Radial basis function neural networks applied to NASA SSME data
Wheeler, Kevin R.; Dhawan, Atam P.
1993-01-01
This paper presents a brief report on the application of Radial Basis Function Neural Networks (RBFNN) to the prediction of sensor values for fault detection and diagnosis of the Space Shuttle's Main Engines (SSME). The location of the Radial Basis Function (RBF) node centers was determined with a K-means clustering algorithm. A neighborhood operation about these center points was used to determine the variances of the individual processing notes.
Implementation of Radial Basis Function Neural Network for Image Steganalysis
Sambasiva Rao Baragada; S. Ramakrishna; M.S. Rao; S. Purushothaman
2008-01-01
Steganographic tools and techniques are becoming more potential and widespread. Illegal use of steganography poses serious challenges to the law enforcement agencies. Limited work has been carried out on supervised steganalysis using neural network as a classifier. We present a combined method of identifying the presence of covert information in a carrier image using fisherÃ¢â‚¬â„¢s linear discriminant (FLD) function followed by the radial basis function (RBF). Experiments show promising resu...
Learning of Radial Basis Function Networks: Experimental Results
Czech Academy of Sciences Publication Activity Database
Neruda, Roman
World Scientific and Engineering Society Press, 2002 - (Mastorakis, N.; Mladenov, V.), s. 241-246 ISBN 960-8052-62-9. [World Multi-Conference on Circuits, Systems, Communications and Computeers /6./. Rethymno (GR), 07.07.2002-12.07.2002] R&D Projects: GA ČR GA201/01/1192; GA AV ČR IAB1030006 Institutional research plan: AV0Z1030915 Keywords : radial basis function networks * hybrid learning * soft computing Subject RIV: BA - General Mathematics
Improving Genetic Optimization by Means of Radial Basis Function Networks
Czech Academy of Sciences Publication Activity Database
Bajer, L.; Holeňa, Martin
Seňa : Pont, 2009 - (Vojtáš, P.). s. 95-96 ISBN 978-80-970179-1-0. [ITAT 2009. Conference on Theory and Practice of Information Theory. 25.09.2009-29.09.2009, Kráľova studňa] Institutional research plan: CEZ:AV0Z10300504 Keywords : black-box optimization * evolutionary optimization * genetic algorithms * surrogate modelling * radial basis function networks Subject RIV: IN - Informatics, Computer Science
Nonlinear Image Restoration Using a Radial Basis Function Network
Directory of Open Access Journals (Sweden)
Iiguni Youji
2004-01-01
Full Text Available We propose a nonlinear image restoration method that uses the generalized radial basis function network (GRBFN and a regularization method. The GRBFN is used to estimate the nonlinear blurring function. The regularization method is used to recover the original image from the nonlinearly degraded image. We alternately use the two estimation methods to restore the original image from the degraded image. Since the GRBFN approximates the nonlinear blurring function itself, the existence of the inverse of the blurring process does not need to be assured. A method of adjusting the regularization parameter according to image characteristics is also presented for improving restoration performance.
Implementation of Radial Basis Function Neural Network for Image Steganalysis
Directory of Open Access Journals (Sweden)
Sambasiva Rao Baragada
2008-09-01
Full Text Available Steganographic tools and techniques are becoming more potential and widespread. Illegal use of steganography poses serious challenges to the law enforcement agencies. Limited work has been carried out on supervised steganalysis using neural network as a classifier. We present a combined method of identifying the presence of covert information in a carrier image using fisherÃ¢â‚¬â„¢s linear discriminant (FLD function followed by the radial basis function (RBF. Experiments show promising results when compared to the existing supervised steganalysis methods, but arranging the retrieved information is still a challenging problem.
An improved radial basis function network for structural reliability analysis
International Nuclear Information System (INIS)
Approximation methods such as response surface method and artificial neural network (ANN) method are widely used to alleviate the computation costs in structural reliability analysis. However most of the ANN methods proposed in the literature suffer various drawbacks such as poor choice of parameter setting, poor generalization and local minimum. In this study, a support vector machine-based radial basis function (RBF) network method is proposed, in which the improved RBF model is used to approximate the limit state function and then is connected to a reliability method to estimate failure probability. Since the learning algorithm of RBF network is replaced by the support vector algorithm, the advantage of the latter, such as good generalization ability and global optimization are propagated to the former, thus the inherent drawback of RBF network can be defeated. Numerical examples are given to demonstrate the applicability of the improved RBF network method in structural reliability analysis, as well as to illustrate the validity and effectiveness of the proposed method
Nonlinear Time Series Forecast Using Radial Basis Function Neural Networks
Institute of Scientific and Technical Information of China (English)
ZHENG Xin; CHEN Tian-Lun
2003-01-01
In the research of using Radial Basis Function Neural Network (RBF NN) forecasting nonlinear timeseries, we investigate how the different clusterings affect the process of learning and forecasting. We find that k-meansclustering is very suitable. In order to increase the precision we introduce a nonlinear feedback term to escape from thelocal minima of energy, then we use the model to forecast the nonlinear time series which are produced by Mackey-Glassequation and stocks. By selecting the k-means clustering and the suitable feedback term, much better forecasting resultsare obtained.
Nonlinear Time Series Forecast Using Radial Basis Function Neural Networks
Institute of Scientific and Technical Information of China (English)
ZHENGXin; CHENTian-Lun
2003-01-01
In the research of using Radial Basis Function Neural Network (RBF NN) forecasting nonlinear time series, we investigate how the different clusterings affect the process of learning and forecasting. We find that k-means clustering is very suitable. In order to increase the precision we introduce a nonlinear feedback term to escape from the local minima of energy, then we use the model to forecast the nonlinear time series which are produced by Mackey-Glass equation and stocks. By selecting the k-means clustering and the suitable feedback term, much better forecasting results are obtained.
Dynamics of learning near singularities in radial basis function networks.
Wei, Haikun; Amari, Shun-Ichi
2008-09-01
The radial basis function (RBF) networks are one of the most widely used models for function approximation in the regression problem. In the learning paradigm, the best approximation is recursively or iteratively searched for based on observed data (teacher signals). One encounters difficulties in such a process when two component basis functions become identical, or when the magnitude of one component becomes null. In this case, the number of the components reduces by one, and then the reduced component recovers as the learning process proceeds further, provided such a component is necessary for the best approximation. Strange behaviors, especially the plateau phenomena, have been observed in dynamics of learning when such reduction occurs. There exist singularities in the space of parameters, and the above reduction takes place at the singular regions. This paper focuses on a detailed analysis of the dynamical behaviors of learning near the overlap and elimination singularities in RBF networks, based on the averaged learning equation that is applicable to both on-line and batch mode learning. We analyze the stability on the overlap singularity by solving the eigenvalues of the Hessian explicitly. Based on the stability analysis, we plot the analytical dynamic vector fields near the singularity, which are then compared to those real trajectories obtained by a numeric method. We also confirm the existence of the plateaus in both batch and on-line learning by simulation. PMID:18693082
Three learning phases for radial-basis-function networks.
Schwenker, F; Kestler, H A; Palm, G
2001-05-01
In this paper, learning algorithms for radial basis function (RBF) networks are discussed. Whereas multilayer perceptrons (MLP) are typically trained with backpropagation algorithms, starting the training procedure with a random initialization of the MLP's parameters, an RBF network may be trained in many different ways. We categorize these RBF training methods into one-, two-, and three-phase learning schemes. Two-phase RBF learning is a very common learning scheme. The two layers of an RBF network are learnt separately; first the RBF layer is trained, including the adaptation of centers and scaling parameters, and then the weights of the output layer are adapted. RBF centers may be trained by clustering, vector quantization and classification tree algorithms, and the output layer by supervised learning (through gradient descent or pseudo inverse solution). Results from numerical experiments of RBF classifiers trained by two-phase learning are presented in three completely different pattern recognition applications: (a) the classification of 3D visual objects; (b) the recognition hand-written digits (2D objects); and (c) the categorization of high-resolution electrocardiograms given as a time series (ID objects) and as a set of features extracted from these time series. In these applications, it can be observed that the performance of RBF classifiers trained with two-phase learning can be improved through a third backpropagation-like training phase of the RBF network, adapting the whole set of parameters (RBF centers, scaling parameters, and output layer weights) simultaneously. This, we call three-phase learning in RBF networks. A practical advantage of two- and three-phase learning in RBF networks is the possibility to use unlabeled training data for the first training phase. Support vector (SV) learning in RBF networks is a different learning approach. SV learning can be considered, in this context of learning, as a special type of one-phase learning, where
Neuronal spike sorting based on radial basis function neural networks
Directory of Open Access Journals (Sweden)
Taghavi Kani M
2011-02-01
Full Text Available "nBackground: Studying the behavior of a society of neurons, extracting the communication mechanisms of brain with other tissues, finding treatment for some nervous system diseases and designing neuroprosthetic devices, require an algorithm to sort neuralspikes automatically. However, sorting neural spikes is a challenging task because of the low signal to noise ratio (SNR of the spikes. The main purpose of this study was to design an automatic algorithm for classifying neuronal spikes that are emitted from a specific region of the nervous system."n "nMethods: The spike sorting process usually consists of three stages: detection, feature extraction and sorting. We initially used signal statistics to detect neural spikes. Then, we chose a limited number of typical spikes as features and finally used them to train a radial basis function (RBF neural network to sort the spikes. In most spike sorting devices, these signals are not linearly discriminative. In order to solve this problem, the aforesaid RBF neural network was used."n "nResults: After the learning process, our proposed algorithm classified any arbitrary spike. The obtained results showed that even though the proposed Radial Basis Spike Sorter (RBSS reached to the same error as the previous methods, however, the computational costs were much lower compared to other algorithms. Moreover, the competitive points of the proposed algorithm were its good speed and low computational complexity."n "nConclusion: Regarding the results of this study, the proposed algorithm seems to serve the purpose of procedures that require real-time processing and spike sorting.
Directory of Open Access Journals (Sweden)
Ali Nasrollahnejad
2014-10-01
Full Text Available Recording of ground motions with high amplitudes of acceleration and velocity play a key role for designing engineering projects. Here we try to represent a reasonable prediction of peak ground acceleration which may create more than g acceleration in different regions. In this study, applying different structures of Neural Networks (NN and using four key parameters, moment magnitude, rupture distance, site class, and style of faulting which an earthquake may cause serious effects on a site. We introduced a radial basis function network (RBF with mean error of 0.014, as the best network for estimating the occurrence probability of an earthquake with large value of PGA ≥1g in a region. Also the results of applying back propagation in feed forward neural network (FFBP show a good coincidence with designed RBF results for predicting high value of PGA, with Mean error of 0.017.
A Novel Algorithm of Network Trade Customer Classification Based on Fourier Basis Functions
Directory of Open Access Journals (Sweden)
Li Xinwu
2013-11-01
Full Text Available Learning algorithm of neural network is always an important research contents in neural network theory research and application field, learning algorithm about the feed-forward neural network has no satisfactory solution in particular for its defects in calculation speed. The paper presents a new Fourier basis functions neural network algorithm and applied it to classify network trade customer. First, 21 customer classification indicators are designed, based on characteristics and behaviors analysis of network trade customer, including customer characteristics type variables and customer behaviors type variables,; Second, Fourier basis functions is used to improve the calculation flow and algorithm structure of original BP neural network algorithm to speed up its convergence and then a new Fourier basis neural network model is constructed. Finally the experimental results show that the problem of convergence speed can been solved, and the accuracy of the customer classification are ensured when the new algorithm is used in network trade customer classification practically.
An Efficient Weather Forecasting System using Radial Basis Function Neural Network
Directory of Open Access Journals (Sweden)
Tiruvenkadam Santhanam
2011-01-01
Full Text Available Problem statement: Accurate weather forecasting plays a vital role for planning day to day activities. Neural network has been use in numerous meteorological applications including weather forecasting. Approach: A neural network model has been developed for weather forecasting, based on various factors obtained from meteorological experts. This study evaluates the performance of Radial Basis Function (RBF with Back Propagation (BPN neural network. The back propagation neural network and radial basis function neural network were used to test the performance in order to investigate effective forecasting technique. Results: The prediction accuracy of RBF was 88.49%. Conclusion: The results indicate that proposed radial basis function neural network is better than back propagation neural network.
Noise reduction technique for images using radial basis function neural networks
International Nuclear Information System (INIS)
This paper presents a NN (Neural Network) based model for reducing the noise from images. This is a RBF (Radial Basis Function) network which is used to reduce the effect of noise and blurring from the captured images. The proposed network calculates the mean MSE (Mean Square Error) and PSNR (Peak Signal to Noise Ratio) of the noisy images. The proposed network has also been successfully applied to medical images. The performance of the trained RBF network has been compared with the MLP (Multilayer Perceptron) Network and it has been demonstrated that the performance of the RBF network is better than the MLP network. (author)
Evolutionary Trained Radial Basis Function Networks for Robot Control
Czech Academy of Sciences Publication Activity Database
Vidnerová, Petra; Slušný, Stanislav; Neruda, Roman
Piscataway: IEEE, 2008, s. 833-838. ISBN 978-1-4244-2286-9. [ICARCV 2008. International Conference on Control, Automation, Robotics & Vision /10./. Hanoi (VN), 17.12.2008-20.12.2008] R&D Projects: GA AV ČR KJB100300804 Institutional research plan: CEZ:AV0Z10300504 Keywords : evolutionary robotics * RBF networks * genetic algorithms Subject RIV: IN - Informatics, Computer Science
Satisfiability of logic programming based on radial basis function neural networks
Energy Technology Data Exchange (ETDEWEB)
Hamadneh, Nawaf; Sathasivam, Saratha; Tilahun, Surafel Luleseged; Choon, Ong Hong [School of Mathematical Sciences, Universiti Sains Malaysia, 11800 USM, Penang (Malaysia)
2014-07-10
In this paper, we propose a new technique to test the Satisfiability of propositional logic programming and quantified Boolean formula problem in radial basis function neural networks. For this purpose, we built radial basis function neural networks to represent the proportional logic which has exactly three variables in each clause. We used the Prey-predator algorithm to calculate the output weights of the neural networks, while the K-means clustering algorithm is used to determine the hidden parameters (the centers and the widths). Mean of the sum squared error function is used to measure the activity of the two algorithms. We applied the developed technique with the recurrent radial basis function neural networks to represent the quantified Boolean formulas. The new technique can be applied to solve many applications such as electronic circuits and NP-complete problems.
Fusion prediction based on the attribute clustering net-work and the radial basis function
Institute of Scientific and Technical Information of China (English)
无
2001-01-01
A fusion prediction method is introduced on the basis of attribute clustering network and radial basis functions. An algorithm of quasi-self organization for developing the model for the fusion prediction is introduced. Some simulation results for chaotic time series are presented to show the performance of the method.
Directory of Open Access Journals (Sweden)
Yunfeng Wu
2014-01-01
Full Text Available This paper presents a novel adaptive linear and normalized combination (ALNC method that can be used to combine the component radial basis function networks (RBFNs to implement better function approximation and regression tasks. The optimization of the fusion weights is obtained by solving a constrained quadratic programming problem. According to the instantaneous errors generated by the component RBFNs, the ALNC is able to perform the selective ensemble of multiple leaners by adaptively adjusting the fusion weights from one instance to another. The results of the experiments on eight synthetic function approximation and six benchmark regression data sets show that the ALNC method can effectively help the ensemble system achieve a higher accuracy (measured in terms of mean-squared error and the better fidelity (characterized by normalized correlation coefficient of approximation, in relation to the popular simple average, weighted average, and the Bagging methods.
The Rate of Approximation of Gaussian Radial Basis Neural Networks in Continuous Function Space
Institute of Scientific and Technical Information of China (English)
Ting Fan XIE; Fei Long CAO
2013-01-01
There have been many studies on the dense theorem of approximation by radial basis feedforword neural networks,and some approximation problems by Gaussian radial basis feedforward neural networks (GRBFNs) in some special function space have also been investigated.This paper considers the approximation by the GRBFNs in continuous function space.It is proved that the rate of approximation by GRNFNs with nd neurons to any continuous function f defined on a compact subset K （C） Rd can be controlled by ω(f,n-1/2),where ω(f,t) is the modulus of continuity of the function f.
Directory of Open Access Journals (Sweden)
Shengqiao Ni
Full Text Available This paper presents improvements to the conventional Topology Representing Network to build more appropriate topology relationships. Based on this improved Topology Representing Network, we propose a novel method for online dimensionality reduction that integrates the improved Topology Representing Network and Radial Basis Function Network. This method can find meaningful low-dimensional feature structures embedded in high-dimensional original data space, process nonlinear embedded manifolds, and map the new data online. Furthermore, this method can deal with large datasets for the benefit of improved Topology Representing Network. Experiments illustrate the effectiveness of the proposed method.
Radial basis function neural network for power system load-flow
International Nuclear Information System (INIS)
This paper presents a method for solving the load-flow problem of the electric power systems using radial basis function (RBF) neural network with a fast hybrid training method. The main idea is that some operating conditions (values) are needed to solve the set of non-linear algebraic equations of load-flow by employing an iterative numerical technique. Therefore, we may view the outputs of a load-flow program as functions of the operating conditions. Indeed, we are faced with a function approximation problem and this can be done by an RBF neural network. The proposed approach has been successfully applied to the 10-machine and 39-bus New England test system. In addition, this method has been compared with that of a multi-layer perceptron (MLP) neural network model. The simulation results show that the RBF neural network is a simpler method to implement and requires less training time to converge than the MLP neural network. (author)
Diagnosis of Cervical Cancer Using the Median M-Type Radial Basis Function (MMRBF) Neural Network
Gómez-Mayorga, Margarita E.; Gallegos-Funes, Francisco J.; de-La-Rosa-Vázquez, José M.; Cruz-Santiago, Rene; Ponomaryov, Volodymyr
The automatic analysis of Pap smear microscopic images is one of the most interesting fields in biomedical image processing. In this paper we present the capability of the Median M-Type Radial Basis Function (MMRBF) neural network in the classification of cervical cancer cells. From simulation results we observe that the MMRBF neural network has better classification capabilities in comparison with the Median RBF algorithm used as comparative.
Radial basis function neural networks with sequential learning MRAN and its applications
Sundararajan, N; Wei Lu Ying
1999-01-01
This book presents in detail the newly developed sequential learning algorithm for radial basis function neural networks, which realizes a minimal network. This algorithm, created by the authors, is referred to as Minimal Resource Allocation Networks (MRAN). The book describes the application of MRAN in different areas, including pattern recognition, time series prediction, system identification, control, communication and signal processing. Benchmark problems from these areas have been studied, and MRAN is compared with other algorithms. In order to make the book self-contained, a review of t
Design of Radial Basis Function Neural Networks for Software Effort Estimation
Directory of Open Access Journals (Sweden)
Ali Idri
2010-07-01
Full Text Available In spite of the several software effort estimation models developed over the last 30 years, providing accurate estimates of the software project under development is still unachievable goal. Therefore, many researchers are working on the development of new models and the improvement of the existing ones using artificial intelligence techniques such as: case-based reasoning, decision trees, genetic algorithms and neural networks. This paper is devoted to the design of Radial Basis Function Networks for software cost estimation. It shows the impact of the RBFN network structure, especially the number of neurons in the hidden layer and the widths of the basis function, on the accuracy of the produced estimates measured by means of MMRE and Pred indicators. The empirical study uses two different software project datasets namely, artificial COCOMO'81 and Tukutuku datasets.
Upset Prediction in Friction Welding Using Radial Basis Function Neural Network
Directory of Open Access Journals (Sweden)
Wei Liu
2013-01-01
Full Text Available This paper addresses the upset prediction problem of friction welded joints. Based on finite element simulations of inertia friction welding (IFW, a radial basis function (RBF neural network was developed initially to predict the final upset for a number of welding parameters. The predicted joint upset by the RBF neural network was compared to validated finite element simulations, producing an error of less than 8.16% which is reasonable. Furthermore, the effects of initial rotational speed and axial pressure on the upset were investigated in relation to energy conversion with the RBF neural network. The developed RBF neural network was also applied to linear friction welding (LFW and continuous drive friction welding (CDFW. The correlation coefficients of RBF prediction for LFW and CDFW were 0.963 and 0.998, respectively, which further suggest that an RBF neural network is an effective method for upset prediction of friction welded joints.
Liu, Jinkun
2013-01-01
Radial Basis Function (RBF) Neural Network Control for Mechanical Systems is motivated by the need for systematic design approaches to stable adaptive control system design using neural network approximation-based techniques. The main objectives of the book are to introduce the concrete design methods and MATLAB simulation of stable adaptive RBF neural control strategies. In this book, a broad range of implementable neural network control design methods for mechanical systems are presented, such as robot manipulators, inverted pendulums, single link flexible joint robots, motors, etc. Advanced neural network controller design methods and their stability analysis are explored. The book provides readers with the fundamentals of neural network control system design. This book is intended for the researchers in the fields of neural adaptive control, mechanical systems, Matlab simulation, engineering design, robotics and automation. Jinkun Liu is a professor at Beijing University of Aeronautics and Astronauti...
Computing single step operators of logic programming in radial basis function neural networks
International Nuclear Information System (INIS)
Logic programming is the process that leads from an original formulation of a computing problem to executable programs. A normal logic program consists of a finite set of clauses. A valuation I of logic programming is a mapping from ground atoms to false or true. The single step operator of any logic programming is defined as a function (Tp:I→I). Logic programming is well-suited to building the artificial intelligence systems. In this study, we established a new technique to compute the single step operators of logic programming in the radial basis function neural networks. To do that, we proposed a new technique to generate the training data sets of single step operators. The training data sets are used to build the neural networks. We used the recurrent radial basis function neural networks to get to the steady state (the fixed point of the operators). To improve the performance of the neural networks, we used the particle swarm optimization algorithm to train the networks
Computing single step operators of logic programming in radial basis function neural networks
Energy Technology Data Exchange (ETDEWEB)
Hamadneh, Nawaf; Sathasivam, Saratha; Choon, Ong Hong [School of Mathematical Sciences, Universiti Sains Malaysia, 11800 USM, Penang (Malaysia)
2014-07-10
Logic programming is the process that leads from an original formulation of a computing problem to executable programs. A normal logic program consists of a finite set of clauses. A valuation I of logic programming is a mapping from ground atoms to false or true. The single step operator of any logic programming is defined as a function (T{sub p}:I→I). Logic programming is well-suited to building the artificial intelligence systems. In this study, we established a new technique to compute the single step operators of logic programming in the radial basis function neural networks. To do that, we proposed a new technique to generate the training data sets of single step operators. The training data sets are used to build the neural networks. We used the recurrent radial basis function neural networks to get to the steady state (the fixed point of the operators). To improve the performance of the neural networks, we used the particle swarm optimization algorithm to train the networks.
Petković, Dalibor; Gocic, Milan; Shamshirband, Shahaboddin; Qasem, Sultan Noman; Trajkovic, Slavisa
2016-08-01
Accurate estimation of the reference evapotranspiration (ET0) is important for the water resource planning and scheduling of irrigation systems. For this purpose, the radial basis function network with particle swarm optimization (RBFN-PSO) and radial basis function network with back propagation (RBFN-BP) were used in this investigation. The FAO-56 Penman-Monteith equation was used as reference equation to estimate ET0 for Serbia during the period of 1980-2010. The obtained simulation results confirmed the proposed models and were analyzed using the root mean-square error (RMSE), the mean absolute error (MAE), and the coefficient of determination ( R 2). The analysis showed that the RBFN-PSO had better statistical characteristics than RBFN-BP and can be helpful for the ET0 estimation.
Institute of Scientific and Technical Information of China (English)
ZHAO Min; CUI Wei-cheng
2007-01-01
Improving the efficiency of ship optimization is crucial for modern ship design. Compared with traditional methods, multidisciplinary design optimization (MDO) is a more promising approach. For this reason, Collaborative Optimization (CO) is discussed and analyzed in this paper. As one of the most frequently applied MDO methods, CO promotes autonomy of disciplines while providing a coordinating mechanism guaranteeing progress toward an optimum and maintaining interdisciplinary compatibility. However, there are some difficulties in applying the conventional CO method, such as difficulties in choosing an initial point and tremendous computational requirements. For the purpose of overcoming these problems, optimal Latin hypercube design and Radial basis function network were applied to CO. Optimal Latin hypercube design is a modified Latin Hypercube design. Radial basis function network approximates the optimization model, and is updated during the optimization process to improve accuracy. It is shown by examples that the computing efficiency and robustness of this CO method are higher than with the conventional CO method.
Petković, Dalibor; Gocic, Milan; Shamshirband, Shahaboddin; Qasem, Sultan Noman; Trajkovic, Slavisa
2015-06-01
Accurate estimation of the reference evapotranspiration (ET0) is important for the water resource planning and scheduling of irrigation systems. For this purpose, the radial basis function network with particle swarm optimization (RBFN-PSO) and radial basis function network with back propagation (RBFN-BP) were used in this investigation. The FAO-56 Penman-Monteith equation was used as reference equation to estimate ET0 for Serbia during the period of 1980-2010. The obtained simulation results confirmed the proposed models and were analyzed using the root mean-square error (RMSE), the mean absolute error (MAE), and the coefficient of determination (R 2). The analysis showed that the RBFN-PSO had better statistical characteristics than RBFN-BP and can be helpful for the ET0 estimation.
Three Phase Induction Motor Faults Detection by Using Radial Basis Function Neural Network
Abd Alla, Ahmed N.
2006-01-01
In the present study the Artificial Neural Network (ANN) technique for the detection of (bearing and stator inter turn faults) incipient faults in an induction motor bas been explored. Radial basis function approach has been used for ANN Training and test. Three phase instantaneous currents and angular velocity depending on rotor speed are utilized in proposed approach. An experimental setup is used to implement an online fault defector
Radial Basis Function Neural Network Based Super-Resolution Restoration for an Underspled Image
Institute of Scientific and Technical Information of China (English)
苏秉华; 金伟其; 牛丽红
2004-01-01
To achieve restoration of high frequency information for an underspled and degraded low-resolution image, a nonlinear and real-time processing method-the radial basis function (RBF) neural network based super-resolution method of restoration is proposed. The RBF network configuration and processing method is suitable for a high resolution restoration from an underspled low-resolution image. The soft-competition learning scheme based on the k-means algorithm is used, and can achieve higher mapping approximation accuracy without increase in the network size. Experiments showed that the proposed algorithm can achieve a super-resolution restored image from an underspled and degraded low-resolution image, and requires a shorter training time when compared with the multiplayer perception (MLP) network.
Radial basis function network learns ceramic processing and predicts related strength and density
Energy Technology Data Exchange (ETDEWEB)
Cios, K.J.; Baaklini, G.Y.; Vary, A.; Tjia, R.E.
1993-05-01
Radial basis function (RBF) neural networks were trained using the data from 273 Si3N4 modulus of rupture (MOR) bars which were tested at room temperature and 135 MOR bars which were tested at 1370 C. Milling time, sintering time, and sintering gas pressure were the processing parameters used as the input features. Flexural strength and density were the outputs by which the RBF networks were assessed. The 'nodes-at-data-points' method was used to set the hidden layer centers and output layer training used the gradient descent method. The RBF network predicted strength with an average error of less than 12 percent and density with an average error of less than 2 percent. Further, the RBF network demonstrated a potential for optimizing and accelerating the development and processing of ceramic materials.
Radial basis function network learns ceramic processing and predicts related strength and density
Energy Technology Data Exchange (ETDEWEB)
Cios, K.J.; Baaklini, G.Y.; Vary, A. (NASA Lewis Research Center, Cleveland, OH (United States)); Tjia, R.E. (Univ. of Toledo, OH (United States))
1994-07-01
Radial basis function (RBF) neural networks were trained using the data from 273 Si[sub 3]N[sub 4] modulus of rupture (MOR) bars that were tested at room temperature and 135 MOR bars that were tested at 1,370 C. Milling time, sintering time, and sintering gas pressure were the processing parameters used s the input features. Flexural strength and density were the outputs by which the RBF networks were assessed. The nodes at data points'' method was used to set the hidden layer centers and output layer training used the gradient descent method. The RBF network predicted strength with an average error of less than 12% and density with an average error of less than 2%. Further, the RBF network demonstrated a potential for optimizing and accelerating the development and processing of emerging ceramic materials.
Radial basis function network learns ceramic processing and predicts related strength and density
Cios, Krzysztof J.; Baaklini, George Y.; Vary, Alex; Tjia, Robert E.
1993-01-01
Radial basis function (RBF) neural networks were trained using the data from 273 Si3N4 modulus of rupture (MOR) bars which were tested at room temperature and 135 MOR bars which were tested at 1370 C. Milling time, sintering time, and sintering gas pressure were the processing parameters used as the input features. Flexural strength and density were the outputs by which the RBF networks were assessed. The 'nodes-at-data-points' method was used to set the hidden layer centers and output layer training used the gradient descent method. The RBF network predicted strength with an average error of less than 12 percent and density with an average error of less than 2 percent. Further, the RBF network demonstrated a potential for optimizing and accelerating the development and processing of ceramic materials.
Supervised Learning Errors by Radial Basis Function Neural Networks and Regularization Networks
Czech Academy of Sciences Publication Activity Database
Neruda, Roman; Vidnerová, Petra
Los Alamitos : IEEE Computer Society, 2008, s. 193-196. ISBN 978-1-4244-3430-5. [SIP 2008. International Symposium on Signal Processing, Image Processing and Pattern Recognition /1./. Hainan Island (CN), 13.12.2008-15.12.2008] R&D Projects: GA ČR GA201/08/1744 Institutional research plan: CEZ:AV0Z10300504 Keywords : regularization * radial basis function * training error Subject RIV: IN - Informatics, Computer Science
International Nuclear Information System (INIS)
This paper introduces a novel algorithm for determining the structure of a radial basis function (RBF) network (the number of hidden units) while it is used for dynamic modeling of chaotic time series. It can be seen that the hidden units in the RBF network can form hyperplanes to partition the input space into various regions in each of which it is possible to approximate the dynamics with a basis function. The number of regions corresponds to the number of hidden units. The basic idea of the proposed algorithm is to partition the input space by fractal scaling of the chaotic time series being modeled. By fractal scaling process, the number of basis functions (hidden units) as well as the number of input variables can be specified. Accordingly, the network topology is efficiently determined based on the complexity of the underlying dynamics as reflected in the observed time series. The feasibility of the proposed scheme is examined through dynamic modeling of the well-known chaotic time series. The results show that the new method can improve the predictability of chaotic time series with a suitable number of hidden units compared to that of reported in the literature
Lu, Y; Sundararajan, N; Saratchandran, P
1998-01-01
This paper presents a detailed performance analysis of the minimal resource allocation network (M-RAN) learning algorithm, M-RAN is a sequential learning radial basis function neural network which combines the growth criterion of the resource allocating network (RAN) of Platt (1991) with a pruning strategy based on the relative contribution of each hidden unit to the overall network output. The resulting network leads toward a minimal topology for the RAN. The performance of this algorithm is compared with the multilayer feedforward networks (MFNs) trained with 1) a variant of the standard backpropagation algorithm, known as RPROP and 2) the dependence identification (DI) algorithm of Moody and Antsaklis on several benchmark problems in the function approximation and pattern classification areas. For all these problems, the M-RAN algorithm is shown to realize networks with far fewer hidden neurons with better or same approximation/classification accuracy. Further, the time taken for learning (training) is also considerably shorter as M-RAN does not require repeated presentation of the training data. PMID:18252454
D'Souza, Adora M.; Abidin, Anas Zainul; Nagarajan, Mahesh B.; Wismüller, Axel
2016-03-01
We investigate the applicability of a computational framework, called mutual connectivity analysis (MCA), for directed functional connectivity analysis in both synthetic and resting-state functional MRI data. This framework comprises of first evaluating non-linear cross-predictability between every pair of time series prior to recovering the underlying network structure using community detection algorithms. We obtain the non-linear cross-prediction score between time series using Generalized Radial Basis Functions (GRBF) neural networks. These cross-prediction scores characterize the underlying functionally connected networks within the resting brain, which can be extracted using non-metric clustering approaches, such as the Louvain method. We first test our approach on synthetic models with known directional influence and network structure. Our method is able to capture the directional relationships between time series (with an area under the ROC curve = 0.92 +/- 0.037) as well as the underlying network structure (Rand index = 0.87 +/- 0.063) with high accuracy. Furthermore, we test this method for network recovery on resting-state fMRI data, where results are compared to the motor cortex network recovered from a motor stimulation sequence, resulting in a strong agreement between the two (Dice coefficient = 0.45). We conclude that our MCA approach is effective in analyzing non-linear directed functional connectivity and in revealing underlying functional network structure in complex systems.
Prediction Study on PCI Failure of Reactor Fuel Based on a Radial Basis Function Neural Network
Directory of Open Access Journals (Sweden)
Xinyu Wei
2016-01-01
Full Text Available Pellet-clad interaction (PCI is one of the major issues in fuel rod design and reactor core operation in water cooled reactors. The prediction of fuel rod failure by PCI is studied in this paper by the method of radial basis function neural network (RBFNN. The neural network is built through the analysis of the existing experimental data. It is concluded that it is a suitable way to reduce the calculation complexity. A self-organized RBFNN is used in our study, which can vary its structure dynamically in order to maintain the prediction accuracy. For the purpose of the appropriate network complexity and overall computational efficiency, the hidden neurons in the RBFNN can be changed online based on the neuron activity and mutual information. The presented method is tested by the experimental data from the reference, and the results demonstrate its effectiveness.
Wang, Bing; Meng, Yao-hua; Yu, Xiao-Hong
2014-01-01
For learning problem of Radial Basis Function Process Neural Network (RBF-PNN), an optimization training method based on GA combined with SA is proposed in this paper. Through building generalized Fr\\'echet distance to measure similarity between time-varying function samples, the learning problem of radial basis centre functions and connection weights is converted into the training on corresponding discrete sequence coefficients. Network training objective function is constructed according to...
Shankar, Praveen
The performance of nonlinear control algorithms such as feedback linearization and dynamic inversion is heavily dependent on the fidelity of the dynamic model being inverted. Incomplete or incorrect knowledge of the dynamics results in reduced performance and may lead to instability. Augmenting the baseline controller with approximators which utilize a parametrization structure that is adapted online reduces the effect of this error between the design model and actual dynamics. However, currently existing parameterizations employ a fixed set of basis functions that do not guarantee arbitrary tracking error performance. To address this problem, we develop a self-organizing parametrization structure that is proven to be stable and can guarantee arbitrary tracking error performance. The training algorithm to grow the network and adapt the parameters is derived from Lyapunov theory. In addition to growing the network of basis functions, a pruning strategy is incorporated to keep the size of the network as small as possible. This algorithm is implemented on a high performance flight vehicle such as F-15 military aircraft. The baseline dynamic inversion controller is augmented with a Self-Organizing Radial Basis Function Network (SORBFN) to minimize the effect of the inversion error which may occur due to imperfect modeling, approximate inversion or sudden changes in aircraft dynamics. The dynamic inversion controller is simulated for different situations including control surface failures, modeling errors and external disturbances with and without the adaptive network. A performance measure of maximum tracking error is specified for both the controllers a priori. Excellent tracking error minimization to a pre-specified level using the adaptive approximation based controller was achieved while the baseline dynamic inversion controller failed to meet this performance specification. The performance of the SORBFN based controller is also compared to a fixed RBF network
Markopoulos, Angelos P.; Georgiopoulos, Sotirios; Manolakos, Dimitrios E.
2016-03-01
Various artificial neural networks types are examined and compared for the prediction of surface roughness in manufacturing technology. The aim of the study is to evaluate different kinds of neural networks and observe their performance and applicability on the same problem. More specifically, feed-forward artificial neural networks are trained with three different back propagation algorithms, namely the adaptive back propagation algorithm of the steepest descent with the use of momentum term, the back propagation Levenberg-Marquardt algorithm and the back propagation Bayesian algorithm. Moreover, radial basis function neural networks are examined. All the aforementioned algorithms are used for the prediction of surface roughness in milling, trained with the same input parameters and output data so that they can be compared. The advantages and disadvantages, in terms of the quality of the results, computational cost and time are identified. An algorithm for the selection of the spread constant is applied and tests are performed for the determination of the neural network with the best performance. The finally selected neural networks can satisfactorily predict the quality of the manufacturing process performed, through simulation and input-output surfaces for combinations of the input data, which correspond to milling cutting conditions.
Directory of Open Access Journals (Sweden)
Dongliang Guo
2014-01-01
Full Text Available Indoor localization technique has received much attention in recent years. Many techniques have been developed to solve the problem. Among the recent proposed methods, radio frequency identification (RFID indoor localization technology has the advantages of low-cost, noncontact, non-line-of-sight, and high precision. This paper proposed two radial basis function (RBF neural network based indoor localization methods. The RBF neural networks are trained to learn the mapping relationship between received signal strength indication values and position of objects. Traditional method used the received signal strength directly as the input of neural network; we added another input channel by taking the difference of the received signal strength, thus improving the reliability and precision of positioning. Fuzzy clustering is used to determine the center of radial basis function. In order to reduce the impact of signal fading due to non-line-of-sight and multipath transmission in indoor environment, we improved the Gaussian filter to process received signal strength values. The experimental results show that the proposed method outperforms the existing methods as well as improves the reliability and precision of the RFID indoor positioning system.
Circular antenna array pattern analysis using radial basis function neural network
International Nuclear Information System (INIS)
A method is proposed to design circular antenna array for the given gain and beam width using Artificial Neural Networks. In optimizing circular arrays, the parameters to be controlled are excitation of the elements, their separation, lengths and the circle radius. This paper deals about finding the parameters of radiation pattern of given uniform circular antenna array. Initially, the network is trained with a set of input-output data pairs. The trained network is used for testing. The training data set is generated from MATLAB simulation with number of elements N=5, 10, 15 and 20 elements of uniform circular array, respectively, distributed over a given circle, assuming 20 training cases. The number of input nodes, hidden nodes and output nodes are 20, 20 and 1, respectively. Predicted values of the neural network are compared with those of MATLAB simulation results and are found to be in agreement. This work establishes the application of Radial Basis Function Neural Network (RBFNN) for circular array pattern optimization. RBFNN is able to predict the output values with 97% of accuracy. This work proves that RBFNN can be used for circular antenna array design.
Johnsson, Roger
2006-11-01
Methods to measure and monitor the cylinder pressure in internal combustion engines can contribute to reduced fuel consumption, noise and exhaust emissions. As direct measurements of the cylinder pressure are expensive and not suitable for measurements in vehicles on the road indirect methods which measure cylinder pressure have great potential value. In this paper, a non-linear model based on complex radial basis function (RBF) networks is proposed for the reconstruction of in-cylinder pressure pulse waveforms. Input to the network is the Fourier transforms of both engine structure vibration and crankshaft speed fluctuation. The primary reason for the use of Fourier transforms is that different frequency regions of the signals are used for the reconstruction process. This approach also makes it easier to reduce the amount of information that is used as input to the RBF network. The complex RBF network was applied to measurements from a 6-cylinder ethanol powered diesel engine over a wide range of running conditions. Prediction accuracy was validated by comparing a number of parameters between the measured and predicted cylinder pressure waveform such as maximum pressure, maximum rate of pressure rise and indicated mean effective pressure. The performance of the network was also evaluated for a number of untrained running conditions that differ both in speed and load from the trained ones. The results for the validation set were comparable to the trained conditions.
Research on motion compensation method based on neural network of radial basis function
Institute of Scientific and Technical Information of China (English)
Zuo Yunbo
2014-01-01
The machining precision not only depends on accurate mechanical structure but also depends on motion compensation method. If manufacturing precision of mechanical structure cannot be improved, the motion compensation is a reasonable way to improve motion precision. A motion compensation method based on neural network of radial basis function (RBF) was presented in this paper. It utilized the infinite approximation advantage of RBF neural network to fit the motion error curve. The best hidden neural quantity was optimized by training the motion error data and calculating the total sum of squares. The best curve coefficient matrix was got and used to calculate motion compensation values. The experiments showed that the motion errors could be reduced obviously by utilizing the method in this paper.
Institute of Scientific and Technical Information of China (English)
Jun Wang; Guoqing Chen; Tuo Zhu; Shumei Gao; Bailin Wei; Linna Bi
2009-01-01
@@ The fluorescence spectra of synthetic food dyes of sunset yellow and tartrazine are analyzed.The fluorescence peak wavelengths of sunset yellow and tartrazine are 576 and 569 nm, respectively, while the fluorescence spectra widths are 480-750 and 500-750 nm induced by ultraviolet light between 310-400 nm.The fluorescence spectra of sunset yellow overlap heavily with those of tartrazine, so it is diffic ult to distinguish them.Based on the principle of radial basis function neural network, a neural network is obtained from the training of the 14 groups of experimental data.The results show that the species of sunset yellow and tartrazine could be recognized accurately.This method has potential applications in other synthetic food dyes detection and food safety inspection.
Dynamics of on-line learning in radial basis function networks
Freeman, Jason A. S.; Saad, David
1997-07-01
On-line learning is examined for the radial basis function network, an important and practical type of neural network. The evolution of generalization error is calculated within a framework which allows the phenomena of the learning process, such as the specialization of the hidden units, to be analyzed. The distinct stages of training are elucidated, and the role of the learning rate described. The three most important stages of training, the symmetric phase, the symmetry-breaking phase, and the convergence phase, are analyzed in detail; the convergence phase analysis allows derivation of maximal and optimal learning rates. As well as finding the evolution of the mean system parameters, the variances of these parameters are derived and shown to be typically small. Finally, the analytic results are strongly confirmed by simulations.
On-line Cutting Quality Recognition in Milling Using a Radical Basis Function Neural Network
Institute of Scientific and Technical Information of China (English)
无
2000-01-01
Tool wear, chatter vibration, chip breaking and built-up edge are main phenomena to be monitored in modern manufacturing processes, which are considered as important factors to the quality of products.They are closely related to the cutting parameters, which are to be selected in manufacturing process.However, it is very difficult to measure directly the cutting quality based on on-line monitoring.In this study, the relationship between the cutting parameters and cutting quality is analyzed.A Radical Basis Function (RBF) neural network based on-line quality recognition scheme is also presented, which monitors the level of surface roughness.The experimental results reveal that the RBF neural network has a high prediction success rate.
Learning Errors by Radial Basis Function Neural Networks and Regularization Networks
Czech Academy of Sciences Publication Activity Database
Neruda, Roman; Vidnerová, Petra
2009-01-01
Roč. 1, č. 2 (2009), s. 49-57. ISSN 2005-4262 R&D Projects: GA MŠk(CZ) 1M0567 Institutional research plan: CEZ:AV0Z10300504 Keywords : neural network * RBF networks * regularization * learning Subject RIV: IN - Informatics, Computer Science http://www.sersc.org/journals/IJGDC/vol2_no1/5.pdf
DENSENESS OF RADIAL-BASIS FUNCTIONS IN L2（Rn） AND ITS APPLICATIONS IN NEURAL NETWORKS
Institute of Scientific and Technical Information of China (English)
CHENTIANPING; CHENHONG
1996-01-01
The authors discuss problems of approximation to functions in L2 (Rn)and operators from L2(Rn1)to L2(Rn2)by Radial-Basis Functions. The results obtained solve the parblem of capability of RBF neural networks,a basic problem in neural networks.
Chen, Jiajia; Zhao, Pan; Liang, Huawei; Mei, Tao
2014-01-01
The autonomous vehicle is an automated system equipped with features like environment perception, decision-making, motion planning, and control and execution technology. Navigating in an unstructured and complex environment is a huge challenge for autonomous vehicles, due to the irregular shape of road, the requirement of real-time planning, and the nonholonomic constraints of vehicle. This paper presents a motion planning method, based on the Radial Basis Function (RBF) neural network, to guide the autonomous vehicle in unstructured environments. The proposed algorithm extracts the drivable region from the perception grid map based on the global path, which is available in the road network. The sample points are randomly selected in the drivable region, and a gradient descent method is used to train the RBF network. The parameters of the motion-planning algorithm are verified through the simulation and experiment. It is observed that the proposed approach produces a flexible, smooth, and safe path that can fit any road shape. The method is implemented on autonomous vehicle and verified against many outdoor scenes; furthermore, a comparison of proposed method with the existing well-known Rapidly-exploring Random Tree (RRT) method is presented. The experimental results show that the proposed method is highly effective in planning the vehicle path and offers better motion quality. PMID:25237902
Directory of Open Access Journals (Sweden)
Jiajia Chen
2014-09-01
Full Text Available The autonomous vehicle is an automated system equipped with features like environment perception, decision-making, motion planning, and control and execution technology. Navigating in an unstructured and complex environment is a huge challenge for autonomous vehicles, due to the irregular shape of road, the requirement of real-time planning, and the nonholonomic constraints of vehicle. This paper presents a motion planning method, based on the Radial Basis Function (RBF neural network, to guide the autonomous vehicle in unstructured environments. The proposed algorithm extracts the drivable region from the perception grid map based on the global path, which is available in the road network. The sample points are randomly selected in the drivable region, and a gradient descent method is used to train the RBF network. The parameters of the motion-planning algorithm are verified through the simulation and experiment. It is observed that the proposed approach produces a flexible, smooth, and safe path that can fit any road shape. The method is implemented on autonomous vehicle and verified against many outdoor scenes; furthermore, a comparison of proposed method with the existing well-known Rapidly-exploring Random Tree (RRT method is presented. The experimental results show that the proposed method is highly effective in planning the vehicle path and offers better motion quality.
Yan, Qin; Zhong, Yanfei
2008-12-01
The radial basis function (RBF) neural network is a powerful method for remote sensing image classification. It has a simple architecture and the learning algorithm corresponds to the solution of a linear regression problem, resulting in a fast training process. The main drawback of this strategy is the requirement of an efficient algorithm to determine the number, position, and dispersion of the RBF. Traditional methods to determine the centers are: randomly choose input vectors from the training data set; vectors obtained from unsupervised clustering algorithms, such as k-means, applied to the input data. These conduce that traditional RBF neural network is sensitive to the center initialization. In this paper, the artificial immune network (aiNet) model, a new computational intelligence based on artificial immune networks (AIN), is applied to obtain appropriate centers for remote sensing image classification. In the aiNet-RBF algorihtm, each input pattern corresonds to an antigenic stimulus, while each RBF candidate center is considered to be an element, or cell, of the immune network model. The steps are as follows: A set of candidate centers is initialized at random, where the initial number of candidates and their positions is not crucial to the performance. Then, the clonal selection principle will control which candidates will be selected and how they will be upadated. Note that the clonal selection principle will be responsible for how the centers will represent the training data set. Finally, the immune network will identify and eliminate or suppress self-recognizing individuals to control the number of candidate centers. After the above learning phase, the aiNet network centers represent internal images of the inuput patterns presented to it. The algorithm output is taken to be the matrix of memory cells' coordinates that represent the final centers to be adopted by the RBF network. The stopping criterion of the proposed algorithm is given by a pre
Radial Basis Function Neural Networks Based QSPR for the Prediction of log P
Institute of Scientific and Technical Information of China (English)
YAO,Xiao-Jun(姚小军); LIU,Man-Cang(刘满仓); ZHANG,Xiao-Yun(张晓昀); ZHANG,Rui-Sheng(张瑞生); HU,Zhi-De(胡之德); FAN,Bo-Tao(范波涛)
2002-01-01
Quantitative structure-property relatioonship (QSPR) method is used to study the correlation models between the structures of a set of diverse organic compounds and their log P. Molecular descriptors calculated from structure alone are used to describe the molecular structures. A subset of the calculated descriptors, selected using forward stepwise regression, is used in the QSPR models development. Multiple linear regression (MLR)and radial basis function neural networks (RBFNNs) are urilized to construct the linear and non-linear correlation model,respectively. The optimal QSPR model developedis based on a 7-17-1 RBFNNs architecture using seven calculated molecular descriptors. The root mean square errorsin predictions for the training, predicting and overall data sets are 0.284, 0.327 and 0.291 log P units, respectively.
