other bases in the loop are pointing outwards making them accessible to solvent. From chemical modification, mutational and photocrosslinking studies, a similar picture develops for the structure of the hairpin in the active ribozyme indicating that the loop structure in the isolated hairpin and in the ribozyme is very similar. PMID:9218809

  12. Inhibition of K562 cell growth and tumor angiogenesis in nude mice by transfection of anti-VEGF hairpin ribozyme gene into the cells

    Institute of Scientific and Technical Information of China (English)

    许文林

    2006-01-01

    Objective To explore the effect of anti-VEGF hairpin ribozyme gene on the tumor cell growth and tumor angiogenesis in nude mice. Methods The recombinant eukaryotic expression plasmid pcDNA-RZ containing anti-VEGF hairpin ribozyme gene and the empty vector plasmid pcDNA were introduced separately into K562 cells

  13. GENE THERAPY USING RETROVIRAL VECTOR OF bcr-abl SPECIFIC MULTI-UNIT RIBOZYMES COULD INHIBIT CML CELL GROWTH AND INDUCE APOPTOSIS

    Institute of Scientific and Technical Information of China (English)

    冯琦; 孙凯; 赵永同; 张涛; 尚振川; 王莎; 王玮; 赵宁; 颜真; 韩苇; 张英起; 孙秉中

    2003-01-01

    Objective: To investigate the in vitro cleavage ability and effects on apoptosis and cell growth of the bcr-abl fusion gene specific multi-unit ribozymes. Methods: Three fusion point specific ribozymes were designed and the multi-unit ribozymes' in vitro transcription vector and retroviral vector were constructed. The in vitro cleavage ability was tested. The retroviral vector was transfected into K562 cell and the effects on proliferation, apoptosis, cell cycle and cell structure were observed. Results: Multi-unit ribozymes had in vitro cleavage efficiency of 70.8%, which was more efficient than single-unit and double-unit ribozymes. Transfection of the retroviral vector of the ribozyme into K562 cells, induced inhibition of cell growth and apoptosis. The incorporation rate of DNA in ribozymes transfected K562 cells was greatly decreased along with time passed, with an inhibition rate of more than 50% after 96 h of transfection. Under FCM, 18.4% of the cells underwent apoptosis 72 h after transfection and more cells were blocked in G phase, with the ratio in S phase greatly decreased (41.9%). Under electron microscope, compaction of nuclear chromatin and apoptosis bodies were observed.Conclusion: Multi-unit ribozymes specific to bcr-abl fusion gene can be used to treat CML and to purge bone marrow for self-grafting.

  14. A conformational switch in the DiGIR1 ribozyme involved in release and folding of the downstream I-DirI mRNA

    DEFF Research Database (Denmark)

    Nielsen, Henrik; Einvik, Christer; Lentz, Thomas E;

    2009-01-01

    DiGIR1 is a group I-like cleavage ribozyme found as a structural domain within a nuclear twin-ribozyme group I intron. DiGIR1 catalyzes cleavage by branching at an Internal Processing Site (IPS) leading to formation of a lariat cap at the 5'-end of the 3'-cleavage product. The 3'-cleavage product...

  15. Thiosulfate-Hydrogen Peroxide Redox Oscillator as pH Driver for Ribozyme Activity in the RNA World.

    Science.gov (United States)

    Ball, Rowena; Brindley, John

    2016-03-01

    The RNA world of more than 3.7 billion years ago may have drawn on thermal and pH oscillations set up by the oxidation of thiosulfate by hydrogen peroxide (the THP oscillator) as a power source to drive replication. Since this primordial RNA also must have developed enzyme functionalities, in this work we examine the responses of two simple ribozymes to a THP periodic drive, using experimental rate and thermochemical data in a dynamical model for the coupled, self-consistent evolution of all reactants and intermediates. The resulting time traces show that ribozyme performance can be enhanced under pH cycling, and that thermal cycling may have been necessary to achieve large performance gains. We discuss three important ways in which the dynamic hydrogen peroxide medium may have acted as an agent for development of the RNA world towards a cellular world: proton gradients, resolution of the ribozyme versus replication paradox, and vesicle formation.

  16. Short-term sequence evolution and vertical inheritance of the Naegleria twin-ribozyme group I intron

    Directory of Open Access Journals (Sweden)

    De Jonckheere Johan F

    2006-05-01

    Full Text Available Abstract Background Ribosomal DNA of several species of the free-living Naegleria amoeba harbors an optional group I intron within the nuclear small subunit ribosomal RNA gene. The intron (Nae.S516 has a complex organization of two ribozyme domains (NaGIR1 and NaGIR2 and a homing endonuclease gene (NaHEG. NaGIR2 is responsible for intron excision, exon ligation, and full-length intron RNA circularization, reactions typical for nuclear group I intron ribozymes. NaGIR1, however, is essential for NaHEG expression by generating the 5' end of the homing endonuclease messenger RNA. Interestingly, this unusual class of ribozyme adds a lariat-cap at the mRNA. Results To elucidate the evolutionary history of the Nae.S516 twin-ribozyme introns we have analyzed 13 natural variants present in distinct Naegleria isolates. Structural variabilities were noted within both the ribozyme domains and provide strong comparative support to the intron secondary structure. One of the introns, present in N. martinezi NG872, contains hallmarks of a degenerated NaHEG. Phylogenetic analyses performed on separate data sets representing NaGIR1, NaGIR2, NaHEG, and ITS1-5.8S-ITS2 ribosomal DNA are consistent with an overall vertical inheritance pattern of the intron within the Naegleria genus. Conclusion The Nae.S516 twin-ribozyme intron was gained early in the Naegleria evolution with subsequent vertical inheritance. The intron was lost in the majority of isolates (70%, leaving a widespread but scattered distribution pattern. Why the apparent asexual Naegleria amoebae harbors active intron homing endonucleases, dependent on sexual reproduction for its function, remains a puzzle.

  17. Analysis of the tertiary structure of the ribonuclease P ribozyme-substrate complex by site-specific photoaffinity crosslinking.

    Science.gov (United States)

    Harris, M E; Kazantsev, A V; Chen, J L; Pace, N R

    1997-06-01

    Bacterial ribonuclease P (RNase P), an endonuclease involved in tRNA maturation, is a ribonucleoprotein containing a catalytic RNA. The secondary structure of this ribozyme is well-established, and a low-resolution model of the three-dimensional structure of the ribozyme-substrate complex has been proposed based on site-specific crosslinking and phylogenetic comparative data [Harris ME et al., 1994 EMBO J 13:3953-3963]. However, several substructures of that model were poorly constrained by the available data. In the present analysis, additional constraints between elements within the Escherichia coli RNase P RNA-pre-tRNA complex were determined by intra- and intermolecular crosslinking experiments. Circularly permuted RNase P RNAs were used to position an azidophenacyl photoactive crosslinking agent specifically at strategic sites within the ribozyme-substrate complex. Crosslink sites were mapped by primer extension and confirmed by analysis of the mobility of the crosslinked RNA lariats on denaturing acrylamide gels relative to circular and linear RNA standards. Crosslinked species generally retained significant catalytic activity, indicating that the results reflect the native ribozyme structure. The crosslinking results support the general configuration of the structure model and predicate new positions and orientations for helices that were previously poorly constrained by the data set. The expanded library of crosslinking constraints was used, together with secondary and tertiary structure identified by phylogenetic sequence comparisons, to refine significantly the model of RNase P RNA with bound substrate pre-tRNA. The crosslinking results and data from chemical-modification and mutational studies are discussed in the context of the current structural perspective on this ribozyme. PMID:9174092

  18. 破碎机锤头铸造成型数值模拟%Numerical Simulation of Casting Process for Crusher Hammerhead

    Institute of Scientific and Technical Information of China (English)

    易克传; 乔印虎

    2012-01-01

    锤击式破碎机锤头在使用中受交变力的作用,极易磨损乃至失效破坏.在有限元应力分析基础上,找出极易发生破坏的部位.通过材料的合理选择,铸造工艺的合理设计,并进行锤头铸造模拟,确保了铸件质量,以便延长锤头使用寿命,提高设计效率.%Crusher hammerhead is exerted force of alternate change in working. Fatigue loads can lead to damage and eventually to failures of hammer. Based on the finite element stress analysis, the site of easy damage was identified. Through the choice of proper material, the design of rational casting process and simulation of casting process for hammerhead, the quality of castings was ensured to extend the hammerhead life and to improve design efficiency.

  19. Dynamic signal processing by ribozyme-mediated RNA circuits to control gene expression.

    Science.gov (United States)

    Shen, Shensi; Rodrigo, Guillermo; Prakash, Satya; Majer, Eszter; Landrain, Thomas E; Kirov, Boris; Daròs, José-Antonio; Jaramillo, Alfonso

    2015-05-26

    Organisms have different circuitries that allow converting signal molecule levels to changes in gene expression. An important challenge in synthetic biology involves the de novo design of RNA modules enabling dynamic signal processing in live cells. This requires a scalable methodology for sensing, transmission, and actuation, which could be assembled into larger signaling networks. Here, we present a biochemical strategy to design RNA-mediated signal transduction cascades able to sense small molecules and small RNAs. We design switchable functional RNA domains by using strand-displacement techniques. We experimentally characterize the molecular mechanism underlying our synthetic RNA signaling cascades, show the ability to regulate gene expression with transduced RNA signals, and describe the signal processing response of our systems to periodic forcing in single live cells. The engineered systems integrate RNA-RNA interaction with available ribozyme and aptamer elements, providing new ways to engineer arbitrary complex gene circuits.

  20. Inducible Expression and Splicing of Candida Group Ⅰ Ribozyme in E.coli

    Institute of Scientific and Technical Information of China (English)

    SHANG Yuan; WANG Chen; ZHANG Yi

    2005-01-01

    The Ca. LSU intron flanking a 129 bp exon upstream and a 100 bp exon downstream was inserted into the lacZ gene on pRS426 to transform E. coli. Northern blot analysis and RT-PCR showed that splicing of Ca. LSU in E.coli is efficient upon inducible expression of the precursor RNA. In contrast, co-transcriptional self-splicing of the intron in vitro is much less active. Therefore, this E. coli splicing system can be used as a better model to investigate the effect of the ribozyme inhibitors on Ca. LSU splicing in living cell. We examined the effects of neomycin sulfate and pentamidine on Ca. LSU splicing in E. coli, and found that these drugs does-dependently inhibit the intron splicing.However, heomycin is more potent than pentamidine in this action.

  1. Eclipsing binaries in open clusters

    DEFF Research Database (Denmark)

    Southworth, John; Clausen, J.V.

    2006-01-01

    Stars: fundamental parameters - Stars : binaries : eclipsing - Stars: Binaries: spectroscopic - Open clusters and ass. : general Udgivelsesdato: 5 August......Stars: fundamental parameters - Stars : binaries : eclipsing - Stars: Binaries: spectroscopic - Open clusters and ass. : general Udgivelsesdato: 5 August...

  2. Binary mask programmable hologram.

    Science.gov (United States)

    Tsang, P W M; Poon, T-C; Zhou, Changhe; Cheung, K W K

    2012-11-19

    We report, for the first time, the concept and generation of a novel Fresnel hologram called the digital binary mask programmable hologram (BMPH). A BMPH is comprised of a static, high resolution binary grating that is overlaid with a lower resolution binary mask. The reconstructed image of the BMPH can be programmed to approximate a target image (including both intensity and depth information) by configuring the pattern of the binary mask with a simple genetic algorithm (SGA). As the low resolution binary mask can be realized with less stringent display technology, our method enables the development of simple and economical holographic video display.

  3. Induction of wild-type p53 activity in human cancer cells by ribozymes that repair mutant p53 transcripts

    OpenAIRE

    Watanabe, Takashi; Sullenger, Bruce A

    2000-01-01

    Several groups have attempted to develop gene therapy strategies to treat cancer via introduction of the wild-type (wt) p53 cDNA into cancer cells. Unfortunately, these approaches do not result in regulated expression of the p53 gene and do not reduce expression of the mutant p53 that is overexpressed in cancerous cells. These shortcomings may greatly limit the utility of this gene replacement approach. We describe an alternative strategy with trans-splicing ribozymes that can simultaneously ...

  4. Tailing cDNAs with terminal deoxynucleotidyl transferase in RT-PCR assays to identify ribozyme cleavage products.

    OpenAIRE

    Albuquerque-Silva, J; Houard, S.; Bollen, A.

    1998-01-01

    Polytailing a cDNA with terminal deoxynucleotidyltransferase (TdT) results in the addition of a homopolymeric sequence at its 3'-end. Here we describe the use of tailing in competitive RT-PCR assays to evaluate cleavage efficiency of ribozymes. Using a system that perfectly mimics intracellular cleavage, we were able to detect as few as 1% of cleaved moieties. Furthermore, employing primers overlapping the junction between tails and the cleaved RNA moiety in non-competitive assays, the sensit...

  5. PHOEBE: PHysics Of Eclipsing BinariEs

    Science.gov (United States)

    Prsa, Andrej; Matijevic, Gal; Latkovic, Olivera; Vilardell, Francesc; Wils, Patrick

    2011-06-01

    PHOEBE (PHysics Of Eclipsing BinariEs) is a modeling package for eclipsing binary stars, built on top of the widely used WD program (Wilson & Devinney 1971). This introductory paper overviews most important scientific extensions (incorporating observational spectra of eclipsing binaries into the solution-seeking process, extracting individual temperatures from observed color indices, main-sequence constraining and proper treatment of the reddening), numerical innovations (suggested improvements to WD's Differential Corrections method, the new Nelder & Mead's downhill Simplex method) and technical aspects (back-end scripter structure, graphical user interface). While PHOEBE retains 100% WD compatibility, its add-ons are a powerful way to enhance WD by encompassing even more physics and solution reliability.

  6. Feeding strategy of the night shark (Carcharhinus signatus and scalloped hammerhead shark (Sphyrna lewini near seamounts off northeastern Brazil

    Directory of Open Access Journals (Sweden)

    Teodoro Vaske Júnior

    2009-06-01

    Full Text Available A total of 425 stomachs of night shark (Carcharhinus signatus, and 98 stomachs of scalloped hammerhead shark (Sphyrna lewini, from longline and surface gillneters near seamounts off northeastern Brazil, were analysed between 1992 and 1999. Both predators prey upon reef and benthopelagic fishes, migrant cephalopods and deep water crustaceans, showing similar feeding niches (Schoener Index T=0.75. The great prey richness of the diets may reflect the fact that the marine food web for these species is very extensive in this region. Due to the concentration for feeding of both predators in the seamounts, intense fisheries should be monitored to avoid localised depletions.Um total de 425 estômagos de tubarão-toninha (Carcharhinus signatus e 98 estômagos de tubarão-martelo-entalhado (Sphyrna lewini, oriundos da pesca de espinhel e pesca com rede de emalhe nas adjacências dos bancos oceânicos do nordeste do Brasil, foi analisado entre 1992 e 1999. Ambas as espécies predam sobre peixes bento-pelágicos e recifais, cefalópodes migradores, e crustáceos de águas profundas, apresentando nichos alimentares similares (Índice de Schoener T=0.75. A alta riqueza de presas nas dietas deve ser um reflexo de que as teias alimentares para estas espécies são consideravelmente longas nessa região. Devido à concentração alimentar de ambos predadores nos bancos oceânicos, a pescaria intensa deve ser monitorada para evitar depleções locais.

  7. Global phylogeography with mixed-marker analysis reveals male-mediated dispersal in the endangered scalloped hammerhead shark (Sphyrna lewini.

    Directory of Open Access Journals (Sweden)

    Toby S Daly-Engel

    Full Text Available BACKGROUND: The scalloped hammerhead shark, Sphyrna lewini, is a large endangered predator with a circumglobal distribution, observed in the open ocean but linked ontogenetically to coastal embayments for parturition and juvenile development. A previous survey of maternal (mtDNA markers demonstrated strong genetic partitioning overall (global Φ(ST = 0.749 and significant population separations across oceans and between discontinuous continental coastlines. METHODOLOGY/PRINCIPAL FINDINGS: We surveyed the same global range with increased sample coverage (N = 403 and 13 microsatellite loci to assess the male contribution to dispersal and population structure. Biparentally inherited microsatellites reveal low or absent genetic structure across ocean basins and global genetic differentiation (F(ST = 0.035 over an order of magnitude lower than the corresponding measures for maternal mtDNA lineages (Φ(ST = 0.749. Nuclear allelic richness and heterozygosity are high throughout the Indo-Pacific, while genetic structure is low. In contrast, allelic diversity is low while population structure is higher for populations at the ends of the range in the West Atlantic and East Pacific. CONCLUSIONS/SIGNIFICANCE: These data are consistent with the proposed Indo-Pacific center of origin for S. lewini, and indicate that females are philopatric or adhere to coastal habitats while males facilitate gene flow across oceanic expanses. This study includes the largest sampling effort and the most molecular loci ever used to survey the complete range of a large oceanic predator, and findings emphasize the importance of incorporating mixed-marker analysis into stock assessments of threatened and endangered shark species.

  8. Interacting binary stars

    CERN Document Server

    Sahade, Jorge; Ter Haar, D

    1978-01-01

    Interacting Binary Stars deals with the development, ideas, and problems in the study of interacting binary stars. The book consolidates the information that is scattered over many publications and papers and gives an account of important discoveries with relevant historical background. Chapters are devoted to the presentation and discussion of the different facets of the field, such as historical account of the development in the field of study of binary stars; the Roche equipotential surfaces; methods and techniques in space astronomy; and enumeration of binary star systems that are studied

  9. Crystallization and preliminary diffraction analysis of a group I ribozyme from bacteriophage Twort

    International Nuclear Information System (INIS)

    A group I self-splicing RNA has been synthesized and cocrystallized with a four-nucleotide product RNA. Iodination of the product RNA produces a heavy-atom derivative suitable for structure determination. Group I introns are catalytic RNAs that are capable of performing a variety of phosphotransesterification reactions including self-splicing and RNA cleavage. The reactions are efficient, accurate and dependent only on the presence of guanosine-nucleotide substrate and sufficient magnesium ion to stabilize the structure of the RNA. To understand how the group I intron active-site facilitates catalysis, crystals of a 242-nucleotide ribozyme bound to a four-nucleotide product RNA have been produced that diffract to 3.6 Å resolution. The space group of these crystals is I212121 and the unit-cell parameters are a = 94.6, b = 141.0, c = 210.9 Å. A single heavy-atom derivative has been synthesized by covalent modification of the product RNA with iodine

  10. Limits of neutral drift: lessons from the in vitro evolution of two ribozymes.

    Science.gov (United States)

    Petrie, Katherine L; Joyce, Gerald F

    2014-10-01

    The relative contributions of adaptive selection and neutral drift to genetic change are unknown but likely depend on the inherent abundance of functional genotypes in sequence space and how accessible those genotypes are to one another. To better understand the relative roles of selection and drift in evolution, local fitness landscapes for two different RNA ligase ribozymes were examined using a continuous in vitro evolution system under conditions that foster the capacity for neutral drift to mediate genetic change. The exploration of sequence space was accelerated by increasing the mutation rate using mutagenic nucleotide analogs. Drift was encouraged by carrying out evolution within millions of separate compartments to exploit the founder effect. Deep sequencing of individuals from the evolved populations revealed that the distribution of genotypes did not escape the starting local fitness peak, remaining clustered around the sequence used to initiate evolution. This is consistent with a fitness landscape where high-fitness genotypes are sparse and well isolated, and suggests, at least in this context, that neutral drift alone is not a primary driver of genetic change. Neutral drift does, however, provide a repository of genetic variation upon which adaptive selection can act.

  11. Stabilization of ribozyme-like cis-noncoding rRNAs induces apoptotic and nonapoptotic death in lung cells

    OpenAIRE

    Gee, M; Gu, Y.; Fields, J R; Shiao, Y-H

    2012-01-01

    Bidirectional non-protein-coding RNAs are ubiquitously transcribed from the genome. Convergent sense and antisense transcripts may regulate each other. Here, we examined the convergent cis-noncoding rRNAs (nc-rRNAs) in A5 and E9 lung cancer models. Sense nc-rRNAs extending from rDNA intergenic region to internal transcribed spacer of around 10 kb in length were identified. nc-rRNAs in sense direction exhibited in vitro characteristics of ribozymes, namely, degradation upon incubation with MgC...

  12. A Novel Vector for Abundant Expression of Antisense RNA, Triplex-forming RNA and Ribozyme in vivo

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    For abundant expression of antisense RNA, triplex-forming RNA and Ribozyme in vivo, a novel vector pBSKneorU6' was constructed by PCR cloning. This vector contains the intact human snRNA U6 gene expression unit, yet replacing the 61-nt-sequence in the middle of U6 snRNA coding region with three restriction enzyme sites. Hela nuclear extract in vitro transcription experiments demonstrated that this vector can effectively express U6 mutant RNA. Containing neor at the same time, stably transfected pBSKneorU6' can be selected easily.

  13. Binaries in globular clusters

    Science.gov (United States)

    Hut, Piet; Mcmillan, Steve; Goodman, Jeremy; Mateo, Mario; Phinney, E. S.; Pryor, Carlton; Richer, Harvey B.; Verbunt, Frank; Weinberg, Martin

    1992-01-01

    Recent observations have shown that globular clusters contain a substantial number of binaries most of which are believed to be primordial. We discuss different successful optical search techniques, based on radial-velocity variables, photometric variables, and the positions of stars in the color-magnitude diagram. In addition, we review searches in other wavelengths, which have turned up low-mass X-ray binaries and more recently a variety of radio pulsars. On the theoretical side, we give an overview of the different physical mechanisms through which individual binaries evolve. We discuss the various simulation techniques which recently have been employed to study the effects of a primordial binary population, and the fascinating interplay between stellar evolution and stellar dynamics which drives globular-cluster evolution.

  14. The binary proletariat

    OpenAIRE

    Bolt, Nate

    2000-01-01

    In the endless quest to transform itself, capitalism has spawned a new working class. The proletariat was an essential product of the industrial revolution, and the lighter, more efficient capitalism of the digital revolution has created the Binary Proletariat.

  15. Activating the branch-forming splicing pathway by reengineering the ribozyme component of a natural group II intron.

    Science.gov (United States)

    Monachello, Dario; Michel, François; Costa, Maria

    2016-03-01

    When assayed in vitro, group IIC self-splicing introns, which target bacterial Rho-independent transcription terminators, generally fail to yield branched products during splicing despite their possessing a seemingly normal branchpoint. Starting with intron O.i.I1 from Oceanobacillus iheyensis, whose crystallographically determined structure lacks branchpoint-containing domain VI, we attempted to determine what makes this intron unfit for in vitro branch formation. A major factor was found to be the length of the helix at the base of domain VI: 4 base pairs (bp) are required for efficient branching, even though a majority of group IIC introns have a 3-bp helix. Equally important for lariat formation is the removal of interactions between ribozyme domains II and VI, which are specific to the second step of splicing. Conversely, mismatching of domain VI and its proposed first-step receptor in subdomain IC1 was found to be detrimental; these data suggest that the intron-encoded protein may promote branch formation partly by modulating the equilibrium between conformations specific to the first and second steps of splicing. As a practical application, we show that by making just two changes to the O.i.I1 ribozyme, it is possible to generate sufficient amounts of lariat intron for the latter to be purified and used in kinetic assays in which folding and reaction are uncoupled. PMID:26769855

  16. Eclipsing Binary Pulsars

    CERN Document Server

    Freire, P C C

    2004-01-01

    The first eclipsing binary pulsar, PSR B1957+20, was discovered in 1987. Since then, 13 other eclipsing low-mass binary pulsars have been found, 12 of these are in globular clusters. In this paper we list the known eclipsing binary pulsars and their properties, with special attention to the eclipsing systems in 47 Tuc. We find that there are two fundamentally different groups of eclipsing binary pulsars; separated by their companion masses. The less massive systems (M_c ~ 0.02 M_sun) are a product of predictable stellar evolution in binary pulsars. The systems with more massive companions (M_c ~ 0.2 M_sun) were formed by exchange encounters in globular clusters, and for that reason are exclusive to those environments. This class of systems can be used to learn about the neutron star recycling fraction in the globular clusters actively forming pulsars. We suggest that most of these binary systems are undetectable at radio wavelengths.

  17. Stellar collisions during binary-binary and binary-single star interactions

    NARCIS (Netherlands)

    J.M. Fregeau; P. Cheung; S.F. Portegies Zwart; F.A. Rasio

    2004-01-01

    Physical collisions between stars occur frequently in dense star clusters, either via close encounters between two single stars, or during strong dynamical interactions involving binary stars. Here we study stellar collisions that occur during binary-single and binary-binary interactions, by perform

  18. Molecular Dynamics Study of Twister Ribozyme: Role of Mg(2+) Ions and the Hydrogen-Bonding Network in the Active Site.

    Science.gov (United States)

    Ucisik, Melek N; Bevilacqua, Philip C; Hammes-Schiffer, Sharon

    2016-07-12

    The recently discovered twister ribozyme is thought to utilize general acid-base catalysis in its self-cleavage mechanism, but the roles of nucleobases and metal ions in the mechanism are unclear. Herein, molecular dynamics simulations of the env22 twister ribozyme are performed to elucidate the structural and equilibrium dynamical properties, as well as to examine the role of Mg(2+) ions and possible candidates for the general base and acid in the self-cleavage mechanism. The active site region and the ends of the pseudoknots were found to be less mobile than other regions of the ribozyme, most likely providing structural stability and possibly facilitating catalysis. A purported catalytic Mg(2+) ion and the closest neighboring Mg(2+) ion remained chelated and relatively immobile throughout the microsecond trajectories, although removal of these Mg(2+) ions did not lead to any significant changes in the structure or equilibrium motions of the ribozyme on the microsecond time scale. In addition, a third metal ion, a Na(+) ion remained close to A1(O5'), the leaving group atom, during the majority of the microsecond trajectories, suggesting that it might stabilize the negative charge on A1(O5') during self-cleavage. The locations of these cations and their interactions with key nucleotides in the active site suggest that they may be catalytically relevant. The P1 stem is partially melted at its top and bottom in the crystal structure and further unwinds in the trajectories. The simulations also revealed an interconnected network comprised of hydrogen-bonding and π-stacking interactions that create a relatively rigid network around the self-cleavage site. The nucleotides involved in this network are among the highly conserved nucleotides in twister ribozymes, suggesting that this interaction network may be important to structure and function. PMID:27295275

  19. Skewed Binary Search Trees

    DEFF Research Database (Denmark)

    Brodal, Gerth Stølting; Moruz, Gabriel

    2006-01-01

    It is well-known that to minimize the number of comparisons a binary search tree should be perfectly balanced. Previous work has shown that a dominating factor over the running time for a search is the number of cache faults performed, and that an appropriate memory layout of a binary search tree...... can reduce the number of cache faults by several hundred percent. Motivated by the fact that during a search branching to the left or right at a node does not necessarily have the same cost, e.g. because of branch prediction schemes, we in this paper study the class of skewed binary search trees....... For all nodes in a skewed binary search tree the ratio between the size of the left subtree and the size of the tree is a fixed constant (a ratio of 1/2 gives perfect balanced trees). In this paper we present an experimental study of various memory layouts of static skewed binary search trees, where each...

  20. Binary Masking & Speech Intelligibility

    DEFF Research Database (Denmark)

    Boldt, Jesper

    The purpose of this thesis is to examine how binary masking can be used to increase intelligibility in situations where hearing impaired listeners have difficulties understanding what is being said. The major part of the experiments carried out in this thesis can be categorized as either experime...... mask using a directional system and a method for correcting errors in the target binary mask. The last part of the thesis, proposes a new method for objective evaluation of speech intelligibility.......The purpose of this thesis is to examine how binary masking can be used to increase intelligibility in situations where hearing impaired listeners have difficulties understanding what is being said. The major part of the experiments carried out in this thesis can be categorized as either...... experiments under ideal conditions or as experiments under more realistic conditions useful for real-life applications such as hearing aids. In the experiments under ideal conditions, the previously defined ideal binary mask is evaluated using hearing impaired listeners, and a novel binary mask -- the target...

  1. Binary Neutron Star Mergers

    Directory of Open Access Journals (Sweden)

    Joshua A. Faber

    2012-07-01

    Full Text Available We review the current status of studies of the coalescence of binary neutron star systems. We begin with a discussion of the formation channels of merging binaries and we discuss the most recent theoretical predictions for merger rates. Next, we turn to the quasi-equilibrium formalisms that are used to study binaries prior to the merger phase and to generate initial data for fully dynamical simulations. The quasi-equilibrium approximation has played a key role in developing our understanding of the physics of binary coalescence and, in particular, of the orbital instability processes that can drive binaries to merger at the end of their lifetimes. We then turn to the numerical techniques used in dynamical simulations, including relativistic formalisms, (magneto-hydrodynamics, gravitational-wave extraction techniques, and nuclear microphysics treatments. This is followed by a summary of the simulations performed across the field to date, including the most recent results from both fully relativistic and microphysically detailed simulations. Finally, we discuss the likely directions for the field as we transition from the first to the second generation of gravitational-wave interferometers and while supercomputers reach the petascale frontier.

  2. Binary Popldation Synthcsis Study

    Institute of Scientific and Technical Information of China (English)

    HAN Zhanwen

    2011-01-01

    Binary population synthesis (BPS), an approach to evolving millions of stars (including binaries) simultaneously, plays a crucial role in our understanding of stellar physics, the structure and evolution of galaxies, and cosmology. We proposed and developed a BPS approach, and used it to investigate the formation of many peculiar stars such as hot subdwarf stars, progenitors of type la supernovae, barium stars, CH stars, planetary nebulae, double white dwarfs, blue stragglers, contact binaries, etc. We also established an evolution population synthesis (EPS) model, the Yunnan Model, which takes into account binary interactions for the first time. We applied our model for the origin of hot subdwarf stars in the study of elliptical galaxies and explained their far-UV radiation.

  3. Binary and Millisecond Pulsars

    Directory of Open Access Journals (Sweden)

    Lorimer Duncan R.

    2008-11-01

    Full Text Available We review the main properties, demographics and applications of binary and millisecond radio pulsars. Our knowledge of these exciting objects has greatly increased in recent years, mainly due to successful surveys which have brought the known pulsar population to over 1800. There are now 83 binary and millisecond pulsars associated with the disk of our Galaxy, and a further 140 pulsars in 26 of the Galactic globular clusters. Recent highlights include the discovery of the young relativistic binary system PSR J1906+0746, a rejuvination in globular cluster pulsar research including growing numbers of pulsars with masses in excess of 1.5M_⊙, a precise measurement of relativistic spin precession in the double pulsar system and a Galactic millisecond pulsar in an eccentric (e = 0.44 orbit around an unevolved companion.

  4. Hypervelocity binary stars: smoking gun of massive binary black holes

    CERN Document Server

    Lu, Youjun; Lin, D N C

    2007-01-01

    The hypervelocity stars recently found in the Galactic halo are expelled from the Galactic center through interactions between binary stars and the central massive black hole or between single stars and a hypothetical massive binary black hole. In this paper, we demonstrate that binary stars can be ejected out of the Galactic center with velocities up to 10^3 km/s, while preserving their integrity, through interactions with a massive binary black hole. Binary stars are unlikely to attain such high velocities via scattering by a single massive black hole or through any other mechanisms. Based on the above theoretical prediction, we propose a search for binary systems among the hypervelocity stars. Discovery of hypervelocity binary stars, even one, is a definitive evidence of the existence of a massive binary black hole in the Galactic center.

  5. Milli-arcsecond Binaries

    CERN Document Server

    Torres, R M; Mioduszewki, A; Rodríguez, L F

    2008-01-01

    As part of an astrometric program, we have used the Very Long Baseline Array to measure the trigonometric parallax of several young stars in the Taurus and Ophiuchus star-forming regions with great accuracy. Additionally, we have obtained an unprecedented sample of high-resolution (~ 1 mas) images of several young stellar systems. These images revealed that about 70% of the stars in our sample are very tight binary stars (with separations of a few mas). Since it is highly unlikely that 70% of all stars are such tight binaries, we argue that selection effects are at work.

  6. Binary Cumulant Varieties

    CERN Document Server

    Sturmfels, Bernd

    2011-01-01

    Algebraic statistics for binary random variables is concerned with highly structured algebraic varieties in the space of 2x2x...x2-tensors. We demonstrate the advantages of representing such varieties in the coordinate system of binary cumulants. Our primary focus lies on hidden subset models. Parametrizations and implicit equations in cumulants are derived for hyperdeterminants, for secant and tangential varieties of Segre varieties, and for certain context-specific independence models. Extending work of Rota and collaborators, we explore the polynomial inequalities satisfied by cumulants.

  7. The Countermeasures for Improving the Service Life of High Manganese Steel’s Hammerhead of Hammer Crusher%提高锤式破碎机高锰钢锤头使用寿命的对策

    Institute of Scientific and Technical Information of China (English)

    李密; 姚锡严

    2013-01-01

      锤式破碎机锤头是破碎机的关键部件之一,其质量的好坏关系到使用寿命的长短,因此要求锤头不仅具有较高的硬度及耐磨损性能,还要有较高的韧性及承受冲击性能。文章分析了影响锤式破碎机高锰钢锤头破碎能力的主要因素,提出了提高锤式破碎机高锰钢锤头使用寿命的对策。%The hammerhead of hammer crusher is one of the key components of crumbling machine. Its quality is related to the length of service life, so the hammerhead not only needs high hardness and wear-resisting property, but also needs higher toughness and impact performance. The paper analyzes the major factors of affecting the breaking ability of high manganese steel's hammerhead of hammer crusher, and puts forward countermeasures for improving the service life of it.

  8. Synthesis of a bifunctional cytidine derivative and its conjugation to RNA for in vitro selection of a cytidine deaminase ribozyme

    Directory of Open Access Journals (Sweden)

    Nico Rublack

    2014-08-01

    Full Text Available Over the past 20 years, the generation of functional RNAs by in vitro selection has become a standard technique. Apart from aptamers for simple binding of defined ligands, also RNAs for catalysis of chemical reactions have been selected. In the latter case, a key step often is the conjugation of one of the two reactants to the library, requiring suitable strategies for terminal or internal RNA functionalization. With the aim of selecting a ribozyme for deamination of cytidine, we have set up a selection scheme involving the attachment of the cytidine acting as deamination substrate to the 3'-terminus of the RNAs in the library, and library immobilization. Here, we report the synthesis of a bifunctional cytidine derivative suitable for conjugation to RNA and linkage of the conjugated library to a streptavidine-coated surface. Successful conjugation of the cytidine derivative to the 3'-terminus of a model RNA is demonstrated.

  9. Formation of binary radio pulsars

    International Nuclear Information System (INIS)

    In the framework of the standard scenario of the evolution of massive binary stars a study is made of the formation of final binary systems in which at least one of the components is a neutron star. It is found that about every fortieth radio pulsar must be a member of a close binary system. This is confirmed by observations. Radio pulsars are not formed in wide binary systems, possibly because of the very slow rotation of the presupernova stars

  10. Quantum Binary Symmetric Channels

    Institute of Scientific and Technical Information of China (English)

    陈小余; 仇佩亮

    2001-01-01

    Quantum binary symmetric channels are defined via the invariance of fidelity under unitary transformations ofthe input density operators. In this definition, they not only include the most studied case of the depolarizingchannel but also other channels. We investigate the character of the latter and find the maximum of the coherentinformation to estimate the capacities of the channels.

  11. Equational binary decision diagrams

    NARCIS (Netherlands)

    Groote, J.F.; Pol, J.C. van de

    2000-01-01

    We incorporate equations in binary decision diagrams (BDD). The resulting objects are called EQ-BDDs. A straightforward notion of ordered EQ-BDDs (EQ-OBDD) is defined, and it is proved that each EQ-BDD is logically equivalent to an EQ-OBDD. Moreover, on EQ-OBDDs satisfiability and tautology checkin

  12. The Quick and the Dead: A Guide to Fast Phasing of Small Ribozyme and Riboswitch Crystal Structures.

    Science.gov (United States)

    Jenkins, Jermaine L; Wedekind, Joseph E

    2016-01-01

    Ribozymes and riboswitches are examples of non-protein-coding (nc)RNA molecules that achieve biological activity by adopting complex three-dimensional folds. Visualization of such molecules at near-atomic resolution can enhance our understanding of how chemical groups are organized spatially, thereby providing novel insight into function. This approach has its challenges, which mainly entail sample crystallization followed by the application of empirical, structure-determination methods that often include experimental "phasing" of X-ray diffraction data. A paucity of high-quality crystals or a low symmetry space group are factors that demand rapid assessment of phasing potential during an ongoing experiment in order to assure a successful outcome. Here we describe the process of evaluating the anomalous signal-to-noise as a prelude to single wavelength or multiwavelength anomalous diffraction (SAD or MAD) phasing. Test cases include an autolytic 62-mer RNA enzyme known as the hairpin ribozyme, and a 33-mer riboswitch that binds the modified guanine metabolite preQ1. The crystals were derivatized with iridium (III) hexammine and osmium (III) pentaammine triflate, respectively. Each data set was then subjected to the XPREP and SHELX programs to assess the anomalous signal-to-noise and to locate the heavy-atom substructure. Subsequent noise filtering was conducted in SHELXE or RESOLVE. The methods described are applicable to the rapid phasing of RNA X-ray diffraction data, and contrast the efficacy of in-house X-rays with those attainable from synchrotron-radiation sources in terms of the potential to plan for and execute an experimental structure determination. PMID:27665605

  13. Stabilization of ribozyme-like cis-noncoding rRNAs induces apoptotic and nonapoptotic death in lung cells.

    Science.gov (United States)

    Gee, M; Gu, Y; Fields, J R; Shiao, Y-H

    2012-01-01

    Bidirectional non-protein-coding RNAs are ubiquitously transcribed from the genome. Convergent sense and antisense transcripts may regulate each other. Here, we examined the convergent cis-noncoding rRNAs (nc-rRNAs) in A5 and E9 lung cancer models. Sense nc-rRNAs extending from rDNA intergenic region to internal transcribed spacer of around 10 kb in length were identified. nc-rRNAs in sense direction exhibited in vitro characteristics of ribozymes, namely, degradation upon incubation with MgCl(2) and stabilization by complementary oligonucleotides. Detection of endogenous cleavage-ligation products carrying internal deletion of hundreds to thousands nucleotides by massively parallel sequencing confirmed the catalytic properties. Transfection of oligonucleotides pairing with antisense nc-rRNAs stabilized both target and complementary transcripts, perturbed rRNA biogenesis, and induced massive cell death via apoptotic and/or nonapoptotic mechanisms depending on cell type and treatment. Oligonucleotides targeting cellular sense transcripts are less responsive. Spontaneously detached cells, though rare, also showed accumulation of nc-rRNAs and perturbation of rRNA biogenesis. Direct participation of nc-rRNAs in apoptotic and nonapoptotic death was demonstrated by transfection of synthetic nc-rRNAs encompassing the rDNA promoter. In sum, convergent cis-nc-rRNAs follow a feed-forward mechanism to regulate each other and rRNA biogenesis. This opens an opportunity to disrupt rRNA biogenesis, commonly upregulated in cancers, via inhibition of ribozyme-like activities in nc-rRNAs. PMID:22419110

  14. 发夹核酶的研究与应用%Study and Application of the Hairpin Ribozyme

    Institute of Scientific and Technical Information of China (English)

    姚杰; 杨克恭; 陈松森

    2001-01-01

    @@核酶(ribozyme)是既能特异识别又能特异切割小分子RNA的核酸内切酶,其本身也是RNA,主要包括发夹核酶、锤头核酶、丁肝病毒、链孢霉属VS和铅依赖性RNA,共同特点是可逆地切割底物RNA的磷酸二酯键,生成5′-OH和2′,3′-环磷酸末端。虽然催化产物相似,但它们的结构和催化机制却是很不相同的。 发夹核酶(hairpin ribozyme)发现于三种不同植物RNA病毒,即烟草环点病毒(to-bacco ringspot virus),菊苣黄色斑点病毒型(chicory yellowmottle virus type)和筷子芥花叶病毒(arabis mosaic virus)。三种发夹核酶分别是这些RNA病毒卫星RNA(satelliteRNA)的负链,它们的英文缩写分别是sTRSV、sCYMVT和sARMV,均为单链RNA,以滚环方式复制[1,2]。目前针对AIDS而人工合成的发夹核酶已成为第一个进入基因治疗临床试验阶段的核酶。

  15. Lentiviral transduction of Tar Decoy and CCR5 ribozyme into CD34+ progenitor cells and derivation of HIV-1 resistant T cells and macrophages

    Directory of Open Access Journals (Sweden)

    Rossi John

    2004-12-01

    Full Text Available Abstract Background RNA based antiviral approaches against HIV-1 are among the most promising for long-term gene therapy. These include ribozymes, aptamers (decoys, and small interfering RNAs (siRNAs. Lentiviral vectors are ideal for transduction of such inhibitory RNAs into hematopoietic stem cells due to their ability to transduce non-dividing cells and their relative refractiveness to gene silencing. The objective of this study is to introduce an HIV-1 Tar aptamer either alone or in combination with an anti-CCR5 ribozyme into CD34+ hematopoietic progenitor cells via an HIV-based lentiviral vector to derive viral resistant progeny T cells and macrophages. Results High efficiency and sustained gene transfer into CD34+ cells were achieved with lentiviral vector constructs harboring either Tar decoy or Tar decoy in combination with CCR5 ribozyme. Cells transduced with these constructs differentiated normally into T-lymphocytes in vivo in thy/liv grafts of SCID-hu mice, and into macrophages in vitro in the presence of appropriate growth factors. When challenged in vitro, the differentiated T lymphocytes and macrophages showed marked resistance against HIV-1 infection. Conclusions Viral resistant transgenic T cells and macrophages that express HIV-1 Tar aptamer either alone or in combination with an anti-CCR5 ribozyme could be obtained by lentiviral gene transduction of CD34+ progenitor cells. These results showed for the first time that expression of these anti-HIV-1 transgenes in combination do not interfere with normal thymopoiesis and thus have set the stage for their application in stem cell based gene therapy for HIV/AIDS.

  16. Non-Watson Crick base pairs might stabilize RNA structural motifs in ribozymes – A comparative study of group-I intron structures

    Indian Academy of Sciences (India)

    K Chandrasekhar; R Malathi

    2003-09-01

    In recent decades studies on RNA structure and function have gained significance due to discoveries on diversified functions of RNA. A common element for RNA secondary structure formed by series of non-Watson/Watson Crick base pairs, internal loops and pseudoknots have been the highlighting feature of recent structural determination of RNAs. The recent crystal structure of group-I introns has demonstrated that these might constitute RNA structural motifs in ribozymes, playing a crucial role in their enzymatic activity. To understand the functional significance of these non-canonical base pairs in catalytic RNA, we analysed the sequences of group-I introns from nuclear genes. The results suggest that they might form the building blocks of folded RNA motifs which are crucial to the catalytic activity of the ribozyme. The conservation of these, as observed from divergent organisms, argues for the presence of non-canonical base pairs as an important requisite for the structure and enzymatic property of ribozymes by enabling them to carry out functions such as replication, polymerase activity etc. in primordial conditions in the absence of proteins.

  17. Binary MEMS gas sensors

    International Nuclear Information System (INIS)

    A novel sensing mechanism for electrostatic MEMS that employs static bifurcation-based sensing and binary detection is demonstrated. It is implemented as an ethanol vapour sensor that exploits the static pull-in bifurcation. Sensor detection of 5 ppm of ethanol vapour in dry nitrogen, equivalent to a detectable mass of 165 pg, is experimentally demonstrated. Sensor robustness to external disturbances is also demonstrated. A closed-form expression for the sensitivity of statically detected electrostatic MEMS sensors is derived. It is shown that the sensitivity of static bifurcation-based binary electrostatic MEMS sensors represents an upper bound on the sensitivity of static detection for given sensor dimensions and material properties. (paper)

  18. FS CMa type binaries

    CERN Document Server

    Miroshnichenko, Anatoly

    2015-01-01

    FS CMa type stars is a group of ~70 objects formerly known as unclassified stars with the B[e] phenomenon. Their very strong emission-line spectra in combination with a nearly main-sequence luminosity suggest the binary nature for them. They possess strong IR excesses due to radiation of circumstellar dust that implies a compact distribution probably in a circumbinary disk. Our long-term spectroscopic monitoring revealed neutral metal lines, which always include that of Li I 6708 \\AA, in the spectra of some FS CMa objects indicating the presence of a cool star. We present a summary of our results with a first overview of FS CMa type binaries and review possible implications for the nature and evolutionary status of the entire group.

  19. Binary-Signal Recovery

    Science.gov (United States)

    Griebeler, Elmer L.

    2011-01-01

    Binary communication through long cables, opto-isolators, isolating transformers, or repeaters can become distorted in characteristic ways. The usual solution is to slow the communication rate, change to a different method, or improve the communication media. It would help if the characteristic distortions could be accommodated at the receiving end to ease the communication problem. The distortions come from loss of the high-frequency content, which adds slopes to the transitions from ones to zeroes and zeroes to ones. This weakens the definition of the ones and zeroes in the time domain. The other major distortion is the reduction of low frequency, which causes the voltage that defines the ones or zeroes to drift out of recognizable range. This development describes a method for recovering a binary data stream from a signal that has been subjected to a loss of both higher-frequency content and low-frequency content that is essential to define the difference between ones and zeroes. The method makes use of the frequency structure of the waveform created by the data stream, and then enhances the characteristics related to the data to reconstruct the binary switching pattern. A major issue is simplicity. The approach taken here is to take the first derivative of the signal and then feed it to a hysteresis switch. This is equivalent in practice to using a non-resonant band pass filter feeding a Schmitt trigger. Obviously, the derivative signal needs to be offset to halfway between the thresholds of the hysteresis switch, and amplified so that the derivatives reliably exceed the thresholds. A transition from a zero to a one is the most substantial, fastest plus movement of voltage, and therefore will create the largest plus first derivative pulse. Since the quiet state of the derivative is sitting between the hysteresis thresholds, the plus pulse exceeds the plus threshold, switching the hysteresis switch plus, which re-establishes the data zero to one transition

  20. Massive Black Hole Binary Evolution

    Directory of Open Access Journals (Sweden)

    Merritt David

    2005-11-01

    Full Text Available Coalescence of binary supermassive black holes (SBHs would constitute the strongest sources of gravitational waves to be observed by LISA. While the formation of binary SBHs during galaxy mergers is almost inevitable, coalescence requires that the separation between binary components first drop by a few orders of magnitude, due presumably to interaction of the binary with stars and gas in a galactic nucleus. This article reviews the observational evidence for binary SBHs and discusses how they would evolve. No completely convincing case of a bound, binary SBH has yet been found, although a handful of systems (e.g. interacting galaxies; remnants of galaxy mergers are now believed to contain two SBHs at projected separations of <~ 1kpc. N-body studies of binary evolution in gas-free galaxies have reached large enough particle numbers to reproduce the slow, “diffusive” refilling of the binary’s loss cone that is believed to characterize binary evolution in real galactic nuclei. While some of the results of these simulations - e.g. the binary hardening rate and eccentricity evolution - are strongly N-dependent, others - e.g. the “damage” inflicted by the binary on the nucleus - are not. Luminous early-type galaxies often exhibit depleted cores with masses of ~ 1-2 times the mass of their nuclear SBHs, consistent with the predictions of the binary model. Studies of the interaction of massive binaries with gas are still in their infancy, although much progress is expected in the near future. Binary coalescence has a large influence on the spins of SBHs, even for mass ratios as extreme as 10:1, and evidence of spin-flips may have been observed.

  1. Knocking on FXR's door: the "hammerhead"-structure series of FXR agonists - amphiphilic isoxazoles with potent in vitro and in vivo activities.

    Science.gov (United States)

    Gege, Christian; Kinzel, Olaf; Steeneck, Christoph; Schulz, Andreas; Kremoser, Claus

    2014-01-01

    The Farnesoid X Receptor (FXR) was recently validated in clinical studies using the bile acid analogue Obeticholic Acid (OCA) as an attractive drug target for liver diseases such as Primary Biliary Cirrhosis (PBC) or Non-alcoholic Steatohepatitis (NASH). OCA, however, turned out to induce cholesterol- related side effects upon prolonged treatment and it shows bile acid like pharmacokinetics. The quest for synthetic non-steroidal FXR agonists with general drug likeliness and improved pharmacokinetic and - dynamic properties has started more than a decade ago: The first non-steroidal and selective FXR agonist with decent submicromolar potency, GW4064, was patented in 1998 and published in 2000. Since then, many pharmaceutical companies have taken GW4064 as a structural template for their efforts in identifying novel patentable FXR agonists with the GW-derived trisubstituted isoxazole general structure. However, so far only one compound out of these different series has made it into the early stages of clinical development: The Px-102/Px-104 from Phenex is currently tested in a phase IIa study in patients with Non-Alcoholic Fatty Liver Disease (NAFLD). In this review we try to summarize from the patent and scientific literature the attempts to improve the GW4064 structure into different directions. Furthermore, we suggest directions for further improvements of this special class of synthetic FXR agonists which all display the typical "hammerhead"-conformation in the FXR ligand binding pocket that provides the basis for their impressive in vitro and in vivo potencies. PMID:25388536

  2. Binary optics: Trends and limitations

    Science.gov (United States)

    Farn, Michael W.; Veldkamp, Wilfrid B.

    1993-08-01

    We describe the current state of binary optics, addressing both the technology and the industry (i.e., marketplace). With respect to the technology, the two dominant aspects are optical design methods and fabrication capabilities, with the optical design problem being limited by human innovation in the search for new applications and the fabrication issue being limited by the availability of resources required to improve fabrication capabilities. With respect to the industry, the current marketplace does not favor binary optics as a separate product line and so we expect that companies whose primary purpose is the production of binary optics will not represent the bulk of binary optics production. Rather, binary optics' more natural role is as an enabling technology - a technology which will directly result in a competitive advantage in a company's other business areas - and so we expect that the majority of binary optics will be produced for internal use.

  3. Binaries in the Kuiper Belt

    CERN Document Server

    Noll, K S; Chiang, E I; Margot, J L; Kern, S D; Noll, Keith S.; Grundy, William M.; Chiang, Eugene I.; Margot, Jean-Luc; Kern, Susan D.

    2007-01-01

    Binaries have played a crucial role many times in the history of modern astronomy and are doing so again in the rapidly evolving exploration of the Kuiper Belt. The large fraction of transneptunian objects that are binary or multiple, 48 such systems are now known, has been an unanticipated windfall. Separations and relative magnitudes measured in discovery images give important information on the statistical properties of the binary population that can be related to competing models of binary formation. Orbits, derived for 13 systems, provide a determination of the system mass. Masses can be used to derive densities and albedos when an independent size measurement is available. Angular momenta and relative sizes of the majority of binaries are consistent with formation by dynamical capture. The small satellites of the largest transneptunian objects, in contrast, are more likely formed from collisions. Correlations of the fraction of binaries with different dynamical populations or with other physical variabl...

  4. Biclustering Sparse Binary Genomic Data

    OpenAIRE

    Van Uitert, M.; Meuleman, W.; Wessels, L. F. A.

    2008-01-01

    Genomic datasets often consist of large, binary, sparse data matrices. In such a dataset, one is often interested in finding contiguous blocks that (mostly) contain ones. This is a biclustering problem, and while many algorithms have been proposed to deal with gene expression data, only two algorithms have been proposed that specifically deal with binary matrices. None of the gene expression biclustering algorithms can handle the large number of zeros in sparse binary matrices. The two propos...

  5. Rotational mixing in close binaries

    CERN Document Server

    de Mink, S E; Langer, N; Yoon, S -Ch; Brott, I; Glebbeek, E; Verkoulen, M; Pols, O R

    2008-01-01

    Rotational mixing is a very important but uncertain process in the evolution of massive stars. We propose to use close binaries to test its efficiency. Based on rotating single stellar models we predict nitrogen surface enhancements for tidally locked binaries. Furthermore we demonstrate the possibility of a new evolutionary scenario for very massive (M > 40 solar mass) close (P < 3 days) binaries: Case M, in which mixing is so efficient that the stars evolve quasi-chemically homogeneously, stay compact and avoid any Roche-lobe overflow, leading to very close (double) WR binaries.

  6. Evolution of Close Binary Systems

    Energy Technology Data Exchange (ETDEWEB)

    Yakut, K; Eggleton, P

    2005-01-24

    We collected data on the masses, radii, etc. of three classes of close binary stars: low-temperature contact binaries (LTCBs), near-contact binaries (NCBs), and detached close binaries (DCBs). They restrict themselves to systems where (1) both components are, at least arguably, near the Main Sequence, (2) the periods are less than a day, and (3) there is both spectroscopic and photometric analysis leading to reasonably reliable data. They discuss the possible evolutionary connections between these three classes, emphasizing the roles played by mass loss and angular momentum loss in rapidly-rotating cool stars.

  7. Low autocorrelation binary sequences

    Science.gov (United States)

    Packebusch, Tom; Mertens, Stephan

    2016-04-01

    Binary sequences with minimal autocorrelations have applications in communication engineering, mathematics and computer science. In statistical physics they appear as groundstates of the Bernasconi model. Finding these sequences is a notoriously hard problem, that so far can be solved only by exhaustive search. We review recent algorithms and present a new algorithm that finds optimal sequences of length N in time O(N {1.73}N). We computed all optimal sequences for N≤slant 66 and all optimal skewsymmetric sequences for N≤slant 119.

  8. Microlensing modulation by binaries

    CERN Document Server

    Dubath, F; Durrer, R; Dubath, Florian; Gasparini, Maria Alice; Durrer, Ruth

    2006-01-01

    We compute the effect of the lens quadrupole on microlensing. The time dependence of the quadrupole can lead to specific modulations of the amplification signal. We study especially binary system lenses in our galaxy. The modulation is observable if the rotation period of the system is smaller than the time over which the amplification is significant and if the impact parameter of the passing light ray is sufficiently close to the Einstein radius so that the amplification is very large. Observations of this modulation can reveal important information on the quadrupole and thus on the gravitational radiation emitted by the lens.

  9. Modeling Binary Neutron Stars

    Science.gov (United States)

    Park, Conner; Read, Jocelyn; Flynn, Eric; Lockett-Ruiz, Veronica

    2016-03-01

    Gravitational waves, predicted by Einstein's Theory of Relativity, are a new frontier in astronomical observation we can use to observe phenomena in the universe. Laser Interferometer Gravitational wave Observatory (LIGO) is currently searching for gravitational wave signals, and requires accurate predictions in order to best extract astronomical signals from all other sources of fluctuations. The focus of my research is in increasing the accuracy of Post-Newtonian models of binary neutron star coalescence to match the computationally expensive Numerical models. Numerical simulations can take months to compute a couple of milliseconds of signal whereas the Post-Newtonian can generate similar signals in seconds. However the Post-Newtonian model is an approximation, e.g. the Taylor T4 Post-Newtonian model assumes that the two bodies in the binary neutron star system are point charges. To increase the effectiveness of the approximation, I added in tidal effects, resonance frequencies, and a windowing function. Using these observed effects from simulations significantly increases the Post-Newtonian model's similarity to the Numerical signal.

  10. Relativistic Binaries in Globular Clusters

    Directory of Open Access Journals (Sweden)

    Benacquista Matthew J.

    2006-02-01

    Full Text Available The galactic population of globular clusters are old, dense star systems, with a typical cluster containing 10^4 - 10^7 stars. As an old population of stars, globular clusters contain many collapsed and degenerate objects. As a dense population of stars, globular clusters are the scene of many interesting close dynamical interactions between stars. These dynamical interactions can alter the evolution of individual stars and can produce tight binary systems containing one or two compact objects. In this review, we discuss the theoretical models of globular cluster evolution and binary evolution, techniques for simulating this evolution which lead to relativistic binaries, and current and possible future observational evidence for this population. Globular cluster evolution will focus on the properties that boost the production of hard binary systems and on the tidal interactions of the galaxy with the cluster, which tend to alter the structure of the globular cluster with time. The interaction of the components of hard binary systems alters the evolution of both bodies and can lead to exotic objects. Direct N-body integrations and Fokker-Planck simulations of the evolution of globular clusters that incorporate tidal interactions and lead to predictions of relativistic binary populations are also discussed. We discuss the current observational evidence for cataclysmic variables, millisecond pulsars, and low-mass X-ray binaries as well as possible future detection of relativistic binaries with gravitational radiation.

  11. PERIODIC COMPLEMENTARY BINARY SEQUENCE PAIRS

    Institute of Scientific and Technical Information of China (English)

    XuChengqian; ZhaoXiaoqun

    2002-01-01

    A new set of binary sequences-Periodic Complementary Binary Sequence Pair (PCSP)is proposed .A new class of block design-Difference Family Pair (DFP)is also proposed .The relationship between PCSP and DFP,the properties and exising conditions of PCSP and the recursive constructions for PCSP are given.

  12. PERIODIC COMPLEMENTARY BINARY SEQUENCE PAIRS

    Institute of Scientific and Technical Information of China (English)

    Xu Chengqian; Zhao Xiaoqun

    2002-01-01

    A new set of binary sequences-Periodic Complementary Binary Sequence Pair (PCSP) is proposed. A new class of block design-Difference Family Pair (DFP) is also proposed.The relationship between PCSP and DFP, the properties and existing conditions of PCSP and the recursive constructions for PCSP are given.

  13. Relativistic Binaries in Globular Clusters

    Directory of Open Access Journals (Sweden)

    Matthew J. Benacquista

    2013-03-01

    Full Text Available Galactic globular clusters are old, dense star systems typically containing 10^4 – 10^6 stars. As an old population of stars, globular clusters contain many collapsed and degenerate objects. As a dense population of stars, globular clusters are the scene of many interesting close dynamical interactions between stars. These dynamical interactions can alter the evolution of individual stars and can produce tight binary systems containing one or two compact objects. In this review, we discuss theoretical models of globular cluster evolution and binary evolution, techniques for simulating this evolution that leads to relativistic binaries, and current and possible future observational evidence for this population. Our discussion of globular cluster evolution will focus on the processes that boost the production of tight binary systems and the subsequent interaction of these binaries that can alter the properties of both bodies and can lead to exotic objects. Direct N-body integrations and Fokker–Planck simulations of the evolution of globular clusters that incorporate tidal interactions and lead to predictions of relativistic binary populations are also discussed. We discuss the current observational evidence for cataclysmic variables, millisecond pulsars, and low-mass X-ray binaries as well as possible future detection of relativistic binaries with gravitational radiation.

  14. Signature Visualization of Software Binaries

    Energy Technology Data Exchange (ETDEWEB)

    Panas, T

    2008-07-01

    In this paper we present work on the visualization of software binaries. In particular, we utilize ROSE, an open source compiler infrastructure, to pre-process software binaries, and we apply a landscape metaphor to visualize the signature of each binary (malware). We define the signature of a binary as a metric-based layout of the functions contained in the binary. In our initial experiment, we visualize the signatures of a series of computer worms that all originate from the same line. These visualizations are useful for a number of reasons. First, the images reveal how the archetype has evolved over a series of versions of one worm. Second, one can see the distinct changes between version. This allows the viewer to form conclusions about the development cycle of a particular worm.

  15. Planets in evolved binary systems

    CERN Document Server

    Perets, Hagai B

    2010-01-01

    Exoplanets are typically thought to form in protoplanetary disks left over from protostellar disk of their newly formed host star. However, additional planetary formation and evolution routes may exist in old evolved binary systems. Here we discuss the implications of binary stellar evolution on planetary systems. In these binary systems stellar evolution could lead to the formation of symbiotic stars, where mass is lost from one star and could be transferred to its binary companion, and may form an accretion disk around it. This raises the possibility that such a disk could provide the necessary environment for the formation of a new, second generation of planets in both circumstellar or circumbinary configurations. Pre-existing first generation planets surviving the post-MS evolution of such systems would be dynamically effected by the mass loss in the systems and may also interact with the newly formed disk. Second generation planetary systems should be typically found in white dwarf binary systems, and ma...

  16. Pairing mechanisms for binary stars

    CERN Document Server

    Kouwenhoven, M B N; Goodwin, S P; Zwart, S F Portegies; Kaper, L; 10.1002/asna.200811061

    2008-01-01

    Knowledge of the binary population in stellar groupings provides important information about the outcome of the star forming process in different environments. Binarity is also a key ingredient in stellar population studies and is a prerequisite to calibrate the binary evolution channels. In these proceedings we present an overview of several commonly used methods to pair individual stars into binary systems, which we refer to as the pairing function. Many pairing functions are frequently used by observers and computational astronomers, either for the mathematical convenience, or because they roughly describe the expected outcome of the star forming process. We discuss the consequences of each pairing function for the interpretation of observations and numerical simulations. The binary fraction and mass ratio distribution generally depend strongly on the selection of the range in primary spectral type in a sample. These quantities, when derived from a binary survey with a mass-limited sample of target stars, ...

  17. Towards Physarum Binary Adders

    CERN Document Server

    Jones, Jeff; 10.1016/j.biosystems.2010.04.005

    2010-01-01

    Plasmodium of \\emph{Physarum polycephalum} is a single cell visible by unaided eye. The plasmodium's foraging behaviour is interpreted in terms of computation. Input data is a configuration of nutrients, result of computation is a network of plasmodium's cytoplasmic tubes spanning sources of nutrients. Tsuda et al (2004) experimentally demonstrated that basic logical gates can be implemented in foraging behaviour of the plasmodium. We simplify the original designs of the gates and show --- in computer models --- that the plasmodium is capable for computation of two-input two-output gate $ \\to $ and three-input two-output $ \\to $. We assemble the gates in a binary one-bit adder and demonstrate validity of the design using computer simulation.

  18. 核酶基因抑制肝癌细胞低氧诱导因子-1α表达的实验研究%Inhibitory effects of hammerhead ribozyme on expression of hypoxia inducible factor 1α in hepatocarcinoma cells

    Institute of Scientific and Technical Information of China (English)

    李东恩; 于如同

    2007-01-01

    目的 探讨靶向HIF-1α核酶基因对肝癌细胞HIF-1α表达的调控.方法 采用脂质体介导的方法,将靶向HIF-1α核酶基因真核表达载体转染肝癌细胞Hep3B2,并予低氧条件诱导.于转染后48 h采用Western Blotting检测Hep382细胞中HIF-1α蛋白的表达水平;荧光报告基因方法检测HIF-1转录活性.结果 Hep382细胞低氧诱导后,HIF-1α蛋白表达水平、HIF-1转录活性增高(1.0±0.02),转染核酶基因400 μmol/L后48 h,Hep382细胞低氧诱导的HIF-1α蛋白表达水平明显下降,HIF-1转录活性下调(0.12±0.025,P<0.05).结论 核酶基因可特异性抑制低氧诱导的肝癌细胞HIF-1α表达,降低其转录活性.

  19. The study of hammerhead ribozyme inhibiting the expression of hypoxia inducible factor-1α in hepatocarcinoma cells%核酶基因抑制肝癌细胞低氧诱导因子-1α表达的实验研究

    Institute of Scientific and Technical Information of China (English)

    李东恩; 于如同

    2007-01-01

    目的 探讨靶向低氧诱导因子-1α(hypoxia inducible factor-1α,HIF-1α)核酶基因对肝癌细胞HIF-1α表达的调控.方法 采用脂质体介导的方法,将靶向HIF-1α核酶基因真核表达载体转染肝癌细胞Hep3B2,并予低氧条件诱导.于转染后48 h采用Western Blotting检测Hep3B2细胞中HIF-1α蛋白的表达水平;荧光报告基因方法检测HIF-1转录活性.结果 Hep3B2细胞低氧诱导后,HIF-1α蛋白表达水平、HIF-1转录活性增高(1.0±0.02),转染核酶基因400 μmol/L后48 h,Hep3B2细胞低氧诱导的HIF-1α蛋白表达水平明显下降,HIF-1转录活性下调(0.12±0.025,P<0.05).结论 核酶基因可特异性抑制低氧诱导的肝癌细胞HIF-1α的表达,降低其转录活性.

  20. Stability of binaries. Part II: Rubble-pile binaries

    Science.gov (United States)

    Sharma, Ishan

    2016-10-01

    We consider the stability of the binary asteroids whose members are granular aggregates held together by self-gravity alone. A binary is said to be stable whenever both its members are orbitally and structurally stable to both orbital and structural perturbations. To this end, we extend the stability analysis of Sharma (Sharma [2015] Icarus, 258, 438-453), that is applicable to binaries with rigid members, to the case of binary systems with rubble members. We employ volume averaging (Sharma et al. [2009] Icarus, 200, 304-322), which was inspired by past work on elastic/fluid, rotating and gravitating ellipsoids. This technique has shown promise when applied to rubble-pile ellipsoids, but requires further work to settle some of its underlying assumptions. The stability test is finally applied to some suspected binary systems, viz., 216 Kleopatra, 624 Hektor and 90 Antiope. We also see that equilibrated binaries that are close to mobilizing their maximum friction can sustain only a narrow range of shapes and, generally, congruent shapes are preferred.

  1. Simulating relativistic binaries with Whisky

    Science.gov (United States)

    Baiotti, L.

    We report about our first tests and results in simulating the last phase of the coalescence and the merger of binary relativistic stars. The simulations were performed using our code Whisky and mesh refinement through the Carpet driver.

  2. Binary nucleation beyond capillarity approximation

    NARCIS (Netherlands)

    Kalikmanov, V.I.

    2010-01-01

    Large discrepancies between binary classical nucleation theory (BCNT) and experiments result from adsorption effects and inability of BCNT, based on the phenomenological capillarity approximation, to treat small clusters. We propose a model aimed at eliminating both of these deficiencies. Adsorption

  3. Magnetic braking in ultracompact binaries

    CERN Document Server

    Farmer, Alison

    2010-01-01

    Angular momentum loss in ultracompact binaries, such as the AM Canum Venaticorum stars, is usually assumed to be due entirely to gravitational radiation. Motivated by the outflows observed in ultracompact binaries, we investigate whether magnetically coupled winds could in fact lead to substantial additional angular momentum losses. We remark that the scaling relations often invoked for the relative importance of gravitational and magnetic braking do not apply, and instead use simple non-empirical expressions for the braking rates. In order to remove significant angular momentum, the wind must be tied to field lines anchored in one of the binary's component stars; uncertainties remain as to the driving mechanism for such a wind. In the case of white dwarf accretors, we find that magnetic braking can potentially remove angular momentum on comparable or even shorter timescales than gravitational waves over a large range in orbital period. We present such a solution for the 17-minute binary AM CVn itself which a...

  4. Discs in misaligned binary systems

    CERN Document Server

    Rawiraswattana, Krisada; Goodwin, Simon P

    2016-01-01

    We perform SPH simulations to study precession and changes in alignment between the circumprimary disc and the binary orbit in misaligned binary systems. We find that the precession process can be described by the rigid-disc approximation, where the disc is considered as a rigid body interacting with the binary companion only gravitationally. Precession also causes change in alignment between the rotational axis of the disc and the spin axis of the primary star. This type of alignment is of great important for explaining the origin of spin-orbit misaligned planetary systems. However, we find that the rigid-disc approximation fails to describe changes in alignment between the disc and the binary orbit. This is because the alignment process is a consequence of interactions that involve the fluidity of the disc, such as the tidal interaction and the encounter interaction. Furthermore, simulation results show that there are not only alignment processes, which bring the components towards alignment, but also anti-...

  5. Cryptography with DNA binary strands.

    Science.gov (United States)

    Leier, A; Richter, C; Banzhaf, W; Rauhe, H

    2000-06-01

    Biotechnological methods can be used for cryptography. Here two different cryptographic approaches based on DNA binary strands are shown. The first approach shows how DNA binary strands can be used for steganography, a technique of encryption by information hiding, to provide rapid encryption and decryption. It is shown that DNA steganography based on DNA binary strands is secure under the assumption that an interceptor has the same technological capabilities as sender and receiver of encrypted messages. The second approach shown here is based on steganography and a method of graphical subtraction of binary gel-images. It can be used to constitute a molecular checksum and can be combined with the first approach to support encryption. DNA cryptography might become of practical relevance in the context of labelling organic and inorganic materials with DNA 'barcodes'.

  6. A ribozyme transcribed by a ribozyme

    DEFF Research Database (Denmark)

    Bentin, Thomas

    2011-01-01

    Prominent current ideas on how life emerged on Earth include an RNA world hypothesis in which RNA performed informational as well as catalytic functions in the absence of both DNA and protein. Demonstration of a self-replicative system based on ribonucleic acid polymers as both information carrie...

  7. AN IMPROVED DESIGN OF REVERSIBLE BINARY TO BINARY CODED DECIMAL CONVERTER FOR BINARY CODED DECIMAL MULTIPLICATION

    Directory of Open Access Journals (Sweden)

    Praveena Murugesan

    2014-01-01

    Full Text Available Reversible logic gates under ideal conditions produce zero power dissipation. This factor highlights the usage of these gates in optical computing, low power CMOS design, quantum optics and quantum computing. The growth of decimal arithmetic in various applications as stressed the need to propose the study on reversible binary to BCD converter which plays a greater role in decimal multiplication for providing faster results. The different parameters such as gate count,garbage output and constant input are more optimized in the proposed fixed bit binary to binary coded decimal converter than the existing design.

  8. Transient Black Hole Binaries

    CERN Document Server

    Belloni, T M

    2016-01-01

    The last two decades have seen a great improvement in our understand- ing of the complex phenomenology observed in transient black-hole binary systems, especially thanks to the activity of the Rossi X-Ray Timing Explorer satellite, com- plemented by observations from many other X-ray observatories and ground-based radio, optical and infrared facilities. Accretion alone cannot describe accurately the intricate behavior associated with black-hole transients and it is now clear that the role played by different kinds of (often massive) outflows seen at different phases of the outburst evolution of these systems is as fundamental as the one played by the accretion process itself. The spectral-timing states originally identified in the X-rays and fundamentally based on the observed effect of accretion, have acquired new importance as they now allow to describe within a coherent picture the phenomenology observed at other wave- length, where the effects of ejection processes are most evident. With a particular focu...

  9. Binary nucleation beyond capillarity approximation

    OpenAIRE

    Kalikmanov, V.I.

    2010-01-01

    Large discrepancies between binary classical nucleation theory (BCNT) and experiments result from adsorption effects and inability of BCNT, based on the phenomenological capillarity approximation, to treat small clusters. We propose a model aimed at eliminating both of these deficiencies. Adsorption is taken into account within Gibbsian approximation. Binary clusters are treated by means of statistical-mechanical considerations: tracing out the molecular degrees of freedom of the more volatil...

  10. Clostridium difficile binary toxin CDT

    OpenAIRE

    Gerding, Dale N.; Johnson, Stuart; Rupnik, Maja; Aktories, Klaus

    2013-01-01

    Binary toxin (CDT) is frequently observed in Clostridium difficile strains associated with increased severity of C. difficile infection (CDI). CDT belongs to the family of binary ADP-ribosylating toxins consisting of two separate toxin components: CDTa, the enzymatic ADP-ribosyltransferase which modifies actin, and CDTb which binds to host cells and translocates CDTa into the cytosol. CDTb is activated by serine proteases and binds to lipolysis stimulated lipoprotein receptor. ADP-ribosylatio...

  11. Coalescence of Binary Neutron Stars

    OpenAIRE

    Oohara, Ken-ichi; Namamura, Takashi

    1996-01-01

    The most important sources for laser-interferometric gravitational-wave detectors like LIGO or VIRGO are catastrophic events such as coalescence of a neutron-star binary. The final phase, or the last three milliseconds, of coalescence is considered. We describe results of numerical simulations of coalescing binary neutron stars using Newtonian and post-Newtonian hydrodynamics code and then discuss recent development of our 3D GR code.

  12. Coevolution of Binaries and Gaseous Discs

    CERN Document Server

    Fleming, David P

    2016-01-01

    The recent discoveries of circumbinary planets by $\\it Kepler$ raise questions for contemporary planet formation models. Understanding how these planets form requires characterizing their formation environment, the circumbinary protoplanetary disc, and how the disc and binary interact and change as a result. The central binary excites resonances in the surrounding protoplanetary disc that drive evolution in both the binary orbital elements and in the disc. To probe how these interactions impact binary eccentricity and disc structure evolution, N-body smooth particle hydrodynamics (SPH) simulations of gaseous protoplanetary discs surrounding binaries based on Kepler 38 were run for $10^4$ binary periods for several initial binary eccentricities. We find that nearly circular binaries weakly couple to the disc via a parametric instability and excite disc eccentricity growth. Eccentric binaries strongly couple to the disc causing eccentricity growth for both the disc and binary. Discs around sufficiently eccentri...

  13. Selective reversal of drug resistance in drug-resistant lung adenocarcinoma cells by tumor-specific expression of MDR1 ribozyme gene mediated by retrovirus

    Institute of Scientific and Technical Information of China (English)

    高振强; 高志萍; 刘喜富; 张涛

    1997-01-01

    According to the fact that CEA gene expressed only in lung adenocarcinoma and not in normal lung cells, a retroviral vector (pCEAMR) was constructed which carried the CEA promoter coupled to MDR1 ribozyme gene. pCEAMR was introduced into drug-resistant lung adenocarcinoma cells GAOK with CEA expression and HeLaK without CEA expression; the expression of pCEAMR and drug resistance in the infected cells were analyzed in vitro and in vivo ; pCEAMR expressed only in CEA-producing GAOK cells and not in non-CEA-producing HeLa cells. The drug resistance to doxorubicin (DOX) decreased 91.5% in the infected GAOK cells and did not change in the infected HeLa cells. In nude mice, DOX could obviously inhibit the growth of the infected GAOK tumors, and had no effect on the growth of the infected HeLa cells. These results indicated that MDR1 ribozyme gene regulated by CEA promoter expressed only in human adenocarcinoma cells and reversed their drug resistance selectively. This gene-drug therapy might serve as an effe

  14. How the discovery of ribozymes cast RNA in the roles of both chicken and egg in origin-of-life theories.

    Science.gov (United States)

    Sankaran, Neeraja

    2012-12-01

    Scientific theories about the origin-of-life theories have historically been characterized by the chicken-and-egg problem of which essential aspect of life was the first to appear, replication or self-sustenance. By the 1950s the question was cast in molecular terms and DNA and proteins had come to represent the carriers of the two functions. Meanwhile, RNA, the other nucleic acid, had played a capricious role in origin theories. Because it contained building blocks very similar to DNA, biologists recognized early that RNA could store information in its linear sequences. With the discovery in the 1980s that RNA molecules were capable of biological catalysis, a function hitherto ascribed to proteins alone, RNA took on the role of the single entity that could act as both chicken and egg. Within a few years of the discovery of these catalytic RNAs (ribozymes) scientists had formulated an RNA World hypothesis that posited an early phase in the evolution of life where all key functions were performed by RNA molecules. This paper traces the history the role of RNA in origin-of-life theories with a focus on how the discovery of ribozymes influenced the discourse.

  15. Unsupervised learning of binary vectors

    Science.gov (United States)

    Copelli Lopes da Silva, Mauro

    In this thesis, unsupervised learning of binary vectors from data is studied using methods from Statistical Mechanics of disordered systems. In the model, data vectors are distributed according to a single symmetry-breaking direction. The aim of unsupervised learning is to provide a good approximation to this direction. The difference with respect to previous studies is the knowledge that this preferential direction has binary components. It is shown that sampling from the posterior distribution (Gibbs learning) leads, for general smooth distributions, to an exponentially fast approach to perfect learning in the asymptotic limit of large number of examples. If the distribution is non-smooth, then first order phase transitions to perfect learning are expected. In the limit of poor performance, a second order phase transition ("retarded learning") is predicted to occur if the data distribution is not biased. Using concepts from Bayesian inference, the center of mass of the Gibbs ensemble is shown to have maximal average (Bayes-optimal) performance. This upper bound for continuous vectors is extended to a discrete space, resulting in the clipped center of mass of the Gibbs ensemble having maximal average performance among the binary vectors. To calculate the performance of this best binary vector, the geometric properties of the center of mass of binary vectors are studied. The surprising result is found that the center of mass of infinite binary vectors which obey some simple constraints, is again a binary vector. When disorder is taken into account in the calculation, however, a vector with continuous components is obtained. The performance of the best binary vector is calculated and shown to always lie above that of Gibbs learning and below the Bayes-optimal performance. Making use of a variational approach under the replica symmetric ansatz, an optimal potential is constructed in the limits of zero temperature and mutual overlap 1. Minimization of this potential

  16. Binary Encodings of Non-binary Constraint Satisfaction Problems: Algorithms and Experimental Results

    CERN Document Server

    Samaras, N; 10.1613/jair.1776

    2011-01-01

    A non-binary Constraint Satisfaction Problem (CSP) can be solved directly using extended versions of binary techniques. Alternatively, the non-binary problem can be translated into an equivalent binary one. In this case, it is generally accepted that the translated problem can be solved by applying well-established techniques for binary CSPs. In this paper we evaluate the applicability of the latter approach. We demonstrate that the use of standard techniques for binary CSPs in the encodings of non-binary problems is problematic and results in models that are very rarely competitive with the non-binary representation. To overcome this, we propose specialized arc consistency and search algorithms for binary encodings, and we evaluate them theoretically and empirically. We consider three binary representations; the hidden variable encoding, the dual encoding, and the double encoding. Theoretical and empirical results show that, for certain classes of non-binary constraints, binary encodings are a competitive op...

  17. Binaries and Globular Cluster Dynamics

    CERN Document Server

    Rasio, F A; Joshi, K J; Rasio, Frederic A.; Fregeau, John M.; Joshi, Kriten J.

    2001-01-01

    We summarize the results of recent theoretical work on the dynamical evolution of globular clusters containing primordial binaries. Even a very small initial binary fraction (e.g., 10%) can play a key role in supporting a cluster against gravothermal collapse for many relaxation times. Inelastic encounters between binaries and single stars or other binaries provide a very significant energy source for the cluster. These dynamical interactions also lead to the production of large numbers of exotic systems such as ultracompact X-ray binaries, recycled radio pulsars, double degenerate systems, and blue stragglers. Our work is based on a new parallel supercomputer code implementing Henon's Monte Carlo method for simulating the dynamical evolution of dense stellar systems in the Fokker-Planck approximation. This new code allows us to calculate very accurately the evolution of a cluster containing a realistic number of stars (N ~ 10^5 - 10^6) in typically a few hours to a few days of computing time. The discrete, s...

  18. Marangoni Convection in Binary Mixtures

    CERN Document Server

    Zhang, J; Oron, A; Behringer, Robert P.; Oron, Alexander; Zhang, Jie

    2006-01-01

    Marangoni instabilities in binary mixtures are different from those in pure liquids. In contrast to a large amount of experimental work on Marangoni convection in pure liquids, such experiments in binary mixtures are not available in the literature, to our knowledge. Using binary mixtures of sodium chloride/water, we have systematically investigated the pattern formation for a set of substrate temperatures and solute concentrations in an open system. The flow patterns evolve with time, driven by surface-tension fluctuations due to evaporation and the Soret effect, while the air-liquid interface does not deform. A shadowgraph method is used to follow the pattern formation in time. The patterns are mainly composed of polygons and rolls. The mean pattern size first decreases slightly, and then gradually increases during the evolution. Evaporation affects the pattern formation mainly at the early stage and the local evaporation rate tends to become spatially uniform at the film surface. The Soret effect becomes i...

  19. Asymmetric distances for binary embeddings.

    Science.gov (United States)

    Gordo, Albert; Perronnin, Florent; Gong, Yunchao; Lazebnik, Svetlana

    2014-01-01

    In large-scale query-by-example retrieval, embedding image signatures in a binary space offers two benefits: data compression and search efficiency. While most embedding algorithms binarize both query and database signatures, it has been noted that this is not strictly a requirement. Indeed, asymmetric schemes that binarize the database signatures but not the query still enjoy the same two benefits but may provide superior accuracy. In this work, we propose two general asymmetric distances that are applicable to a wide variety of embedding techniques including locality sensitive hashing (LSH), locality sensitive binary codes (LSBC), spectral hashing (SH), PCA embedding (PCAE), PCAE with random rotations (PCAE-RR), and PCAE with iterative quantization (PCAE-ITQ). We experiment on four public benchmarks containing up to 1M images and show that the proposed asymmetric distances consistently lead to large improvements over the symmetric Hamming distance for all binary embedding techniques.

  20. Black Hole Binaries in Quiescence

    CERN Document Server

    Bailyn, Charles D

    2016-01-01

    I discuss some of what is known and unknown about the behavior of black hole binary systems in the quiescent accretion state. Quiescence is important for several reasons: 1) the dominance of the companion star in the optical and IR wavelengths allows the binary parameters to be robustly determined - as an example, we argue that the longer proposed distance to the X-ray source GRO J1655-40 is correct; 2) quiescence represents the limiting case of an extremely low accretion rate, in which both accretion and jets can be observed; 3) understanding the evolution and duration of the quiescent state is a key factor in determining the overall demographics of X-rary binaries, which has taken on a new importance in the era of gravitational wave astronomy.

  1. Transfection with the ribozyme targeting HPVE6 mRNA results in growth inhibition of E6-expressing cervical carcinoma cells

    Institute of Scientific and Technical Information of China (English)

    郑燕芳; 张积仁

    2003-01-01

    Objective: To acquire a ribozyme against the E6 gene of human papillomaviruses type 16 (HPV16E6) and investigate its effects on the phenotypes and gene expression of cervical cancer cell line. Methods: Anti-HPV16E6 ribozyme (HRz) was designed by computer programs and its activity identified by cleavage experiment in vitro before its transfection via lipofectin into CaSKi cells with the empty eucaryotic expression plasmid transfection of the cells also performed, the resultant cells designated as CaSKi-R, CaSKi-P respectively. The morphology and the soft agar forming ability were studied in CaSKi cells and the transfected cells, and the expression of E6, proliferating cell nuclear antigen (PCNA) and C-erbB-2 genes assayed by flow cytometry. The tumorgenicity of each cell line was evaluated in nude mice receiving inoculations of CaSKi, CaSKi-R and CaSKi-P cells separately, while in one group, both CaSKi and CaSKi-R cells were inoculated on different sides of the mice. Results: HRz was able to cleave HPV16E6 mRNA in a site-specific manner and could be expressed stably in transfected CaSKi cells. Northern blot analysis showed that E6 mRNA was less in CaSKi-R than in CaSKi cells, and no significant difference in the morphology and growth rate was observed between CaSKi and CaSKi-P cells, but the growth rate CaSKi-R was lowered. The colony-forming rate of CaSKi-P in soft agar was similar to that of CaSKi cells, while that of CaSKi-R was decreased. Flow cytometry showed that anti-HPV16E6 ribozyme reduced the expression of E6, PCNA and C-erbB-2 genes in CaSKi-R cells, but not in CaSKi-P cells. The tumorgenicity of CaSKi-R in nude mice was decreased compared with CaSKi cells. Conclusion: HRz can partially reverse the malignant phenotype of CaSKi cells, possibly due to decreased E6 gene expression, and the consequent decrease of PCNA and C-erbB-2 gene expressions.

  2. Statistical Study of Visual Binaries

    CERN Document Server

    Abdel-Rahman, H I; Elsanhoury, W H

    2016-01-01

    In this paper, some statistical distributions of wide pairs included in Double Star Catalogue are investigated. Frequency distributions and testing hypothesis are derived for some basic parameters of visual binaries. The results reached indicate that, it was found that the magnitude difference is distributed exponentially, which means that the majority of the component of the selected systems is of the same spectral type. The distribution of the mass ratios is concentrated about 0.7 which agree with Salpeter mass function. The distribution of the linear separation appears to be exponentially, which contradict with previous studies for close binaries.

  3. Coalescing binaries and Doppler experiments

    OpenAIRE

    Vecchio, A.; Bertotti, B.; Iess, L.

    1997-01-01

    We discuss the sensitivity of the CASSINI experiments to gravitational waves emitted by the in-spiral of compact binaries. We show that the maximum distance reachable by the instrument is $\\sim 100$ Mpc. In particular, CASSINI can detect massive black hole binaries with chirp mass $\\simgt 10^6 \\Ms$ in the Virgo Cluster with signal-to-noise ratio between 5 and 30 and possible compact objects of mass $\\simgt 30 \\Ms$ orbiting the massive black hole that our Galactic Centre is likely to harbour.

  4. Kepler Eclipsing Binaries with Stellar Companions

    CERN Document Server

    Gies, D R; Guo, Z; Lester, K V; Orosz, J A; Peters, G J

    2015-01-01

    Many short-period binary stars have distant orbiting companions that have played a role in driving the binary components into close separation. Indirect detection of a tertiary star is possible by measuring apparent changes in eclipse times of eclipsing binaries as the binary orbits the common center of mass. Here we present an analysis of the eclipse timings of 41 eclipsing binaries observed throughout the NASA Kepler mission of long duration and precise photometry. This subset of binaries is characterized by relatively deep and frequent eclipses of both stellar components. We present preliminary orbital elements for seven probable triple stars among this sample, and we discuss apparent period changes in seven additional eclipsing binaries that may be related to motion about a tertiary in a long period orbit. The results will be used in ongoing investigations of the spectra and light curves of these binaries for further evidence of the presence of third stars.

  5. Hydrodynamic Simulations of Contact Binaries

    Science.gov (United States)

    Kadam, Kundan; Clayton, Geoffrey C.; Frank, Juhan; Marcello, Dominic; Motl, Patrick M.; Staff, Jan E.

    2015-01-01

    The motivation for our project is the peculiar case of the 'red nova" V1309 Sco which erupted in September 2008. The progenitor was, in fact, a contact binary system. We are developing a simulation of contact binaries, so that their formation, structural, and merger properties could be studied using hydrodynamics codes. The observed transient event was the disruption of the secondary star by the primary, and their subsequent merger into one star; hence to replicate this behavior, we need a core-envelope structure for both the stars. We achieve this using a combination of Self Consistant Field (SCF) technique and composite polytropes, also known as bipolytropes. So far we have been able to generate close binaries with various mass ratios. Another consequence of using bipolytropes is that according to theoretical calculations, the radius of a star should expand when the core mass fraction exceeds a critical value, resulting in interesting consequences in a binary system. We present some initial results of these simulations.