Radial Basis Function Neural Networks Based QSPR for the Prediction of log P
Institute of Scientific and Technical Information of China (English)
姚小军; 范波涛; 等
2002-01-01
Quantitative structure-property relationship(QSPR) method is used to study the correlation models between the structures of a set of diverse organic compounds and their log P.Molecular descriptors calculated from strucure alone are used to describe the molecular structures.A subset of the calcualted descriptors,selected using forward stepwise regression,is used in the QSPR models development.Multiple linear regression (MLR) and radial basis function neural networks (RBFNNs) are utilied to construct the linear and non-linear correlation model,respectively,The optimal QSPR model developed is based on a 7-17-1 RBFNNs architecture using sever calculated molecular descriptors .The root mean square errors in predictions for the training,predicting and overall data sets are 0.284,0.327 and 0.291 log P units respectively.
Ryu, Duchwan
2013-03-01
The sea surface temperature (SST) is an important factor of the earth climate system. A deep understanding of SST is essential for climate monitoring and prediction. In general, SST follows a nonlinear pattern in both time and location and can be modeled by a dynamic system which changes with time and location. In this article, we propose a radial basis function network-based dynamic model which is able to catch the nonlinearity of the data and propose to use the dynamically weighted particle filter to estimate the parameters of the dynamic model. We analyze the SST observed in the Caribbean Islands area after a hurricane using the proposed dynamic model. Comparing to the traditional grid-based approach that requires a supercomputer due to its high computational demand, our approach requires much less CPU time and makes real-time forecasting of SST doable on a personal computer. Supplementary materials for this article are available online. © 2013 American Statistical Association.
Energy Technology Data Exchange (ETDEWEB)
Hancock, M.F. Jr. [Rollins College, Winter Park, FL (United States)
1995-12-31
The National Council on Compensation Insurance (NCCI) maintains a national data base of outcomes of workers` compensation claims. We consider whether a radial basis function network can predict the total dollar value of a claim based upon medical and demographic indicators (MDI`s). This work used data from 12,130 workers` compensation claims collected over a period of four years from the state of New Mexico. Two problems were addressed: (1) How well can the total incurred medical expense for all claims be predicted from available MDI`s? For individual claims? (2) How well can the duration of disability be predicted from available MDI`s? The available features intuitively correlated with total medical cost were selected, including type of injury, part of body injured, person`s age at time of injury, gender, marital status, etc. These features were statistically standardized and sorted by correlation with outcome valuation. Principal component analysis was applied. A radial basis function neural network was applied to the feature sets in both supervised and unsupervised training modes. For sets used in training, individual case valuations could consistently be predicted to within $1000 over 98% of the time. For these sets, it was possible to predict total medical expense for the training sets themselves to within 10%. When applied as blind tests against sets which were NOT part of the training data, the prediction was within 15% on the whole sets. Results on individual cases were very poor in only 30% of the cases were the predictions for the training sets within $1000 of their actual valuations. Single-factor analysis suggested that the presence of an attorney strongly decorrelated the data. A simple stratification was performed to remove cases involving attorneys and contested claims, and the procedures above repeated. Preliminary results based upon the very limited effort applied indicate that NCCI data support population estimates, but not single-point estimates.
Near and long-term load prediction using radial basis function networks
Energy Technology Data Exchange (ETDEWEB)
Hancock, M.F. [Rollins College, Winter Park, FL (United States)
1995-12-31
A number of researchers have investigated the application of multi-layer perceptrons (MLP`s), a variety of neural network, to the problem of short-term load forecasting for electric utilities (e.g., Rahman & Hazin, IEEE Trans. Power Systems, May 1993). {open_quotes}Short-term{close_quotes} in this context typically means {open_quotes}next day{close_quotes}. These forecasts have been based upon previous day actual loads and meteorological factors (e.g., max-min temperature, relative humidity). We describe the application of radial basis function networks (RBF`s) to the {open_quotes}long-term{close_quotes} (next year) load forecasting problem. The RBF network performs a two-stage classification based upon annual average loads and meteorological data. During stage 1, discrete classification is performed using radius-limited elements. During stage 2, a multi-layer perceptron may be applied. The quantized output is used to correct a prediction template. The stage 1 classifier is trained by maximizing an objective function (the {open_quotes}disambiguity{close_quotes}). The stage 2 MLP`s are trained by standard back-propagation. This work uses 12 months of hourly meteorological data, and the corresponding hourly load data for both commercial and residential feeders. At the current stage of development, the RBF machine can train on 20% of the weather/load data (selected by simple linear sampling), and estimate the hourly load for an entire year (8,760 data points) with 9.1% error (RMS, relative to daily peak load). (By comparison, monthly mean profiles perform at c. 12% error.) The best short-term load forecasters operate in the 2% error range. The current system is an engineering prototype, and development is continuing.
Ensembles of radial basis function networks for spectroscopic detection of cervical precancer
Tumer, K.; Ramanujam, N.; Ghosh, J.; Richards-Kortum, R.
1998-01-01
The mortality related to cervical cancer can be substantially reduced through early detection and treatment. However, current detection techniques, such as Pap smear and colposcopy, fail to achieve a concurrently high sensitivity and specificity. In vivo fluorescence spectroscopy is a technique which quickly, noninvasively and quantitatively probes the biochemical and morphological changes that occur in precancerous tissue. A multivariate statistical algorithm was used to extract clinically useful information from tissue spectra acquired from 361 cervical sites from 95 patients at 337-, 380-, and 460-nm excitation wavelengths. The multivariate statistical analysis was also employed to reduce the number of fluorescence excitation-emission wavelength pairs required to discriminate healthy tissue samples from precancerous tissue samples. The use of connectionist methods such as multilayered perceptrons, radial basis function (RBF) networks, and ensembles of such networks was investigated. RBF ensemble algorithms based on fluorescence spectra potentially provide automated and near real-time implementation of precancer detection in the hands of nonexperts. The results are more reliable, direct, and accurate than those achieved by either human experts or multivariate statistical algorithms.
Analysis of CT Brain Images using Radial Basis Function Neural Network
Directory of Open Access Journals (Sweden)
T. Joshva Devadas
2012-07-01
Full Text Available Medical image processing and analysis is the tool to assist radiologists in the diagnosis process to obtain a more accurate and faster diagnosis. In this work, we have developed a neural network to classify the computer tomography (CT brain tumor image for automatic diagnosis. This system is divided into four steps namely enhancement, segmentation, feature extraction and classification. In the first phase, an edge-based selective median filter is used to improve the visibility of the loss of the gray-white matter interface in CT brain tumor images. Second phase uses a modified version of shift genetic algorithm for the segmentation. Next phase extracts the textural features using statistical texture analysis method. These features are fed into classifiers like BPN, Fuzzy k-NN, and radial basis function network. The performances of these classifiers are analyzed in the final phase with receiver operating characteristic and precision-recall curve. The result shows that the CAD system is only to develop the tool for brain tumor and proposed method is very accurate and computationally more efficient and less time consuming.
Yoo, Sung-Hoon; Oh, Sung-Kwun; Pedrycz, Witold
2015-09-01
In this study, we propose a hybrid method of face recognition by using face region information extracted from the detected face region. In the preprocessing part, we develop a hybrid approach based on the Active Shape Model (ASM) and the Principal Component Analysis (PCA) algorithm. At this step, we use a CCD (Charge Coupled Device) camera to acquire a facial image by using AdaBoost and then Histogram Equalization (HE) is employed to improve the quality of the image. ASM extracts the face contour and image shape to produce a personal profile. Then we use a PCA method to reduce dimensionality of face images. In the recognition part, we consider the improved Radial Basis Function Neural Networks (RBF NNs) to identify a unique pattern associated with each person. The proposed RBF NN architecture consists of three functional modules realizing the condition phase, the conclusion phase, and the inference phase completed with the help of fuzzy rules coming in the standard 'if-then' format. In the formation of the condition part of the fuzzy rules, the input space is partitioned with the use of Fuzzy C-Means (FCM) clustering. In the conclusion part of the fuzzy rules, the connections (weights) of the RBF NNs are represented by four kinds of polynomials such as constant, linear, quadratic, and reduced quadratic. The values of the coefficients are determined by running a gradient descent method. The output of the RBF NNs model is obtained by running a fuzzy inference method. The essential design parameters of the network (including learning rate, momentum coefficient and fuzzification coefficient used by the FCM) are optimized by means of Differential Evolution (DE). The proposed P-RBF NNs (Polynomial based RBF NNs) are applied to facial recognition and its performance is quantified from the viewpoint of the output performance and recognition rate. PMID:26163042
[Automated recognition of quasars based on adaptive radial basis function neural networks].
Zhao, Mei-Fang; Luo, A-Li; Wu, Fu-Chao; Hu, Zhan-Yi
2006-02-01
Recognizing and certifying quasars through the research on spectra is an important method in the field of astronomy. This paper presents a novel adaptive method for the automated recognition of quasars based on the radial basis function neural networks (RBFN). The proposed method is composed of the following three parts: (1) The feature space is reduced by the PCA (the principal component analysis) on the normalized input spectra; (2) An adaptive RBFN is constructed and trained in this reduced space. At first, the K-means clustering is used for the initialization, then based on the sum of squares errors and a gradient descent optimization technique, the number of neurons in the hidden layer is adaptively increased to improve the recognition performance; (3) The quasar spectra recognition is effectively carried out by the above trained RBFN. The author's proposed adaptive RBFN is shown to be able to not only overcome the difficulty of selecting the number of neurons in hidden layer of the traditional RBFN algorithm, but also increase the stability and accuracy of recognition of quasars. Besides, the proposed method is particularly useful for automatic voluminous spectra processing produced from a large-scale sky survey project, such as our LAMOST, due to its efficiency. PMID:16826929
RADIAL BASIS FUNCTION NETWORK DEPENDENT EXCLUSIVE MUTUAL INTERPOLATION FOR MISSING VALUE IMPUTATION
Directory of Open Access Journals (Sweden)
R. S. Somasundaram
2013-01-01
Full Text Available The success of data mining relies on the purity of the data set. Before performing the data mining, the data has to be cleaned. An unprocessed data set may contain noisy or missing values which is a critical research issue in the pre-processing stage. Imputation methods are being used to solve the missing value problems. In this proposed work, a machine learning based imputation method is proposed by using the mutual information by exclusively interpolating two different section of the same dataset. For designing the proposed model, a radial basis function based neural network has been used. The performance of the proposed algorithm has been measured with respect to different rate or percentage of missing values in the data set and the results has been compared with existing simple and efficient imputation methods also. To evaluate the performance, the standard WDBC data set has been used. The proposed algorithm performs well and was able to impute the missing values even in the worst cases with more than 50% of missing values. Instead of using simple quality measure such as Mean Square Error (MSE to evaluate the imputed data quality, in this study, the quality is measured in terms of classification performance. The results arrived were more significant and comparable.
The Application of Direction Basis Function Neural Networks to the Prediction of Chaotic Time Series
Institute of Scientific and Technical Information of China (English)
CAOWenming
2004-01-01
In this paper we have examined the ability of Direction basis function networks (DBFN) to predict the output of a chaotic time series generated from a model of a physical system. DBFNs are known to be universal approximators, and chaotic systems are known to exhibit “random” behavior. Therefore the challenge is to apply the DBFN to the prediction of the output of a chaotic system, which we have chosen here to be the Mackey-Glass delay differential equation. The DBFN has been trained with off-line supervised learning using a Recursive Least Squares optimization for obtaining weights. Key issues which are addressed are the estimation of the order of the system and dependence of prediction error on various factors such as placement of DBF centers, selection of perceptive widths, and number of training samples. Included in this study is an implementation of Moody and Darken's K Means Clustering approach to optimally place DBF centers and a heuristic nearest neighbor method for determining perceptive widths.
Jingwen Tian; Meijuan Gao; Yonggang He
2013-01-01
Since the control system of the welding gun pose in whole‐position welding is complicated and nonlinear, an intelligent control system of welding gun pose for a pipeline welding robot based on an improved radial basis function neural network (IRBFNN) and expert system (ES) is presented in this paper. The structure of the IRBFNN is constructed and the improved genetic algorithm is adopted to optimize the network structure. This control system makes full use of the characteristics of the IRBFNN...
DEFF Research Database (Denmark)
Lee, Kyo-Beum; Blaabjerg, Frede
estimate the motor inertia value, the observer using the Radial Basis Function Network (RBFN) is applied. A control law for stabilizing the system and adaptive laws for updating both of the weights in the RBFN and a bounding constant are established so that the whole closed-loop system is stable in the...
Directory of Open Access Journals (Sweden)
Tzong-Yi Lee
Full Text Available Ubiquitin (Ub is a small protein that consists of 76 amino acids about 8.5 kDa. In ubiquitin conjugation, the ubiquitin is majorly conjugated on the lysine residue of protein by Ub-ligating (E3 enzymes. Three major enzymes participate in ubiquitin conjugation. They are E1, E2 and E3 which are responsible for activating, conjugating and ligating ubiquitin, respectively. Ubiquitin conjugation in eukaryotes is an important mechanism of the proteasome-mediated degradation of a protein and regulating the activity of transcription factors. Motivated by the importance of ubiquitin conjugation in biological processes, this investigation develops a method, UbSite, which uses utilizes an efficient radial basis function (RBF network to identify protein ubiquitin conjugation (ubiquitylation sites. This work not only investigates the amino acid composition but also the structural characteristics, physicochemical properties, and evolutionary information of amino acids around ubiquitylation (Ub sites. With reference to the pathway of ubiquitin conjugation, the substrate sites for E3 recognition, which are distant from ubiquitylation sites, are investigated. The measurement of F-score in a large window size (-20∼+20 revealed a statistically significant amino acid composition and position-specific scoring matrix (evolutionary information, which are mainly located distant from Ub sites. The distant information can be used effectively to differentiate Ub sites from non-Ub sites. As determined by five-fold cross-validation, the model that was trained using the combination of amino acid composition and evolutionary information performs best in identifying ubiquitin conjugation sites. The prediction sensitivity, specificity, and accuracy are 65.5%, 74.8%, and 74.5%, respectively. Although the amino acid sequences around the ubiquitin conjugation sites do not contain conserved motifs, the cross-validation result indicates that the integration of distant sequence
Directory of Open Access Journals (Sweden)
Shuhuan Wen
2012-01-01
Full Text Available This paper works on hybrid force/position control in robotic manipulation and proposes an improved radial basis functional (RBF neural network, which is a robust relying on the Hamilton Jacobi Issacs principle of the force control loop. The method compensates uncertainties in a robot system by using the property of RBF neural network. The error approximation of neural network is regarded as an external interference of the system, and it is eliminated by the robust control method. Since the conventionally fixed structure of RBF network is not optimal, resource allocating network (RAN is proposed in this paper to adjust the network structure in time and avoid the underfit. Finally the advantage of system stability and transient performance is demonstrated by the numerical simulations.
Shahbaz A. Siddiqui; Kusum Verma; K. R. Niazi; Manoj Fozdar
2014-01-01
On-line Transient Stability Assessment (TSA) is challenging task due to the large number of variables involved and continuously varying operating conditions. This study proposes an on-line transient stability assessment methodology based on the predicted values of generator rotor angles under varying operating conditions for predefined contingency set through Radial Basis Function Neural Network (RBFNN). The real and reactive power loads are taken as input features for training of the neural ...
Analysis of CT Brain Images using Radial Basis Function Neural Network
Directory of Open Access Journals (Sweden)
T. Joshva Devadas
2012-07-01
Full Text Available Medical image processing and analysis is the tool to assist radiologists in the diagnosis process to obtain a moreaccurate and faster diagnosis. In this work, we have developed a neural network to classify the computer tomography(CT brain tumor image for automatic diagnosis. This system is divided into four steps namely enhancement, segmentation, feature extraction and classification. In the first phase, an edge-based selective median filter is usedto improve the visibility of the loss of the gray-white matter interface in CT brain tumor images. Second phaseuses a modified version of shift genetic algorithm for the segmentation. Next phase extracts the textural featuresusing statistical texture analysis method. These features are fed into classifiers like BPN, Fuzzy k-NN, and radialbasis function network. The performances of these classifiers are analyzed in the final phase with receiver operating characteristic and precision-recall curve. The result shows that the CAD system is only to develop the tool for braintumor and proposed method is very accurate and computationally more efficient and less time consuming.Defence Science Journal, 2012, 62(4, pp.212-218, DOI:http://dx.doi.org/10.14429/dsj.62.1830
Oh, Sung-Kwun; Kim, Wook-Dong; Pedrycz, Witold
2016-05-01
In this paper, we introduce a new architecture of optimized Radial Basis Function neural network classifier developed with the aid of fuzzy clustering and data preprocessing techniques and discuss its comprehensive design methodology. In the preprocessing part, the Linear Discriminant Analysis (LDA) or Principal Component Analysis (PCA) algorithm forms a front end of the network. The transformed data produced here are used as the inputs of the network. In the premise part, the Fuzzy C-Means (FCM) algorithm determines the receptive field associated with the condition part of the rules. The connection weights of the classifier are of functional nature and come as polynomial functions forming the consequent part. The Particle Swarm Optimization algorithm optimizes a number of essential parameters needed to improve the accuracy of the classifier. Those optimized parameters include the type of data preprocessing, the dimensionality of the feature vectors produced by the LDA (or PCA), the number of clusters (rules), the fuzzification coefficient used in the FCM algorithm and the orders of the polynomials of networks. The performance of the proposed classifier is reported for several benchmarking data-sets and is compared with the performance of other classifiers reported in the previous studies.
Directory of Open Access Journals (Sweden)
Shahbaz A. Siddiqui
2014-10-01
Full Text Available On-line Transient Stability Assessment (TSA is challenging task due to the large number of variables involved and continuously varying operating conditions. This study proposes an on-line transient stability assessment methodology based on the predicted values of generator rotor angles under varying operating conditions for predefined contingency set through Radial Basis Function Neural Network (RBFNN. The real and reactive power loads are taken as input features for training of the neural network. Principal Component Analysis (PCA is used for dimensionality reduction of the input data set to select informative features. The proposed method is tested on IEEE-39 bus test system and the results obtained for transient stability assessment through predicted rotor angles are promising.
Mary Opokua Ansong; Hong-Xing Yao; Jun Steed Huang
2013-01-01
The performance of a proposed compact radial basis function was compared with the sigmoid basis function and the gaussian-radial basis function neural networks in 3D wireless sensor routing topology control, in underground mine rescue operation. Optimised errors among other parameters were examined in addition to scalability and time efficiency. To make the routing path efficient in emergency situations, the sensor sequence and deployment as well as transmission range were carefully considere...
International Nuclear Information System (INIS)
Critical heat flux (CHF) is an important parameter for the design of nuclear reactors. Although many experimental and theoretical researches have been performed, there is not a single correlation to predict CHF because it is influenced by many parameters. These parameters are based on fixed inlet, local and fixed outlet conditions. Artificial neural networks (ANNs) have been applied to a wide variety of different areas such as prediction, approximation, modeling and classification. In this study, two types of neural networks, radial basis function (RBF) and multilayer perceptron (MLP), are trained with the experimental CHF data and their performances are compared. RBF predicts CHF with root mean square (RMS) errors of 0.24%, 7.9%, 0.16% and MLP predicts CHF with RMS errors of 1.29%, 8.31% and 2.71%, in fixed inlet conditions, local conditions and fixed outlet conditions, respectively. The results show that neural networks with RBF structure have superior performance in CHF data prediction over MLP neural networks. The parametric trends of CHF obtained by the trained ANNs are also evaluated and results reported
An on-line training radial basis function neural network for optimum operation of the UPFC
Farrag, Mohamed; Putrus, Ghanim
2011-01-01
The concept of Flexible A.C. Transmission Systems (FACTS) technology was developed to enhance the performance of electric power networks (both in steady-state and transient-state) and to make better utilization of existing power transmission facilities. The continuous improvement in power ratings and switching performance of power electronic devices together with advances in circuit design and control techniques are making this concept and devices employed in FACTS more commercially attractiv...
Institute of Scientific and Technical Information of China (English)
Lei Wang; Cheng Shao; Hai Wang; Hong Wu
2006-01-01
Membrane technology has found wide applications in the petrochemical industry, mainly in the purification and recovery of the hydrogen resources. Accurate prediction of the membrane separation performance plays an important role in carrying out advanced process control (APC). For the first time, a soft-sensor model for the membrane separation process has been established based on the radial basis function (RBF) neural networks. The main performance parameters, i.e, permeate hydrogen concentration, permeate gas flux, and residue hydrogen concentration, are estimated quantitatively by measuring the operating temperature, feed-side pressure, permeate-side pressure, residue-side pressure, feed-gas flux, and feed-hydrogen concentration excluding flow structure, membrane parameters, and other compositions. The predicted results can gain the desired effects. The effectiveness of this novel approach lays a foundation for integrating control technology and optimizing the operation of the gas membrane separation process.
Meng, Qinggang; Lee, M. H.
2007-03-01
Advanced autonomous artificial systems will need incremental learning and adaptive abilities similar to those seen in humans. Knowledge from biology, psychology and neuroscience is now inspiring new approaches for systems that have sensory-motor capabilities and operate in complex environments. Eye/hand coordination is an important cross-modal cognitive function, and is also typical of many of the other coordinations that must be involved in the control and operation of embodied intelligent systems. This paper examines a biologically inspired approach for incrementally constructing compact mapping networks for eye/hand coordination. We present a simplified node-decoupled extended Kalman filter for radial basis function networks, and compare this with other learning algorithms. An experimental system consisting of a robot arm and a pan-and-tilt head with a colour camera is used to produce results and test the algorithms in this paper. We also present three approaches for adapting to structural changes during eye/hand coordination tasks, and the robustness of the algorithms under noise are investigated. The learning and adaptation approaches in this paper have similarities with current ideas about neural growth in the brains of humans and animals during tool-use, and infants during early cognitive development.
Directory of Open Access Journals (Sweden)
Seerat Fatima
2011-10-01
Full Text Available The purpose of this study is to classify the networks according to functions they performed, especially scrutinize their structures. The research concentrates on the influence of these functional networks on the internationalization process of small and medium sized companies (SME in developing countries. What are the different types of support being provided by network partners? What is the structure of the existing network? The research part is inductive, qualitative and based on case study. The study’s findings illustrate the subtleties of how various network partners interact with entrepreneurs to penetrate, integrate and extend their international markets. Networks can help entrepreneurs expose themselves to new opportunities, obtain knowledge, learn from experiences, and benefit from the synergistic effect of pooled resources. Another contribution of this paper is that it identifies structures of the functional networks, till date networks are classified on the basis of extent of support they provide, not on what support they provide, thus advancing the literature.
Meghabghab, George
2001-01-01
Discusses the evaluation of search engines and uses neural networks in stochastic simulation of the number of rejected Web pages per search query. Topics include the iterative radial basis functions (RBF) neural network; precision; response time; coverage; Boolean logic; regression models; crawling algorithms; and implications for search engine…
Rai, H. M.; Trivedi, A.; Chatterjee, K.; Shukla, S.
2014-01-01
This paper employed the Daubechies wavelet transform (WT) for R-peak detection and radial basis function neural network (RBFNN) to classify the electrocardiogram (ECG) signals. Five types of ECG beats: normal beat, paced beat, left bundle branch block (LBBB) beat, right bundle branch block (RBBB) beat and premature ventricular contraction (PVC) were classified. 500 QRS complexes were arbitrarily extracted from 26 records in Massachusetts Institute of Technology-Beth Israel Hospital (MIT-BIH) arrhythmia database, which are available on Physionet website. Each and every QRS complex was represented by 21 points from p1 to p21 and these QRS complexes of each record were categorized according to types of beats. The system performance was computed using four types of parameter evaluation metrics: sensitivity, positive predictivity, specificity and classification error rate. The experimental result shows that the average values of sensitivity, positive predictivity, specificity and classification error rate are 99.8%, 99.60%, 99.90% and 0.12%, respectively with RBFNN classifier. The overall accuracy achieved for back propagation neural network (BPNN), multilayered perceptron (MLP), support vector machine (SVM) and RBFNN classifiers are 97.2%, 98.8%, 99% and 99.6%, respectively. The accuracy levels and processing time of RBFNN is higher than or comparable with BPNN, MLP and SVM classifiers.
Directory of Open Access Journals (Sweden)
Jingwen Tian
2013-02-01
Full Text Available Since the control system of the welding gun pose in whole‐position welding is complicated and nonlinear, an intelligent control system of welding gun pose for a pipeline welding robot based on an improved radial basis function neural network (IRBFNN and expert system (ES is presented in this paper. The structure of the IRBFNN is constructed and the improved genetic algorithm is adopted to optimize the network structure. This control system makes full use of the characteristics of the IRBFNN and the ES. The ADXRS300 micro‐mechanical gyro is used as the welding gun position sensor in this system. When the welding gun position is obtained, an appropriate pitch angle can be obtained through expert knowledge and the numeric reasoning capacity of the IRBFNN. ARM is used as the controller to drive the welding gun pitch angle step motor in order to adjust the pitch angle of the welding gun in real‐time. The experiment results show that the intelligent control system of the welding gun pose using the IRBFNN and expert system is feasible and it enhances the welding quality. This system has wide prospects for application.
Anitha, J.; Vijila, C. Kezi Selva; Hemanth, D. Jude
2010-02-01
Diabetic retinopathy (DR) is a chronic eye disease for which early detection is highly essential to avoid any fatal results. Image processing of retinal images emerge as a feasible tool for this early diagnosis. Digital image processing techniques involve image classification which is a significant technique to detect the abnormality in the eye. Various automated classification systems have been developed in the recent years but most of them lack high classification accuracy. Artificial neural networks are the widely preferred artificial intelligence technique since it yields superior results in terms of classification accuracy. In this work, Radial Basis function (RBF) neural network based bi-level classification system is proposed to differentiate abnormal DR Images and normal retinal images. The results are analyzed in terms of classification accuracy, sensitivity and specificity. A comparative analysis is performed with the results of the probabilistic classifier namely Bayesian classifier to show the superior nature of neural classifier. Experimental results show promising results for the neural classifier in terms of the performance measures.
Yang, Yanchao; Jiang, Hong; Liu, Congbin; Lan, Zhongli
2013-03-01
Cognitive radio (CR) is an intelligent wireless communication system which can dynamically adjust the parameters to improve system performance depending on the environmental change and quality of service. The core technology for CR is the design of cognitive engine, which introduces reasoning and learning methods in the field of artificial intelligence, to achieve the perception, adaptation and learning capability. Considering the dynamical wireless environment and demands, this paper proposes a design of cognitive engine based on the rough sets (RS) and radial basis function neural network (RBF_NN). The method uses experienced knowledge and environment information processed by RS module to train the RBF_NN, and then the learning model is used to reconfigure communication parameters to allocate resources rationally and improve system performance. After training learning model, the performance is evaluated according to two benchmark functions. The simulation results demonstrate the effectiveness of the model and the proposed cognitive engine can effectively achieve the goal of learning and reconfiguration in cognitive radio.
Ebtehaj, Isa; Bonakdari, Hossein; Zaji, Amir Hossein
2016-01-01
In this study, an expert system with a radial basis function neural network (RBF-NN) based on decision trees (DT) is designed to predict sediment transport in sewer pipes at the limit of deposition. First, sensitivity analysis is carried out to investigate the effect of each parameter on predicting the densimetric Froude number (Fr). The results indicate that utilizing the ratio of the median particle diameter to pipe diameter (d/D), ratio of median particle diameter to hydraulic radius (d/R) and volumetric sediment concentration (C(V)) as the input combination leads to the best Fr prediction. Subsequently, the new hybrid DT-RBF method is presented. The results of DT-RBF are compared with RBF and RBF-particle swarm optimization (PSO), which uses PSO for RBF training. It appears that DT-RBF is more accurate (R(2) = 0.934, MARE = 0.103, RMSE = 0.527, SI = 0.13, BIAS = -0.071) than the two other RBF methods. Moreover, the proposed DT-RBF model offers explicit expressions for use by practicing engineers. PMID:27386995
Ai, Yuewei; Shao, Xinyu; Jiang, Ping; Li, Peigen; Liu, Yang; Yue, Chen
2015-11-01
The welded joints of dissimilar materials have been widely used in automotive, ship and space industries. The joint quality is often evaluated by weld seam geometry, microstructures and mechanical properties. To obtain the desired weld seam geometry and improve the quality of welded joints, this paper proposes a process modeling and parameter optimization method to obtain the weld seam with minimum width and desired depth of penetration for laser butt welding of dissimilar materials. During the process, Taguchi experiments are conducted on the laser welding of the low carbon steel (Q235) and stainless steel (SUS301L-HT). The experimental results are used to develop the radial basis function neural network model, and the process parameters are optimized by genetic algorithm. The proposed method is validated by a confirmation experiment. Simultaneously, the microstructures and mechanical properties of the weld seam generated from optimal process parameters are further studied by optical microscopy and tensile strength test. Compared with the unoptimized weld seam, the welding defects are eliminated in the optimized weld seam and the mechanical properties are improved. The results show that the proposed method is effective and reliable for improving the quality of welded joints in practical production.
2014-01-01
This paper proposed a novel radial basis function (RBF) neural network model optimized by exponential decreasing inertia weight particle swarm optimization (EDIW-PSO). Based on the inertia weight decreasing strategy, we propose a new Exponential Decreasing Inertia Weight (EDIW) to improve the PSO algorithm. We use the modified EDIW-PSO algorithm to determine the centers, widths, and connection weights of RBF neural network. To assess the performance of the proposed EDIW-PSO-RBF model, we choo...
International Nuclear Information System (INIS)
A self-organized Radial Basis Function Network (RBFN) is proposed for the problem of object extraction in Positron Emission Tomography Images of the heart. RBENs are supervised-learning networks. However, viewing the output of the networks as a fuzzy set, we have able to compute the error of the system using fuzziness measures. Thus, there is no need of target output for training the network. Besides the self-organizing feature of the network, our RBFN has a non linear output layer trained using the back-propagation algorithm. Two mathematical models of fuzzy measures have been considered: the index of fuzziness and fuzzy entropy. Preliminary results show that entropy measure produced a better extraction of healthy myocardium. (authors)
Goudarzi, Shidrokh; Haslina Hassan, Wan; Abdalla Hashim, Aisha-Hassan; Soleymani, Seyed Ahmad; Anisi, Mohammad Hossein; Zakaria, Omar M.
2016-01-01
This study aims to design a vertical handover prediction method to minimize unnecessary handovers for a mobile node (MN) during the vertical handover process. This relies on a novel method for the prediction of a received signal strength indicator (RSSI) referred to as IRBF-FFA, which is designed by utilizing the imperialist competition algorithm (ICA) to train the radial basis function (RBF), and by hybridizing with the firefly algorithm (FFA) to predict the optimal solution. The prediction accuracy of the proposed IRBF–FFA model was validated by comparing it to support vector machines (SVMs) and multilayer perceptron (MLP) models. In order to assess the model’s performance, we measured the coefficient of determination (R2), correlation coefficient (r), root mean square error (RMSE) and mean absolute percentage error (MAPE). The achieved results indicate that the IRBF–FFA model provides more precise predictions compared to different ANNs, namely, support vector machines (SVMs) and multilayer perceptron (MLP). The performance of the proposed model is analyzed through simulated and real-time RSSI measurements. The results also suggest that the IRBF–FFA model can be applied as an efficient technique for the accurate prediction of vertical handover. PMID:27438600
Panagou, Efstathios Z
2008-04-01
A radial basis function neural network was developed to determine the kinetic behavior of Listeria monocytogenes in Katiki, a traditional white acid-curd soft spreadable cheese. The applicability of the neural network approach was compared with the reparameterized Gompertz, the modified Weibull, and the Geeraerd primary models. Model performance was assessed with the root mean square error of the residuals of the model (RMSE), the regression coefficient (R2), and the F test. Commercially prepared cheese samples were artificially inoculated with a five-strain cocktail of L. monocytogenes, with an initial concentration of 10(6) CFU g(-1) and stored at 5, 10, 15, and 20 degrees C for 40 days. At each storage temperature, a pathogen viability loss profile was evident and included a shoulder, a log-linear phase, and a tailing phase. The developed neural network described the survival of L. monocytogenes equally well or slightly better than did the three primary models. The performance indices for the training subset of the network were R2 = 0.993 and RMSE = 0.214. The relevant mean values for all storage temperatures were R2 = 0.981, 0.986, and 0.985 and RMSE = 0.344, 0.256, and 0.262 for the reparameterized Gompertz, modified Weibull, and Geeraerd models, respectively. The results of the F test indicated that none of the primary models were able to describe accurately the survival of the pathogen at 5 degrees C, whereas with the neural network all fvalues were significant. The neural network and primary models all were validated under constant temperature storage conditions (12 and 17 degrees C). First or second order polynomial models were used to relate the inactivation parameters to temperature, whereas the neural network was used a one-step modeling approach. Comparison of the prediction capability was based on bias and accuracy factors and on the goodness-of-fit index. The prediction performance of the neural network approach was equal to that of the primary
Indian Academy of Sciences (India)
Izzet Y Önel; K Burak Dalci; İbrahim Senol
2006-06-01
This paper investigates the application of induction motor stator current signature analysis (MCSA) using Park’s transform for the detection of rolling element bearing damages in three-phase induction motor. The paper ﬁrst discusses bearing faults and Park’s transform, and then gives a brief overview of the radial basis function (RBF) neural networks algorithm. Finally, system information and the experimental results are presented. Data acquisition and Park’s transform algorithm are achieved by using LabVIEW and the neural network algorithm is achieved by using MATLAB programming language. Experimental results show that it is possible to detect bearing damage in induction motors using an ANN algorithm.
Directory of Open Access Journals (Sweden)
Shiva Kumar
2012-01-01
Full Text Available Radial basis function neural networks (RBFNNs, which is a relatively new class of neural networks, have been investigated for their applicability for prediction of performance and emission characteristics of a diesel engine fuelled with waste cooking oil (WCO. The RBF networks were trained using the experimental data, where in load percentage, compression ratio, blend percentage, injection timing, and injection pressure were taken as the input parameters, and brake thermal efficiency (BTE, brake specific energy consumption (BSEC, exhaust gas temperature (, and engine emissions were used as the output parameters. The number of RBF centers was selected randomly. The network was initially trained using variable width values for the RBF units using a heuristic and then was trained by using fixed width values. Studies showed that RBFNN predicted results matched well with the experimental results over a wide range of operating conditions. Prediction accuracy for all the output parameters was above 90% in case of performance parameters and above 70% in case of emission parameters.
Seerat Fatima; Prof. Dr. Mujahid Ali; Sheraz Arif
2011-01-01
The purpose of this study is to classify the networks according to functions they performed, especially scrutinize their structures. The research concentrates on the influence of these functional networks on the internationalization process of small and medium sized companies (SME) in developing countries. What are the different types of support being provided by network partners? What is the structure of the existing network? The research part is inductive, qualitative and based on case stud...
Institute of Scientific and Technical Information of China (English)
Li-juan XIE; Xing-qian YE; Dong-hong LIU; Yi-bin YING
2008-01-01
Near-infrared (NIR) spectroscopy combined with chemometrics techniques was used to classify the pure bayberry juice and the one adulterated with 10% (w/w) and 20% (w/w) water. Principal component analysis (PCA) was applied to reduce the dimensions of spectral data, give information regarding a potential capability of separation of objects, and provide principal component (PC) scores for radial basis function neural networks (RBFNN). RBFNN was used to detect bayberry juice adulterant. Multiplicative scatter correction (MSC) and standard normal variate (SNV) transformation were used to preprocess spectra. The results demonstrate that PC-RBFNN with optimum parameters can separate pure bayberry juice samples from water-adulterated bayberry at a recognition rate of 97.62%, but cannot clearly detect water levels in the adulterated bayberry juice. We conclude that NIR technology can be successfully applied to detect water-adulterated bayberry juice.
International Nuclear Information System (INIS)
In this paper, Radial Basis Function network (RBF) is used for modelling and predicting the daily global solar radiation data using other meteorological data such as air temperature, sunshine duration, and relative humidity. These data were recorded in the period 1998-2002 at Al-Madinah (Saudi Arabia) by the National Renewable Energy Laboratory. Four RBF-models have been developed for predicting the daily global solar radiation. It was found that the RBF-model which uses the sunshine duration and air temperature as input parameters, gives accurate results as the correlation coefficient in this case is 98.80%. A comparative study between developed RBF, Multilayer perceptron and conventional regression models are presented and discussed in this paper, In addition, an application for estimating the sizing of a stand-alone PV system at Al-Maidinah is presented in order to show the effectiveness of the developed RBF-model.
Kong, Chunli; Wang, Huiyi; Li, Dapeng; Zhang, Yuemei; Pan, Jinfeng; Zhu, Beiwei; Luo, Yongkang
2016-06-15
To investigate and predict quality of 2% brined common carp (Cyprinus carpio) fillets during frozen storage, free fatty acids (FFA), salt extractable protein (SEP), total sulfhydryl (SH) content, and Ca(2+)-ATPase activity were determined at 261K, 253K, and 245K, respectively. There was a dramatic increase (Pfirst 3weeks. SEP decreased to 67.31% after 17weeks at 245K, whereas it took about 7weeks and 13weeks to decrease to the same extent at 261K and 253K, respectively. Ca(2+)-ATPase activity kept decreasing to 18.28% after 7weeks at 261K. Furthermore, radial basis function neural networks (RBFNNs) were developed to predict quality (FFA, SEP, SH, and Ca(2+)-ATPase activity) of brined carp fillets during frozen storage with relative errors all within ±5%. Thus, RBFNN is a promising method to predict quality of carp fillets during storage at 245-261K. PMID:26868584
International Nuclear Information System (INIS)
Highlights: • It is presented a new method based on Artificial Neural Network (ANN) developed to deal with accident identification in PWR nuclear power plants. • Obtained results have shown the efficiency of the referred technique. • Results obtained with this method are as good as or even better to similar optimization tools available in the literature. - Abstract: The task of monitoring a nuclear power plant consists on determining, continuously and in real time, the state of the plant’s systems in such a way to give indications of abnormalities to the operators and enable them to recognize anomalies in system behavior. The monitoring is based on readings of a large number of meters and alarm indicators which are located in the main control room of the facility. On the occurrence of a transient or of an accident on the nuclear power plant, even the most experienced operators can be confronted with conflicting indications due to the interactions between the various components of the plant systems; since a disturbance of a system can cause disturbances on another plant system, thus the operator may not be able to distinguish what is cause and what is the effect. This cognitive overload, to which operators are submitted, causes a difficulty in understanding clearly the indication of an abnormality in its initial phase of development and in taking the appropriate and immediate corrective actions to face the system failure. With this in mind, computerized monitoring systems based on artificial intelligence that could help the operators to detect and diagnose these failures have been devised and have been the subject of research. Among the techniques that can be used in such development, radial basis functions (RBFs) neural networks play an important role due to the fact that they are able to provide good approximations to functions of a finite number of real variables. This paper aims to present an application of a neural network of Gaussian radial basis
International Nuclear Information System (INIS)
On the assumption that random interruptions in the observation process are modeled by a sequence of independent Bernoulli random variables, we firstly generalize two kinds of nonlinear filtering methods with random interruption failures in the observation based on the extended Kalman filtering (EKF) and the unscented Kalman filtering (UKF), which were shortened as GEKF and GUKF in this paper, respectively. Then the nonlinear filtering model is established by using the radial basis function neural network (RBFNN) prototypes and the network weights as state equation and the output of RBFNN to present the observation equation. Finally, we take the filtering problem under missing observed data as a special case of nonlinear filtering with random intermittent failures by setting each missing data to be zero without needing to pre-estimate the missing data, and use the GEKF-based RBFNN and the GUKF-based RBFNN to predict the ground radioactivity time series with missing data. Experimental results demonstrate that the prediction results of GUKF-based RBFNN accord well with the real ground radioactivity time series while the prediction results of GEKF-based RBFNN are divergent. (geophysics, astronomy, and astrophysics)
Institute of Scientific and Technical Information of China (English)
DU Lin-na; WU Li-hang; LU Jia-hui; GUO Wei-liang; MENG Qing-fan; JIANG Chao-jun; SHEN Si-le; TENG Li-rong
2007-01-01
Partial least squares(PLS), back-propagation neural network (BPNN) and radial basis function neural network(RBFNN) were respectively used for estalishing quantative analysis models with near infrared(NIR) diffuse reflectance spectra for determining the contents of rifampincin(RMP), isoniazid(INH) and pyrazinamide(PZA) in rifampicin isoniazid and pyrazinamide tablets. Savitzky-Golay smoothing, first derivative, second derivative, fast Fourier transform(FFT) and standard normal variate(SNV) transformation methods were applied to pretreating raw NIR diffuse reflectance spectra. The raw and pretreated spectra were divided into several regions, depending on the average spectrum and RSD spectrum. Principal component analysis(PCA) method was used for analyzing the raw and pretreated spectra in different regions in order to reduce the dimensions of input data. The optimum spectral regions and the models' parameters were chosen by comparing the root mean square error of cross-validation(RMSECV) values which were obtained by leave-one-out cross-validation method. The RMSECV values of the RBFNN models for determining the contents of RMP, INH and PZA were 0.00288, 0.00226 and 0.00341, respectively. Using these models for predicting the contents of INH, RMP and PZA in prediction set, the RMSEP values were 0.00266, 0.00227 and 0.00411, respectively. These results are better than those obtained from PLS models and BPNN models. With additional advantages of fast calculation speed and less dependence on the initial conditions, RBFNN is a suitable tool to model complex systems.
Directory of Open Access Journals (Sweden)
Zhiqiang Guo
Full Text Available In this paper, we propose and implement a hybrid model combining two-directional two-dimensional principal component analysis ((2D2PCA and a Radial Basis Function Neural Network (RBFNN to forecast stock market behavior. First, 36 stock market technical variables are selected as the input features, and a sliding window is used to obtain the input data of the model. Next, (2D2PCA is utilized to reduce the dimension of the data and extract its intrinsic features. Finally, an RBFNN accepts the data processed by (2D2PCA to forecast the next day's stock price or movement. The proposed model is used on the Shanghai stock market index, and the experiments show that the model achieves a good level of fitness. The proposed model is then compared with one that uses the traditional dimension reduction method principal component analysis (PCA and independent component analysis (ICA. The empirical results show that the proposed model outperforms the PCA-based model, as well as alternative models based on ICA and on the multilayer perceptron.
Guo, Zhiqiang; Wang, Huaiqing; Yang, Jie; Miller, David J
2015-01-01
In this paper, we propose and implement a hybrid model combining two-directional two-dimensional principal component analysis ((2D)2PCA) and a Radial Basis Function Neural Network (RBFNN) to forecast stock market behavior. First, 36 stock market technical variables are selected as the input features, and a sliding window is used to obtain the input data of the model. Next, (2D)2PCA is utilized to reduce the dimension of the data and extract its intrinsic features. Finally, an RBFNN accepts the data processed by (2D)2PCA to forecast the next day's stock price or movement. The proposed model is used on the Shanghai stock market index, and the experiments show that the model achieves a good level of fitness. The proposed model is then compared with one that uses the traditional dimension reduction method principal component analysis (PCA) and independent component analysis (ICA). The empirical results show that the proposed model outperforms the PCA-based model, as well as alternative models based on ICA and on the multilayer perceptron. PMID:25849483
International Nuclear Information System (INIS)
The on-line estimation of the state of charge (SOC) of the batteries is important for the reliable running of the pure electric vehicle in practice. Because a nonlinear feature exists in the batteries and the radial-basis-function neural network (RBF NN) has good characteristics to solve the nonlinear problem, a practical method for the SOC estimation of batteries based on the RBF NN with a small number of input variables and a simplified structure is proposed. Firstly, in this paper, the model of on-line SOC estimation with the RBF NN is set. Secondly, four important factors for estimating the SOC are confirmed based on the contribution analysis method, which simplifies the input variables of the RBF NN and enhances the real-time performance of estimation. Finally, the pure electric buses with LiFePO4 Li-ion batteries running during the period of the 2010 Shanghai World Expo are considered as the experimental object. The performance of the SOC estimation is validated and evaluated by the battery data from the electric vehicle
International Nuclear Information System (INIS)
Highlights: • Wear tests were conducted on Cu–(5–20%) W nano composite. • SEM, TEM, XRD and EDS were used to evaluate the characteristics of composite. • Wear mechanism was discussed through the distribution map and SEM. • Best trained RBFNN was developed to predict the unknown values. - Abstract: Cu–(5–20%) W composite preforms, with a density of 94% were prepared through mechanical milling, mixing, compaction, sintering and hot extrusion. The X-ray Diffraction analysis, Particle Size analysis, Transmission Electron Microscope, Scanning Electron Microscope and Energy Dispersive Spectrum were used for the characterization studies. The pore size during different sintering atmospheres and the pore size reduction during extrusion, were studied through Auto CAD 2010 software. The wear experiments were conducted using the pin-on-disc wear tester. The various regions in the wear mechanisms were identified through the wear distribution map. The Radial Basis Functional Neural Network has been used in an attempt to predict the mechanical and tribological behavior of composites, and useful conclusions have been made
Hassanzadeh, Zeinabe; Kompany-Zareh, Mohsen; Ghavami, Raouf; Gholami, Somayeh; Malek-Khatabi, Atefe
2015-10-01
The configuring of a radial basis function neural network (RBFN) consists of optimizing the architecture and the network parameters (centers, widths, and weights). Methods such as genetic algorithm (GA), K-means and cluster analysis (CA) are among center selection methods. In the most of reports on RBFN modeling optimum centers are selected among rows of descriptors matrix. A combination of RBFN and GA is introduced for better description of quantitative structure-property relationships (QSPR) models. In this method, centers are not exactly rows of the independent matrix and can be located in any point of the samples space. In the proposed approach, initial centers are randomly selected from the calibration set. Then GA changes the locations of the initially selected centers to find the optimum positions of centers from the whole space of scores matrix, in order to obtain highest prediction ability. This approach is called whole space GA-RBFN (wsGA-RBFN) and applied to predict the adsorption coefficients (logk), of 40 small molecules on the surface of multi-walled carbon nanotubes (MWCNTs). The data consists of five solute descriptors [R, π, α, β, V] of the molecules and known as data set1. Prediction ability of wsGA-RBFN is compared to GA-RBFN and MLR models. The obtained Q2 values for wsGA-RBFN, GA-RBFN and MLR are 0.95, 0.85, and 0.78, respectively, which shows the merit of wsGA-RBFN. The method is also applied on the logarithm of surface area normalized adsorption coefficients (logKSA), of organic compounds (OCs) on MWCNTs surface. The data set2 includes 69 aromatic molecules with 13 physicochemical properties of the OCs. Thirty-nine of these molecules were similar to those of data set1 and the others were aromatic compounds included of small and big molecules. Prediction ability of wsGA-RBFN for second data set was compared to GA-RBF. The Q2 values for wsGA-RBFN and GA-RBF are obtained as 0.89 and 0.80, respectively.
Generalized Network Externality Function
A. Paothong; G.S. Ladde
2012-01-01
In this work, we focus on the development of mathematical modeling of network externality processes. The introduction of the generalized network externality function provides a unified source of a tool for developing and analyzing the planning, policy and performance of the network externality process and network goods/services in a systematic way. This leads to fulfill all existing network externality assumptions as special cases. We study its properties and applications. This study provides...
Dynamic programming using radial basis functions
Junge, Oliver; Schreiber, Alex
2014-01-01
We propose a discretization of the optimality principle in dynamic programming based on radial basis functions and Shepard's moving least squares approximation method. We prove convergence of the approximate optimal value function to the true one and present several numerical experiments.
Analysis of radial basis function interpolation approach
Institute of Scientific and Technical Information of China (English)
Zou You-Long; Hu Fa-Long; Zhou Can-Can; Li Chao-Liu; Dunn Keh-Jim
2013-01-01
The radial basis function (RBF) interpolation approach proposed by Freedman is used to solve inverse problems encountered in well-logging and other petrophysical issues. The approach is to predict petrophysical properties in the laboratory on the basis of physical rock datasets, which include the formation factor, viscosity, permeability, and molecular composition. However, this approach does not consider the effect of spatial distribution of the calibration data on the interpolation result. This study proposes a new RBF interpolation approach based on the Freedman's RBF interpolation approach, by which the unit basis functions are uniformly populated in the space domain. The inverse results of the two approaches are comparatively analyzed by using our datasets. We determine that although the interpolation effects of the two approaches are equivalent, the new approach is more flexible and beneficial for reducing the number of basis functions when the database is large, resulting in simplification of the interpolation function expression. However, the predicted results of the central data are not sufficiently satisfied when the data clusters are far apart.
Bioprinting: Functional droplet networks
Durmus, Naside Gozde; Tasoglu, Savas; Demirci, Utkan
2013-06-01
Tissue-mimicking printed networks of droplets separated by lipid bilayers that can be functionalized with membrane proteins are able to spontaneously fold and transmit electrical currents along predefined paths.
Institute of Scientific and Technical Information of China (English)
陈向东; 唐景山; 宋爱国
2000-01-01
In this paper,an improved radial basis function networks named hidden neuron modifiable radial basis function (IINMRBF) networks is proposed for target classification,and evolutionary programming (EP) is used as a learning algorithm to determine and modify the hidden neuron of HNMRBF nets.The result of passive sonar target classification shows that HNMRBF nets can effectively solve the problem of traditional neural networks,i.e.learning new target patterns on-line will cause forgetting of the old patterns.%本文提出了一种改进的称为隐神经元可调径向基函数神经网络(HNMRBF)，并且应用进化规划算法作为聚类算法来决定和修改HNMRBF网络的隐神经元.最后，我们使用基于进化规划算法的HMRBF网络来进行被动声纳信号目标的分类，结果表明HNMRBF网络能有效地解决用传统神经网络时所遇到的问题，即在线学习新的目标模式时往往会遗忘旧的模式.
Institute of Scientific and Technical Information of China (English)
翟红林; 陈晓峰; 陈兴国; 胡之德
2004-01-01
结合了径向基神经网络较强模式分类能力与概率神经网络运算简单的优点,提出了一种径向基概率神经网络模型,并应用于小儿厌食症的辅助诊断,通过对119例样本数据的处理,获得了92.4%的准确率.此外,偏最小二乘法的分析结果表明,Zn元素与小儿厌食症关系最为紧密.%Based on a radial basis function probabilistic neural network model, which combined the powerful capability of the pattern classification of radial basis function neural network and the simple operation of probabilistic neural network, a new approach of assisted diagnosis for infancy anorexia was developed and applied to 119 samples, with an accuracy rate of 92%. In addition, the result of partial least squares analysis indicated that Zn was the most important element that was closely related to infancy anorexia..
Virtual network functions orchestration in wireless networks
Riggio, Roberto; Bradai, Abbas; Rasheed, Tinku; Schulz-Zander, Julius; Kuklinski, Slawomir; Ahmed, Toufik
2015-01-01
Network Function Virtualization (NFV) is emerging as one of the most innovative concepts in the networking landscape. By migrating network functions from dedicated mid-dleboxes to general purpose computing platforms, NFV can effectively reduce the cost to deploy and to operate large networks. However, in order to achieve its full potential, NFV needs to encompass also the radio access network allowing Mobile Virtual Network Operators to deploy custom resource allocation solutions within their...
The Interpolation Theory of Radial Basis Functions
Baxter, Brad
2010-01-01
In this dissertation, it is first shown that, when the radial basis function is a $p$-norm and $1 2$. Specifically, for every $p > 2$, we construct a set of different points in some $\\Rd$ for which the interpolation matrix is singular. The greater part of this work investigates the sensitivity of radial basis function interpolants to changes in the function values at the interpolation points. Our early results show that it is possible to recast the work of Ball, Narcowich and Ward in the language of distributional Fourier transforms in an elegant way. We then use this language to study the interpolation matrices generated by subsets of regular grids. In particular, we are able to extend the classical theory of Toeplitz operators to calculate sharp bounds on the spectra of such matrices. Applying our understanding of these spectra, we construct preconditioners for the conjugate gradient solution of the interpolation equations. Our main result is that the number of steps required to achieve solution of the lin...
Spherical radial basis functions, theory and applications
Hubbert, Simon; Morton, Tanya M
2015-01-01
This book is the first to be devoted to the theory and applications of spherical (radial) basis functions (SBFs), which is rapidly emerging as one of the most promising techniques for solving problems where approximations are needed on the surface of a sphere. The aim of the book is to provide enough theoretical and practical details for the reader to be able to implement the SBF methods to solve real world problems. The authors stress the close connection between the theory of SBFs and that of the more well-known family of radial basis functions (RBFs), which are well-established tools for solving approximation theory problems on more general domains. The unique solvability of the SBF interpolation method for data fitting problems is established and an in-depth investigation of its accuracy is provided. Two chapters are devoted to partial differential equations (PDEs). One deals with the practical implementation of an SBF-based solution to an elliptic PDE and another which describes an SBF approach for solvi...
Speech Recognition Oriented Vowel Classification Using Temporal Radial Basis Functions
Guezouri, Mustapha; Benyettou, Abdelkader
2009-01-01
The recent resurgence of interest in spatio-temporal neural network as speech recognition tool motivates the present investigation. In this paper an approach was developed based on temporal radial basis function "TRBF" looking to many advantages: few parameters, speed convergence and time invariance. This application aims to identify vowels taken from natural speech samples from the Timit corpus of American speech. We report a recognition accuracy of 98.06 percent in training and 90.13 in test on a subset of 6 vowel phonemes, with the possibility to expend the vowel sets in future.
Using a Mahalanobis-like distance to train Radial Basis Neural Networks
Valls, José M.; Aler, Ricardo; Fernández, Óscar
2005-01-01
Radial Basis Neural Networks (RBNN) can approximate any regular function and have a faster training phase than other similar neural networks. However, the activation of each neuron depends on the euclidean distance between a pattern and the neuron center. Therefore, the activation function is symmetrical and all attributes are considered equally relevant. This could be solved by altering the metric used in the activation function (i.e. using non-symmetrical metrics). The Mahalanobis distance ...
Learning Mixtures of Truncated Basis Functions from Data
DEFF Research Database (Denmark)
Langseth, Helge; Nielsen, Thomas Dyhre; Pérez-Bernabé, Inmaculada;
2014-01-01
significantly faster, and therefore indicate that the MoTBF framework can be used for inference and learning in reasonably sized domains. Furthermore, we show how a particular sub- class of MoTBF potentials (learnable by the proposed methods) can be exploited to significantly reduce complexity during inference.......In this paper we investigate methods for learning hybrid Bayesian networks from data. First we utilize a kernel density estimate of the data in order to translate the data into a mixture of truncated basis functions (MoTBF) representation using a convex optimization technique. When utilizing a...... propose an alternative learning method that relies on the cumulative distribution function of the data. Empirical results demonstrate the usefulness of the approaches: Even though the methods produce estimators that are slightly poorer than the state of the art (in terms of log-likelihood), they are...
Molecular basis of whey protein functionality
Zoran Herceg; Anet Režek; Suzana Rimac Brnčić
2008-01-01
Whey proteins constitute 18-20% of total milk protein content. Their nutritive value, accompanied by diverse physico-chemical and functional properties, make whey proteins widely applicable in food industry. Highly risen demands of consumers for tastier, healthier, suitable and more natural food products have given dairy industry the opportunity for development and enrichment of food products with whey protein supplements in order to increase their functional and nutritive properties. Develop...
Institute of Scientific and Technical Information of China (English)
赵高强; 傅(王乐)
2011-01-01
风速预测对风电场和电力系统的运行都具有重要意义.为了提高风速预测的精度,提出了一种基于量子粒子群-径向基神经网络模型,在确定网络隐含层节点数后,将RBF网络的参数编码成优化算法中的粒子个体进行优化,在全局空间搜索最优适应值的参数.用优化后的神经网络进行风速预测,实例结果表明该算法在预测速度和精度上都得到了提高.%Forecasting of wind speed is very important to the operation of wind power plants and power systems.To improve the wind speed forecasting accuracy, a model based on quantum- behaved particle swarm optimization and radial basis function neural network algorithm is proposed.After the number of nodes in hidden layer is confirmed and all parameters of RBF nets are coded to individual particles to optimize learning algorithm, the parameter of optimal-adaptive values can be searched in global space.Using the optimized neural network to forecast wind speed,and some calculation examples were abtained.The results showed that the new method can improve the speed and accuracy of prediction.
DEFF Research Database (Denmark)
Madsen, Per Printz
1998-01-01
The purpose of this paper is to describe a neural network (SNN), that is based on Shannons ideas of reconstruction of a real continuous function from its samples. The basic function, used in this network, is the Sinc-function. Two learning algorithms are described. A simple one called IM...
DEFF Research Database (Denmark)
Madsen, Per Printz
1999-01-01
The purpose of this paper is to describe a neural network (SNN), that is based on Shannons ideas of reconstruction of a real continuous function from its samples. The basic function, used in this network, is the Sinc-function. Two learning algorithms are described. A simple one called IM...
Chennubhotla Chakra; Wu Chuang; Farkas Illés J; Bahar Ivet; Oltvai Zoltán N
2006-01-01
Abstract Background Signal recognition and information processing is a fundamental cellular function, which in part involves comprehensive transcriptional regulatory (TR) mechanisms carried out in response to complex environmental signals in the context of the cell's own internal state. However, the network topological basis of developing such integrated responses remains poorly understood. Results By studying the TR network of the yeast Saccharomyces cerevisiae we show that an intermediate l...
Institute of Scientific and Technical Information of China (English)
吴洪岩; 刘淑华; 张嵛
2009-01-01
在复杂连续环境下,强化学习系统的状态空间面临维数灾难问题,需要采取量化的方法,降低输入空间的复杂度.径向基神经网络(RBFNN:Radial Basis Function Neural Networks)具有较强的函数逼近能力及泛化能力,由此提出了基于径向基神经网络的Q学习方法,并将其应用于单机器人的自主导航.在基于径向基神经网络的强化学习系统中,用径向基神经网络逼近状态空间和Q函数,使学习系统具有良好的泛化能力.仿真结果表明,该导航方法具有较强的避碰能力,提高了机器人对环境的适应能力.
EEG Source Reconstruction using Sparse Basis Function Representations
DEFF Research Database (Denmark)
Hansen, Sofie Therese; Hansen, Lars Kai
2014-01-01
State of the art performance of 3D EEG imaging is based on reconstruction using spatial basis function representations. In this work we augment the Variational Garrote (VG) approach for sparse approximation to incorporate spatial basis functions. As VG handles the bias variance trade-off with cross...
Kauffman networks with threshold functions
Greil, Florian; Drossel, Barbara
2007-01-01
We investigate Threshold Random Boolean Networks with $K = 2$ inputs per node, which are equivalent to Kauffman networks, with only part of the canalyzing functions as update functions. According to the simplest consideration these networks should be critical but it turns out that they show a rich variety of behaviors, including periodic and chaotic oscillations. The results are supported by analytical calculations and computer simulations.
A Discrete Adapted Hierarchical Basis Solver For Radial Basis Function Interpolation
Castrillon-Candas, Julio Enrique; Eijkhout, Victor
2011-01-01
In this paper we develop a discrete Hierarchical Basis (HB) to efficiently solve the Radial Basis Function (RBF) interpolation problem with variable polynomial order. The HB forms an orthogonal set and is adapted to the kernel seed function and the placement of the interpolation nodes. Moreover, this basis is orthogonal to a set of polynomials up to a given order defined on the interpolating nodes. We are thus able to decouple the RBF interpolation problem for any order of the polynomial interpolation and solve it in two steps: (1) The polynomial orthogonal RBF interpolation problem is efficiently solved in the transformed HB basis with a GMRES iteration and a diagonal, or block SSOR preconditioner. (2) The residual is then projected onto an orthonormal polynomial basis. We apply our approach on several test cases to study its effectiveness, including an application to the Best Linear Unbiased Estimator regression problem.
Network-based functional enrichment
Directory of Open Access Journals (Sweden)
Poirel Christopher L
2011-11-01
Full Text Available Abstract Background Many methods have been developed to infer and reason about molecular interaction networks. These approaches often yield networks with hundreds or thousands of nodes and up to an order of magnitude more edges. It is often desirable to summarize the biological information in such networks. A very common approach is to use gene function enrichment analysis for this task. A major drawback of this method is that it ignores information about the edges in the network being analyzed, i.e., it treats the network simply as a set of genes. In this paper, we introduce a novel method for functional enrichment that explicitly takes network interactions into account. Results Our approach naturally generalizes Fisher’s exact test, a gene set-based technique. Given a function of interest, we compute the subgraph of the network induced by genes annotated to this function. We use the sequence of sizes of the connected components of this sub-network to estimate its connectivity. We estimate the statistical significance of the connectivity empirically by a permutation test. We present three applications of our method: i determine which functions are enriched in a given network, ii given a network and an interesting sub-network of genes within that network, determine which functions are enriched in the sub-network, and iii given two networks, determine the functions for which the connectivity improves when we merge the second network into the first. Through these applications, we show that our approach is a natural alternative to network clustering algorithms. Conclusions We presented a novel approach to functional enrichment that takes into account the pairwise relationships among genes annotated by a particular function. Each of the three applications discovers highly relevant functions. We used our methods to study biological data from three different organisms. Our results demonstrate the wide applicability of our methods. Our algorithms are
Representation of Functional Data in Neural Networks
Rossi, Fabrice; Conan-Guez, Brieuc; Verleysen, Michel
2005-01-01
Functional Data Analysis (FDA) is an extension of traditional data analysis to functional data, for example spectra, temporal series, spatio-temporal images, gesture recognition data, etc. Functional data are rarely known in practice; usually a regular or irregular sampling is known. For this reason, some processing is needed in order to benefit from the smooth character of functional data in the analysis methods. This paper shows how to extend the Radial-Basis Function Networks (RBFN) and Multi-Layer Perceptron (MLP) models to functional data inputs, in particular when the latter are known through lists of input-output pairs. Various possibilities for functional processing are discussed, including the projection on smooth bases, Functional Principal Component Analysis, functional centering and reduction, and the use of differential operators. It is shown how to incorporate these functional processing into the RBFN and MLP models. The functional approach is illustrated on a benchmark of spectrometric data ana...
Institute of Scientific and Technical Information of China (English)
陈晶; 王文圣; 李跃清
2011-01-01
将集对分析与径向基函数神经网络结合,提出了集对分析径向基函数神经网络预测模型.模型思路是将研究对象t-1时和t时的影响因子集构造为集对并计算联系度,由联系度的同一度、差异度、对立度及研究对象t-1时的值为输入,研究对象t时的值为输出,构建径向基函数神经网络.以年径流预测为例研究表明,模型结构清晰、步骤明确、预测精度较高,为集对分析应用于水文预测提供了新思路.%The proposed SPA-RBFNN prediction model is a combination of set pair analysis (SPA) and radial basis function neural network (RBFNN). The idea of SPA-RBFNN, firstly sets the impact factors of research object in both t-1 and t period of time as a pair, and calculates the connection degree of the pair, then uses its calculated homology degree, difference degree and antinomy degree, along with the situation of research object in t-1 period of time as model input, the situation of research object in t period of time as model output, finally finishes the model establishment. The case study of annual runoff prediction shows that SPARBFNN prediction model is characterized by explicit structure, easy realization and good prediction ability. The model construction idea provides a new thinking for the application of SPA in solving the hydrological prediction problems.
Aging and Functional Brain Networks
Tomasi, Dardo; Volkow, Nora D.
2011-01-01
Aging is associated with changes in human brain anatomy and function and cognitive decline. Recent studies suggest the aging decline of major functional connectivity hubs in the “default-mode” network (DMN). Aging effects on other networks, however, are largely unknown. We hypothesized that aging would be associated with a decline of short- and long-range functional connectivity density (FCD) hubs in the DMN. To test this hypothesis we evaluated resting-state datasets corresponding to 913 hea...
Construction of `Wachspress Type' Rational Basis Functions over Rectangles
Indian Academy of Sciences (India)
P L Powar; S S Rana
2000-02-01
In the present paper, we have constructed rational basis functions of 0 class over rectangular elements with wider choice of denominator function. This construction yields additional number of interior nodes. Hence, extra nodal points and the flexibility of denominator function suggest better approximation.
Dynamic Analysis of Wind Turbine Blades Using Radial Basis Functions
Ming-Hung Hsu
2011-01-01
Wind turbine blades play important roles in wind energy generation. The dynamic problems associated with wind turbine blades are formulated using radial basis functions. The radial basis function procedure is used to transform partial differential equations, which represent the dynamic behavior of wind turbine blades, into a discrete eigenvalue problem. Numerical results demonstrate that rotational speed significantly impacts the first frequency of a wind turbine blade. Moreover, the...
Aging and functional brain networks
Energy Technology Data Exchange (ETDEWEB)
Tomasi D.; Tomasi, D.; Volkow, N.D.
2011-07-11
Aging is associated with changes in human brain anatomy and function and cognitive decline. Recent studies suggest the aging decline of major functional connectivity hubs in the 'default-mode' network (DMN). Aging effects on other networks, however, are largely unknown. We hypothesized that aging would be associated with a decline of short- and long-range functional connectivity density (FCD) hubs in the DMN. To test this hypothesis, we evaluated resting-state data sets corresponding to 913 healthy subjects from a public magnetic resonance imaging database using functional connectivity density mapping (FCDM), a voxelwise and data-driven approach, together with parallel computing. Aging was associated with pronounced long-range FCD decreases in DMN and dorsal attention network (DAN) and with increases in somatosensory and subcortical networks. Aging effects in these networks were stronger for long-range than for short-range FCD and were also detected at the level of the main functional hubs. Females had higher short- and long-range FCD in DMN and lower FCD in the somatosensory network than males, but the gender by age interaction effects were not significant for any of the networks or hubs. These findings suggest that long-range connections may be more vulnerable to aging effects than short-range connections and that, in addition to the DMN, the DAN is also sensitive to aging effects, which could underlie the deterioration of attention processes that occurs with aging.
Functional Aspects of Biological Networks
Sneppen, Kim
2007-03-01
We discuss biological networks with respect to 1) relative positioning and importance of high degree nodes, 2) function and signaling, 3) logic and dynamics of regulation. Visually the soft modularity of many real world networks can be characterized in terms of number of high and low degrees nodes positioned relative to each other in a landscape analogue with mountains (high-degree nodes) and valleys (low-degree nodes). In these terms biological networks looks like rugged landscapes with separated peaks, hub proteins, which each are roughly as essential as any of the individual proteins on the periphery of the hub. Within each sup-domain of a molecular network one can often identify dynamical feedback mechanisms that falls into combinations of positive and negative feedback circuits. We will illustrate this with examples taken from phage regulation and bacterial uptake and regulation of small molecules. In particular we find that a double negative regulation often are replaced by a single positive link in unrelated organisms with same functional requirements. Overall we argue that network topology primarily reflects functional constraints. References: S. Maslov and K. Sneppen. ``Computational architecture of the yeast regulatory network." Phys. Biol. 2:94 (2005) A. Trusina et al. ``Functional alignment of regulatory networks: A study of temerate phages". Plos Computational Biology 1:7 (2005). J.B. Axelsen et al. ``Degree Landscapes in Scale-Free Networks" physics/0512075 (2005). A. Trusina et al. ``Hierarchy and Anti-Hierarchy in Real and Scale Free networks." PRL 92:178702 (2004) S. Semsey et al. ``Genetic Regulation of Fluxes: Iron Homeostasis of Escherichia coli". (2006) q-bio.MN/0609042
Świetlicka, Izabela; Muszyński, Siemowit; Marzec, Agata
2015-04-01
The presented work covers the problem of developing a method of extruded bread classification with the application of artificial neural networks. Extruded flat graham, corn, and rye breads differening in water activity were used. The breads were subjected to the compression test with simultaneous registration of acoustic signal. The amplitude-time records were analyzed both in time and frequency domains. Acoustic emission signal parameters: single energy, counts, amplitude, and duration acoustic emission were determined for the breads in four water activities: initial (0.362 for rye, 0.377 for corn, and 0.371 for graham bread), 0.432, 0.529, and 0.648. For classification and the clustering process, radial basis function, and self-organizing maps (Kohonen network) were used. Artificial neural networks were examined with respect to their ability to classify or to cluster samples according to the bread type, water activity value, and both of them. The best examination results were achieved by the radial basis function network in classification according to water activity (88%), while the self-organizing maps network yielded 81% during bread type clustering.
Acoustics of a flanged cylindrical pipe using singular basis functions
Amir; Matzner; Shtrikman
2000-02-01
The problem of acoustic radiation from a cylindrical pipe with an infinite flange has been discussed in a number of papers. The most common approach is to decompose the field inside the pipe over a basis of Bessel functions. A very large number of basis functions is usually required, with a large degree of ripple appearing as an artifact in the solution. In this paper it is shown that a close analysis of the velocity field near the corner yields a new family of functions, which are called "edge functions." Using this set of functions as test functions and applying the moment method on the boundary between the waveguide and free space, a solution is obtained with greatly improved convergence properties and no ripple. PMID:10687680
Point Set Denoising Using Bootstrap-Based Radial Basis Function
Ramli, Ahmad; Abd. Majid, Ahmad
2016-01-01
This paper examines the application of a bootstrap test error estimation of radial basis functions, specifically thin-plate spline fitting, in surface smoothing. The presence of noisy data is a common issue of the point set model that is generated from 3D scanning devices, and hence, point set denoising is one of the main concerns in point set modelling. Bootstrap test error estimation, which is applied when searching for the smoothing parameters of radial basis functions, is revisited. The main contribution of this paper is a smoothing algorithm that relies on a bootstrap-based radial basis function. The proposed method incorporates a k-nearest neighbour search and then projects the point set to the approximated thin-plate spline surface. Therefore, the denoising process is achieved, and the features are well preserved. A comparison of the proposed method with other smoothing methods is also carried out in this study. PMID:27315105
Speech/Nonspeech Detection Using Minimal Walsh Basis Functions
Directory of Open Access Journals (Sweden)
Pwint Moe
2007-01-01
Full Text Available This paper presents a new method to detect speech/nonspeech components of a given noisy signal. Employing the combination of binary Walsh basis functions and an analysis-synthesis scheme, the original noisy speech signal is modified first. From the modified signals, the speech components are distinguished from the nonspeech components by using a simple decision scheme. Minimal number of Walsh basis functions to be applied is determined using singular value decomposition (SVD. The main advantages of the proposed method are low computational complexity, less parameters to be adjusted, and simple implementation. It is observed that the use of Walsh basis functions makes the proposed algorithm efficiently applicable in real-world situations where processing time is crucial. Simulation results indicate that the proposed algorithm achieves high-speech and nonspeech detection rates while maintaining a low error rate for different noisy conditions.
Function approximation in inhibitory networks.
Tripp, Bryan; Eliasmith, Chris
2016-05-01
In performance-optimized artificial neural networks, such as convolutional networks, each neuron makes excitatory connections with some of its targets and inhibitory connections with others. In contrast, physiological neurons are typically either excitatory or inhibitory, not both. This is a puzzle, because it seems to constrain computation, and because there are several counter-examples that suggest that it may not be a physiological necessity. Parisien et al. (2008) showed that any mixture of excitatory and inhibitory functional connections could be realized by a purely excitatory projection in parallel with a two-synapse projection through an inhibitory population. They showed that this works well with ratios of excitatory and inhibitory neurons that are realistic for the neocortex, suggesting that perhaps the cortex efficiently works around this apparent computational constraint. Extending this work, we show here that mixed excitatory and inhibitory functional connections can also be realized in networks that are dominated by inhibition, such as those of the basal ganglia. Further, we show that the function-approximation capacity of such connections is comparable to that of idealized mixed-weight connections. We also study whether such connections are viable in recurrent networks, and find that such recurrent networks can flexibly exhibit a wide range of dynamics. These results offer a new perspective on computation in the basal ganglia, and also perhaps on inhibitory networks within the cortex. PMID:26963256
Optimal Piecewise Linear Basis Functions in Two Dimensions
Energy Technology Data Exchange (ETDEWEB)
Brooks III, E D; Szoke, A
2009-01-26
We use a variational approach to optimize the center point coefficients associated with the piecewise linear basis functions introduced by Stone and Adams [1], for polygonal zones in two Cartesian dimensions. Our strategy provides optimal center point coefficients, as a function of the location of the center point, by minimizing the error induced when the basis function interpolation is used for the solution of the time independent diffusion equation within the polygonal zone. By using optimal center point coefficients, one expects to minimize the errors that occur when these basis functions are used to discretize diffusion equations, or transport equations in optically thick zones (where they approach the solution of the diffusion equation). Our optimal center point coefficients satisfy the requirements placed upon the basis functions for any location of the center point. We also find that the location of the center point can be optimized, but this requires numerical calculations. Curiously, the optimum center point location is independent of the values of the dependent variable on the corners only for quadrilaterals.
Basis convergence of range-separated density-functional theory
International Nuclear Information System (INIS)
Range-separated density-functional theory (DFT) is an alternative approach to Kohn-Sham density-functional theory. The strategy of range-separated density-functional theory consists in separating the Coulomb electron-electron interaction into long-range and short-range components and treating the long-range part by an explicit many-body wave-function method and the short-range part by a density-functional approximation. Among the advantages of using many-body methods for the long-range part of the electron-electron interaction is that they are much less sensitive to the one-electron atomic basis compared to the case of the standard Coulomb interaction. Here, we provide a detailed study of the basis convergence of range-separated density-functional theory. We study the convergence of the partial-wave expansion of the long-range wave function near the electron-electron coalescence. We show that the rate of convergence is exponential with respect to the maximal angular momentum L for the long-range wave function, whereas it is polynomial for the case of the Coulomb interaction. We also study the convergence of the long-range second-order Møller-Plesset correlation energy of four systems (He, Ne, N2, and H2O) with cardinal number X of the Dunning basis sets cc − p(C)V XZ and find that the error in the correlation energy is best fitted by an exponential in X. This leads us to propose a three-point complete-basis-set extrapolation scheme for range-separated density-functional theory based on an exponential formula
47 CFR 51.307 - Duty to provide access on an unbundled basis to network elements.
2010-10-01
... network elements. 51.307 Section 51.307 Telecommunication FEDERAL COMMUNICATIONS COMMISSION (CONTINUED... Carriers § 51.307 Duty to provide access on an unbundled basis to network elements. (a) An incumbent LEC... service, nondiscriminatory access to network elements on an unbundled basis at any technically...
Network Decomposition and Maximum Independent Set Part Ⅰ: Theoretic Basis
Institute of Scientific and Technical Information of China (English)
朱松年; 朱嫱
2003-01-01
The structure and characteristics of a connected network are analyzed, and a special kind of sub-network, which can optimize the iteration processes, is discovered. Then, the sufficient and necessary conditions for obtaining the maximum independent set are deduced. It is found that the neighborhood of this sub-network possesses the similar characters, but both can never be allowed incorporated together. Particularly, it is identified that the network can be divided into two parts by a certain style, and then both of them can be transformed into a pair sets network, where the special sub-networks and their neighborhoods appear alternately distributed throughout the entire pair sets network. By use of this characteristic, the network decomposed enough without losing any solutions is obtained. All of these above will be able to make well ready for developing a much better algorithm with polynomial time bound for an odd network in the the application research part of this subject.
Caffeine Modulates Attention Network Function
Brunye, Tad T.; Mahoney, Caroline R.; Lieberman, Harris R.; Taylor, Holly A.
2010-01-01
The present work investigated the effects of caffeine (0 mg, 100 mg, 200 mg, 400 mg) on a flanker task designed to test Posner's three visual attention network functions: alerting, orienting, and executive control [Posner, M. I. (2004). "Cognitive neuroscience of attention". New York, NY: Guilford Press]. In a placebo-controlled, double-blind…
Artificial neural network modeling of fixed bed biosorption using radial basis approach
Saha, Dipendu; Bhowal, Avijit; Datta, Siddhartha
2010-04-01
In modern day scenario, biosorption is a cost effective separation technology for the removal of various pollutants from wastewater and waste streams from various process industries. The difficulties associated in rigorous mathematical modeling of a fixed bed bio-adsorbing systems due to the complexities of the process often makes the development of pure black-box artificial neural network (ANN) models particularly useful in this field. In this work, radial basis function network has been employed as ANN to model the breakthrough curves in fixed bed biosorption. The prediction has been compared to the experimental breakthrough curves of Cadmium, Lanthanum and a dye available in the literature. Results show that this network gives fairly accurate representation of the actual breakthrough curves. The results obtained from ANN modeling approach shows the better agreement between experimental and predicted breakthrough curves as the error for all these situations are within 6%.
Directory of Open Access Journals (Sweden)
Chennubhotla Chakra
2006-10-01
Full Text Available Abstract Background Signal recognition and information processing is a fundamental cellular function, which in part involves comprehensive transcriptional regulatory (TR mechanisms carried out in response to complex environmental signals in the context of the cell's own internal state. However, the network topological basis of developing such integrated responses remains poorly understood. Results By studying the TR network of the yeast Saccharomyces cerevisiae we show that an intermediate layer of transcription factors naturally segregates into distinct subnetworks. In these topological units transcription factors are densely interlinked in a largely hierarchical manner and respond to external signals by utilizing a fraction of these subnets. Conclusion As transcriptional regulation represents the 'slow' component of overall information processing, the identified topology suggests a model in which successive waves of transcriptional regulation originating from distinct fractions of the TR network control robust integrated responses to complex stimuli.
The Functional Requirements and Design Basis for Information Barriers
Energy Technology Data Exchange (ETDEWEB)
Fuller, James L.
2012-05-01
This report summarizes the results of the Information Barrier Working Group workshop held at Sandia National Laboratory in Albuquerque, NM, February 2-4, 1999. This workshop was convened to establish the functional requirements associated with warhead radiation signature information barriers, to identify the major design elements of any such system or approach, and to identify a design basis for each of these major elements. Such information forms the general design basis to be used in designing, fabricating, and evaluating the complete integrated systems developed for specific purposes.
A T Matrix Method Based upon Scalar Basis Functions
Mackowski, D.W.; Kahnert, F. M.; Mishchenko, Michael I.
2013-01-01
A surface integral formulation is developed for the T matrix of a homogenous and isotropic particle of arbitrary shape, which employs scalar basis functions represented by the translation matrix elements of the vector spherical wave functions. The formulation begins with the volume integral equation for scattering by the particle, which is transformed so that the vector and dyadic components in the equation are replaced with associated dipole and multipole level scalar harmonic wave functions. The approach leads to a volume integral formulation for the T matrix, which can be extended, by use of Green's identities, to the surface integral formulation. The result is shown to be equivalent to the traditional surface integral formulas based on the VSWF basis.
Algebraic evaluation of matrix elements in the Laguerre function basis
McCoy, A. E.; Caprio, M. A.
2016-02-01
The Laguerre functions constitute one of the fundamental basis sets for calculations in atomic and molecular electron-structure theory, with applications in hadronic and nuclear theory as well. While similar in form to the Coulomb bound-state eigenfunctions (from the Schrödinger eigenproblem) or the Coulomb-Sturmian functions (from a related Sturm-Liouville problem), the Laguerre functions, unlike these former functions, constitute a complete, discrete, orthonormal set for square-integrable functions in three dimensions. We construct the SU(1, 1) × SO(3) dynamical algebra for the Laguerre functions and apply the ideas of factorization (or supersymmetric quantum mechanics) to derive shift operators for these functions. We use the resulting algebraic framework to derive analytic expressions for matrix elements of several basic radial operators (involving powers of the radial coordinate and radial derivative) in the Laguerre function basis. We illustrate how matrix elements for more general spherical tensor operators in three dimensional space, such as the gradient, may then be constructed from these radial matrix elements.
Human brain networks function in connectome-specific harmonic waves
Atasoy, Selen; Donnelly, Isaac; Pearson, Joel
2016-01-01
A key characteristic of human brain activity is coherent, spatially distributed oscillations forming behaviour-dependent brain networks. However, a fundamental principle underlying these networks remains unknown. Here we report that functional networks of the human brain are predicted by harmonic patterns, ubiquitous throughout nature, steered by the anatomy of the human cerebral cortex, the human connectome. We introduce a new technique extending the Fourier basis to the human connectome. In...
Application of the Characteristic Basis Function Method Using CUDA
Directory of Open Access Journals (Sweden)
Juan Ignacio Pérez
2014-01-01
Full Text Available The characteristic basis function method (CBFM is a popular technique for efficiently solving the method of moments (MoM matrix equations. In this work, we address the adaptation of this method to a relatively new computing infrastructure provided by NVIDIA, the Compute Unified Device Architecture (CUDA, and take into account some of the limitations which appear when the geometry under analysis becomes too big to fit into the Graphics Processing Unit’s (GPU’s memory.
Practical auxiliary basis implementation of Rung 3.5 functionals.
Janesko, Benjamin G; Scalmani, Giovanni; Frisch, Michael J
2014-07-21
Approximate exchange-correlation functionals for Kohn-Sham density functional theory often benefit from incorporating exact exchange. Exact exchange is constructed from the noninteracting reference system's nonlocal one-particle density matrix γ(r(->), r(->)'). Rung 3.5 functionals attempt to balance the strengths and limitations of exact exchange using a new ingredient, a projection of γ(r(->), r(->)') onto a semilocal model density matrix γ(SL)(ρ(r(->)), ∇ρ(r(->)), r(->) - r(->)'). γSL depends on the electron density ρ(r(->) at reference point r(->), and is closely related to semilocal model exchange holes. We present a practical implementation of Rung 3.5 functionals, expanding the r(->) - r(->)' dependence of γSL in an auxiliary basis set. Energies and energy derivatives are obtained from 3D numerical integration as in standard semilocal functionals. We also present numerical tests of a range of properties, including molecular thermochemistry and kinetics, geometries and vibrational frequencies, and bandgaps and excitation energies. Rung 3.5 functionals typically provide accuracy intermediate between semilocal and hybrid approximations. Nonlocal potential contributions from γSL yield interesting successes and failures for band structures and excitation energies. The results enable and motivate continued exploration of Rung 3.5 functional forms. PMID:25053297
Product design on the basis of fuzzy quality function deployment
Institute of Scientific and Technical Information of China (English)
无
2008-01-01
In the implementation of quality function deployment (QFD), the determination of the target values of engineering characteristics is a complex decision process with multiple variables and multiple objectives that should trade off, and optimize all kinds of conflicts and constraints. A fuzzy linear programming model (FLP) is proposed. On the basis of the inherent fuzziness of QFD system, triangular fuzzy numbers are used to represent all the relationships and correlations, and then, the functional relationships between the customer needs and engineering characteristics and the functional correlations among the engineering characteristics are determined with the information in the house of quality (HoQ) fully used. The fuzzy linear programming (FLP) model aims to find the optimal target values of the engineering characteristics to maximize the customer satisfaction. Finally, the proposed method is illustrated by a numerical example.
Wave forecasting in near real time basis by neural network
Digital Repository Service at National Institute of Oceanography (India)
Rao, S.; Mandal, S.; Prabaharan, N.
., forecasting of waves become an important aspect of marine environment. This paper presents application of the neural network (NN) with better update algorithms, namely rprop, quickprop and superSAB for wave forecasting. Measured waves off Marmagoa, Goa, India...
The Gaussian Radial Basis Function Method for Plasma Kinetic Theory
Hirvijoki, Eero; Belli, Emily; Embréus, Ola
2015-01-01
A fundamental macroscopic description of a magnetized plasma is the Vlasov equation supplemented by the nonlinear inverse-square force Fokker-Planck collision operator [Rosenbluth et al., Phys. Rev., 107, 1957]. The Vlasov part describes advection in a six-dimensional phase space whereas the collision operator involves friction and diffusion coefficients that are weighted velocity-space integrals of the particle distribution function. The Fokker-Planck collision operator is an integro-differential, bilinear operator, and numerical discretization of the operator is far from trivial. In this letter, we describe a new approach to discretize the entire kinetic system based on an expansion in Gaussian Radial Basis functions (RBFs). This approach is particularly well-suited to treat the collision operator because the friction and diffusion coefficients can be analytically calculated. Although the RBF method is known to be a powerful scheme for the interpolation of scattered multidimensional data, Gaussian RBFs also...
Practical auxiliary basis implementation of Rung 3.5 functionals
Energy Technology Data Exchange (ETDEWEB)
Janesko, Benjamin G., E-mail: b.janesko@tcu.edu [Department of Chemistry, Texas Christian University, Fort Worth, Texas 76129 (United States); Scalmani, Giovanni; Frisch, Michael J. [Gaussian, Inc., 340 Quinnipiac St., Bldg. 40, Wallingford, Connecticut 06492 (United States)
2014-07-21
Approximate exchange-correlation functionals for Kohn-Sham density functional theory often benefit from incorporating exact exchange. Exact exchange is constructed from the noninteracting reference system's nonlocal one-particle density matrix γ(r{sup -vector},r{sup -vector}′). Rung 3.5 functionals attempt to balance the strengths and limitations of exact exchange using a new ingredient, a projection of γ(r{sup -vector},r{sup -vector} ′) onto a semilocal model density matrix γ{sub SL}(ρ(r{sup -vector}),∇ρ(r{sup -vector}),r{sup -vector}−r{sup -vector} ′). γ{sub SL} depends on the electron density ρ(r{sup -vector}) at reference point r{sup -vector}, and is closely related to semilocal model exchange holes. We present a practical implementation of Rung 3.5 functionals, expanding the r{sup -vector}−r{sup -vector} ′ dependence of γ{sub SL} in an auxiliary basis set. Energies and energy derivatives are obtained from 3D numerical integration as in standard semilocal functionals. We also present numerical tests of a range of properties, including molecular thermochemistry and kinetics, geometries and vibrational frequencies, and bandgaps and excitation energies. Rung 3.5 functionals typically provide accuracy intermediate between semilocal and hybrid approximations. Nonlocal potential contributions from γ{sub SL} yield interesting successes and failures for band structures and excitation energies. The results enable and motivate continued exploration of Rung 3.5 functional forms.
Nikolaev, A. V.; Lamoen, D.; Partoens, B.
2016-07-01
In order to increase the accuracy of the linearized augmented plane wave (LAPW) method, we present a new approach where the plane wave basis function is augmented by two different atomic radial components constructed at two different linearization energies corresponding to two different electron bands (or energy windows). We demonstrate that this case can be reduced to the standard treatment within the LAPW paradigm where the usual basis set is enriched by the basis functions of the tight binding type, which go to zero with zero derivative at the sphere boundary. We show that the task is closely related with the problem of extended core states which is currently solved by applying the LAPW method with local orbitals (LAPW+LO). In comparison with LAPW+LO, the number of supplemented basis functions in our approach is doubled, which opens up a new channel for the extension of the LAPW and LAPW+LO basis sets. The appearance of new supplemented basis functions absent in the LAPW+LO treatment is closely related with the existence of the u ˙ l -component in the canonical LAPW method. We discuss properties of additional tight binding basis functions and apply the extended basis set for computation of electron energy bands of lanthanum (face and body centered structures) and hexagonal close packed lattice of cadmium. We demonstrate that the new treatment gives lower total energies in comparison with both canonical LAPW and LAPW+LO, with the energy difference more pronounced for intermediate and poor LAPW basis sets.
Institute of Scientific and Technical Information of China (English)
陈正洪; 王勇; 李艳
2008-01-01
A closed-chain robot has several advantages over an open-chain robot, such as high mechanical rigidity, high payload, high precision. Accurate trajectory control of a robot is essential in practical use. This paper presents an adaptive proportional integral differential (PID) control algorithm based on radial basis function (RBF) neural network for trajectory tracking of a two-degree-of-freedom (2-DOF) closed-chain robot. In this scheme, an RBF neural network is used to approximate the unknown nonlinear dynamics of the robot, at the same time, the PID parameters can be adjusted online and the high precision can be obtained. Simulation results show that the control algorithm accurately tracks a 2-DOF closed-chain robot trajectories. The results also indicate that the system robustness and tracking performance are superior to the classic PID method.
Czakó, Gábor; Szalay, Viktor; Császár, Attila G.
2006-01-01
The currently most efficient finite basis representation (FBR) method [Corey et al., in Numerical Grid Methods and Their Applications to Schrödinger Equation, NATO ASI Series C, edited by C. Cerjan (Kluwer Academic, New York, 1993), Vol. 412, p. 1; Bramley et al., J. Chem. Phys. 100, 6175 (1994)] designed specifically to deal with nondirect product bases of structures ϕnl(s)fl(u), χml(t)ϕnl(s)fl(u), etc., employs very special l-independent grids and results in a symmetric FBR. While highly efficient, this method is not general enough. For instance, it cannot deal with nondirect product bases of the above structure efficiently if the functions ϕnl(s) [and/or χml(t)] are discrete variable representation (DVR) functions of the infinite type. The optimal-generalized FBR(DVR) method [V. Szalay, J. Chem. Phys. 105, 6940 (1996)] is designed to deal with general, i.e., direct and/or nondirect product, bases and grids. This robust method, however, is too general, and its direct application can result in inefficient computer codes [Czakó et al., J. Chem. Phys. 122, 024101 (2005)]. It is shown here how the optimal-generalized FBR method can be simplified in the case of nondirect product bases of structures ϕnl(s)fl(u), χml(t)ϕnl(s)fl(u), etc. As a result the commonly used symmetric FBR is recovered and simplified nonsymmetric FBRs utilizing very special l-dependent grids are obtained. The nonsymmetric FBRs are more general than the symmetric FBR in that they can be employed efficiently even when the functions ϕnl(s) [and/or χml(t)] are DVR functions of the infinite type. Arithmetic operation counts and a simple numerical example presented show unambiguously that setting up the Hamiltonian matrix requires significantly less computer time when using one of the proposed nonsymmetric FBRs than that in the symmetric FBR. Therefore, application of this nonsymmetric FBR is more efficient than that of the symmetric FBR when one wants to diagonalize the Hamiltonian matrix
Quantifying and Analyzing the Network Basis of Genetic Complexity
Thompson, Ethan G.; Galitski, Timothy
2012-01-01
Genotype-to-phenotype maps exhibit complexity. This genetic complexity is mentioned frequently in the literature, but a consistent and quantitative definition is lacking. Here, we derive such a definition and investigate its consequences for model genetic systems. The definition equates genetic complexity with a surplus of genotypic diversity over phenotypic diversity. Applying this definition to ensembles of Boolean network models, we found that the in-degree distribution and the number of p...
Network stratification analysis for identifying function-specific network layers.
Zhang, Chuanchao; Wang, Jiguang; Zhang, Chao; Liu, Juan; Xu, Dong; Chen, Luonan
2016-04-22
A major challenge of systems biology is to capture the rewiring of biological functions (e.g. signaling pathways) in a molecular network. To address this problem, we proposed a novel computational framework, namely network stratification analysis (NetSA), to stratify the whole biological network into various function-specific network layers corresponding to particular functions (e.g. KEGG pathways), which transform the network analysis from the gene level to the functional level by integrating expression data, the gene/protein network and gene ontology information altogether. The application of NetSA in yeast and its comparison with a traditional network-partition both suggest that NetSA can more effectively reveal functional implications of network rewiring and extract significant phenotype-related biological processes. Furthermore, for time-series or stage-wise data, the function-specific network layer obtained by NetSA is also shown to be able to characterize the disease progression in a dynamic manner. In particular, when applying NetSA to hepatocellular carcinoma and type 1 diabetes, we can derive functional spectra regarding the progression of the disease, and capture active biological functions (i.e. active pathways) in different disease stages. The additional comparison between NetSA and SPIA illustrates again that NetSA could discover more complete biological functions during disease progression. Overall, NetSA provides a general framework to stratify a network into various layers of function-specific sub-networks, which can not only analyze a biological network on the functional level but also investigate gene rewiring patterns in biological processes. PMID:26879865
Explicit transverse leakage treatment using an analytic basis function expansion
International Nuclear Information System (INIS)
An explicit method for calculating the transverse leakage is presented in this paper. The method is based upon the use of analytic basis functions, which represent individual eigenfunctions of the neutron diffusion equation. The intranodal flux solution is expressed as an eigenspace, and can be solved by using the already calculated surface currents and flux moments as boundary conditions. The salient feature of the method, therefore, is that no ad hoc presumptions are made with regard to the leakage shape. The individual eigenfunctions are calculated based upon already calculated parameters from the flux solution and response matrix solution, and therefore no additional parameters are introduced into the problem, which could lead to an unwanted increase in computation time. The new transverse leakage method is implemented in PSU's NEM code and is tested against the OECD/NEA 3D C5G7 rodded MOX benchmark and the C3 benchmark. (author)
Optimized Radial Basis Function Classifier for Multi Modal Biometrics
Directory of Open Access Journals (Sweden)
Anand Viswanathan
2014-07-01
Full Text Available Biometric systems can be used for the identification or verification of humans based on their physiological or behavioral features. In these systems the biometric characteristics such as fingerprints, palm-print, iris or speech can be recorded and are compared with the samples for the identification or verification. Multimodal biometrics is more accurate and solves spoof attacks than the single modal bio metrics systems. In this study, a multimodal biometric system using fingerprint images and finger-vein patterns is proposed and also an optimized Radial Basis Function (RBF kernel classifier is proposed to identify the authorized users. The extracted features from these modalities are selected by PCA and kernel PCA and combined to classify by RBF classifier. The parameters of RBF classifier is optimized by using BAT algorithm with local search. The performance of the proposed classifier is compared with the KNN classifier, Naïve Bayesian classifier and non-optimized RBF classifier.