  6. Discs in misaligned binary systems

    Science.gov (United States)

    Rawiraswattana, Krisada; Hubber, David A.; Goodwin, Simon P.

    2016-08-01

    We perform SPH simulations to study precession and changes in alignment between the circumprimary disc and the binary orbit in misaligned binary systems. We find that the precession process can be described by the rigid-disc approximation, where the disc is considered as a rigid body interacting with the binary companion only gravitationally. Precession also causes change in alignment between the rotational axis of the disc and the spin axis of the primary star. This type of alignment is of great important for explaining the origin of spin-orbit misaligned planetary systems. However, we find that the rigid-disc approximation fails to describe changes in alignment between the disc and the binary orbit. This is because the alignment process is a consequence of interactions that involve the fluidity of the disc, such as the tidal interaction and the encounter interaction. Furthermore, simulation results show that there are not only alignment processes, which bring the components towards alignment, but also anti-alignment processes, which tend to misalign the components. The alignment process dominates in systems with misalignment angle near 90°, while the anti-alignment process dominates in systems with the misalignment angle near 0° or 180°. This means that highly misaligned systems will become more aligned but slightly misaligned systems will become more misaligned.

  7. The Meritfactor of Binary Seqences

    DEFF Research Database (Denmark)

    Høholdt, Tom

    1999-01-01

    Binary sequences with small aperiodic correlations play an important role in many applications ranging from radar to modulation and testing of systems. Golay(1977) introduced the merit factor as a measure of the goodness of the sequence and conjectured an upper bound for this. His conjecture is s...

  8. CHAOTIC ZONES AROUND GRAVITATING BINARIES

    Energy Technology Data Exchange (ETDEWEB)

    Shevchenko, Ivan I., E-mail: iis@gao.spb.ru [Pulkovo Observatory of the Russian Academy of Sciences, Pulkovskoje ave. 65, St. Petersburg 196140 (Russian Federation)

    2015-01-20

    The extent of the continuous zone of chaotic orbits of a small-mass tertiary around a system of two gravitationally bound primaries of comparable masses (a binary star, a binary black hole, a binary asteroid, etc.) is estimated analytically, as a function of the tertiary's orbital eccentricity. The separatrix map theory is used to demonstrate that the central continuous chaos zone emerges (above a threshold in the primaries' mass ratio) due to overlapping of the orbital resonances corresponding to the integer ratios p:1 between the tertiary and the central binary periods. In this zone, the unlimited chaotic orbital diffusion of the tertiary takes place, up to its ejection from the system. The primaries' mass ratio, above which such a chaotic zone is universally present at all initial eccentricities of the tertiary, is estimated. The diversity of the observed orbital configurations of biplanetary and circumbinary exosystems is shown to be in accord with the existence of the primaries' mass parameter threshold.

  9. A Galactic Binary Detection Pipeline

    Science.gov (United States)

    Littenberg, Tyson B.

    2011-01-01

    The Galaxy is suspected to contain hundreds of millions of binary white dwarf systems, a large fraction of which will have sufficiently small orbital period to emit gravitational radiation in band for space-based gravitational wave detectors such as the Laser Interferometer Space Antenna (LISA). LISA's main science goal is the detection of cosmological events (supermassive black hole mergers, etc.) however the gravitational signal from the galaxy will be the dominant contribution to the data - including instrumental noise over approximately two decades in frequency. The catalogue of detectable binary systems will serve as an unparalleled means of studying the Galaxy. Furthermore, to maximize the scientific return from the mission, the data must be "cleansed" of the galactic foreground. We will present an algorithm that can accurately resolve and subtract 2:: 10000 of these sources from simulated data supplied by the Mock LISA Data Challenge Task Force. Using the time evolution of the gravitational wave frequency, we will reconstruct the position of the recovered binaries and show how LISA will sample the entire compact binary population in the Galaxy.

  10. A Redundant Binary Algorithm for RSA

    Institute of Scientific and Technical Information of China (English)

    施荣华

    1996-01-01

    The normal form and modified normal form for binary redundant representation are defined.A redundant binary algorithm to compute modular exponentiation for very large integers is proposed.It is shown that the proposed algorithm requires the minimum number of basic operations(modular multiplications)among all possible binary redundant representations.

  11. Division Unit for Binary Integer Decimals

    DEFF Research Database (Denmark)

    Lang, Tomas; Nannarelli, Alberto

    2009-01-01

    In this work, we present a radix-10 division unit that is based on the digit-recurrence algorithm and implements binary encodings (binary integer decimal or BID) for significands. Recent decimal division designs are all based on the binary coded decimal (BCD) encoding. We adapt the radix-10 digit...

  12. Permutation Entropy for Random Binary Sequences

    Directory of Open Access Journals (Sweden)

    Lingfeng Liu

    2015-12-01

    Full Text Available In this paper, we generalize the permutation entropy (PE measure to binary sequences, which is based on Shannon’s entropy, and theoretically analyze this measure for random binary sequences. We deduce the theoretical value of PE for random binary sequences, which can be used to measure the randomness of binary sequences. We also reveal the relationship between this PE measure with other randomness measures, such as Shannon’s entropy and Lempel–Ziv complexity. The results show that PE is consistent with these two measures. Furthermore, we use PE as one of the randomness measures to evaluate the randomness of chaotic binary sequences.

  13. Desktop setup for binary holograms

    Science.gov (United States)

    Ginter, Olaf; Rothe, Hendrik

    1996-08-01

    Binary gratings as holograms itself or as photographic masking tools for further fabrication steps can fulfill a lot of applications. The commonly used semiconductor technologies for direct writing of high resolution structures are often too expensive. On the other hand computer plots at a reasonable price with photographic reduction do not meet the needs of precision e.g. for interferometric inspection. The lack of cheap and reliable instruments for direct writing in an appropriate resolution is still a problem in fabricating synthetic holograms. Using off-the-shelf components a direct writing plotter for binary patterns can be built at moderate costs. Typical design rules as well as experimental results are given and the final setup is introduced.

  14. Close supermassive binary black holes

    Science.gov (United States)

    Gaskell, C. Martin

    2010-01-01

    It has been proposed that when the peaks of the broad emission lines in active galactic nuclei (AGNs) are significantly blueshifted or redshifted from the systemic velocity of the host galaxy, this could be a consequence of orbital motion of a supermassive blackhole binary (SMB). The AGN J1536+0441 (=SDSS J153636.22+044127.0) has recently been proposed as an example of this phenomenon. It is proposed here instead that 1536+044 is an example of line emission from a disc. If this is correct, the lack of clear optical spectral evidence for close SMBs is significant and argues either that the merging of close SMBs is much faster than has generally been hitherto thought, or if the approach is slow, that when the separation of the binary is comparable to the size of the torus and broad-line region, the feeding of the black holes is disrupted.

  15. Event Rates for Binary Inspiral

    CERN Document Server

    Kalogera, V

    2001-01-01

    Double compact objects (neutron stars and black holes) found in binaries with small orbital separations are known to spiral in and are expected to coalesce eventually because of the emission of gravitational waves. Such inspiral and merger events are thought to be primary sources for ground based gravitational-wave interferometric detectors (such as LIGO). Here, we present a brief review of estimates of coalescence rates and we examine the origin and relative importance of uncertainties associated with the rate estimates. For the case of double neutron star systems, we compare the most recent rate estimates to upper limits derived in a number of different ways. We also discuss the implications of the formation of close binaries with two non-recycled pulsars.

  16. Remnants of compact binary mergers

    CERN Document Server

    Domainko, W

    2006-01-01

    We investigate the long-term evolution and observability of remnants originating from the merger of compact binary systems and discuss the differences to supernova remnants. Compact binary mergers expel much smaller amounts of mass at much higher velocities, as compared to supernovae, which will affect the dynamical evolution of their remnants. The ejecta of mergers consist of very neutron rich nuclei. Some of these neutron rich nuclei will produce observational signatures in form of gamma ray lines during their decay. The composition of the ejecta might even give interesting constraints about the internal structure of the neutron star. We further discuss the possibility that merger remnants appear as recently discovered 'dark accelerators' which are extended TeV sources which lack emission in other bands.

  17. Modified binary particle swam optimization

    Institute of Scientific and Technical Information of China (English)

    Sangwook Lee; Sangmoon Soak; Sanghoun Oh; Witold Pedrycz; Moongu Jeon

    2008-01-01

    This paper presents a modified binary particle swarm optimization(BPSO)which adopts concepts of the genotype-phenotype rep-resentation and the mutation operator of genetic algorithms.Its main feature is that the BPSO can be treated as a continuous PSO.The proposed BPSO algorithm is tested on various benchmark functions,and its performance is compared with that of the original BPSO.Experimental results show that the modified BPSO outperforms the original BPSO algorithm.

  18. Tides in asynchronous binary systems

    OpenAIRE

    Toledano, Oswaldo; Moreno, Edmundo; Koenigsberger, Gloria; Detmers, R.; Langer, Norbert

    2006-01-01

    Stellar oscillations are excited in non-synchronously rotating stars in binary systems due to the tidal forces. Tangential components of the tides can drive a shear flow which behaves as a differentially forced rotating structure in a stratified outer medium. In this paper we show that our single-layer approximation for the calculation of the forced oscillations yields results that are consistent with the predictions for the synchronization timescales in circular orbits. In addition, calibrat...

  19. Evolution of binary stars in multiple-population globular clusters - II. Compact binaries

    Science.gov (United States)

    Hong, Jongsuk; Vesperini, Enrico; Sollima, Antonio; McMillan, Stephen L. W.; D'Antona, Franca; D'Ercole, Annibale

    2016-04-01

    We present the results of a survey of N-body simulations aimed at exploring the evolution of compact binaries in multiple-population globular clusters. We show that as a consequence of the initial differences in the structural properties of the first-generation (FG) and the second-generation (SG) populations and the effects of dynamical processes on binary stars, the SG binary fraction decreases more rapidly than that of the FG population. The difference between the FG and SG binary fraction is qualitatively similar to but quantitatively smaller than that found for wider binaries in our previous investigations. The evolution of the radial variation of the binary fraction is driven by the interplay between binary segregation, ionization and ejection. Ionization and ejection counteract in part the effects of mass segregation but for compact binaries the effects of segregation dominate and the inner binary fraction increases during the cluster evolution. We explore the variation of the difference between the FG and the SG binary fraction with the distance from the cluster centre and its dependence on the binary binding energy and cluster structural parameters. The difference between the binary fraction in the FG and the SG populations found in our simulations is consistent with the results of observational studies finding a smaller binary fraction in the SG population.

  20. Detection of unresolved binaries with multicolor photometry

    CERN Document Server

    Chulkov, D; Malkov, O; Sichevskij, S; Krussanova, N; Mironov, A; Zakharov, A; Kniazev, A

    2016-01-01

    The principal goal of this paper is to specify conditions of detection of unresolved binaries by multicolor photometry. We have developed a method for estimating the critical distance at which an unresolved binary of given mass and age can be detected. The method is applied to the photometric system of the planned Lyra-B spaceborne experiment. We have shown that some types of unresolved binary stars can be discovered and distinguished from single stars solely by means of photometric observations.

  1. Asteroid Systems: Binaries, Triples, and Pairs

    CERN Document Server

    Margot, Jean-Luc; Taylor, Patrick; Carry, Benoît; Jacobson, Seth

    2015-01-01

    In the past decade, the number of known binary near-Earth asteroids has more than quadrupled and the number of known large main belt asteroids with satellites has doubled. Half a dozen triple asteroids have been discovered, and the previously unrecognized populations of asteroid pairs and small main belt binaries have been identified. The current observational evidence confirms that small (20 km) binaries with small satellites are most likely created during large collisions.

  2. Orbital eccentricities in primordial black holes binaries

    OpenAIRE

    Cholis, Ilias; Kovetz, Ely D.; Ali-Haïmoud, Yacine; Bird, Simeon; Kamionkowski, Marc; Muñoz, Julian B.; Raccanelli, Alvise

    2016-01-01

    It was recently suggested that the merger of $\\sim30\\,M_\\odot$ primordial black holes (PBHs) may provide a significant number of events in gravitational-wave observatories over the next decade, if they make up an appreciable fraction of the dark matter. Here we show that measurement of the eccentricities of the inspiralling binary black holes can be used to distinguish these binaries from those produced by more traditional astrophysical mechanisms. These PBH binaries are formed on highly ecce...

  3. Microlensing Signature of Binary Black Holes

    Science.gov (United States)

    Schnittman, Jeremy; Sahu, Kailash; Littenberg, Tyson

    2012-01-01

    We calculate the light curves of galactic bulge stars magnified via microlensing by stellar-mass binary black holes along the line-of-sight. We show the sensitivity to measuring various lens parameters for a range of survey cadences and photometric precision. Using public data from the OGLE collaboration, we identify two candidates for massive binary systems, and discuss implications for theories of star formation and binary evolution.

  4. Detecting Near-Extremal Binary Black Holes

    Science.gov (United States)

    Hemberger, Daniel

    2014-03-01

    There is an ongoing effort in the gravitational wave astronomy community to construct a template bank for Advanced LIGO that includes gravitational waveforms from binary black hole systems with high mass ratios and spins. Using numerical relativity simulations performed with the Spectral Einstein Code, we assess the prospects for detection and parameter estimation of binaries with spins above the expected template bank cutoff spin. This analysis is restricted to equal-mass, non-precessing binaries.

  5. Eliciting Subjective Probabilities with Binary Lotteries

    DEFF Research Database (Denmark)

    Harrison, Glenn W.; Martínez-Correa, Jimmy; Swarthout, J. Todd

    We evaluate the binary lottery procedure for inducing risk neutral behavior in a subjective belief elicitation task. Harrison, Martínez-Correa and Swarthout [2013] found that the binary lottery procedure works robustly to induce risk neutrality when subjects are given one risk task defined over...... objective probabilities. Drawing a sample from the same subject population, we find evidence that the binary lottery procedure induces linear utility in a subjective probability elicitation task using the Quadratic Scoring Rule. We also show that the binary lottery procedure can induce direct revelation...

  6. Speech perception of noise with binary gains

    DEFF Research Database (Denmark)

    Wang, DeLiang; Kjems, Ulrik; Pedersen, Michael Syskind;

    2008-01-01

    For a given mixture of speech and noise, an ideal binary time-frequency mask is constructed by comparing speech energy and noise energy within local time-frequency units. It is observed that listeners achieve nearly perfect speech recognition from gated noise with binary gains prescribed by the i...... by the ideal binary mask. Only 16 filter channels and a frame rate of 100 Hz are sufficient for high intelligibility. The results show that, despite a dramatic reduction of speech information, a pattern of binary gains provides an adequate basis for speech perception....

  7. Massive Stars in Interactive Binaries

    Science.gov (United States)

    St.-Louis, Nicole; Moffat, Anthony F. J.

    Massive stars start their lives above a mass of ~8 time solar, finally exploding after a few million years as core-collapse or pair-production supernovae. Above ~15 solar masses, they also spend most of their lives driving especially strong, hot winds due to their extreme luminosities. All of these aspects dominate the ecology of the Universe, from element enrichment to stirring up and ionizing the interstellar medium. But when they occur in close pairs or groups separated by less than a parsec, the interaction of massive stars can lead to various exotic phenomena which would not be seen if there were no binaries. These depend on the actual separation, and going from wie to close including colliding winds (with non-thermal radio emission and Wolf-Rayet dust spirals), cluster dynamics, X-ray binaries, Roche-lobe overflow (with inverse mass-ratios and rapid spin up), collisions, merging, rejuventation and massive blue stragglers, black-hole formation, runaways and gamma-ray bursts. Also, one wonders whether the fact that a massive star is in a binary affects its parameters compared to its isolated equivalent. These proceedings deal with all of these phenomena, plus binary statistics and determination of general physical properties of massive stars, that would not be possible with their single cousins. The 77 articles published in these proceedings, all based on oral talks, vary from broad revies to the lates developments in the field. About a third of the time was spent in open discussion of all participants, both for ~5 minutes after each talk and 8 half-hour long general dialogues, all audio-recorded, transcribed and only moderately edited to yield a real flavour of the meeting. The candid information in these discussions is sometimes more revealing than the article(s) that preceded them and also provide entertaining reading. The book is suitable for researchers and graduate students interested in stellar astrophysics and in various physical processes involved when

  8. The structures of binary compounds

    CERN Document Server

    Hafner, J; Jensen, WB; Majewski, JA; Mathis, K; Villars, P; Vogl, P; de Boer, FR

    1990-01-01

    - Up-to-date compilation of the experimental data on the structures of binary compounds by Villars and colleagues. - Coloured structure maps which order the compounds into their respective structural domains and present for the first time the local co-ordination polyhedra for the 150 most frequently occurring structure types, pedagogically very helpful and useful in the search for new materials with a required crystal structure. - Crystal co-ordination formulas: a flexible notation for the interpretation of solid-state structures by chemist Bill Jensen. - Recent important advances in unders

  9. Young and Waltzing Binary Stars

    Science.gov (United States)

    2001-10-01

    ADONIS Observes Low-mass Eclipsing System in Orion Summary A series of very detailed images of a binary system of two young stars have been combined into a movie . In merely 3 days, the stars swing around each other. As seen from the earth, they pass in front of each other twice during a full revolution, producing eclipses during which their combined brightness diminishes . A careful analysis of the orbital motions has now made it possible to deduce the masses of the two dancing stars . Both turn out to be about as heavy as our Sun. But while the Sun is about 4500 million years old, these two stars are still in their infancy. They are located some 1500 light-years away in the Orion star-forming region and they probably formed just 10 million years ago . This is the first time such an accurate determination of the stellar masses could be achieved for a young binary system of low-mass stars . The new result provides an important piece of information for our current understanding of how young stars evolve. The observations were obtained by a team of astronomers from Italy and ESO [1] using the ADaptive Optics Near Infrared System (ADONIS) on the 3.6-m telescope at the ESO La Silla Observatory. PR Photo 29a/01 : The RXJ 0529.4+0041 system before primary eclipse PR Photo 29b/01 : The RXJ 0529.4+0041 system at mid-primary eclipse PR Photo 29c/01 : The RXJ 0529.4+0041 system after primary eclipse PR Photo 29d/01 : The RXJ 0529.4+0041 system before secondary eclipse PR Photo 29e/01 : The RXJ 0529.4+0041 system at mid-secondary eclipse PR Photo 29f/01 : The RXJ 0529.4+0041 system after secondary eclipse PR Video Clip 06/01 : Video of the RXJ 0529.4+0041 system Binary stars and stellar masses Since some time, astronomers have noted that most stars seem to form in binary or multiple systems. This is quite fortunate, as the study of binary stars is the only way in which it is possible to measure directly one of the most fundamental quantities of a star, its mass. The mass of a

  10. R144 : a very massive binary likely ejected from R136 through a binary-binary encounter

    CERN Document Server

    Oh, Seungkyung; Banerjee, Sambaran

    2013-01-01

    R144 is a recently confirmed very massive, spectroscopic binary which appears isolated from the core of the massive young star cluster R136. The dynamical ejection hypothesis as an origin for its location is claimed improbable by Sana et al. due to its binary nature and high mass. We demonstrate here by means of direct N-body calculations that a very massive binary system can be readily dynamically ejected from a R136-like cluster, through a close encounter with a very massive system. One out of four N-body cluster models produces a dynamically ejected very massive binary system with a mass comparable to R144. The system has a system mass of $\\approx$ 355 Msun and is located at 36.8 pc from the centre of its parent cluster, moving away from the cluster with a velocity of 57 km/s at 2 Myr as a result of a binary-binary interaction. This implies that R144 could have been ejected from R136 through a strong encounter with an other massive binary or single star. In addition, we discuss all massive binaries and sin...

  11. Millisecond Pulsars in Close Binaries

    CERN Document Server

    Tauris, Thomas M

    2015-01-01

    In this Habilitationsschrift (Habilitation thesis) I present my research carried out over the last four years at the Argelander Institute for Astronomy (AIfA) and the Max Planck Institute for Radio Astronomy (MPIfR). The thesis summarizes my main findings and has been written to fulfill the requirements for the Habilitation qualification at the University of Bonn. Although my work is mainly focused on the topic of millisecond pulsars (MSPs), there is a fairly broad spread of research areas ranging from the formation of neutron stars (NSs) in various supernova (SN) events, to their evolution, for example, via accretion processes in binary and triple systems, and finally to their possible destruction in merger events. The thesis is organized in the following manner: A general introduction to neutron stars and millisecond pulsars is given in Chapter 1. A selection of key papers published in 2011-2014 are presented in Chapters 2-10, ordered within five main research areas (ultra-stripped SNe in close binaries, ma...

  12. Close Binary System GO Cyg

    CERN Document Server

    Ulas, B; Keskin, V; Kose, O; Yakut, K

    2011-01-01

    In this study, we present long term photometric variations of the close binary system \\astrobj{GO Cyg}. Modelling of the system shows that the primary is filling Roche lobe and the secondary of the system is almost filling its Roche lobe. The physical parameters of the system are $M_1 = 3.0\\pm0.2 M_{\\odot}$, $M_2 = 1.3 \\pm 0.1 M_{\\odot}$, $R_1 = 2.50\\pm 0.12 R_{\\odot}$, $R_2 = 1.75 \\pm 0.09 R_{\\odot}$, $L_1 = 64\\pm 9 L_{\\odot}$, $L_2 = 4.9 \\pm 0.7 L_{\\odot}$, and $a = 5.5 \\pm 0.3 R_{\\odot}$. Our results show that \\astrobj{GO Cyg} is the most massive system near contact binary (NCB). Analysis of times of the minima shows a sinusoidal variation with a period of $92.3\\pm0.5$ years due to a third body whose mass is less than 2.3$M_{\\odot}$. Finally a period variation rate of $-1.4\\times10^{-9}$ d/yr has been determined using all available light curves.

  13. Interacting Jets from Binary Protostars

    CERN Document Server

    Murphy, G C; O'Sullivan, S; Spicer, D; Bacciotti, F; Rosén, A

    2007-01-01

    We investigate potential models that could explain why multiple proto-stellar systems predominantly show single jets. During their formation, stars most frequently produce energetic outflows and jets. However, binary jets have only been observed in a very small number of systems. We model numerically 3D binary jets for various outflow parameters. We also model the propagation of jets from a specific source, namely L1551 IRS 5, known to have two jets, using recent observations as constraints for simulations with a new MHD code. We examine their morphology and dynamics, and produce synthetic emission maps. We find that the two jets interfere up to the stage where one of them is almost destroyed or engulfed into the second one. We are able to reproduce some of the observational features of L1551 such as the bending of the secondary jet. While the effects of orbital motion are negligible over the jets dynamical timeline, their interaction has significant impact on their morphology. If the jets are not strictly pa...

  14. Mercury and Selenium in Muscle and Target Organs of Scalloped Hammerhead Sharks Sphyrna lewini of the SE Gulf of California: Dietary Intake, Molar Ratios, Loads, and Human Health Risks.

    Science.gov (United States)

    Bergés-Tiznado, Magdalena E; Márquez-Farías, Fernando; Lara-Mendoza, Raúl E; Torres-Rojas, Yassir E; Galván-Magaña, Felipe; Bojórquez-Leyva, Humberto; Páez-Osuna, Federico

    2015-11-01

    Selenium and mercury were evaluated in muscle, liver, kidney, brain, and the stomach contents of juvenile scalloped hammerhead shark Sphyrna lewini. Se:Hg molar ratios were calculated. The average Hg levels in muscle ranged from 0.12 to 1.17 μg/g (wet weight); Hg was 1. Correlations were found for Hg in muscle with size, age, and weight, and also for Hg in liver with size, age, and weight. Hg in muscle was significantly positive correlated to Hg in brain as well as Hg in liver was correlated to Hg in kidney. The highest Hg in preys was for carangid fishes; scombrid and carangid fishes contributed with the highest Se levels. Results suggest that more than 98 % of the total Hg and 62 % of Se end up in muscle and might be affected by factors, such as geographical area, age, size, and feeding habits. The muscle of S. lewini should be consumed by people cautiously so as not to exceed the recommended intake per week. PMID:26369650

  15. The Evolution of Compact Binary Star Systems

    Directory of Open Access Journals (Sweden)

    Yungelson, Lev R.

    2006-12-01

    Full Text Available We review the formation and evolution of compact binary stars consisting of white dwarfs (WDs, neutron stars (NSs, and black holes (BHs. Binary NSs and BHs are thought to be the primary astrophysical sources of gravitational waves (GWs within the frequency band of ground-based detectors, while compact binaries of WDs are important sources of GWs at lower frequencies to be covered by space interferometers (LISA. Major uncertainties in the current understanding of properties of NSs and BHs most relevant to the GW studies are discussed, including the treatment of the natal kicks which compact stellar remnants acquire during the core collapse of massive stars and the common envelope phase of binary evolution. We discuss the coalescence rates of binary NSs and BHs and prospects for their detections, the formation and evolution of binary WDs and their observational manifestations. Special attention is given to AM CVn-stars -- compact binaries in which the Roche lobe is filled by another WD or a low-mass partially degenerate helium-star, as these stars are thought to be the best LISA verification binary GW sources.

  16. The Evolution of Compact Binary Star Systems

    Directory of Open Access Journals (Sweden)

    Konstantin A. Postnov

    2014-05-01

    Full Text Available We review the formation and evolution of compact binary stars consisting of white dwarfs (WDs, neutron stars (NSs, and black holes (BHs. Mergings of compact-star binaries are expected to be the most important sources for forthcoming gravitational-wave (GW astronomy. In the first part of the review, we discuss observational manifestations of close binaries with NS and/or BH components and their merger rate, crucial points in the formation and evolution of compact stars in binary systems, including the treatment of the natal kicks, which NSs and BHs acquire during the core collapse of massive stars and the common envelope phase of binary evolution, which are most relevant to the merging rates of NS-NS, NS-BH and BH-BH binaries. The second part of the review is devoted mainly to the formation and evolution of binary WDs and their observational manifestations, including their role as progenitors of cosmologically-important thermonuclear SN Ia. We also consider AM CVn-stars, which are thought to be the best verification binary GW sources for future low-frequency GW space interferometers.

  17. Helium in atmospheres of binary stars

    Energy Technology Data Exchange (ETDEWEB)

    Leushin, V.V. (Rostovskij-na-Donu Gosudarstvennyj Univ. (USSR). Nauchno-Issledovatel' skij Inst. Fiziki)

    The helium abundances were obtained for 25 bright components of binary stars by model atmosphere analysis. The helium abundance for binary stars that lie on the main sequence are larger in the average than in single normal stars. The stars on the Hertzsppung - russel diagram lie at a larger distance from the zero age line than those with normal helium abundance.

  18. Bayesian analysis of exoplanet and binary orbits

    OpenAIRE

    Schulze-Hartung, Tim; Launhardt, Ralf; Henning, Thomas

    2012-01-01

    We introduce BASE (Bayesian astrometric and spectroscopic exoplanet detection and characterisation tool), a novel program for the combined or separate Bayesian analysis of astrometric and radial-velocity measurements of potential exoplanet hosts and binary stars. The capabilities of BASE are demonstrated using all publicly available data of the binary Mizar A.

  19. Binary Relations as a Foundation of Mathematics

    NARCIS (Netherlands)

    Kuper, J.; Barendsen, E.; Capretta, V.; Geuvers, H.; Niqui, M.

    2007-01-01

    We describe a theory for binary relations in the Zermelo-Fraenkel style. We choose for ZFCU, a variant of ZFC Set theory in which the Axiom of Foundation is replaced by an axiom allowing for non-wellfounded sets. The theory of binary relations is shown to be equi-consistent ZFCU by constructing a mo

  20. Coalescing binaries as possible standard candles

    OpenAIRE

    Capozziello, S.; De Laurentis, M.; Formisano, M.

    2009-01-01

    Gravitational waves detected from well-localized inspiraling binaries would allow to determine, directly and independently, both binary luminosity and redshift. In this case, such systems could behave as "standard candles" providing an excellent probe of cosmic distances up to $z

  1. Microlensing Binaries with Candidate Brown Dwarf Companions

    DEFF Research Database (Denmark)

    Shin, I.-G; Han, C.; Gould, A.;

    2012-01-01

    Brown dwarfs are important objects because they may provide a missing link between stars and planets, two populations that have dramatically different formation histories. In this paper, we present the candidate binaries with brown dwarf companions that are found by analyzing binary microlensing ...

  2. Cosmological distance indicators by coalescing binaries

    CERN Document Server

    De Laurentis, Mariafelicia; De Martino, Ivan; Formisano, Michelangelo

    2011-01-01

    Gravitational waves detected from well-localized inspiraling binaries would allow to determine, directly and independently, both binary luminosity and redshift. In this case, such systems could behave as "standard candles" providing an excellent probe of cosmic distances up to z < 0.1 and thus complementing other indicators of cosmological distance ladder.

  3. Evolution of non-synchronized binary systems

    Institute of Scientific and Technical Information of China (English)

    黄润乾; 曾艺蓉

    2000-01-01

    A model for binary evolution is introduced which can determine whether the rotation of components is synchronized with the orbital motion, and can calculate the evolution of both the synchronized and non-synchronized binary systems. With this model, the evolution of a binary system consisting of a 9 M star and a 6 M star is studied with mass transfer Case B. The result shows that the synchronization of the rotational and orbital periods can be reached when the binary system is a detached system and before the occurrence of the first mass transfer. After the onset of the first mass transfer, the binary system becomes non-synchronized. The mass accepted component (the secondary) rotates faster with a period much smaller than that of the orbital motion.

  4. Evolution of non-synchronized binary systems

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    A model for binary evolution is introduced which can determine whether the rotation of components is synchronized with the orbital motion, and can calculate the evolution of both the synchronized and non-synchronized binary systems. With this model, the evolution of a binary system consisting of a 9 M⊙ star and a 6 M⊙ star is studied with mass transfer Case B. The result shows that the synchronization of the rotational and orbital periods can be reached when the binary system is a detached system and before the occurrence of the first mass transfer. After the onset of the first mass transfer, the binary system becomes non-synchronized. The mass accepted component (the secondary) rotates faster with a period much smaller than that of the orbital motion.

  5. Planet Scattering Around Binaries: Ejections, Not Collisions

    CERN Document Server

    Smullen, Rachel A; Shannon, Andrew

    2016-01-01

    Transiting circumbinary planets discovered by Kepler provide unique insight into binary and planet formation. Several features of this new found population, for example the apparent pile-up of planets near the innermost stable orbit, may distinguish between formation theories. In this work, we determine how planet-planet scattering shapes planetary systems around binaries as compared to single stars. In particular, we look for signatures that arise due to differences in dynamical evolution in binary systems. We carry out a parameter study of N-body scattering simulations for four distinct planet populations around both binary and single stars. While binarity has little influence on the final system multiplicity or orbital distribution, the presence of a binary dramatically effects the means by which planets are lost from the system. Most circumbinary planets are lost due to ejections rather than planet-planet or planet-star collisions. The most massive planet in the system tends to control the evolution. Asid...

  6. Binary Cepheids from optical interferometry

    CERN Document Server

    Gallenne, A; Mérand, A; Monnier, J D; Pietrzyński, J Breitfelder G; Gieren, W

    2013-01-01

    Classical Cepheid stars have been considered since more than a century as reliable tools to estimate distances in the universe thanks to their Period-Luminosity (P-L) relationship. Moreover, they are also powerful astrophysical laboratories, providing fundamental clues for studying the pulsation and evolution of intermediate-mass stars. When in binary systems, we can investigate the age and evolution of the Cepheid, estimate the mass and distance, and constrain theoretical models. However, most of the companions are located too close to the Cepheid (1-40 mas) to be spatially resolved with a 10-meter class telescope. The only way to spatially resolve such systems is to use long-baseline interferometry. Recently, we have started a unique and long-term interferometric program that aims at detecting and characterizing physical parameters of the Cepheid companions, with as main objectives the determination of accurate masses and geometric distances.

  7. Record-Breaking Eclipsing Binary

    Science.gov (United States)

    Kohler, Susanna

    2016-05-01

    A new record holder exists for the longest-period eclipsing binary star system: TYC-2505-672-1. This intriguing system contains a primary star that is eclipsed by its companion once every 69 years with each eclipse lasting several years!120 Years of ObservationsIn a recent study, a team of scientists led by Joseph Rodriguez (Vanderbilt University) characterizes the components of TYC-2505-672-1. This binary star system consists of an M-type red giant star that undergoes a ~3.45-year-long, near-total eclipse with a period of ~69.1 years. This period is more than double that of the previous longest-period eclipsing binary!Rodriguez and collaborators combined photometric observations of TYC-2505-672-1 by the Kilodegree Extremely Little Telescope (KELT) with a variety of archival data, including observations by the American Association of Variable Star Observers (AAVSO) network and historical data from the Digital Access to a Sky Century @ Harvard (DASCH) program.In the 120 years spanned by these observations, two eclipses are detected: one in 1942-1945 and one in 2011-2015. The authors use the observations to analyze the components of the system and attempt to better understand what causes its unusual light curve.Characterizing an Unusual SystemObservations of TYC-2505-672-1 plotted from 1890 to 2015 reveal two eclipses. (The blue KELT observations during the eclipse show upper limits only.) [Rodriguez et al. 2016]By modeling the systems emission, Rodriguez and collaborators establish that TYC-2505-672-1 consists of a 3600-K primary star thats the M giant orbited by a small, hot, dim companion thats a toasty 8000 K. But if the companion is small, why does the eclipse last several years?The authors argue that the best model of TYC-2505-672-1 is one in which the small companion star is surrounded by a large, opaque circumstellar disk. Rodriguez and collaborators suggest that the companion could be a former red giant whose atmosphere was stripped from it, leaving behind

  8. Binary mixtures of chiral gases

    CERN Document Server

    Presilla, Carlo

    2015-01-01

    A possible solution of the well known paradox of chiral molecules is based on the idea of spontaneous symmetry breaking. At low pressure the molecules are delocalized between the two minima of a given molecular potential while at higher pressure they become localized in one minimum due to the intermolecular dipole-dipole interactions. Evidence for such a phase transition is provided by measurements of the inversion spectrum of ammonia and deuterated ammonia at different pressures. In particular, at pressure greater than a critical value no inversion line is observed. These data are well accounted for by a model previously developed and recently extended to mixtures. In the present paper, we discuss the variation of the critical pressure in binary mixtures as a function of the fractions of the constituents.

  9. Interrupted Binary Mass Transfer in Star Clusters

    CERN Document Server

    Leigh, Nathan W C; Toonen, Silvia

    2016-01-01

    Binary mass transfer is at the forefront of some of the most exciting puzzles of modern astrophysics, including Type Ia supernovae, gamma-ray bursts, and the formation of most observed exotic stellar populations. Typically, the evolution is assumed to proceed in isolation, even in dense stellar environments such as star clusters. In this paper, we test the validity of this assumption via the analysis of a large grid of binary evolution models simulated with the SeBa code. For every binary, we calculate analytically the mean time until another single or binary star comes within the mean separation of the mass-transferring binary, and compare this time-scale to the mean time for stable mass transfer to occur. We then derive the probability for each respective binary to experience a direct dynamical interruption. The resulting probability distribution can be integrated to give an estimate for the fraction of binaries undergoing mass transfer that are expected to be disrupted as a function of the host cluster pro...

  10. Fast algorithms for generating binary holograms

    CERN Document Server

    Stuart, Dustin; Kuhn, Axel

    2014-01-01

    We describe three algorithms for generating binary-valued holograms. Our methods are optimised for producing large arrays of tightly focussed optical tweezers for trapping particles. Binary-valued holograms allow us to use a digital mirror device (DMD) as the display element, which is much faster than other alternatives. We describe how our binary amplitude holograms can be used to correct for phase errors caused by optical aberrations. Furthermore, we compare the speed and accuracy of the algorithms for both periodic and arbitrary arrangements of traps, which allows one to choose the ideal scheme depending on the circumstances.

  11. Pd-Si binary bulk metallic glass

    Institute of Scientific and Technical Information of China (English)

    YAO KeFu; CHEN Na

    2008-01-01

    Pd80+xSi20-x (x=0, 1, and 2) binary metallic glasses with the diameter ranging from 7 to 8 mm were prepared by a combination of fluxing and water quenching or air cooling. Thermal analysis results show that with increasing Si content, the glass transition temperature Tg, the initial crystallization temperature Tx and the onset crystalliza-tion temperature Tp of Pd-Si binary glassy alloys increase. Moreover, the super-cooled liquid region reaches 61 K. It indicates that Pd-Si binary alloys possess large glass forming ability, which can be greatly improved by fluxing treatment.

  12. Pd-Si binary bulk metallic glass

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    Pd80+xSi20-x (x=0,1,and 2) binary metallic glasses with the diameter ranging from 7 to 8 mm were prepared by a combination of fluxing and water quenching or air cooling. Thermal analysis results show that with increasing Si content,the glass transition temperature Tg,the initial crystallization temperature Tx and the onset crystalliza-tion temperature Tp of Pd-Si binary glassy alloys increase. Moreover,the super-cooled liquid region reaches 61 K. It indicates that Pd-Si binary alloys possess large glass forming ability,which can be greatly improved by fluxing treatment.

  13. Eliciting Subjective Probabilities with Binary Lotteries

    DEFF Research Database (Denmark)

    Harrison, Glenn W.; Martínez-Correa, Jimmy; Swarthout, J. Todd

    2014-01-01

    We evaluate a binary lottery procedure for inducing risk neutral behavior in a subjective belief elicitation task. Prior research has shown this procedure to robustly induce risk neutrality when subjects are given a single risk task defined over objective probabilities. Drawing a sample from...... the same subject population, we find evidence that the binary lottery procedure also induces linear utility in a subjective probability elicitation task using the Quadratic Scoring Rule. We also show that the binary lottery procedure can induce direct revelation of subjective probabilities in subjects...

  14. Revised photometric elements of eight eclipsing binaries

    Science.gov (United States)

    Mezzetti, M.; Predolin, F.; Giuricin, G.; Mardirossian, F.

    1980-10-01

    Photoelectric lightcurves of eight eclipsing binaries, known as detached systems, have been reanalysed by means of Wood's model in order to obtain homogeneous photometric elements. All binaries are confirmed to be detached. TU Cam, CW CMa, YZ Cas, CW Eri, CO Lac and EE Peg appear to be normal main-sequence (or near main-sequence) detached systems, but only the absolute elements of CO Lac are well-known. The detached binaries EK Cep and IQ Per are shown to be anomalous.

  15. Cassini states for black hole binaries

    OpenAIRE

    Correia, Alexandre C. M.

    2015-01-01

    Cassini states correspond to the equilibria of the spin axis of a body when its orbit is perturbed. They were initially described for planetary satellites, but the spin axes of black hole binaries also present this kind of equilibria. In previous works, Cassini states were reported as spin-orbit resonances, but actually the spin of black hole binaries is in circulation and there is no resonant motion. Here we provide a general description of the spin dynamics of black hole binary systems base...

  16. Busting Up Binaries: Encounters Between Compact Binaries and a Supermassive Black Hole

    CERN Document Server

    Addison, Eric; Larson, Shane

    2015-01-01

    Given the stellar density near the galactic center, close encounters between compact object binaries and the supermassive black hole are a plausible occurrence. We present results from a numerical study of close to 13 million such encounters. Consistent with previous studies, we corroborate that, for binary systems tidally disrupted by the black hole, the component of the binary remaining bound to the hole has eccentricity ~ 0.97 and circularizes dramatically by the time it enters the classical LISA band. Our results also show that the population of surviving binaries merits attention. These binary systems experience perturbations to their internal orbital parameters with potentially interesting observational consequences. We investigated the regions of parameter space for survival and estimated the distribution of orbital parameters post-encounter. We found that surviving binaries harden and their eccentricity increases, thus accelerating their merger due gravitational radiation emission and increasing the p...

  17. CALCULATING THE HABITABLE ZONE OF BINARY STAR SYSTEMS. II. P-TYPE BINARIES

    Energy Technology Data Exchange (ETDEWEB)

    Haghighipour, Nader [Institute for Astronomy and NASA Astrobiology Institute, University of Hawaii-Manoa, Honolulu, HI 96822 (United States); Kaltenegger, Lisa [MPIA, Koenigstuhl 17, Heidelberg, D-69117 (Germany)

    2013-11-10

    We have developed a comprehensive methodology for calculating the circumbinary habitable zone (HZ) in planet-hosting P-type binary star systems. We present a general formalism for determining the contribution of each star of the binary to the total flux received at the top of the atmosphere of an Earth-like planet and use the Sun's HZ to calculate the inner and outer boundaries of the HZ around a binary star system. We apply our calculations to the Kepler's currently known circumbinary planetary systems and show the combined stellar flux that determines the boundaries of their HZs. We also show that the HZ in P-type systems is dynamic and, depending on the luminosity of the binary stars, their spectral types, and the binary eccentricity, its boundaries vary as the stars of the binary undergo their orbital motion. We present the details of our calculations and discuss the implications of the results.

  18. CALCULATING THE HABITABLE ZONE OF BINARY STAR SYSTEMS. II. P-TYPE BINARIES

    International Nuclear Information System (INIS)

    We have developed a comprehensive methodology for calculating the circumbinary habitable zone (HZ) in planet-hosting P-type binary star systems. We present a general formalism for determining the contribution of each star of the binary to the total flux received at the top of the atmosphere of an Earth-like planet and use the Sun's HZ to calculate the inner and outer boundaries of the HZ around a binary star system. We apply our calculations to the Kepler's currently known circumbinary planetary systems and show the combined stellar flux that determines the boundaries of their HZs. We also show that the HZ in P-type systems is dynamic and, depending on the luminosity of the binary stars, their spectral types, and the binary eccentricity, its boundaries vary as the stars of the binary undergo their orbital motion. We present the details of our calculations and discuss the implications of the results

  19. Binaries Like to be Twins: Implications for Doubly Degenerate Binaries, the Supernova Ia Rate and Other Interacting Binaries

    CERN Document Server

    Pinsonneault, M H

    2006-01-01

    The recent sample of 21 detached eclipsing binaries in the Small Magellanic Cloud (Harries et al. 2003, Hilditch et al. 2005) provides a valuable test of the binary mass function for massive stars. We show that 50% of detached binaries have companions with very similar masses, q=M_2/M_1 > 0.87, where M_1, M_2 denote the masses of the two binary components, M_1 > M_2. A Salpeter relative mass function for the secondary is very strongly excluded, and the data is consistent with a flat mass function containing 55% of the systems and a ``twin'' population with q>0.95 containing the remainder. We also survey the vast existing literature discussing the mass ratio in binaries and conclude that a significant twin population (of more than 20-25%) exists in binaries that are likely to interact across a broad range of stellar masses and metallicity. Interactions involving nearly equal mass stars have distinctly different properties than those involving stars of unequal mass; the secondaries will tend to be evolved and t...

  20. Properties of planets in binary systems. The role of binary separation

    OpenAIRE

    Desidera, S.; Barbieri, M.