Adaptive radial basis function mesh deformation using data reduction
Gillebaart, T.; Blom, D. S.; van Zuijlen, A. H.; Bijl, H.
2016-09-01
Radial Basis Function (RBF) mesh deformation is one of the most robust mesh deformation methods available. Using the greedy (data reduction) method in combination with an explicit boundary correction, results in an efficient method as shown in literature. However, to ensure the method remains robust, two issues are addressed: 1) how to ensure that the set of control points remains an accurate representation of the geometry in time and 2) how to use/automate the explicit boundary correction, while ensuring a high mesh quality. In this paper, we propose an adaptive RBF mesh deformation method, which ensures the set of control points always represents the geometry/displacement up to a certain (user-specified) criteria, by keeping track of the boundary error throughout the simulation and re-selecting when needed. Opposed to the unit displacement and prescribed displacement selection methods, the adaptive method is more robust, user-independent and efficient, for the cases considered. Secondly, the analysis of a single high aspect ratio cell is used to formulate an equation for the correction radius needed, depending on the characteristics of the correction function used, maximum aspect ratio, minimum first cell height and boundary error. Based on the analysis two new radial basis correction functions are derived and proposed. This proposed automated procedure is verified while varying the correction function, Reynolds number (and thus first cell height and aspect ratio) and boundary error. Finally, the parallel efficiency is studied for the two adaptive methods, unit displacement and prescribed displacement for both the CPU as well as the memory formulation with a 2D oscillating and translating airfoil with oscillating flap, a 3D flexible locally deforming tube and deforming wind turbine blade. Generally, the memory formulation requires less work (due to the large amount of work required for evaluating RBF's), but the parallel efficiency reduces due to the limited
Network Physiology reveals relations between network topology and physiological function
Bashan, Amir; Kantelhardt, Jan W; Havlin, Shlomo; Ivanov, Plamen Ch; 10.1038/ncomms1705
2012-01-01
The human organism is an integrated network where complex physiologic systems, each with its own regulatory mechanisms, continuously interact, and where failure of one system can trigger a breakdown of the entire network. Identifying and quantifying dynamical networks of diverse systems with different types of interactions is a challenge. Here, we develop a framework to probe interactions among diverse systems, and we identify a physiologic network. We find that each physiologic state is characterized by a specific network structure, demonstrating a robust interplay between network topology and function. Across physiologic states the network undergoes topological transitions associated with fast reorganization of physiologic interactions on time scales of a few minutes, indicating high network flexibility in response to perturbations. The proposed system-wide integrative approach may facilitate the development of a new field, Network Physiology.
Circadian gating of neuronal functionality: a basis for iterative metaplasticity.
Iyer, Rajashekar; Wang, Tongfei A; Gillette, Martha U
2014-01-01
Brain plasticity, the ability of the nervous system to encode experience, is a modulatory process leading to long-lasting structural and functional changes. Salient experiences induce plastic changes in neurons of the hippocampus, the basis of memory formation and recall. In the suprachiasmatic nucleus (SCN), the central circadian (~24-h) clock, experience with light at night induces changes in neuronal state, leading to circadian plasticity. The SCN's endogenous ~24-h time-generator comprises a dynamic series of functional states, which gate plastic responses. This restricts light-induced alteration in SCN state-dynamics and outputs to the nighttime. Endogenously generated circadian oscillators coordinate the cyclic states of excitability and intracellular signaling molecules that prime SCN receptivity to plasticity signals, generating nightly windows of susceptibility. We propose that this constitutes a paradigm of ~24-h iterative metaplasticity, the repeated, patterned occurrence of susceptibility to induction of neuronal plasticity. We detail effectors permissive for the cyclic susceptibility to plasticity. We consider similarities of intracellular and membrane mechanisms underlying plasticity in SCN circadian plasticity and in hippocampal long-term potentiation (LTP). The emerging prominence of the hippocampal circadian clock points to iterative metaplasticity in that tissue as well. Exploring these links holds great promise for understanding circadian shaping of synaptic plasticity, learning, and memory. PMID:25285070
Reconstructing the magnetosphere from data using radial basis functions
Andreeva, Varvara A.; Tsyganenko, Nikolai A.
2016-03-01
A new method is proposed to derive from data magnetospheric magnetic field configurations without any a priori assumptions on the geometry of electric currents. The approach utilizes large sets of archived satellite data and uses an advanced technique to represent the field as a sum of toroidal and poloidal parts, whose generating potentials Ψ1 and Ψ2 are expanded into series of radial basis functions (RBFs) with their nodes regularly distributed over the 3-D modeling domain. The method was tested by reconstructing the inner and high-latitude field within geocentric distances up to 12RE on the basis of magnetometer data of Geotail, Polar, Cluster, Time History of Events and Macroscale Interactions during Substorms, and Van Allen space probes, taken during 1995-2015. Four characteristic states of the magnetosphere before and during a disturbance have been modeled: a quiet prestorm period, storm deepening phase with progressively decreasing SYM-H index, the storm maximum around the negative peak of SYM-H, and the recovery phase. Fitting the RBF model to data faithfully resolved contributions to the total magnetic field from all principal sources, including the westward and eastward ring current, the tail current, diamagnetic currents associated with the polar cusps, and the large-scale effect of the field-aligned currents. For two main phase conditions, the model field exhibited a strong dawn-dusk asymmetry of the low-latitude magnetic depression, extending to low altitudes and partly spreading sunward from the terminator plane in the dusk sector. The RBF model was found to resolve even finer details, such as the bifurcation of the innermost tail current. The method can be further developed into a powerful tool for data-based studies of the magnetospheric currents.
Collision avoidance for a mobile robot based on radial basis function hybrid force control technique
Institute of Scientific and Technical Information of China (English)
Wen Shu-Huan
2009-01-01
Collision avoidance is always difficult in the planning path for a mobile robot. In this paper, the virtual force field between a mobile robot and an obstacle is formed and regulated to maintain a desired distance by hybrid force control algorithm. Since uncertainties from robot dynamics and obstacle degrade the performance of a collision avoidance task, intelligent control is used to compensate for the uncertainties. A radial basis function (RBF) neural network is used to regulate the force field of an accurate distance between a robot and an obstacle in this paper and then simulation studies are conducted to confirm that the proposed algorithm is effective.
Kaye, Jason; Yang, Chao
2014-01-01
Kohn-Sham density functional theory is one of the most widely used electronic structure theories. The recently developed adaptive local basis functions form an accurate and systematically improvable basis set for solving Kohn-Sham density functional theory using discontinuous Galerkin methods, requiring a small number of basis functions per atom. In this paper we develop residual-based a posteriori error estimates for the adaptive local basis approach, which can be used to guide non-uniform basis refinement for highly inhomogeneous systems such as surfaces and large molecules. The adaptive local basis functions are non-polynomial basis functions, and standard a posteriori error estimates for $hp$-refinement using polynomial basis functions do not directly apply. We generalize the error estimates for $hp$-refinement to non-polynomial basis functions. We demonstrate the practical use of the a posteriori error estimator in performing three-dimensional Kohn-Sham density functional theory calculations for quasi-2D...
The statistical basis of neural network algorithms: theory, applications, and caveats
International Nuclear Information System (INIS)
There is a growing interest in the use of algorithms based on artificial neural networks and related methods in order to perform data analyses, and even triggering, in modern high energy physics experiments. For the increasingly complex tasks faced by the HELP community, they are becoming more and more attractive, especially in view of their apparent power and case of implementation. Common to the methods under consideration is their use of correlations between input variables. Frequently, the algorithms are treated as black-boxes which are essentially incomprehensible, but provide almost magically good results. This paper describes in some detail the statistical basis by which these techniques actually function, and its connection to classical methods. Strong emphases are made on: the dangers of the blind application of these newer techniques and some methods to use them more wisely. Specific examples of relevance to high energy physics, and, in particular, to particle identification, are constructed to illustrate the importance of the ideas presented. (author)
CAD and mesh repair with Radial Basis Functions
Marchandise, E.; Piret, C.; Remacle, J.-F.
2012-03-01
In this paper we present a process that includes both model/mesh repair and mesh generation. The repair algorithm is based on an initial mesh that may be either an initial mesh of a dirty CAD model or STL triangulation with many errors such as gaps, overlaps and T-junctions. This initial mesh is then remeshed by computing a discrete parametrization with Radial Basis Functions (RBF's). We showed in [1] that a discrete parametrization can be computed by solving Partial Differential Equations (PDE's) on an initial correct mesh using finite elements. Paradoxically, the meshless character of the RBF's makes it an attractive numerical method for solving the PDE's for the parametrization in the case where the initial mesh contains errors or holes. In this work, we implement the Orthogonal Gradients method to be described in [2], as a RBF solution method for solving PDE's on arbitrary surfaces. Different examples show that the presented method is able to deal with errors such as gaps, overlaps, T-junctions and that the resulting meshes are of high quality. Moreover, the presented algorithm can be used as a hole-filling algorithm to repair meshes with undesirable holes. The overall procedure is implemented in the open-source mesh generator Gmsh [3].
Framework for Ethernet Network Functionality Testing
Directory of Open Access Journals (Sweden)
Mirza Aamir Mehmood
2011-11-01
Full Text Available Computer networks and telecommunication systems use a wide range of applications. Therefore, the power and complexity of computer networks are increasing every day which enhances the possibilities of the end user, but also makes harder the work of those who have to design, maintain and make a network efficient, optimized and secure. Ethernet functionality testing as a generic term used for checking connectivity, throughput and capability to transfer packets over the network. Especially in the packet-switch environment, Ethernet testing has become an essential part for deploying a reliable network. A platform and vendor independent framework is required to verify and test the functionality of the Ethernet network and to verify the functionality and performance of the TCP/IP stack. NetBurst is developed for Ethernet functionality testing
Institute of Scientific and Technical Information of China (English)
顾成奎; 王正欧; 孙雅明
2003-01-01
A new method for identifying nonlinear time-varying systems with unknown structure is presented. The method extends the application area of basis sequence identification. The essential idea is to utilize the learning and nonlinear approximating ability of neural networks to model the non-linearity of the system, characterize time-varying dynamics of the system by the time-varying parametric vector of the network, then the parametric vector of the network is approximated by a weighted sum of known basis sequences. Because of black-box modeling ability of neural networks, the presented method can identify nonlinear time-varying systems with unknown structure. In order to improve the real-time capability of the algorithm, the neural network is trained by a simple fast learning algorithm based on local least squares presented by the authors. The effectiveness and the performance of the method are demonstrated by some simulation results.
The functional consequences of mutualistic network architecture.
Directory of Open Access Journals (Sweden)
José M Gómez
Full Text Available The architecture and properties of many complex networks play a significant role in the functioning of the systems they describe. Recently, complex network theory has been applied to ecological entities, like food webs or mutualistic plant-animal interactions. Unfortunately, we still lack an accurate view of the relationship between the architecture and functioning of ecological networks. In this study we explore this link by building individual-based pollination networks from eight Erysimum mediohispanicum (Brassicaceae populations. In these individual-based networks, each individual plant in a population was considered a node, and was connected by means of undirected links to conspecifics sharing pollinators. The architecture of these unipartite networks was described by means of nestedness, connectivity and transitivity. Network functioning was estimated by quantifying the performance of the population described by each network as the number of per-capita juvenile plants produced per population. We found a consistent relationship between the topology of the networks and their functioning, since variation across populations in the average per-capita production of juvenile plants was positively and significantly related with network nestedness, connectivity and clustering. Subtle changes in the composition of diverse pollinator assemblages can drive major consequences for plant population performance and local persistence through modifications in the structure of the inter-plant pollination networks.
Network architecture functional description and design
Energy Technology Data Exchange (ETDEWEB)
Stans, L.; Bencoe, M.; Brown, D.; Kelly, S.; Pierson, L.; Schaldach, C.
1989-05-25
This report provides a top level functional description and design for the development and implementation of the central network to support the next generation of SNL, Albuquerque supercomputer in a UNIX{reg sign} environment. It describes the network functions and provides an architecture and topology.
Directory of Open Access Journals (Sweden)
Barbara Martini
2016-06-01
Full Text Available Emerging technologies such as Software-Defined Networks (SDN and Network Function Virtualization (NFV promise to address cost reduction and flexibility in network operation while enabling innovative network service delivery models. However, operational network service delivery solutions still need to be developed that actually exploit these technologies, especially at the multi-provider level. Indeed, the implementation of network functions as software running over a virtualized infrastructure and provisioned on a service basis let one envisage an ecosystem of network services that are dynamically and flexibly assembled by orchestrating Virtual Network Functions even across different provider domains, thereby coping with changeable user and service requirements and context conditions. In this paper we propose an approach that adopts Service-Oriented Architecture (SOA technology-agnostic architectural guidelines in the design of a solution for orchestrating and dynamically chaining Virtual Network Functions. We discuss how SOA, NFV, and SDN may complement each other in realizing dynamic network function chaining through service composition specification, service selection, service delivery, and placement tasks. Then, we describe the architecture of a SOA-inspired NFV orchestrator, which leverages SDN-based network control capabilities to address an effective delivery of elastic chains of Virtual Network Functions. Preliminary results of prototype implementation and testing activities are also presented. The benefits for Network Service Providers are also described that derive from the adaptive network service provisioning in a multi-provider environment through the orchestration of computing and networking services to provide end users with an enhanced service experience.
Estimation of State of Charge of Lead Acid Battery using Radial Basis Function
Sauradip, M; Sinha, SK; K Muthukumar
2001-01-01
A Radial Basis Function based learning system method has been proposed for estimation of State of Charge (SOC) of Lead Acid Battery. Coulomb metric method is used for SOC estimation with correction factor computed by Radial Basis Function Method. Radial basis function based technique is used for learning battery performance variation with time and other parameters. Experimental results are included.
Hierarchical modularity in human brain functional networks
Meunier, D; Fornito, A; Ersche, K D; Bullmore, E T; 10.3389/neuro.11.037.2009
2010-01-01
The idea that complex systems have a hierarchical modular organization originates in the early 1960s and has recently attracted fresh support from quantitative studies of large scale, real-life networks. Here we investigate the hierarchical modular (or "modules-within-modules") decomposition of human brain functional networks, measured using functional magnetic resonance imaging (fMRI) in 18 healthy volunteers under no-task or resting conditions. We used a customized template to extract networks with more than 1800 regional nodes, and we applied a fast algorithm to identify nested modular structure at several hierarchical levels. We used mutual information, 0 < I < 1, to estimate the similarity of community structure of networks in different subjects, and to identify the individual network that is most representative of the group. Results show that human brain functional networks have a hierarchical modular organization with a fair degree of similarity between subjects, I=0.63. The largest 5 modules at ...
An Adaptive Complex Network Model for Brain Functional Networks
Gomez Portillo, Ignacio J.; Gleiser, Pablo M.
2009-01-01
Brain functional networks are graph representations of activity in the brain, where the vertices represent anatomical regions and the edges their functional connectivity. These networks present a robust small world topological structure, characterized by highly integrated modules connected sparsely by long range links. Recent studies showed that other topological properties such as the degree distribution and the presence (or absence) of a hierarchical structure are not robust, and show diffe...
A universal formula for network functions
DEFF Research Database (Denmark)
Skelboe, Stig
1975-01-01
A linear electrical network can be described in a convenient way by means of the node equations. This letter presents a universal formula which expresses any network function as the quotient of two determinants. The determinants belong to matrices derived from the indefinite nodal admittance...
Advanced Functionalities for Highly Reliable Optical Networks
DEFF Research Database (Denmark)
An, Yi
This thesis covers two research topics concerning optical solutions for networks e.g. avionic systems. One is to identify the applications for silicon photonic devices for cost-effective solutions in short-range optical networks. The other one is to realise advanced functionalities in order to...
Main concept of local area network protection on the basis of the SAAM 'TRAFFIC'
International Nuclear Information System (INIS)
In our previous paper we developed a system for acquisition, analysis and management of the network traffic (SAAM 'Traffic') for a segment of the JINR local area computer network (JINR LAN). In our present work we consider well-known scenarios of attacks on local area networks and propose protection methods based on the SAAM 'Traffic'. Although the system for LAN protection is installed on a router computer, it is not analogous to the firewall scheme and, thus, it does not hinder the performance of distributed network applications. This provides a possibility to apply such an approach to GRID-technologies, where network protection on the firewall basis can not be basically used. (author)
From networks of protein interactions to networks of functional dependencies
Directory of Open Access Journals (Sweden)
Luciani Davide
2012-05-01
Full Text Available Abstract Background As protein-protein interactions connect proteins that participate in either the same or different functions, networks of interacting and functionally annotated proteins can be converted into process graphs of inter-dependent function nodes (each node corresponding to interacting proteins with the same functional annotation. However, as proteins have multiple annotations, the process graph is non-redundant, if only proteins participating directly in a given function are included in the related function node. Results Reasoning that topological features (e.g., clusters of highly inter-connected proteins might help approaching structured and non-redundant understanding of molecular function, an algorithm was developed that prioritizes inclusion of proteins into the function nodes that best overlap protein clusters. Specifically, the algorithm identifies function nodes (and their mutual relations, based on the topological analysis of a protein interaction network, which can be related to various biological domains, such as cellular components (e.g., peroxisome and cellular bud or biological processes (e.g., cell budding of the model organism S. cerevisiae. Conclusions The method we have described allows converting a protein interaction network into a non-redundant process graph of inter-dependent function nodes. The examples we have described show that the resulting graph allows researchers to formulate testable hypotheses about dependencies among functions and the underlying mechanisms.
Concept of the dealer-service network management on the system approach basis
Directory of Open Access Journals (Sweden)
Irina MAKAROVA
2011-01-01
Full Text Available In article the method of improvement of automobile service quality within the limits of a dealer-service network limits, by building of information-logistical system and feedback mechanism adjustment is considered. As operating influence application of the discounts` system calculated on the basis of forward orderings on spare parts arriving from the service centers is offered.
Abrupt structural transitions involving functionally optimal networks
Jarrett, T C; Fricker, M; Johnson, N F; Jarrett, Timothy C.; Ashton, Douglas J.; Fricker, Mark; Johnson, Neil F.
2005-01-01
We show analytically that abrupt structural transitions can arise in functionally optimal networks, driven by small changes in the level of transport congestion. Our findings are based on an exactly solvable model system which mimics a variety of biological and social networks. Our results offer an explanation as to why such diverse sets of network structures arise in Nature (e.g. fungi) under essentially the same environmental conditions. As a by-product of this work, we introduce a novel renormalization scheme involving `cost motifs' which describes analytically the average shortest path across multiple-ring-and-hub networks.
Functional connectivity and brain networks in schizophrenia
Lynall, Mary-Ellen; Bassett, Danielle S.; Kerwin, Robert; McKenna, Peter J.; Kitzbichler, Manfred; Müller, Ulrich; Bullmore, Ed
2010-01-01
Schizophrenia has often been conceived as a disorder of connectivity between components of large-scale brain networks. We tested this hypothesis by measuring aspects of both functional connectivity and functional network topology derived from resting state fMRI time series acquired at 72 cerebral regions over 17 minutes from 15 healthy volunteers (14 male, 1 female) and 12 people diagnosed with schizophrenia (10 male, 2 female). We investigated between-group differences in strength and divers...
Mapping functional connectivity in cellular networks
Buibas, Marius
2011-01-01
My thesis is a collection of theoretical and practical techniques for mapping functional or effective connectivity in cellular neuronal networks, at the cell scale. This is a challenging scale to work with, primarily because of the difficulty in labeling and measuring the activities of networks of cells. It is also important as it underlies behavior, function, and complex diseases. I present methods to measure and quantify the dynamic activities of cells using the optical flow technique, whic...
Fuzzy Functional Dependencies and Bayesian Networks
Institute of Scientific and Technical Information of China (English)
LIU WeiYi(刘惟一); SONG Ning(宋宁)
2003-01-01
Bayesian networks have become a popular technique for representing and reasoning with probabilistic information. The fuzzy functional dependency is an important kind of data dependencies in relational databases with fuzzy values. The purpose of this paper is to set up a connection between these data dependencies and Bayesian networks. The connection is done through a set of methods that enable people to obtain the most information of independent conditions from fuzzy functional dependencies.
Physiological basis, use and abuse of functional imaging
International Nuclear Information System (INIS)
Functional imaging in the contrast to conventional methods of nuclear medicine is defined. The importance of an isomorphic physiological model as a link between the physics of the test and the clinical problem is discussed. Clinical, physiological and mathematical criteria for use of computer assisted functional images are developed. (WU)
Constructing social networks on the basis of task and knowledge networks using WESTT
Stanton, Neville A.; Baber, Chris; Houghton, Robert J.
2007-01-01
In this paper, we propose that it is possible to combine conventional Human Factors approaches to task analysis and crew models to the study of covert networks. The intention is to add to the debate and methods that surround the study of covert networks. We suggest that it is possible to use Human Factors methods to both inform Social Network Analysis approaches, and to provide representations by which intelligence can be shared and explored. The paper is couched in terms of the WESTT approac...
Hybrid model decomposition of speech and noise in a radial basis function neural model framework
DEFF Research Database (Denmark)
Sørensen, Helge Bjarup Dissing; Hartmann, Uwe
1994-01-01
The aim of the paper is to focus on a new approach to automatic speech recognition in noisy environments where the noise has either stationary or non-stationary statistical characteristics. The aim is to perform automatic recognition of speech in the presence of additive car noise. The technique...... applied is based on a combination of the hidden Markov model (HMM) decomposition method, for speech recognition in noise, developed by Varga and Moore (1990) from DRA and the hybrid (HMM/RBF) recognizer containing hidden Markov models and radial basis function (RBF) neural networks, developed by Singer...... and Lippmann (1992) from MIT Lincoln Lab. The present authors modified the hybrid recognizer to fit into the decomposition method to achieve high performance speech recognition in noisy environments. The approach has been denoted the hybrid model decomposition method and it provides an optimal method...
Functional network organization of the human brain
Power, Jonathan D.; Cohen, Alexander L.; Nelson, Steven M.; Wig, Gagan S.; Barnes, Kelly Anne; Church, Jessica A.; Vogel, Alecia C.; Laumann, Timothy O.; Miezin, Fran M.; Schlaggar, Bradley L.; Petersen, Steven E.
2011-01-01
Real-world complex systems may be mathematically modeled as graphs, revealing properties of the system. Here we study graphs of functional brain organization in healthy adults using resting state functional connectivity MRI. We propose two novel brain-wide graphs, one of 264 putative functional areas, the other a modification of voxelwise networks that eliminates potentially artificial short-distance relationships. These graphs contain many subgraphs in good agreement with known functional br...
DEFF Research Database (Denmark)
Darden, Safi-Kirstine; Steffensen, Lise K.; Dabelsteen, Torben
2008-01-01
In species where individuals are widely spaced instantaneous signals cannot readily form the basis of communication networks, that is several individuals within signalling range of each other. However, markings, signals that remain in the environment after the signaller has left, may fulfil this...... role. In this study, we have investigated the possible function of swift fox, Vulpes velox, latrines, collections of scat, urine and possibly other secretions, in a communication network context. We found that latrines had higher frequencies of occurrence inside the core (defined as the 50% kernel....... That is, they function in territory defence in the exclusive areas of a pair's core and as centres for information exchange in the outer areas of a pair's home-range that overlap with neighbouring foxes. We discuss the possible information content of latrines and the possibility of latrines forming the...
OPTIMIZATION OF CUTTING PARAMETERS ON THE BASIS OF SEMANTIC NETWORK USAGE
Directory of Open Access Journals (Sweden)
V. M. Pashkevich
2011-01-01
Full Text Available The paper considers problems on accuracy assurance of machine component cutting while using edge tools. An approach based on artificial intelligence technologies in particular technologies of functional semantic networks. The paper analyzes a possibility to apply functional semantic networks for optimization of cutting parameters. An intellectual system intended for solution of applied problems is described in the paper. The paper reveals a system structure and an example for setting optimal cutting speed is cited in the paper.
Individual diversity of functional brain network economy.
Hahn, Andreas; Kranz, Georg S; Sladky, Ronald; Ganger, Sebastian; Windischberger, Christian; Kasper, Siegfried; Lanzenberger, Rupert
2015-04-01
On average, brain network economy represents a trade-off between communication efficiency, robustness, and connection cost, although an analogous understanding on an individual level is largely missing. Evaluating resting-state networks of 42 healthy participants with seven Tesla functional magnetic resonance imaging and graph theory revealed that not even half of all possible connections were common across subjects. The strongest similarities among individuals were observed for interhemispheric and/or short-range connections, which may relate to the essential feature of the human brain to develop specialized systems within each hemisphere. Despite this marked variability in individual network architecture, all subjects exhibited equal small-world properties. Furthermore, interdependency between four major network economy metrics was observed across healthy individuals. The characteristic path length was associated with the clustering coefficient (peak correlation r=0.93), the response to network attacks (r=-0.97), and the physical connection cost in three-dimensional space (r=-0.62). On the other hand, clustering was negatively related to attack response (r=-0.75) and connection cost (r=-0.59). Finally, increased connection cost was associated with better response to attacks (r=0.65). This indicates that functional brain networks with high global information transfer also exhibit strong network resilience. However, it seems that these advantages come at the cost of decreased local communication efficiency and increased physical connection cost. Except for wiring length, the results were replicated on a subsample at three Tesla (n=20). These findings highlight the finely tuned interrelationships between different parameters of brain network economy. Moreover, the understanding of the individual diversity of functional brain network economy may provide further insights in the vulnerability to mental and neurological disorders. PMID:25411715
Physiologic Basis for Improved Pulmonary Function after Lung Volume Reduction
Fessler, Henry E.; Scharf, Steven M; Ingenito, Edward P.; McKenna, Robert J.; Sharafkhaneh, Amir
2008-01-01
It is not readily apparent how pulmonary function could be improved by resecting portions of the lung in patients with emphysema. In emphysema, elevation in residual volume relative to total lung capacity reduces forced expiratory volumes, increases inspiratory effort, and impairs inspiratory muscle mechanics. Lung volume reduction surgery (LVRS) better matches the size of the lungs to the size of the thorax containing them. This restores forced expiratory volumes and the mechanical advantage...
Design Optimization of Centrifugal Pump Using Radial Basis Function Metamodels
Yu Zhang; Jinglai Wu; Yunqing Zhang; Liping Chen
2014-01-01
Optimization design of centrifugal pump is a typical multiobjective optimization (MOO) problem. This paper presents an MOO design of centrifugal pump with five decision variables and three objective functions, and a set of centrifugal pumps with various impeller shroud shapes are studied by CFD numerical simulations. The important performance indexes for centrifugal pump such as head, efficiency, and required net positive suction head (NPSHr) are investigated, and the results indicate that th...
Functional network inference of the suprachiasmatic nucleus.
Abel, John H; Meeker, Kirsten; Granados-Fuentes, Daniel; St John, Peter C; Wang, Thomas J; Bales, Benjamin B; Doyle, Francis J; Herzog, Erik D; Petzold, Linda R
2016-04-19
In the mammalian suprachiasmatic nucleus (SCN), noisy cellular oscillators communicate within a neuronal network to generate precise system-wide circadian rhythms. Although the intracellular genetic oscillator and intercellular biochemical coupling mechanisms have been examined previously, the network topology driving synchronization of the SCN has not been elucidated. This network has been particularly challenging to probe, due to its oscillatory components and slow coupling timescale. In this work, we investigated the SCN network at a single-cell resolution through a chemically induced desynchronization. We then inferred functional connections in the SCN by applying the maximal information coefficient statistic to bioluminescence reporter data from individual neurons while they resynchronized their circadian cycling. Our results demonstrate that the functional network of circadian cells associated with resynchronization has small-world characteristics, with a node degree distribution that is exponential. We show that hubs of this small-world network are preferentially located in the central SCN, with sparsely connected shells surrounding these cores. Finally, we used two computational models of circadian neurons to validate our predictions of network structure. PMID:27044085
Functional network inference of the suprachiasmatic nucleus
Energy Technology Data Exchange (ETDEWEB)
Abel, John H.; Meeker, Kirsten; Granados-Fuentes, Daniel; St. John, Peter C.; Wang, Thomas J.; Bales, Benjamin B.; Doyle, Francis J.; Herzog, Erik D.; Petzold, Linda R.
2016-04-04
In the mammalian suprachiasmatic nucleus (SCN), noisy cellular oscillators communicate within a neuronal network to generate precise system-wide circadian rhythms. Although the intracellular genetic oscillator and intercellular biochemical coupling mechanisms have been examined previously, the network topology driving synchronization of the SCN has not been elucidated. This network has been particularly challenging to probe, due to its oscillatory components and slow coupling timescale. In this work, we investigated the SCN network at a single-cell resolution through a chemically induced desynchronization. We then inferred functional connections in the SCN by applying the maximal information coefficient statistic to bioluminescence reporter data from individual neurons while they resynchronized their circadian cycling. Our results demonstrate that the functional network of circadian cells associated with resynchronization has small-world characteristics, with a node degree distribution that is exponential. We show that hubs of this small-world network are preferentially located in the central SCN, with sparsely connected shells surrounding these cores. Finally, we used two computational models of circadian neurons to validate our predictions of network structure.
Polarized DIS Structure Functions from Neural Networks
International Nuclear Information System (INIS)
We present a parametrization of polarized Deep-Inelastic-Scattering (DIS) structure functions based on Neural Networks. The parametrization provides a bias-free determination of the probability measure in the space of structure functions, which retains information on experimental errors and correlations. As an example we discuss the application of this method to the study of the structure function g1p(x,Q2)
Brown, James; Carrington, Tucker
2016-06-01
In this paper we show that it is possible to use an iterative eigensolver in conjunction with Halverson and Poirier's symmetrized Gaussian (SG) basis [T. Halverson and B. Poirier, J. Chem. Phys. 137, 224101 (2012)] to compute accurate vibrational energy levels of molecules with as many as five atoms. This is done, without storing and manipulating large matrices, by solving a regular eigenvalue problem that makes it possible to exploit direct-product structure. These ideas are combined with a new procedure for selecting which basis functions to use. The SG basis we work with is orders of magnitude smaller than the basis made by using a classical energy criterion. We find significant convergence errors in previous calculations with SG bases. For sum-of-product Hamiltonians, SG bases large enough to compute accurate levels are orders of magnitude larger than even simple pruned bases composed of products of harmonic oscillator functions.
The molecular basis for centromere identity and function.
McKinley, Kara L; Cheeseman, Iain M
2016-01-01
The centromere is the region of the chromosome that directs its segregation in mitosis and meiosis. Although the functional importance of the centromere has been appreciated for more than 130 years, elucidating the molecular features and properties that enable centromeres to orchestrate chromosome segregation is an ongoing challenge. Most eukaryotic centromeres are defined epigenetically and require the presence of nucleosomes containing the histone H3 variant centromere protein A (CENP-A; also known as CENH3). Ongoing work is providing important molecular insights into the central requirements for centromere identity and propagation, and the mechanisms by which centromeres recruit kinetochores to connect to spindle microtubules. PMID:26601620
Avian magnetic compass: Its functional properties and physical basis
Directory of Open Access Journals (Sweden)
Roswitha WILTSCHKO, Wolfgang WILTSCHKO
2010-06-01
Full Text Available The avian magnetic compass was analyzed in bird species of three different orders – Passeriforms, Columbiforms and Galliforms – and in three different behavioral contexts, namely migratory orientation, homing and directional conditioning. The respective findings indicate similar functional properties: it is an inclination compass that works only within a functional window around the ambient magnetic field intensity; it tends to be lateralized in favor of the right eye, and it is wavelength-dependent, requiring light from the short-wavelength range of the spectrum. The underlying physical mechanisms have been identified as radical pair processes, spin-chemical reactions in specialized photopigments. The iron-based receptors in the upper beak do not seem to be involved. The existence of the same type of magnetic compass in only very distantly related bird species suggests that it may have been present already in the common ancestors of all modern birds, where it evolved as an all-purpose compass mechanism for orientation within the home range [Current Zoology 56 (3: 265–276, 2010].
International Nuclear Information System (INIS)
The boiler is a very important component of a thermal power plant, and its efficient operation requires continuous online information of various relevant parameters. Furnace exit gas temperature (FEGT) is one such important design/operating parameter. Knowledge of FEGT is not only useful for design of convective heating surface but also helpful for operating actions and decision making. Its online information ensures improvement in economic benefit of the power plant. Non-availability of FEGT on the operator desk greatly limits efficient operation. In this study, a novel method of estimating FEGT using neural network is presented. The training data are first generated by calculating FEGT using heat balances through various heat exchangers. Prediction accuracy and fast response are major advantages in using neural network for estimating FEGT for operator information. Two types of feed forward neural modeling networks, radial basis function and back-propagation network, were applied and compared based on their network simplicity, model building and prediction accuracy. Results are verified on practical data obtained from a 210 MW boiler of a thermal power plant
Generating functions for q-Bernstein, q-Meyer-Konig-Zeller and q-Beta basis
Gupta, Vijay; Kim, Taekyun; Choi, Jongsung; Kim, Young-Hee
2010-01-01
The present paper deals with the q-analogue of Bernstein, Meyer-Konig-Zeller and Beta operators. Here we estimate the generating functions for q-Bernstein, q-Meyer-Konig-Zeller and q-Beta basis functions.
Hierarchical modularity in human brain functional networks
Directory of Open Access Journals (Sweden)
Renaud Lambiotte
2009-10-01
Full Text Available The idea that complex systems have a hierarchical modular organization originates in the early 1960s and has recently attracted fresh support from quantitative studies of large scale, real-life networks. Here we investigate the hierarchical modular (or “modules-within-modules” decomposition of human brain functional networks, measured using functional magnetic resonance imaging (fMRI in 18 healthy volunteers under no-task or resting conditions. We used a customized template to extract networks with more than 1800 regional nodes, and we applied a fast algorithm to identify nested modular structure at several hierarchical levels. We used mutual information, 0 < I < 1, to estimate the similarity of community structure of networks in different subjects, and to identify the individual network that is most representative of the group. Results show that human brain functional networks have a hierarchical modular organization with a fair degree of similarity between subjects, I=0.63. The largest 5 modules at the highest level of the hierarchy were medial occipital, lateral occipital, central, parieto-frontal and fronto-temporal systems; occipital modules demonstrated less sub-modular organization than modules comprising regions of multimodal association cortex. Connector nodes and hubs, with a key role in inter-modular connectivity, were also concentrated in association cortical areas. We conclude that methods are available for hierarchical modular decomposition of large numbers of high resolution brain functional networks using computationally expedient algorithms. This could enable future investigations of Simon's original hypothesis that hierarchy or near-decomposability of physical symbol systems is a critical design feature for their fast adaptivity to changing environmental conditions.
Schwenke, David W.; Truhlar, Donald G.
1990-01-01
The Generalized Newton Variational Principle for 3D quantum mechanical reactive scattering is briefly reviewed. Then three techniques are described which improve the efficiency of the computations. First, the fact that the Hamiltonian is Hermitian is used to reduce the number of integrals computed, and then the properties of localized basis functions are exploited in order to eliminate redundant work in the integral evaluation. A new type of localized basis function with desirable properties is suggested. It is shown how partitioned matrices can be used with localized basis functions to reduce the amount of work required to handle the complex boundary conditions. The new techniques do not introduce any approximations into the calculations, so they may be used to obtain converged solutions of the Schroedinger equation.
Boese, A D; Martin, J M L; Klopper, Wim; Martin, Jan M. L.
2005-01-01
In a previous contribution (Mol. Phys. {\\bf 103}, xxxx, 2005), we established the suitability of density functional theory (DFT) for the calculation of molecular anharmonic force fields. In the present work, we have assessed a wide variety of basis sets and exchange-correlation functionals for harmonic and fundamental frequencies, equilibrium and ground-state rotational constants, and thermodynamic functions beyond the RRHO (rigid rotor-harmonic oscillator) approximation. The fairly good performance of double-zeta plus polarization basis sets for frequencies results from an error compensation between basis set incompleteness and the intrinsic error of exchange-correlation functionals. Triple-zeta plus polarization basis sets are recommended, with an additional high-exponent $d$ function on second-row atoms. All conventional hybrid GGA functionals perform about equally well: high-exchange hybrid GGA and meta-GGA functionals designed for kinetics yield poor results, with the exception of of the very recently de...
Scoring Function Based on Weighted Residue Network
Directory of Open Access Journals (Sweden)
Shan Chang
2011-12-01
Full Text Available Molecular docking is an important method for the research of protein-protein interaction and recognition. A protein can be considered as a network when the residues are treated as its nodes. With the contact energy between residues as link weight, a weighted residue network is constructed in this paper. Two weighted parameters (strength and weighted average nearest neighbors’ degree are introduced into this model at the same time. The stability of a protein is characterized by its strength. The global topological properties of the protein-protein complex are reflected by the weighted average nearest neighbors’ degree. Based on this weighted network model and these two parameters, a new docking scoring function is proposed in this paper. The scoring and ranking for 42 systems’ bound and unbounded docking results are performed with this new scoring function. Comparing the results obtained from this new scoring function with that from the pair potentials scoring function, we found that this new scoring function has a similar performance to the pair potentials on some items, and this new scoring function can get a better success rate. The calculation of this new scoring function is easy, and the result of its scoring and ranking is acceptable. This work can help us better understand the mechanisms of protein-protein interactions and recognition.
Schizophrenia classification using functional network features
Rish, Irina; Cecchi, Guillermo A.; Heuton, Kyle
2012-03-01
This paper focuses on discovering statistical biomarkers (features) that are predictive of schizophrenia, with a particular focus on topological properties of fMRI functional networks. We consider several network properties, such as node (voxel) strength, clustering coefficients, local efficiency, as well as just a subset of pairwise correlations. While all types of features demonstrate highly significant statistical differences in several brain areas, and close to 80% classification accuracy, the most remarkable results of 93% accuracy are achieved by using a small subset of only a dozen of most-informative (lowest p-value) correlation features. Our results suggest that voxel-level correlations and functional network features derived from them are highly informative about schizophrenia and can be used as statistical biomarkers for the disease.
Distributed Function Calculation over Noisy Networks
Directory of Open Access Journals (Sweden)
Zhidun Zeng
2016-01-01
Full Text Available Considering any connected network with unknown initial states for all nodes, the nearest-neighbor rule is utilized for each node to update its own state at every discrete-time step. Distributed function calculation problem is defined for one node to compute some function of the initial values of all the nodes based on its own observations. In this paper, taking into account uncertainties in the network and observations, an algorithm is proposed to compute and explicitly characterize the value of the function in question when the number of successive observations is large enough. While the number of successive observations is not large enough, we provide an approach to obtain the tightest possible bounds on such function by using linear programing optimization techniques. Simulations are provided to demonstrate the theoretical results.
Deep networks for motor control functions
Directory of Open Access Journals (Sweden)
Max eBerniker
2015-03-01
Full Text Available The motor system generates time-varying commands to move our limbs and body. Conventional descriptions of motor control and learning rely on dynamical representations of our body’s state (forward and inverse models, and control policies that must be integrated forward to generate feedforward time-varying commands; thus these are representations across space, but not time. Here we examine a new approach that directly represents both time-varying commands and the resulting state trajectories with a function; a representation across space and time. Since the output of this function includes time, it necessarily requires more parameters than a typical dynamical model. To avoid the problems of local minima these extra parameters introduce, we exploit recent advances in machine learning to build our function using a stacked autoencoder, or deep network. With initial and target states as inputs, this deep network can be trained to output an accurate temporal profile of the optimal command and state trajectory for a point-to-point reach of a nonlinear limb model, even when influenced by varying force fields. In a manner that mirrors motor babble, the network can also teach itself to learn through trial and error. Lastly, we demonstrate how this network can learn to optimize a cost objective. This functional approach to motor control is a sharp departure from the standard dynamical approach, and may offer new insights into the neural implementation of motor control.
Deep networks for motor control functions.
Berniker, Max; Kording, Konrad P
2015-01-01
The motor system generates time-varying commands to move our limbs and body. Conventional descriptions of motor control and learning rely on dynamical representations of our body's state (forward and inverse models), and control policies that must be integrated forward to generate feedforward time-varying commands; thus these are representations across space, but not time. Here we examine a new approach that directly represents both time-varying commands and the resulting state trajectories with a function; a representation across space and time. Since the output of this function includes time, it necessarily requires more parameters than a typical dynamical model. To avoid the problems of local minima these extra parameters introduce, we exploit recent advances in machine learning to build our function using a stacked autoencoder, or deep network. With initial and target states as inputs, this deep network can be trained to output an accurate temporal profile of the optimal command and state trajectory for a point-to-point reach of a non-linear limb model, even when influenced by varying force fields. In a manner that mirrors motor babble, the network can also teach itself to learn through trial and error. Lastly, we demonstrate how this network can learn to optimize a cost objective. This functional approach to motor control is a sharp departure from the standard dynamical approach, and may offer new insights into the neural implementation of motor control. PMID:25852530
Affinely Recursive Functions and Neural Networks
Czech Academy of Sciences Publication Activity Database
Kůrková, Věra; Kainen, P.C.
Atlanta : Georgia Institute of Technology, 1994 - ( Ames , W.), s. 776-779 [IMACS World Congress /14./. Atlanta (US), 11.07.1994-15.07.1994] R&D Projects: GA AV ČR IA23057; GA ČR GA201/93/0427 Keywords : neural networks * affinely recursive functions
Dynamic functional network connectivity using distance correlation
Rudas, Jorge; Guaje, Javier; Demertzi, Athena; Heine, Lizette; Tshibanda, Luaba; Soddu, Andrea; Laureys, Steven; Gómez, Francisco
2015-01-01
Investigations about the intrinsic brain organization in resting-state are critical for the understanding of healthy, pathological and pharmacological cerebral states. Recent studies on fMRI suggest that resting state activity is organized on large scale networks of coordinated activity, in the so called, Resting State Networks (RSNs). The assessment of the interactions among these functional networks plays an important role for the understanding of different brain pathologies. Current methods to quantify these interactions commonly assume that the underlying coordination mechanisms are stationary and linear through the whole recording of the resting state phenomena. Nevertheless, recent evidence suggests that rather than stationary, these mechanisms may exhibit a rich set of time-varying repertoires. In addition, these approaches do not consider possible non-linear relationships maybe linked to feed-back communication mechanisms between RSNs. In this work, we introduce a novel approach for dynamical functional network connectivity for functional magnetic resonance imaging (fMRI) resting activity, which accounts for non-linear dynamic relationships between RSNs. The proposed method is based on a windowed distance correlations computed on resting state time-courses extracted at single subject level. We showed that this strategy is complementary to the current approaches for dynamic functional connectivity and will help to enhance the discrimination capacity of patients with disorder of consciousness.
Computational Exploration of the Biological Basis of Black-Scholes Expected Utility Function
Sukanto Bhattacharya; Kuldeep Kumar
2007-01-01
It has often been argued that there exists an underlying biological basis of utility functions. Taking this line of argument a step further in this paper, we have aimed to computationally demonstrate the biological basis of the Black-Scholes functional form as applied to classical option pricing and hedging theory. The evolutionary optimality of the classical Black-Scholes function has been computationally established by means of a haploid genetic algorithm model. The objective was to minimiz...
Computational Exploration of the Biological Basis of Black-Scholes Expected Utility Function
Kuldeep Kumar; Sukanto Bhattacharya
2007-01-01
It has often been argued that there exists an underlying biological basis of utility functions. Taking this line of argument a step further in this paper, we have aimed to computationally demonstrate the biological basis of the Black-Scholes functional form as applied to classical option pricing and hedging theory. The evolutionary optimality of the classical Black-Scholes function has been computationally established by means of a haploid genetic algorithm model. The objective was to mi...
Free vibrations and buckling analysis of laminated plates by oscillatory radial basis functions
Neves, A. M. A.; Ferreira, A. J. M.
2015-12-01
In this paper the free vibrations and buckling analysis of laminated plates is performed using a global meshless method. A refined version of Kant's theorie which accounts for transverse normal stress and through-the-thickness deformation is used. The innovation is the use of oscillatory radial basis functions. Numerical examples are performed and results are presented and compared to available references. Such functions proved to be an alternative to the tradicional nonoscillatory radial basis functions.
Functional optimization of the arterial network
Mauroy, Benjamin
2014-01-01
We build an evolutionary scenario that explains how some crucial physiological constraints in the arterial network of mammals - i.e. hematocrit, vessels diameters and arterial pressure drops - could have been selected by evolution. We propose that the arterial network evolved while being constrained by its function as an organ. To support this hypothesis, we focus our study on one of the main function of blood network: oxygen supply to the organs. We consider an idealized organ with a given oxygen need and we optimize blood network geometry and hematocrit with the constraint that it must fulfill the organ oxygen need. Our model accounts for the non-Newtonian behavior of blood, its maintenance cost and F\\aa hr\\ae us effects (decrease in average concentration of red blood cells as the vessel diameters decrease). We show that the mean shear rates (relative velocities of fluid layers) in the tree vessels follow a scaling law related to the multi-scale property of the tree network, and we show that this scaling la...
Efficient basis for the Dicke model: II. Wave function convergence and excited states
International Nuclear Information System (INIS)
An extended bosonic coherent basis has been shown by Chen et al (2008 Phys. Rev. A 78 051801) and Liu T et al (2009 Phys. Rev. A 80 165308) to provide numerically exact solutions of the finite-size Dicke model. The advantages in employing this basis, as compared with the photon number (Fock) basis, are exhibited to be valid for a large region of the Hamiltonian parameter space and many excited states by analyzing the convergence in the wave functions. (paper)
Multiscale finite element methods for high-contrast problems using local spectral basis functions
Efendiev, Yalchin
2011-02-01
In this paper we study multiscale finite element methods (MsFEMs) using spectral multiscale basis functions that are designed for high-contrast problems. Multiscale basis functions are constructed using eigenvectors of a carefully selected local spectral problem. This local spectral problem strongly depends on the choice of initial partition of unity functions. The resulting space enriches the initial multiscale space using eigenvectors of local spectral problem. The eigenvectors corresponding to small, asymptotically vanishing, eigenvalues detect important features of the solutions that are not captured by initial multiscale basis functions. Multiscale basis functions are constructed such that they span these eigenfunctions that correspond to small, asymptotically vanishing, eigenvalues. We present a convergence study that shows that the convergence rate (in energy norm) is proportional to (H/Λ*)1/2, where Λ* is proportional to the minimum of the eigenvalues that the corresponding eigenvectors are not included in the coarse space. Thus, we would like to reach to a larger eigenvalue with a smaller coarse space. This is accomplished with a careful choice of initial multiscale basis functions and the setup of the eigenvalue problems. Numerical results are presented to back-up our theoretical results and to show higher accuracy of MsFEMs with spectral multiscale basis functions. We also present a hierarchical construction of the eigenvectors that provides CPU savings. © 2010.
Gaussian continuum basis functions for calculating high-harmonic generation spectra
Coccia, Emanuele; Labeye, Marie; Caillat, Jérémie; Taieb, Richard; Toulouse, Julien; Luppi, Eleonora
2016-01-01
We explore the computation of high-harmonic generation spectra by means of Gaussian basis sets in approaches propagating the time-dependent Schr{\\"o}dinger equation. We investigate the efficiency of Gaussian functions specifically designed for the description of the continuum proposed by Kaufmann et al. [ J. Phys. B 22 , 2223 (1989) ]. We assess the range of applicability of this approach by studying the hydrogen atom , i. e. the simplest atom for which "exact" calculations on a grid can be performed. We notably study the effect of increasing the basis set cardinal number , the number of diffuse basis functions , and the number of Gaussian pseudo-continuum basis functions for various laser parameters. Our results show that the latter significantly improve the description of the low-lying continuum states , and provide a satisfactory agreement with grid calculations for laser wavelengths $\\lambda$0 = 800 and 1064 nm. The Kaufmann continuum functions therefore appear as a promising way of constructing Gaussian ...
Olga V. Avseeva; Yuri B. Tebekin
2011-01-01
The article is devoted to the problem of the quality management for multiphase processes on the basis of the probabilistic approach. Method with continuous response functions is offered from the application of the method of Lagrange multipliers.
Directory of Open Access Journals (Sweden)
Yuri B. Tebekin
2011-11-01
Full Text Available The article is devoted to the problem of the quality management for multiphase processes on the basis of the probabilistic approach. Method with continuous response functions is offered from the application of the method of Lagrange multipliers.
Arithmetic functions in torus and tree networks
Bhanot, Gyan; Blumrich, Matthias A.; Chen, Dong; Gara, Alan G.; Giampapa, Mark E.; Heidelberger, Philip; Steinmacher-Burow, Burkhard D.; Vranas, Pavlos M.
2007-12-25
Methods and systems for performing arithmetic functions. In accordance with a first aspect of the invention, methods and apparatus are provided, working in conjunction of software algorithms and hardware implementation of class network routing, to achieve a very significant reduction in the time required for global arithmetic operation on the torus. Therefore, it leads to greater scalability of applications running on large parallel machines. The invention involves three steps in improving the efficiency and accuracy of global operations: (1) Ensuring, when necessary, that all the nodes do the global operation on the data in the same order and so obtain a unique answer, independent of roundoff error; (2) Using the topology of the torus to minimize the number of hops and the bidirectional capabilities of the network to reduce the number of time steps in the data transfer operation to an absolute minimum; and (3) Using class function routing to reduce latency in the data transfer. With the method of this invention, every single element is injected into the network only once and it will be stored and forwarded without any further software overhead. In accordance with a second aspect of the invention, methods and systems are provided to efficiently implement global arithmetic operations on a network that supports the global combining operations. The latency of doing such global operations are greatly reduced by using these methods.
Fire Risk Assessment of Some Indian Coals Using Radial Basis Function (RBF) Technique
Nimaje, Devidas; Tripathy, Debi Prasad
2016-03-01
Fires, whether surface or underground, pose serious and environmental problems in the global coal mining industry. It is causing huge loss of coal due to burning and loss of lives, sterilization of coal reserves and environmental pollution. Most of the instances of coal mine fires happening worldwide are mainly due to the spontaneous combustion. Hence, attention must be paid to take appropriate measures to prevent occurrence and spread of fire. In this paper, to evaluate the different properties of coals for fire risk assessment, forty-nine in situ coal samples were collected from major coalfields of India. Intrinsic properties viz. proximate and ultimate analysis; and susceptibility indices like crossing point temperature, flammability temperature, Olpinski index and wet oxidation potential method of Indian coals were carried out to ascertain the liability of coal to spontaneous combustion. Statistical regression analysis showed that the parameters of ultimate analysis provide significant correlation with all investigated susceptibility indices as compared to the parameters of proximate analysis. Best correlated parameters (ultimate analysis) were used as inputs to the radial basis function network model. The model revealed that Olpinski index can be used as a reliable method to assess the liability of Indian coals to spontaneous combustion.
A Frame of Intrusion Detection Learning System Utilizing Radial Basis Function
Directory of Open Access Journals (Sweden)
S.Selvakani Kandeeban
2012-02-01
Full Text Available The process of monitoring the events that occur in a computer system or network and analyzing them for signs of intrusion is known as Intrusion Detection System (IDS. Detection ability of most of the IDS are limited to known attack patterns; hence new signatures for novel attacks can be troublesome, time consuming and has high false alarm rate. To achieve this, system was trained and tested with known and unknown patterns with the help of Radial Basis Functions (RBF. KDD 99 IDE (Knowledge Discovery in Databases Intrusion Detection Evaluation data set was used for training and testing. The IDS is supposed to distinguish normal traffic from intrusions and to classify them into four classes: DoS, probe, R2L and U2R. The dataset is quite unbalanced, with 79% of the traffic belonging to the DoS category, 19% is normal traffic and less than 2% constitute the other three categories. The usefulness of the data set used for experimental evaluation has been demonstrated. The different metrics available for the evaluation of IDS were also introduced. Experimental evaluations were shown that the proposed methods were having the capacity of detecting a significant percentage ofrate and new attacks.
International Nuclear Information System (INIS)
Full text: We show that a suitable set of coherent basis states placed on a discrete hexagonal grid can be used to numerically very accurately represent general quantum states in a memory efficient way. Adding an algorithm for dynamic basis adaptation allows highly accurate Quantum Monte Carlo wave function simulations with small basis sets. At the example of the intricate nonlinear dynamics of an optical parametric oscillator around threshold, we demonstrate that this approach yields accurate time dependent solutions with a substantially smaller basis sets than required for a photon number basis. Above threshold the adaptive basis splits into localized subsets allowing efficient representation of bimodal or even more complex phase space distributions and directly yields an intuitive physical picture of the ongoing dynamics. (author)
Computationally efficient double hybrid density functional theory using dual basis methods
Byrd, Jason N
2015-01-01
We examine the application of the recently developed dual basis methods of Head-Gordon and co-workers to double hybrid density functional computations. Using the B2-PLYP, B2GP-PLYP, DSD-BLYP and DSD-PBEP86 density functionals, we assess the performance of dual basis methods for the calculation of conformational energy changes in C$_4$-C$_7$ alkanes and for the S22 set of noncovalent interaction energies. The dual basis methods, combined with resolution-of-the-identity second-order M{\\o}ller-Plesset theory, are shown to give results in excellent agreement with conventional methods at a much reduced computational cost.
Combustion monitoring of a water tube boiler using a discriminant radial basis network.
Sujatha, K; Pappa, N
2011-01-01
This research work includes a combination of Fisher's linear discriminant (FLD) analysis and a radial basis network (RBN) for monitoring the combustion conditions for a coal fired boiler so as to allow control of the air/fuel ratio. For this, two-dimensional flame images are required, which were captured with a CCD camera; the features of the images-average intensity, area, brightness and orientation etc of the flame-are extracted after preprocessing the images. The FLD is applied to reduce the n-dimensional feature size to a two-dimensional feature size for faster learning of the RBN. Also, three classes of images corresponding to different burning conditions of the flames have been extracted from continuous video processing. In this, the corresponding temperatures, and the carbon monoxide (CO) emissions and those of other flue gases have been obtained through measurement. Further, the training and testing of Fisher's linear discriminant radial basis network (FLDRBN), with the data collected, have been carried out and the performance of the algorithms is presented. PMID:20864104
Exponential-trigonometric basis functions in the Coulomb four-body problem
International Nuclear Information System (INIS)
Basis functions of a new type--specifically, exponential-trigonometric functions depending on all six interparticle distances--have been proposed for the Coulomb four-body problem. A method has been developed for computing nine-dimensional integrals determining the matrix elements of the Hamiltonian for a four-body system and featuring these functions. The efficiency of the approach that relies on the proposed basis functions has been tested by calculating the e+e-e+e-, p+μ-p+μ-, μ+e-μ+e-, and p+e-p+e- molecules
Experimental - trigonometric basis functions for the Coulomb-four-body problem
International Nuclear Information System (INIS)
Basis functions of a new type are proposed for the Coulomb four-body problem: the exponential-trigonometric functions depending on all the six interparticle separations. The method of computation of the nine-dimensional integrals determining the matrix elements of the four-body system energy operator with these functions is outlined. The efficiency of new basis functions is verified by computations of the e+e-e+e-, p+μ-p+μ-, μ+e-μ+e-, and p+e-p+e- molecules
On Functional Module Detection in Metabolic Networks
Directory of Open Access Journals (Sweden)
Ina Koch
2013-08-01
Full Text Available Functional modules of metabolic networks are essential for understanding the metabolism of an organism as a whole. With the vast amount of experimental data and the construction of complex and large-scale, often genome-wide, models, the computer-aided identification of functional modules becomes more and more important. Since steady states play a key role in biology, many methods have been developed in that context, for example, elementary flux modes, extreme pathways, transition invariants and place invariants. Metabolic networks can be studied also from the point of view of graph theory, and algorithms for graph decomposition have been applied for the identification of functional modules. A prominent and currently intensively discussed field of methods in graph theory addresses the Q-modularity. In this paper, we recall known concepts of module detection based on the steady-state assumption, focusing on transition-invariants (elementary modes and their computation as minimal solutions of systems of Diophantine equations. We present the Fourier-Motzkin algorithm in detail. Afterwards, we introduce the Q-modularity as an example for a useful non-steady-state method and its application to metabolic networks. To illustrate and discuss the concepts of invariants and Q-modularity, we apply a part of the central carbon metabolism in potato tubers (Solanum tuberosum as running example. The intention of the paper is to give a compact presentation of known steady-state concepts from a graph-theoretical viewpoint in the context of network decomposition and reduction and to introduce the application of Q-modularity to metabolic Petri net models.
On functional module detection in metabolic networks.
Koch, Ina; Ackermann, Jörg
2013-01-01
Functional modules of metabolic networks are essential for understanding the metabolism of an organism as a whole. With the vast amount of experimental data and the construction of complex and large-scale, often genome-wide, models, the computer-aided identification of functional modules becomes more and more important. Since steady states play a key role in biology, many methods have been developed in that context, for example, elementary flux modes, extreme pathways, transition invariants and place invariants. Metabolic networks can be studied also from the point of view of graph theory, and algorithms for graph decomposition have been applied for the identification of functional modules. A prominent and currently intensively discussed field of methods in graph theory addresses the Q-modularity. In this paper, we recall known concepts of module detection based on the steady-state assumption, focusing on transition-invariants (elementary modes) and their computation as minimal solutions of systems of Diophantine equations. We present the Fourier-Motzkin algorithm in detail. Afterwards, we introduce the Q-modularity as an example for a useful non-steady-state method and its application to metabolic networks. To illustrate and discuss the concepts of invariants and Q-modularity, we apply a part of the central carbon metabolism in potato tubers (Solanum tuberosum) as running example. The intention of the paper is to give a compact presentation of known steady-state concepts from a graph-theoretical viewpoint in the context of network decomposition and reduction and to introduce the application of Q-modularity to metabolic Petri net models. PMID:24958145
DEFF Research Database (Denmark)
Kim, Oleksiy S.; Meincke, Peter; Breinbjerg, Olav;
2007-01-01
applied to transform the VSIE into a system of linear equations. The higher-order MoM provides significant reduction in the number of unknowns in comparison with standard MoM formulations using low-order basis functions, such as RWG functions. Due to the orthogonal nature of the higher-order Legendre......The problem of electromagnetic scattering by composite metallic and dielectric objects is solved using the coupled volume-surface integral equation (VSIE). The method of moments (MoM) based on higher-order hierarchical Legendre basis functions and higher-order curvilinear geometrical elements is...
MESHLESS METHOD BASED ON COLLOCATION WITH CONSISTENT COMPACTLY SUPPORTED RADIAL BASIS FUNCTIONS
Institute of Scientific and Technical Information of China (English)
SONG Kangzu; ZHANG Xiong; LU Mingwan
2004-01-01
Based on our previous study, the accuracy of derivatives of interpolating functions are usually very poor near the boundary of domain when Compactly Supported Radial Basis Functions (CSRBFs) are used, so that it could result in significant error in solving partial differential equations with Neumann boundary conditions. To overcome this drawback, the Consistent Compactly Supported Radial Basis Functions (CCSRBFs) are developed, which satisfy the predetermined consistency conditions. Meshless method based on point collocation with CCSRBFs is developed for solving partial differential equations. Numerical studies show that the proposed method improves the accuracy of approximation significantly.
Nonlinear System Identification via Basis Functions Based Time Domain Volterra Model
Directory of Open Access Journals (Sweden)
Yazid Edwar
2014-07-01
Full Text Available This paper proposes basis functions based time domain Volterra model for nonlinear system identification. The Volterra kernels are expanded by using complex exponential basis functions and estimated via genetic algorithm (GA. The accuracy and practicability of the proposed method are then assessed experimentally from a scaled 1:100 model of a prototype truss spar platform. Identification results in time and frequency domain are presented and coherent functions are performed to check the quality of the identification results. It is shown that results between experimental data and proposed method are in good agreement.
Complex network perspective on structure and function of Staphylococcus aureus metabolic network
Indian Academy of Sciences (India)
L Ying; D W Ding
2013-02-01
With remarkable advances in reconstruction of genome-scale metabolic networks, uncovering complex network structure and function from these networks is becoming one of the most important topics in system biology. This work aims at studying the structure and function of Staphylococcus aureus (S. aureus) metabolic network by complex network methods. We first generated a metabolite graph from the recently reconstructed high-quality S. aureus metabolic network model. Then, based on `bow tie' structure character, we explain and discuss the global structure of S. aureus metabolic network. The functional significance, global structural properties, modularity and centrality analysis of giant strong component in S. aureus metabolic networks are studied.
Unconditioned responses and functional fear networks in human classical conditioning.
Linnman, Clas; Rougemont-Bücking, Ansgar; Beucke, Jan Carl; Zeffiro, Thomas A; Milad, Mohammed R
2011-08-01
Human imaging studies examining fear conditioning have mainly focused on the neural responses to conditioned cues. In contrast, the neural basis of the unconditioned response and the mechanisms by which fear modulates inter-regional functional coupling have received limited attention. We examined the neural responses to an unconditioned stimulus using a partial-reinforcement fear conditioning paradigm and functional MRI. The analysis focused on: (1) the effects of an unconditioned stimulus (an electric shock) that was either expected and actually delivered, or expected but not delivered, and (2) on how related brain activity changed across conditioning trials, and (3) how shock expectation influenced inter-regional coupling within the fear network. We found that: (1) the delivery of the shock engaged the red nucleus, amygdale, dorsal striatum, insula, somatosensory and cingulate cortices, (2) when the shock was expected but not delivered, only the red nucleus, the anterior insular and dorsal anterior cingulate cortices showed activity increases that were sustained across trials, and (3) psycho-physiological interaction analysis demonstrated that fear led to increased red nucleus coupling to insula but decreased hippocampus coupling to the red nucleus, thalamus and cerebellum. The hippocampus and the anterior insula may serve as hubs facilitating the switch between engagement of a defensive immediate fear network and a resting network. PMID:21377494
Graph theoretical analysis of resting magnetoencephalographic functional connectivity networks
Directory of Open Access Journals (Sweden)
Lindsay eRutter
2013-07-01
Full Text Available Complex networks have been observed to comprise small-world properties, believed to represent an optimal organization of local specialization and global integration of information processing at reduced wiring cost. Here, we applied magnitude squared coherence to resting magnetoencephalographic time series in reconstructed source space, acquired from controls and patients with schizophrenia, and generated frequency-dependent adjacency matrices modeling functional connectivity between virtual channels. After configuring undirected binary and weighted graphs, we found that all human networks demonstrated highly localized clustering and short characteristic path lengths. The most conservatively thresholded networks showed efficient wiring, with topographical distance between connected vertices amounting to one-third as observed in surrogate randomized topologies. Nodal degrees of the human networks conformed to a heavy-tailed exponentially truncated power-law, compatible with the existence of hubs, which included theta and alpha bilateral cerebellar tonsil, beta and gamma bilateral posterior cingulate, and bilateral thalamus across all frequencies. We conclude that all networks showed small-worldness, minimal physical connection distance, and skewed degree distributions characteristic of physically-embedded networks, and that these calculations derived from graph theoretical mathematics did not quantifiably distinguish between subject populations, independent of bandwidth. However, post-hoc measurements of edge computations at the scale of the individual vertex revealed trends of reduced gamma connectivity across the posterior medial parietal cortex in patients, an observation consistent with our prior resting activation study that found significant reduction of synthetic aperture magnetometry gamma power across similar regions. The basis of these small differences remains unclear.
International Nuclear Information System (INIS)
Although phase-space localized Gaussians are themselves poor basis functions, they can be used to effectively contract a discrete variable representation basis [A. Shimshovitz and D. J. Tannor, Phys. Rev. Lett. 109, 070402 (2012)]. This works despite the fact that elements of the Hamiltonian and overlap matrices labelled by discarded Gaussians are not small. By formulating the matrix problem as a regular (i.e., not a generalized) matrix eigenvalue problem, we show that it is possible to use an iterative eigensolver to compute vibrational energy levels in the Gaussian basis
Brown, James; Carrington, Tucker
2015-07-01
Although phase-space localized Gaussians are themselves poor basis functions, they can be used to effectively contract a discrete variable representation basis [A. Shimshovitz and D. J. Tannor, Phys. Rev. Lett. 109, 070402 (2012)]. This works despite the fact that elements of the Hamiltonian and overlap matrices labelled by discarded Gaussians are not small. By formulating the matrix problem as a regular (i.e., not a generalized) matrix eigenvalue problem, we show that it is possible to use an iterative eigensolver to compute vibrational energy levels in the Gaussian basis.
Representations of Boolean Functions by Perceptron Networks
Czech Academy of Sciences Publication Activity Database
Kůrková, Věra
Prague : Institute of Computer Science AS CR, 2014 - (Kůrková, V.; Bajer, L.; Peška, L.; Vojtáš, R.; Holeňa, M.; Nehéz, M.), s. 68-70 ISBN 978-80-87136-19-5. [ITAT 2014. European Conference on Information Technologies - Applications and Theory /14./. Demänovská dolina (SK), 25.09.2014-29.09.2014] R&D Projects: GA MŠk(CZ) LD13002 Institutional support: RVO:67985807 Keywords : perceptron networks * model complexity * Boolean functions Subject RIV: IN - Informatics, Computer Science
Boese, A. Daniel; Klopper, Wim; Martin, Jan M. L.
2005-01-01
In a previous contribution (Mol. Phys. {\\bf 103}, xxxx, 2005), we established the suitability of density functional theory (DFT) for the calculation of molecular anharmonic force fields. In the present work, we have assessed a wide variety of basis sets and exchange-correlation functionals for harmonic and fundamental frequencies, equilibrium and ground-state rotational constants, and thermodynamic functions beyond the RRHO (rigid rotor-harmonic oscillator) approximation. The fairly good perf...
Deterministic Function Computation with Chemical Reaction Networks
Chen, Ho-Lin; Soloveichik, David
2012-01-01
We study the deterministic computation of functions on tuples of natural numbers by chemical reaction networks (CRNs). CRNs have been shown to be efficiently Turing-universal when allowing for a small probability of error. CRNs that are guaranteed to converge on a correct answer, on the other hand, have been shown to decide only the semilinear predicates. We introduce the notion of function, rather than predicate, computation by representing the output of a function f:N^k --> N^l by a count of some molecular species, i.e., if the CRN starts with n_1,...,n_k molecules of some "input" species X_1,...,X_k, the CRN is guaranteed to converge to having f(n_1,...,n_k) molecules of the "output" species Y_1,...,Y_l. We show that a function f:N^k --> N^l is deterministically computed by a CRN if and only if its graph {(x,y) \\in N^k x N^l | f(x) = y} is a semilinear set. Finally, we show that each semilinear function f can be computed on input x in expected time O(polylog |x|).
Computer network defense through radial wave functions
Malloy, Ian J.
The purpose of this research is to synthesize basic and fundamental findings in quantum computing, as applied to the attack and defense of conventional computer networks. The concept focuses on uses of radio waves as a shield for, and attack against traditional computers. A logic bomb is analogous to a landmine in a computer network, and if one was to implement it as non-trivial mitigation, it will aid computer network defense. As has been seen in kinetic warfare, the use of landmines has been devastating to geopolitical regions in that they are severely difficult for a civilian to avoid triggering given the unknown position of a landmine. Thus, the importance of understanding a logic bomb is relevant and has corollaries to quantum mechanics as well. The research synthesizes quantum logic phase shifts in certain respects using the Dynamic Data Exchange protocol in software written for this work, as well as a C-NOT gate applied to a virtual quantum circuit environment by implementing a Quantum Fourier Transform. The research focus applies the principles of coherence and entanglement from quantum physics, the concept of expert systems in artificial intelligence, principles of prime number based cryptography with trapdoor functions, and modeling radio wave propagation against an event from unknown parameters. This comes as a program relying on the artificial intelligence concept of an expert system in conjunction with trigger events for a trapdoor function relying on infinite recursion, as well as system mechanics for elliptic curve cryptography along orbital angular momenta. Here trapdoor both denotes the form of cipher, as well as the implied relationship to logic bombs.
Plant geography upon the basis of functional traits: an example from eastern North American trees.
Swenson, Nathan G; Weiser, Michael D
2010-08-01
Plant geographers have sought for decades to describe and predict the geographic distribution of vegetation types on the basis of plant function and its relationship with the abiotic environment. Traditionally this has been accomplished using categorical representations such as plant functional types. Increasingly, plant functional ecologists have sought to refine categorical functional types via quantitative functional traits in order to understand the ecological implications of trade-offs in plant form and function. Fewer works have focused upon testing whether commonly measured functional traits enhance our understanding of plant biogeography broadly and the geographic distribution of vegetation types in particular. Here we combine a continental-scale forest inventory data set containing 18 111 plots with a plant functional trait data set to ask: (1) Is there a strong relationship between the abiotic environment and the distribution of functional trait values in forest inventory plots? And (2) can different Holdridge life zones be distinguished upon the basis of their functional trait distributions? The results show geographic patterns of functional trait distributions that are often strongly correlated with climate and also show that the Holdridge life zones in the study area can be differentiated using a combination of functional traits. PMID:20836445
Quantifying the connectivity of a network: The network correlation function method
Barzel, Baruch; 10.1103/PhysRevE.80.046104
2009-01-01
Networks are useful for describing systems of interacting objects, where the nodes represent the objects and the edges represent the interactions between them. The applications include chemical and metabolic systems, food webs as well as social networks. Lately, it was found that many of these networks display some common topological features, such as high clustering, small average path length (small world networks) and a power-law degree distribution (scale free networks). The topological features of a network are commonly related to the network's functionality. However, the topology alone does not account for the nature of the interactions in the network and their strength. Here we introduce a method for evaluating the correlations between pairs of nodes in the network. These correlations depend both on the topology and on the functionality of the network. A network with high connectivity displays strong correlations between its interacting nodes and thus features small-world functionality. We quantify the ...
Vestibular and Attractor Network Basis of the Head Direction Cell Signal in Subcortical Circuits
Directory of Open Access Journals (Sweden)
Benjamin J Clark
2012-03-01
Full Text Available Accurate navigation depends on a network of neural systems that encode the moment-to-moment changes in an animal’s directional orientation and location in space. Within this navigation system are head direction (HD cells, which fire persistently when an animal’s head is pointed in a particular direction (Sharp et al., 2001a; Taube, 2007. HD cells are widely thought to underlie an animal’s sense of spatial orientation, and research over the last 25+ years has revealed that this robust spatial signal is widely distributed across subcortical and cortical limbic areas. Much of this work has been directed at understanding the functional organization of the HD cell circuitry, and precisely how this signal is generated from sensory and motor systems. The purpose of the present review is to summarize some of the recent studies arguing that the HD cell circuit is largely processed in a hierarchical fashion, following a pathway involving the dorsal tegmental nuclei → lateral mammillary nuclei → anterior thalamus → parahippocampal and retrosplenial cortical regions. We also review recent work identifying “bursting” cellular activity in the HD cell circuit after lesions of the vestibular system, and relate these observations to the long held view that attractor network mechanisms underlie HD signal generation. Finally, we summarize the work to date suggesting that this network architecture may reside within the tegmento-mammillary circuit.
Barca, Giuseppe M J; Loos, Pierre-François; Gill, Peter M W
2016-04-12
Explicitly correlated F12 methods are becoming the first choice for high-accuracy molecular orbital calculations and can often achieve chemical accuracy with relatively small Gaussian basis sets. In most calculations, the many three- and four-electron integrals that formally appear in the theory are avoided through judicious use of resolutions of the identity (RI). However, for the intrinsic accuracy of the F12 wave function to not be jeopardized, the associated RI auxiliary basis set must be large. Here, inspired by the Head-Gordon-Pople and PRISM algorithms for two-electron integrals, we present an algorithm to directly compute three-electron integrals over Gaussian basis functions and a very general class of three-electron operators without invoking RI approximations. A general methodology to derive vertical, transfer, and horizontal recurrence relations is also presented. PMID:26981747
Barca, Giuseppe M J; Gill, Peter M W
2016-01-01
Explicitly-correlated F12 methods are becoming the first choice for high-accuracy molecular orbital calculations, and can often achieve chemical accuracy with relatively small gaussian basis sets. In most calculations, the many three- and four-electron integrals that formally appear in the theory are avoided through judicious use of resolutions of the identity (RI). However, in order not to jeopardize the intrinsic accuracy of the F12 wave function, the associated RI auxiliary basis set must be large. Here, inspired by the Head-Gordon-Pople (HGP) and PRISM algorithms for two-electron integrals, we present an algorithm to compute directly three-electron integrals over gaussian basis functions and a very general class of three-electron operators, without invoking RI approximations. A general methodology to derive vertical, transfer and horizontal recurrence relations is also presented.
Institute of Scientific and Technical Information of China (English)
ZHENG Guangguo; ZHOU Dongsheng; WEI Xiaopeng; ZHANG Qiang
2012-01-01
Compactly supported radial basis function can enable the coefficient matrix of solving weigh linear system to have a sparse banded structure, thereby reducing the complexity of the algorithm. Firstly, based on the compactly supported radial basis function, the paper makes the complex quadratic function （Multiquadric, MQ for short） to be transformed and proposes a class of compactly supported MQ function. Secondly, the paper describes a method that interpolates discrete motion capture data to solve the motion vectors of the interpolation points and they are used in facial expression reconstruction. Finally, according to this characteris- tic of the uneven distribution of the face markers, the markers are numbered and grouped in accordance with the density level, and then be interpolated in line with each group. The approach not only ensures the accuracy of the deformation of face local area and smoothness, but also reduces the time complexity of computing.
Form and function of complex networks
Holme, Petter
2004-01-01
Networks are all around us, all the time. From the biochemistry of our cells to the web of friendships across the planet. From the circuitry of modern electronics to chains of historical events. A network is the result of the forces that shaped it. Thus the principles of network formation can be, to some extent, deciphered from the network itself. All such information comprises the structure of the network. The study of network structure is the core of modern network science. This thesis cent...
IMAGE COMPRESSION USING DISCRETE ORTHOGONAL TRANSFORMS WITH THE «NOISE-LIKE» BASIS FUNCTIONS
Chernov, V.; Dmitriyev, A.
1999-01-01
The generalization of the discrete orthogonal transforms with the basis functions generated in a pseudorandom way is the subject of the article. The examples of such transforms application in the field of videoinformation coding in the channels with the high level of «seldom» noise are also given.
International Nuclear Information System (INIS)
The US Department of Energy has selected the Savannah River Site (SRS) as the location to consolidate and store aluminum-based spent nuclear fuel (Al-SNF) from domestic and foreign research reactors. This report presents the technical basis for the functional performance requirements
Geng, Haiyang; Li, Xuebing; Chen, Jie; Li, Xinying; Gu, Ruolei
2016-01-01
Objective: Adolescence is a critical period for the vulnerability of anxiety. Imaging studies focusing on adolescents' susceptibility to anxiety suggest that the different development trajectories between the limbic system and the executive control system may play important roles in this phenomenon. However, few studies have explored the brain basis of this susceptibility from the perspective of functional networks. The salience network (SN) consists of a series of key limbic and prefrontal r...
MR-guided dynamic PET reconstruction with the kernel method and spectral temporal basis functions.
Novosad, Philip; Reader, Andrew J
2016-06-21
Recent advances in dynamic positron emission tomography (PET) reconstruction have demonstrated that it is possible to achieve markedly improved end-point kinetic parameter maps by incorporating a temporal model of the radiotracer directly into the reconstruction algorithm. In this work we have developed a highly constrained, fully dynamic PET reconstruction algorithm incorporating both spectral analysis temporal basis functions and spatial basis functions derived from the kernel method applied to a co-registered T1-weighted magnetic resonance (MR) image. The dynamic PET image is modelled as a linear combination of spatial and temporal basis functions, and a maximum likelihood estimate for the coefficients can be found using the expectation-maximization (EM) algorithm. Following reconstruction, kinetic fitting using any temporal model of interest can be applied. Based on a BrainWeb T1-weighted MR phantom, we performed a realistic dynamic [(18)F]FDG simulation study with two noise levels, and investigated the quantitative performance of the proposed reconstruction algorithm, comparing it with reconstructions incorporating either spectral analysis temporal basis functions alone or kernel spatial basis functions alone, as well as with conventional frame-independent reconstruction. Compared to the other reconstruction algorithms, the proposed algorithm achieved superior performance, offering a decrease in spatially averaged pixel-level root-mean-square-error on post-reconstruction kinetic parametric maps in the grey/white matter, as well as in the tumours when they were present on the co-registered MR image. When the tumours were not visible in the MR image, reconstruction with the proposed algorithm performed similarly to reconstruction with spectral temporal basis functions and was superior to both conventional frame-independent reconstruction and frame-independent reconstruction with kernel spatial basis functions. Furthermore, we demonstrate that a joint spectral
International Nuclear Information System (INIS)
Alternative square-integrable (L2) basis functions, the oscillating Hermite Gaussian functions (OHGF's), are proposed for describing the continuum orbitals in L2 calculations on molecules. Each function is the product of a Hermite Gaussian function (HGF), which gives the proper dumping and angular factor, and a radial trigonometric function, cos(kr), which describes the oscillating asymptotic behavior of a continuum orbital. Analytic expressions for the one- and two-electron integrals involving s-type OHGF's and many-center s-type HGF's are derived and their numerical implementation is discussed in detail. The present proposal of adopting a mixed basis set of OHGF's and many-center HGF's for the L2 description of bound and continuum molecular states is compared with the other types of basis functions currently employed. With respect to these, it requires a greater computational effort in the integral evaluation, but it also allows an accurate description of the electronic continuum in general polyatomic systems
Directory of Open Access Journals (Sweden)
Shlomi Tomer
2007-01-01
Full Text Available Abstract Background Localized network patterns are assumed to represent an optimal design principle in different biological networks. A widely used method for identifying functional components in biological networks is looking for network motifs – over-represented network patterns. A number of recent studies have undermined the claim that these over-represented patterns are indicative of optimal design principles and question whether localized network patterns are indeed of functional significance. This paper examines the functional significance of regulatory network patterns via their biological annotation and evolutionary conservation. Results We enumerate all 3-node network patterns in the regulatory network of the yeast S. cerevisiae and examine the biological GO annotation and evolutionary conservation of their constituent genes. Specific 3-node patterns are found to be functionally enriched in different exogenous cellular conditions and thus may represent significant functional components. These functionally enriched patterns are composed mainly of recently evolved genes suggesting that there is no evolutionary pressure acting to preserve such functionally enriched patterns. No correlation is found between over-representation of network patterns and functional enrichment. Conclusion The findings of functional enrichment support the view that network patterns constitute an important design principle in regulatory networks. However, the wildly used method of over-representation for detecting motifs is not suitable for identifying functionally enriched patterns.
A mixed basis density functional approach for one-dimensional systems with B-splines
Ren, Chung-Yuan; Chang, Yia-Chung; Hsue, Chen-Shiung
2016-05-01
A mixed basis approach based on density functional theory is extended to one-dimensional (1D) systems. The basis functions here are taken to be the localized B-splines for the two finite non-periodic dimensions and the plane waves for the third periodic direction. This approach will significantly reduce the number of the basis and therefore is computationally efficient for the diagonalization of the Kohn-Sham Hamiltonian. For 1D systems, B-spline polynomials are particularly useful and efficient in two-dimensional spatial integrations involved in the calculations because of their absolute localization. Moreover, B-splines are not associated with atomic positions when the geometry structure is optimized, making the geometry optimization easy to implement. With such a basis set we can directly calculate the total energy of the isolated system instead of using the conventional supercell model with artificial vacuum regions among the replicas along the two non-periodic directions. The spurious Coulomb interaction between the charged defect and its repeated images by the supercell approach for charged systems can also be avoided. A rigorous formalism for the long-range Coulomb potential of both neutral and charged 1D systems under the mixed basis scheme will be derived. To test the present method, we apply it to study the infinite carbon-dimer chain, graphene nanoribbon, carbon nanotube and positively-charged carbon-dimer chain. The resulting electronic structures are presented and discussed in detail.
Impulsive generalized function synchronization of complex dynamical networks
International Nuclear Information System (INIS)
This Letter investigates generalized function synchronization of continuous and discrete complex networks by impulsive control. By constructing the reasonable corresponding impulsively controlled response networks, some criteria and corollaries are derived for the generalized function synchronization between the impulsively controlled complex networks, continuous and discrete networks are both included. Furthermore, the generalized linear synchronization and nonlinear synchronization are respectively illustrated by several examples. All the numerical simulations demonstrate the correctness of the theoretical results
Identification of Resting State Networks Involved in Executive Function.
Connolly, Joanna; McNulty, Jonathan P; Boran, Lorraine; Roche, Richard A P; Delany, David; Bokde, Arun L W
2016-06-01
The structural networks in the human brain are consistent across subjects, and this is reflected also in that functional networks across subjects are relatively consistent. These findings are not only present during performance of a goal oriented task but there are also consistent functional networks during resting state. It suggests that goal oriented activation patterns may be a function of component networks identified using resting state. The current study examines the relationship between resting state networks measured and patterns of neural activation elicited during a Stroop task. The association between the Stroop-activated networks and the resting state networks was quantified using spatial linear regression. In addition, we investigated if the degree of spatial association of resting state networks with the Stroop task may predict performance on the Stroop task. The results of this investigation demonstrated that the Stroop activated network can be decomposed into a number of resting state networks, which were primarily associated with attention, executive function, visual perception, and the default mode network. The close spatial correspondence between the functional organization of the resting brain and task-evoked patterns supports the relevance of resting state networks in cognitive function. PMID:26935902
RCS Computation by Parallel MoM Using Higher-Order Basis Functions
Directory of Open Access Journals (Sweden)
Ying Yan
2012-01-01
Full Text Available A Message-Passing Interface (MPI parallel implementation of an integral equation solver that uses the Method of Moments (MoM with higher-order basis functions has been proposed to compute the Radar Cross-Section (RCS of various targets. The block-partitioned scheme for the large dense MoM matrix is designed to achieve excellent load balance and high parallel efficiency. Some numerical results demonstrate that higher-order basis in this parallelized scheme is more efficient than the conventional RWG method and able to efficiently analyze RCS of various electrically large platforms.
RCS Computation by Parallel MoM Using Higher-Order Basis Functions
Ying Yan; Yu Zhang; Chang-Hong Liang; Hui Zhao; D. García-Doñoro
2012-01-01
A Message-Passing Interface (MPI) parallel implementation of an integral equation solver that uses the Method of Moments (MoM) with higher-order basis functions has been proposed to compute the Radar Cross-Section (RCS) of various targets. The block-partitioned scheme for the large dense MoM matrix is designed to achieve excellent load balance and high parallel efficiency. Some numerical results demonstrate that higher-order basis in this parallelized scheme is more efficient than the convent...
International Nuclear Information System (INIS)
Series-expansion tomography methods that use natural basis functions (NBFs), also called natural pixels, often use iterative solution techniques or solution by truncated singular value decomposition (TSVD). Here, solution by constrained optimization is proposed. It is shown that significant improvements in the tomographic reconstructions can be obtained, in particular when the coverage by the imaging system is irregular. The analogy between regular NBFs and the filtered backprojection or convolution-backprojection tomography method suggests maximum smoothness in projection space as object function (i.e. a priori information) in the constrained optimization. A further improvement was found by employing NBFs that correspond to a bilinear interpolation in projection space. The new NBF method is compared with various tomography methods: constrained optimization with local basis functions, NBFs with TSVD, and an iterative projection-space reconstruction method. (author)
An efficient ensemble of radial basis functions method based on quadratic programming
Shi, Renhe; Liu, Li; Long, Teng; Liu, Jian
2016-07-01
Radial basis function (RBF) surrogate models have been widely applied in engineering design optimization problems to approximate computationally expensive simulations. Ensemble of radial basis functions (ERBF) using the weighted sum of stand-alone RBFs improves the approximation performance. To achieve a good trade-off between the accuracy and efficiency of the modelling process, this article presents a novel efficient ERBF method to determine the weights through solving a quadratic programming subproblem, denoted ERBF-QP. Several numerical benchmark functions are utilized to test the performance of the proposed ERBF-QP method. The results show that ERBF-QP can significantly improve the modelling efficiency compared with several existing ERBF methods. Moreover, ERBF-QP also provides satisfactory performance in terms of approximation accuracy. Finally, the ERBF-QP method is applied to a satellite multidisciplinary design optimization problem to illustrate its practicality and effectiveness for real-world engineering applications.
Approximation properties of basis functions in variational three-body problem
Vanyashin, V S
2000-01-01
A new variational basis with well-behaved local approximation properties and multiple output is proposed for Coulomb systems. The trial function has proper behaviour at all Coulomb centres. Nonlinear asymptotic parameters are introduced softly: they do not destroy the self-optimized local behaviour of the wave function at vanishing interparticle distances. The diagonalization of the Hamiltonian on a finite Hilbert subspace gives a number of meaningful eigenvalues. Thus together with the ground state some excited states are also reliably approximated. For three-body systems all matrix elements are analytically obtainable up to rational functions of asymptotic parameters. The feasibility of the new basis usage has been proved by a pilot computer algebra calculation. The negative sign of an electron pair local energy at their Coulomb centre has been revealed. PACS number: 31.15.Pf
Advanced functional network analysis in the geosciences: The pyunicorn package
Donges, Jonathan F.; Heitzig, Jobst; Runge, Jakob; Schultz, Hanna C. H.; Wiedermann, Marc; Zech, Alraune; Feldhoff, Jan; Rheinwalt, Aljoscha; Kutza, Hannes; Radebach, Alexander; Marwan, Norbert; Kurths, Jürgen
2013-04-01
Functional networks are a powerful tool for analyzing large geoscientific datasets such as global fields of climate time series originating from observations or model simulations. pyunicorn (pythonic unified complex network and recurrence analysis toolbox) is an open-source, fully object-oriented and easily parallelizable package written in the language Python. It allows for constructing functional networks (aka climate networks) representing the structure of statistical interrelationships in large datasets and, subsequently, investigating this structure using advanced methods of complex network theory such as measures for networks of interacting networks, node-weighted statistics or network surrogates. Additionally, pyunicorn allows to study the complex dynamics of geoscientific systems as recorded by time series by means of recurrence networks and visibility graphs. The range of possible applications of the package is outlined drawing on several examples from climatology.
Functional alignment of regulatory networks: a study of temperate phages.
Directory of Open Access Journals (Sweden)
Ala Trusina
2005-12-01
Full Text Available The relationship between the design and functionality of molecular networks is now a key issue in biology. Comparison of regulatory networks performing similar tasks can provide insights into how network architecture is constrained by the functions it directs. Here, we discuss methods of network comparison based on network architecture and signaling logic. Introducing local and global signaling scores for the difference between two networks, we quantify similarities between evolutionarily closely and distantly related bacteriophages. Despite the large evolutionary separation between phage lambda and 186, their networks are found to be similar when difference is measured in terms of global signaling. We finally discuss how network alignment can be used to pinpoint protein similarities viewed from the network perspective.
Nonequilibrium functional bosonization of quantum wire networks
Energy Technology Data Exchange (ETDEWEB)
Ngo Dinh, Stephane, E-mail: stephane.ngodinh@kit.edu [Institut fuer Theorie der Kondensierten Materie, Karlsruhe Institute of Technology, 76128 Karlsruhe (Germany); DFG Center for Functional Nanostructures, Karlsruhe Institute of Technology, 76128 Karlsruhe (Germany); Bagrets, Dmitry A. [Institut fuer Theoretische Physik, Universitaet zu Koeln, Zuelpicher Str. 77, 50937 Koeln (Germany); Mirlin, Alexander D. [Institut fuer Theorie der Kondensierten Materie, Karlsruhe Institute of Technology, 76128 Karlsruhe (Germany); Institut fuer Nanotechnologie, Karlsruhe Institute of Technology, 76021 Karlsruhe (Germany); DFG Center for Functional Nanostructures, Karlsruhe Institute of Technology, 76128 Karlsruhe (Germany); Petersburg Nuclear Physics Institute, 188300 St. Petersburg (Russian Federation)
2012-11-15
We develop a general approach to nonequilibrium nanostructures formed by one-dimensional channels coupled by tunnel junctions and/or by impurity scattering. The formalism is based on nonequilibrium version of functional bosonization. A central role in this approach is played by the Keldysh action that has a form reminiscent of the theory of full counting statistics. To proceed with evaluation of physical observables, we assume the weak-tunneling regime and develop a real-time instanton method. A detailed exposition of the formalism is supplemented by two important applications: (i) tunneling into a biased Luttinger liquid with an impurity, and (ii) quantum Hall Fabry-Perot interferometry. - Highlights: Black-Right-Pointing-Pointer A nonequilibrium functional bosonization framework for quantum wire networks is developed Black-Right-Pointing-Pointer For the study of observables in the weak tunneling regime a real-time instanton method is elaborated. Black-Right-Pointing-Pointer We consider tunneling into a biased Luttinger liquid with an impurity. Black-Right-Pointing-Pointer We analyze electronic Fabry-Perot interferometers in the integer quantum Hall regime.
A Functional Complexity Framework for the Analysis of Telecommunication Networks
Dzaferagic, Merim; Macaluso, Irene; Marchetti, Nicola
2016-01-01
The rapid evolution of network services demands new paradigms for studying and designing networks. In order to understand the underlying mechanisms that provide network functions, we propose a framework which enables the functional analysis of telecommunication networks. This framework allows us to isolate and analyse a network function as a complex system. We propose functional topologies to visualise the relationships between system entities and enable the systematic study of interactions between them. We also define a complexity metric $C_F$ (functional complexity) which quantifies the variety of structural patterns and roles of nodes in the topology. This complexity metric provides a wholly new approach to study the operation of telecommunication networks. We study the relationship between $C_F$ and different graph structures by analysing graph theory metrics in order to recognize complex organisations. $C_F$ is equal to zero for both a full mesh topology and a disconnected topology. We show that complexi...
Energy Technology Data Exchange (ETDEWEB)
Gu, Renliang, E-mail: Venliang@iastate.edu, E-mail: ald@iastate.edu; Dogandžić, Aleksandar, E-mail: Venliang@iastate.edu, E-mail: ald@iastate.edu [Iowa State University, Center for Nondestructive Evaluation, 1915 Scholl Road, Ames, IA 50011 (United States)
2015-03-31
We develop a sparse image reconstruction method for polychromatic computed tomography (CT) measurements under the blind scenario where the material of the inspected object and the incident energy spectrum are unknown. To obtain a parsimonious measurement model parameterization, we first rewrite the measurement equation using our mass-attenuation parameterization, which has the Laplace integral form. The unknown mass-attenuation spectrum is expanded into basis functions using a B-spline basis of order one. We develop a block coordinate-descent algorithm for constrained minimization of a penalized negative log-likelihood function, where constraints and penalty terms ensure nonnegativity of the spline coefficients and sparsity of the density map image in the wavelet domain. This algorithm alternates between a Nesterov’s proximal-gradient step for estimating the density map image and an active-set step for estimating the incident spectrum parameters. Numerical simulations demonstrate the performance of the proposed scheme.