    2006-01-01

    The statistical properties of planets in binaries were investigated. Any difference to planets orbiting single stars can shed light on the formation and evolution of planetary systems. As planets were found around components of binaries with very different separation and mass ratio, it is particularly important to study the characteristics of planets as a function of the effective gravitational influence of the companion. A compilation of planets in binary systems was made; a search for compa...

  1. Binaries in the Hipparcos data: Keep digging

    CERN Document Server

    Pourbaix, D; Jorissen, A

    2004-01-01

    Among the 120 000 objects in the Hipparcos catalogue, only 235 were fitted with an orbital model. Besides these 235 original astrometric binaries, most Hipparcos entries with a known spectroscopic orbit (extrasolar planet or stellar companion) have now been re-processed, as part of the on-going construction of the 9th Catalogue of Spectroscopic Binary Orbits (SB9, available at http://sb9.astro.ulb.ac.be). The pitfalls and successes of this re-processing are discussed in various contexts, like (i) orbital inclinations: the holy grail for extrasolar planets (ii) searching for binaries without a priori knowledge of their spectroscopic orbital elements, and application to barium stars (iii) why not all SB9 entries yield acceptable astrometric solutions? The lessons learned from this study are useful to devise the best possible binary-detection and orbit-determination algorithms for future astrometric missions like GAIA.

  2. A mesoscopic model for binary fluids

    CERN Document Server

    Echeverria, C; Alvarez-Llamoza, O; Orozco-Guillén, E E; Morales, M; Cosenza, M G

    2016-01-01

    We propose a model to study symmetric binary fluids, based in the mesoscopic molecular simulation technique known as multiparticle collision, where space and state variables are continuous while time is discrete. We include a repulsion rule to simulate segregation processes that does not require the calculation of the interaction forces between particles, thus allowing the description of binary fluids at a mesoscopic scale. The model is conceptually simple, computationally efficient, maintains Galilean invariance, and conserves the mass and the energy in the system at micro and macro scales; while momentum is conserved globally. For a wide range of temperatures and densities, the model yields results in good agreement with the known properties of binary fluids, such as density profile, width of the interface, phase separation and phase growth. We also apply the model to study binary fluids in crowded environments with consistent results.

  3. Searching for Pulsars in Close Binary Systems

    CERN Document Server

    Jouteux, S; Stappers, B W; Jonker, P; Van der Klis, M

    2001-01-01

    We present a detailed mathematical analysis of the Fourier response of binary pulsar signals whose frequencies are modulated by circular orbital motion. The fluctuation power spectrum of such signals is found to be \

  4. Recombinant adeno-associated virus serotype 9 with p65 ribozyme protects H9c2 cells from oxidative stress through inhibiting NF-κB signaling pathway

    Institute of Scientific and Technical Information of China (English)

    Zhan SUN; Yi-Tong MA; Bang-Dang CHEN; Fen LIU

    2014-01-01

    Background Oxidative stress is a major mechanism underlying the pathogenesis of cardiovascular disease. It can trigger inflammatory cascades which are primarily mediated via nuclear factor-κB (NF-κB). The NF-κB transcription factor family includes several subunits (p50, p52, p65, c-Rel, and Rel B) that respond to myocardial ischemia. It has been proved that persistent myocyte NF-κB p65 activation in heart failure exacerbates cardiac remodeling. Mechods A recombinant adeno-associated virus serotype 9 carrying enhanced green fluorescent protein and anti-NF-κB p65 ribozyme (AAV9-R65-CMV-eGFP) was constructed. The cells were assessed by MTT assay, Annexin V–propidium iodide dual staining to study apoptosis. The expression of P65 and P50 were assessed by Western blot to investigate the under-lying molecular mechanisms. Results After stimulation with H2O2 for 6 h, H9c2 cells viability decreased significantly, a large fraction of cells underwent apoptosis. We observed a rescue of H9c2 cells from H2O2-induced apoptosis in pretreatment with AAV9-R65-CMV-eGFP. Moreover, AAV9-R65-CMV-eGFP decreased H2O2-induced P65 expression. Conclusions AAV9-R65-CMV-eGFP protects H9c2 cells from oxidative stress induced apoptosis through down-regulation of P65 expression. These observations indicate that AAV9-R65-CMV-eGFP has the potential to exert cardioprotective effects against oxidative stress, which might be of great importance to clinical efficacy for cardiovascular disease.

  5. EFFECTS OF IN VIVO GENE TRANSDUCTION OF ANTI-MDR1 RIBOZYME IN COMBINATION WITH CHEMOTHERAPY ON MULTIDRUG-RESISTANT HUMAN LYMPHOMA GROWTH IN MICE

    Institute of Scientific and Technical Information of China (English)

    2003-01-01

    Objective: To study the effect of adenovirus- mediated transfer of anti-MDR1 ribozyme on the reversal of multidrug resistant (MDR) phenotype of P-glycoprotein (P-gp)-positive Daudi human Burkitt lymphoma both in vitro and in vivo. Methods: A recombinant adenovirus expressing 196Rz (Adv-196Rz) was developed and functionally evaluated. SCID mice inoculated subcutaneously (s.c.) with 5×106 Daudi/MDR20 cells were locally treated with Adv-196Rz or mock virus (Adv-Mock) at the multiplicity of infection (MOI) of 400 PFU once a day for 3 consecutive days. Then the mice were intraperitoneally (i.p.) administrated with vincristine (VCR) 450ng/g for 5 consecutive days. Results: In vitro employment of Adv-196Rz was able to interrupt MDR1 transcription, to inhibit P-gp expression and to restore drug sensitivity to VCR of Daudi/MDR20 cells. In vivo, 87.5% (7/8) of Daudi/MDR20-inoculated mice treated with Adv-Mock+ VCR developed palpable tumor by the 6th week and died or were sacrificed (because of tumor weight > 10% of body weight) by the 11th week. In contrast, among 9 Daudi/MDR20-inoculated mice treated with Adv-196Rz + VCR, only 3 developed tumor by the 11th, 13th and 14th week, respectively. 66.7% of mice survived >120 days in tumor-free. The survival difference between the two groups was very significant (P<0.01). Conclusion: Adenovirus- mediated Transfer of 196Rz can revert drug resistance of MDR tumor cells both in vitro and in vivo. Adv-196Rz may prove useful as an adjuvant in the chemotherapy of P-gp mediated MDR human tumors.

  6. Evolution of Binary Stars in Multiple-Population Globular Clusters - II. Compact Binaries

    CERN Document Server

    Hong, Jongsuk; Sollima, Antonio; McMillan, Stephen L W; D'Antona, Franca; D'Ercole, Annibale

    2016-01-01

    We present the results of a survey of N-body simulations aimed at exploring the evolution of compact binaries in multiple-population globular clusters.We show that as a consequence of the initial differences in the structural properties of the first-generation (FG) and the second-generation (SG) populations and the effects of dynamical processes on binary stars, the SG binary fraction decreases more rapidly than that of the FG population. The difference between the FG and SG binary fraction is qualitatively similar to but quantitatively smaller than that found for wider binaries in our previous investigations.The evolution of the radial variation of the binary fraction is driven by the interplay between binary segregation, ionization and ejection. Ionization and ejection counteract in part the effects of mass segregation but for compact binaries the effects of segregation dominate and the inner binary fraction increases during the cluster evolution. We explore the variation of the difference between the FG an...

  7. Binary is Good: A Binary Inference Framework for Primary User Separation in Cognitive Radio Networks

    CERN Document Server

    Nguyen, Huy; Han, Zhu

    2010-01-01

    Primary users (PU) separation concerns with the issues of distinguishing and characterizing primary users in cognitive radio (CR) networks. We argue the need for PU separation in the context of collaborative spectrum sensing and monitor selection. In this paper, we model the observations of monitors as boolean OR mixtures of underlying binary latency sources for PUs, and devise a novel binary inference algorithm for PU separation. Simulation results show that without prior knowledge regarding PUs' activities, the algorithm achieves high inference accuracy. An interesting implication of the proposed algorithm is the ability to effectively represent n independent binary sources via (correlated) binary vectors of logarithmic length.

  8. Dixie Valley Bottoming Binary Unit

    Energy Technology Data Exchange (ETDEWEB)

    McDonald, Dale [Terra-Gen Sierra Holdings, LLC, Reno, NV (United States)

    2014-12-21

    This binary plant is the first air cooled, high-output refrigeration based waste heat recovery cycle in the industry. Its working fluid is environmentally friendly and as such, the permits that would be required with a hydrocarbon based cycle are not necessary. The unit is largely modularized, meaning that the unit’s individual skids were assembled in another location and were shipped via truck to the plant site. The Air Cooled Condensers (ACC), equipment piping, and Balance of Plant (BOP) piping were constructed at site. This project further demonstrates the technical feasibility of using low temperature brine for geothermal power utilization. The development of the unit led to the realization of low temperature, high output, and environmentally friendly heat recovery systems through domestic research and engineering. The project generates additional renewable energy, resulting in cleaner air and reduced carbon dioxide emissions. Royalty and tax payments to governmental agencies will increase, resulting in reduced financial pressure on local entities. The major components of the unit were sourced from American companies, resulting in increased economic activity throughout the country.

  9. Copula-based bivariate binary response models

    OpenAIRE

    Winkelmann, Rainer

    2009-01-01

    The bivariate probit model is frequently used for estimating the effect of an endogenous binary regressor on a binary outcome variable. This paper discusses simple modifications that maintain the probit assumption for the marginal distributions while introducing non-normal dependence among the two variables using copulas. Simulation results and evidence from two applications, one on the effect of insurance status on ambulatory expenditure and one on the effect of completing high school on sub...

  10. Diffusion in ordered binary solid systems

    International Nuclear Information System (INIS)

    This thesis contains contributions to the field of diffusion in ordered binary solid systems. An extensive experimental investigation of the self diffusion in CoGa is presented. The results of these diffusion measurements strongly suggest that a substantial part of the atomic migration is caused by a new type of defect. A quantitative description of the atomic displacements via this defect is given. Finally computer simulations are presented of diffusion and ordering in binary solid systems. (Auth.)

  11. GAIA survey of galactic eclipsing binaries

    OpenAIRE

    Zwitter, Tomaz

    2002-01-01

    General importance and capabilities of observations of eclipsing binaries by the forthcoming ESA mission GAIA are discussed. Availability of spectroscopic observations and a large number of photometric bands on board will make it possible to reliably determine physical parameters for $\\sim 10^5$ binary stars. It is stressed that current methods of object by object analysis will have to be modified and included in an automatic analysis pipeline.

  12. Binary nature of the Barium stars

    International Nuclear Information System (INIS)

    We present radial-velocity spectrometer observations that indicate that Ba II stars are binary systems. The secondary stars of these systems have low masses, consistent with their being degenerate objects which have lost mass onto their primaries in a previous stage of evolution. It is suggested that the Population II equivalents, the CH stars, may also be binary systems. This may be related to the fact that they are found only in globular clusters of the lowest central concentration

  13. Binary compact object inspiral: Detection expectations

    Indian Academy of Sciences (India)

    Vassiliki Kalogera

    2004-10-01

    We review the current estimates of binary compact object inspiral rates in particular in view of the recently discovered highly relativistic binary pulsar J0737-3039. One of the robust results is that, because of this discovery, the rate estimates for binary neutron stars have increased by a factor of 6-7 independent of any uncertainties related to the pulsar population properties. This rate increase has dramatic implications for gravitational wave detectors. For initial LIGO, the most probable detection rates for double neutron star (DNS) inspirals is 1 event/(5{250) yr; at 95% confidence we obtain rates up to 1/1.5 yr. For advanced LIGO, the most probable rates are 20-1000 events/yr. These predictions, for the first time, bring the expectations for DNS detections by initial LIGO to the astrophysically relevant regime. We also use our models to predict that the large-scale Parkes multibeam pulsar survey with acceleration searches could detect an average of three to four binary pulsars similar to those known at present. In comparison, rate estimates for binaries with black holes are derived based on binary evolution calculation, and based on the optimistic ends of the ranges, remain an important candidate for inspiral detection in the next few years. We also consider another aspect of the detectability of binary inspiral: the effect of precession on the detection efficiency of astrophysically relevant binaries. Based on our current astrophysical expectations, large tilt angles are not favored. As a result the decrease in detection rate varies rather slowly with black hole spin magnitude and is within 20-30% of the maximum possible values.

  14. Texture classification by texton: statistical versus binary.

    Directory of Open Access Journals (Sweden)

    Zhenhua Guo

    Full Text Available Using statistical textons for texture classification has shown great success recently. The maximal response 8 (Statistical_MR8, image patch (Statistical_Joint and locally invariant fractal (Statistical_Fractal are typical statistical texton algorithms and state-of-the-art texture classification methods. However, there are two limitations when using these methods. First, it needs a training stage to build a texton library, thus the recognition accuracy will be highly depended on the training samples; second, during feature extraction, local feature is assigned to a texton by searching for the nearest texton in the whole library, which is time consuming when the library size is big and the dimension of feature is high. To address the above two issues, in this paper, three binary texton counterpart methods were proposed, Binary_MR8, Binary_Joint, and Binary_Fractal. These methods do not require any training step but encode local feature into binary representation directly. The experimental results on the CUReT, UIUC and KTH-TIPS databases show that binary texton could get sound results with fast feature extraction, especially when the image size is not big and the quality of image is not poor.

  15. Spectroscopic subsystems in nearby wide binaries

    CERN Document Server

    Tokovinin, Andrei

    2015-01-01

    Radial velocity (RV) monitoring of solar-type visual binaries has been conducted at the CTIO/SMARTS 1.5-m telescope to study short-period systems. Data reduction is described, mean and individual RVs of 163 observed objects are given. New spectroscopic binaries are discovered or suspected in 17 objects, for some of them orbital periods could be determined. Subsystems are efficiently detected even in a single observation by double lines and/or by the RV difference between the components of visual binaries. The potential of this detection technique is quantified by simulation and used for statistical assessment of 96 wide binaries within 67pc. It is found that 43 binaries contain at least one subsystem and the occurrence of subsystems is equally probable in either primary or secondary components. The frequency of subsystems and their periods match the simple prescription proposed by the author (2014, AJ, 147, 87). The remaining 53 simple wide binaries with a median projected separation of 1300AU have the distri...

  16. Coronal activity from the ASAS eclipsing binaries

    CERN Document Server

    Szczygiel, D M; Paczynski, B; Pojmanski, G; Pilecki, B

    2008-01-01

    We combine the catalogue of eclipsing binaries from the All Sky Automated Survey (ASAS) with the ROSAT All Sky Survey (RASS). The combination results in 836 eclipsing binaries that display coronal activity and is the largest sample of active binary stars assembled to date. By using the (V-I) colors of the ASAS eclipsing binary catalogue, we are able to determine the distances and thus bolometric luminosities for the majority of eclipsing binaries that display significant stellar activity. A typical value for the ratio of soft X-ray to bolometric luminosity is L_X/L_bol ~ a few x 10^-4, similar to the ratio of soft X-ray to bolometric flux F_X/F_bol in the most active regions of the Sun. Unlike rapidly rotating isolated late-type dwarfs -- stars with significant outer convection zones -- a tight correlation between Rossby number and activity of eclipsing binaries is absent. We find evidence for the saturation effect and marginal evidence for the so-called "super-saturation" phenomena. Our work shows that wide-...

  17. Spectroscopic Orbits for Kepler FOV Eclipsing Binaries

    Science.gov (United States)

    Matson, Rachel A.; Gies, Douglas R.; Williams, Stephen J.; Guo, Zhao

    2013-02-01

    We are currently involved in a four year program of precise eclipsing binary photometry with the NASA Kepler Observatory. Our goal is to search for variations in minimum light timing for intermediate mass eclipsing binaries. Such periodic variations will reveal the reflex motion caused by any distant, low mass object that orbits the close binary. it Kepler's unprecedented accuracy and continuous observations provide a unique opportunity to detect the low mass companions that are predicted to result from the angular momentum of the natal cloud. The goal of this proposal is to obtain blue spectra of short period (0.9-6d) eclipsing binaries, derive radial velocities, and produce a double-lined spectroscopic orbit (as well as estimates of the stellar effective temperatures, gravities, and metallicities). Combined with the it Kepler light curve, we will determine very accurate masses and radii for the members of the close binary, which will yield the mass-inclination product M_3 sin i for any companions detected by light travel time or other effects. An extended sample of eclipsing binaries with longer periods (up to 50d) is now being investigated to test whether the presence of a tertiary companion declines with increasing period. We propose to obtain a single spectrum at quadrature for the brightest 48 stars in this expanded sample to characterize the effective temperatures and total mass contained in these systems.

  18. Design and Implementation of BDB, the Binary Star Database

    Science.gov (United States)

    Kaygorodov, P.; Kovaleva, D.; Malkov, O.

    2013-02-01

    The Binary star DataBase (BDB, http://bdb.inasan.ru) is created to provide liasons between binary star catalogue data of various origin. Information on different observational types of binaries is obtained from heterogeneous sources of data - astronomical catalogues and surveys. The database allows a variety of query options useful for selected stars investigation purposes, for binary observations planning, and for construction and examination of binary datasets with certain characteristics.

  19. Exploring the Birth of Binary Stars

    Science.gov (United States)

    Kohler, Susanna

    2016-08-01

    More than half of all stars are thought to be in binary or multiple star systems. But how do these systems form? The misaligned spins of some binary protostars might provide a clue.Two Formation ModelsIts hard to tell how multiple-star systems form, since these systems are difficult to observe in their early stages. But based on numerical simulations, there are two proposed models for the formation of stellar binaries:Turbulent fragmentationTurbulence within a single core leads to multiple dense clumps. These clumps independently collapse to form stars that orbit each other.Disk fragmentationGravitational instabilities in a massive accretion disk cause the formation of a smaller, secondary disk within the first, resulting in two stars that orbit each other.Log column density for one of the authors simulated binary systems, just after the formation of two protostars. Diamonds indicate the protostar positions. [Adapted from Offner et al. 2016]Outflows as CluesHow can we differentiate between these formation mechanisms? Led by Stella Offner (University of Massachusetts), a team of scientists has suggested that the key isto examine the alignment of the stars protostellar outflows jets that are often emitted from the poles of young, newly forming stars.Naively, wed expect that disk fragmentation would produce binary stars with common angular momentum. As the stars spins would be aligned, they would therefore also launch protostellar jets that were aligned with each other. Turbulent fragmentation, on the other hand, would cause the stars to have independent angular momentum. This would lead to randomly oriented spins, so the protostellar jets would be misaligned.Snapshots from the authors simulations. Left panel of each pair: column density; green arrows giveprotostellar spin directions. Right panel: synthetic observations produced from the simulations; cyan arrows giveprotostellar outflow directions. [Offner et al. 2016]Simulations of FragmentationIn order to better

  20. New spectroscopic binary companions of giant stars and updated metallicity distribution for binary systems

    CERN Document Server

    Bluhm, P; Vanzi, L; Soto, M G; Vos, J; Wittenmyer, R A; Olivares, F; Drass, H; Mennickent, R E; Vuckovic, M; Rojo, P; Melo, C H F

    2016-01-01

    We report the discovery of 24 spectroscopic binary companions to giant stars. We fully constrain the orbital solution for 6 of these systems. We cannot unambiguously derive the orbital elements for the remaining stars because the phase coverage is incomplete. Of these stars, 6 present radial velocity trends that are compatible with long-period brown dwarf companions.The orbital solutions of the 24 binary systems indicate that these giant binary systems have a wide range in orbital periods, eccentricities, and companion masses. For the binaries with restricted orbital solutions, we find a range of orbital periods of between $\\sim$ 97-1600 days and eccentricities of between $\\sim$ 0.1-0.4. In addition, we studied the metallicity distribution of single and binary giant stars. We computed the metallicity of a total of 395 evolved stars, 59 of wich are in binary systems. We find a flat distribution for these binary stars and therefore conclude that stellar binary systems, and potentially brown dwarfs, have a diffe...

  1. Birth of Massive Black Hole Binaries

    Energy Technology Data Exchange (ETDEWEB)

    Colpi, M.; /Milan Bicocca U.; Dotti, M.; /Insubria U., Como; Mayer, L.; /Zurich, ETH; Kazantzidis, S.; /KIPAC, Menlo Park

    2007-11-19

    If massive black holes (BHs) are ubiquitous in galaxies and galaxies experience multiple mergers during their cosmic assembly, then BH binaries should be common albeit temporary features of most galactic bulges. Observationally, the paucity of active BH pairs points toward binary lifetimes far shorter than the Hubble time, indicating rapid inspiral of the BHs down to the domain where gravitational waves lead to their coalescence. Here, we review a series of studies on the dynamics of massive BHs in gas-rich galaxy mergers that underscore the vital role played by a cool, gaseous component in promoting the rapid formation of the BH binary. The BH binary is found to reside at the center of a massive self-gravitating nuclear disc resulting from the collision of the two gaseous discs present in the mother galaxies. Hardening by gravitational torques against gas in this grand disc is found to continue down to sub-parsec scales. The eccentricity decreases with time to zero and when the binary is circular, accretion sets in around the two BHs. When this occurs, each BH is endowed with it own small-size ({approx}< 0.01 pc) accretion disc comprising a few percent of the BH mass. Double AGN activity is expected to occur on an estimated timescale of {approx}< 1 Myr. The double nuclear point-like sources that may appear have typical separation of {approx}< 10 pc, and are likely to be embedded in the still ongoing starburst. We note that a potential threat of binary stalling, in a gaseous environment, may come from radiation and/or mechanical energy injections by the BHs. Only short-lived or sub-Eddington accretion episodes can guarantee the persistence of a dense cool gas structure around the binary necessary for continuing BH inspiral.

  2. Gravitational wave background from binary systems

    International Nuclear Information System (INIS)

    Basic aspects of the background of gravitational waves and its mathematical characterization are reviewed. The spectral energy density parameter Ω(f), commonly used as a quantifier of the background, is derived for an ensemble of many identical sources emitting at different times and locations. For such an ensemble, Ω(f) is generalized to account for the duration of the signals and of the observation, so that one can distinguish the resolvable and unresolvable parts of the background. The unresolvable part, often called confusion noise or stochastic background, is made by signals that cannot be either individually identified or subtracted out of the data. To account for the resolvability of the background, the overlap function is introduced. This function is a generalization of the duty cycle, which has been commonly used in the literature, in some cases leading to incorrect results. The spectra produced by binary systems (stellar binaries and massive black hole binaries) are presented over the frequencies of all existing and planned detectors. A semi-analytical formula for Ω(f) is derived in the case of stellar binaries (containing white dwarfs, neutron stars or stellar-mass black holes). Besides a realistic expectation of the level of background, upper and lower limits are given, to account for the uncertainties in some astrophysical parameters such as binary coalescence rates. One interesting result concerns all current and planned ground-based detectors (including the Einstein Telescope). In their frequency range, the background of binaries is resolvable and only sporadically present. In other words, there is no stochastic background of binaries for ground-based detectors.

  3. Massive gaseous discs around SMBH binaries: Binary decay and tidal disruptions

    Directory of Open Access Journals (Sweden)

    Brem P.

    2012-12-01

    Full Text Available We investigate the evolution of black hole binaries embedded within geometrically thin gas discs. Our results imply that such discs can produce black hole mergers for relatively low-mass binaries, and that a significant population of eccentric binaries might exist at separations of a few 0.01 pc. These binaries may be detectable due to the time-variable accretion on to the black holes. If the disc fragments, then the newly-born stars will continue driving the binary to its coalescence, although at a slower rate. Interestingly, our preliminary analysis shows that these stars will be disrupted at a rate of ∼10−4–2 · 10−5 events per year per system.

  4. Nonconservative Mass Transfer in Massive Binaries and the Formation of Wolf-Rayet+O Binaries

    CERN Document Server

    Shao, Yong

    2016-01-01

    The mass transfer efficiency during the evolution of massive binaries is still uncertain. We model the mass transfer processes in a grid of binaries to investigate the formation of Wolf-Rayet+O (WR+O) binaries, taking into account two kinds of non-conservative mass transfer models: Model I with rotation-dependent mass accretion and Model II of half mass accretion. Generally the mass transfer in Model I is more inefficient, with the average efficiency in a range of $\\sim0.2-0.7$ and $ \\lesssim0.2 $ for Case A and Case B mass transfer, respectively. We present the parameter distributions for the descendant WR+O binaries. By comparing the modeled stellar mass distribution with the observed Galactic WR+O binaries, we find that highly non-conservative mass transfer is required.

  5. Stability of multiplanet systems in binaries

    CERN Document Server

    Marzari, F

    2016-01-01

    When exploring the stability of multiplanet systems in binaries, two parameters are normally exploited: the critical semimajor axis ac computed by Holman and Wiegert (1999) within which planets are stable against the binary perturbations, and the Hill stability limit Delta determining the minimum separation beyond which two planets will avoid mutual close encounters. Our aim is to test whether these two parameters can be safely applied in multiplanet systems in binaries or if their predictions fail for particular binary orbital configurations. We have used the frequency map analysis (FMA) to measure the diffusion of orbits in the phase space as an indicator of chaotic behaviour. First we revisited the reliability of the empirical formula computing ac in the case of single planets in binaries and we find that, in some cases, it underestimates by 10-20% the real outer limit of stability. For two planet systems, the value of Delta is close to that computed for planets around single stars, but the level of chaoti...

  6. Orbital eccentricities in primordial black hole binaries

    Science.gov (United States)

    Cholis, Ilias; Kovetz, Ely D.; Ali-Haïmoud, Yacine; Bird, Simeon; Kamionkowski, Marc; Muñoz, Julian B.; Raccanelli, Alvise

    2016-10-01

    It was recently suggested that the merger of ˜30 M⊙ primordial black holes (PBHs) may provide a significant number of events in gravitational-wave observatories over the next decade, if they make up an appreciable fraction of the dark matter. Here we show that measurement of the eccentricities of the inspiralling binary black holes can be used to distinguish these binaries from those produced by more traditional astrophysical mechanisms. These PBH binaries are formed on highly eccentric orbits and can then merge on time scales that in some cases are years or less, retaining some eccentricity in the last seconds before the merger. This is to be contrasted with massive-stellar-binary, globular-cluster, or other astrophysical origins for binary black holes (BBHs) in which the orbits have very effectively circularized by the time the BBH enters the observable LIGO window. Here we discuss the features of the gravitational-wave signals that indicate this eccentricity and forecast the sensitivity of LIGO and the Einstein Telescope to such effects. We show that if PBHs make up the dark matter, then roughly one event should have a detectable eccentricity given LIGO's expected sensitivity and observing time of six years. The Einstein Telescope should see O (10 ) such events after ten years.

  7. Urey Prize Lecture: Binary Minor Planets

    Science.gov (United States)

    Margot, J. L.

    2004-11-01

    The discovery of binary systems in the near-Earth, main belt, and Kuiper belt populations provides an abundance of new data that expand our knowledge of the physics and chemistry of the solar system. Binary minor planets form as a result of collisional, tidal, and capture processes that are important to study as they play major roles in the formation and evolution of planetary systems. The frequency of occurrence of such processes directly reflects the dynamical environment in the various populations. Observations of binaries provide a powerful way to measure the bulk properties of small bodies, which in turn lead to inferences about their composition and internal structure. These data may offer a rare glimpse of what physical and chemical conditions prevailed when protoplanets formed, and what subsequent evolution took place. In the case of the Kuiper Belt, the study of a handful of binaries forces us to rethink how dense and how bright these bodies are, and to significantly revise our current mass estimates for the entire population. The number of known binary minor planets has increased dramatically over the past few years, with roughly ten new discoveries each year. I will attempt to summarize recent developments, with examples drawn from my observations with the Hubble, Palomar, Keck, Arecibo and Goldstone telescopes.

  8. The binary white dwarf LHS 3236

    Energy Technology Data Exchange (ETDEWEB)

    Harris, Hugh C.; Dahn, Conard C.; Canzian, Blaise; Guetter, Harry H.; Levine, Stephen E.; Luginbuhl, Christian B.; Monet, Alice K. B.; Stone, Ronald C.; Subasavage, John P.; Tilleman, Trudy; Walker, Richard L. [US Naval Observatory, 10391 West Naval Observatory Road, Flagstaff, AZ 86001-8521 (United States); Dupuy, Trent J.; Liu, Michael C. [Institute for Astronomy, University of Hawaii, 2680 Woodlawn Drive, Honolulu, HI 96822 (United States); Hartkopf, William I. [US Naval Observatory, 3450 Massachusetts Avenue, N.W., Washington, DC 20392-5420 (United States); Ireland, Michael J. [Department of Physics and Astronomy, Macquarie University, New South Wales, NSW 2109 (Australia); Leggett, S. K., E-mail: hch@nofs.navy.mil [Gemini Observatory, 670 N. Aohoku Place, Hilo, HI 96720 (United States)

    2013-12-10

    The white dwarf LHS 3236 (WD1639+153) is shown to be a double-degenerate binary, with each component having a high mass. Astrometry at the U.S. Naval Observatory gives a parallax and distance of 30.86 ± 0.25 pc and a tangential velocity of 98 km s{sup –1}, and reveals binary orbital motion. The orbital parameters are determined from astrometry of the photocenter over more than three orbits of the 4.0 yr period. High-resolution imaging at the Keck Observatory resolves the pair with a separation of 31 and 124 mas at two epochs. Optical and near-IR photometry give a set of possible binary components. Consistency of all data indicates that the binary is a pair of DA stars with temperatures near 8000 and 7400 K and with masses of 0.93 and 0.91 M {sub ☉}; also possible is a DA primary and a helium DC secondary with temperatures near 8800 and 6000 K and with masses of 0.98 and 0.69 M {sub ☉}. In either case, the cooling ages of the stars are ∼3 Gyr and the total ages are <4 Gyr. The combined mass of the binary (1.66-1.84 M {sub ☉}) is well above the Chandrasekhar limit; however, the timescale for coalescence is long.

  9. A Model for Contact Binary Systems

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    A model for contact binary systems is presented, which incorporates the following special features: a) The energy exchange between the components is based on the understanding that the energy exchange is due to the release of potential, kinetic and thermal energies of the exchanged mass. b) A special form of mass and angular momentum loss occurring in contact binaries is losses via the outer Lagrangian point. c) The effects of spin, orbital rotation and tidal action on the stellar structure as well as the effect of meridian circulation on the mixing of the chemical elements are considered. d) The model is valid not only for low-mass contact binaries but also for high-mass contact binaries. For illustration, we used the model to trace the evolution of a massive binary system consisting of one 12M⊙ and one 5M⊙ star. The result shows that the start and end of the contact stage fall within the semi-detached phase during which the primary continually transfers mass to the secondary. The time span of the contact stage is short and the mass transfer rate is very large. Therefore, the contact stage can be regarded as a special part of the semi-detached phase with a large mass transfer rate. Both mass loss through the outer Lagrangian point and oscillation between contact and semi-contact states can occur during the contact phase, and the effective temperatures of the primary and the secondary are almost equal.

  10. An interferometric view of binary stars

    CERN Document Server

    Boffin, Henri M J

    2016-01-01

    The study of binary stars is critical to apprehend many of the most interesting classes of stars. Moreover, quite often, the study of stars in binary systems is our only mean to constrain stellar properties, such as masses and radii. Unfortunately, a great fraction of the most interesting binaries are so compact that they can only be apprehended by high-resolution techniques, mostly by interferometry. I present some results highlighting the use of interferometry in the study of binary stars, from finding companions and deriving orbits, determining the mass and radius of stars, to studying mass transfer in symbiotic stars, and tackling luminous blue variables. In particular, I show how interferometric studies using the PIONIER instrument have allowed us to confirm a dichotomy within symbiotic stars, obtain masses of stars with a precision better than 1%, and help us find a new Eta Carinae-like system. I will also illustrate the benefits for the study of binary stars one would get from upgrading the VLT Interfe...

  11. Planet scattering around binaries: ejections, not collisions

    Science.gov (United States)

    Smullen, Rachel A.; Kratter, Kaitlin M.; Shannon, Andrew

    2016-09-01

    Transiting circumbinary planets discovered by Kepler provide unique insight into binary star and planet formation. Several features of this new found population, for example the apparent pile-up of planets near the innermost stable orbit, may distinguish between formation theories. In this work, we determine how planet-planet scattering shapes planetary systems around binaries as compared to single stars. In particular, we look for signatures that arise due to differences in dynamical evolution in binary systems. We carry out a parameter study of N-body scattering simulations for four distinct planet populations around both binary and single stars. While binarity has little influence on the final system multiplicity or orbital distribution, the presence of a binary dramatically affects the means by which planets are lost from the system. Most circumbinary planets are lost due to ejections rather than planet-planet or planet-star collisions. The most massive planet in the system tends to control the evolution. Systems similar to the only observed multiplanet circumbinary system, Kepler-47, can arise from much more tightly packed, unstable systems. Only extreme initial conditions introduce differences in the final planet populations. Thus, we suggest that any intrinsic differences in the populations are imprinted by formation.

  12. Orbital eccentricities in primordial black holes binaries

    CERN Document Server

    Cholis, Ilias; Ali-Haïmoud, Yacine; Bird, Simeon; Kamionkowski, Marc; Muñoz, Julian B; Raccanelli, Alvise

    2016-01-01

    It was recently suggested that the merger of $\\sim30\\,M_\\odot$ primordial black holes (PBHs) may provide a significant number of events in gravitational-wave observatories over the next decade, if they make up an appreciable fraction of the dark matter. Here we show that measurement of the eccentricities of the inspiralling binary black holes can be used to distinguish these binaries from those produced by more traditional astrophysical mechanisms. These PBH binaries are formed on highly eccentric orbits and can then merge on timescales that in some cases are years or less, retaining some eccentricity in the last seconds before the merger. This is to be contrasted with massive-stellar-binary, globular-cluster, or other astrophysical origins for binary black holes (BBHs) in which the orbits have very effectively circularized by the time the BBH enters the observable LIGO window. Here we discuss the features of the gravitational-wave signals that indicate this eccentricity and forecast the sensitivity of LIGO a...

  13. Dual-selection for evolution of in vivo functional aptazymes as riboswitch parts.

    Science.gov (United States)

    Goler, Jonathan A; Carothers, James M; Keasling, Jay D

    2014-01-01

    Both synthetic biology and metabolic engineering are aided by the development of genetic control parts. One class of riboswitch parts that has great potential for sensing and regulation of protein levels is aptamer-coupled ribozymes (aptazymes). These devices are comprised of an aptamer domain selected to bind a particular ligand, a ribozyme domain, and a communication module that regulates the ribozyme activity based on the state of the aptamer. We describe a broadly applicable method for coupling a novel, newly selected aptamer to a ribozyme to generate functional aptazymes via in vitro and in vivo selection. To illustrate this approach, we describe experimental procedures for selecting aptazymes assembled from aptamers that bind p-amino-phenylalanine and a hammerhead ribozyme. Because this method uses selection, it does not rely on sequence-specific design and thus should be generalizable for the generation of in vivo operational aptazymes that respond to any targeted molecules. PMID:24549623

  14. INTEGRAL & RXTE View of Gamma-ray Binaries

    OpenAIRE

    Jian LI; Torres, Diego F.; Zhang, Shu; WANG, JIANMIN

    2013-01-01

    Gamma-ray binaries are X-ray binaries with gamma-ray emissions. Their multi-wavelength emissions range from radio, optical, X-ray and to very high energy (TeV). X-ray emissions are crucial to understand the nature of gamma-ray binaries. INTEGRAL and RXTE have covered and monitored most of the gamma-ray binaries in hard and soft X-rays. Here we report the results of several gamma-ray binaries and possible gamma-ray binaries from INTEGRAL and RXTE.

  15. Assessment of metal-assisted nucleophile activation in the hepatitis delta virus ribozyme from molecular simulation and 3D-RISM.

    Science.gov (United States)

    Radak, Brian K; Lee, Tai-Sung; Harris, Michael E; York, Darrin M

    2015-09-01

    The hepatitis delta virus ribozyme is an efficient catalyst of RNA 2'-O-transphosphorylation and has emerged as a key experimental system for identifying and characterizing fundamental features of RNA catalysis. Recent structural and biochemical data have led to a proposed mechanistic model whereby an active site Mg(2+) ion facilitates deprotonation of the O2' nucleophile, and a protonated cytosine residue (C75) acts as an acid to donate a proton to the O5' leaving group as noted in a previous study. This model assumes that the active site Mg(2+) ion forms an inner-sphere coordination with the O2' nucleophile and a nonbridging oxygen of the scissile phosphate. These contacts, however, are not fully resolved in the crystal structure, and biochemical data are not able to unambiguously exclude other mechanistic models. In order to explore the feasibility of this model, we exhaustively mapped the free energy surfaces with different active site ion occupancies via quantum mechanical/molecular mechanical (QM/MM) simulations. We further incorporate a three-dimensional reference interaction site model for the solvated ion atmosphere that allows these calculations to consider not only the rate associated with the chemical steps, but also the probability of observing the system in the presumed active state with the Mg(2+) ion bound. The QM/MM results predict that a pathway involving metal-assisted nucleophile activation is feasible based on the rate-controlling transition state barrier departing from the presumed metal-bound active state. However, QM/MM results for a similar pathway in the absence of Mg(2+) are not consistent with experimental data, suggesting that a structural model in which the crystallographically determined Mg(2+) is simply replaced with Na(+) is likely incorrect. It should be emphasized, however, that these results hinge upon the assumption of the validity of the presumed Mg(2+)-bound starting state, which has not yet been definitively verified

  16. Gravitational waves from spinning eccentric binaries

    CERN Document Server

    Csizmadia, Péter; Rácz, István; Vasúth, Mátyás

    2012-01-01

    This paper is to introduce a new software called CBwaves which provides a fast and accurate computational tool to determine the gravitational waveforms yielded by generic spinning binaries of neutron stars and/or black holes on eccentric orbits. This is done within the post-Newtonian (PN) framework by integrating the equations of motion and the spin precession equations while the radiation field is determined by a simultaneous evaluation of the analytic waveforms. In applying CBwaves various physically interesting scenarios have been investigated. In particular, we have studied the appropriateness of the adiabatic approximation, and justified that the energy balance relation is indeed insensitive to the specific form of the applied radiation reaction term. By studying eccentric binary systems it is demonstrated that circular template banks are very ineffective in identifying binaries even if they possess tiny residual orbital eccentricity. In addition, by investigating the validity of the energy balance relat...

  17. Optimized Reversible Binary-Coded Decimal Adders

    DEFF Research Database (Denmark)

    Thomsen, Michael Kirkedal; Glück, Robert

    2008-01-01

    Abstract Babu and Chowdhury [H.M.H. Babu, A.R. Chowdhury, Design of a compact reversible binary coded decimal adder circuit, Journal of Systems Architecture 52 (5) (2006) 272-282] recently proposed, in this journal, a reversible adder for binary-coded decimals. This paper corrects and optimizes...... in reversible logic design by drastically reducing the number of garbage bits. Specialized designs benefit from support by reversible logic synthesis. All circuit components required for optimizing the original design could also be synthesized successfully by an implementation of an existing synthesis algorithm....... Keywords: Reversible logic circuit; Full-adder; Half-adder; Parallel adder; Binary-coded decimal; Application of reversible logic synthesis...

  18. Gravitational wave background from binary systems

    CERN Document Server

    Rosado, Pablo A

    2011-01-01

    Basic aspects of the background of gravitational waves and its mathematical characterization are reviewed. The spectral energy density parameter $\\Omega(f)$, commonly used as a quantifier of the background, is derived for an ensemble of many identical sources emitting at different times and locations. For such an ensemble, $\\Omega(f)$ is generalized to account for the duration of the signals and of the observation, so that one can distinguish the resolvable and unresolvable parts of the background. The unresolvable part, often called confusion noise or stochastic background, is made by signals that cannot be either individually identified or subtracted out of the data. To account for the resolvability of the background, the overlap function is introduced. This function is a generalization of the duty cycle, which has been commonly used in the literature, in some cases leading to incorrect results. The spectra produced by binary systems (stellar binaries and massive black hole binaries) are presented over the ...

  19. The Expressive Power of Binary Submodular Functions

    CERN Document Server

    Zivny, Stanislav; Jeavons, Peter G

    2008-01-01

    It has previously been an open problem whether all Boolean submodular functions can be decomposed into a sum of binary submodular functions over a possibly larger set of variables. This problem has been considered within several different contexts in computer science, including computer vision, artificial intelligence, and pseudo-Boolean optimisation. Using a connection between the expressive power of valued constraints and certain algebraic properties of functions, we answer this question negatively. Our results have several corollaries. First, we characterise precisely which submodular functions of arity 4 can be expressed by binary submodular functions. Next, we identify a novel class of submodular functions of arbitrary arities which can be expressed by binary submodular functions, and therefore minimised efficiently using a so-called expressibility reduction to the Min-Cut problem. More importantly, our results imply limitations on this kind of reduction and establish for the first time that it cannot be...

  20. Binary Code Disassembly for Reverse Engineering

    Directory of Open Access Journals (Sweden)

    Marius Popa

    2013-01-01

    Full Text Available The disassembly of binary file is used to restore the software application code in a readable and understandable format for humans. Further, the assembly code file can be used in reverse engineering processes to establish the logical flows of the computer program or its vulnerabilities in real-world running environment. The paper highlights the features of the binary executable files under the x86 architecture and portable format, presents issues of disassembly process of a machine code file and intermediate code, disassembly algorithms which can be applied to a correct and complete reconstruction of the source file written in assembly language, and techniques and tools used in binary code disassembly.

  1. Rapid Compact Binary Coalescence Parameter Estimation

    Science.gov (United States)

    Pankow, Chris; Brady, Patrick; O'Shaughnessy, Richard; Ochsner, Evan; Qi, Hong

    2016-03-01

    The first observation run with second generation gravitational-wave observatories will conclude at the beginning of 2016. Given their unprecedented and growing sensitivity, the benefit of prompt and accurate estimation of the orientation and physical parameters of binary coalescences is obvious in its coupling to electromagnetic astrophysics and observations. Popular Bayesian schemes to measure properties of compact object binaries use Markovian sampling to compute the posterior. While very successful, in some cases, convergence is delayed until well after the electromagnetic fluence has subsided thus diminishing the potential science return. With this in mind, we have developed a scheme which is also Bayesian and simply parallelizable across all available computing resources, drastically decreasing convergence time to a few tens of minutes. In this talk, I will emphasize the complementary use of results from low latency gravitational-wave searches to improve computational efficiency and demonstrate the capabilities of our parameter estimation framework with a simulated set of binary compact object coalescences.

  2. Binary Particle Model of Weak Interactions

    CERN Document Server

    Ndili, F N

    2011-01-01

    We introduce the new concept of binary particle as the basic matter unit that participates in weak interactions and not any one fermion singly. We state the quantum numbers of this binary particle, and show the concept leads us to a natural explanation of the standard model puzzle of the origin of flavor mixing and the CKM matrix. Certain other puzzles of the standard model such as the absence of flavor changing neutral currents (FCNC), are also explained naturally by the binary particle model. These puzzles are currently thought to be esoteric properties of electro weak interactions that have origins in physics beyond the standard model at some ultra high energy scales. We show that this is not necessarily the case.

  3. Modeling Flows Around Merging Black Hole Binaries

    CERN Document Server

    van Meter, James R; Miller, M Coleman; Reynolds, Christopher S; Centrella, Joan M; Baker, John G; Boggs, William D; Kelly, Bernard J; McWilliams, Sean T

    2009-01-01

    Coalescing massive black hole binaries are produced by the mergers of galaxies. The final stages of the black hole coalescence produce strong gravitational radiation that can be detected by the space-borne LISA. In cases where the black hole merger takes place in the presence of gas and magnetic fields, various types of electromagnetic signals may also be produced. Modeling such electromagnetic counterparts of the final merger requires evolving the behavior of both gas and fields in the strong-field regions around the black holes. We have taken a step towards solving this problem by mapping the flow of pressureless matter in the dynamic, 3-D general relativistic spacetime around the merging black holes. We find qualitative differences in collision and outflow speeds, including a signature of the merger when the net angular momentum of the matter is low, between the results from single and binary black holes, and between nonrotating and rotating holes in binaries. If future magnetohydrodynamic results confirm ...

  4. Nonlinear Tides in Close Binary Systems

    CERN Document Server

    Weinberg, Nevin N; Quataert, Eliot; Burkart, Josh

    2011-01-01

    We study the excitation and damping of tides in close binary systems, accounting for the leading order nonlinear corrections to linear tidal theory. These nonlinear corrections include two distinct effects: three-mode nonlinear interactions and nonlinear excitation of modes by the time-varying gravitational potential of the companion. This paper presents the formalism for studying nonlinear tides and studies the nonlinear stability of the linear tidal flow. Although the formalism is applicable to binaries containing stars, planets, or compact objects, we focus on solar type stars with stellar or planetary companions. Our primary results include: (1) The linear tidal solution often used in studies of binary evolution is unstable over much of the parameter space in which it is employed. More specifically, resonantly excited gravity waves are unstable to parametric resonance for companion masses M' > 10-100 M_Earth at orbital periods P = 1-10 days. The nearly static equilibrium tide is, however, parametrically s...

  5. Hybrid Black-Hole Binary Initial Data

    Science.gov (United States)

    Mundim, Bruno C.; Kelly, Bernard J.; Nakano, Hiroyuki; Zlochower, Yosef; Campanelli, Manuela

    2010-01-01

    "Traditional black-hole binary puncture initial data is conformally flat. This unphysical assumption is coupled with a lack of radiation signature from the binary's past life. As a result, waveforms extracted from evolutions of this data display an abrupt jump. In Kelly et al. [Class. Quantum Grav. 27:114005 (2010)], a new binary black-hole initial data with radiation contents derived in the post-Newtonian (PN) calculations was adapted to puncture evolutions in numerical relativity. This data satisfies the constraint equations to the 2.5PN order, and contains a transverse-traceless "wavy" metric contribution, violating the standard assumption of conformal flatness. Although the evolution contained less spurious radiation, there were undesired features; the unphysical horizon mass loss and the large initial orbital eccentricity. Introducing a hybrid approach to the initial data evaluation, we significantly reduce these undesired features."

  6. The Circulation Pattern in Simulated Contact Binaries

    Science.gov (United States)

    Motl, Patrick M.; Frank, J.; Tohline, J. E.

    2006-06-01

    We present a three-dimensional hydrodynamical simulation of an initially symmetric (equal mass) binary where both components are marginally in contact. The simulation evolves the binary through approximately 150 orbital periods and within the first 20 orbits, a global velocity field is established that carries material between both components. In the equatorial plane, the flow is along a figure eight pattern with streams of material sliding past one another in the neighborhood of the inner Lagrange point. For our chosen equation of state, mass transfer is ultimately unstable in this binary though the growth time is long compared to the orbital period. We are therefore able to observe that the circulation pattern, once established, is quite close to steady state. We explore the role that similar steady state flows may play in real contact systems.

  7. Memory effect from spinning unbound binaries

    CERN Document Server

    De Vittori, Lorenzo; Gupta, Anuradha; Jetzer, Philippe

    2014-01-01

    We present a recently developed prescription to obtain ready-to-use gravitational wave (GW) polarization states for spinning compact binaries on hyperbolic orbits. We include leading order spin-orbit interactions, invoking 1.5PN-accurate quasi-Keplerian parametrization for the radial part of the orbital dynamics. We also include radiation reaction effects on $h_+$ and $h_{\\times}$ during the interaction. In the GW signals from spinning binaries there is evidence of the memory effect in both polarizations, in contrast to the non-spinning case, where only the cross polarizations exhibits non-vanishing amplitudes at infinite time. We also compute 1PN-accurate GW polarization states for non-spinning compact binaries in unbound orbits in a fully parametric way, and compare them with existing waveforms.

  8. CALCULATING THE HABITABLE ZONE OF BINARY STAR SYSTEMS. I. S-TYPE BINARIES

    Energy Technology Data Exchange (ETDEWEB)

    Kaltenegger, Lisa [MPIA, Koenigstuhl 17, D-69117 Heidelberg (Germany); Haghighipour, Nader, E-mail: kaltenegger@mpia.de [Institute for Astronomy and NASA Astrobiology Institute, University of Hawaii-Manoa, Honolulu, HI 96822 (United States)

    2013-11-10

    We have developed a comprehensive methodology for calculating the boundaries of the habitable zone (HZ) of planet-hosting S-type binary star systems. Our approach is general and takes into account the contribution of both stars to the location and extent of the binary HZ with different stellar spectral types. We have studied how the binary eccentricity and stellar energy distribution affect the extent of the HZ. Results indicate that in binaries where the combination of mass-ratio and orbital eccentricity allows planet formation around a star of the system to proceed successfully, the effect of a less luminous secondary on the location of the primary's HZ is generally negligible. However, when the secondary is more luminous, it can influence the extent of the HZ. We present the details of the derivations of our methodology and discuss its application to the binary HZ around the primary and secondary main-sequence stars of an FF, MM, and FM binary, as well as two known planet-hosting binaries α Cen AB and HD 196886.

  9. CALCULATING THE HABITABLE ZONE OF BINARY STAR SYSTEMS. I. S-TYPE BINARIES

    International Nuclear Information System (INIS)

    We have developed a comprehensive methodology for calculating the boundaries of the habitable zone (HZ) of planet-hosting S-type binary star systems. Our approach is general and takes into account the contribution of both stars to the location and extent of the binary HZ with different stellar spectral types. We have studied how the binary eccentricity and stellar energy distribution affect the extent of the HZ. Results indicate that in binaries where the combination of mass-ratio and orbital eccentricity allows planet formation around a star of the system to proceed successfully, the effect of a less luminous secondary on the location of the primary's HZ is generally negligible. However, when the secondary is more luminous, it can influence the extent of the HZ. We present the details of the derivations of our methodology and discuss its application to the binary HZ around the primary and secondary main-sequence stars of an FF, MM, and FM binary, as well as two known planet-hosting binaries α Cen AB and HD 196886

  10. Automated analysis of eclipsing binary lightcurves with EBAS. II. Statistical analysis of OGLE LMC eclipsing binaries

    CERN Document Server

    Mazeh, T; Tamuz, O; Mazeh, Tsevi; North, Pierre; Tamuz, Omer

    2006-01-01

    In the first paper of this series we presented EBAS, a new fully automated algorithm to analyse the lightcurves of eclipsing binaries, based on the EBOP code. Here we apply the new algorithm to the whole sample of 2580 binaries found in the OGLE LMC photometric survey and derive the orbital elements for 1931 systems. To obtain the statistical properties of the short-period binaries of the LMC we construct a well defined subsample of 938 eclipsing binaries with main-sequence B-type primaries. Correcting for observational selection effects, we derive the distributions of the fractional radii of the two components and their sum, the brightness ratios and the periods of the short-period binaries. Somewhat surprisingly, the results are consistent with a flat distribution in log P between 2 and 10 days. We also estimate the total number of binaries in the LMC with the same characteristics, and not only the eclipsing binaries, to be about 5000. This figure leads us to suggest that 0.7 +- 0.4 percent of the main-sequ...

  11. Applications Of Binary Image Analysis Techniques

    Science.gov (United States)

    Tropf, H.; Enderle, E.; Kammerer, H. P.

    1983-10-01

    After discussing the conditions where binary image analysis techniques can be used, three new applications of the fast binary image analysis system S.A.M. (Sensorsystem for Automation and Measurement) are reported: (1) The human view direction is measured at TV frame rate while the subject's head is free movable. (2) Industrial parts hanging on a moving conveyor are classified prior to spray painting by robot. (3) In automotive wheel assembly, the eccentricity of the wheel is minimized by turning the tyre relative to the rim in order to balance the eccentricity of the components.

  12. Toroidal Horizons in Binary Black Hole Mergers

    OpenAIRE

    Bohn, Andy; Kidder, Lawrence E.; Teukolsky, Saul A.

    2016-01-01

    We find the first binary black hole event horizon with a toroidal topology. It had been predicted that generically the event horizons of merging black holes should briefly have a toroidal topology, but such a phase has never been seen prior to this work. In all previous binary black hole simulations, in the coordinate slicing used to evolve the black holes, the topology of the event horizon transitions directly from two spheres during the inspiral to a single sphere as the black holes merge. ...

  13. Binaries in the Hipparcos data: Keep digging

    OpenAIRE

    Pourbaix, D.; Jancart, S.; Jorissen, A.

    2004-01-01

    Among the 120 000 objects in the Hipparcos catalogue, only 235 were fitted with an orbital model. Besides these 235 original astrometric binaries, most Hipparcos entries with a known spectroscopic orbit (extrasolar planet or stellar companion) have now been re-processed, as part of the on-going construction of the 9th Catalogue of Spectroscopic Binary Orbits (SB9, available at http://sb9.astro.ulb.ac.be). The pitfalls and successes of this re-processing are discussed in various contexts, like...

  14. Rotation and massive close binary evolution

    CERN Document Server

    Langer, N; Yoon, S -C; Hunter, I; Brott, I; Lennon, D J; de Mink, S E; Verheijdt, M

    2008-01-01

    We review the role of rotation in massive close binary systems. Rotation has been advocated as an essential ingredient in massive single star models. However, rotation clearly is most important in massive binaries where one star accretes matter from a close companion, as the resulting spin-up drives the accretor towards critical rotation. Here, we explore our understanding of this process, and its observable consequences. When accounting for these consequences, the question remains whether rotational effects in massive single stars are still needed to explain the observations.

  15. Binary black holes' effects on electromagnetic fields.

    Science.gov (United States)

    Palenzuela, Carlos; Anderson, Matthew; Lehner, Luis; Liebling, Steven L; Neilsen, David

    2009-08-21

    In addition to producing gravitational waves, the dynamics of a binary black hole system could induce emission of electromagnetic radiation by affecting the behavior of plasmas and electromagnetic fields in their vicinity. We here study how the electromagnetic fields are affected by a pair of orbiting black holes through the merger. In particular, we show how the binary's dynamics induce a variability in possible electromagnetically induced emissions as well as a possible enhancement of electromagnetic fields during the late-merge and merger epochs. These time dependent features will likely leave their imprint in processes generating detectable emissions and can be exploited in the detection of electromagnetic counterparts of gravitational waves. PMID:19792706

  16. Speckle interferometric observations of close binary stars

    CERN Document Server

    Saha, S K; Yeswanth, L; Anbazhagan, P

    2002-01-01

    Speckle interferometric technique is employed to record a series of hundreds of short-exposure images of several close binary stars with sub-arcsecond separation through a narrow band filter at the Cassegrain focus of the 2.34 meter (m) Vainu Bappu telescope (VBT), situated at Vainu Bappu Observatory (VBO), Kavalur, India. The data are recorded sequentially by a Peltier-cooled intensified CCD camera with 10 ms exposure. The auto-correlation method is applied to determine the angular separations and position angles of these binary systems.

  17. Photometric Solutions of Some Contact ASAS Binaries

    CERN Document Server

    Gezer, I

    2015-01-01

    We present the first light curve solution of 6 contact binary systems which are chosen from the ASAS catalog. The photometric elements and the estimated absolute parameters of all systems are obtained with the light curve analyses. We calculated the values of degree of contact for the systems. The location of the targets on the Hertzsprung-Russell diagram and the mass-radius plane is compared to the other well-known contact binaries and the evolutionary status of the systems are also discussed.

  18. Photometric solutions of some contact ASAS binaries

    Science.gov (United States)

    Gezer, İ.; Bozkurt, Z.

    2016-04-01

    We present the first light curve solution of 6 contact binary systems which are chosen from the ASAS catalog. The photometric elements and the estimated absolute parameters of all systems are obtained with the light curve analyses. We calculated the values of degree of contact for the systems. The location of the targets on the Hertzsprung-Russell diagram and the mass-radius plane is compared to the other well-known contact binaries and the evolutionary status of the systems are also discussed.

  19. Thermodynamics of binary gas adsorption in nanopores.

    Science.gov (United States)

    Dutta, Sujeet; Lefort, Ronan; Morineau, Denis; Mhanna, Ramona; Merdrignac-Conanec, Odile; Saint-Jalmes, Arnaud; Leclercq, Théo

    2016-09-21

    MCM-41 nanoporous silicas show a very high selectivity for monoalcohols over aprotic molecules during adsorption of a binary mixture in the gas phase. We present here an original use of gravimetric vapour sorption isotherms to characterize the role played by the alcohol hydrogen-bonding network in the adsorption process. Beyond simple selectivity, vapour sorption isotherms measured for various compositions help to completely unravel at the molecular level the step by step adsorption mechanism of the binary system in the nanoporous solid, from the first monolayers to the complete liquid condensation. PMID:27532892

  20. VLSI binary multiplier using residue number systems

    Energy Technology Data Exchange (ETDEWEB)

    Barsi, F.; Di Cola, A.

    1982-01-01

    The idea of performing multiplication of n-bit binary numbers using a hardware based on residue number systems is considered. This paper develops the design of a VLSI chip deriving area and time upper bounds of a n-bit multiplier. To perform multiplication using residue arithmetic, numbers are converted from binary to residue representation and, after residue multiplication, the result is reconverted to the original notation. It is shown that the proposed design requires an area a=o(n/sup 2/ log n) and an execution time t=o(log/sup 2/n). 7 references.

  1. Quasi periodic oscillations in black hole binaries

    CERN Document Server

    Motta, S E

    2016-01-01

    Fast time variability is the most prominent characteristic of accreting systems and the presence of quasi periodic oscillations (QPOs) is a constant in all accreting systems, from cataclysmic variables to AGNs, passing through black hole and neutron star X-ray binaries and through the enigmatic ultra-luminous X-ray sources. In this paper I will briefly review the current knowledge of QPOs in black hole X-ray binaries, mainly focussing on their observed properties, but also mentioning the most important models that have been proposed to explain the origin of QPOs over the last decades.

  2. Spin supplementary conditions for spinning compact binaries

    CERN Document Server

    Mikóczi, Balázs

    2016-01-01

    We consider the different spin supplementary conditions (SSC) for a spinning compact binary with the leading-order spin-orbit (SO) interaction. The Lagrangian of the binary system can be constructed but it is acceleration-dependent in two cases of SSC. We rewrite the generalized Hamiltonian formalism proposed by Ostrogradsky and compute the conservative quantities and the dissipative part of relative motion during the gravitational radiation of each SSCs. We give the orbital elements and observed quantities of the SO dynamics, for instance the energy and the orbital angular momentum losses and waveforms and discuss their SSC dependence.

  3. Pulsations in close binaries: challenges and opportunities

    Directory of Open Access Journals (Sweden)

    Maceroni C.

    2015-01-01

    Full Text Available CoRoT and Kepler provided a precious by-product: a number of eclipsing binaries containing variable stars and, among these, non-radial pulsators. This providential occurrence allows combining independent information from two different phenomena whose synergy yields scientific results well beyond those from the single sources. In particular, the analysis of pulsations in eclipsing binary components throws light on the internal structure of the pulsating star, on the system evolution, and on the role of tidal forces in exciting the oscillations. The case study of the Kepler target KIC 3858884 is illustrative of the difficulties of analysis and of the achievements in this rapidly developing field.

  4. Inducing Risk Neutral Preferences with Binary Lotteries

    DEFF Research Database (Denmark)

    Harrison, Glenn W.; Martínez-Correa, Jimmy; Swarthout, J. Todd

    2013-01-01

    We evaluate the binary lottery procedure for inducing risk neutral behavior. We strip the experimental implementation down to bare bones, taking care to avoid any potentially confounding assumptions about behavior having to be made. In particular, our evaluation does not rely on the assumed...... validity of any strategic equilibrium behavior, or even the customary independence axiom. We show that subjects sampled from our population are generally risk averse when lotteries are defined over monetary outcomes, and that the binary lottery procedure does indeed induce a statistically significant shift...... toward risk neutrality. This striking result generalizes to the case in which subjects make several lottery choices and one is selected for payment....

  5. Binary Sparse Phase Retrieval via Simulated Annealing

    Directory of Open Access Journals (Sweden)

    Wei Peng

    2016-01-01

    Full Text Available This paper presents the Simulated Annealing Sparse PhAse Recovery (SASPAR algorithm for reconstructing sparse binary signals from their phaseless magnitudes of the Fourier transform. The greedy strategy version is also proposed for a comparison, which is a parameter-free algorithm. Sufficient numeric simulations indicate that our method is quite effective and suggest the binary model is robust. The SASPAR algorithm seems competitive to the existing methods for its efficiency and high recovery rate even with fewer Fourier measurements.

  6. Neutron-Star-Black-Hole Binaries Produced by Binary-Driven Hypernovae.

    Science.gov (United States)

    Fryer, Chris L; Oliveira, F G; Rueda, J A; Ruffini, R

    2015-12-01

    Binary-driven hypernovae (BdHNe) within the induced gravitational collapse paradigm have been introduced to explain energetic (E_{iso}≳10^{52}  erg), long gamma-ray bursts (GRBs) associated with type Ic supernovae (SNe). The progenitor is a tight binary composed of a carbon-oxygen (CO) core and a neutron-star (NS) companion, a subclass of the newly proposed "ultrastripped" binaries. The CO-NS short-period orbit causes the NS to accrete appreciable matter from the SN ejecta when the CO core collapses, ultimately causing it to collapse to a black hole (BH) and producing a GRB. These tight binaries evolve through the SN explosion very differently than compact binaries studied in population synthesis calculations. First, the hypercritical accretion onto the NS companion alters both the mass and the momentum of the binary. Second, because the explosion time scale is on par with the orbital period, the mass ejection cannot be assumed to be instantaneous. This dramatically affects the post-SN fate of the binary. Finally, the bow shock created as the accreting NS plows through the SN ejecta transfers angular momentum, braking the orbit. These systems remain bound even if a large fraction of the binary mass is lost in the explosion (well above the canonical 50% limit), and even large kicks are unlikely to unbind the system. Indeed, BdHNe produce a new family of NS-BH binaries unaccounted for in current population synthesis analyses and, although they may be rare, the fact that nearly 100% remain bound implies that they may play an important role in the compact merger rate, important for gravitational waves that, in turn, can produce a new class of ultrashort GRBs.

  7. BROWN DWARF BINARIES FROM DISINTEGRATING TRIPLE SYSTEMS

    Energy Technology Data Exchange (ETDEWEB)

    Reipurth, Bo [Institute for Astronomy and NASA Astrobiology Institute University of Hawaii, 640 N. Aohoku Place, Hilo, HI 96720 (United States); Mikkola, Seppo, E-mail: reipurth@ifa.hawaii.edu, E-mail: Seppo.Mikkola@utu.fi [Tuorla Observatory, University of Turku, Väisäläntie 20, Piikkiö (Finland)

    2015-04-15

    Binaries in which both components are brown dwarfs (BDs) are being discovered at an increasing rate, and their properties may hold clues to their origin. We have carried out 200,000 N-body simulations of three identical stellar embryos with masses drawn from a Chabrier IMF and embedded in a molecular core. The bodies are initially non-hierarchical and undergo chaotic motions within the cloud core, while accreting using Bondi–Hoyle accretion. The coupling of dynamics and accretion often leads to one or two dominant bodies controlling the center of the cloud core, while banishing the other(s) to the lower-density outskirts, leading to stunted growth. Eventually each system transforms either to a bound hierarchical configuration or breaks apart into separate single and binary components. The orbital motion is followed for 100 Myr. In order to illustrate 200,000 end-states of such dynamical evolution with accretion, we introduce the “triple diagnostic diagram,” which plots two dimensionless numbers against each other, representing the binary mass ratio and the mass ratio of the third body to the total system mass. Numerous freefloating BD binaries are formed in these simulations, and statistical properties are derived. The separation distribution function is in good correspondence with observations, showing a steep rise at close separations, peaking around 13 AU and declining more gently, reaching zero at separations greater than 200 AU. Unresolved BD triple systems may appear as wider BD binaries. Mass ratios are strongly peaked toward unity, as observed, but this is partially due to the initial assumptions. Eccentricities gradually increase toward higher values, due to the lack of viscous interactions in the simulations, which would both shrink the orbits and decrease their eccentricities. Most newborn triple systems are unstable and while there are 9209 ejected BD binaries at 1 Myr, corresponding to about 4% of the 200,000 simulations, this number has grown to

  8. Model-independent inference on compact-binary observations

    CERN Document Server

    Mandel, Ilya; Colonna, Andrea; Stevenson, Simon; Tiňo, Peter; Veitch, John

    2016-01-01

    The recent advanced LIGO detections of gravitational waves from merging binary black holes enhance the prospect of exploring binary evolution via gravitational-wave observations of a population of compact-object binaries. In the face of uncertainty about binary formation models, model-independent inference provides an appealing alternative to comparisons between observed and modelled populations. We describe a procedure for clustering in the multi-dimensional parameter space of observations that are subject to significant measurement errors. We apply this procedure to a mock data set of population-synthesis predictions for the masses of merging compact binaries convolved with realistic measurement uncertainties, and demonstrate that we can accurately distinguish subpopulations of binary neutron stars, binary black holes, and mixed black hole -- neutron star binaries.

  9. Evolution of Binary Stars in Multiple-Population Globular Clusters

    CERN Document Server

    Hong, Jongsuk; Sollima, Antonio; McMillan, Stephen L W; D'Antona, Franca; D'Ercole, Annibale

    2015-01-01

    The discovery of multiple stellar populations in globular clusters has implications for all the aspects of the study of these stellar systems. In this paper, by means of N-body simulations, we study the evolution of binary stars in multiple-population clusters and explore the implications of the initial differences in the spatial distribution of different stellar populations for the evolution and survival of their binary stars. Our simulations show that initial differences between the spatial distribution of first-generation (FG) and second-generation (SG) stars can leave a fingerprint in the current properties of the binary population. SG binaries are disrupted more efficiently than those of the FG population resulting in a global SG binary fraction smaller than that of the FG. As for surviving binaries, dynamical evolution produces a difference between the SG and the FG binary binding energy distribution with the SG population characterized by a larger fraction of high binding energy (more bound) binaries. ...

  10. Formation and evolution of X-ray binaries

    Institute of Scientific and Technical Information of China (English)

    2010-01-01

    We review recent progress in theoretical understanding of X-ray binaries,which has largely been driven by new observations.We select several topics including formation of compact low-mass X-ray binaries,the evolutionary connection between low-mass X-ray binaries and binary and millisecond radio pulsars,and ultraluminous X-ray sources,to illustrate the interplay between theories and observations.

  11. Orbits of Ten Visual Binary Stars

    Institute of Scientific and Technical Information of China (English)

    B.Novakovi(c)

    2007-01-01

    We present the orbits of ten visual binary stars:WDS 01015+6922.WDS 01424-0645,WDS 01461+6349,WDS 04374-0951,WDS 04478+5318,WDS 05255-0033,WDS 05491+6248,WDS 06404+4058,WDS 07479-1212,and WDS 18384+0850.We have also determined their masses,dynamical parallaxes and ephemerides.

  12. Chemically homogeneous evolution in massive binaries

    CERN Document Server

    de Mink, S E; Langer, N; Pols, O R

    2010-01-01

    Rotation can have severe consequences for the evolution of massive stars. It is now considered as one of the main parameters, alongside mass and metallicity that determine the final fate of single stars. In massive, fast rotating stars mixing processes induced by rotation may be so efficient that helium produced in the center is mixed throughout the envelope. Such stars evolve almost chemically homogeneously. At low metallicity they remain blue and compact, while they gradually evolve into Wolf-Rayet stars and possibly into progenitors of long gamma-ray bursts. In binaries this type of evolution may occur because of (I) tides in very close binaries, as a result of (II) spin up by mass transfer, as result of (III) a merger of the two stars and (IV) when one of the components in the binary was born with a very high initial rotation rate. As these stars stay compact, the evolutionary channels are very different from what classical binary evolutionary models predict. In this contribution we discuss examples of ne...

  13. Binaries are the best single stars

    CERN Document Server

    de Mink, S E; Izzard, R G

    2010-01-01

    Stellar models of massive single stars are still plagued by major uncertainties. Testing and calibrating against observations is essential for their reliability. For this purpose one preferably uses observed stars that have never experienced strong binary interaction, i.e. "true single stars". However, the binary fraction among massive stars is high and identifying "true single stars" is not straight forward. Binary interaction affects systems in such a way that the initially less massive star becomes, or appears to be, single. For example, mass transfer results in a widening of the orbit and a decrease of the luminosity of the donor star, which makes it very hard to detect. After a merger or disruption of the system by the supernova explosion, no companion will be present. The only unambiguous identification of "true single stars" is possible in detached binaries, which contain two main-sequence stars. For these systems we can exclude the occurrence of mass transfer since their birth. A further advantage is ...

  14. The Evolution of Relativistic Binary Progenitor Systems

    CERN Document Server

    Francischelli, G J; Brown, G E

    2001-01-01

    Relativistic binary pulsars, such as B1534+12 and B1913+16 are characterized by having close orbits with a binary separation of ~ 3 R_\\sun. The progenitor of such a system is a neutron star, helium star binary. The helium star, with a strong stellar wind, is able to spin up its compact companion via accretion. The neutron star's magnetic field is then lowered to observed values of about 10^{10} Gauss. As the pulsar lifetime is inversely proportional to its magnetic field, the possibility of observing such a system is, thus, enhanced by this type of evolution. We will show that a nascent (Crab-like) pulsar in such a system can, through accretion-braking torques (i.e. the "propeller effect") and wind-induced spin-up rates, reach equilibrium periods that are close to observed values. Such processes occur within the relatively short helium star lifetimes. Additionally, we find that the final outcome of such evolutionary scenarios depends strongly on initial parameters, particularly the initial binary separation a...

  15. Structure Map for Embedded Binary Alloy Nanocrystals

    Energy Technology Data Exchange (ETDEWEB)

    Yuan, C.W.; Shin, S.J.; Liao, C.Y.; Guzman, J.; Stone, P.R.; Watanabe, M.; Ager III, J.W.; Haller, E.E.; Chrzan, D.C.

    2008-09-20

    The equilibrium structure of embedded nanocrystals formed from strongly segregating binary-alloys is considered within a simple thermodynamic model. The model identifies two dimensionlessinterface energies that dictate the structure, and allows prediction of the stable structure for anychoice of these parameters. The resulting structure map includes three distinct nanocrystal mor-phologies: core/shell, lobe/lobe, and completely separated spheres.

  16. The Orbital Decay of Embedded Binary Stars

    CERN Document Server

    Stahler, Steven W

    2009-01-01

    Young binaries within dense molecular clouds are subject to dynamical friction from ambient gas. Consequently, their orbits decay, with both the separation and period decreasing in time. A simple analytic expression is derived for this braking torque. The derivation utilizes the fact that each binary acts as a quadrupolar source of acoustic waves. The acoustic disturbance has the morphology of a two-armed spiral and carries off angular momentum. From the expression for the braking torque, the binary orbital evolution is also determined analytically. This type of merger may help explain the origin of high-mass stars. If infrared dark clouds, with peak densities up to 10^7 cm^{-3}, contain low-mass binaries, those with separations less than 100 AU merge within about 10^5 yr. During the last few thousand years of the process, the rate of mechanical energy deposition in the gas exceeds the stars' radiative luminosity. Successive mergers may lead to the massive star formation believed to occur in these clouds.

  17. Numerical simulations of compact object binaries

    OpenAIRE

    Pfeiffer, Harald P.

    2012-01-01

    Coalescing compact object binaries consisting of black holes and/or Neutron stars are a prime target for ground-based gravitational wave detectors. This article reviews the status of numerical simulations of these systems, with an emphasis on recent progress.

  18. Performance of binary FSK data transmission systems

    Science.gov (United States)

    Batson, B. H.

    1973-01-01

    Matched-filter detection of binary signals is discussed in terms of the probability of bit error. The equations for the probability of error are derived for coherent phase shift keying, and coherent frequency shift keying (FSK). Suboptimum detection of FSK signals is also discussed for discriminators.

  19. Constraining Binary Stellar Evolution With Pulsar Timing

    Science.gov (United States)

    Ferdman, Robert D.; Stairs, I. H.; Backer, D. C.; Burgay, M.; Camilo, F.; D'Amico, N.; Demorest, P.; Faulkner, A.; Hobbs, G.; Kramer, M.; Lorimer, D. R.; Lyne, A. G.; Manchester, R.; McLaughlin, M.; Nice, D. J.; Possenti, A.

    2006-06-01

    The Parkes Multibeam Pulsar Survey has yielded a significant number of very interesting binary and millisecond pulsars. Two of these objects are part of an ongoing timing study at the Green Bank Telescope (GBT). PSR J1756-2251 is a double-neutron star (DNS) binary system. It is similar to the original Hulse-Taylor binary pulsar system PSR B1913+16 in its orbital properties, thus providing another important opportunity to test the validity of General Relativity, as well as the evolutionary history of DNS systems through mass measurements. PSR J1802-2124 is part of the relatively new and unstudied "intermediate-mass" class of binary system, which typically have spin periods in the tens of milliseconds, and/or relatively massive (> 0.7 solar masses) white dwarf companions. With our GBT observations, we have detected the Shapiro delay in this system, allowing us to constrain the individual masses of the neutron star and white dwarf companion, and thus the mass-transfer history, in this unusual system.

  20. Binary Quadratic Forms: A Historical View

    Science.gov (United States)

    Khosravani, Azar N.; Beintema, Mark B.

    2006-01-01

    We present an expository account of the development of the theory of binary quadratic forms. Beginning with the formulation and proof of the Two-Square Theorem, we show how the study of forms of the type x[squared] + ny[squared] led to the discovery of the Quadratic Reciprocity Law, and how this theorem, along with the concept of reduction relates…

  1. Spin frequency distributions of binary millisecond pulsars

    NARCIS (Netherlands)

    A. Papitto; D.F. Torres; N. Rea; T.M. Tauris

    2014-01-01

    Rotation-powered millisecond radio pulsars have been spun up to their present spin period by a 108−109 yr long X-ray-bright phase of accretion of matter and angular momentum in a low-to-intermediate mass binary system. Recently, the discovery of transitional pulsars that alternate cyclically between

  2. The Binary Pulsar: Gravity Waves Exist.

    Science.gov (United States)

    Will, Clifford

    1987-01-01

    Reviews the history of pulsars generally and the 1974 discovery of the binary pulsar by Joe Taylor and Russell Hulse specifically. Details the data collection and analysis used by Taylor and Hulse. Uses this discussion as support for Albert Einstein's theory of gravitational waves. (CW)

  3. Spectropolarimetry of single and binary stars

    CERN Document Server

    Harries, T J

    2004-01-01

    Spectropolarimetry is a photon-hungry technique that will reach fruition in the 8-m telescope age. Here I summarize some of the stellar spectropolarimetric research that my collaborators and I have undertaken, with particular emphasis on the circumstellar environment of massive stars, symbiotic binaries, and star formation.

  4. Testing the Binary Trigger Hypothesis in FUors

    Science.gov (United States)

    Green, Joel D.; Kraus, Adam L.; Rizzuto, Aaron C.; Ireland, Michael J.; Dupuy, Trent J.; Mann, Andrew W.; Kuruwita, Rajika

    2016-10-01

    We present observations of three FU Orionis objects (hereafter, FUors) with nonredundant aperture-mask interferometry at 1.59 μm and 2.12 μm that probe for binary companions on the scale of the protoplanetary disk that feeds their accretion outbursts. We do not identify any companions to V1515 Cyg or HBC 722, but we do resolve a close binary companion to V1057 Cyg that is at the diffraction limit (ρ =58.3+/- 1.4 mas or 30 ± 5 au) and currently much fainter than the outbursting star ({{Δ }}K\\prime =3.34+/- 0.10 mag). Given the flux excess of the outbursting star, we estimate that the mass of the companion (M∼ 0.25{M}ȯ ) is similar to or slightly below that of the FUor itself, and therefore it resembles a typical T Tauri binary system. Our observations only achieve contrast limits of {{Δ }}K\\prime ∼ 4 mag, and hence we are only sensitive to companions that were near or above the pre-outburst luminosity of the FUors. It remains plausible that FUor outbursts could be tied to the presence of a close binary companion. However, we argue from the system geometry and mass reservoir considerations that these outbursts are not directly tied to the orbital period (i.e., occurring at periastron passage), but instead must only occur infrequently.

  5. Flip-flopping binary black holes.

    Science.gov (United States)

    Lousto, Carlos O; Healy, James

    2015-04-10

    We study binary spinning black holes to display the long term individual spin dynamics. We perform a full numerical simulation starting at an initial proper separation of d≈25M between equal mass holes and evolve them down to merger for nearly 48 orbits, 3 precession cycles, and half of a flip-flop cycle. The simulation lasts for t=20 000M and displays a total change in the orientation of the spin of one of the black holes from an initial alignment with the orbital angular momentum to a complete antialignment after half of a flip-flop cycle. We compare this evolution with an integration of the 3.5 post-Newtonian equations of motion and spin evolution to show that this process continuously flip flops the spin during the lifetime of the binary until merger. We also provide lower order analytic expressions for the maximum flip-flop angle and frequency. We discuss the effects this dynamics may have on spin growth in accreting binaries and on the observational consequences for galactic and supermassive binary black holes. PMID:25910104

  6. ANGULAR-MOMENTUM IN BINARY SPIRAL GALAXIES

    NARCIS (Netherlands)

    OOSTERLOO, T

    1993-01-01

    In order to investigate the relative orientations of spiral galaxies in pairs, the distribution of the angle between the spin-vectors for a new sample of 40 binary spiral galaxies is determined. From this distribution it is found, contrary to an earlier result obtained by Helou (1984), that there is

  7. Eclipsing Binaries with the Kepler Mission

    Science.gov (United States)

    Prsa, Andrej; Kepler Eclipsing Binary Working Group

    2012-05-01

    Kepler has revolutionized the eclipsing binary field by providing us essentially uninterrupted data of unprecedented quality. Out of 160,000 targets, we detected over 2500 eclipsing binaries. These range in orbital periods from as short as 0.3 days, all the way to several years, and encompass stellar types across the H-R diagram. In this talk I will present the collaborative effort of the Kepler Eclipsing Binary Working Group to study and characterize these systems on a statistical level: their distribution in periods, galactic latitude, spectral type, fundamental stellar properties and multiplicity as evidenced by eclipse timing variations. I will further show the gems that have sprung from this sample, which were modeled and interpreted to reveal intrinsically pulsating components, runaway encounters with massive tertiaries, stellar objects that populate the lowest end of the main sequence and circumbinary planets. I will critically review and discuss the causes of data systematics and detrending, and introduce a novel algorithm to classify light curves into morphological types using Locally Linear Embedding. Finally, I will touch on the dark side of eclipsing binaries as the primary cause of false positives in extrasolar planet detections with Kepler.

  8. Locating Restricted Facilities on Binary Maps

    CERN Document Server

    Andreica, Mugurel Ionut; Andreica, Madalina Ecaterina

    2008-01-01

    In this paper we consider several facility location problems with applications to cost and social welfare optimization, when the area map is encoded as a binary (0,1) mxn matrix. We present algorithmic solutions for all the problems. Some cases are too particular to be used in practical situations, but they are at least a starting point for more generic solutions.

  9. Bloch-Zener oscillations in binary superlattices.

    Science.gov (United States)

    Dreisow, F; Szameit, A; Heinrich, M; Pertsch, T; Nolte, S; Tünnermann, A; Longhi, S

    2009-02-20

    Bloch-Zener oscillations, i.e., the coherent superposition of Bloch oscillations and Zener tunneling between minibands of a binary lattice, are experimentally demonstrated for light waves in curved femtosecond laser-written waveguide arrays. Visualization of double-periodicity breathing and oscillation modes is reported, and synchronous tunneling leading to wave reconstruction is demonstrated.

  10. A Binary Teetering on the Edge

    Science.gov (United States)

    Motl, P. M.; D'Souza, M. C. R.; Tohline, J. E.; Frank, J.

    2005-05-01

    We present a fully three-dimensional hydrodynamical simulation of Roche lobe overflow in a binary near the stability boundary. This boundary separates evolutionary branches that correspond to either an accelerating mass transfer rate leading eventually to merger through tidal instability or to a decaying mass transfer rate as the orbit expands. The binary begins with a mass ratio of 0.4 (ratio of donor to accretor mass) and is initially assumed to be rotating synchronously. We treat the stellar components as simple polytropic fluids characterized by a polytropic index, n = 3/2. As the donor overflows its Roche lobe, the mass transfer rate initially accelerates before stabilizing and eventually dropping over a timescale of tens of orbits. We also note that for this particular binary, the accretion stream impacts on the surface of the donor rather than forming an accretion disk. This simulation allows us to measure the efficiency with which the accretion stream spins up the accretor in this "direct impact" scenario and the degree to which angular momentum is transfered back to the binary orbit via the tidal field.

  11. Face Alignment via Regressing Local Binary Features.

    Science.gov (United States)

    Ren, Shaoqing; Cao, Xudong; Wei, Yichen; Sun, Jian

    2016-03-01

    This paper presents a highly efficient and accurate regression approach for face alignment. Our approach has two novel components: 1) a set of local binary features and 2) a locality principle for learning those features. The locality principle guides us to learn a set of highly discriminative local binary features for each facial landmark independently. The obtained local binary features are used to jointly learn a linear regression for the final output. This approach achieves the state-of-the-art results when tested on the most challenging benchmarks to date. Furthermore, because extracting and regressing local binary features are computationally very cheap, our system is much faster than previous methods. It achieves over 3000 frames per second (FPS) on a desktop or 300 FPS on a mobile phone for locating a few dozens of landmarks. We also study a key issue that is important but has received little attention in the previous research, which is the face detector used to initialize alignment. We investigate several face detectors and perform quantitative evaluation on how they affect alignment accuracy. We find that an alignment friendly detector can further greatly boost the accuracy of our alignment method, reducing the error up to 16% relatively. To facilitate practical usage of face detection/alignment methods, we also propose a convenient metric to measure how good a detector is for alignment initialization.

  12. PARTICLE SEGREGATION IN FLUIDIZED BINARY-MIXTURES

    NARCIS (Netherlands)

    HOFFMANN, AC; JANSSEN, LPBM

    1993-01-01

    The particle segregation in fluidised beds consisting of different types of binary mixtures is shown to be governed by the same particle transport processes. The segregation behaviour of both ''different-density mixtures'' and ''equal-density mixtures'', two types of system which until now largely h

  13. Testing the Binary Trigger Hypothesis in FUors

    CERN Document Server

    Green, Joel D; Rizzuto, Aaron C; Ireland, Michael J; Dupuy, Trent J; Mann, Andrew W; Kuruwita, Rajika

    2016-01-01

    We present observations of three FU Orionis objects (hereafter, FUors) with nonredundant aperture-mask interferometry (NRM) at 1.59 um and 2.12 um that probe for binary companions on the scale of the protoplanetary disk that feeds their accretion outbursts. We do not identify any companions to V1515 Cyg or HBC 722, but we do resolve a close binary companion to V1057 Cyg that is at the diffraction limit (rho = 58.3 +/- 1.4 mas or 30 +/- 5 AU) and currently much fainter than the outbursting star (delta(K') = 3.34 +/- 0.10 mag). Given the flux excess of the outbursting star, we estimate that the mass of the companion (M ~ 0.25 Msun) is similar to or slightly below that of the FUor itself, and therefore it resembles a typical T Tauri binary system. Our observations only achieve contrast limits of delta(K') ~ 4 mag, and hence we are only sensitive to companions that were near or above the pre-outburst luminosity of the FUors. It remains plausible that FUor outbursts could be tied to the presence of a close binary ...

  14. Binary pulsars as dark-matter probes

    CERN Document Server

    Pani, Paolo

    2015-01-01

    During the motion of a binary pulsar around the galactic center, the pulsar and its companion experience a wind of dark-matter particles that can affect the orbital motion through dynamical friction. We show that this effect produces a characteristic seasonal modulation of the orbit and causes a secular change of the orbital period whose magnitude can be well within the astonishing precision of various binary-pulsar observations. Our analysis is valid for binary systems with orbital period longer than a day. By comparing this effect with pulsar-timing measurements, it is possible to derive model-independent upper bounds on the dark-matter density at different distances $D$ from the galactic center. For example, the precision timing of J1713+0747 imposes $\\rho_{\\rm DM}\\lesssim 10^5\\,{\\rm GeV/cm}^3$ at $D\\approx7\\,{\\rm kpc}$. The detection of a binary pulsar at $D\\lesssim 10\\,{\\rm pc}$ could provide stringent constraints on dark-matter halo profiles and on growth models of the central black hole. The Square Kil...

  15. Supermassive Black Hole Binaries: The Search Continues

    CERN Document Server

    Bogdanovic, Tamara

    2014-01-01

    Gravitationally bound supermassive black hole binaries (SBHBs) are thought to be a natural product of galactic mergers and growth of the large scale structure in the universe. They however remain observationally elusive, thus raising a question about characteristic observational signatures associated with these systems. In this conference proceeding I discuss current theoretical understanding and latest advances and prospects in observational searches for SBHBs.

  16. Binary translation using peephole translation rules

    Science.gov (United States)

    Bansal, Sorav; Aiken, Alex

    2010-05-04

    An efficient binary translator uses peephole translation rules to directly translate executable code from one instruction set to another. In a preferred embodiment, the translation rules are generated using superoptimization techniques that enable the translator to automatically learn translation rules for translating code from the source to target instruction set architecture.

  17. Echoes in X-ray Binaries

    CERN Document Server

    O'Brien, K; Hynes, R; Chen, W; Haswell, C; Still, M

    2002-01-01

    We present a method of analysing the correlated X-ray and optical/UV variability in X-ray binaries, using the observed time delays between the X-ray driving lightcurves and their reprocessed optical echoes. This allows us to determine the distribution of reprocessing sites within the binary. We model the time-delay transfer functions by simulating the distribution of reprocessing regions, using geometrical and binary parameters. We construct best-fit time-delay transfer functions, showing the regions in the binary responsible for the reprocessing of X-rays. We have applied this model to observations of the Soft X-ray Transient, GRO j1655-40. We find the optical variability lags the X-ray variability with a mean time delay of 19.3$pm{2.2}$ seconds. This means that the outer regions of the accretion disc are the dominant reprocessing site in this system. On fitting the data to a simple geometric model, we derive a best-fit disk half-opening angle of 13.5$^{+2.1}_{-2.8}$ degrees, which is similar to that observe...