Phase estimation from noisy phase fringe patterns using linearly independent basis functions
International Nuclear Information System (INIS)
A novel technique is proposed for obtaining unwrapped phase estimation from a highly noisy exponential phase field. In this technique, the interference phase is represented as a linear combination of linearly independent and pre-defined basis functions along each row/column of the phase field at a time. Consequently, the problem of phase estimation is converted into the problem of the estimation of the weights of the basis functions. The extended Kalman filter formulation allows for the accurate estimation of these weights. The simulation results indicate that the formulation offers a strong noise robustness in the phase estimation. Experimental results obtained using digital holographic interferometry and digital speckle pattern interferometry set-ups are provided to demonstrate the practical applicability of the proposed method. (paper)
International Nuclear Information System (INIS)
We develop a sparse image reconstruction method for polychromatic computed tomography (CT) measurements under the blind scenario where the material of the inspected object and the incident energy spectrum are unknown. To obtain a parsimonious measurement model parameterization, we first rewrite the measurement equation using our mass-attenuation parameterization, which has the Laplace integral form. The unknown mass-attenuation spectrum is expanded into basis functions using a B-spline basis of order one. We develop a block coordinate-descent algorithm for constrained minimization of a penalized negative log-likelihood function, where constraints and penalty terms ensure nonnegativity of the spline coefficients and sparsity of the density map image in the wavelet domain. This algorithm alternates between a Nesterov’s proximal-gradient step for estimating the density map image and an active-set step for estimating the incident spectrum parameters. Numerical simulations demonstrate the performance of the proposed scheme
Real-space Kerker method for self-consistent calculation using non-orthogonal basis functions
International Nuclear Information System (INIS)
We have proposed the real-space Kerker method for fast self-consistent-field calculations in real-space approaches using non-orthogonal basis functions. In large-scale systems with many atoms, the Kerker method is a very efficient way to prevent charge sloshing, which induces numerical instability during the self-consistent iterations. We construct the Kerker preconditioning matrix with non-orthogonal basis functions and the preconditioning is performed by solving linear equations. The proposed real-space Kerker method is identical to the method in reciprocal space, with the following two advantages: (i) the method is suitable for massively parallel computation since it does not use the fast Fourier transform. (ii) The preconditioning is performed in an acceptable computational time since time-consuming integration, including the exponential kernel, need not be performed, unlike the method used by Manninen et al (1975 Phys. Rev. B 12 4012)
Resting state functional connectivity: its physiological basis and application in neuropharmacology.
Lu, Hanbing; Stein, Elliot A
2014-09-01
Brain structures do not work in isolation; they work in concert to produce sensory perception, motivation and behavior. Systems-level network activity can be investigated by resting state magnetic resonance imaging (rsMRI), an emerging neuroimaging technique that assesses the synchrony of the brain's ongoing spontaneous activity. Converging evidence reveals that rsMRI is able to consistently identify distinct spatiotemporal patterns of large-scale brain networks. Dysregulation within and between these networks has been implicated in a number of neurodegenerative and neuropsychiatric disorders, including Alzheimer's disease and drug addiction. Despite wide application of this approach in systems neuroscience, the physiological basis of these fluctuations remains incompletely understood. Here we review physiological studies in electrical, metabolic and hemodynamic fluctuations that are most pertinent to the rsMRI signal. We also review recent applications to neuropharmacology - specifically drug effects on resting state fluctuations. We speculate that the mechanisms governing spontaneous fluctuations in regional oxygenation availability likely give rise to the observed rsMRI signal. We conclude by identifying several open questions surrounding this technique. This article is part of the Special Issue Section entitled 'Neuroimaging in Neuropharmacology'. PMID:24012656
SNAP: A computer program for generating symbolic network functions
Lin, P. M.; Alderson, G. E.
1970-01-01
The computer program SNAP (symbolic network analysis program) generates symbolic network functions for networks containing R, L, and C type elements and all four types of controlled sources. The program is efficient with respect to program storage and execution time. A discussion of the basic algorithms is presented, together with user's and programmer's guides.
Multi-dimensional option pricing using radial basis functions and the generalized Fourier transform
Larsson, Elisabeth; Ahlander, Krister; Hall, Andreas
2008-12-01
We show that the generalized Fourier transform can be used for reducing the computational cost and memory requirements of radial basis function methods for multi-dimensional option pricing. We derive a general algorithm, including a transformation of the Black-Scholes equation into the heat equation, that can be used in any number of dimensions. Numerical experiments in two and three dimensions show that the gain is substantial even for small problem sizes. Furthermore, the gain increases with the number of dimensions.
Genetic basis of cytokinin and auxin functions during root nodule development
Suzaki, Takuya; Ito, Momoyo; Kawaguchi, Masayoshi
2013-01-01
The phytohormones cytokinin and auxin are essential for the control of diverse aspects of cell proliferation and differentiation processes in plants. Although both phytohormones have been suggested to play key roles in the regulation of root nodule development, only recently, significant progress has been made in the elucidation of the molecular genetic basis of cytokinin action in the model leguminous species, Lotus japonicus and Medicago truncatula. Identification and functional analyses of...
Multiuser detection using soft particle swarm optimization along with radial basis function
Zubair, Muhammad; CHOUDHRY, Muhammad Aamer Saleem; Qureshi, Ijaz Mansoor
2014-01-01
The multiuser detection (MUD) problem was addressed as a pattern classification problem. Due to their strength in solving nonlinear separable problems, radial basis functions, aided by soft particle swarm optimization, were proposed to perform MUD for a synchronous direct sequence code division multiple access system. The proposed solution was shown to exhibit performance better than a number of other suboptimum detectors including the genetic algorithm and the classical particle swarm optimi...
1 Taiwo O. A
2013-01-01
The problem of solving special nth-order linear integro-differential equations has special importance in engineering and sciences that constitutes a good model for many systems in various fields. In this paper, we construct canonical polynomial from the differential parts of special nth-order integro-differential equations and use it as our basis function for the numerical solutions of special nth-order integro-differential equations. The results obtained by this method are compared with thos...
Fukushima, Kimichika
2015-01-01
This paper presents analytical eigenenergies for a pair of confined fundamental fermion and antifermion under a linear potential derived from the Wilson loop for the non-Abelian Yang-Mills field. We use basis functions localized in spacetime, and the Hamiltonian matrix of the Dirac equation is analytically diagonalized. The squared system eigenenergies are proportional to the string tension and the absolute value of the Dirac's relativistic quantum number related to the total angular momentum, consistent with the expectation.
Calculation of integrals for the LCAO MO method in a basis of hydrogen functions
International Nuclear Information System (INIS)
The authors give an algorithm for the analytical calculation of multicenter quantum chemical integrals in a basis of hydrogenic AO's. A characteristic feature of the algorithm involves expansion of two-center distributions with respect to one-center functions, which leads to a more compact expression for the multicenter integral than does the use of an expansion of AO's relative to another center. They obtain recurrence relations for the expansion coefficients
Analysis of the diffracted current basis functions used in the hybrid MoM-PO method
Institute of Scientific and Technical Information of China (English)
GONG Zhuqian; XIAO Boxun; ZHU Guoqiang; GUO Jianyan
2007-01-01
The combined moment method(MoM)-physical optics (PO)approach proposed by Bilow fails in some cases.Based on the theory of diffraction and the fundamental theory of electromagnetism,Bilow's diffracted current basis function was modified both within and outside the transition regions.The improved MoM-PO technique is validated by comparison with exact solutions for a right-angled perfectly conducting wedge at normal incidence.
Roohani Ghehsareh, Hadi; Kamal Etesami, Seyed; Hajisadeghi Esfahani, Maryam
2016-08-01
In the current work, the electromagnetic (EM) scattering from infinite perfectly conducting cylinders with arbitrary cross sections in both transverse magnetic (TM) and transverse electric (TE) modes is numerically investigated. The problems of TE and TM EM scattering can be mathematically modelled via the magnetic field integral equation (MFIE) and the electric field integral equation (EFIE), respectively. An efficient technique is performed to approximate the solution of these surface integral equations. In the proposed numerical method, compactly supported radial basis functions (RBFs) are employed as the basis functions. The radial and compactly supported properties of these basis functions substantially reduce the computational cost and improve the efficiency of the method. To show the accuracy of the proposed technique, it has been applied to solve three interesting test problems. Moreover, the method is well used to compute the electric current density and also the radar cross section (RCS) for some practical scatterers with different cross section geometries. The reported numerical results through the tables and figures demonstrate the efficiency and accuracy of the proposed technique.
Application of natural basis functions to soft x-ray tomography
International Nuclear Information System (INIS)
Natural basis functions (NBFs), also known as natural pixels in the literature, have been applied in tomographic reconstructions of simulated measurements for the JET soft x-ray system, which has a total of about 200 detectors spread over 6 directions. Various types of NBFs, i.e. normal, generalized and orthonormal NBFs, are reviewed. The number of basis functions is roughly equal to the number of measurements. Therefore, little a priori information is required as regularization and truncated singular-value decomposition can be used for the tomographic inversion. The results of NBFs are compared with reconstructions by the same solution technique using local basis functions (LBFs), and with the reconstructions of a conventional constrained-optimization tomography method with many more LBFs that requires more a priori information. Although the results of the conventional method are superior due to the a priori information, the results of the NBF and other LBF methods are reasonable and show the main features. Therefore, NBFs are a promising way to assess whether features in reconstructions are real or artefacts resulting from the a priori information. Of the NBFs, regular triangular (generalized) NBFs give the most acceptable reconstructions, much better than traditional square pixels, although the reconstructions with pyramid-shaped LBFs are also reasonable and have slightly smaller reconstruction errors. A more-regular (virtual) viewing geometry improves the reconstructions. However, simulations with a viewing geometry with a total of 480 channels spread over 12 directions clearly show that a priori information still improves the reconstructions considerably. (author)
Changes in cognitive state alter human functional brain networks
Directory of Open Access Journals (Sweden)
Malaak Nasser Moussa
2011-08-01
Full Text Available The study of the brain as a whole system can be accomplished using network theory principles. Research has shown that human functional brain networks during a resting state exhibit small-world properties and high degree nodes, or hubs, localized to brain areas consistent with the default mode network (DMN. However, the study of brain networks across different tasks and or cognitive states has been inconclusive. Research in this field is important because the underpinnings of behavioral output are inherently dependent on whether or not brain networks are dynamic. This is the first comprehensive study to evaluate multiple network metrics at a voxel-wise resolution in the human brain at both the whole brain and regional level under various conditions: resting state, visual stimulation, and multisensory (auditory and visual stimulation. Our results show that despite global network stability, functional brain networks exhibit considerable task-induced changes in connectivity, efficiency, and community structure at the regional level.
Application of Radial Basis Network Model for HIV/AIDs Regimen Specifications
Balasubramanie, P
2009-01-01
HIV/AIDs Regimen specification one of many problems for which bioinformaticians have implemented and trained machine learning methods such as neural networks. Predicting HIV resistance would be much easier, but unfortunately we rarely have enough structural information available to train a neural network. To network model designed to predict how long the HIV patient can prolong his/her life time with certain regimen specification. To learn this model 300 patient's details have taken as a training set to train the network and 100 patients medical history has taken to test this model. This network model is trained using MAT lab implementation.
Cognitive fitness of cost-efficient brain functional networks
Bassett, Danielle S; Bullmore, Edward T.; Meyer-Lindenberg, Andreas; Apud, José A; Weinberger, Daniel R.; Coppola, Richard
2009-01-01
The human brain's capacity for cognitive function is thought to depend on coordinated activity in sparsely connected, complex networks organized over many scales of space and time. Recent work has demonstrated that human brain networks constructed from neuroimaging data have economical small-world properties that confer high efficiency of information processing at relatively low connection cost. However, it has been unclear how the architecture of complex brain networks functioning at differe...
Functional brain networks associated with eating behaviors in obesity
Bo-yong Park; Jongbum Seo; Hyunjin Park
2016-01-01
Obesity causes critical health problems including diabetes and hypertension that affect billions of people worldwide. Obesity and eating behaviors are believed to be closely linked but their relationship through brain networks has not been fully explored. We identified functional brain networks associated with obesity and examined how the networks were related to eating behaviors. Resting state functional magnetic resonance imaging (MRI) scans were obtained for 82 participants. Data were from...
Quantifying the connectivity of a network: The network correlation function method
Barzel, Baruch; Biham, Ofer
2009-10-01
Networks are useful for describing systems of interacting objects, where the nodes represent the objects and the edges represent the interactions between them. The applications include chemical and metabolic systems, food webs as well as social networks. Lately, it was found that many of these networks display some common topological features, such as high clustering, small average path length (small-world networks), and a power-law degree distribution (scale-free networks). The topological features of a network are commonly related to the network’s functionality. However, the topology alone does not account for the nature of the interactions in the network and their strength. Here, we present a method for evaluating the correlations between pairs of nodes in the network. These correlations depend both on the topology and on the functionality of the network. A network with high connectivity displays strong correlations between its interacting nodes and thus features small-world functionality. We quantify the correlations between all pairs of nodes in the network, and express them as matrix elements in the correlation matrix. From this information, one can plot the correlation function for the network and to extract the correlation length. The connectivity of a network is then defined as the ratio between this correlation length and the average path length of the network. Using this method, we distinguish between a topological small world and a functional small world, where the latter is characterized by long-range correlations and high connectivity. Clearly, networks that share the same topology may have different connectivities, based on the nature and strength of their interactions. The method is demonstrated on metabolic networks, but can be readily generalized to other types of networks.
A Mixed Basis Density Functional Approach for Low Dimensional Systems with B-splines
Ren, Chung-Yuan; Chang, Yia-Chung
2014-01-01
A mixed basis approach based on density functional theory is employed for low dimensional systems. The basis functions are taken to be plane waves for the periodic direction multiplied by B-spline polynomials in the non-periodic direction. B-splines have the following advantages:(1) the associated matrix elements are sparse, (2) B-splines possess a superior treatment of derivatives, (3) B-splines are not associated with atomic positions when the geometry structure is optimized, making the geometry optimization easy to implement. With this mixed basis set we can directly calculate the total energy of the system instead of using the conventional supercell model with a slab sandwiched between vacuum regions. A generalized Lanczos-Krylov iterative method is implemented for the diagonalization of the Hamiltonian matrix. To demonstrate the present approach, we apply it to study the C(001)-(2x1) surface with the norm-conserving pseudopotential, the n-type delta-doped graphene, and graphene nanoribbon with Vanderbilt...
The Union of Shortest Path Trees of Functional Brain Networks.
Meier, Jil; Tewarie, Prejaas; Van Mieghem, Piet
2015-11-01
Communication between brain regions is still insufficiently understood. Applying concepts from network science has shown to be successful in gaining insight in the functioning of the brain. Recent work has implicated that especially shortest paths in the structural brain network seem to play a major role in the communication within the brain. So far, for the functional brain network, only the average length of the shortest paths has been analyzed. In this article, we propose to construct the union of shortest path trees (USPT) as a new topology for the functional brain network. The minimum spanning tree, which has been successful in a lot of recent studies to comprise important features of the functional brain network, is always included in the USPT. After interpreting the link weights of the functional brain network as communication probabilities, the USPT of this network can be uniquely defined. Using data from magnetoencephalography, we applied the USPT as a method to find differences in the network topology of multiple sclerosis patients and healthy controls. The new concept of the USPT of the functional brain network also allows interesting interpretations and may represent the highways of the brain. PMID:26027712
Tuan, P H; Liang, H C; Tung, J C; Chiang, P Y; Huang, K F; Chen, Y F
2015-12-01
The coupling interaction between the driving source and the RLC network is explored and characterized as the effective impedance. The mathematical form of the derived effective impedance is verified to be identical to the meromorphic function of the singular billiards with a truncated basis. By using the derived impedance function, the resonant modes of the RLC network can be divided into the open-circuit and short-circuit states to manifest the evolution of eigenvalues and eigenstates from closed quantum billiards to the singular billiards with a truncated basis in the strongly coupled limit. The substantial differences of the wave patterns between the uncoupled and strongly coupled eigenmodes in the two-dimensional wave systems can be clearly revealed with the RLC network. Finally, the short-circuit resonant states are exploited to confirm that the experimental Chladni nodal-line patterns in the vibrating plate are the resonant modes subject to the strong coupling between the oscillation system and the driving source. PMID:26764773
Bayesian Smoothing with Gaussian Processes Using Fourier Basis Functions in the spectralGP Package
Directory of Open Access Journals (Sweden)
Christopher J. Paciorek
2007-04-01
Full Text Available The spectral representation of stationary Gaussian processes via the Fourier basis provides a computationally efficient specification of spatial surfaces and nonparametric regression functions for use in various statistical models. I describe the representation in detail and introduce the spectralGP package in R for computations. Because of the large number of basis coefficients, some form of shrinkage is necessary; I focus on a natural Bayesian approach via a particular parameterized prior structure that approximates stationary Gaussian processes on a regular grid. I review several models from the literature for data that do not lie on a grid, suggest a simple model modification, and provide example code demonstrating MCMC sampling using the spectralGP package. I describe reasons that mixing can be slow in certain situations and provide some suggestions for MCMC techniques to improve mixing, also with example code, and some general recommendations grounded in experience.
Functional identification in correlation networks using gene ontology edge annotation.
Dempsey, Kathryn; Thapa, Ishwor; Bastola, Dhundy; Ali, Hesham
2012-01-01
Correlation networks identify mechanisms behind observed change in temporal data sets; however, it is often difficult to discriminate between causative versus coincidental structures in such networks. We propose a method to enhance causative relationships based on annotations derived from the Gene Ontology (GO). Enriching correlation networks with biological relationships is likely to conserve relevant signals while reducing the network size. The obtained results are structures enriched in GO functions, despite reduction in network size. Our proposed method annotates edges according to the shortest path between elements and the position of the deepest common parent in the GO tree. Our results show that such enrichment brings functional relationships to the forefront which allows for the identification of clusters with significant biological relevance. Further, this method impacts the identification of essential genes within a network model. This approach for uncovering true function of relationships provides annotation beyond traditional statistical analysis. PMID:23013651
Dimensionality reduction in conic section function neural network
Indian Academy of Sciences (India)
Tulay Yildirim; Lale Ozyilmaz
2002-12-01
This paper details how dimensionality can be reduced in conic section function neural networks (CSFNN). This is particularly important for hardware implementation of networks. One of the main problems to be solved when considering the hardware design is the high connectivity requirement. If the effect that each of the network inputs has on the network output after training a neural network is known, then some inputs can be removed from the network. Consequently, the dimensionality of the network, and hence, the connectivity and the training time can be reduced. Sensitivity analysis, which extracts the cause and effect relationship between the inputs and outputs of the network, has been proposed as a method to achieve this and is investigated for Iris plant, thyroid disease and ionosphere databases. Simulations demonstrate the validity of the method used.
Functional clustering in hippocampal cultures: relating network structure and dynamics
International Nuclear Information System (INIS)
In this work we investigate the relationship between gross anatomic structural network properties, neuronal dynamics and the resultant functional structure in dissociated rat hippocampal cultures. Specifically, we studied cultures as they developed under two conditions: the first supporting glial cell growth (high glial group), and the second one inhibiting it (low glial group). We then compared structural network properties and the spatio-temporal activity patterns of the neurons. Differences in dynamics between the two groups could be linked to the impact of the glial network on the neuronal network as the cultures developed. We also implemented a recently developed algorithm called the functional clustering algorithm (FCA) to obtain the resulting functional network structure. We show that this new algorithm is useful for capturing changes in functional network structure as the networks evolve over time. The FCA detects changes in functional structure that are consistent with expected dynamical differences due to the impact of the glial network. Cultures in the high glial group show an increase in global synchronization as the cultures age, while those in the low glial group remain locally synchronized. We additionally use the FCA to quantify the amount of synchronization present in the cultures and show that the total level of synchronization in the high glial group is stronger than in the low glial group. These results indicate an interdependence between the glial and neuronal networks present in dissociated cultures
A Game for Energy-Aware Allocation of Virtualized Network Functions
Directory of Open Access Journals (Sweden)
Roberto Bruschi
2016-01-01
Full Text Available Network Functions Virtualization (NFV is a network architecture concept where network functionality is virtualized and separated into multiple building blocks that may connect or be chained together to implement the required services. The main advantages consist of an increase in network flexibility and scalability. Indeed, each part of the service chain can be allocated and reallocated at runtime depending on demand. In this paper, we present and evaluate an energy-aware Game-Theory-based solution for resource allocation of Virtualized Network Functions (VNFs within NFV environments. We consider each VNF as a player of the problem that competes for the physical network node capacity pool, seeking the minimization of individual cost functions. The physical network nodes dynamically adjust their processing capacity according to the incoming workload, by means of an Adaptive Rate (AR strategy that aims at minimizing the product of energy consumption and processing delay. On the basis of the result of the nodes’ AR strategy, the VNFs’ resource sharing costs assume a polynomial form in the workflows, which admits a unique Nash Equilibrium (NE. We examine the effect of different (unconstrained and constrained forms of the nodes’ optimization problem on the equilibrium and compare the power consumption and delay achieved with energy-aware and non-energy-aware strategy profiles.
Density functional and neural network analysis
DEFF Research Database (Denmark)
Jalkanen, K. J.; Suhai, S.; Bohr, Henrik
1997-01-01
dichroism (VCD) intensities. The large changes due to hydration on the structures, relative stability of conformers, and in the VA and VCD spectra observed experimentally are reproduced by the DFT calculations. Furthermore a neural network was constructed for reproducing the inverse scattering data (infer...... the structural coordinates from spectroscopic data) that the DFT method could produce. Finally the neural network performances are used to monitor a sensitivity or dependence analysis of the importance of secondary structures....
Directory of Open Access Journals (Sweden)
SophieGaboyard-Niay
2012-06-01
Full Text Available In a previous study (Brugeaud et al., 2007, we observed spontaneous restoration of the vestibular function in young adult rodents following excitotoxic injury of the neuronal network of vestibular endorgans. The functional restoration was supported by a repair of synaptic contacts between hair cells and primary vestibular neurons. This process was observed in 2/3 of the animals studied and occurred within five days following the synapse insult. To assess whether structural plasticity is a fundamental trait of altered vestibular endorgans and to decipher the cellular mechanisms that support such a repair process, we studied the neuronal regeneration and synaptogenesis in co-cultures of vestibular epithelia and Scarpa’s ganglion from young and adult rodents. We demonstrate that under specific culture conditions, primary vestibular neurons from young mice or rats exhibit robust ability to regenerate nervous processes. When co-cultured with vestibular epithelia, primary vestibular neurons were able to establish de novo contacts with hair cells. Under the present paradigm, these contacts displayed morphological features of immature synaptic contacts. This reparative capacity remained in older mice although to a lesser extent. Identifying the basic mechanisms underlying the repair process may provide a basis for novel therapeutic strategies to restore mature and functional vestibular synaptic contacts following damage or loss.
Network-Level Structure-Function Relationships in Human Neocortex.
Mišić, Bratislav; Betzel, Richard F; de Reus, Marcel A; van den Heuvel, Martijn P; Berman, Marc G; McIntosh, Anthony R; Sporns, Olaf
2016-07-01
The dynamics of spontaneous fluctuations in neural activity are shaped by underlying patterns of anatomical connectivity. While numerous studies have demonstrated edge-wise correspondence between structural and functional connections, much less is known about how large-scale coherent functional network patterns emerge from the topology of structural networks. In the present study, we deploy a multivariate statistical technique, partial least squares, to investigate the association between spatially extended structural networks and functional networks. We find multiple statistically robust patterns, reflecting reliable combinations of structural and functional subnetworks that are optimally associated with one another. Importantly, these patterns generally do not show a one-to-one correspondence between structural and functional edges, but are instead distributed and heterogeneous, with many functional relationships arising from nonoverlapping sets of anatomical connections. We also find that structural connections between high-degree hubs are disproportionately represented, suggesting that these connections are particularly important in establishing coherent functional networks. Altogether, these results demonstrate that the network organization of the cerebral cortex supports the emergence of diverse functional network configurations that often diverge from the underlying anatomical substrate. PMID:27102654
Network Function Virtualization Technology:Progress and Standardization
Institute of Scientific and Technical Information of China (English)
Huiling Zhao; Yunpeng Xie; Fan Shi
2014-01-01
Network innovation and business transformation are both necessary for telecom operators to adapt to new situations, but operators face challenges in terms of network bearer complexity, business centralization, and IT/CT integration. Network function virtualiza-tion (NFV) may inspire new development ideas, but many doubts still exist within industry, especially about how to introduce NFV into an operator ’s network. This article describes the latest progress in NFV standardization, NFV requirements and hot technology issues, and typical NFV applications in an operator networks.
Systematic Functional Annotation and Visualization of Biological Networks.
Baryshnikova, Anastasia
2016-06-22
Large-scale biological networks represent relationships between genes, but our understanding of how networks are functionally organized is limited. Here, I describe spatial analysis of functional enrichment (SAFE), a systematic method for annotating biological networks and examining their functional organization. SAFE visualizes the network in 2D space and measures the continuous distribution of functional enrichment across local neighborhoods, producing a list of the associated functions and a map of their relative positioning. I applied SAFE to annotate the Saccharomyces cerevisiae genetic interaction similarity network and protein-protein interaction network with gene ontology terms. SAFE annotations of the genetic network matched manually derived annotations, while taking less than 1% of the time, and proved robust to noise and sensitive to biological signal. Integration of genetic interaction and chemical genomics data using SAFE revealed a link between vesicle-mediate transport and resistance to the anti-cancer drug bortezomib. These results demonstrate the utility of SAFE for examining biological networks and understanding their functional organization. PMID:27237738
Voytek, Bradley; Robert T Knight
2015-01-01
Perception, cognition, and social interaction depend upon coordinated neural activity. This coordination operates within noisy, overlapping, and distributed neural networks operating at multiple timescales. These networks are built upon a structural scaffolding with intrinsic neuroplasticity that changes with development, aging, disease, and personal experience. In this paper we begin from the perspective that successful interregional communication relies upon the transient synchronization be...
Directory of Open Access Journals (Sweden)
1 Taiwo O. A
2013-01-01
Full Text Available The problem of solving special nth-order linear integro-differential equations has special importance in engineering and sciences that constitutes a good model for many systems in various fields. In this paper, we construct canonical polynomial from the differential parts of special nth-order integro-differential equations and use it as our basis function for the numerical solutions of special nth-order integro-differential equations. The results obtained by this method are compared with those obtained by Adomian Decomposition method. It is also observed that the new method is an effective method with high accuracy. Some examples are given to illustrate the method.
Vo, P. T.; Eversman, W.
1978-01-01
The method of weighted residuals (MWR) in the form of a modified Galerkin method with trigonometric basis functions is used to compute the transmission of sound in an axisymmetric duct. The method is used to generate the axial wave number for uniform ducts. These are compared with exact solutions generated by a formal eigenvalue routine in the hard-wall case and a Runge-Kutta integration eigenvalue scheme in the soft-wall case. The method is applicable to both flow and no-flow cases.
Directory of Open Access Journals (Sweden)
MALLESWARAN M,
2010-12-01
Full Text Available Global positioning System (GPS and Inertial Navigation System (INS data can be integrated together to provide a reliable navigation. GPS/INS data integration provides reliable navigation solutions by overcoming each of their shortcomings, including signal blockage for GPS and increase in position errors with time for INS. This paper aims to provide GPS/INS data integration utilizing Artificial Neural Network (ANN architecture. This architecture is based on Feed Forward Neural Networks, which generally includes Radial Basis Function (RBF neural network and Back Propagation neural network (BPN. These are systematic methods for training multi-layer artificial networks. The BPN-ANN and RBF-ANN modules are trained to predict the INS position error and provide accurate positioning of the moving vehicle. This paper also compares performance of theGPS/INS data integration system by using different activation function like Bipolar Sigmoidal Function (BPSF, Binary Sigmoidal Function (BISF, Hyperbolic Tangential Function (HTF and Gaussian Function (GF in BPN-ANN and using Gaussian function in RBF-ANN.
GRACE L1b inversion through a self-consistent modified radial basis function approach
Yang, Fan; Kusche, Juergen; Rietbroek, Roelof; Eicker, Annette
2016-04-01
Implementing a regional geopotential representation such as mascons or, more general, RBFs (radial basis functions) has been widely accepted as an efficient and flexible approach to recover the gravity field from GRACE (Gravity Recovery and Climate Experiment), especially at higher latitude region like Greenland. This is since RBFs allow for regionally specific regularizations over areas which have sufficient and dense GRACE observations. Although existing RBF solutions show a better resolution than classical spherical harmonic solutions, the applied regularizations cause spatial leakage which should be carefully dealt with. It has been shown that leakage is a main error source which leads to an evident underestimation of yearly trend of ice-melting over Greenland. Unlike some popular post-processing techniques to mitigate leakage signals, this study, for the first time, attempts to reduce the leakage directly in the GRACE L1b inversion by constructing an innovative modified (MRBF) basis in place of the standard RBFs to retrieve a more realistic temporal gravity signal along the coastline. Our point of departure is that the surface mass loading associated with standard RBF is smooth but disregards physical consistency between continental mass and passive ocean response. In this contribution, based on earlier work by Clarke et al.(2007), a physically self-consistent MRBF representation is constructed from standard RBFs, with the help of the sea level equation: for a given standard RBF basis, the corresponding MRBF basis is first obtained by keeping the surface load over the continent unchanged, but imposing global mass conservation and equilibrium response of the oceans. Then, the updated set of MRBFs as well as standard RBFs are individually employed as the basis function to determine the temporal gravity field from GRACE L1b data. In this way, in the MRBF GRACE solution, the passive (e.g. ice melting and land hydrology response) sea level is automatically
Changes in brain functional network connectivity after stroke
Institute of Scientific and Technical Information of China (English)
Wei Li; Yapeng Li; Wenzhen Zhu; Xi Chen
2014-01-01
Studies have shown that functional network connection models can be used to study brain net-work changes in patients with schizophrenia. In this study, we inferred that these models could also be used to explore functional network connectivity changes in stroke patients. We used independent component analysis to find the motor areas of stroke patients, which is a novel way to determine these areas. In this study, we collected functional magnetic resonance imaging datasets from healthy controls and right-handed stroke patients following their ifrst ever stroke. Using independent component analysis, six spatially independent components highly correlat-ed to the experimental paradigm were extracted. Then, the functional network connectivity of both patients and controls was established to observe the differences between them. The results showed that there were 11 connections in the model in the stroke patients, while there were only four connections in the healthy controls. Further analysis found that some damaged connections may be compensated for by new indirect connections or circuits produced after stroke. These connections may have a direct correlation with the degree of stroke rehabilitation. Our ifndings suggest that functional network connectivity in stroke patients is more complex than that in hea-lthy controls, and that there is a compensation loop in the functional network following stroke. This implies that functional network reorganization plays a very important role in the process of rehabilitation after stroke.
Radial basis function simulation and metamodelling of surface roughness in centreless grinding
Directory of Open Access Journals (Sweden)
P. Krajnik
2005-12-01
Full Text Available Purpose: The purpose of this study was to investigate the efficiency of artificial neural networks and the related metamodels to simulate and identify complex centreless grinding process.Design/methodology/approach: The modelling is founded on the system approach, which is efficiently dealing with the complexity of the grinding process. The unknown process transfer function is identified via artificial neural network that requires fewer assumptions and less precise information about the process modelled than other conventional modelling techniques. The developed metamodel is a response surface (polynomial fit of the simulated process that is achieved by the computer model.Findings: The metamodel quality is strongly related to the prediction accuracy of the underlying simulation model. The generalisation capability of an artificial neural network is sensitive to the training samples (design of experiments. The predictive ability of a metamodel is comparable to the accuracy of the response surface regression model.Research limitations/implications: Improved simulation model and application of unconventional metamodels (Gaussian process regression will significantly improve the presented preliminary results.Originality/value: Metamodelling of computer experiments is an expansion of response surface methodology and the classical designs of experiments and represents a new paradigm in empirical modelling of machining operations.
Functional imaging in oncology. Biophysical basis and technical approaches. Vol. 1
Energy Technology Data Exchange (ETDEWEB)
Luna, Antonio [Health Time Group, Jaen (Spain); University Hospitals, Case Western Reserve Univ., Cleveland, OH (United States). Dept. of Radiology; Vilanova, Joan C. [Clinica Girona - Hospital Sta. Caterina, Girona (Spain); Hygino da Cruz, L. Celso Jr. [CDPI and IRM, Rio de Janeiro, RJ (Brazil). Dept. of Radiology; Rossi, Santiago E. (ed.) [Centro de Diagnostico, Buenos Aires (Argentina)
2014-07-01
Easy-to-read manual on new functional imaging techniques in oncology. Explains current clinical applications and outlines future avenues. Includes numerous high-quality illustrations to highlight the major teaching points. In the new era of functional and molecular imaging, both currently available imaging biomarkers and biomarkers under development are expected to lead to major changes in the management of oncological patients. This well-illustrated two-volume book is a practical manual on the various imaging techniques capable of delivering functional information on cancer, including preclinical and clinical imaging techniques, based on US, CT, MRI, PET and hybrid modalities. This first volume explains the biophysical basis for these functional imaging techniques and describes the techniques themselves. Detailed information is provided on the imaging of cancer hallmarks, including angiogenesis, tumor metabolism, and hypoxia. The techniques and their roles are then discussed individually, covering the full range of modalities in clinical use as well as new molecular and functional techniques. The value of a multiparametric approach is also carefully considered.
Boyd, John P.
2011-02-01
Radial basis function (RBF) interpolants have become popular in computer graphics, neural networks and for solving partial differential equations in many fields of science and engineering. In this article, we compare five different species of RBFs: Gaussians, hyperbolic secant (sech's), inverse quadratics, multiquadrics and inverse multiquadrics. We show that the corresponding cardinal functions for a uniform, unbounded grid are all approximated by the same function: C(X) ∼ (1/(ρ)) sin (πX)/sinh (πX/ρ) for some constant ρ(α) which depends on the inverse width parameter (“shape parameter”) α of the RBF and also on the RBF species. The error in this approximation is exponentially small in 1/α for sech's and inverse quadratics and exponentially small in 1/α2 for Gaussians; the error is proportional to α4 for multiquadrics and inverse multiquadrics. The error in all cases is small even for α ∼ O(1). These results generalize to higher dimensions. The Gaussian RBF cardinal functions in any number of dimensions d are, without approximation, the tensor product of one dimensional Gaussian cardinal functions: Cd(x1,x2…,xd)=∏j=1dC(xj). For other RBF species, we show that the two-dimensional cardinal functions are well approximated by the products of one-dimensional cardinal functions; again the error goes to zero as α → 0. The near-identity of the cardinal functions implies that all five species of RBF interpolants are (almost) the same, despite the great differences in the RBF ϕ's themselves.
Tests of Maxwellian-Weighted Basis Functions in a Discontinuous Galerkin Kinetic Code
Hammett, G. W.; Hakim, A.; Shi, E. L.
2013-10-01
Discontinuous Galerkin (DG) algorithms have been very actively studied and used in the applied math and computational fluid dynamics communities in the past decade. They combine certain attractive properties of finite element methods (like high accuracy per interpolation point) and finite volume methods (like locality of calculation for parallel computers and flexibility for limiters). Higher-order methods also have more floating point operations per data point, and so can be more efficient on modern computers that are often bandwidth limited. The flexibility of DG allows one to consider various types of Maxwellian-weighted basis functions while preserving important conservation properties of the underlying system. One can think of this either as a modified inner-product norm or a Petrov-Galerkin approach. Here we explore some ways of using Maxwellian-Weighted Basis functions and test them on paradigm problems using the Gkeyll code, which is being developed for edge gyrokinetic simulations. In addition to the formal order of accuracy in the asymptotic limit as a grid is refined, we are also interested in robust reasonable solutions on coarser grids. This work was supported by the Max-Planck/Princeton Center for Plasma Physics and DOE Contract DE-AC02-09CH11466.
Functional assessment and structural basis of antibody binding to human papillomavirus capsid.
Zhang, Xiao; Li, Shaowei; Modis, Yorgo; Li, Zhihai; Zhang, Jun; Xia, Ningshao; Zhao, Qinjian
2016-03-01
Persistent high-risk human papillomavirus (HPV) infection is linked to cervical cancer. Two prophylactic virus-like particle (VLP)-based vaccines have been marketed globally for nearly a decade. Here, we review the HPV pseudovirion (PsV)-based assays for the functional assessment of the HPV neutralizing antibodies and the structural basis for these clinically relevant epitopes. The PsV-based neutralization assay was developed to evaluate the efficacy of neutralization antibodies in sera elicited by vaccination or natural infection or to assess the functional characteristics of monoclonal antibodies. Different antibody binding modes were observed when an antibody was complexed with virions, PsVs or VLPs. The neutralizing epitopes are localized on surface loops of the L1 capsid protein, at various locations on the capsomere. Different neutralization antibodies exert their neutralizing function via different mechanisms. Some antibodies neutralize the virions by inducing conformational changes in the viral capsid, which can result in concealing the binding site for a cellular receptor like 1A1D-2 against dengue virus, or inducing premature genome release like E18 against enterovirus 71. Higher-resolution details on the epitope composition of HPV neutralizing antibodies would shed light on the structural basis of the highly efficacious vaccines and aid the design of next generation vaccines. In-depth understanding of epitope composition would ensure the development of function-indicating assays for the comparability exercise to support process improvement or process scale up. Elucidation of the structural elements of the type-specific epitopes would enable rational design of cross-type neutralization via epitope re-engineering or epitope grafting in hybrid VLPs. Copyright © 2015 John Wiley & Sons, Ltd. PMID:26676802
Green's function multiple-scattering theory with a truncated basis set: An augmented-KKR formalism
Alam, Aftab; Khan, Suffian N.; Smirnov, A. V.; Nicholson, D. M.; Johnson, Duane D.
2014-11-01
The Korringa-Kohn-Rostoker (KKR) Green's function, multiple-scattering theory is an efficient site-centered, electronic-structure technique for addressing an assembly of N scatterers. Wave functions are expanded in a spherical-wave basis on each scattering center and indexed up to a maximum orbital and azimuthal number Lmax=(l,mmax), while scattering matrices, which determine spectral properties, are truncated at Lt r=(l,mt r) where phase shifts δl >ltr are negligible. Historically, Lmax is set equal to Lt r, which is correct for large enough Lmax but not computationally expedient; a better procedure retains higher-order (free-electron and single-site) contributions for Lmax>Lt r with δl >ltr set to zero [X.-G. Zhang and W. H. Butler, Phys. Rev. B 46, 7433 (1992), 10.1103/PhysRevB.46.7433]. We present a numerically efficient and accurate augmented-KKR Green's function formalism that solves the KKR equations by exact matrix inversion [R3 process with rank N (ltr+1 ) 2 ] and includes higher-L contributions via linear algebra [R2 process with rank N (lmax+1) 2 ]. The augmented-KKR approach yields properly normalized wave functions, numerically cheaper basis-set convergence, and a total charge density and electron count that agrees with Lloyd's formula. We apply our formalism to fcc Cu, bcc Fe, and L 1 0 CoPt and present the numerical results for accuracy and for the convergence of the total energies, Fermi energies, and magnetic moments versus Lmax for a given Lt r.
Emotional cuing to test attentional network functioning in trait anxiety
Gómez Íñiguez, Consolación; Luis J Fuentes; Martínez-Sánchez, Francisco; Campoy, Guillermo; Montoro, Pedro J.; Palmero Cantero, Francisco
2014-01-01
The Attention Networks Test (ANT) has been widely used to assess the three attentional networks proposed by Posner and his collaborators. Here we present a version of the ANT that uses emotionally laden words as cues to evaluate the functioning of the attention networks and their interactions. University students participated in the task and the results replicated those found in previous studies with the original version of the test. Then, those with extreme scores on a trai...
Spatial Neural Networks and their Functional Samples: Similarities and Differences
Antiqueira, Lucas; Zhao, Liang
2014-01-01
Models of neural networks have proven their utility in the development of learning algorithms in computer science and in the theoretical study of brain dynamics in computational neuroscience. We propose in this paper a spatial neural network model to analyze the important class of functional networks, which are commonly employed in computational studies of clinical brain imaging time series. We developed a simulation framework inspired by multichannel brain surface recordings (more specifical...
Arabidopsis gene co-expression network and its functional modules
Directory of Open Access Journals (Sweden)
Dash Sudhansu
2009-10-01
Full Text Available Abstract Background Biological networks characterize the interactions of biomolecules at a systems-level. One important property of biological networks is the modular structure, in which nodes are densely connected with each other, but between which there are only sparse connections. In this report, we attempted to find the relationship between the network topology and formation of modular structure by comparing gene co-expression networks with random networks. The organization of gene functional modules was also investigated. Results We constructed a genome-wide Arabidopsis gene co-expression network (AGCN by using 1094 microarrays. We then analyzed the topological properties of AGCN and partitioned the network into modules by using an efficient graph clustering algorithm. In the AGCN, 382 hub genes formed a clique, and they were densely connected only to a small subset of the network. At the module level, the network clustering results provide a systems-level understanding of the gene modules that coordinate multiple biological processes to carry out specific biological functions. For instance, the photosynthesis module in AGCN involves a very large number (> 1000 of genes which participate in various biological processes including photosynthesis, electron transport, pigment metabolism, chloroplast organization and biogenesis, cofactor metabolism, protein biosynthesis, and vitamin metabolism. The cell cycle module orchestrated the coordinated expression of hundreds of genes involved in cell cycle, DNA metabolism, and cytoskeleton organization and biogenesis. We also compared the AGCN constructed in this study with a graphical Gaussian model (GGM based Arabidopsis gene network. The photosynthesis, protein biosynthesis, and cell cycle modules identified from the GGM network had much smaller module sizes compared with the modules found in the AGCN, respectively. Conclusion This study reveals new insight into the topological properties of
Triangles as basis to detect communities: an appication to Twitter's network
Abdelsadek, Youcef; Herrmann, Francine; Kacem, Imed; Otjacques, Benoît
2016-01-01
Nowadays, the interest given by the scientific community to the investigation of the data generated by social networks is increasing as much as the exponential increasing of social network data. The data structure complexity is one among the snags, which slowdown their understanding. On the other hand, community detection in social networks helps the analyzers to reveal the structure and the underlying semantic within communities. In this paper we propose an interactive visualization approach relying on our application NLCOMS, which uses synchronous and related views for graph and community visualization. Additionally, we present our algorithm for community detection in networks. A computation study is conducted on instances generated with the LFR [9]-[10] benchmark. Finally, in order to assess our approach on real-world data, we consider the data of the ANR-Info-RSN project. The latter addresses community detection in Twitter.
The Efficiency of a Small-World Functional Brain Network
Institute of Scientific and Technical Information of China (English)
ZHAO Qing-Bai; ZHANG Xiao-Fei; SUI Dan-Ni; ZHOU Zhi-Jin; CHEN Qi-Cai; TANG Yi-Yuan
2012-01-01
We investigate whether the small-world topology of a functional brain network means high information processing efficiency by calculating the correlation between the small-world measures of a functional brain network and behavioral reaction during an imagery task.Functional brain networks are constructed by multichannel eventrelated potential data,in which the electrodes are the nodes and the functional connectivities between them are the edges.The results show that the correlation between small-world measures and reaction time is task-specific,such that in global imagery,there is a positive correlation between the clustering coefficient and reaction time,while in local imagery the average path length is positively correlated with the reaction time.This suggests that the efficiency of a functional brain network is task-dependent.%We investigate whether the small-world topology of a functional brain network means high information processing efficiency by calculating the correlation between the small-world measures of a functional brain network and behavioral reaction during an imagery task. Functional brain networks are constructed by multichannel event-related potential data, in which the electrodes are the nodes and the functional connectivities between them are the edges. The results show that the correlation between small-world measures and reaction time is task-specific, such that in global imagery, there is a positive correlation between the clustering coefficient and reaction time, while in local imagery the average path length is positively correlated with the reaction time. This suggests that the efficiency of a functional brain network is task-dependent.
Stability condition of FAST TCP in high speed network Oil the basis of control theory
Institute of Scientific and Technical Information of China (English)
Zhao Fuzhe; Zhou Jianzhong; Luo Zhimeng; Xiao Yang
2008-01-01
Considering the instability of data transferred existing in high speed network.a near method is proposed for improving the stability using control theory.Under this method,the mathematical model of such a network is established.Stability condition is derived from the mathematical model.Several sivaulation experiments are performed.The results show that the method can increase the stability of data transferred in terms of the congestion window,queue size,and sending rate of the source.
Directory of Open Access Journals (Sweden)
Lukas Falat
2016-01-01
Full Text Available This paper deals with application of quantitative soft computing prediction models into financial area as reliable and accurate prediction models can be very helpful in management decision-making process. The authors suggest a new hybrid neural network which is a combination of the standard RBF neural network, a genetic algorithm, and a moving average. The moving average is supposed to enhance the outputs of the network using the error part of the original neural network. Authors test the suggested model on high-frequency time series data of USD/CAD and examine the ability to forecast exchange rate values for the horizon of one day. To determine the forecasting efficiency, they perform a comparative statistical out-of-sample analysis of the tested model with autoregressive models and the standard neural network. They also incorporate genetic algorithm as an optimizing technique for adapting parameters of ANN which is then compared with standard backpropagation and backpropagation combined with K-means clustering algorithm. Finally, the authors find out that their suggested hybrid neural network is able to produce more accurate forecasts than the standard models and can be helpful in eliminating the risk of making the bad decision in decision-making process.
Falat, Lukas; Marcek, Dusan; Durisova, Maria
2016-01-01
This paper deals with application of quantitative soft computing prediction models into financial area as reliable and accurate prediction models can be very helpful in management decision-making process. The authors suggest a new hybrid neural network which is a combination of the standard RBF neural network, a genetic algorithm, and a moving average. The moving average is supposed to enhance the outputs of the network using the error part of the original neural network. Authors test the suggested model on high-frequency time series data of USD/CAD and examine the ability to forecast exchange rate values for the horizon of one day. To determine the forecasting efficiency, they perform a comparative statistical out-of-sample analysis of the tested model with autoregressive models and the standard neural network. They also incorporate genetic algorithm as an optimizing technique for adapting parameters of ANN which is then compared with standard backpropagation and backpropagation combined with K-means clustering algorithm. Finally, the authors find out that their suggested hybrid neural network is able to produce more accurate forecasts than the standard models and can be helpful in eliminating the risk of making the bad decision in decision-making process. PMID:26977450
Functional expansion representations of artificial neural networks
Gray, W. Steven
1992-01-01
In the past few years, significant interest has developed in using artificial neural networks to model and control nonlinear dynamical systems. While there exists many proposed schemes for accomplishing this and a wealth of supporting empirical results, most approaches to date tend to be ad hoc in nature and rely mainly on heuristic justifications. The purpose of this project was to further develop some analytical tools for representing nonlinear discrete-time input-output systems, which when applied to neural networks would give insight on architecture selection, pruning strategies, and learning algorithms. A long term goal is to determine in what sense, if any, a neural network can be used as a universal approximator for nonliner input-output maps with memory (i.e., realized by a dynamical system). This property is well known for the case of static or memoryless input-output maps. The general architecture under consideration in this project was a single-input, single-output recurrent feedforward network.
Density functional and neural network analysis
DEFF Research Database (Denmark)
Jalkanen, K. J.; Suhai, S.; Bohr, Henrik
dichroism (VCD) intensities. The large changes due to hydration on the structures, relative stability of conformers, and in the VA and VCD spectra observed experimentally are reproduced by the DFT calculations. Furthermore a neural network was constructed for reproducing the inverse scattering data (infer...
Binary higher order neural networks for realizing Boolean functions.