  18. Planetary nebula progenitors that swallow binary systems

    CERN Document Server

    Soker, Noam

    2015-01-01

    I propose that some irregular `messy' planetary nebulae owe their morphologies to triple-stellar evolution where tight binary systems are tidally and frictionally destroyed inside the envelope of asymptotic giant branch (AGB) stars. The tight binary system might breakup with one star leaving the system. In an alternative evolution, one of the stars of the brook-up tight binary system falls toward the AGB envelope with low specific angular momentum, and drowns in the envelope. In a different type of destruction process the drag inside the AGB envelope causes the tight binary system to merge. This releases gravitational energy within the AGB envelope, leading to a very asymmetrical envelope ejection, with an irregular and `messy' planetary nebula as a descendant. The evolution of the triple-stellar system before destruction can be in a full common envelope evolution (CEE) or in a grazing envelope evolution (GEE). Both before and after destruction the system might lunch pairs of opposite jets. One pronounced sig...

  19. Cassini states for black-hole binaries

    CERN Document Server

    Correia, Alexandre C M

    2016-01-01

    Cassini states correspond to equilibria of the spin axis of a celestial body when its orbit is perturbed. They were initially described for planetary satellites, but the spin axes of black-hole binaries also present this kind of equilibria. In previous works, Cassini states were reported as spin-orbit resonances, but actually the spin of black-hole binaries is in circulation and there is no resonant motion. Here we provide a general description of the spin dynamics of black-hole binary systems based on a Hamiltonian formalism. In absence of dissipation the problem is integrable and it is easy to identify all possible trajectories for the spin for a given value of the total angular momentum. As the system collapses due to radiation reaction, the Cassini states are shifted to different positions, which modifies the dynamics around them. This is why the final spin distribution may differ from the initial one. Our method provides a simple way of predicting the distribution of the spin of black-hole binaries at th...

  20. HI OBSERVATIONS OF BINARY SPIRAL GALAXIES

    NARCIS (Netherlands)

    OOSTERLOO, T; SHOSTAK, S

    1993-01-01

    Observations in the 21 cm line of neutral hydrogen made with the Arecibo- and the Westerbork radio telescopes are presented of a sample of binary spiral galaxies. Completed with optical information, these observations are used to determine the spatial orientation of the spin-vectors of the galaxies

  1. What's Next? Judging Sequences of Binary Events

    Science.gov (United States)

    Oskarsson, An T.; Van Boven, Leaf; McClelland, Gary H.; Hastie, Reid

    2009-01-01

    The authors review research on judgments of random and nonrandom sequences involving binary events with a focus on studies documenting gambler's fallacy and hot hand beliefs. The domains of judgment include random devices, births, lotteries, sports performances, stock prices, and others. After discussing existing theories of sequence judgments,…

  2. Flip-flopping binary black holes.

    Science.gov (United States)

    Lousto, Carlos O; Healy, James

    2015-04-10

    We study binary spinning black holes to display the long term individual spin dynamics. We perform a full numerical simulation starting at an initial proper separation of d≈25M between equal mass holes and evolve them down to merger for nearly 48 orbits, 3 precession cycles, and half of a flip-flop cycle. The simulation lasts for t=20 000M and displays a total change in the orientation of the spin of one of the black holes from an initial alignment with the orbital angular momentum to a complete antialignment after half of a flip-flop cycle. We compare this evolution with an integration of the 3.5 post-Newtonian equations of motion and spin evolution to show that this process continuously flip flops the spin during the lifetime of the binary until merger. We also provide lower order analytic expressions for the maximum flip-flop angle and frequency. We discuss the effects this dynamics may have on spin growth in accreting binaries and on the observational consequences for galactic and supermassive binary black holes.

  3. Non-binary or genderqueer genders.

    Science.gov (United States)

    Richards, Christina; Bouman, Walter Pierre; Seal, Leighton; Barker, Meg John; Nieder, Timo O; T'Sjoen, Guy

    2016-01-01

    Some people have a gender which is neither male nor female and may identify as both male and female at one time, as different genders at different times, as no gender at all, or dispute the very idea of only two genders. The umbrella terms for such genders are 'genderqueer' or 'non-binary' genders. Such gender identities outside of the binary of female and male are increasingly being recognized in legal, medical and psychological systems and diagnostic classifications in line with the emerging presence and advocacy of these groups of people. Population-based studies show a small percentage--but a sizable proportion in terms of raw numbers--of people who identify as non-binary. While such genders have been extant historically and globally, they remain marginalized, and as such--while not being disorders or pathological in themselves--people with such genders remain at risk of victimization and of minority or marginalization stress as a result of discrimination. This paper therefore reviews the limited literature on this field and considers ways in which (mental) health professionals may assist the people with genderqueer and non-binary gender identities and/or expressions they may see in their practice. Treatment options and associated risks are discussed. PMID:26753630

  4. Balanced binary trees in the Tamari lattice

    CERN Document Server

    Giraudo, Samuele

    2010-01-01

    We show that the set of balanced binary trees is closed by interval in the Tamari lattice. We establish that the intervals [T0, T1] where T0 and T1 are balanced trees are isomorphic as posets to a hypercube. We introduce tree patterns and synchronous grammars to get a functional equation of the generating series enumerating balanced tree intervals.

  5. Merging Compact Binaries in Hierarchical Triple Systems: Resonant Excitation of Binary Eccentricity

    CERN Document Server

    Liu, Bin; Yuan, Ye-Fei

    2015-01-01

    The merging of compact binaries play an important role in astrophysical context. The gravitational waves takes the angular momentum off the merging binary, which makes the orbit of the inner binary shrink. In this work, we study the secular dynamics of merging binary with a small perturber in hierarchical triple systems. From our numerical calculations, we find that the triple system goes through a resonant state between the apsidal precession rates of two orbits during the orbital decay, and the eccentricity of the inner orbit is excited, as well as the corresponding gravita- tional wave frequency. Our numerical results could be understood under the linear approximation of small orbital eccentricities and coplanar configuration. Especially, the resonant condition and the excited eccentricity can be estimated analytically.

  6. A decoding method of an n length binary BCH code through (n + 1n length binary cyclic code

    Directory of Open Access Journals (Sweden)

    TARIQ SHAH

    2013-09-01

    Full Text Available For a given binary BCH code Cn of length n = 2 s - 1 generated by a polynomial of degree r there is no binary BCH code of length (n + 1n generated by a generalized polynomial of degree 2r. However, it does exist a binary cyclic code C (n+1n of length (n + 1n such that the binary BCH code Cn is embedded in C (n+1n . Accordingly a high code rate is attained through a binary cyclic code C (n+1n for a binary BCH code Cn . Furthermore, an algorithm proposed facilitates in a decoding of a binary BCH code Cn through the decoding of a binary cyclic code C (n+1n , while the codes Cn and C (n+1n have the same minimum hamming distance.

  7. The Tarantula Massive Binary Monitoring: I. Observational campaign and OB-type spectroscopic binaries

    CERN Document Server

    Almeida, L A; Taylor, W; Barbá, R; Bonanos, A; Crowther, P; Damineli, A; de Koter, A; de Mink, S E; Evans, C J; Gieles, M; Grin, N J; Hénault-Brunet, V; Langer, N; Lennon, D; Lockwood, S; Apellániz, J Maíz; Moffat, A F J; Neijssel, C; Norman, C; Ramírez-Agudelo, O H; Richardson, N D; Schootemeijer, A; Shenar, T; Soszyński, I; Tramper, F; Vink, J S

    2016-01-01

    Massive binaries (MBs) play a crucial role in the Universe and knowing the distributions of their orbital parameters (OPs) is important for a wide range of topics, from stellar feedback to binary evolution channels, from the distribution of supernova types to gravitational wave progenitors. Yet, no direct measurements exist outside the Milky Way. The Tarantula Massive Binary Monitoring was designed to help fill this gap by obtaining multi-epoch radial velocity monitoring of 102 MBs in the 30 Dor. In this paper, we analyse 32 FLAMES/GIRAFFE observations of 93 O- and 7 B-type binaries. We performed a Fourier analysis and obtained orbital solutions for 82 systems: 51 single-lined and 31 double-lined spectroscopic binaries. Overall, the OPs and binary fraction are remarkably similar across the 30 Dor region and compared to existing Galactic samples (GSs). This indicates that within these domains environmental effects are of second order in shaping the properties of MBs. A small difference is found in the distribu...

  8. Binary-disk interaction. II. Gap-opening criteria for unequal-mass binaries

    Energy Technology Data Exchange (ETDEWEB)

    Del Valle, Luciano; Escala, Andrés, E-mail: ldelvalleb@gmail.com [Departamento de Astronomía, Universidad de Chile, Casilla 36-D, Santiago (Chile)

    2014-01-01

    We study the interaction of an unequal-mass binary with an isothermal circumbinary disk, motivated by the theoretical and observational evidence that after a major merger of gas-rich galaxies, a massive gaseous disk with a supermassive black hole binary will be formed in the nuclear region. We focus on the gravitational torques that the binary exerts on the disk and how these torques can drive the formation of a gap in the disk. This exchange of angular momentum between the binary and the disk is mainly driven by the gravitational interaction between the binary and a strong nonaxisymmetric density perturbation that is produced in the disk, in response to the presence of the binary. Using smoothed particle hydrodynamics numerical simulations, we test two gap-opening criteria, one that assumes the geometry of the density perturbation is an ellipsoid/thick spiral and another that assumes a flat spiral geometry for the density perturbation. We find that the flat spiral gap-opening criterion successfully predicts which simulations will have a gap in the disk and which will not. We also study the limiting cases predicted by the gap-opening criteria. Since the viscosity in our simulations is considerably smaller than the expected value in the nuclear regions of gas-rich merging galaxies, we conclude that in such environments the formation of a circumbinary gap is unlikely.

  9. Binary Disk interaction II: Gap-Opening criteria for unequal mass binaries

    CERN Document Server

    del Valle, Luciano

    2013-01-01

    We study the interaction between an unequal mass binary with an isothermal circumbinary disk, motivated by the theoretical and observational evidence that after a major merger of gas-rich galaxies, a massive gaseous disk with a SMBH binary will be formed in the nuclear region. We focus on the gravitational torques that the binary exerts onto the disk and how these torques can drive the formation of a gap in the disk. This exchange of angular momentum between the binary and the disk is mainly driven by the gravitational interaction between the binary and a strong non-axisymmetric density perturbation that is produced in the disk, as response to the presence of the binary. Using SPH numerical simulations we tested two gap-opening criterion, one that assumes that the geometry of the density perturbation is an ellipsoid/thick-spirals and another that assumes a geometry of flat-spirals for the density perturbation. We find that the flat-spirals gap opening criterion successfully predicts which simulations will hav...

  10. Binaries migrating in a gaseous disk: Where are the Galactic center binaries?

    CERN Document Server

    Baruteau, C; Lin, D N C

    2010-01-01

    The massive stars in the Galactic center inner arcsecond share analogous properties with the so-called Hot Jupiters. Most of these young stars have highly eccentric orbits, and were probably not formed in-situ. It has been proposed that these stars acquired their current orbits from the tidal disruption of compact massive binaries scattered toward the proximity of the central supermassive black hole. Assuming a binary star formed in a thin gaseous disk beyond 0.1 pc from the central object, we investigate the relevance of disk-satellite interactions to harden the binding energy of the binary, and to drive its inward migration. A massive, equal-mass binary star is found to become more tightly wound as it migrates inwards toward the central black hole. The migration timescale is very similar to that of a single-star satellite of the same mass. The binary's hardening is caused by the formation of spiral tails lagging the stars inside the binary's Hill radius. We show that the hardening timescale is mostly determ...

  11. White-light Flares on Close Binaries Observed with Kepler

    Science.gov (United States)

    Gao, Qing; Xin, Yu; Liu, Ji-Feng; Zhang, Xiao-Bin; Gao, Shuang

    2016-06-01

    Based on Kepler data, we present the results of a search for white light flares on 1049 close binaries. We identify 234 flare binaries, of which 6818 flares are detected. We compare the flare-binary fraction in different binary morphologies (“detachedness”). The result shows that the fractions in over-contact and ellipsoidal binaries are approximately 10%–20% lower than those in detached and semi-detached systems. We calculate the binary flare activity level (AL) of all the flare binaries, and discuss its variations along the orbital period (P orb) and rotation period (P rot, calculated for only detached binaries). We find that the AL increases with decreasing P orb or P rot, up to the critical values at P orb ∼ 3 days or P rot ∼ 1.5 days, and thereafter the AL starts decreasing no matter how fast the stars rotate. We examine the flaring rate as a function of orbital phase in two eclipsing binaries on which a large number of flares are detected. It appears that there is no correlation between flaring rate and orbital phase in these two binaries. In contrast, when we examine the function with 203 flares on 20 non-eclipse ellipsoidal binaries, bimodal distribution of amplitude-weighted flare numbers shows up at orbital phases 0.25 and 0.75. Such variation could be larger than what is expected from the cross section modification.

  12. Ribozyme, Minizyme, Maxizyme%核酶(Ribozyme)与Minizyme、Maxizyme

    Institute of Scientific and Technical Information of China (English)

    郭静; 金由辛

    2000-01-01

    @@1988年,Haseloff与Gerlach构建了锤头状核酶(图1a),它包括由茎-Ⅱ(stem-Ⅱ)连接的两个保守区段以及与特异性底物结合的侧翼序列[1]。核酶的发现为艾滋病、肿瘤等难治疾病的治疗找到了新的有效途径。1992年,McCall[2]首次用短核苷酸链替代茎-Ⅱ,并发现这一变短的核酶仍保持原有的切割活性,为了标志这一核酶与锤头状核酶的不同,作者将其命名为小酶(minizyme)(图1 b)。小酶可以形成带有普通茎-Ⅱ的二聚体[3],包括同二聚体(图1 c)和异二聚体(图1d)[4]。这种二聚体结构的形成,使聚合物同时切割两个不同底物或同一底物的两个不同位点成为可能[5]。这种由小酶聚合形成的二聚体称为大酶(maxizyme)(图1c、d)。

  13. Binary interaction dominates the evolution of massive stars

    CERN Document Server

    Sana, H; de Koter, A; Langer, N; Evans, C J; Gieles, M; Gosset, E; Izzard, R G; Bouquin, J -B Le; Schneider, F R N; 10.1126/science.1223344

    2012-01-01

    The presence of a nearby companion alters the evolution of massive stars in binary systems, leading to phenomena such as stellar mergers, X-ray binaries and gamma-ray bursts. Unambiguous constraints on the fraction of massive stars affected by binary interaction were lacking. We simultaneously measured all relevant binary characteristics in a sample of Galactic massive O stars and quantified the frequency and nature of binary interactions. Over seventy per cent of all massive stars will exchange mass with a companion, leading to a binary merger in one third of the cases. These numbers greatly exceed previous estimates and imply that binary interaction dominates the evolution of massive stars, with implications for populations of massive stars and their supernovae.

  14. Twin Binaries: Studies of Stability, Mass Transfer, and Coalescence

    CERN Document Server

    Lombardi, James C; Dooley, Katherine L; Gearity, Kyle; Kalogera, Vassiliki; Rasio, Frederic A

    2010-01-01

    Motivated by suggestions that binaries with almost equal-mass components ("twins") play an important role in the formation of double neutron stars and may be rather abundant among binaries, we study the stability of synchronized close and contact binaries with identical components in circular orbits. In particular, we investigate the dependency of the innermost stable circular orbit on the core mass, and we study the coalescence of the binary that occurs at smaller separations. For twin binaries composed of convective main-sequence stars, subgiants, or giants with low mass cores (M_c ~0.15M), we find that stable contact configurations exist at all separations down to the Roche limit, when mass shedding through the outer Lagrangian points triggers a coalescence of the envelopes and leaves the cores orbiting in a central tight binary. We discuss the implications of our results to the formation of binary neutron stars.

  15. 1974: the discovery of the first binary pulsar

    CERN Document Server

    Damour, Thibault

    2014-01-01

    The 1974 discovery, by Russell A. Hulse and Joseph H. Taylor, of the first binary pulsar PSR 1913+16, opened up new possibilities for the study of relativistic gravity. PSR 1913+16, as well as several other binary pulsars, provided {\\it direct} observational proofs that gravity propagates at the velocity of light and has a quadrupolar structure. Binary pulsars also provided accurate tests of the strong-field regime of relativistic gravity. General Relativity has passed all the binary pulsar tests with flying colors. The discovery of binary pulsars had also very important consequences for astrophysics: accurate measurement of neutron star masses, improved understanding of the possible evolution scenarios for the co-evolution of binary stars, proof of the existence of binary neutron stars emitting gravitational waves for hundreds of millions of years, before coalescing in catastrophic events probably leading to an important emission of electromagnetic radiation and neutrinos. This article reviews the history of...

  16. Performance analysis and binary working fluid selection of combined flash-binary geothermal cycle

    International Nuclear Information System (INIS)

    Performance of the combined flash-binary geothermal power cycle for geofluid temperatures between 150 and 250 °C is studied. A thermodynamic model is developed, and the suitable binary working fluids for different geofluid temperatures are identified from a list of thirty working fluid candidates, consisting environmental friendly refrigerants and hydrocarbons. The overall system exergy destruction and Vapor Expansion Ratio across the binary cycle turbine are selected as key performance indicators. The results show that for low-temperature heat sources using refrigerants as binary working fluids result in higher overall cycle efficiency and for medium and high-temperature resources, hydrocarbons are more suitable. For combined flash-binary cycle, secondary working fluids; R-152a, Butane and Cis-butane show the best performances at geofluid temperatures 150, 200 and 250 °C respectively. The overall second law efficiency is calculated as high as 0.48, 0.55 and 0.58 for geofluid temperatures equal 150, 200 and 250 °C respectively. The flash separator pressure found to has important effects on cycle operation and performance. Separator pressure dictates the work production share of steam and binary parts of the system. And there is an optimal separator pressure at which overall exergy destruction of the cycle achieves its minimum value. - Highlights: • Performance of the combined flash-binary geothermal cycle is investigated. • Thirty different fluids are screened to find the most suitable ORC working fluid. • Optimum cycle operation conditions presented for geofluids between 150 °C and 250 °C. • Refrigerants are more suitable for the ORC at geothermal sources temperature ≤200 °C. • Hydrocarbons are more suitable for the ORC at geothermal sources temperature >200 °C

  17. Evolution of Close Neutron Star Binaries

    CERN Document Server

    Ogawaguchi, W

    1996-01-01

    We have calculated evolution of neutron star binaries towards the coalescence driven by gravitational radiation. The hydrodynamical effects as well as the general relativistic effects are important in the final phase. All corrections up to post$^{2.5}$-Newtonian order and the tidal effect are included in the orbital motion. The star is approximated by a simple Newtonian stellar model called affine star model. Stellar spins and angular momentum are assumed to be aligned. We have showed how the internal stellar structure affects the stellar deformation, variations of the spins, and the orbital motion of the binary just before the contact. The gravitational wave forms from the last a few revolutions significantly depend on the stellar structure.

  18. A Binary Representation of the Genetic Code

    CERN Document Server

    Nemzer, Louis R

    2016-01-01

    This article introduces a novel binary representation of the canonical genetic code, in which each of the four mRNA nucleotide bases is assigned a unique 2-bit identifier. These designations have a physiological meaning derived from the molecular structures of, and relationships between, the bases. In this scheme, the 64 possible triplet codons are each indexed by a 6-bit label. The order of the bits reflects the hierarchical organization manifested by the DNA replication/repair and tRNA translation systems. Transition and transversion mutations are naturally expressed as basic binary operations, and the severity of the different types is analyzed. Using a principal component analysis, it is shown that physicochemical properties of amino acids related to protein folding also correlate with particular bit positions of their respective labels. Thus, the likelihood for a particular point mutation to be conservative, and therefore less likely to cause a change in protein functionality, can be estimated.

  19. Hamiltonian Hydrodynamics and Irrotational Binary Inspiral

    CERN Document Server

    Markakis, Charalampos M

    2014-01-01

    Gravitational waves from neutron-star and black-hole binaries carry valuable information on their physical properties and probe physics inaccessible to the laboratory. Although development of black-hole gravitational-wave templates in the past decade has been revolutionary, the corresponding work for double neutron-star systems has lagged. Neutron stars can be well-modelled as simple barotropic fluids during the part of binary inspiral most relevant to gravitational wave astronomy, but the crucial geometric and mathematical consequences of this simplification have remained computationally unexploited. In particular, Carter and Lichnerowicz have described barotropic fluid motion via classical variational principles as conformally geodesic. Moreover, Kelvin's circulation theorem implies that initially irrotational flows remain irrotational. Applied to numerical relativity, these concepts lead to novel Hamiltonian or Hamilton-Jacobi schemes for evolving relativistic fluid flows. Hamiltonian methods can conserve ...

  20. Toroidal Horizons in Binary Black Hole Mergers

    CERN Document Server

    Bohn, Andy; Teukolsky, Saul A

    2016-01-01

    We find the first binary black hole event horizon with a toroidal topology. It had been predicted that generically the event horizons of merging black holes should briefly have a toroidal topology, but such a phase has never been seen prior to this work. In all previous binary black hole simulations, in the coordinate slicing used to evolve the black holes, the topology of the event horizon transitions directly from two spheres during the inspiral to a single sphere as the black holes merge. We present a coordinate transformation to a foliation of spacelike hypersurfaces that "cut a hole" through the event horizon surface, resulting in a toroidal event horizon. A torus could potentially provide a mechanism for violating topological censorship. However, these toroidal event horizons satisfy topological censorship by construction, because we can always trivially apply the inverse coordinate transformation to remove the topological feature.

  1. Construction of generalized binary Bent sequences

    Institute of Scientific and Technical Information of China (English)

    KE Pin-hui; CHANG Zu-ling; WEN Qiao-yan

    2006-01-01

    Bent functions in trace forms play an important role in the constructions of generalized binary Bent sequences.Trace representation of some degree two Bent functions are presented in this paper.A sufficient and necessary condition is derived to determine whether the sum of the combinations of Gold functions,tr1n(x2'+1),1≤I≤n-1,over finite fields F2n (n be even) in addition to another term tr1n/2(x2n/2+1) is a Bent function.Similar to the result presented by Khoo et al.,the condition can be verified by polynominal greatest common divisor (GCD) computation.A similar result also holds in the case Fpn (n be even,p be odd prime).Using the constructed Bent functions and Niho type Bent functions given by Dobbertin et al.,many new generalized binary Bent sequences are obtained.

  2. Binary hidden Markov models and varieties

    CERN Document Server

    Critch, Andrew J

    2012-01-01

    The technological applications of hidden Markov models have been extremely diverse and successful, including natural language processing, gesture recognition, gene sequencing, and Kalman filtering of physical measurements. HMMs are highly non-linear statistical models, and just as linear models are amenable to linear algebraic techniques, non-linear models are amenable to commutative algebra and algebraic geometry. This paper examines closely those HMMs in which all the random variables, called nodes, are binary. Its main contributions are (1) minimal defining equations for the 4-node model, comprising 21 quadrics and 29 cubics, which were computed using Gr\\"obner bases in the cumulant coordinates of Sturmfels and Zwiernik, and (2) a birational parametrization for every binary HMM, with an explicit inverse for recovering the hidden parameters in terms of observables. The new model parameters in (2) are hence rationally identifiable in the sense of Sullivant, Garcia-Puente, and Spielvogel, and each model's Zar...

  3. Dynamics and Habitability in Binary Star Systems

    CERN Document Server

    Eggl, Siegfried; Pilat-Lohinger, Elke

    2014-01-01

    Determining planetary habitability is a complex matter, as the interplay between a planet's physical and atmospheric properties with stellar insolation has to be studied in a self consistent manner. Standardized atmospheric models for Earth-like planets exist and are commonly accepted as a reference for estimates of Habitable Zones. In order to define Habitable Zone boundaries, circular orbital configurations around main sequence stars are generally assumed. In gravitationally interacting multibody systems, such as double stars, however, planetary orbits are forcibly becoming non circular with time. Especially in binary star systems even relatively small changes in a planet's orbit can have a large impact on habitability. Hence, we argue that a minimum model for calculating Habitable Zones in binary star systems has to include dynamical interactions.

  4. Binary Fingerprints at Fluctuation-Enhanced Sensing

    CERN Document Server

    Chang, Hung-Chih; King, Maria D; Kwan, Chiman

    2009-01-01

    We developed a simple way to generate binary patterns based on spectral slopes in different frequency ranges at fluctuation-enhanced sensing. Such patterns can be considered as binary "fingerprints" of odors. The method has experimentally been demonstrated with a commercial semiconducting metal oxide (Taguchi) sensor exposed to bacterial odors (Escherichia coli and Anthrax-surrogate Bacillus subtilis) and processing their stochastic signals. With a single Taguchi sensor, the situations of empty chamber, tryptic soy agar (TSA) medium, or TSA with bacteria could be distinguished with 100% reproducibility. The bacterium numbers were in the range of 25 thousands to 1 million. To illustrate the relevance for ultra-low power consumption, we show that this new type of signal processing and pattern recognition task can be implemented by a simple analog circuitry and a few logic gates with total power consumption in the microWatts range.

  5. Complex Binary Number System Algorithms and Circuits

    CERN Document Server

    Jamil, Tariq

    2013-01-01

    This book is a compilation of the entire research work on the topic of Complex Binary Number System (CBNS) carried out by the author as the principal investigator and members of his research groups at various universities during the years 1992-2012. Pursuant to these efforts spanning several years, the realization of CBNS as a viable alternative to represent complex numbers in an 'all-in-one' binary number format has become possible and efforts are underway to build computer hardware based on this unique number system. It is hoped that this work will be of interest to anyone involved in computer arithmetic and digital logic design and kindle renewed enthusiasm among the engineers working in the areas of digital signal and image processing for developing newer and efficient algorithms and techniques incorporating CBNS.

  6. Cosmic ray acceleration by binary neutron stars

    Science.gov (United States)

    Kundt, W.

    Young binary neutron stars, the elder brothers of pulsars, are proposed as the boosters of the ionic component of cosmic rays. Their rotational energy can be converted into beams of cosmic rays if there is enough coupling between the corotating magnetosphere and the impinging plasma, in a manner similar to the sparking of a grindstone. Power-law spectra in energy are obtained from a power-law dependence of the accelerating fields. The upper cutoff energy should not greatly exceed 10 to the 20th eV. The observed ionic cosmic-ray spectrum would result from a superposition of the injection by no more than about one million young binary neutron stars.

  7. Sequential binary decay of highly excited nuclei

    International Nuclear Information System (INIS)

    The decay of highly excited nuclei is described as a sequence of binary processes involving emission of fragments in their ground, excited-bound and unbound states. Primary together with secondary decay products lead to the final mass distributions. Asymmetric mass splittings involving nucleon emission up to symmetric binary ones are treated according to a generalized Weisskopf evaporation formalism. This procedure is implemented in the Monte-Carlo multi-step statistical model code MECO (Multisequential Evaporation COde). We examine the evolution of the calculated final mass distributions in the decay of a light compound nucleus, as the initial excitation energy increases towards the limits of complete dissociation. Comparisons are made with the predictions of the transition-stage theory, as well as a consistent Weisskopf treatment in which the decay process is described by rate equations for the generation of different fragment species. (author)

  8. Superconducting State Parameters of Binary Superconductors

    Directory of Open Access Journals (Sweden)

    Aditya M. Vora

    2012-05-01

    Full Text Available A well known pseudopotential is used to investigate the superconducting state parameters viz. electron-phonon coupling strength , Coulomb pseudopotential *, transition temperature ТС, isotope effect exponent  and effective interaction strength N0V for the AgxZn1 – x and AgxAl1 – x binary superconductors theoretically for the first time. We have incorporated here five different types of the local field correction functions to show the effect of exchange and correlation on the aforesaid properties. Very strong influence of the various exchange and correlation functions is concluded from the present study. The comparison with other such experimental values is encouraging, which confirms the applicability of the model potential in explaining the superconducting state parameters of binary mixture.

  9. BISC: binary subcomplexes in proteins database.

    Science.gov (United States)

    Juettemann, Thomas; Gerloff, Dietlind L

    2011-01-01

    Binary subcomplexes in proteins database (BISC) is a new protein-protein interaction (PPI) database linking up the two communities most active in their characterization: structural biology and functional genomics researchers. The BISC resource offers users (i) a structural perspective and related information about binary subcomplexes (i.e. physical direct interactions between proteins) that are either structurally characterized or modellable entries in the main functional genomics PPI databases BioGRID, IntAct and HPRD; (ii) selected web services to further investigate the validity of postulated PPI by inspection of their hypothetical modelled interfaces. Among other uses we envision that this resource can help identify possible false positive PPI in current database records. BISC is freely available at http://bisc.cse.ucsc.edu. PMID:21081561

  10. General Properties of Near-Contact Binaries

    Science.gov (United States)

    Oh, Kyu-Dong; Kim, Ho-Il; Kang, Young-Woon; Lee, Woo-Baik

    2000-12-01

    The general properties of the NCBs, divided into A and F types according to their spectral types, have been presented. The evolutionary status of the F type near-contact binaries are closer to that of the contact systems, i.e., W UMa type binaries, if it is assumed that the evolution of the NCBs is governed by the thermal relaxation oscillation theory. The mass-radius relation, mass-luminosity relation and H-R diagram of the NCBs provide that the A type NCBs suffer from more active mass transfer than F types. The components of the NCBs are still in main-sequence like W UMa type stars and their two components lines parallel to the ZAMS.

  11. Stellivore extraterrestrials? Binary stars as living systems

    Science.gov (United States)

    Vidal, Clément

    2016-11-01

    We lack signs of extraterrestrial intelligence (ETI) despite decades of observation in the whole electromagnetic spectrum. Could evidence be buried in existing data? To recognize ETI, we first propose criteria discerning life from non-life based on thermodynamics and living systems theory. Then we extrapolate civilizational development to both external and internal growth. Taken together, these two trends lead to an argument that some existing binary stars might actually be ETI. Since these hypothetical beings feed actively on stars, we call them "stellivores". I present an independent thermodynamic argument for their existence, with a metabolic interpretation of interacting binary stars. The jury is still out, but the hypothesis is empirically testable with existing astrophysical data.

  12. Binary Minor Planets V9.0

    Science.gov (United States)

    Johnston, W. R.

    2016-07-01

    The data set lists orbital and physical properties for well-observed or suspected binary/multiple minor planets including the Pluto system, compiled from the published literature as inspired by Richardson and Walsh (2006) and similar reviews (Merline et al., 2003; Noll, 2006; Pravec et al., 2006; Pravec and Harris, 2007; Descamps and Marchis, 2008; Noll et al., 2008; Walsh, 2009). In total 297 companions in 282 systems are included. Data are presented in three tables: one for orbital and physical properties; one for companion designations, discovery information, and reference codes for data values; and one giving full references for each reference code. This data set is complete for binary/multiple components reported through 31 March 2016.

  13. Buffer Overflow Detection on Binary Code

    Institute of Scientific and Technical Information of China (English)

    ZHENG Yan-fei; LI Hui; CHEN Ke-fei

    2006-01-01

    Most solutions for detecting buffer overflow are based on source code. But the requirement for source code is not always practical especially for business software. A new approach was presented to detect statically the potential buffer overflow vulnerabilities in the binary code of software. The binary code was translated into assembly code without the lose of the information of string operation functions. The feature code abstract graph was constructed to generate more accurate constraint statements, and analyze the assembly code using the method of integer range constraint. After getting the elementary report on suspicious code where buffer overflows possibly happen, the control flow sensitive analysis using program dependence graph was done to decrease the rate of false positive. A prototype was implemented which demonstrates the feasibility and efficiency of the new approach.

  14. Eclipsing binary stars modeling and analysis

    CERN Document Server

    Kallrath, Josef

    1999-01-01

    This book focuses on the formulation of mathematical models for the light curves of eclipsing binary stars, and on the algorithms for generating such models Since information gained from binary systems provides much of what we know of the masses, luminosities, and radii of stars, such models are acquiring increasing importance in studies of stellar structure and evolution As in other areas of science, the computer revolution has given many astronomers tools that previously only specialists could use; anyone with access to a set of data can now expect to be able to model it This book will provide astronomers, both amateur and professional, with a guide for - specifying an astrophysical model for a set of observations - selecting an algorithm to determine the parameters of the model - estimating the errors of the parameters It is written for readers with knowledge of basic calculus and linear algebra; appendices cover mathematical details on such matters as optimization, coordinate systems, and specific models ...

  15. Coalescence of Magnetized Binary Neutron Star Systems

    Science.gov (United States)

    Motl, Patrick M.; Anderson, Matthew; Lehner, Luis; Liebling, Steven L.; Neilsen, David; Palenzuela, Carlos; Ponce, Marcelo

    2015-01-01

    We present simulations of the merger of binary neutron star systems calculated with full general relativity and incorporating the global magnetic field structure for the stars evolved with resistive magnetohydrodynamics. Our simulation tools have recently been improved to incorporate the effects of neutrino cooling and have been generalized to allow for tabular equations of state to describe the degenerate matter. Of particular interest are possible electromagnetic counterparts to the gravitational radiation that emerges from these systems. We focus on magnetospheric interactions that ultimately tap into the gravitational potential energy of the binary to power a Poynting flux and deposition of energy through Joule heating and magnetic reconnection. We gratefully acknowledge the support of NASA through the Astrophysics Theory Program grant NNX13AH01G.

  16. Simulation of nuclei morphologies for binary alloy

    Institute of Scientific and Technical Information of China (English)

    2010-01-01

    We study the critical nuclei morphologies of a binary alloy by the string method. The dynamic equation of the string, connecting the metastable phase (liquid) and stable phase (solid), is governed by Helmholtz free energy for the binary alloy system at a given temperature. The stationary string through the critical nucleus (saddle point) is obtained if the relaxation time of the string is su?ciently large. The critical nucleus radius and energy barrier to nucleation of a pure alloy with isotropic interface energy in two and three dimensions are calculated, which are consistent with the classical nucleation theory. The critical nuclei morphologies are sensitive to the anisotropy strength of interface energy and interface thickness of alloy in two and three dimensions. The critical nucleus and energy barrier to nucleation become smaller if the anisotropy strength of the interface energy is increased, which means that it is much easier to form a stable nucleus if the anisotropy of the interface energy is considered.

  17. Processes assessment in binary mixture plant

    Directory of Open Access Journals (Sweden)

    N. Shankar Ganesh, T. Srinivas

    2013-01-01

    Full Text Available Binary fluid system has an efficient system of heat recovery compared to a single fluid system due to a better temperature match between hot and cold fluids. There are many applications with binary fluid system i.e. Kalina power generation, vapor absorption refrigeration, combined power and cooling etc. Due to involvement of three properties (pressure, temperature and concentration in the processes evaluation, the solution is complicated compared to a pure substance. The current work simplifies this complex nature of solution and analyzes the basic processes to understand the processes behavior in power generation as well as cooling plants. Kalina power plant consists of regenerator, heat recovery vapor generator, condenser, mixture, separator, turbine, pump and throttling device. In addition to some of these components, the cooling plant consists of absorber which is similar in operation of condenser. The amount of vapor at the separator decreases with an increase in its pressure and temperature.

  18. Parallel Matrix Factorization for Binary Response

    CERN Document Server

    Khanna, Rajiv; Agarwal, Deepak; Chen, Beechung

    2012-01-01

    Predicting user affinity to items is an important problem in applications like content optimization, computational advertising, and many more. While bilinear random effect models (matrix factorization) provide state-of-the-art performance when minimizing RMSE through a Gaussian response model on explicit ratings data, applying it to imbalanced binary response data presents additional challenges that we carefully study in this paper. Data in many applications usually consist of users' implicit response that are often binary -- clicking an item or not; the goal is to predict click rates, which is often combined with other measures to calculate utilities to rank items at runtime of the recommender systems. Because of the implicit nature, such data are usually much larger than explicit rating data and often have an imbalanced distribution with a small fraction of click events, making accurate click rate prediction difficult. In this paper, we address two problems. First, we show previous techniques to estimate bi...

  19. Kepler Eclipsing Binary Stars. V. Identification of 31 Eclipsing Binaries in the K2 Engineering Data-set

    CERN Document Server

    Conroy, Kyle E; Stassun, Keivan G; Bloemen, Steven; Parvizi, Mahmoud; Quarles, Billy; Boyajian, Tabetha; Barclay, Thomas; Shporer, Avi; Latham, David W; Abdul-Masih, Michael

    2014-01-01

    Over 2500 eclipsing binaries were identified and characterized from the ultra-precise photometric data provided by the Kepler space telescope. Kepler is now beginning its second mission, K2, which is proving to again provide ultra-precise photometry for a large sample of eclipsing binary stars. In the 1951 light curves covering 12 days in the K2 engineering data-set, we have identified and determined the ephemerides for 31 eclipsing binaries that demonstrate the capabilities for eclipsing binary science in the upcoming campaigns in K2. Of those, 20 are new discoveries. We describe both manual and automated approaches to harvesting the complete set of eclipsing binaries in the K2 data, provide identifications and details for the full set of eclipsing binaries present in the engineering data-set, and discuss the prospects for application of eclipsing binary searches in the K2 mission.

  20. Gravity Waves, Chaos, and Spinning Compact Binaries

    OpenAIRE

    Levin, Janna

    1999-01-01

    Spinning compact binaries are shown to be chaotic in the Post-Newtonian expansion of the two body system. Chaos by definition is the extreme sensitivity to initial conditions and a consequent inability to predict the outcome of the evolution. As a result, the spinning pair will have unpredictable gravitational waveforms during coalescence. This poses a challenge to future gravity wave observatories which rely on a match between the data and a theoretical template.

  1. Dynamics of phase separation of binary fluids

    Science.gov (United States)

    Ma, Wen-Jong; Maritan, Amos; Banavar, Jayanth R.; Koplik, Joel

    1992-01-01

    The results of molecular-dynamics studies of surface-tension-dominated spinodal decomposition of initially well-mixed binary fluids in the absence and presence of gravity are presented. The growth exponent for the domain size and the decay exponent of the potential energy of interaction between the two species with time are found to be 0.6 +/- 0.1, inconsistent with scaling arguments based on dimensional analysis.

  2. Automated pupil remapping with binary optics

    Science.gov (United States)

    Neal, Daniel R.; Mansell, Justin

    1999-01-01

    Methods and apparatuses for pupil remapping employing non-standard lenslet shapes in arrays; divergence of lenslet focal spots from on-axis arrangements; use of lenslet arrays to resize two-dimensional inputs to the array; and use of lenslet arrays to map an aperture shape to a different detector shape. Applications include wavefront sensing, astronomical applications, optical interconnects, keylocks, and other binary optics and diffractive optics applications.

  3. Gravitational waves from binary black holes

    Indian Academy of Sciences (India)

    Bala R Iyer

    2011-07-01

    It is almost a century since Einstein predicted the existence of gravitational waves as one of the consequences of his general theory of relativity. A brief historical overview including Chandrasekhar’s contribution to the subject is first presented. The current status of the experimental search for gravitational waves and the attendant theoretical insights into the two-body problem in general relativity arising from computations of gravitational waves from binary black holes are then broadly reviewed.

  4. Modified Sonine approximation for granular binary mixtures

    OpenAIRE

    Garzó, Vicente; Reyes, Francisco Vega; Montanero, José María

    2008-01-01

    We evaluate in this work the hydrodynamic transport coefficients of a granular binary mixture in $d$ dimensions. In order to eliminate the observed disagreement (for strong dissipation) between computer simulations and previously calculated theoretical transport coefficients for a monocomponent gas, we obtain explicit expressions of the seven Navier-Stokes transport coefficients with the use of a new Sonine approach in the Chapman-Enskog theory. Our new approach consists in replacing, where a...

  5. Minimum degree and density of binary sequences

    DEFF Research Database (Denmark)

    Brandt, Stephan; Müttel, J.; Rautenbach, D.;

    2010-01-01

    For d,k∈N with k ≤ 2d, let g(d,k) denote the infimum density of binary sequences (x)∈{0,1} which satisfy the minimum degree condition σ(x+) ≥ k for all i∈Z with xi=1. We reduce the problem of computing g(d,k) to a combinatorial problem related to the generalized k-girth of a graph G which is defi...

  6. Modeling Flows Around Merging Black Hole Binaries

    OpenAIRE

    van Meter, James R.; Wise, John H.; Miller, M. Coleman; Reynolds, Christopher S.; Centrella, Joan M.; Baker, John G.; Boggs, William D.; Kelly, Bernard J.; McWilliams, Sean T.

    2009-01-01

    Coalescing massive black hole binaries are produced by the mergers of galaxies. The final stages of the black hole coalescence produce strong gravitational radiation that can be detected by the space-borne LISA. In cases where the black hole merger takes place in the presence of gas and magnetic fields, various types of electromagnetic signals may also be produced. Modeling such electromagnetic counterparts of the final merger requires evolving the behavior of both gas and fields in the stron...

  7. Binary outcome variables and logistic regression models

    Institute of Scientific and Technical Information of China (English)

    Xinhua LIU

    2011-01-01

    Biomedical researchers often study binary variables that indicate whether or not a specific event,such as remission of depression symptoms,occurs during the study period.The indicator variable Y takes two values,usually coded as one if the event (remission) is present and zero if the event is not present(non-remission).Let p be the probability that the event occurs ( Y =1),then 1-p will be the probability that the event does not occur ( Y =0).

  8. Binary dicots, a core of dicot games

    OpenAIRE

    Renault, Gabriel

    2014-01-01

    We study combinatorial games under mis\\`ere convention. Several sets of games have been considered earlier to better understand the behaviour of mis\\`ere games. We here connect several of these sets. In particular, we prove that comparison modulo binary dicot games is often the same as comparison modulo dicot games, and that equivalence modulo dicot games and modulo impartial games are the same when they are restricted to impartial games.

  9. Binary Schemes of Vapor Bubble Growth

    Science.gov (United States)

    Zudin, Yu. B.

    2015-05-01

    A problem on spherically symmetric growth of a vapor bubble in an infi nite volume of a uniformly superheated liquid is considered. A description of the limiting schemes of bubble growth is presented. A binary inertial-thermal bubble growth scheme characterized by such specifi c features as the "three quarters" growth law and the effect of "pressure blocking" in a vapor phase is considered.

  10. Binary progenitor models of type IIb supernovae

    CERN Document Server

    Claeys, J S W; Pols, O R; Eldridge, J J; Baes, M

    2011-01-01

    Massive stars that lose their hydrogen-rich envelope down to a few tenths of a solar mass explode as extended type IIb supernovae, an intriguing subtype that links the hydrogen-rich type II supernovae with the hydrogen-poor type Ib and Ic. The progenitors may be very massive single stars that lose their envelope due to their stellar wind, but mass stripping due to interaction with a companion star in a binary system is currently considered to be the dominant formation channel. We computed an extensive grid of binary models with the Eggleton binary evolution code. The predicted rate from our standard models, which assume conservative mass transfer, is about 6 times smaller than the current rate indicated by observations. It is larger but still comparable to the rate expected from single stars. To recover the observed rate we must generously allow for uncertainties and low accretion efficiencies in combination with limited angular momentum loss from the system. Motivated by the claims of detection and non-detec...

  11. A radio pulsing white dwarf binary star

    CERN Document Server

    Marsh, T R; Hümmerich, S; Hambsch, F -J; Bernhard, K; Lloyd, C; Breedt, E; Stanway, E R; Steeghs, D T; Parsons, S G; Toloza, O; Schreiber, M R; Jonker, P G; van Roestel, J; Kupfer, T; Pala, A F; Dhillon, V S; Hardy, L K; Littlefair, S P; Aungwerojwit, A; Arjyotha, S; Koester, D; Bochinski, J J; Haswell, C A; Frank, P; Wheatley, P J

    2016-01-01

    White dwarfs are compact stars, similar in size to Earth but ~200,000 times more massive. Isolated white dwarfs emit most of their power from ultraviolet to near-infrared wavelengths, but when in close orbits with less dense stars, white dwarfs can strip material from their companions, and the resulting mass transfer can generate atomic line and X-ray emission, as well as near- and mid-infrared radiation if the white dwarf is magnetic. However, even in binaries, white dwarfs are rarely detected at far-infrared or radio frequencies. Here we report the discovery of a white dwarf / cool star binary that emits from X-ray to radio wavelengths. The star, AR Scorpii (henceforth AR Sco), was classified in the early 1970s as a delta-Scuti star, a common variety of periodic variable star. Our observations reveal instead a 3.56 hr period close binary, pulsing in brightness on a period of 1.97 min. The pulses are so intense that AR Sco's optical flux can increase by a factor of four within 30 s, and they are detectable a...

  12. Spinodal decomposition of chemically reactive binary mixtures

    Science.gov (United States)

    Lamorgese, A.; Mauri, R.

    2016-08-01

    We simulate the influence of a reversible isomerization reaction on the phase segregation process occurring after spinodal decomposition of a deeply quenched regular binary mixture, restricting attention to systems wherein material transport occurs solely by diffusion. Our theoretical approach follows a diffuse-interface model of partially miscible binary mixtures wherein the coupling between reaction and diffusion is addressed within the frame of nonequilibrium thermodynamics, leading to a linear dependence of the reaction rate on the chemical affinity. Ultimately, the rate for an elementary reaction depends on the local part of the chemical potential difference since reaction is an inherently local phenomenon. Based on two-dimensional simulation results, we express the competition between segregation and reaction as a function of the Damköhler number. For a phase-separating mixture with components having different physical properties, a skewed phase diagram leads, at large times, to a system converging to a single-phase equilibrium state, corresponding to the absolute minimum of the Gibbs free energy. This conclusion continues to hold for the critical phase separation of an ideally perfectly symmetric binary mixture, where the choice of final equilibrium state at large times depends on the initial mean concentration being slightly larger or less than the critical concentration.

  13. Outbursts in ultracompact X-ray binaries

    CERN Document Server

    Hameury, J -M

    2016-01-01

    Very faint X-ray binaries appear to be transient in many cases with peak luminosities much fainter than that of usual soft X-ray transients, but their nature still remains elusive. We investigate the possibility that this transient behaviour is due to the same thermal/viscous instability which is responsible for outbursts of bright soft X-ray transients, occurring in ultracompact binaries for adequately low mass-transfer rates. More generally, we investigate the observational consequences of this instability when it occurs in ultracompact binaries. We use our code for modelling the thermal-viscous instability of the accretion disc, assumed here to be hydrogen poor. We also take into account the effects of disc X-ray irradiation, and consider the impact of the mass-transfer rate on the outburst brightness. We find that one can reproduce the observed properties of both the very faint and the brighter short transients (peak luminosity, duration, recurrence times), provided that the viscosity parameter in quiesce...

  14. Spinodal decomposition of chemically reactive binary mixtures.

    Science.gov (United States)

    Lamorgese, A; Mauri, R

    2016-08-01

    We simulate the influence of a reversible isomerization reaction on the phase segregation process occurring after spinodal decomposition of a deeply quenched regular binary mixture, restricting attention to systems wherein material transport occurs solely by diffusion. Our theoretical approach follows a diffuse-interface model of partially miscible binary mixtures wherein the coupling between reaction and diffusion is addressed within the frame of nonequilibrium thermodynamics, leading to a linear dependence of the reaction rate on the chemical affinity. Ultimately, the rate for an elementary reaction depends on the local part of the chemical potential difference since reaction is an inherently local phenomenon. Based on two-dimensional simulation results, we express the competition between segregation and reaction as a function of the Damköhler number. For a phase-separating mixture with components having different physical properties, a skewed phase diagram leads, at large times, to a system converging to a single-phase equilibrium state, corresponding to the absolute minimum of the Gibbs free energy. This conclusion continues to hold for the critical phase separation of an ideally perfectly symmetric binary mixture, where the choice of final equilibrium state at large times depends on the initial mean concentration being slightly larger or less than the critical concentration. PMID:27627358

  15. Modeling selective intergranular oxidation of binary alloys

    Science.gov (United States)

    Xu, Zhijie; Li, Dongsheng; Schreiber, Daniel K.; Rosso, Kevin M.; Bruemmer, Stephen M.

    2015-01-01

    Intergranular attack of alloys under hydrothermal conditions is a complex problem that depends on metal and oxygen transport kinetics via solid-state and channel-like pathways to an advancing oxidation front. Experiments reveal very different rates of intergranular attack and minor element depletion distances ahead of the oxidation front for nickel-based binary alloys depending on the minor element. For example, a significant Cr depletion up to 9 μm ahead of grain boundary crack tips was documented for Ni-5Cr binary alloy, in contrast to relatively moderate Al depletion for Ni-5Al (˜100 s of nm). We present a mathematical kinetics model that adapts Wagner's model for thick film growth to intergranular attack of binary alloys. The transport coefficients of elements O, Ni, Cr, and Al in bulk alloys and along grain boundaries were estimated from the literature. For planar surface oxidation, a critical concentration of the minor element can be determined from the model where the oxide of minor element becomes dominant over the major element. This generic model for simple grain boundary oxidation can predict oxidation penetration velocities and minor element depletion distances ahead of the advancing front that are comparable to experimental data. The significant distance of depletion of Cr in Ni-5Cr in contrast to the localized Al depletion in Ni-5Al can be explained by the model due to the combination of the relatively faster diffusion of Cr along the grain boundary and slower diffusion in bulk grains, relative to Al.

  16. Circumstellar disks around binary stars in Taurus

    Energy Technology Data Exchange (ETDEWEB)

    Akeson, R. L. [NASA Exoplanet Science Institute, IPAC/Caltech, Pasadena, CA 91125 (United States); Jensen, E. L. N. [Swarthmore College, Department of Physics and Astronomy, Swarthmore, PA 19081 (United States)

    2014-03-20

    We have conducted a survey of 17 wide (>100 AU) young binary systems in Taurus with the Atacama Large Millimeter Array (ALMA) at two wavelengths. The observations were designed to measure the masses of circumstellar disks in these systems as an aid to understanding the role of multiplicity in star and planet formation. The ALMA observations had sufficient resolution to localize emission within the binary system. Disk emission was detected around all primaries and 10 secondaries, with disk masses as low as 10{sup –4} M {sub ☉}. We compare the properties of our sample to the population of known disks in Taurus and find that the disks from this binary sample match the scaling between stellar mass and millimeter flux of F{sub mm}∝M{sub ∗}{sup 1.5--2.0} to within the scatter found in previous studies. We also compare the properties of the primaries to those of the secondaries and find that the secondary/primary stellar and disk mass ratios are not correlated; in three systems, the circumsecondary disk is more massive than the circumprimary disk, counter to some theoretical predictions.

  17. Observational Signatures of Binary Supermassive Black Holes

    CERN Document Server

    Roedig, Constanze; Miller, M Coleman

    2014-01-01

    Observations indicate that most massive galaxies contain a supermassive black hole, and theoretical studies suggest that when such galaxies have a major merger, the central black holes will form a binary and eventually coalesce. Here we discuss two spectral signatures of such binaries that may help distinguish them from ordinary AGN. These signatures are expected when the mass ratio between the holes is not extreme and the system is fed by a circumbinary disk. One such signature is a notch in the thermal continuum that has been predicted by other authors; we point out that it should be accompanied by a spectral revival at shorter wavelengths and also discuss its dependence on binary properties such as mass, mass ratio, and separation. In particular, we note that the wavelength $\\lambda_n$ at which the notch occurs depends on these three parameters in such a way as to make the number of systems displaying these notches $\\propto \\lambda_n^{16/3}$; longer wavelength searches are therefore strongly favored. A sec...

  18. On the Component Masses of Visual Binaries

    Directory of Open Access Journals (Sweden)

    Ninkovic, S.

    2010-06-01

    Full Text Available In the Sixth Catalog of Orbits of Visual Binary Stars we found those belonging to the Main Sequence to form a sample containing 432 visual binaries. Their total masses were obtained dynamically, i.e. they were calculated using the orbital elements and the new Hipparcos parallaxes. For the same pairs the total mass was also found astrophysically - by applying the mass-luminosity relation. The apparent magnitudes of the components were found in two different ways: by deriving them from total magnitudes and magnitude differences, and by taking their values directly from a catalogue. The results for these two approaches show no essential discrepancy. The values of total masses obtained dynamically have a large dispersion involving even completely unrealistic values. This is a clear indication that the input data are not sufficiently reliable. Nevertheless, in a large number of cases the agreement between total masses obtained by usin two different ways is quite satisfactory indicating that i for many visual binaries, as a rule not too distant and with high-quality orbital elements, the dynamical total masses can be reliable; ii the mass-luminosity relation yields quite satisfactory estimates for the component masses when they belong to the Main Sequence and iii a correlation between the relative parallax error and orbit grade exists.

  19. A Gray path on binary partitions

    CERN Document Server

    Colthurst, Thomas

    2009-01-01

    A binary partition of a positive integer $n$ is a partition of $n$ in which each part has size a power of two. In this note we first construct a Gray sequence on the set of binary partitions of $n$. This is an ordering of the set of binary partitions of each $n$ (or of all $n$) such that adjacent partitions differ by one of a small set of elementary transformations; here the allowed transformatios are replacing $2^k+2^k$ by $2^{k+1}$ or vice versa (or addition of a new +1). Next we give a purely local condition for finding the successor of any partition in this sequence; the rule is so simple that successive transitions can be performed in constant time. Finally we show how to compute directly the bijection between $k$ and the $k$th term in the sequence. This answers a question posed by Donald Knuth in section 7.2.1 of The Art of Computer Programming.

  20. Brown Dwarf Binaries from Disintegrating Triple Systems

    CERN Document Server

    Reipurth, Bo

    2015-01-01

    We have carried out 200,000 N-body simulations of three identical stellar embryos with masses from a Chabrier IMF and embedded in a molecular core. The bodies are initially non-hierarchical and undergo chaotic motions, while accreting using Bondi-Hoyle accretion. The coupling of dynamics and accretion often leads to one or two dominant bodies controlling the center of the cloud core, while banishing the other(s) to the lower-density outskirts, leading to stunted growth. Eventually each system transforms either to a bound hierarchical configuration or breaks apart into separate single and binary components. The orbital motion is followed for 100 Myr. To illustrate the simulations we introduce the 'triple diagnostic diagram', which plots two dimensionless numbers against each other, representing the binary mass ratio and the mass ratio of the third body to the total system mass. Numerous freefloating BD binaries are formed in these simulations. The separation distribution function is in good correspondence with...

  1. A field guide to the binary stars

    Science.gov (United States)

    Trimble, V.

    1983-05-01

    Details and examples of the six phases of existence for a binary star system are described. The birth and pre-main-sequence contraction is generally obscured from observation by the presence of gas and dust clouds; it comprises 1/1000th of a system's lifetime. The main sequence, i.e., hydrogen burning, takes up to 90 pct of a star's lifetime, and has been detected in stars with masses ranging from 0.07-32 solar masses. In binary systems, the main sequence stars may or may not interact, or one companion may burn out before the other leaves the main sequence. The primary in a binary system expands to fill its Roche lobe before mass transfer begins, then continues on a Kelvin-Helmholtz time scale until the primary is smaller than the secondary, when transfer proceeds on a nuclear time scale. The depletion of hydrogen fuel or He ignition stops the mass transfer, leading to formation of a white dwarf, neutron star, or supernova that sends both the neutron star and the OB secondary off at high speeds. Back transfer can be initiated in a fifth phase and can produce black holes or dwarf novae, or supernovae. Finally, the system terminates when both stars are extinguished and fall into one another, which can also yield supernovae or black holes.

  2. On the binary expansions of algebraic numbers

    Energy Technology Data Exchange (ETDEWEB)

    Bailey, David H.; Borwein, Jonathan M.; Crandall, Richard E.; Pomerance, Carl

    2003-07-01

    Employing concepts from additive number theory, together with results on binary evaluations and partial series, we establish bounds on the density of 1's in the binary expansions of real algebraic numbers. A central result is that if a real y has algebraic degree D > 1, then the number {number_sign}(|y|, N) of 1-bits in the expansion of |y| through bit position N satisfies {number_sign}(|y|, N) > CN{sup 1/D} for a positive number C (depending on y) and sufficiently large N. This in itself establishes the transcendency of a class of reals {summation}{sub n{ge}0} 1/2{sup f(n)} where the integer-valued function f grows sufficiently fast; say, faster than any fixed power of n. By these methods we re-establish the transcendency of the Kempner--Mahler number {summation}{sub n{ge}0}1/2{sup 2{sup n}}, yet we can also handle numbers with a substantially denser occurrence of 1's. Though the number z = {summation}{sub n{ge}0}1/2{sup n{sup 2}} has too high a 1's density for application of our central result, we are able to invoke some rather intricate number-theoretical analysis and extended computations to reveal aspects of the binary structure of z{sup 2}.

  3. Searching for Binary Supermassive Black Holes via Variable Broad Emission Line Shifts: Low Binary Fraction

    CERN Document Server

    Wang, Lile; Ju, Wenhua; Rafikov, Roman R; Ruan, John J; Schneider, Donald P

    2016-01-01

    Supermassive black hole binaries (SMBHs) are expected to result from galaxy mergers, and thus are natural byproducts (and probes) of hierarchical structure formation in the Universe. They are also the primary expected source of low-frequency gravitational wave emission. We search for binary BHs using time-variable velocity shifts in broad Mg II emission lines of quasars with multi-epoch observations. First, we inspect velocity shifts of the binary SMBH candidates identified in Ju et al. (2013), using SDSS spectra with an additional epoch of data that lengthens the typical baseline to ~10 yr. We find variations in the line-of-sight velocity shifts over 10 years that are comparable to the shifts observed over 1-2 years, ruling out the binary model for the bulk of our candidates. We then analyze 1438 objects with 8 yr median time baselines, from which we would expect to see velocity shifts >1000 km/s from sub-pc binaries. We find only one object with an outlying velocity of 448 km/s, indicating, based on our mod...

  4. On the Neutron Star-Black Hole Binaries Produced by Binary-driven Hypernovae

    CERN Document Server

    Fryer, C L; Rueda, J A; Ruffini, R

    2015-01-01

    Binary-driven hypernovae (BdHNe) following the induced gravitational collapse (IGC) paradigm have been introduced to explain the concomitance of energetic long gamma-ray bursts (GRBs) with type Ic supernovae. The progenitor system is a tight binary system composed of a carbon-oxygen (CO) core and a neutron star (NS) companion. The supernova ejecta of the exploding CO core triggers a hypercritical accretion process onto the NS, which in a few seconds reach the NS critical mass, and gravitationally collapses to a black hole (BH) emitting a GRB. These tight binary systems evolve through the supernova explosion very differently than compact binary progenitors studied in population synthesis calculations. First, the hypercritical accretion onto the NS companion alters both the mass and momentum of the binary. Second, because the explosion timescale is on par with the orbital period, the mass ejection can not be assumed to be instantaneous. Finally, the bow shock created as the accreting NS plows through the supern...

  5. Biología reproductiva de la cornuda común Sphyrna lewini Griffith & Smith (Sphyrnidae en el Golfo de California Reproductive Biology of the Scalloped Hammerhead Shark Sphyrna lewini Griffith & Smith (Sphyrnidae in the Gulf of California

    Directory of Open Access Journals (Sweden)

    Ana María Torres-Huerta

    2008-12-01

    Full Text Available Durante el período de 1994 a 1996 se obtuvieron datos de longitud total (LT, peso total, sexo y madurez gonádica de 1 693 individuos de Sphyrna lewini, capturados en ocho campos pesqueros de tiburón en el Golfo de California. En las hembras la longitud total tuvo un intervalo de 41 a 363 cm, mientras que en los machos fue de 43 a 290 cm. La proporción de sexos en embriones, neonatos y juveniles fue de 1:1, no así en adultos donde las proporciones variaron en las localidades de muestreo. Los machos y hembras alcanzaron la talla de primera madurez a los 170 y 207 cm de LT, respectivamente. El período de gestación tiene una duración aproximada de 11 meses y la fecundidad máxima fue de 32 embriones por hembra. El nacimiento de las crías ocurre en junio, con una talla entre 41 y 53 cm de LT. La presencia de neonatos y hembras grávidas durante el verano en la región central y sureste del Golfo de California sugiere que éstas son dos importantes áreas de nacimiento para la cornuda común en el Golfo de California. Mientras que, la costa este del Golfo de California y la Bahía de La Paz funcionan como área de crianza para los juveniles.Reproductive biology of scalloped hammerhead shark Sphyrna lewini, was investigated in eight shark fishing camps in the Gulf of California (Mexico from 1994 to 1996. A total of 1 693 specimens were determined total length (TL, total weight, sex and the gonadal maturity. The total length range was from 41 to 363 cm for females and from 43 to 290 cm for males. The sex proportion of embryos, neonates and juveniles in most of the cases was 1:1; however, this was not the case for adults, where the proportions varied at the sampling sites. Sexual maturity was reached at 170 cm for males and 207 cm TL for females. The gestation period was 11 months and the highest fecundity was 32 embryos. The June births were between 41 and 53 cm TL. The presence of neonates, gravid females, and small juveniles in the east coast

  6. Merging binary black holes formed through chemically homogeneous evolution in short-period stellar binaries

    CERN Document Server

    Mandel, Ilya

    2016-01-01

    We explore a newly proposed channel to create binary black holes of stellar origin. This scenario applies to massive, tight binaries where mixing induced by rotation and tides transports the products of hydrogen burning throughout the stellar envelopes. This slowly enriches the entire star with helium, preventing the build-up of an internal chemical gradient. The stars remain compact as they evolve nearly chemically homogeneously, eventually forming two black holes, which, we estimate, typically merge 4 to 11 Gyr after formation. Like other proposed channels, this evolutionary pathway suffers from significant theoretical uncertainties, but could be constrained in the near future by data from advanced ground-based gravitational-wave detectors. We perform Monte Carlo simulations of the expected merger rate over cosmic time to explore the implications and uncertainties. Our default model for this channel yields a local binary black hole merger rate of about $10$ Gpc$^{-3}$ yr$^{-1}$ at redshift $z=0$, peaking at...

  7. BINARY CEPHEIDS: SEPARATIONS AND MASS RATIOS IN 5 M {sub ☉} BINARIES

    Energy Technology Data Exchange (ETDEWEB)

    Evans, Nancy Remage; Karovska, Margarita; Tingle, Evan [Smithsonian Astrophysical Observatory, MS 4, 60 Garden Street, Cambridge, MA 02138 (United States); Bond, Howard E. [Department of Astronomy and Astrophysics, Pennsylvania State University, University Park, PA 16802 (United States); Schaefer, Gail H. [The CHARA Array, Georgia State University, P.O. Box 3965, Atlanta, GA 30302-3965 (United States); Mason, Brian D., E-mail: nevans@cfa.harvard.edu, E-mail: heb11@psu.edu, E-mail: schaefer@chara-array.org [US Naval Observatory, 3450 Massachusetts Avenue, NW, Washington, DC 20392-5420 (United States)

    2013-10-01

    Deriving the distribution of binary parameters for a particular class of stars over the full range of orbital separations usually requires the combination of results from many different observing techniques (radial velocities, interferometry, astrometry, photometry, direct imaging), each with selection biases. However, Cepheids—cool, evolved stars of ∼5 M {sub ☉}—are a special case because ultraviolet (UV) spectra will immediately reveal any companion star hotter than early type A, regardless of the orbital separation. We have used International Ultraviolet Explorer UV spectra of a complete sample of all 76 Cepheids brighter than V = 8 to create a list of all 18 Cepheids with companions more massive than 2.0 M {sub ☉}. Orbital periods of many of these binaries are available from radial-velocity studies, or can be estimated for longer-period systems from detected velocity variability. In an imaging survey with the Hubble Space Telescope Wide Field Camera 3, we resolved three of the companions (those of η Aql, S Nor, and V659 Cen), allowing us to make estimates of the periods out to the long-period end of the distribution. Combining these separations with orbital data in the literature, we derive an unbiased distribution of binary separations, orbital periods, and mass ratios. The distribution of orbital periods shows that the 5 M {sub ☉} binaries have systematically shorter periods than do 1 M {sub ☉} stars. Our data also suggest that the distribution of mass ratios depends on both binary separation and system multiplicity. The distribution of mass ratios as a function of orbital separation, however, does not depend on whether a system is a binary or a triple.

  8. A precontact binary and a shallow contact binary are in the same field

    Science.gov (United States)

    Liu, Liang; Qian, Shengbang; He, Jiajia; Liao, Wenping; Liu, Nianping

    2016-06-01

    The period changes of two close binaries, V1107 Cas and AX Cas, which are in the same field, were investigated. Their periods both show a long-term decrease. After further analysis, we found that the periods have their respective cyclic oscillations (T3 = 6.74 ± 0.24 yr for V1107 Cas and T3 = 13.8 ± 0.3 yr for AX Cas), which are possibly caused by a third body due to the light-time effect. We also obtained the complete VRcIc light curves for V1107 Cas and analyzed them with the 2010 version of the Wilson-Devinney code. The photometric results reveal that V1107 Cas is a W-type shallow contact (15.2%±1.8%) binary, with a mass-ratio of 1.797 ± 0.006. The period variation and photometric solution suggest that V1107 Cas is a newly formed contact binary system. Moreover, we estimated the fundamental parameters for V1107 Cas. They are: M1 = 0.39 ± 0.01 M⊙, M2 = 0.70 ± 0.03 M⊙, R1 = 0.52 ± 0.10 R⊙, R2 = 0.68 ± 0.12 R⊙, L1 = 0.178 ± 0.108 L⊙, and L2 = 0.196 ± 0.116 L⊙. Then, based on the coplane assumption, we deduced the masses of possible third bodies to be M3 = 0.091 ± 0.019 M⊙ for V1107 Cas and M3 = 0.325 ± 0.029 M⊙ for AX Cas. Finally, we inferred the evolutional stage of AX Cas, and believe that it is a precontact binary. Thus, the precontact binary AX Cas and the shallow contact binary V1107 Cas have adjoining evolutional stages.

  9. Binary pairs of supermassive black holes - Formation in merging galaxies

    International Nuclear Information System (INIS)

    A process in which supermassive binary blackholes are formed in nuclei of supergiant galaxies due to galaxy mergers is examined. There is growing evidence that mergers of galaxies are common and that supermassive black holes in center of galaxies are also common. Consequently, it is expected that binary black holes should arise in connection with galaxy mergers. The merger process in a galaxy modeled after M87 is considered. The capture probability of a companion is derived as a function of its mass. Assuming a correlation between the galaxy mass and the blackholes mass, the expected mass ratio in binary black holes is calculated. The binary black holes formed in this process are long lived, surviving longer than the Hubble time unless they are perturbed by black holes from successive mergers. The properties of these binaries agree with Gaskell's (1988) observational work on quasars and its interpretation in terms of binary black holes. 39 refs

  10. Microlensing Binaries Discovered through High-magnification Channel

    DEFF Research Database (Denmark)

    Shin, I.-G; Gould, A.; Choi, J.-Y;

    2012-01-01

    Microlensing can provide a useful tool to probe binary distributions down to low-mass limits of binary companions. In this paper, we analyze the light curves of eight binary-lensing events detected through the channel of high-magnification events during the seasons from 2007 to 2010. The perturba......Microlensing can provide a useful tool to probe binary distributions down to low-mass limits of binary companions. In this paper, we analyze the light curves of eight binary-lensing events detected through the channel of high-magnification events during the seasons from 2007 to 2010...... of the event OGLE-2008-BLG-510/MOA-2008-BLG-369 is q ~ 0.1, making the companion of the lens a strong brown dwarf candidate....

  11. Milankovitch Cycles of Terrestrial Planets in Binary Star Systems

    CERN Document Server

    Forgan, Duncan H

    2016-01-01

    The habitability of planets in binary star systems depends not only on the radiation environment created by the two stars, but also on the perturbations to planetary orbits and rotation produced by the gravitational field of the binary and neighbouring planets. Habitable planets in binaries may therefore experience significant perturbations in orbit and spin. The direct effects of orbital resonances and secular evolution on the climate of binary planets remain largely unconsidered. We present latitudinal energy balance modelling of exoplanet climates with direct coupling to an N Body integrator and an obliquity evolution model. This allows us to simultaneously investigate the thermal and dynamical evolution of planets orbiting binary stars, and discover gravito-climatic oscillations on dynamical and secular timescales. We investigate the Kepler-47 and Alpha Centauri systems as archetypes of P and S type binary systems respectively. In the first case, Earthlike planets would experience rapid Milankovitch cycle...

  12. Low Frequency Gravitational Waves from White Dwarf MACHO Binaries

    CERN Document Server

    Hiscock, W A; Routzahn, J R; Kulick, B; Hiscock, William A.; Larson, Shane L.; Routzahn, Joshua R.; Kulick, Ben

    2000-01-01

    The possibility that Galactic halo MACHOs are white dwarfs has recently attracted much attention. Using the known properties of white dwarf binaries in the Galactic disk as a model, we estimate the possible contribution of halo white dwarf binaries to the low-frequency (10^{-5} Hz} < f < 10^{-1}Hz) gravitational wave background. Assuming the fraction of white dwarfs in binaries is the same in the halo as in the disk, we find the confusion background from halo white dwarf binaries could be five times stronger than the expected contribution from Galactic disk binaries, dominating the response of the proposed space based interferometer LISA. Low-frequency gravitational wave observations will be the key to discovering the nature of the dark MACHO binary population.

  13. Distinguishing Between Formation Channels for Binary Black Holes with LISA

    CERN Document Server

    Breivik, Katelyn; Larson, Shane L; Kalogera, Vassiliki; Rasio, Frederic A

    2016-01-01

    The recent detections of GW150914 and GW151226 imply an abundance of stellar-mass binary-black-hole mergers in the local universe. While ground-based gravitational-wave detectors are limited to observing the final moments before a binary merges, space-based detectors, such as the Laser Interferometer Space Antenna (LISA), can observe binaries at lower orbital frequencies where such systems may still encode information about their formation histories. In particular, the orbital eccentricity of binary black holes in the LISA frequency band can be used discriminate between binaries formed in isolation in galactic fields, and those formed in dense stellar environments such as globular clusters. In this letter, we explore the differences in orbital eccentricities of binary black hole populations as they evolve through the LISA frequency band. Overall we find that there are three distinct populations of orbital eccentricities discernible by LISA. We show that, depending on gravitational-wave frequency, anywhere fro...

  14. Evolution Of Binary Supermassive Black Holes In Rotating Nuclei

    CERN Document Server

    Rasskazov, Alexander

    2016-01-01

    Interaction of a binary supermassive black hole with stars in a galactic nucleus can result in changes to all the elements of the binary's orbit, including the angles that define its orientation. If the nucleus is rotating, the orientation changes can be large, causing large changes in the binary's orbital eccentricity as well. We present a general treatment of this problem based on the Fokker-Planck equation for f, defined as the probability distribution for the binary's orbital elements. First- and second-order diffusion coefficients are derived for the orbital elements of the binary using numerical scattering experiments, and analytic approximations are presented for some of these coefficients. Solutions of the Fokker-Planck equation are then derived under various assumptions about the initial rotational state of the nucleus and the binary hardening rate. We find that the evolution of the orbital elements can become qualitatively different when we introduce nuclear rotation: 1) the orientation of the binar...

  15. Nonlinear Dynamics, Lorenz Model and Formation of Binary Stars

    OpenAIRE

    Chang, Yi-Fang

    2008-01-01

    Based on the Lorenz model derived from the equations of hydrodynamics of nebula, we discuss the formation of binary stars by the qualitative analysis theory of nonlinear equation. Here the two wings in the Lorenz model form just the binary stars, whose Roche surface is result of evolution under certain condition. The nonlinear interaction plays a crucial role, and is necessary condition of the formation of binary stars and of multiple stars. While the linear equations form only a single star....

  16. On the formation of Be stars through binary interaction

    OpenAIRE

    Shao, Yong; Li, Xiang-Dong

    2014-01-01

    Be stars are rapidly rotating B type stars. The origin of their rapid rotation is not certain, but binary interaction remains to be a possibility. In this work we investigate the formation of Be stars resulting from mass transfer in binaries in the Galaxy. We calculate the binary evolution with both stars evolving simultaneously and consider different possible mass accretion histories for the accretor. From the calculated results we obtain the critical mass ratios $q_{\\rm cr}$ that determine ...

  17. Magnetic Interaction in Ultra-compact Binary Systems

    CERN Document Server

    Wu, Kinwah

    2009-01-01

    This article reviews the current works on ultra-compact double-degenerate binaries in the presence of magnetic interaction, in particular, unipolar induction. The orbital dynamics and evolution of compact white-dwarf pairs are discussed in detail. Models and predictions of electron cyclotron masers from unipolar-inductor compact binaries and unipolar-inductor white-dwarf planetary systems are presented. Einstein-Laub effects in compact binaries are briefly discussed.

  18. Magnetic interaction in ultra-compact binary systems

    Institute of Scientific and Technical Information of China (English)

    Kinwah WU

    2009-01-01

    This article reviews the current works on ultra-compact double-degenerate binaries in the presence of magnetic interaction, in particular, unipolar induction. The orbital dynamics and evolution of compact white-dwarf pairs are discussed in detail. Models and predictions of electron cyclotron masers from unipolar-inductor compact binaries and unipolar-inductor white-dwarf planetary systems are presented. Einstein-Laub effects in compact binaries are briefly discussed.

  19. How I Learned to Stop Worrying and Love Eclipsing Binaries

    OpenAIRE

    Moe, Maxwell

    2015-01-01

    Relatively massive B-type stars with closely orbiting stellar companions can evolve to produce Type Ia supernovae, X-ray binaries, millisecond pulsars, mergers of neutron stars, gamma ray bursts, and sources of gravitational waves. However, the formation mechanism, intrinsic frequency, and evolutionary processes of B-type binaries are poorly understood. As of 2012, the binary statistics of massive stars had not been measured at low metallicities, extreme mass ratios, or intermediate orbital ...

  20. Segregation phases in a vibrated binary granular layer

    OpenAIRE

    Reis, P. M.; Ehrhardt, G.; Mullin, T.

    2003-01-01

    We present the results of an experimental study of patterned segregation in a horizontally shaken shallow layer of a binary mixture of dry particles. As the compacity, $C$, of the mixture was increased, the evolution of three distinct phases was observed. We classify them as binary gas, segregation liquid and segregation crystal phases using macroscopic and microscopic measures. The binary gas to segregation liquid transition is consistent with a continuous phase transition and includes the c...

  1. Automatic classification of eclipsing binaries light curves using neural networks

    CERN Document Server

    Sarro, L M; Giménez, A

    2005-01-01

    In this work we present a system for the automatic classification of the light curves of eclipsing binaries. This system is based on a classification scheme that aims to separate eclipsing binary sistems according to their geometrical configuration in a modified version of the traditional classification scheme. The classification is performed by a Bayesian ensemble of neural networks trained with {\\em Hipparcos} data of seven different categories including eccentric binary systems and two types of pulsating light curve morphologies.

  2. Information Measures: the Curious Case of the Binary Alphabet

    OpenAIRE

    Jiao, Jiantao; Courtade, Thomas; No, Albert; Venkat, Kartik; Weissman, Tsachy

    2014-01-01

    Four problems related to information divergence measures defined on finite alphabets are considered. In three of the cases we consider, we illustrate a contrast which arises between the binary-alphabet and larger-alphabet settings. This is surprising in some instances, since characterizations for the larger-alphabet settings do not generalize their binary-alphabet counterparts. Specifically, we show that $f$-divergences are not the unique decomposable divergences on binary alphabets that sati...

  3. Status and Future of Deep Searches for Compact Binary Mergers

    Science.gov (United States)

    Nitz, Alexander` Harvey; LIGO Scientific Collaboration

    2016-06-01

    Deep offline searches for gravitational waves from binary black hole, binary neutron star, and neutron star- black hole mergers were conducted during the first Advanced LIGO observing run, and recently Advanced LIGO announced the first detection of gravitational waves from a binary black hole merger. We discuss the recent results, the methodology of the high latency searches, along with improvements for the upcoming observing runs.

  4. Asymptotic bound on binary self-orthogonal codes

    Institute of Scientific and Technical Information of China (English)

    DING Yang

    2009-01-01

    We present two constructions for binary self-orthogonal codes. It turns out that our constructions yield a constructive bound on binary self-orthogonal codes. In particular, when the in-formation rate R = 1/2, by our constructive lower bound, the relative minimum distance δ≈ 0.0595 (for GV bound, δ≈0.110). Moreover, we have proved that the binary self-orthogonal codes asymptotically achieve the Gilbert-Varshamov bound.

  5. Asymptotic bound on binary self-orthogonal codes

    Institute of Scientific and Technical Information of China (English)

    2009-01-01

    We present two constructions for binary self-orthogonal codes. It turns out that our constructions yield a constructive bound on binary self-orthogonal codes. In particular, when the in-formation rate R = 1/2, by our constructive lower bound, the relative minimum distance δ≈ 0.0595 (for GV bound, δ≈ 0.110). Moreover, we have proved that the binary self-orthogonal codes asymptotically achieve the Gilbert-Varshamov bound.

  6. ANNEXATION OF TWO KINDS OF SOLUTION IN BINARY METALLIC MELTS

    Institute of Scientific and Technical Information of China (English)

    J.Zhang

    2004-01-01

    After investigation on the thervnodynamic properties of a small number of binary metallic melts,the structural units of which cannot be wholly determined by the corresponding phase diagrams,it was found that they can be determined by the principle of annexation of two kinds of solutions in binary metallic melts.According to the principle of annexation,calculating models of mass action concentrations for several binary metallic melts have been formulated.The calculated results agree well with practice,showing that this principle is a reliable basis for determination of the structural units for some binary metallic melts.

  7. Improving geothermal power plants with a binary cycle

    Science.gov (United States)

    Tomarov, G. V.; Shipkov, A. A.; Sorokina, E. V.

    2015-12-01

    The recent development of binary geothermal technology is analyzed. General trends in the introduction of low-temperature geothermal sources are summarized. The use of single-phase low-temperature geothermal fluids in binary power plants proves possible and expedient. The benefits of power plants with a binary cycle in comparison with traditional systems are shown. The selection of the working fluid is considered, and the influence of the fluid's physicochemical properties on the design of the binary power plant is discussed. The design of binary power plants is based on the chemical composition and energy potential of the geothermal fluids and on the landscape and climatic conditions at the intended location. Experience in developing a prototype 2.5 MW Russian binary power unit at Pauzhetka geothermal power plant (Kamchatka) is outlined. Most binary systems are designed individually for a specific location. Means of improving the technology and equipment at binary geothermal power plants are identified. One option is the development of modular systems based on several binary systems that employ the heat from the working fluid at different temperatures.

  8. White-Light Flares on Close Binaries Observed with Kepler

    CERN Document Server

    Gao, Qing; Liu, Ji-Feng; Zhang, Xiao-Bin; Gao, Shuang

    2016-01-01

    Based on Kepler data, we present the results of a search for white-light flares on 1049 close binaries. We identify 234 flare binaries, on which 6818 flares are detected. We compare the flare-binary fraction in different binary morphologies ("detachedness"). The result shows that the fractions in over-contact and ellipsoidal binaries are approximately 10-20 percent lower than those in detached and semi-detached systems. We calculate the binary flares activity level (AL) of all the flare binaries, and discuss its variations along the orbital period (P_orb) and rotation period (P_rot, calculated for only detached binaries). We find that AL increases with decreasing P_orb or P_rot up to the critical values at P_orb near 3 days or P_rot near 1.5 days, thereafter, the AL starts decreasing no matter how fast the stars rotate. We examine the flaring rate as a function of orbital phase in 2 eclipsing binaries on which a large number of flares are detected. It appears that there is no correlation between flaring rate ...

  9. Intervals of balanced binary trees in the Tamari lattice

    CERN Document Server

    Giraudo, Samuele

    2011-01-01

    We show that the set of balanced binary trees is closed by interval in the Tamari lattice. We establish that the intervals [T, T'] where T and T' are balanced binary trees are isomorphic as posets to a hypercube. We introduce synchronous grammars that allow to generate tree-like structures and obtain fixed-point functional equations to enumerate these. We also introduce imbalance tree patterns and show that they can be used to describe some sets of balanced binary trees that play a particular role in the Tamari lattice. Finally, we investigate other families of binary trees that are also closed by interval in the Tamari lattice.

  10. Observational signatures of binary supermassive black holes

    Energy Technology Data Exchange (ETDEWEB)

    Roedig, Constanze; Krolik, Julian H. [Department of Physics and Astronomy, Johns Hopkins University, Baltimore, MD 21218 (United States); Miller, M. Coleman [Department of Astronomy and Joint Space-Science Institute, University of Maryland, College Park, MD 20742 (United States)

    2014-04-20

    Observations indicate that most massive galaxies contain a supermassive black hole, and theoretical studies suggest that when such galaxies have a major merger, the central black holes will form a binary and eventually coalesce. Here we discuss two spectral signatures of such binaries that may help distinguish them from ordinary active galactic nuclei. These signatures are expected when the mass ratio between the holes is not extreme and the system is fed by a circumbinary disk. One such signature is a notch in the thermal continuum that has been predicted by other authors; we point out that it should be accompanied by a spectral revival at shorter wavelengths and also discuss its dependence on binary properties such as mass, mass ratio, and separation. In particular, we note that the wavelength λ {sub n} at which the notch occurs depends on these three parameters in such a way as to make the number of systems displaying these notches ∝λ{sub n}{sup 16/3}; longer wavelength searches are therefore strongly favored. A second signature, first discussed here, is hard X-ray emission with a Wien-like spectrum at a characteristic temperature ∼100 keV produced by Compton cooling of the shock generated when streams from the circumbinary disk hit the accretion disks around the individual black holes. We investigate the observability of both signatures. The hard X-ray signal may be particularly valuable as it can provide an indicator of black hole merger a few decades in advance of the event.

  11. Electronic band structures of binary skutterudites

    Energy Technology Data Exchange (ETDEWEB)

    Khan, Banaras [Center for Computational Materials Science, University of Malakand, Chakdara (Pakistan); Department of Physics, University of Malakand, Chakdara (Pakistan); Aliabad, H.A. Rahnamaye [Department of Physics, Hakim Sabzevari University, Sabzevar (Iran, Islamic Republic of); Saifullah [Center for Computational Materials Science, University of Malakand, Chakdara (Pakistan); Department of Physics, University of Malakand, Chakdara (Pakistan); Jalali-Asadabadi, S. [Department of Physics, Faculty of Science, University of Isfahan (UI), 81744 Isfahan (Iran, Islamic Republic of); Khan, Imad [Center for Computational Materials Science, University of Malakand, Chakdara (Pakistan); Department of Physics, University of Malakand, Chakdara (Pakistan); Ahmad, Iftikhar, E-mail: ahma5532@gmail.com [Center for Computational Materials Science, University of Malakand, Chakdara (Pakistan); Department of Physics, University of Malakand, Chakdara (Pakistan)

    2015-10-25

    The electronic properties of complex binary skutterudites, MX{sub 3} (M = Co, Rh, Ir; X = P, As, Sb) are explored, using various density functional theory (DFT) based theoretical approaches including Green's Function (GW) as well as regular and non-regular Tran Blaha modified Becke Jhonson (TB-mBJ) methods. The wide range of calculated bandgap values for each compound of this skutterudites family confirm that they are theoretically as challenging as their experimental studies. The computationally expensive GW method, which is generally assume to be efficient in the reproduction of the experimental bandgaps, is also not very successful in the calculation of bandgaps. In this article, the issue of the theoretical bandgaps of these compounds is resolved by reproducing the accurate experimental bandgaps, using the recently developed non-regular TB-mBJ approach, based on DFT. The effectiveness of this technique is due to the fact that a large volume of the binary skutterudite crystal is empty and hence quite large proportion of electrons lie outside of the atomic spheres, where unlike LDA and GGA which are poor in the treatment of these electrons, this technique properly treats these electrons and hence reproduces the clear electronic picture of these compounds. - Highlights: • Theoretical and experimental electronic band structures of binary skutterudites are reviewed. • The literature reveals that none of the existing theoretical results are consistent with the experiments. • GW, regular and non-regular TB-mBJ methods are used to reproduce the correct results. • The GW and regular TB-mBJ results are better than the available results in literature. • However, non-regular TB-mBJ reproduces the correct experimental band structures.

  12. Sulfated binary and trinary oxide solid superacids

    Institute of Scientific and Technical Information of China (English)

    缪长喜; 华伟明; 陈建民; 高滋

    1996-01-01

    A series of sulfated binary and trinary oxide solid superacids were prepared, and their catalytic activities for n-butane isomerization at low temperature were measured. The incorporation of different metal oxides into ZrO2 may produce a positive or negative effect on the acid strength and catalytic activity of the solid superacids. Sulfated oxides of Cr-Zr, Fe-Cr-Zr and Fe-V-Zr are 2 - 3 times more active than the reported sulfated Fe-Mn-Zr oxide. The enhancement in the superacidity and catalytic activity of these new solid superacids has been discussed on account of the results of various characteriation techniques.

  13. On Totally Reducible Binary Forms: I

    Indian Academy of Sciences (India)

    C Hooley

    2001-08-01

    Let () be the number of positive numbers up to a large limit that are expressible in essentially more than one way by a binary form that is a product of > 2 distinct linear factors with integral coefficients. We prove that $$(n) = O\\left(n^{2/l-_l+\\epsilon}\\right),$$ where \\begin{equation*}_l=\\begin{cases}1/l^2, \\quad\\text{if}\\quad l=3,\\\\ (l-2)/l^2(l-1), \\quad\\text{if}\\quad l>3,\\end{cases}\\end{equation*} thus demonstrating in particular that it is exceptional for a number represented by to have essentially more than one representation.