Zhang, Chao; Yang, Jie; Wu, Wei
2011-05-01
In order to more efficiently realize Boolean functions by using neural networks, we propose a binary product-unit neural network (BPUNN) and a binary π-ς neural network (BPSNN). The network weights can be determined by one-step training. It is shown that the addition " σ," the multiplication " π," and two kinds of special weighting operations in BPUNN and BPSNN can implement the logical operators " ∨," " ∧," and " ¬" on Boolean algebra 〈Z(2),∨,∧,¬,0,1〉 (Z(2)={0,1}), respectively. The proposed two neural networks enjoy the following advantages over the existing networks: 1) for a complete truth table of N variables with both truth and false assignments, the corresponding Boolean function can be realized by accordingly choosing a BPUNN or a BPSNN such that at most 2(N-1) hidden nodes are needed, while O(2(N)), precisely 2(N) or at most 2(N), hidden nodes are needed by existing networks; 2) a new network BPUPS based on a collaboration of BPUNN and BPSNN can be defined to deal with incomplete truth tables, while the existing networks can only deal with complete truth tables; and 3) the values of the weights are all simply -1 or 1, while the weights of all the existing networks are real numbers. Supporting numerical experiments are provided as well. Finally, we present the risk bounds of BPUNN, BPSNN, and BPUPS, and then analyze their probably approximately correct learnability. PMID:21427020
The Union of Shortest Path Trees of Functional Brain Networks
Meier, J.; Tewarie, P.; Van Mieghem, P.
2015-01-01
Communication between brain regions is still insufficiently understood. Applying concepts from network science has shown to be successful in gaining insight in the functioning of the brain. Recent work has implicated that especially shortest paths in the structural brain network seem to play a major
Specific neural basis of Chinese idioms processing: an event-related functional MRI study
International Nuclear Information System (INIS)
Objective: To address the neural basis of Chinese idioms processing with different kinds of stimuli using an event-related fMRI design. Methods: Sixteen native Chinese speakers were asked to perform a semantic decision task during fMRI scanning. Three kinds of stimuli were used: Real idioms (Real-idiom condition); Literally plausible phrases (Pseudo-idiom condition, the last character of a real idiom was replaced by a character with similar meaning); Literally implausible strings (Non-idiom condition, the last character of a real idiom was replaced by a character with unrelated meaning). Reaction time and correct rate were recorded at the same time. Results: The error rate was 2.6%, 5.2% and 0.9% (F=3.51, P0.05) for real idioms, pseudo-idioms and wrong idioms, respectively. Similar neural network was activated in all of the three conditions. However, the right hippocampus was only activated in the real idiom condition, and significant activations were found in anterior portion of left inferior frontal gyms (BA47) in real-and pseudo-idiom conditions, but not in non-idiom condition. Conclusion: The right hippocampus plays a specific role in the particular wording of the Chinese idioms. And the left anterior inferior frontal gyms (BA47) may be engaged in the semantic processing of Chinese idioms. The results support the notion that there were specific neural bases for Chinese idioms processing. (authors)
Language networks in children: Evidence from functional MRI studies
Vannest, Jennifer; Karunanayaka, Prasanna R.; Schmithorst, Vincent J.; Szaflarski, Jerzy P; Holland, Scott K.
2009-01-01
We review functional MRI and other neuroimaging studies of language skills in children from infancy to adulthood. These studies show developmental changes in the networks of brain regions supporting language, which can be affected by brain injuries or neurological disorders. Particular aspects of language rely on networks that lateralize to the dominant hemisphere; others rely on bilateral or non-dominant mechanisms. Multiple fMRI tasks for pediatric patients characterize functional brain reo...
The Function Biomedical Informatics Research Network Data Repository
Keator, DB; van Erp, TGM; Turner, JA; Glover, GH; Mueller, BA; Liu, TT; Voyvodic, JT; Rasmussen, J.; Calhoun, VD; Lee, HJ.; Toga, AW; McEwen, S.; Ford, JM; Mathalon, DH; Diaz, M
2016-01-01
© 2015 Elsevier Inc. The Function Biomedical Informatics Research Network (FBIRN) developed methods and tools for conducting multi-scanner functional magnetic resonance imaging (fMRI) studies. Method and tool development were based on two major goals: 1) to assess the major sources of variation in fMRI studies conducted across scanners, including instrumentation, acquisition protocols, challenge tasks, and analysis methods, and 2) to provide a distributed network infrastructure and an associa...
APPLICATION OF CAPACITY ENHANCEMENT FUNCTION IN EUROPEAN ATM NETWORK
Shostak, Olena; National Aviation University, Kyiv; Chynchenko, Yuriy; National Aviation University, Kyiv
2012-01-01
The Capacity Enhancement Function (CEF) sits within the Airspace Network & Capacity section of the ATM Centre of Expertise. It provides a single focal point of coordination for all capacity-related issues, both within the EUROCONTROL Agency and for external stakeholders. The Capacity Enhancement Function acts as a catalyst for establishing and progressing cohesive and timely capacity planning and provision, at European ATM network and local level.
Nodal centrality of functional network in the differentiation of schizophrenia.
Cheng, Hu; Newman, Sharlene; Goñi, Joaquín; Kent, Jerillyn S; Howell, Josselyn; Bolbecker, Amanda; Puce, Aina; O'Donnell, Brian F; Hetrick, William P
2015-10-01
A disturbance in the integration of information during mental processing has been implicated in schizophrenia, possibly due to faulty communication within and between brain regions. Graph theoretic measures allow quantification of functional brain networks. Functional networks are derived from correlations between time courses of brain regions. Group differences between SZ and control groups have been reported for functional network properties, but the potential of such measures to classify individual cases has been little explored. We tested whether the network measure of betweenness centrality could classify persons with schizophrenia and normal controls. Functional networks were constructed for 19 schizophrenic patients and 29 non-psychiatric controls based on resting state functional MRI scans. The betweenness centrality of each node, or fraction of shortest-paths that pass through it, was calculated in order to characterize the centrality of the different regions. The nodes with high betweenness centrality agreed well with hub nodes reported in previous studies of structural and functional networks. Using a linear support vector machine algorithm, the schizophrenia group was differentiated from non-psychiatric controls using the ten nodes with the highest betweenness centrality. The classification accuracy was around 80%, and stable against connectivity thresholding. Better performance was achieved when using the ranks as feature space as opposed to the actual values of betweenness centrality. Overall, our findings suggest that changes in functional hubs are associated with schizophrenia, reflecting a variation of the underlying functional network and neuronal communications. In addition, a specific network property, betweenness centrality, can classify persons with SZ with a high level of accuracy. PMID:26299706
International Nuclear Information System (INIS)
By differentiation of the expressions for the basic s-type integrals previously presented, analytic expressions are here derived for integrals, relevant for quantum-chemistry calculations, involving oscillating Hermite Gaussian functions (OHGF's) and many-center Hermite Gaussian functions (HGF's) of any order. The OHGF is the product of a HGF and a radial trigonometric factor cos(kr), and has been proposed for describing the continuum orbitals in L2 calculations on molecules. The resulting expressions are compact and particularly suitable for numerical implementation on a computer, while the increase in the computational effort of the integral evaluation with respect to the s-type functions is estimated to be of the same order as that found in the standard case of simple Gaussian functions. Applications of the OHGF basis to the calculation of continuum states are presented and compared to the exact results for test cases: the hydrogen atom and the H2+ molecule, in order to discuss advantages and limitations of the proposed approach
Statistical Network Analysis for Functional MRI: Mean Networks and Group Comparisons.
Directory of Open Access Journals (Sweden)
Cedric E Ginestet
2014-05-01
Full Text Available Comparing networks in neuroscience is hard, because the topological properties of a given network are necessarily dependent on the number of edges of that network. This problem arises in the analysis of both weighted and unweighted networks. The term density is often used in this context, in order to refer to the mean edge weight of a weighted network, or to the number of edges in an unweighted one. Comparing families of networks is therefore statistically difficult because differences in topology are necessarily associated with differences in density. In this review paper, we consider this problem from two different perspectives, which include (i the construction of summary networks, such as how to compute and visualize the mean network from a sample of network-valued data points; and (ii how to test for topological differences, when two families of networks also exhibit significant differences in density. In the first instance, we show that the issue of summarizing a family of networks can be conducted by either adopting a mass-univariate approach, which produces a statistical parametric network (SPN, or by directly computing the mean network, provided that a metric has been specified on the space of all networks with a given number of nodes. In the second part of this review, we then highlight the inherent problems associated with the comparison of topological functions of families of networks that differ in density. In particular, we show that a wide range of topological summaries, such as global efficiency and network modularity are highly sensitive to differences in density. Moreover, these problems are not restricted to unweighted metrics, as we demonstrate that the same issues remain present when considering the weighted versions of these metrics. We conclude by encouraging caution, when reporting such statistical comparisons, and by emphasizing the importance of constructing summary networks.
Selectively disrupted functional connectivity networks in type 2 diabetes mellitus
Directory of Open Access Journals (Sweden)
Yaojing eChen
2015-12-01
Full Text Available Background: The high prevalence of type 2 diabetes mellitus (T2DM in individuals over 65 years old and cognitive deficits caused by T2DM have attracted broad attention. The pathophysiological mechanism of T2DM induced cognitive impairments, however, remains poorly understood. Previous studies have suggested that the cognitive impairments can be attributed not merely to local functional and structural abnormalities but also to specific brain networks. Thus, we aimed to investigate the changes of global networks selectively affected by T2DM. Methods: A resting state functional network analysis was conducted to investigate the intrinsic functional connectivity in 37 patients with diabetes and 40 healthy controls which were recruited from local communities in Beijing, China. Results: We found that patients with T2DM exhibited cognitive function declines and functional connectivity disruptions within the default mode network, left frontal parietal network, and sensorimotor network. More importantly, the fasting glucose level was correlated with abnormal functional connectivity.Conclusions: These findings could help to understand the neural mechanisms of cognitive impairments in T2DM and provide potential neuroimaging biomarkers that may be used for early diagnosis and intervention in cognitive decline.
Leclerc, Arnaud
2014-01-01
We propose an iterative method for computing vibrational spectra that significantly reduces the memory cost of calculations. It uses a direct product primitive basis, but does not require storing vectors with as many components as there are product basis functions. Wavefunctions are represented in a basis each of whose functions is a sum of products (SOP) and the factorizable structure of the Hamiltonian is exploited. If the factors of the SOP basis functions are properly chosen, wavefunctions are linear combinations of a small number of SOP basis functions. The SOP basis functions are generated using a shifted block power method. The factors are refined with a rank reduction algorithm to cap the number of terms in a SOP basis function. The ideas are tested on a 20-D model Hamiltonian and a realistic CH$_3$CN (12 dimensional) potential. For the 20-D problem, to use a standard direct product iterative approach one would need to store vectors with about $10^{20}$ components and would hence require about $8 \\tim...
Functional brain networks associated with eating behaviors in obesity
Park, Bo-yong; Seo, Jongbum; Park, Hyunjin
2016-01-01
Obesity causes critical health problems including diabetes and hypertension that affect billions of people worldwide. Obesity and eating behaviors are believed to be closely linked but their relationship through brain networks has not been fully explored. We identified functional brain networks associated with obesity and examined how the networks were related to eating behaviors. Resting state functional magnetic resonance imaging (MRI) scans were obtained for 82 participants. Data were from an equal number of people of healthy weight (HW) and non-healthy weight (non-HW). Connectivity matrices were computed with spatial maps derived using a group independent component analysis approach. Brain networks and associated connectivity parameters with significant group-wise differences were identified and correlated with scores on a three-factor eating questionnaire (TFEQ) describing restraint, disinhibition, and hunger eating behaviors. Frontoparietal and cerebellum networks showed group-wise differences between HW and non-HW groups. Frontoparietal network showed a high correlation with TFEQ disinhibition scores. Both frontoparietal and cerebellum networks showed a high correlation with body mass index (BMI) scores. Brain networks with significant group-wise differences between HW and non-HW groups were identified. Parts of the identified networks showed a high correlation with eating behavior scores. PMID:27030024
Functional brain networks associated with eating behaviors in obesity.
Park, Bo-Yong; Seo, Jongbum; Park, Hyunjin
2016-01-01
Obesity causes critical health problems including diabetes and hypertension that affect billions of people worldwide. Obesity and eating behaviors are believed to be closely linked but their relationship through brain networks has not been fully explored. We identified functional brain networks associated with obesity and examined how the networks were related to eating behaviors. Resting state functional magnetic resonance imaging (MRI) scans were obtained for 82 participants. Data were from an equal number of people of healthy weight (HW) and non-healthy weight (non-HW). Connectivity matrices were computed with spatial maps derived using a group independent component analysis approach. Brain networks and associated connectivity parameters with significant group-wise differences were identified and correlated with scores on a three-factor eating questionnaire (TFEQ) describing restraint, disinhibition, and hunger eating behaviors. Frontoparietal and cerebellum networks showed group-wise differences between HW and non-HW groups. Frontoparietal network showed a high correlation with TFEQ disinhibition scores. Both frontoparietal and cerebellum networks showed a high correlation with body mass index (BMI) scores. Brain networks with significant group-wise differences between HW and non-HW groups were identified. Parts of the identified networks showed a high correlation with eating behavior scores. PMID:27030024
Visualizing and Clustering Protein Similarity Networks: Sequences, Structures, and Functions.
Mai, Te-Lun; Hu, Geng-Ming; Chen, Chi-Ming
2016-07-01
Research in the recent decade has demonstrated the usefulness of protein network knowledge in furthering the study of molecular evolution of proteins, understanding the robustness of cells to perturbation, and annotating new protein functions. In this study, we aimed to provide a general clustering approach to visualize the sequence-structure-function relationship of protein networks, and investigate possible causes for inconsistency in the protein classifications based on sequences, structures, and functions. Such visualization of protein networks could facilitate our understanding of the overall relationship among proteins and help researchers comprehend various protein databases. As a demonstration, we clustered 1437 enzymes by their sequences and structures using the minimum span clustering (MSC) method. The general structure of this protein network was delineated at two clustering resolutions, and the second level MSC clustering was found to be highly similar to existing enzyme classifications. The clustering of these enzymes based on sequence, structure, and function information is consistent with each other. For proteases, the Jaccard's similarity coefficient is 0.86 between sequence and function classifications, 0.82 between sequence and structure classifications, and 0.78 between structure and function classifications. From our clustering results, we discussed possible examples of divergent evolution and convergent evolution of enzymes. Our clustering approach provides a panoramic view of the sequence-structure-function network of proteins, helps visualize the relation between related proteins intuitively, and is useful in predicting the structure and function of newly determined protein sequences. PMID:27267620
A spiking neural network architecture for nonlinear function approximation.
Iannella, N; Back, A D
2001-01-01
Multilayer perceptrons have received much attention in recent years due to their universal approximation capabilities. Normally, such models use real valued continuous signals, although they are loosely based on biological neuronal networks that encode signals using spike trains. Spiking neural networks are of interest both from a biological point of view and in terms of a method of robust signaling in particularly noisy or difficult environments. It is important to consider networks based on spike trains. A basic question that needs to be considered however, is what type of architecture can be used to provide universal function approximation capabilities in spiking networks? In this paper, we propose a spiking neural network architecture using both integrate-and-fire units as well as delays, that is capable of approximating a real valued function mapping to within a specified degree of accuracy. PMID:11665783
Synchronization of Parallel processes on the basis of Petri's networks with operated transitions
International Nuclear Information System (INIS)
Formal models of parallel processes have been considered on the basis of the mathematical theory of Petri's nets. Another simpler method has been proposed for introducing the time into the net formalism at the level of the external control. This method excludes the violation of the originally simple developed and laconic structure of the Petri's net
Structural and Functional Basis for Substrate Specificity and Catalysis of Levan Fructotransferase*
Park, Jinseo; Kim, Myung-Il; Park, Young-Don; Shin, Inchul; Cha, Jaeho; Kim, Chul Ho; Rhee, Sangkee
2012-01-01
Levan is β-2,6-linked polymeric fructose and serves as reserve carbohydrate in some plants and microorganisms. Mobilization of fructose is usually mediated by enzymes such as glycoside hydrolase (GH), typically releasing a monosaccharide as a product. The enzyme levan fructotransferase (LFTase) of the GH32 family catalyzes an intramolecular fructosyl transfer reaction and results in production of cyclic difructose dianhydride, thus exhibiting a novel substrate specificity. The mechanism by which LFTase carries out these functions via the structural fold conserved in the GH32 family is unknown. Here, we report the crystal structure of LFTase from Arthrobacter ureafaciens in apo form, as well as in complexes with sucrose and levanbiose, a difructosacchride with a β-2,6-glycosidic linkage. Despite the similarity of its two-domain structure to members of the GH32 family, LFTase contains an active site that accommodates a difructosaccharide using the −1 and −2 subsites. This feature is unique among GH32 proteins and is facilitated by small side chain residues in the loop region of a catalytic β-propeller N-domain, which is conserved in the LFTase family. An additional oligosaccharide-binding site was also characterized in the β-sandwich C-domain, supporting its role in carbohydrate recognition. Together with functional analysis, our data provide a molecular basis for the catalytic mechanism of LFTase and suggest functional variations from other GH32 family proteins, notwithstanding the conserved structural elements. PMID:22810228
Structural and functional basis for substrate specificity and catalysis of levan fructotransferase.
Park, Jinseo; Kim, Myung-Il; Park, Young-Don; Shin, Inchul; Cha, Jaeho; Kim, Chul Ho; Rhee, Sangkee
2012-09-01
Levan is β-2,6-linked polymeric fructose and serves as reserve carbohydrate in some plants and microorganisms. Mobilization of fructose is usually mediated by enzymes such as glycoside hydrolase (GH), typically releasing a monosaccharide as a product. The enzyme levan fructotransferase (LFTase) of the GH32 family catalyzes an intramolecular fructosyl transfer reaction and results in production of cyclic difructose dianhydride, thus exhibiting a novel substrate specificity. The mechanism by which LFTase carries out these functions via the structural fold conserved in the GH32 family is unknown. Here, we report the crystal structure of LFTase from Arthrobacter ureafaciens in apo form, as well as in complexes with sucrose and levanbiose, a difructosacchride with a β-2,6-glycosidic linkage. Despite the similarity of its two-domain structure to members of the GH32 family, LFTase contains an active site that accommodates a difructosaccharide using the -1 and -2 subsites. This feature is unique among GH32 proteins and is facilitated by small side chain residues in the loop region of a catalytic β-propeller N-domain, which is conserved in the LFTase family. An additional oligosaccharide-binding site was also characterized in the β-sandwich C-domain, supporting its role in carbohydrate recognition. Together with functional analysis, our data provide a molecular basis for the catalytic mechanism of LFTase and suggest functional variations from other GH32 family proteins, notwithstanding the conserved structural elements. PMID:22810228
Improved radial basis function methods for multi-dimensional option pricing
Pettersson, Ulrika; Larsson, Elisabeth; Marcusson, Gunnar; Persson, Jonas
2008-12-01
In this paper, we have derived a radial basis function (RBF) based method for the pricing of financial contracts by solving the Black-Scholes partial differential equation. As an example of a financial contract that can be priced with this method we have chosen the multi-dimensional European basket call option. We have shown numerically that our scheme is second-order accurate in time and spectrally accurate in space for constant shape parameter. For other non-optimal choices of shape parameter values, the resulting convergence rate is algebraic. We propose an adapted node point placement that improves the accuracy compared with a uniform distribution. Compared with an adaptive finite difference method, the RBF method is 20-40 times faster in one and two space dimensions and has approximately the same memory requirements.
On fast computation of finite-time coherent sets using radial basis functions.
Froyland, Gary; Junge, Oliver
2015-08-01
Finite-time coherent sets inhibit mixing over finite times. The most expensive part of the transfer operator approach to detecting coherent sets is the construction of the operator itself. We present a numerical method based on radial basis function collocation and apply it to a recent transfer operator construction [G. Froyland, "Dynamic isoperimetry and the geometry of Lagrangian coherent structures," Nonlinearity (unpublished); preprint arXiv:1411.7186] that has been designed specifically for purely advective dynamics. The construction [G. Froyland, "Dynamic isoperimetry and the geometry of Lagrangian coherent structures," Nonlinearity (unpublished); preprint arXiv:1411.7186] is based on a "dynamic" Laplace operator and minimises the boundary size of the coherent sets relative to their volume. The main advantage of our new approach is a substantial reduction in the number of Lagrangian trajectories that need to be computed, leading to large speedups in the transfer operator analysis when this computation is costly. PMID:26328580
Improved radial basis function approach with the odd-even corrections
Niu, Z M; Liang, H Z; Niu, Y F; Guo, J Y
2016-01-01
The radial basis function (RBF) approach has been used to improve the mass predictions of nuclear models. However, systematic deviations exist between the improved masses and the experimental data for nuclei with different odd-even parities of ($Z$, $N$), i.e., the (even $Z$, even $N$), (even $Z$, odd $N$), (odd $Z$, even $N$), and (odd $Z$, odd $N$). By separately training the RBF for these four different groups, it is found that the systematic odd-even deviations can be cured in a large extend and the predictive power of nuclear mass models can thus be further improved. Moreover, this new approach can better reproduce the single-nucleon separation energies. Based on the latest version of Weizs\\"acker-Skyrme model WS4, the root-mean-square deviation of the improved masses with respect to known data falls to $135$ keV, approaching the chaos-related unpredictability limit ($\\sim 100$ keV).
Directory of Open Access Journals (Sweden)
Sharma Rakesh
2004-05-01
Full Text Available Abstract Functional magnetic resonance imaging (fMRI is recently developing as imaging modality used for mapping hemodynamics of neuronal and motor event related tissue blood oxygen level dependence (BOLD in terms of brain activation. Image processing is performed by segmentation and registration methods. Segmentation algorithms provide brain surface-based analysis, automated anatomical labeling of cortical fields in magnetic resonance data sets based on oxygen metabolic state. Registration algorithms provide geometric features using two or more imaging modalities to assure clinically useful neuronal and motor information of brain activation. This review article summarizes the physiological basis of fMRI signal, its origin, contrast enhancement, physical factors, anatomical labeling by segmentation, registration approaches with examples of visual and motor activity in brain. Latest developments are reviewed for clinical applications of fMRI along with other different neurophysiological and imaging modalities.
Basis Function Repetitive And Feedback Control With Application To A Particle Accelerator
Akogyeram, R A
2002-01-01
The thesis addresses three problem areas within repetitive control. Firstly, it addresses issues concerning the ability of repetitive control and feedback control systems to eliminate periodic disturbances occurring above the Nyquist frequency of the hardware. Methods are developed for decomposing and unfolding notch filter or comb filter feedback control so that disturbances above Nyquist frequency can be canceled. Phenomena affecting final error levels are discussed, including error in unfolding, coarseness of zero-order hold cancellation, and waterbed effects in the feedback control system frequency response for different sample rates. Secondly, matched basis function repetitive control laws are developed for batch mode and real time implementation to converge to zero tracking error in the presence of periodic disturbances. For both control methods, conditions are given that guarantee asymptotic and monotonic convergence. Stability tests are formulated to examine stability when the period of a disturbance ...
Vibration measurement based on electronic speckle pattern interferometry and radial basis function
Dai, Xiangjun; Shao, Xinxing; Geng, Zhencen; Yang, Fujun; Jiang, Yijun; He, Xiaoyuan
2015-11-01
A method incorporating amplitude-fluctuation electronic speckle pattern interferometry (AF-ESPI) with radial basis function (RBF) was proposed to investigate vibration characteristics of structures. The vibration patterns were obtained by AF-ESPI. A novel pre-filtering RBF method was presented to improve the quality of patterns. The out-of-plane vibration amplitude was rebuilt after fringe analysis. Ideal pre-filtering widow sizes for the presented RBF were given based on numerical experiments. For validation, an aluminum circular plate with fixed boundary was determined and compared with FEM, confirming the effectiveness of the proposed method. Finally, vibration characteristics of sandwich panels with honeycomb core were measured. The influence of presence of a pre-notch at different location was also investigated.
International Nuclear Information System (INIS)
Full text: This paper describes the solution of a steady-state natural convection problem in porous media by the radial basis function collocation method (RBFCM). This meshless (polygon-free) numerical method is for coupled set of mass, momentum, and energy equations in two dimensions structured by the augmented scaled second order thin plate splines. The solution is formulated in primitive variables and involves iterative treatment of coupled pressure, velocity, pressure correction, velocity correction, and energy equations. Numerical examples include convergence studies with different collocation point arrangements for a two-dimensional differentially heated rectangular cavity problem at filtration Rayleigh numbers Ra* = 25, 50 and 100, and aspect ratios A = 1/2, 1, and 2. The solution is assessed by comparison with reference results of the fine-mesh finite volume method in terms of mid-plane velocity components, mid-plane and insulated surface temperatures, streamfunction minimum, and Nusselt number. Refs. 7 (author)
Joint Modelling of Structural and Functional Brain Networks
DEFF Research Database (Denmark)
Andersen, Kasper Winther; Herlau, Tue; Mørup, Morten;
-parametric Bayesian network model which allows for joint modelling and integration of multiple networks. We demonstrate the model’s ability to detect vertices that share structure across networks jointly in functional MRI (fMRI) and diffusion MRI (dMRI) data. Using two fMRI and dMRI scans per subject, we establish...... significant structures that are consistently shared across subjects and data splits. This provides an unsupervised approach for modeling of structure-function relations in the brain and provides a general framework for multimodal integration....
Density-dependence of functional spiking networks in vitro
Energy Technology Data Exchange (ETDEWEB)
Ham, Michael I [Los Alamos National Laboratory; Gintautuas, Vadas [Los Alamos National Laboratory; Rodriguez, Marko A [Los Alamos National Laboratory; Bettencourt, Luis M A [Los Alamos National Laboratory; Bennett, Ryan [UNIV OF NORTH TEXAS; Santa Maria, Cara L [UNIV OF NORTH TEXAS
2008-01-01
During development, the mammalian brain differentiates into specialized regions with unique functional abilities. While many factors contribute to this functional specialization, we explore the effect neuronal density can have on neuronal interactions. Two types of networks, dense (50,000 neurons and glia support cells) and sparse (12,000 neurons and glia support cells), are studied. A competitive first response model is applied to construct activation graphs that represent pairwise neuronal interactions. By observing the evolution of these graphs during development in vitro we observe that dense networks form activation connections earlier than sparse networks, and that link-!llltropy analysis of the resulting dense activation graphs reveals that balanced directional connections dominate. Information theoretic measures reveal in addition that early functional information interactions (of order 3) are synergetic in both dense and sparse networks. However, during development in vitro, such interactions become redundant in dense, but not sparse networks. Large values of activation graph link-entropy correlate strongly with redundant ensembles observed in the dense networks. Results demonstrate differences between dense and sparse networks in terms of informational groups, pairwise relationships, and activation graphs. These differences suggest that variations in cell density may result in different functional specialization of nervous system tissue also in vivo.
Boiling detection on the basis neutron noise analysis by neural network
International Nuclear Information System (INIS)
Accident nature which is ruling the nuclear fission and the influence of different phenomena on the cross section and multiplication factor, cause perturbations in the neutron flux, which is, named neutron noise. Neutron noise analysis gives some useful information about the sources of produced noise. One of the important sources of neutron noise in BWR is changing the level of local moderator via production of steam bubbles due of boiling. Here, by designing an appropriate neural network, it has been tried to simulate the mapping between neutron noise and local void fraction. Auto power spectral density and cross power spectral density of the neutron noise that are provided by neutron detectors in reactor core used as input data. By testing several different the network which have 2, 3, 4, or 5 layers with 3, 5 and 10 neurons in their hidden layers, the optimum network was found as feed forward multi layer with 4 layers and 6 neurons in it's hidden layers. The results show that the network gives acceptable rate of void fraction when the local void fraction is more than 30%
International Nuclear Information System (INIS)
A density functional theory (DFT) based composite electronic structure approach is proposed to efficiently compute structures and interaction energies in large chemical systems. It is based on the well-known and numerically robust Perdew-Burke-Ernzerhoff (PBE) generalized-gradient-approximation in a modified global hybrid functional with a relatively large amount of non-local Fock-exchange. The orbitals are expanded in Ahlrichs-type valence-double zeta atomic orbital (AO) Gaussian basis sets, which are available for many elements. In order to correct for the basis set superposition error (BSSE) and to account for the important long-range London dispersion effects, our well-established atom-pairwise potentials are used. In the design of the new method, particular attention has been paid to an accurate description of structural parameters in various covalent and non-covalent bonding situations as well as in periodic systems. Together with the recently proposed three-fold corrected (3c) Hartree-Fock method, the new composite scheme (termed PBEh-3c) represents the next member in a hierarchy of “low-cost” electronic structure approaches. They are mainly free of BSSE and account for most interactions in a physically sound and asymptotically correct manner. PBEh-3c yields good results for thermochemical properties in the huge GMTKN30 energy database. Furthermore, the method shows excellent performance for non-covalent interaction energies in small and large complexes. For evaluating its performance on equilibrium structures, a new compilation of standard test sets is suggested. These consist of small (light) molecules, partially flexible, medium-sized organic molecules, molecules comprising heavy main group elements, larger systems with long bonds, 3d-transition metal systems, non-covalently bound complexes (S22 and S66×8 sets), and peptide conformations. For these sets, overall deviations from accurate reference data are smaller than for various other tested DFT
Energy Technology Data Exchange (ETDEWEB)
Grimme, Stefan, E-mail: grimme@thch.uni-bonn.de; Brandenburg, Jan Gerit; Bannwarth, Christoph; Hansen, Andreas [Mulliken Center for Theoretical Chemistry, Institut für Physikalische und Theoretische Chemie, Rheinische Friedrich-Wilhelms Universität Bonn, Beringstraße 4, 53115 Bonn (Germany)
2015-08-07
A density functional theory (DFT) based composite electronic structure approach is proposed to efficiently compute structures and interaction energies in large chemical systems. It is based on the well-known and numerically robust Perdew-Burke-Ernzerhoff (PBE) generalized-gradient-approximation in a modified global hybrid functional with a relatively large amount of non-local Fock-exchange. The orbitals are expanded in Ahlrichs-type valence-double zeta atomic orbital (AO) Gaussian basis sets, which are available for many elements. In order to correct for the basis set superposition error (BSSE) and to account for the important long-range London dispersion effects, our well-established atom-pairwise potentials are used. In the design of the new method, particular attention has been paid to an accurate description of structural parameters in various covalent and non-covalent bonding situations as well as in periodic systems. Together with the recently proposed three-fold corrected (3c) Hartree-Fock method, the new composite scheme (termed PBEh-3c) represents the next member in a hierarchy of “low-cost” electronic structure approaches. They are mainly free of BSSE and account for most interactions in a physically sound and asymptotically correct manner. PBEh-3c yields good results for thermochemical properties in the huge GMTKN30 energy database. Furthermore, the method shows excellent performance for non-covalent interaction energies in small and large complexes. For evaluating its performance on equilibrium structures, a new compilation of standard test sets is suggested. These consist of small (light) molecules, partially flexible, medium-sized organic molecules, molecules comprising heavy main group elements, larger systems with long bonds, 3d-transition metal systems, non-covalently bound complexes (S22 and S66×8 sets), and peptide conformations. For these sets, overall deviations from accurate reference data are smaller than for various other tested DFT
Grimme, Stefan; Brandenburg, Jan Gerit; Bannwarth, Christoph; Hansen, Andreas
2015-08-01
A density functional theory (DFT) based composite electronic structure approach is proposed to efficiently compute structures and interaction energies in large chemical systems. It is based on the well-known and numerically robust Perdew-Burke-Ernzerhoff (PBE) generalized-gradient-approximation in a modified global hybrid functional with a relatively large amount of non-local Fock-exchange. The orbitals are expanded in Ahlrichs-type valence-double zeta atomic orbital (AO) Gaussian basis sets, which are available for many elements. In order to correct for the basis set superposition error (BSSE) and to account for the important long-range London dispersion effects, our well-established atom-pairwise potentials are used. In the design of the new method, particular attention has been paid to an accurate description of structural parameters in various covalent and non-covalent bonding situations as well as in periodic systems. Together with the recently proposed three-fold corrected (3c) Hartree-Fock method, the new composite scheme (termed PBEh-3c) represents the next member in a hierarchy of "low-cost" electronic structure approaches. They are mainly free of BSSE and account for most interactions in a physically sound and asymptotically correct manner. PBEh-3c yields good results for thermochemical properties in the huge GMTKN30 energy database. Furthermore, the method shows excellent performance for non-covalent interaction energies in small and large complexes. For evaluating its performance on equilibrium structures, a new compilation of standard test sets is suggested. These consist of small (light) molecules, partially flexible, medium-sized organic molecules, molecules comprising heavy main group elements, larger systems with long bonds, 3d-transition metal systems, non-covalently bound complexes (S22 and S66×8 sets), and peptide conformations. For these sets, overall deviations from accurate reference data are smaller than for various other tested DFT methods
Hyper-connectivity of functional networks for brain disease diagnosis.
Jie, Biao; Wee, Chong-Yaw; Shen, Dinggang; Zhang, Daoqiang
2016-08-01
Exploring structural and functional interactions among various brain regions enables better understanding of pathological underpinnings of neurological disorders. Brain connectivity network, as a simplified representation of those structural and functional interactions, has been widely used for diagnosis and classification of neurodegenerative diseases, especially for Alzheimer's disease (AD) and its early stage - mild cognitive impairment (MCI). However, the conventional functional connectivity network is usually constructed based on the pairwise correlation among different brain regions and thus ignores their higher-order relationships. Such loss of high-order information could be important for disease diagnosis, since neurologically a brain region predominantly interacts with more than one other brain regions. Accordingly, in this paper, we propose a novel framework for estimating the hyper-connectivity network of brain functions and then use this hyper-network for brain disease diagnosis. Here, the functional connectivity hyper-network denotes a network where each of its edges representing the interactions among multiple brain regions (i.e., an edge can connect with more than two brain regions), which can be naturally represented by a hyper-graph. Specifically, we first construct connectivity hyper-networks from the resting-state fMRI (R-fMRI) time series by using sparse representation. Then, we extract three sets of brain-region specific features from the connectivity hyper-networks, and further exploit a manifold regularized multi-task feature selection method to jointly select the most discriminative features. Finally, we use multi-kernel support vector machine (SVM) for classification. The experimental results on both MCI dataset and attention deficit hyperactivity disorder (ADHD) dataset demonstrate that, compared with the conventional connectivity network-based methods, the proposed method can not only improve the classification performance, but also help
Assortative mixing in functional brain networks during epileptic seizures
Bialonski, Stephan
2013-01-01
We investigate assortativity of functional brain networks before, during, and after one-hundred epileptic seizures with different anatomical onset locations. We construct binary functional networks from multi-channel electroencephalographic data recorded from 60 epilepsy patients, and from time-resolved estimates of the assortativity coefficient we conclude that positive degree-degree correlations are inherent to seizure dynamics. While seizures evolve, an increasing assortativity indicates a segregation of the underlying functional network into groups of brain regions that are only sparsely interconnected, if at all. Interestingly, assortativity decreases already prior to seizure end. Together with previous observations of characteristic temporal evolutions of global statistical properties and synchronizability of epileptic brain networks, our findings may help to gain deeper insights into the complicated dynamics underlying generation, propagation, and termination of seizures.
Cornew, R W; Morse, P M
1975-08-15
After 4 years of operation the NERComP network is now a self-supporting success. Some of the reasons for its success are that (i) the network started small and built up utilization; (ii) the members, through monthly trustee meetings, practiced "participatory management" from the outset; (iii) unlike some networks, NERComP appealed to individual academic and research users who were terminal-oriented and who controlled their own budgets; (iv) the compactness of the New England region made it an ideal laboratory for testing networking concepts; and (v) a dedicated staff was willing to work hard in the face of considerable uncertainty. While the major problems were "political, organizational and economic" (1) we have found that they can be solved if the network meets real needs. We have also found that it is difficult to proceed beyond a certain point without investing responsibility and authority in the networking organization. Conversely, there is a need to distribute some responsibilities such as marketing and user services back to the member institutions. By adopting a modest starting point and achieving limited goals the necessary trust and working relationships between institutions can be built. In our case the necessary planning has been facilitated by recognizing three distinct network functions: governance, user services, and technical operations. Separating out the three essential networing tasks and dealing with each individually through advisory committees, each with its own staff coordinator, has overcome a distracting tendency to address all issues at once. It has also provided an element of feedback between the end user and the supplier not usually present in networking activity. The success of NERComP demonstrates that a distributive-type network can work. Our experiences in New England-which, because of its numerous colleges and universities free from domination by any single institution, is a microcosm for academic computing in the United States
Uncovering Biological Network Function via Graphlet Degree Signatures
Directory of Open Access Journals (Sweden)
Nataša Pržulj
2008-01-01
Full Text Available Motivation: Proteins are essential macromolecules of life and thus understanding their function is of great importance. The number of functionally unclassiﬁed proteins is large even for simple and well studied organisms such as baker’s yeast. Methods for determining protein function have shifted their focus from targeting speciﬁc proteins based solely on sequence homology to analyses of the entire proteome based on protein-protein interaction (PPI networks. Since proteins interact to perform a certain function, analyzing structural properties of PPI networks may provide useful clues about the biological function of individual proteins, protein complexes they participate in, and even larger subcellular machines.Results: We design a sensitive graph theoretic method for comparing local structures of node neighborhoods that demonstrates that in PPI networks, biological function of a node and its local network structure are closely related. The method summarizes a protein’s local topology in a PPI network into the vector of graphlet degrees called the signature of the protein and computes the signature similarities between all protein pairs. We group topologically similar proteins under this measure in a PPI network and show that these protein groups belong to the same protein complexes, perform the same biological functions, are localized in the same subcellular compartments, and have the same tissue expressions. Moreover, we apply our technique on a proteome-scale network data and infer biological function of yet unclassiﬁed proteins demonstrating that our method can provide valuable guidelines for future experimental research such as disease protein prediction.Availability: Data is available upon request.
SYNERGY IN DEMAND MANAGEMENT ON THE EDUCATIONAL SERVICES MARKET ON THE BASIS OF EDUCATION NETWORKS
Korenkova Natalia Anatolyevna
2012-01-01
Purpose: to review the approach to social technology of demand management on educational services on the basis of synergetic approach allowing due to selforganizing processes to provide balance of actors interests in the market of educational services. Methodology: For the analysis of the basic synergetic approach properties applicable to management of social structures, the system approach within the paradigm of social behavior, as well as methods of abstraction, analysis, synthesis and mode...
Radial Basis Neural Networks Based Fault Detection and Isolation Scheme for Pneumatic Actuator
K. Prabakaran; S, Kaushik; R, Mouleeshuwarapprabu
2014-01-01
Fault diagnosis is an ongoing significant research field due to the constantly increasing need for maintainability, reliability and safety of industrial plants. The pneumatic actuators are installed in harsh environment: high temperature, pressure, aggressive media and vibration, etc. This influenced the pneumatic actuator predicted life time. The failures in pneumatic actuator cause forces the installation shut down and may also determine the final quality of the product. A Radial Basis Neur...
Distributed Storage Healthcare — The Basis of a Planet-Wide Public Health Care Network
Kakouros, Nikolaos
2013-01-01
Background: As health providers move towards higher levels of information technology (IT) integration, they become increasingly dependent on the availability of the electronic health record (EHR). Current solutions of individually managed storage by each healthcare provider focus on efforts to ensure data security, availability and redundancy. Such models, however, scale poorly to a future of a planet-wide public health-care network (PWPHN). Our aim was to review the research literature on di...
Mapping Multiplex Hubs in Human Functional Brain Networks.
De Domenico, Manlio; Sasai, Shuntaro; Arenas, Alex
2016-01-01
Typical brain networks consist of many peripheral regions and a few highly central ones, i.e., hubs, playing key functional roles in cerebral inter-regional interactions. Studies have shown that networks, obtained from the analysis of specific frequency components of brain activity, present peculiar architectures with unique profiles of region centrality. However, the identification of hubs in networks built from different frequency bands simultaneously is still a challenging problem, remaining largely unexplored. Here we identify each frequency component with one layer of a multiplex network and face this challenge by exploiting the recent advances in the analysis of multiplex topologies. First, we show that each frequency band carries unique topological information, fundamental to accurately model brain functional networks. We then demonstrate that hubs in the multiplex network, in general different from those ones obtained after discarding or aggregating the measured signals as usual, provide a more accurate map of brain's most important functional regions, allowing to distinguish between healthy and schizophrenic populations better than conventional network approaches. PMID:27471443
EEG-based research on brain functional networks in cognition.
Wang, Niannian; Zhang, Li; Liu, Guozhong
2015-01-01
Recently, exploring the cognitive functions of the brain by establishing a network model to understand the working mechanism of the brain has become a popular research topic in the field of neuroscience. In this study, electroencephalography (EEG) was used to collect data from subjects given four different mathematical cognitive tasks: recite numbers clockwise and counter-clockwise, and letters clockwise and counter-clockwise to build a complex brain function network (BFN). By studying the connectivity features and parameters of those brain functional networks, it was found that the average clustering coefficient is much larger than its corresponding random network and the average shortest path length is similar to the corresponding random networks, which clearly shows the characteristics of the small-world network. The brain regions stimulated during the experiment are consistent with traditional cognitive science regarding learning, memory, comprehension, and other rational judgment results. The new method of complex networking involves studying the mathematical cognitive process of reciting, providing an effective research foundation for exploring the relationship between brain cognition and human learning skills and memory. This could help detect memory deficits early in young and mentally handicapped children, and help scientists understand the causes of cognitive brain disorders. PMID:26405867
INFRAFRONTIER: a European resource for studying the functional basis of human disease.
Raess, Michael; de Castro, Ana Ambrosio; Gailus-Durner, Valérie; Fessele, Sabine; Hrabě de Angelis, Martin
2016-08-01
Ageing research and more generally the study of the functional basis of human diseases profit enormously from the large-scale approaches and resources in mouse functional genomics: systematic targeted mutation of the mouse genome, systemic phenotyping in mouse clinics, and the archiving and distribution of the mouse resources in public repositories. INFRAFRONTIER, the European research infrastructure for the development, systemic phenotyping, archiving and distribution of mammalian models, offers access to sustainable mouse resources for biomedical research. INFRAFRONTIER promotes the global sharing of high-quality resources and data and thus contributes to data reproducibility and animal welfare. INFRAFRONTIER puts great effort into international standardisation and quality control and into technology development to improve and expand experimental protocols, reduce the use of animals in research and increase the reproducibility of results. In concert with the research community and the International Mouse Phenotyping Consortium (IMPC), INFRAFRONTIER is currently developing new pilot platforms and services for the research on ageing and age-related diseases. PMID:27262858
ABOUT BLENDED LEARNING ON THE BASIS OF FUNCTIONING OF THE ACTIVITY TRIANGLE
Directory of Open Access Journals (Sweden)
Evgeny Konstantinovich Vasin
2016-01-01
Full Text Available The article considers an actual nowadys problem of Informatization of the educational process in secondary school. In conditions of global Informatization of society and education as a basic social institution, the personal condition of the person becomes the determining factor of its success basing on the willingness and ability of the individual to self-improvement that classroom learning system cannot form.A promising direction of Informatization of school education is to build the educational process on the ideas of blended learning, combining face-to-face and distance learning activities.The study provides a rationale for blended learning that consists of distance learning of theoretical material and practical face-to-face activities in the context of educational institutions, which are realized on the basis of functioning of activity of the triangle «student – teacher – RAR» in nhich some of the functions of training an transferred to e-educational resources.
Development of large-scale functional brain networks in children.
Directory of Open Access Journals (Sweden)
Kaustubh Supekar
2009-07-01
Full Text Available The ontogeny of large-scale functional organization of the human brain is not well understood. Here we use network analysis of intrinsic functional connectivity to characterize the organization of brain networks in 23 children (ages 7-9 y and 22 young-adults (ages 19-22 y. Comparison of network properties, including path-length, clustering-coefficient, hierarchy, and regional connectivity, revealed that although children and young-adults' brains have similar "small-world" organization at the global level, they differ significantly in hierarchical organization and interregional connectivity. We found that subcortical areas were more strongly connected with primary sensory, association, and paralimbic areas in children, whereas young-adults showed stronger cortico-cortical connectivity between paralimbic, limbic, and association areas. Further, combined analysis of functional connectivity with wiring distance measures derived from white-matter fiber tracking revealed that the development of large-scale brain networks is characterized by weakening of short-range functional connectivity and strengthening of long-range functional connectivity. Importantly, our findings show that the dynamic process of over-connectivity followed by pruning, which rewires connectivity at the neuronal level, also operates at the systems level, helping to reconfigure and rebalance subcortical and paralimbic connectivity in the developing brain. Our study demonstrates the usefulness of network analysis of brain connectivity to elucidate key principles underlying functional brain maturation, paving the way for novel studies of disrupted brain connectivity in neurodevelopmental disorders such as autism.
Development of large-scale functional brain networks in children.
Supekar, Kaustubh; Musen, Mark; Menon, Vinod
2009-07-01
The ontogeny of large-scale functional organization of the human brain is not well understood. Here we use network analysis of intrinsic functional connectivity to characterize the organization of brain networks in 23 children (ages 7-9 y) and 22 young-adults (ages 19-22 y). Comparison of network properties, including path-length, clustering-coefficient, hierarchy, and regional connectivity, revealed that although children and young-adults' brains have similar "small-world" organization at the global level, they differ significantly in hierarchical organization and interregional connectivity. We found that subcortical areas were more strongly connected with primary sensory, association, and paralimbic areas in children, whereas young-adults showed stronger cortico-cortical connectivity between paralimbic, limbic, and association areas. Further, combined analysis of functional connectivity with wiring distance measures derived from white-matter fiber tracking revealed that the development of large-scale brain networks is characterized by weakening of short-range functional connectivity and strengthening of long-range functional connectivity. Importantly, our findings show that the dynamic process of over-connectivity followed by pruning, which rewires connectivity at the neuronal level, also operates at the systems level, helping to reconfigure and rebalance subcortical and paralimbic connectivity in the developing brain. Our study demonstrates the usefulness of network analysis of brain connectivity to elucidate key principles underlying functional brain maturation, paving the way for novel studies of disrupted brain connectivity in neurodevelopmental disorders such as autism. PMID:19621066
A candidate multimodal functional genetic network for thermal adaptation
Directory of Open Access Journals (Sweden)
Katharina C. Wollenberg Valero
2014-09-01
Full Text Available Vertebrate ectotherms such as reptiles provide ideal organisms for the study of adaptation to environmental thermal change. Comparative genomic and exomic studies can recover markers that diverge between warm and cold adapted lineages, but the genes that are functionally related to thermal adaptation may be difficult to identify. We here used a bioinformatics genome-mining approach to predict and identify functions for suitable candidate markers for thermal adaptation in the chicken. We first established a framework of candidate functions for such markers, and then compiled the literature on genes known to adapt to the thermal environment in different lineages of vertebrates. We then identified them in the genomes of human, chicken, and the lizard Anolis carolinensis, and established a functional genetic interaction network in the chicken. Surprisingly, markers initially identified from diverse lineages of vertebrates such as human and fish were all in close functional relationship with each other and more associated than expected by chance. This indicates that the general genetic functional network for thermoregulation and/or thermal adaptation to the environment might be regulated via similar evolutionarily conserved pathways in different vertebrate lineages. We were able to identify seven functions that were statistically overrepresented in this network, corresponding to four of our originally predicted functions plus three unpredicted functions. We describe this network as multimodal: central regulator genes with the function of relaying thermal signal (1, affect genes with different cellular functions, namely (2 lipoprotein metabolism, (3 membrane channels, (4 stress response, (5 response to oxidative stress, (6 muscle contraction and relaxation, and (7 vasodilation, vasoconstriction and regulation of blood pressure. This network constitutes a novel resource for the study of thermal adaptation in the closely related nonavian reptiles and
Role of topology in complex functional networks of beta cells.