  14. Computer Vision Using Local Binary Patterns

    CERN Document Server

    Pietikainen, Matti; Zhao, Guoying; Ahonen, Timo

    2011-01-01

    The recent emergence of Local Binary Patterns (LBP) has led to significant progress in applying texture methods to various computer vision problems and applications. The focus of this research has broadened from 2D textures to 3D textures and spatiotemporal (dynamic) textures. Also, where texture was once utilized for applications such as remote sensing, industrial inspection and biomedical image analysis, the introduction of LBP-based approaches have provided outstanding results in problems relating to face and activity analysis, with future scope for face and facial expression recognition, b

  15. Interatomic Potentials for Some Binary Oxides

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    Using atomistic computer simulation methods we have derived a new set of interatomic potential parameters for some binary oxides, comprising divalent transition elements (rock-salt structured)and tetrava)ent metals. Computational techniques based on the minimization of the crystal energy with respect to atomic coordinates have been employed. Crystal properties were calculated and compared with the experimental data to check the reliability of our potential models. Intrinsic (Schottky and Frenkel) defect energies were also calculated and compared with previous studies.There is a good agreement between these calculations, which shows that the new potential parameters are reliable and can be used with confidence for future investigations.

  16. Statistical kinetic treatment of relativistic binary collisions.

    Science.gov (United States)

    Peano, F; Marti, M; Silva, L O; Coppa, G

    2009-02-01

    In particle-based algorithms, the effect of binary collisions is commonly described in a statistical way, using Monte Carlo techniques. It is shown that, in the relativistic regime, stringent constraints should be considered on the sampling of particle pairs for collision, which are critical to ensure physically meaningful results, and that nonrelativistic sampling criteria (e.g., uniform random pairing) yield qualitatively wrong results, including equilibrium distributions that differ from the theoretical Jüttner distribution. A general procedure for relativistically consistent algorithms is provided, and verified with three-dimensional Monte Carlo simulations, thus opening the way to the numerical exploration of the statistical properties of collisional relativistic systems. PMID:19391799

  17. Binary Colloidal Alloy Test-5: Phase Separation

    Science.gov (United States)

    Lynch, Matthew; Weitz, David A.; Lu, Peter J.

    2008-01-01

    The Binary Colloidal Alloy Test - 5: Phase Separation (BCAT-5-PhaseSep) experiment will photograph initially randomized colloidal samples onboard the ISS to determine their resulting structure over time. This allows the scientists to capture the kinetics (evolution) of their samples, as well as the final equilibrium state of each sample. BCAT-5-PhaseSep studies collapse (phase separation rates that impact product shelf-life); in microgravity the physics of collapse is not masked by being reduced to a simple top and bottom phase as it is on Earth.

  18. Multiple Human Tracking Using Binary Infrared Sensors

    Directory of Open Access Journals (Sweden)

    Toshiaki Miyazaki

    2015-06-01

    Full Text Available To create a context-aware environment, human locations and movement paths must be considered. In this paper, we propose an algorithm that tracks human movement paths using only binary sensed data obtained by infrared (IR sensors attached to the ceiling of a room. Our algorithm can estimate multiple human movement paths without a priori knowledge of the number of humans in the room. By repeating predictions and estimations of human positions and links from the previous human positions to the estimated ones at each time period, human movement paths can be estimated. Simulation-based evaluation results show that our algorithm can dynamically trace human movement paths.

  19. Iterative Method for Generating Correlated Binary Sequences

    CERN Document Server

    Usatenko, O V; Apostolov, S S; Makarov, N M; Krokhin, A A

    2014-01-01

    We propose a new efficient iterative method for generating random correlated binary sequences with prescribed correlation function. The method is based on consecutive linear modulations of initially uncorrelated sequence into a correlated one. Each step of modulation increases the correlations until the desired level has been reached. Robustness and efficiency for the proposed algorithm are tested by generating sequences with inverse power-law correlations. The substantial increase in the strength of correlation in the iterative method with respect to the single-step filtering generation is shown for all studied correlation functions. Our results can be used for design of disordered superlattices, waveguides, and surfaces with selective transport properties.

  20. 6384 Kervin: A Possible Hungaria Binary Asteroid

    Science.gov (United States)

    Warner, Brian D.; Aznar Macia, Amadeo

    2016-04-01

    Analysis of CCD photometric observations in late 2015 of the Hungaria asteroid 6384 Kervin indicates that it may be a binary asteroid with a primary lightcurve of P1 = 3.6194 ± 0.0001 h, A1 = 0.06 ± 0.01 mag. The secondary lightcurve parameters are P2 = 15.94 ± 0.01 h, A2 = 0.03 ± 0.01 mag. No mutual events (occultations or eclipses) were observed. However, other indicators give an estimated diameter ratio on the order of Ds/Dp ~ 0.3, possibly greater.

  1. Associative memory - An optimum binary neuron representation

    Science.gov (United States)

    Awwal, A. A.; Karim, M. A.; Liu, H. K.

    1989-01-01

    Convergence mechanism of vectors in the Hopfield's neural network is studied in terms of both weights (i.e., inner products) and Hamming distance. It is shown that Hamming distance should not always be used in determining the convergence of vectors. Instead, weights (which in turn depend on the neuron representation) are found to play a more dominant role in the convergence mechanism. Consequently, a new binary neuron representation for associative memory is proposed. With the new neuron representation, the associative memory responds unambiguously to the partial input in retrieving the stored information.

  2. Model for magnetic-nonmagnetic binary alloys

    Energy Technology Data Exchange (ETDEWEB)

    Razafimandimby, H. [Departement de Physique, Universite de Toliara, 601 Toliara (Madagascar); Randrianasoloharisoa, D. [LPMR, Universite d' Antananarivo (Madagascar); Rakotomahevitra, A. [Departement des Sciences Exactes, Universite de Mahajanga, BP 155 (Madagascar); Parlebas, J.C. [IPCMS, UMR 7504 CNRS-Universite Louis Pasteur, 23 rue du Loess, BP 43, 67034 Strasbourg (France)

    2007-10-15

    An extension of a mean-field approximation (MFA) developed within standard basis operators (SBO) is used to study magnetism in magnetic-nonmagnetic binary alloys. The Curie temperature is calculated from the free energy within the framework of the present approach. The calculated results are in fair agreement with the theoretical results of other research groups for the same problem but utilizing other methods. Finally, the case of NiPt alloys is briefly examined as an example test for the comparison with experiment. (copyright 2007 WILEY-VCH Verlag GmbH and Co. KGaA, Weinheim) (orig.)

  3. Is the Coma cluster binary dominated?

    International Nuclear Information System (INIS)

    It is investigated whether the model of an expanding cluster dominated by a massive binary galaxy, first suggested by Valtonen and Byrd (1979), is consistent with optical data on the surface density and velocity dispersion of the Coma cluster. The evolution of this model is simulated for a wide variety of initial conditions. It is found that galaxy counts in the model can be made to agree with observation, but that the observed velocity dispersion profile cannot be reproduced. A number of other arguments suggest that the central galaxies in Coma cannot be as massive as required by the model. This model is not a viable representation of the Coma cluster. 25 refs

  4. The Benchmark Eclipsing Binary V530 Ori

    DEFF Research Database (Denmark)

    Torres, Guillermo; Lacy, Claud H. Sandberg; Pavlovski, Kresimir;

    2015-01-01

    We report accurate measurements of the physical properties (mass, radius, temperature) of components of the G+M eclipsing binary V530 On. The M-type secondary shows a larger radius and a cooler temperature than predicted by standard stellar evolution models, as has been found for many other low-m......-mass stars and ascribed to the effects of magnetic activity and/or spots. We show that models from the Dartmouth series that incorporate magnetic fields are able to match the observations with plausible field strengths of 1-2 kG, consistent with a rough estimate we derive for that star....

  5. UV Emission line shifts of symbiotic binaries

    OpenAIRE

    Friedjung, M.; Mikolajewska, J.; Zajczyk, A.; Eriksson, M.

    2010-01-01

    Relative and absolute emission line shifts have been previously found for symbiotic binaries, but their cause was not clear. This work aims to better understand the emission line shifts. Positions of strong emission lines were measured on archival UV spectra of Z And, AG Dra, RW Hya, SY Mus and AX Per and relative shifts between the lines of different ions compared. Profiles of lines of RW Hya and Z And were also examined. The reality of the relative shift between resonance and intercombinati...

  6. Binary quadratic forms an algorithmic approach

    CERN Document Server

    Buchmann, Johannes

    2007-01-01

    The book deals with algorithmic problems related to binary quadratic forms, such as finding the representations of an integer by a form with integer coefficients, finding the minimum of a form with real coefficients and deciding equivalence of two forms. In order to solve those problems, the book introduces the reader to important areas of number theory such as diophantine equations, reduction theory of quadratic forms, geometry of numbers and algebraic number theory. The book explains applications to cryptography. It requires only basic mathematical knowledge.

  7. Binary Modulation Formats in Optical Access Networks

    Directory of Open Access Journals (Sweden)

    Vladimir Tejkal

    2010-01-01

    Full Text Available In this paper the binary modulation formats and their application in passive optical networks have been discussed. Passive optical networks are characterized by dividing the optical signal between several end users by using passive splitters, which added a significant attenuation to the network. The performance of the selected modulation formats, depending on the transmitter power in order to verify that there is no signal distortion, has been examined in our simulations. A minimal error rate of the system for each modulation format has been also examined. Finding a suitable modulation, which would allow extension of the distance and splitting ration in current passive optical networks, has been the main aim.

  8. Double riches: asteroseismology in eclipsing binaries

    CERN Document Server

    Southworth, John

    2015-01-01

    The study of eclipsing binaries is our primary source of measured properties of normal stars, achieved through analysis of light and radial velocity curves of eclipsing systems. The study of oscillations and pulsations is increasingly vital for determining the properties of single stars, and investigating the physical phenomena active in their interiors. Combining the two methods holds the promise of establishing stringent tests of stellar evolutionary theory, and of calibrating model-dependent asteroseismology with empirically measured stellar properties. I review recent advances and outline future work.

  9. Heats of formation of binary semiconductors

    Energy Technology Data Exchange (ETDEWEB)

    Kumar, V.; Sastry, B.S.R. [Department of Electronics and Instrumentation Indian School of Mines, Dhanbad 826 004 (India)

    2005-03-01

    Heats of formation of tetrahedrally coordinated II-VI and III-V groups of binary semiconductors have been calculated using plasmon energy data. Two simple relations between plasmon energy and heats of formation have been proposed. One is based on spectroscopic model of Phillips and Van Vechten and other is based on the best-fit data of heats of formation. The calculated values of heats of formation from both the equations are compared with the experimental values and the values reported by earlier workers. A fairly good agreement has been obtained between them. (copyright 2005 WILEY-VCH Verlag GmbH and Co. KGaA, Weinheim) (orig.)

  10. NONLINEAR TIDES IN CLOSE BINARY SYSTEMS

    International Nuclear Information System (INIS)

    We study the excitation and damping of tides in close binary systems, accounting for the leading-order nonlinear corrections to linear tidal theory. These nonlinear corrections include two distinct physical effects: three-mode nonlinear interactions, i.e., the redistribution of energy among stellar modes of oscillation, and nonlinear excitation of stellar normal modes by the time-varying gravitational potential of the companion. This paper, the first in a series, presents the formalism for studying nonlinear tides and studies the nonlinear stability of the linear tidal flow. Although the formalism we present is applicable to binaries containing stars, planets, and/or compact objects, we focus on non-rotating solar-type stars with stellar or planetary companions. Our primary results include the following: (1) The linear tidal solution almost universally used in studies of binary evolution is unstable over much of the parameter space in which it is employed. More specifically, resonantly excited internal gravity waves in solar-type stars are nonlinearly unstable to parametric resonance for companion masses M' ∼> 10-100 M⊕ at orbital periods P ≈ 1-10 days. The nearly static 'equilibrium' tidal distortion is, however, stable to parametric resonance except for solar binaries with P ∼3[P/10 days] for a solar-type star) and drives them as a single coherent unit with growth rates that are a factor of ≈N faster than the standard three-wave parametric instability. These are local instabilities viewed through the lens of global analysis; the coherent global growth rate follows local rates in the regions where the shear is strongest. In solar-type stars, the dynamical tide is unstable to this collective version of the parametric instability for even sub-Jupiter companion masses with P ∼< a month. (4) Independent of the parametric instability, the dynamical and equilibrium tides excite a wide range of stellar p-modes and g-modes by nonlinear inhomogeneous forcing

  11. Nonlinear Tides in Close Binary Systems

    Science.gov (United States)

    Weinberg, Nevin N.; Arras, Phil; Quataert, Eliot; Burkart, Josh

    2012-06-01

    We study the excitation and damping of tides in close binary systems, accounting for the leading-order nonlinear corrections to linear tidal theory. These nonlinear corrections include two distinct physical effects: three-mode nonlinear interactions, i.e., the redistribution of energy among stellar modes of oscillation, and nonlinear excitation of stellar normal modes by the time-varying gravitational potential of the companion. This paper, the first in a series, presents the formalism for studying nonlinear tides and studies the nonlinear stability of the linear tidal flow. Although the formalism we present is applicable to binaries containing stars, planets, and/or compact objects, we focus on non-rotating solar-type stars with stellar or planetary companions. Our primary results include the following: (1) The linear tidal solution almost universally used in studies of binary evolution is unstable over much of the parameter space in which it is employed. More specifically, resonantly excited internal gravity waves in solar-type stars are nonlinearly unstable to parametric resonance for companion masses M' >~ 10-100 M ⊕ at orbital periods P ≈ 1-10 days. The nearly static "equilibrium" tidal distortion is, however, stable to parametric resonance except for solar binaries with P companion masses larger than a few Jupiter masses, the dynamical tide causes short length scale waves to grow so rapidly that they must be treated as traveling waves, rather than standing waves. (3) We show that the global three-wave treatment of parametric instability typically used in the astrophysics literature does not yield the fastest-growing daughter modes or instability threshold in many cases. We find a form of parametric instability in which a single parent wave excites a very large number of daughter waves (N ≈ 103[P/10 days] for a solar-type star) and drives them as a single coherent unit with growth rates that are a factor of ≈N faster than the standard three

  12. Randomized Binary Consensus with Faulty Agents

    Directory of Open Access Journals (Sweden)

    Alexander Gogolev

    2014-05-01

    Full Text Available This paper investigates self-organizing binary majority consensus disturbed by faulty nodes with random and persistent failure. We study consensus in ordered and random networks with noise, message loss and delays. Using computer simulations, we show that: (1 explicit randomization by noise, message loss and topology can increase robustness towards faulty nodes; (2 commonly-used faulty nodes with random failure inhibit consensus less than faulty nodes with persistent failure; and (3 in some cases, such randomly failing faulty nodes can even promote agreement.

  13. Formation of Nanoparticles in binary polymer mixtures

    Science.gov (United States)

    Cai, Tong; Lu, Xihua; Hu, Zhibin

    2000-10-01

    Formation of Nanoparticles in binary polymer mixtures Tong CAI, Xihua LU, and Zhibin HU Department of Physics, Denton, TX76203 The nanoparticles of hydrorypropyl cellulose (HPC)-polyacrylic acid (PAA) complex have been studied using light scattering method. The formation of the nanoparticles results from the hydrogen-bonding interaction between HPC and PAA. The particle size and size distribution, characterized by dynamic light scattering, depend on the HPC concentration, PAA concentration and reactive temperature. Because HPC and PAA have been approved for use inside human body by FDA, the nanoparticle obtained in this study could be used as drug carriers for controlled release.

  14. The orbital evolution of binary galaxies

    Science.gov (United States)

    Chan, R.; Junqueira, S.

    2001-02-01

    We present the results of self-consistent numerical simulations performed to study the orbital circularization of binary galaxies. We have generalized a previous model (Junqueira & de Freitas Pacheco 1994) and confirmed partially their results. The orbital evolution of pairs of galaxies is faster when we consider interacting pairs with contacting ``live'' galaxy halos but the circularization time remains larger than the Hubble time. Besides, the time behavior of the orbits has changed in comparison with previous work because of tidal forces and dynamical friction acting on the halos.

  15. Anonymizing Binary Tables is APX-hard

    CERN Document Server

    Bonizzoni, Paola; Dondi, Riccardo

    2007-01-01

    The problem of publishing personal data without giving up privacy is increasingly important. An interesting formalization is the $k$-anonymization, where all rows in a table are clustered in sets of at least $k$ records, and all the entries for which records in the same cluster have different values are suppressed. The problem has been shown to be NP-hard when the records values are over a ternary alphabet and $k=3$. In this paper we show that the problem is not only NP-hard, but also APX-hard, when the records values are over a binary alphabet and $k=3$.

  16. Binary Nucleation of Water and Sodium Chloride

    Energy Technology Data Exchange (ETDEWEB)

    Nemec, Thomas [Institute of Thermomechanics ASCR, Prague, Czech Republic; Marsik, Frantisek [Institute of Thermomechanics ASCR, Prague, Czech Republic; Palmer, Donald [ORNL

    2005-01-01

    Nucleation processes in the binary water-sodium chloride system are investigated in the sense of the classical nucleation theory (CNT). The CNT is modified to be able to handle the electrolytic nature of the system and is employed to investigate the acceleration of the nucleation process due to the presence of sodium chloride in the steam. This phenomenon, frequently observed in the Wilson zone of steam turbines, is called early condensation. Therefore, the nucleation rates of the water-sodium chloride mixture are of key importance in the power cycle industry.

  17. The Gaia Mission, Binary Stars and Exoplanets

    CERN Document Server

    Eyer, Laurent; Holl, Berry; North, Pierre; Zucker, Shay; Evans, Dafydd W; Pourbaix, Dimitri; Hodgkin, Simon T; Thuillot, William; Mowlavi, Nami; Carry, Benoit

    2015-01-01

    On the 19th of December 2013, the Gaia spacecraft was successfully launched by a Soyuz rocket from French Guiana and started its amazing journey to map and characterise one billion celestial objects with its one billion pixel camera. In this presentation, we briefly review the general aims of the mission and describe what has happened since launch, including the Ecliptic Pole scanning mode. We also focus especially on binary stars, starting with some basic observational aspects, and then turning to the remarkable harvest that Gaia is expected to yield for these objects.

  18. Dynamic Binary Modification Tools, Techniques and Applications

    CERN Document Server

    Hazelwood, Kim

    2011-01-01

    Dynamic binary modification tools form a software layer between a running application and the underlying operating system, providing the powerful opportunity to inspect and potentially modify every user-level guest application instruction that executes. Toolkits built upon this technology have enabled computer architects to build powerful simulators and emulators for design-space exploration, compiler writers to analyze and debug the code generated by their compilers, software developers to fully explore the features, bottlenecks, and performance of their software, and even end-users to extend

  19. Binary magnetic structures in HoEr

    DEFF Research Database (Denmark)

    Howard, B.K.; Bohr, J.

    1991-01-01

    The magnetic structure of a single crystal of the rare earth random alloy Ho50% Er50% has been investigated by elastic neutron diffraction measurements in the temperature range 120-10 K. Three distinct magnetic phases are identified below the Neel temperature of 104 K. The high-temperature phase...... observed between 104 K and 47.5 K is a binary magnetic structure where the holmium and erbium moments belong to different modulated c-axis spirals. The intermediate-temperature phase between 47.5 K and 35 K is a simple basal plane spiral. Below 35 K, the measurements suggest a ferrimagnetic structure in...

  20. Retrograde binaries of massive black holes in circum-binary accretion discs

    CERN Document Server

    Amaro-Seoane, Pau; Dotti, Massimo; Colpi, Monica

    2016-01-01

    We explore the hardening of a massive black hole binary embedded in a circum-binary gas disc when the binary and the gas are coplanar and the gas is counter-rotating. The secondary black hole, revolving in the direction opposite to the gas, experiences a drag from gas-dynamical friction and from direct accretion of part of it. Using two-dimensional (2D) hydrodynamical grid simulations we investigate the effect of changing the accretion prescriptions on the dynamics of the secondary black hole which in turn affect the binary hardening and eccentricity evolution. We find that realistic accretion prescriptions lead to results that differ from those inferred assuming accretion of all the gas within the Roche Lobe of the secondary black hole. Different accretion prescriptions result in different disc's surface densities which alter the black hole's dynamics back. Full 3D SPH realizations of a number of representative cases, run over a shorter interval of time, validate the general trends observed in the less compu...

  1. Merging binary black holes formed through chemically homogeneous evolution in short-period stellar binaries

    Science.gov (United States)

    Mandel, Ilya; de Mink, Selma E.

    2016-05-01

    We explore a newly proposed channel to create binary black holes of stellar origin. This scenario applies to massive, tight binaries where mixing induced by rotation and tides transports the products of hydrogen burning throughout the stellar envelopes. This slowly enriches the entire star with helium, preventing the build-up of an internal chemical gradient. The stars remain compact as they evolve nearly chemically homogeneously, eventually forming two black holes, which we estimate typically merge 4-11 Gyr after formation. Like other proposed channels, this evolutionary pathway suffers from significant theoretical uncertainties, but could be constrained in the near future by data from advanced ground-based gravitational-wave detectors. We perform Monte Carlo simulations of the expected merger rate over cosmic time to explore the implications and uncertainties. Our default model for this channel yields a local binary black hole merger rate of about 10 Gpc-3 yr-1 at redshift z = 0, peaking at twice this rate at z = 0.5. This means that this channel is competitive, in terms of expected rates, with the conventional formation scenarios that involve a common-envelope phase during isolated binary evolution or dynamical interaction in a dense cluster. The events from this channel may be distinguished by the preference for nearly equal-mass components and high masses, with typical total masses between 50 and 110 M⊙. Unlike the conventional isolated binary evolution scenario that involves shrinkage of the orbit during a common-envelope phase, short time delays are unlikely for this channel, implying that we do not expect mergers at high redshift.

  2. Multilevel Cross-Dependent Binary Longitudinal Data

    KAUST Repository

    Serban, Nicoleta

    2013-10-16

    We provide insights into new methodology for the analysis of multilevel binary data observed longitudinally, when the repeated longitudinal measurements are correlated. The proposed model is logistic functional regression conditioned on three latent processes describing the within- and between-variability, and describing the cross-dependence of the repeated longitudinal measurements. We estimate the model components without employing mixed-effects modeling but assuming an approximation to the logistic link function. The primary objectives of this article are to highlight the challenges in the estimation of the model components, to compare two approximations to the logistic regression function, linear and exponential, and to discuss their advantages and limitations. The linear approximation is computationally efficient whereas the exponential approximation applies for rare events functional data. Our methods are inspired by and applied to a scientific experiment on spectral backscatter from long range infrared light detection and ranging (LIDAR) data. The models are general and relevant to many new binary functional data sets, with or without dependence between repeated functional measurements.

  3. Can low metallicity binaries avoid merging?

    CERN Document Server

    de Mink, S E; Pols, O R

    2007-01-01

    Rapid mass transfer in a binary system can drive the accreting star out of thermal equilibrium, causing it to expand. This can lead to a contact system, strong mass loss from the system and possibly merging of the two stars. In low metallicity stars the timescale for heat transport is shorter due to the lower opacity. The accreting star can therefore restore thermal equilibrium more quickly and possibly avoid contact. We investigate the effect of accretion onto main sequence stars with radiative envelopes with different metallicities. We find that a low metallicity (Z<0.001), 4 solar mass star can endure a 10 to 30 times higher accretion rate before it reaches a certain radius than a star at solar metallicity. This could imply that up to two times fewer systems come into contact during rapid mass transfer when we compare low metallicity. This factor is uncertain due to the unknown distribution of binary parameters and the dependence of the mass transfer timescale on metallicity. In a forthcoming paper we w...

  4. A Compact Supermassive Binary Black Hole System

    CERN Document Server

    Rodríguez, C; Zavala, R T; Peck, A B; Pollack, L K; Romani, R W

    2006-01-01

    We report on the discovery of a supermassive binary black hole system in the radio galaxy 0402+379, with a projected separation between the two black holes of just 7.3 pc. This is the closest black hole pair yet found by more than two orders of magnitude. These results are based upon recent multi-frequency observations using the Very Long Baseline Array (VLBA) which reveal two compact, variable, flat-spectrum, active nuclei within the elliptical host galaxy of 0402+379. Multi-epoch observations from the VLBA also provide constraints on the total mass and dynamics of the system. Low spectral resolution spectroscopy using the Hobby-Eberly Telescope indicates two velocity systems with a combined mass of the two black holes of ~1.5 x 10^8 solar masses. The two nuclei appear stationary while the jets emanating from the weaker of the two nuclei appear to move out and terminate in bright hot spots. The discovery of this system has implications for the number of close binary black holes that might be sources of gravi...

  5. Binary rf pulse compression experiment at SLAC

    Energy Technology Data Exchange (ETDEWEB)

    Lavine, T.L.; Spalek, G.; Farkas, Z.D.; Menegat, A.; Miller, R.H.; Nantista, C.; Wilson, P.B.

    1990-06-01

    Using rf pulse compression it will be possible to boost the 50- to 100-MW output expected from high-power microwave tubes operating in the 10- to 20-GHz frequency range, to the 300- to 1000-MW level required by the next generation of high-gradient linacs for linear for linear colliders. A high-power X-band three-stage binary rf pulse compressor has been implemented and operated at the Stanford Linear Accelerator Center (SLAC). In each of three successive stages, the rf pulse-length is compressed by half, and the peak power is approximately doubled. The experimental results presented here have been obtained at low-power (1-kW) and high-power (15-MW) input levels in initial testing with a TWT and a klystron. Rf pulses initially 770 nsec long have been compressed to 60 nsec. Peak power gains of 1.8 per stage, and 5.5 for three stages, have been measured. This corresponds to a peak power compression efficiency of about 90% per stage, or about 70% for three stages, consistent with the individual component losses. The principle of operation of a binary pulse compressor (BPC) is described in detail elsewhere. We recently have implemented and operated at SLAC a high-power (high-vacuum) three-stage X-band BPC. First results from the high-power three-stage BPC experiment are reported here.

  6. The binary-rich cluster Abell 2244

    International Nuclear Information System (INIS)

    A structural, luminosity, and velocity study of the cluster Abell 2244 is presented. A2244 was selected for study from the list of Struble and Rood because of its unusually binary-rich population in an evolved cD-type cluster environment, a contradiction in terms of cluster collapse scenarios versus the formation and survival of bound pairs. In comparison with the Coma cluster, A2244 is a slightly poorer version with a suspected deficiency in the number of cluster members in the core. This evidence, combined with the high-velocity dispersion of the cluster, suggests that a low-velocity population of galaxies has been consumed by the central cD galaxy. The central cD galaxy has a single low-velocity companion deep in its envelope and cross sections of its surface-brightness profile suggest that it is in transition from a depressed central surface-brightness object to a high central concentration system, a point of contention in merger models. All but two of the binary galaxies were found to be projections with other cluster members or stars and, thus, are not in conflict with the advanced dynamical age of the cluster. 35 refs

  7. The Electromagnetic Signals of Compact Binary Mergers

    CERN Document Server

    Piran, T; Rosswog, S

    2012-01-01

    Compact binary mergers are prime sources of gravitational waves (GWs), targeted by current and next generation detectors. The question "what is the observable electromagnetic (EM) signature of a compact binary merger?" is an intriguing one with crucial consequences to the quest for gravitational waves. We present a large set of numerical simulations that focus on the electromagnetic signals that emerge from the dynamically ejected sub-relativistic material. These outflows produce on a time scale of a day macronovae - short-lived optical/UV signals powered by radioactive decay. In addition, the outflow interaction with the surrounding matter inevitably leads to a long-lasting radio emission. We calculate the expected radio signals from these outflows on time scales longer than a year, when the sub-relativistic ejecta dominate the emission. We discuss their detectability in 1.4 GHz and 150 MHz and compare it with an updated estimate of the detectability of short GRBs' orphan afterglows. We find that mergers wit...

  8. Tertiary companions to close spectroscopic binaries

    CERN Document Server

    Tokovinin, A; Thomas, S; Udry, S

    2006-01-01

    We have surveyed a sample of 165 solar-type spectroscopic binaries (SB) with periods from 1 to 30 days for higher-order multiplicity. 62 targets have been observed with the NACO adaptive optics system and 13 new physical tertiary companions were detected. Another 12 new wide companions (5 still tentative) were retrieved from the 2MASS sky survey. Our binaries belong to 161 stellar systems; of these 64 are triple, 11 quadruple and 7 quintuple. After correction for incomplete detection, the fraction of SBs with additional companions is 63% +- 5%. We find that this fraction is a strong function of the SB period P, reaching 96% for P12d. Period distributions of SBs with and without tertiaries are significantly different, but their mass ratio distributions are identical. New statistical data on the multiplicity of close SBs indicate that their periods and mass ratios were established very early, but periods of SBs within triples were further shortened by angular momentum exchange with companions.

  9. ACOUSTIC EFFECTS ON BINARY AEROELASTICITY MODEL

    Directory of Open Access Journals (Sweden)

    Kok Hwa Yu

    2011-10-01

    Full Text Available Acoustics is the science concerned with the study of sound. The effects of sound on structures attract overwhelm interests and numerous studies were carried out in this particular area. Many of the preliminary investigations show that acoustic pressure produces significant influences on structures such as thin plate, membrane and also high-impedance medium like water (and other similar fluids. Thus, it is useful to investigate the structure response with the presence of acoustics on aircraft, especially on aircraft wings, tails and control surfaces which are vulnerable to flutter phenomena. The present paper describes the modeling of structural-acoustic interactions to simulate the external acoustic effect on binary flutter model. Here, the binary flutter model which illustrated as a rectangular wing is constructed using strip theory with simplified unsteady aerodynamics involving flap and pitch degree of freedom terms. The external acoustic excitation, on the other hand, is modeled using four-node quadrilateral isoparametric element via finite element approach. Both equations then carefully coupled and solved using eigenvalue solution. The mentioned approach is implemented in MATLAB and the outcome of the simulated result are later described, analyzed and illustrated in this paper.

  10. OJ 287 binary black hole system

    CERN Document Server

    Valtonen, Mauri

    2011-01-01

    The light curve of the quasar OJ 287 extends from 1891 up today without major gaps. Here we summarize the results of the 2005 - 2010 observing campaign. The main results are the following: (1) The 2005 October optical outburst came at the expected time, thus confirming the general relativistic precession in the binary black hole system. This result disproved the model of a single black hole system with accretion disk oscillations, as well as several toy models of binaries without relativistic precession. In the latter models the main outburst would have been a year later. (2) The nature of the radiation of the 2005 October outburst was expected to be bremsstrahlung from hot gas at the temperature of $3\\times 10^{5}$ $^{\\circ}$K. This was confirmed by combined ground based and ultraviolet observations using the XMM-Newton X-ray telescope. (3) A secondary outburst of the same nature was expected at 2007 September 13. Within the accuracy of observations (about 6 hours), it started at the correct time. Thus the p...

  11. Microlensing Binaries with Candidate Brown Dwarf Companions

    DEFF Research Database (Denmark)

    Shin, I.-G; Han, C.; Gould, A.;

    2012-01-01

    Brown dwarfs are important objects because they may provide a missing link between stars and planets, two populations that have dramatically different formation histories. In this paper, we present the candidate binaries with brown dwarf companions that are found by analyzing binary microlensing......-278/OGLE-2011-BLG-012N. Among them, we are able to confirm that the companions of the lenses of MOA-2011-BLG-104/OGLE-2011-BLG-0172 and MOA-2011-BLG-149 are brown dwarfs by determining the mass of the lens based on the simultaneous measurement of the Einstein radius and the lens parallax. The measured...... masses of the brown dwarf companions are 0.02 ± 0.01 M⊙ and 0.019 ± 0.002 M⊙ for MOA-2011-BLG-104/OGLE-2011-BLG-0172 and MOA-2011-BLG-149, respectively, and both companions are orbiting low-mass M dwarf host stars. More microlensing brown dwarfs are expected to be detected as the number of lensing events...

  12. Spectroscopic binaries with components of similar mass

    CERN Document Server

    Lucy, L B

    2006-01-01

    The assertion that there is an intrinsic excess of binaries with mass ratios q \\simeq 1 - the twin hypothesis - is investigated. A strong version of this hypothesis (H_s), due to Lucy & Ricco (1979) and Tokovinin (2000), refers to a narrow peak in the distribution function psi(q) for q \\ga 0.95. A weak version (H_w), due to Halbwachs et al. (2003), refers to a broad peak for q \\ga 0.8. Current data on SB2's is analysed and H_s is found to be statistically significant for a sample restricted to orbits of high precision. But claims that H_s is significant for binaries with special characteristics are not confirmed since the sample sizes are well below the minimum required for a reliable test. With regard to H_w, additional observational evidence is not presented, but evidence to the contrary in the form of Hogeveen's (1992b) model of biased sampling with psi \\propto q^{-2} is criticized. Specifically, his success in thus fitting catalogued data depends on implausible assumptions about the research methodolo...

  13. Thirty New Low-Mass Spectroscopic Binaries

    CERN Document Server

    Shkolnik, Evgenya L; Liu, Michael C; Reid, I Neill; Cameron, Andrew C

    2010-01-01

    As part of our search for young M dwarfs within 25 pc, we acquired high-resolution spectra of 185 low-mass stars compiled by the NStars project that have strong X-ray emission. By cross-correlating these spectra with radial velocity standard stars, we are sensitive to finding multi-lined spectroscopic binaries. We find a low-mass spectroscopic binary fraction of 16% consisting of 27 SB2s, 2 SB3s and 1 SB4, increasing the number of known low-mass SBs by 50% and proving that strong X-ray emission is an extremely efficient way to find M-dwarf SBs. WASP photometry of 23 of these systems revealed two low-mass EBs, bringing the count of known M dwarf EBs to 15. BD -22 5866, the SB4, is fully described in Shkolnik et al. 2008 and CCDM J04404+3127 B consists of a two mid-M stars orbiting each other every 2.048 days. WASP also provided rotation periods for 12 systems, and in the cases where the synchronization time scales are short, we used P_rot to determine the true orbital parameters. For those with no P_rot, we us...

  14. Speakers' choice of frame in binary choice

    Directory of Open Access Journals (Sweden)

    Marc van Buiten

    2009-02-01

    Full Text Available A distinction is proposed between extit{recommending for} preferred choice options and extit{recommending against} non-preferred choice options. In binary choice, both recommendation modes are logically, though not psychologically, equivalent. We report empirical evidence showing that speakers recommending for preferred options predominantly select positive frames, which are less common when speakers recommend against non-preferred options. In addition, option attractiveness is shown to affect speakers' choice of frame, and adoption of recommendation mode. The results are interpreted in terms of three compatibility effects, (i extit{recommendation mode---valence framing compatibility}: speakers' preference for positive framing is enhanced under extit{recommending for} and diminished under extit{recommending against} instructions, (ii extit{option attractiveness---valence framing compatibility}: speakers' preference for positive framing is more pronounced for attractive than for unattractive options, and (iii extit{recommendation mode---option attractiveness compatibility}: speakers are more likely to adopt a extit{recommending for} approach for attractive than for unattractive binary choice pairs.

  15. Modeling and analysis of advanced binary cycles

    Energy Technology Data Exchange (ETDEWEB)

    Gawlik, K.

    1997-12-31

    A computer model (Cycle Analysis Simulation Tool, CAST) and a methodology have been developed to perform value analysis for small, low- to moderate-temperature binary geothermal power plants. The value analysis method allows for incremental changes in the levelized electricity cost (LEC) to be determined between a baseline plant and a modified plant. Thermodynamic cycle analyses and component sizing are carried out in the model followed by economic analysis which provides LEC results. The emphasis of the present work is on evaluating the effect of mixed working fluids instead of pure fluids on the LEC of a geothermal binary plant that uses a simple Organic Rankine Cycle. Four resources were studied spanning the range of 265{degrees}F to 375{degrees}F. A variety of isobutane and propane based mixtures, in addition to pure fluids, were used as working fluids. This study shows that the use of propane mixtures at a 265{degrees}F resource can reduce the LEC by 24% when compared to a base case value that utilizes commercial isobutane as its working fluid. The cost savings drop to 6% for a 375{degrees}F resource, where an isobutane mixture is favored. Supercritical cycles were found to have the lowest cost at all resources.

  16. Ordering in binary transition metal alloys

    Energy Technology Data Exchange (ETDEWEB)

    Rusakov, G. [Institute for Metal Physics UB RAS, 18 Kovalevskoj St., 620990 Ekaterinburg (Russian Federation); Ural State Technical University - UPI, 19 Mira St., 620002 Ekaterinburg (Russian Federation); Son, L., E-mail: ldson@yandex.ru [Ural State Pedagogical University, 26 Cosmonavtov Ave, 620017 Ekaterinburg (Russian Federation); Efimova, E. [Institute for Metal Physics UB RAS, 18 Kovalevskoj St., 620990 Ekaterinburg (Russian Federation); Ural State Technical University - UPI, 19 Mira St., 620002 Ekaterinburg (Russian Federation); Dubinin, N. [Institute for Metallurgy UB RAS, 101 Amundsen St., 620016 Ekaterinburg (Russian Federation); Ural State Technical University - UPI, 19 Mira St., 620002 Ekaterinburg (Russian Federation)

    2012-03-20

    We present the phenomenological thermodynamic modeling of binary alloys which demonstrate solubility of the components at high temperatures, and form intermediate phase near equiatomic composition at lower ones (the so-called sigma-phase). Besides, the regular solution miscibility gap takes place also. The nonequilibrium thermodynamic potential is written out as a sum of the free energy of regular solution and polynomial term of scalar order parameter {phi}, which describes the {sigma}-phase ordering. There are four parameters in the model: the energy of regular solution mixing, the energy of {sigma}-phase formation at zero temperature, and the widths of temperature and concentration intervals of {sigma}-phase existence in the alloy with frozen-in random distribution of components. Up to now, both phase transitions which take place in a number of transition metals binary alloys (the {sigma}-phase formation and miscibility in the regular solution) have been treated separately. In present work, the standard technique of phase diagram calculation allows us to analyze all possible phase diagrams which may arise in the alloy.

  17. Binary droplet collision at high Weber number

    Science.gov (United States)

    Pan, Kuo-Long; Chou, Ping-Chung; Tseng, Yu-Jen

    2009-09-01

    By using the techniques developed for generating high-speed droplets, we have systematically investigated binary droplet collision when the Weber number (We) was increased from the range usually tested in previous studies on the order of 10 to a much larger value of about 5100 for water (a droplet at 23 m/s with a diameter of 0.7 mm). Various liquids were also used to explore the effects of viscosity and surface tension. Specifically, beyond the well-known regimes at moderate We’s, which exhibited coalescence, separation, and separation followed by satellite droplets, we found different behaviors showing a fingering lamella, separation after fingering, breakup of outer fingers, and prompt splattering into multiple secondary droplets as We was increased. The critical Weber numbers that mark the boundaries between these impact regimes are identified. The specific impact behaviors, such as fingering and prompt splattering or splashing, share essential similarity with those also observed in droplet-surface impacts, whereas substantial variations in the transition boundaries may result from the disparity of the boundary conditions at impacts. To compare the outcomes of both types of collisions, a simple model based on energy conservation was carried out to predict the maximum diameter of an expanding liquid disk for a binary droplet collision. The results oppose the dominance of viscous drag, as proposed by previous studies, as the main deceleration force to effect a Rayleigh-Taylor instability and ensuing periphery fingers, which may further lead to the formations of satellite droplets.

  18. Convergence Speed of Binary Interval Consensus

    CERN Document Server

    Draief, Moez

    2012-01-01

    We consider the convergence time for solving the binary consensus problem using the interval consensus algorithm proposed by B\\' en\\' ezit, Thiran and Vetterli (2009). In the binary consensus problem, each node initially holds one of two states and the goal for each node is to correctly decide which one of these two states was initially held by a majority of nodes. We derive an upper bound on the expected convergence time that holds for arbitrary connected graphs, which is based on the location of eigenvalues of some contact rate matrices. We instantiate our bound for particular networks of interest, including complete graphs, paths, cycles, star-shaped networks, and Erd\\" os-R\\' enyi random graphs; for these graphs, we compare our bound with alternative computations. We find that for all these examples our bound is tight, yielding the exact order with respect to the number of nodes. We pinpoint the fact that the expected convergence time critically depends on the voting margin defined as the difference betwe...

  19. A Speeding Binary in the Galactic Halo

    Science.gov (United States)

    Kohler, Susanna

    2016-04-01

    The recent discovery of a hyper-velocity binary star system in the halo of the Milky Way poses a mystery: how was this system accelerated to its high speed?Accelerating StarsUnlike the uniform motion in the Galactic disk, stars in the Milky Ways halo exhibit a huge diversity of orbits that are usually tilted relative to the disk and have a variety of speeds. One type of halo star, so-called hyper-velocity stars, travel with speeds that can approach the escape velocity of the Galaxy.How do these hyper-velocity stars come about? Assuming they form in the Galactic disk, there are multiple proposed scenarios through which they could be accelerated and injected into the halo, such as:Ejection after a close encounter with the supermassive black hole at the Galactic centerEjection due to a nearby supernova explosionEjection as the result of a dynamical interaction in a dense stellar population.Further observations of hyper-velocity stars are necessary to identify the mechanism responsible for their acceleration.J1211s SurpriseModels of J1211s orbit show it did not originate from the Galactic center (black dot). The solar symbol shows the position of the Sun and the star shows the current position of J1211. The bottom two panels show two depictions(x-y plane and r-z plane) of estimated orbits of J1211 over the past 10 Gyr. [Nmeth et al. 2016]To this end, a team of scientists led by Pter Nmeth (Friedrich Alexander University, Erlangen-Nrnberg) recently studied the candidate halo hyper-velocity star SDSS J121150.27+143716.2. The scientists obtained spectroscopy of J1211 using spectrographs at the Keck Telescope in Hawaii and ESOs Very Large Telescope in Chile. To their surprise, they discovered the signature of a companion in the spectra: J1211 is actually a binary!Nmeth and collaborators found that J1211, located roughly 18,000 light-years away, is moving at a rapid ~570 km/s relative to the galactic rest frame. The binary system consists of a hot (30,600 K) subdwarf and a

  20. ALIGNMENT OF SUPERMASSIVE BLACK HOLE BINARY ORBITS AND SPINS

    Energy Technology Data Exchange (ETDEWEB)

    Miller, M. Coleman [Department of Astronomy and Joint Space-Science Institute, University of Maryland, College Park, MD 20742-2421 (United States); Krolik, Julian H., E-mail: miller@astro.umd.edu [Department of Physics and Astronomy, Johns Hopkins University, Baltimore, MD 21218 (United States)

    2013-09-01

    Recent studies of accretion onto supermassive black hole binaries suggest that much, perhaps most, of the matter eventually accretes onto one hole or the other. If so, then for binaries whose inspiral from {approx}1 pc to {approx}10{sup -3}-10{sup -2} pc is driven by interaction with external gas, both the binary orbital axis and the individual black hole spins can be reoriented by angular momentum exchange with this gas. Here we show that, unless the binary mass ratio is far from unity, the spins of the individual holes align with the binary orbital axis in a time {approx}few-100 times shorter than the binary orbital axis aligns with the angular momentum direction of the incoming circumbinary gas; the spin of the secondary aligns more rapidly than that of the primary by a factor {approx}(m{sub 1}/m{sub 2}){sup 1/2} > 1. Thus the binary acts as a stabilizing agent, so that for gas-driven systems, the black hole spins are highly likely to be aligned (or counteraligned if retrograde accretion is common) with each other and with the binary orbital axis. This alignment can significantly reduce the recoil speed resulting from subsequent black hole merger.