Cherubini, Christian; Filippi, Simonetta; Gizzi, Alessio; Loppini, Alessandro
2015-10-01
The activity of pancreatic β cells can be described by biological networks of coupled nonlinear oscillators that, via electrochemical synchronization, release insulin in response to augmented glucose levels. In this work, we analyze the emergent behavior of regular and percolated β-cells clusters through a stochastic mathematical model where "functional" networks arise. We show that the emergence and robustness of the synchronized dynamics depend both on intrinsic and extrinsic parameters. In particular, cellular noise level, glucose concentration, network spatial architecture, and cell-to-cell coupling strength are the key factors for the generation of a rhythmic and robust activity. Their role in the functional network topology associated with β-cells clusters is analyzed and discussed. PMID:26565267
The Edinburgh human metabolic network reconstruction and its functional analysis
Ma, Hongwu; Sorokin, Anatoly; Mazein, Alexander; Selkov, Alex; Selkov, Evgeni; Demin, Oleg; Goryanin, Igor
2007-01-01
A better understanding of human metabolism and its relationship with diseases is an important task in human systems biology studies. In this paper, we present a high-quality human metabolic network manually reconstructed by integrating genome annotation information from different databases and metabolic reaction information from literature. The network contains nearly 3000 metabolic reactions, which were reorganized into about 70 human-specific metabolic pathways according to their functional...
Functional Extinctions of Species in Ecological Networks
Säterberg, Torbjörn
2016-01-01
Current rates of extinctions are estimated to be around 1000 times higher than background rates that would occur without anthropogenic impacts. These extinction rates refer to the traditional view of extinctions, i.e. numerical extinctions. This thesis is about another type of extinctions: functional extinctions. Those occur when the abundance of a species is too small to uphold the species’ ecologically interactive role. I have taken a theoretical approach and used dynamical models to invest...
Functional brain networks develop from a "local to distributed" organization.
Directory of Open Access Journals (Sweden)
Damien A Fair
2009-05-01
Full Text Available The mature human brain is organized into a collection of specialized functional networks that flexibly interact to support various cognitive functions. Studies of development often attempt to identify the organizing principles that guide the maturation of these functional networks. In this report, we combine resting state functional connectivity MRI (rs-fcMRI, graph analysis, community detection, and spring-embedding visualization techniques to analyze four separate networks defined in earlier studies. As we have previously reported, we find, across development, a trend toward 'segregation' (a general decrease in correlation strength between regions close in anatomical space and 'integration' (an increased correlation strength between selected regions distant in space. The generalization of these earlier trends across multiple networks suggests that this is a general developmental principle for changes in functional connectivity that would extend to large-scale graph theoretic analyses of large-scale brain networks. Communities in children are predominantly arranged by anatomical proximity, while communities in adults predominantly reflect functional relationships, as defined from adult fMRI studies. In sum, over development, the organization of multiple functional networks shifts from a local anatomical emphasis in children to a more "distributed" architecture in young adults. We argue that this "local to distributed" developmental characterization has important implications for understanding the development of neural systems underlying cognition. Further, graph metrics (e.g., clustering coefficients and average path lengths are similar in child and adult graphs, with both showing "small-world"-like properties, while community detection by modularity optimization reveals stable communities within the graphs that are clearly different between young children and young adults. These observations suggest that early school age children and adults
The brain's default network: anatomy, function, and relevance to disease.
Buckner, Randy L; Andrews-Hanna, Jessica R; Schacter, Daniel L
2008-03-01
Thirty years of brain imaging research has converged to define the brain's default network-a novel and only recently appreciated brain system that participates in internal modes of cognition. Here we synthesize past observations to provide strong evidence that the default network is a specific, anatomically defined brain system preferentially active when individuals are not focused on the external environment. Analysis of connectional anatomy in the monkey supports the presence of an interconnected brain system. Providing insight into function, the default network is active when individuals are engaged in internally focused tasks including autobiographical memory retrieval, envisioning the future, and conceiving the perspectives of others. Probing the functional anatomy of the network in detail reveals that it is best understood as multiple interacting subsystems. The medial temporal lobe subsystem provides information from prior experiences in the form of memories and associations that are the building blocks of mental simulation. The medial prefrontal subsystem facilitates the flexible use of this information during the construction of self-relevant mental simulations. These two subsystems converge on important nodes of integration including the posterior cingulate cortex. The implications of these functional and anatomical observations are discussed in relation to possible adaptive roles of the default network for using past experiences to plan for the future, navigate social interactions, and maximize the utility of moments when we are not otherwise engaged by the external world. We conclude by discussing the relevance of the default network for understanding mental disorders including autism, schizophrenia, and Alzheimer's disease. PMID:18400922
Functional deficits of the attentional networks in autism
Fan, Jin; Bernardi, Silvia; Van Dam, Nicholas T.; Anagnostou, Evdokia; Gu, Xiaosi; Martin, Laura; Park, Yunsoo; Liu, Xun; Kolevzon, Alexander; Soorya, Latha; Grodberg, David; Hollander, Eric; Hof, Patrick R.
2012-01-01
Attentional dysfunction is among the most consistent observations of autism spectrum disorders (ASD). However, the neural nature of this deficit in ASD is still unclear. In this study, we aimed to identify the neurobehavioral correlates of attentional dysfunction in ASD. We used the Attention Network Test-Revised and functional magnetic resonance imaging to examine alerting, orienting, and executive control functions, as well as the neural substrates underlying these attentional functions in ...
Wang, Zhiheng
2014-12-10
A meshless local radial basis function method is developed for two-dimensional incompressible Navier-Stokes equations. The distributed nodes used to store the variables are obtained by the philosophy of an unstructured mesh, which results in two main advantages of the method. One is that the unstructured nodes generation in the computational domain is quite simple, without much concern about the mesh quality; the other is that the localization of the obtained collocations for the discretization of equations is performed conveniently with the supporting nodes. The algebraic system is solved by a semi-implicit pseudo-time method, in which the convective and source terms are explicitly marched by the Runge-Kutta method, and the diffusive terms are implicitly solved. The proposed method is validated by several benchmark problems, including natural convection in a square cavity, the lid-driven cavity flow, and the natural convection in a square cavity containing a circular cylinder, and very good agreement with the existing results are obtained.
Enhancing finite differences with radial basis functions: Experiments on the Navier-Stokes equations
Flyer, Natasha; Barnett, Gregory A.; Wicker, Louis J.
2016-07-01
Polynomials are used together with polyharmonic spline (PHS) radial basis functions (RBFs) to create local RBF-finite-difference (RBF-FD) weights on different node layouts for spatial discretizations that can be viewed as enhancements of the classical finite differences (FD). The presented method replicates the convergence properties of FD but for arbitrary node layouts. It is tested on the 2D compressible Navier-Stokes equations at low Mach number, relevant to atmospheric flows. Test cases are taken from the numerical weather prediction community and solved on bounded domains. Thus, attention is given on how to handle boundaries with the RBF-FD method, as well as a novel implementation for hyperviscosity. Comparisons are done on Cartesian, hexagonal, and quasi-uniform node layouts. Consideration and guidelines are given on PHS order, polynomial degree and stencil size. The main advantages of the present method are: 1) capturing the basic physics of the problem surprisingly well, even at very coarse resolutions, 2) high-order accuracy without the need of tuning a shape parameter, and 3) the inclusion of polynomials eliminates stagnation (saturation) errors. A MATLAB code is given to calculate the differentiation weights for this novel approach.
McClements, David Julian; Gumus, Cansu Ekin
2016-08-01
There is increasing consumer pressure for commercial products that are more natural, sustainable, and environmentally friendly, including foods, cosmetics, detergents, and personal care products. Industry has responded by trying to identify natural alternatives to synthetic functional ingredients within these products. The focus of this review article is on the replacement of synthetic surfactants with natural emulsifiers, such as amphiphilic proteins, polysaccharides, biosurfactants, phospholipids, and bioparticles. In particular, the physicochemical basis of emulsion formation and stabilization by natural emulsifiers is discussed, and the benefits and limitations of different natural emulsifiers are compared. Surface-active polysaccharides typically have to be used at relatively high levels to produce small droplets, but the droplets formed are highly resistant to environmental changes. Conversely, surface-active proteins are typically utilized at low levels, but the droplets formed are highly sensitive to changes in pH, ionic strength, and temperature. Certain phospholipids are capable of producing small oil droplets during homogenization, but again the droplets formed are highly sensitive to changes in environmental conditions. Biosurfactants (saponins) can be utilized at low levels to form fine oil droplets that remain stable over a range of environmental conditions. Some nature-derived nanoparticles (e.g., cellulose, chitosan, and starch) are effective at stabilizing emulsions containing relatively large oil droplets. Future research is encouraged to identify, isolate, purify, and characterize new types of natural emulsifier, and to test their efficacy in food, cosmetic, detergent, personal care, and other products. PMID:27181392
Radial Basis Function-Sparse Partial Least Squares for Application to Brain Imaging Data
Directory of Open Access Journals (Sweden)
Hisako Yoshida
2013-01-01
Full Text Available Magnetic resonance imaging (MRI data is an invaluable tool in brain morphology research. Here, we propose a novel statistical method for investigating the relationship between clinical characteristics and brain morphology based on three-dimensional MRI data via radial basis function-sparse partial least squares (RBF-sPLS. Our data consisted of MRI image intensities for multimillion voxels in a 3D array along with 73 clinical variables. This dataset represents a suitable application of RBF-sPLS because of a potential correlation among voxels as well as among clinical characteristics. Additionally, this method can simultaneously select both effective brain regions and clinical characteristics based on sparse modeling. This is in contrast to existing methods, which consider prespecified brain regions because of the computational difficulties involved in processing high-dimensional data. RBF-sPLS employs dimensionality reduction in order to overcome this obstacle. We have applied RBF-sPLS to a real dataset composed of 102 chronic kidney disease patients, while a comparison study used a simulated dataset. RBF-sPLS identified two brain regions of interest from our patient data: the temporal lobe and the occipital lobe, which are associated with aging and anemia, respectively. Our simulation study suggested that such brain regions are extracted with excellent accuracy using our method.
An, Yu; Liu, Jie; Zhang, Guanglei; Ye, Jinzuo; Mao, Yamin; Jiang, Shixin; Shang, Wenting; Du, Yang; Chi, Chongwei; Tian, Jie
2015-10-01
Fluorescence molecular tomography (FMT) is a promising tool in the study of cancer, drug discovery, and disease diagnosis, enabling noninvasive and quantitative imaging of the biodistribution of fluorophores in deep tissues via image reconstruction techniques. Conventional reconstruction methods based on the finite-element method (FEM) have achieved acceptable stability and efficiency. However, some inherent shortcomings in FEM meshes, such as time consumption in mesh generation and a large discretization error, limit further biomedical application. In this paper, we propose a meshless method for reconstruction of FMT (MM-FMT) using compactly supported radial basis functions (CSRBFs). With CSRBFs, the image domain can be accurately expressed by continuous CSRBFs, avoiding the discretization error to a certain degree. After direct collocation with CSRBFs, the conventional optimization techniques, including Tikhonov, L1-norm iteration shrinkage (L1-IS), and sparsity adaptive matching pursuit, were adopted to solve the meshless reconstruction. To evaluate the performance of the proposed MM-FMT, we performed numerical heterogeneous mouse experiments and in vivo bead-implanted mouse experiments. The results suggest that the proposed MM-FMT method can reduce the position error of the reconstruction result to smaller than 0.4 mm for the double-source case, which is a significant improvement for FMT.
Unification of Plasma Fluid and Kinetic Theory via Gaussian Radial Basis Functions
Candy, J. M.
2015-11-01
A fundamental macroscopic description of a magnetized plasma is the Vlasov equation supplemented by the nonlinear inverse-square force Fokker-Planck collision operator [Rosenbluth et al., Phys. Rev. 107, 1957]. The Vlasov part describes advection in a six-dimensional phase space whereas the collision operator contains friction and diffusion coefficients that are weighted velocity-space integrals of the particle distribution function. The Fokker-Planck collision operator is an integro-differential, nonlinear (bilinear) operator. Numerical discretization of the operator, in particular for collisions of unlike species, is extremely challenging. In this work, we describe a new approach to discretize the entire kinetic system based on an expansion in Gaussian Radial Basis functions (RBFs). This approach is particularly well-suited to treat the collision operator because the friction and diffusion coefficients can be analytically calculated. Although the RBF method is known to be a powerful scheme for the interpolation of scattered multidimensional data, Gaussian RBFs also have a deep physical interpretation in statistical mechanics and plasma physics as local thermodynamic equilibria. We outline the general theory, highlight the connection to plasma fluid theories, and also give 2D and 3D numerical solutions of the nonlinear Fokker-Planck equation. A broad spectrum of applications for the new method is anticipated in both astrophysical and laboratory plasmas. In particular, we believe that the RBF method may provide a new bridge between fluid and kinetic descriptions of magnetized plasma. Work supported in part by US DOE under DE-FG02-08ER54963.
The Immune-Metabolic Basis of Effector Memory CD4+ T Cell Function under Hypoxic Conditions.
Dimeloe, Sarah; Mehling, Matthias; Frick, Corina; Loeliger, Jordan; Bantug, Glenn R; Sauder, Ursula; Fischer, Marco; Belle, Réka; Develioglu, Leyla; Tay, Savaş; Langenkamp, Anja; Hess, Christoph
2016-01-01
Effector memory (EM) CD4(+) T cells recirculate between normoxic blood and hypoxic tissues to screen for cognate Ag. How mitochondria of these cells, shuttling between normoxia and hypoxia, maintain bioenergetic efficiency and stably uphold antiapoptotic features is unknown. In this study, we found that human EM CD4(+) T cells had greater spare respiratory capacity (SRC) than did naive counterparts, which was immediately accessed under hypoxia. Consequently, hypoxic EM cells maintained ATP levels, survived and migrated better than did hypoxic naive cells, and hypoxia did not impair their capacity to produce IFN-γ. EM CD4(+) T cells also had more abundant cytosolic GAPDH and increased glycolytic reserve. In contrast to SRC, glycolytic reserve was not tapped under hypoxic conditions, and, under hypoxia, glucose metabolism contributed similarly to ATP production in naive and EM cells. However, both under normoxic and hypoxic conditions, glucose was critical for EM CD4(+) T cell survival. Mechanistically, in the absence of glycolysis, mitochondrial membrane potential (ΔΨm) of EM cells declined and intrinsic apoptosis was triggered. Restoring pyruvate levels, the end product of glycolysis, preserved ΔΨm and prevented apoptosis. Furthermore, reconstitution of reactive oxygen species (ROS), whose production depends on ΔΨm, also rescued viability, whereas scavenging mitochondrial ROS exacerbated apoptosis. Rapid access of SRC in hypoxia, linked with built-in, oxygen-resistant glycolytic reserve that functionally insulates ΔΨm and mitochondrial ROS production from oxygen tension changes, provides an immune-metabolic basis supporting survival, migration, and function of EM CD4(+) T cells in normoxic and hypoxic conditions. PMID:26621861
Parlett, Christopher M. A.; Isaacs, Mark A.; Beaumont, Simon K.; Bingham, Laura M.; Hondow, Nicole S.; Wilson, Karen; Lee, Adam F.
2016-02-01
The chemical functionality within porous architectures dictates their performance as heterogeneous catalysts; however, synthetic routes to control the spatial distribution of individual functions within porous solids are limited. Here we report the fabrication of spatially orthogonal bifunctional porous catalysts, through the stepwise template removal and chemical functionalization of an interconnected silica framework. Selective removal of polystyrene nanosphere templates from a lyotropic liquid crystal-templated silica sol-gel matrix, followed by extraction of the liquid crystal template, affords a hierarchical macroporous-mesoporous architecture. Decoupling of the individual template extractions allows independent functionalization of macropore and mesopore networks on the basis of chemical and/or size specificity. Spatial compartmentalization of, and directed molecular transport between, chemical functionalities affords control over the reaction sequence in catalytic cascades; herein illustrated by the Pd/Pt-catalysed oxidation of cinnamyl alcohol to cinnamic acid. We anticipate that our methodology will prompt further design of multifunctional materials comprising spatially compartmentalized functions.
Personal networking function of the Internet
Petrović Dalibor
2009-01-01
The aim of the paper is to understand the role of Internet in creating new forms of sociability in the modern society. In the first part the history of social studies of Internet is reviewed, and the conclusion put forward that the anti-social role of the Internet cannot be proved. In the theoretical part of the paper the author presents his idea of two basic roles of Internet as interpersonal interaction tool: transmissional and procreative. These two Internet functions are very important me...
Turovtsev, V. V.; Orlov, Yu. D.; Tsirulev, A. N.
2015-08-01
The advantages of the orthonormal basis set of 2π-periodic Mathieu functions compared to the trigonometric basis set in calculations of torsional states of molecules are substantiated. Explicit expressions are derived for calculating the Hamiltonian matrix elements of a one-dimensional torsional Schrödinger equation with a periodic potential of the general form in the basis set of Mathieu functions. It is shown that variation of a parameter of Mathieu functions allows the rotation potential and the structural function to be approximated with a good accuracy by a small number of series terms. The conditions for the best choice of this parameter are specified, and approximations are obtained for torsional potentials of n-butane upon rotation about the central C-C bond and of its univalent radical n-butyl C2H5C·H2 upon rotation of the C·H2 group. All algorithms are implemented in the Maple package.
Multimodal functional network connectivity: an EEG-fMRI fusion in network space.
Directory of Open Access Journals (Sweden)
Xu Lei
Full Text Available EEG and fMRI recordings measure the functional activity of multiple coherent networks distributed in the cerebral cortex. Identifying network interaction from the complementary neuroelectric and hemodynamic signals may help to explain the complex relationships between different brain regions. In this paper, multimodal functional network connectivity (mFNC is proposed for the fusion of EEG and fMRI in network space. First, functional networks (FNs are extracted using spatial independent component analysis (ICA in each modality separately. Then the interactions among FNs in each modality are explored by Granger causality analysis (GCA. Finally, fMRI FNs are matched to EEG FNs in the spatial domain using network-based source imaging (NESOI. Investigations of both synthetic and real data demonstrate that mFNC has the potential to reveal the underlying neural networks of each modality separately and in their combination. With mFNC, comprehensive relationships among FNs might be unveiled for the deep exploration of neural activities and metabolic responses in a specific task or neurological state.
Optimal Computation of Symmetric Boolean Functions in Collocated Networks
Kowshik, Hemant
2011-01-01
We consider collocated wireless sensor networks, where each node has a Boolean measurement and the goal is to compute a given Boolean function of these measurements. We first consider the worst case setting and study optimal block computation strategies for computing symmetric Boolean functions. We study three classes of functions: threshold functions, delta functions and interval functions. We provide exactly optimal strategies for the first two classes, and a scaling law order-optimal strategy with optimal preconstant for interval functions. We also extend the results to the case of integer measurements and certain integer-valued functions. We use lower bounds from communication complexity theory, and provide an achievable scheme using information theoretic tools. Next, we consider the case where nodes measurements are random and drawn from independent Bernoulli distributions. We address the problem of optimal function computation so as to minimize the expected total number of bits that are transmitted. In ...
Characteristic functions and process identification by neural networks
Dente, J A
1997-01-01
Principal component analysis (PCA) algorithms use neural networks to extract the eigenvectors of the correlation matrix from the data. However, if the process is non-Gaussian, PCA algorithms or their higher order generalisations provide only incomplete or misleading information on the statistical properties of the data. To handle such situations we propose neural network algorithms, with an hybrid (supervised and unsupervised) learning scheme, which constructs the characteristic function of the probability distribution and the transition functions of the stochastic process. Illustrative examples are presented, which include Cauchy and Levy-type processes
Emergence of Functional Specificity in Balanced Networks with Synaptic Plasticity.
Directory of Open Access Journals (Sweden)
Sadra Sadeh
2015-06-01
Full Text Available In rodent visual cortex, synaptic connections between orientation-selective neurons are unspecific at the time of eye opening, and become to some degree functionally specific only later during development. An explanation for this two-stage process was proposed in terms of Hebbian plasticity based on visual experience that would eventually enhance connections between neurons with similar response features. For this to work, however, two conditions must be satisfied: First, orientation selective neuronal responses must exist before specific recurrent synaptic connections can be established. Second, Hebbian learning must be compatible with the recurrent network dynamics contributing to orientation selectivity, and the resulting specific connectivity must remain stable for unspecific background activity. Previous studies have mainly focused on very simple models, where the receptive fields of neurons were essentially determined by feedforward mechanisms, and where the recurrent network was small, lacking the complex recurrent dynamics of large-scale networks of excitatory and inhibitory neurons. Here we studied the emergence of functionally specific connectivity in large-scale recurrent networks with synaptic plasticity. Our results show that balanced random networks, which already exhibit highly selective responses at eye opening, can develop feature-specific connectivity if appropriate rules of synaptic plasticity are invoked within and between excitatory and inhibitory populations. If these conditions are met, the initial orientation selectivity guides the process of Hebbian learning and, as a result, functionally specific and a surplus of bidirectional connections emerge. Our results thus demonstrate the cooperation of synaptic plasticity and recurrent dynamics in large-scale functional networks with realistic receptive fields, highlight the role of inhibition as a critical element in this process, and paves the road for further computational
A Pair Correlation Function Characterizing the Anisotropy of Force Networks
Institute of Scientific and Technical Information of China (English)
SUN Qi-Cheng; JI Shun-Ying
2011-01-01
Force networks may underlie the constitutive relations among granular solids and granular flows and inter-state transitions. However, it is difficult to effectively describe the anisotropy of force networks. We propose a new pair correlation Function g(r, 0) to describe the characteristic lengths and orientations of force chains that are composed of particles with contact forces greater than the threshold values. A formulation g(r,0) ? A(r)+b(r) cos 2(0 -n/2) is used to fit the g(r, 0) data. The characteristic lengths and orientations of force networks are then elucidated.%@@ Force networks may underlie the constitutive relations among granular solids and granular flows and inter-state transitions.However, it is difficult to effectively describe the anisotropy of force networks.We propose a new pair correlation function g(r,θ) to describe the characteristic lengths and orientations of force chains that are composed of particles with contact forces greater than the threshold values.A formulation g(r,θ)≈a(r) + b( r ) cos 2(θ-π/2) is used to fit the g(r,θ) data.The characteristic lengths and orientations of force networks are then elucidated.
Statistical characterization of an ensemble of functional neural networks
Silva, B. B. M.; Miranda, J. G. V.; Corso, G.; Copelli, M.; Vasconcelos, N.; Ribeiro, S.; Andrade, R. F. S.
2012-10-01
This work uses a complex network approach to analyze temporal sequences of electrophysiological signals of brain activity from freely behaving rats. A network node represents a neuron and a network link is included between a pair of nodes whenever their firing rates are correlated. The framework of time varying graph (TVG) is used to deal with a very large number (>30 000) of time dependent networks, which are set up by taking into account correlations between neuron firing rates in a moving time lag window of suitable width. Statistical distributions for the following network measures are obtained: size of the largest connected cluster, number of edges, average node degree, and average minimal path. We find that the number of networks with highly correlated activity in distinct brain areas has a fat-tailed distribution, irrespective of the behavioral state of the animal. This contrasts with short-tailed distributions for surrogates obtained by shuffling the original data, and reflects the fact that neurons in the neocortex and hippocampus often act in precise temporal coordination. Our results also suggest that functional neuronal networks at the millimeter scale undergo statistically nontrivial rearrangements over time, thus delimitating an empirical constraint for models of brain activity.
Fabric Quality Optimization by Using Desirability Function and Neural Networks
Directory of Open Access Journals (Sweden)
Hajer Souid
2012-01-01
Full Text Available The present paper presents a new method to estimate objective reflection of Denim fabric quality by using desirability function and neural networks. The global fabric quality was defined through one index belonging to the closed interval [0, 1]. For this reason, we have created a first algorithm that is modified when the definition of fabric quality is changed. This prediction would allow fabric producer to estimate customer’s quality satisfaction level. The present approach has conferred a good evaluation and prediction of the all-encompassing denim fabric quality. In the second stage of the study, we developed a model to predict global fabric quality from fiber, yarn, weaving parameters and finishing characteristics by using neural networks. The neural network model is accomplished by using a second algorithm based on back-propagation concept. The results have shown that the neuronal networks could predict global fabric quality of the untrained fabrics with better precision
Spectra: Robust Estimation of Distribution Functions in Networks
Borges, Miguel; Baquero, Carlos; Almeida, Paulo Sérgio
2012-01-01
Distributed aggregation allows the derivation of a given global aggregate property from many individual local values in nodes of an interconnected network system. Simple aggregates such as minima/maxima, counts, sums and averages have been thoroughly studied in the past and are important tools for distributed algorithms and network coordination. Nonetheless, this kind of aggregates may not be comprehensive enough to characterize biased data distributions or when in presence of outliers, making the case for richer estimates of the values on the network. This work presents Spectra, a distributed algorithm for the estimation of distribution functions over large scale networks. The estimate is available at all nodes and the technique depicts important properties, namely: robust when exposed to high levels of message loss, fast convergence speed and fine precision in the estimate. It can also dynamically cope with changes of the sampled local property, not requiring algorithm restarts, and is highly resilient to n...
Directory of Open Access Journals (Sweden)
Gisele Tessari Santos
2009-08-01
Full Text Available A large number of financial engineering problems involve non-linear equations with non-linear or time-dependent boundary conditions. Despite available analytical solutions, many classical and modified forms of the well-known Black-Scholes (BS equation require fast and accurate numerical solutions. This work introduces the radial basis function (RBF method as applied to the solution of the BS equation with non-linear boundary conditions, related to path-dependent barrier options. Furthermore, the diffusional method for solving advective-diffusive equations is explored as to its effectiveness to solve BS equations. Cubic and Thin-Plate Spline (TPS radial basis functions were employed and evaluated as to their effectiveness to solve barrier option problems. The numerical results, when compared against analytical solutions, allow affirming that the RBF method is very accurate and easy to be implemented. When the RBF method is applied, the diffusional method leads to the same results as those obtained from the classical formulation of Black-Scholes equation.Muitos problemas de engenharia financeira envolvem equações não-lineares com condições de contorno não-lineares ou dependentes do tempo. Apesar de soluções analíticas disponíveis, várias formas clássicas e modificadas da conhecida equação de Black-Scholes (BS requerem soluções numéricas rápidas e acuradas. Este trabalho introduz o método de função de base radial (RBF aplicado à solução da equação BS com condições de contorno não-lineares relacionadas a opções de barreira dependentes da trajetória. Além disso, explora-se o método difusional para solucionar equações advectivo-difusivas quanto à sua efetividade para solucionar equações BS. Utilizam-se funções de base radial Cúbica e Thin-Plate Spline (TPS, aplicadas à solução de problemas de opções de barreiras. Os resultados numéricos, quando comparados com as soluções analíticas, permitem afirmar
Functional Reorganizations of Brain Network in Prelingually Deaf Adolescents
Li, Wenjing; Li, Jianhong; Wang, Jieqiong; Zhou, Peng; Wang, Zhenchang; Xian, Junfang; He, Huiguang
2016-01-01
Previous neuroimaging studies suggested structural or functional brain reorganizations occurred in prelingually deaf subjects. However, little is known about the reorganizations of brain network architectures in prelingually deaf adolescents. The present study aims to investigate alterations of whole-brain functional network using resting-state fMRI and graph theory analysis. We recruited 16 prelingually deaf adolescents (10~18 years) and 16 normal controls matched in age and gender. Brain networks were constructed from mean time courses of 90 regions. Widely distributed network was observed in deaf subjects, with increased connectivity between the limbic system and regions involved in visual and language processing, suggesting reinforcement of the processing for the visual and verbal information in deaf adolescents. Decreased connectivity was detected between the visual regions and language regions possibly due to inferior reading or speaking skills in deaf subjects. Using graph theory analysis, we demonstrated small-worldness property did not change in prelingually deaf adolescents relative to normal controls. However, compared with healthy adolescents, eight regions involved in visual, language, and auditory processing were identified as hubs only present in prelingually deaf adolescents. These findings revealed reorganization of brain functional networks occurred in prelingually deaf adolescents to adapt to deficient auditory input. PMID:26819781
Functional Reorganizations of Brain Network in Prelingually Deaf Adolescents.
Li, Wenjing; Li, Jianhong; Wang, Jieqiong; Zhou, Peng; Wang, Zhenchang; Xian, Junfang; He, Huiguang
2016-01-01
Previous neuroimaging studies suggested structural or functional brain reorganizations occurred in prelingually deaf subjects. However, little is known about the reorganizations of brain network architectures in prelingually deaf adolescents. The present study aims to investigate alterations of whole-brain functional network using resting-state fMRI and graph theory analysis. We recruited 16 prelingually deaf adolescents (10~18 years) and 16 normal controls matched in age and gender. Brain networks were constructed from mean time courses of 90 regions. Widely distributed network was observed in deaf subjects, with increased connectivity between the limbic system and regions involved in visual and language processing, suggesting reinforcement of the processing for the visual and verbal information in deaf adolescents. Decreased connectivity was detected between the visual regions and language regions possibly due to inferior reading or speaking skills in deaf subjects. Using graph theory analysis, we demonstrated small-worldness property did not change in prelingually deaf adolescents relative to normal controls. However, compared with healthy adolescents, eight regions involved in visual, language, and auditory processing were identified as hubs only present in prelingually deaf adolescents. These findings revealed reorganization of brain functional networks occurred in prelingually deaf adolescents to adapt to deficient auditory input. PMID:26819781
Graphical Features of Functional Genes in Human Protein Interaction Network.
Wang, Pei; Chen, Yao; Lu, Jinhu; Wang, Qingyun; Yu, Xinghuo
2016-06-01
With the completion of the human genome project, it is feasible to investigate large-scale human protein interaction network (HPIN) with complex networks theory. Proteins are encoded by genes. Essential, viable, disease, conserved, housekeeping (HK) and tissue-enriched (TE) genes are functional genes, which are organized and functioned via interaction networks. Based on up-to-date data from various databases or literature, two large-scale HPINs and six subnetworks are constructed. We illustrate that the HPINs and most of the subnetworks are sparse, small-world, scale-free, disassortative and with hierarchical modularity. Among the six subnetworks, essential, disease and HK subnetworks are more densely connected than the others. Statistical analysis on the topological structures of the HPIN reveals that the lethal, the conserved, the HK and the TE genes are with hallmark graphical features. Receiver operating characteristic (ROC) curves indicate that the essential genes can be distinguished from the viable ones with accuracy as high as almost 70%. Closeness, semi-local and eigenvector centralities can distinguish the HK genes from the TE ones with accuracy around 82%. Furthermore, the Venn diagram, cluster dendgrams and classifications of disease genes reveal that some classes of disease genes are with hallmark graphical features, especially for cancer genes, HK disease genes and TE disease genes. The findings facilitate the identification of some functional genes via topological structures. The investigations shed some light on the characteristics of the compete interactome, which have potential implications in networked medicine and biological network control. PMID:26841412
International Nuclear Information System (INIS)
Unstructured three-dimensional fluid velocity data were interpolated using Gaussian radial basis function (RBF) interpolation. Data were generated to imitate the spatial resolution and experimental uncertainty of a typical implementation of defocusing digital particle image velocimetry. The velocity field associated with a steadily rotating infinite plate was simulated to provide a bounded, fully three-dimensional analytical solution of the Navier–Stokes equations, allowing for robust analysis of the interpolation accuracy. The spatial resolution of the data (i.e. particle density) and the number of RBFs were varied in order to assess the requirements for accurate interpolation. Interpolation constraints, including boundary conditions and continuity, were included in the error metric used for the least-squares minimization that determines the interpolation parameters to explore methods for improving RBF interpolation results. Even spacing and logarithmic spacing of RBF locations were also investigated. Interpolation accuracy was assessed using the velocity field, divergence of the velocity field, and viscous torque on the rotating boundary. The results suggest that for the present implementation, RBF spacing of 0.28 times the boundary layer thickness is sufficient for accurate interpolation, though theoretical error analysis suggests that improved RBF positioning may yield more accurate results. All RBF interpolation results were compared to standard Gaussian weighting and Taylor expansion interpolation methods. Results showed that RBF interpolation improves interpolation results compared to the Taylor expansion method by 60% to 90% based on the average squared velocity error and provides comparable velocity results to Gaussian weighted interpolation in terms of velocity error. RMS accuracy of the flow field divergence was one to two orders of magnitude better for the RBF interpolation compared to the other two methods. RBF interpolation that was applied to
Reactor Network Synthesis Based on Instantaneous Objective Function Characteristic Curves
Institute of Scientific and Technical Information of China (English)
张治山; 赵文; 王艳丽; 周传光; 袁希钢
2003-01-01
It is believed that whether the instantaneous objective function curves of plug-flow-reactor (PFR) and continuous-stirred-tank-reactor (CSTR) overlap or not, they have a consistent changing trend for complex reactions(steady state, isothermal and constant volume). As a result of the relation of the objective functions (selectivity or yield) to the instantaneous objective functions (instantaneous selectivity or instantaneous reaction rate), the optimal reactor network configuration can be determined according to the changing trend of the instantaneous objective function curves. Further, a recent partition strategy for the reactor network synthesis based on the instantaneous objective function characteristic curves is proposed by extending the attainable region partition strategy from the concentration space to the instantaneous objective function-unreacted fraction of key reactant space. In this paper,the instantaneous objective function is closed to be the instantaneous selectivity and several samples axe examined to illustrate the proposed method. The comparison with the previous work indicates it is a very convenient and practical systematic tool of the reactor network synthesis and seems also promising for overcoming the dimension limit of the attainable region partition strategy in the concentration space.
Schalow, G
2010-01-01
Coordination Dynamics Therapy (CDT) has been shown to be able to partly repair CNS injury. The repair is based on a movement-based re-learning theory which requires at least three levels of description: the movement or pattern (and anamnesis) level, the collective variable level, and the neuron level. Upon CDT not only the actually performed movement pattern itself is repaired, but the entire dynamics of CNS organization is improved, which is the theoretical basis for (re-) learning transfer. The transfer of learning for repair from jumping on springboard and exercising on a special CDT and recording device to urinary bladder functions is investigated at the neuron level. At the movement or pattern level, the improvement of central nervous system (CNS) functioning in human patients can be seen (or partly measured) by the improvement of the performance of the pattern. At the collective variable level, coordination tendencies can be measured by the so-called 'coordination dynamics' before, during and after treatment. At the neuron level, re-learning can additionally be assessed by surface electromyography (sEMG) as alterations of single motor unit firings and motor programs. But to express the ongoing interaction between the numerous neural, muscular, and metabolic elements involved in perception and action, it is relevant to inquire how the individual afferent and efferent neurons adjust their phase and frequency coordination to other neurons to satisfy learning task requirements. With the single-nerve fibre action potential recording method it was possible to measure that distributed single neurons communicate by phase and frequency coordination. It is shown that this timed firing of neurons is getting impaired upon injury and has to be improved by learning The stability of phase and frequency coordination among afferent and efferent neuron firings can be related to pattern stability. The stability of phase and frequency coordination at the neuron level can
Frady, E Paxon; Kapoor, Ashish; Horvitz, Eric; Kristan, William B
2016-08-01
Large-scale data collection efforts to map the brain are underway at multiple spatial and temporal scales, but all face fundamental problems posed by high-dimensional data and intersubject variability. Even seemingly simple problems, such as identifying a neuron/brain region across animals/subjects, become exponentially more difficult in high dimensions, such as recognizing dozens of neurons/brain regions simultaneously. We present a framework and tools for functional neurocartography-the large-scale mapping of neural activity during behavioral states. Using a voltage-sensitive dye (VSD), we imaged the multifunctional responses of hundreds of leech neurons during several behaviors to identify and functionally map homologous neurons. We extracted simple features from each of these behaviors and combined them with anatomical features to create a rich medium-dimensional feature space. This enabled us to use machine learning techniques and visualizations to characterize and account for intersubject variability, piece together a canonical atlas of neural activity, and identify two behavioral networks. We identified 39 neurons (18 pairs, 3 unpaired) as part of a canonical swim network and 17 neurons (8 pairs, 1 unpaired) involved in a partially overlapping preparatory network. All neurons in the preparatory network rapidly depolarized at the onsets of each behavior, suggesting that it is part of a dedicated rapid-response network. This network is likely mediated by the S cell, and we referenced VSD recordings to an activity atlas to identify multiple cells of interest simultaneously in real time for further experiments. We targeted and electrophysiologically verified several neurons in the swim network and further showed that the S cell is presynaptic to multiple neurons in the preparatory network. This study illustrates the basic framework to map neural activity in high dimensions with large-scale recordings and how to extract the rich information necessary to perform
Yaeger, M. A.; Ye, S.; Coopersmith, E. J.; Cheng, L.; Sivapalan, M.
2011-12-01
Catchment signatures quantify hydrologic responses to rainfall inputs; by distilling catchment behavior into a few signatures, classification of variable behavior across many different catchments can be made. One such signature, the regime curve (RC), shows the intra-annual variability of monthly or even daily average streamflows. Another, the flow duration curve (FDC), plots daily streamflow magnitude as a function of the probability of its exceedance. Encoded within these signatures are the combined impacts of climate, geology, topography, ecology, and even human activities. In this study we analyze regional variations of the RC and the FDC across the continental United States and interpret these using a simple bucket model in order to better understand the climatic and landscape controls. The four parameter functional model used treats a catchment as a nonlinear, two-stage filter. In the first stage, precipitation events are filtered nonlinearly into fast runoff and wetting (infiltration). In the second stage, the infiltrated water is again filtered, more linearly, governed by a competition between subsurface drainage and evapotranspiration. In this filtering process, the FDC associated with the precipitation itself cascades through the catchment system, transformed first into the FDC of fast runoff, and then into the FDC of slow runoff. The FDC of total runoff is therefore a convolution of the two components. Using this partitioning, both the RC and the FDC can be separated into two components, one for the fast runoff, and one for the slow, subsurface runoff. The analysis is repeated for 200 catchments from the MOPEX long-term dataset, spatially ranged across the entire continental United States. The variations in the FDCs are evaluated on the basis of the model parameters for each filter, enabling assessment of the relative contributions of climate (from the FDCs of precipitation and relative seasonality of precipitation and potential evaporation) and
Unconditioned responses and functional fear networks in human classical conditioning
Linnman, Clas; Rougemont-Bücking, Ansgar; Beucke, Jan Carl; Zeffiro, Thomas A.; Milad, Mohammed R.
2011-01-01
Human imaging studies examining fear conditioning have mainly focused on the neural responses to conditioned cues. In contrast, the neural basis of the unconditioned response and the mechanisms by which fear modulates inter-regional functional coupling have received limited attention. We examined the neural responses to an unconditioned stimulus using a partial-reinforcement fear conditioning paradigm and functional MRI. The analysis focused on: (1) the effects of an unconditioned stimulus (a...
Magnetic anisotropy of metal functionalized phthalocyanine 2D networks
Zhu, Guojun; Zhang, Yun; Xiao, Huaping; Cao, Juexian
2016-06-01
The magnetic anisotropy of metal including Cr, Mn, Fe, Co, Mo, Tc, Ru, Rh, W, Re, Os, Ir atoms functionalized phthalocyanine networks have been investigated with first-principles calculations. The magnetic moments can be expressed as 8-n μB with n the electronic number of outmost d shell in the transition metals. The huge magnetocrystalline anisotropy energy (MAE) is obtained by torque method. Especially, the MAE of Re functionalized phthalocyanine network is about 20 meV with an easy axis perpendicular to the plane of phthalocyanine network. The MAE is further manipulated by applying the external biaxial strain. It is found that the MAE is linear increasing with the external strain in the range of -2% to 2%. Our results indicate an effective approach to modulate the MAE for practical application.
Function estimation by feedforward sigmoidal networks with bounded weights
Energy Technology Data Exchange (ETDEWEB)
Rao, N.S.V.; Protopoescu, V. [Oak Ridge National Lab., TN (United States). Center for Engineering Systems Advanced Research; Qiao, H. [Fort Valley State Coll., GA (United States). Dept. of Mathematics and Physics
1996-05-01
The authors address the problem of PAC (probably and approximately correct) learning functions f : [0, 1]{sup d} {r_arrow} [{minus}K, K] based on iid (independently and identically distributed) sample generated according to an unknown distribution, by using feedforward sigmoidal networks. They use two basic properties of the neural networks with bounded weights, namely: (a) they form a Euclidean class, and (b) for hidden units of the form tanh ({gamma}z) they are Lipschitz functions. Either property yields sample sizes for PAC function learning under any Lipschitz cost function. The sample size based on the first property is tighter compared to the known bounds based on VC-dimension. The second estimate yields a sample size that can be conveniently adjusted by a single parameter, {gamma}, related to the hidden nodes.
Distinct hippocampal functional networks revealed by tractography-based parcellation.
Adnan, Areeba; Barnett, Alexander; Moayedi, Massieh; McCormick, Cornelia; Cohn, Melanie; McAndrews, Mary Pat
2016-07-01
Recent research suggests the anterior and posterior hippocampus form part of two distinct functional neural networks. Here we investigate the structural underpinnings of this functional connectivity difference using diffusion-weighted imaging-based parcellation. Using this technique, we substantiated that the hippocampus can be parcellated into distinct anterior and posterior segments. These structurally defined segments did indeed show different patterns of resting state functional connectivity, in that the anterior segment showed greater connectivity with temporal and orbitofrontal cortex, whereas the posterior segment was more highly connected to medial and lateral parietal cortex. Furthermore, we showed that the posterior hippocampal connectivity to memory processing regions, including the dorsolateral prefrontal cortex, parahippocampal, inferior temporal and fusiform gyri and the precuneus, predicted interindividual relational memory performance. These findings provide important support for the integration of structural and functional connectivity in understanding the brain networks underlying episodic memory. PMID:26206251
DEFF Research Database (Denmark)
Garrido, Pablo; Sørensen, Chres Wiant; Roetter, Daniel Enrique Lucani;
2016-01-01
Random Linear Network Coding (RLNC) has been shown to be a technique with several benefits, in particular when applied over wireless mesh networks, since it provides robustness against packet losses. On the other hand, Tunable Sparse Network Coding (TSNC) is a promising concept, which leverages a...... trade-off between computational complexity and goodput. An optimal density tuning function has not been found yet, due to the lack of a closed-form expression that links density, performance and computational cost. In addition, it would be difficult to implement, due to the feedback delay. In this work...
Functional clustering algorithm for the analysis of dynamic network data
Feldt, S.; Waddell, J; Hetrick, V. L.; Berke, J. D.; Żochowski, M
2009-01-01
We formulate a technique for the detection of functional clusters in discrete event data. The advantage of this algorithm is that no prior knowledge of the number of functional groups is needed, as our procedure progressively combines data traces and derives the optimal clustering cutoff in a simple and intuitive manner through the use of surrogate data sets. In order to demonstrate the power of this algorithm to detect changes in network dynamics and connectivity, we apply it to both simulat...
Bayesian network models in brain functional connectivity analysis
Ide, Jaime S.; Zhang, Sheng; Chiang-shan R. Li
2013-01-01
Much effort has been made to better understand the complex integration of distinct parts of the human brain using functional magnetic resonance imaging (fMRI). Altered functional connectivity between brain regions is associated with many neurological and mental illnesses, such as Alzheimer and Parkinson diseases, addiction, and depression. In computational science, Bayesian networks (BN) have been used in a broad range of studies to model complex data set in the presence of uncertainty and wh...
Deciphering living networks : Perturbation strategies for functional genomics
Fuente van Bentem, A. de la
2006-01-01
Thesis: Deciphering living networks: Perturbation strategies for functional genomics Alberto de la Fuente alf@crs4.it Molecular Cell Physiology Free University Amsterdam Advisors: Prof.Dr. H.V. Westerhoff Prof.Dr. J.L. Snoep Supervisor: Dr. P.J. Mendes Using modern experimental techn
Systems analysis of biological networks in skeletal muscle function.
Smith, Lucas R; Meyer, Gretchen; Lieber, Richard L
2013-01-01
Skeletal muscle function depends on the efficient coordination among subcellular systems. These systems are composed of proteins encoded by a subset of genes, all of which are tightly regulated. In the cases where regulation is altered because of disease or injury, dysfunction occurs. To enable objective analysis of muscle gene expression profiles, we have defined nine biological networks whose coordination is critical to muscle function. We begin by describing the expression of proteins necessary for optimal neuromuscular junction function that results in the muscle cell action potential. That action potential is transmitted to proteins involved in excitation-contraction coupling enabling Ca(2+) release. Ca(2+) then activates contractile proteins supporting actin and myosin cross-bridge cycling. Force generated by cross-bridges is transmitted via cytoskeletal proteins through the sarcolemma and out to critical proteins that support the muscle extracellular matrix. Muscle contraction is fueled through many proteins that regulate energy metabolism. Inflammation is a common response to injury that can result in alteration of many pathways within muscle. Muscle also has multiple pathways that regulate size through atrophy or hypertrophy. Finally, the isoforms associated with fast muscle fibers and their corresponding isoforms in slow muscle fibers are delineated. These nine networks represent important biological systems that affect skeletal muscle function. Combining high-throughput systems analysis with advanced networking software will allow researchers to use these networks to objectively study skeletal muscle systems. PMID:23188744
Virtual Networking Performance in OpenStack Platform for Network Function Virtualization
Directory of Open Access Journals (Sweden)
Franco Callegati
2016-01-01
Full Text Available The emerging Network Function Virtualization (NFV paradigm, coupled with the highly flexible and programmatic control of network devices offered by Software Defined Networking solutions, enables unprecedented levels of network virtualization that will definitely change the shape of future network architectures, where legacy telco central offices will be replaced by cloud data centers located at the edge. On the one hand, this software-centric evolution of telecommunications will allow network operators to take advantage of the increased flexibility and reduced deployment costs typical of cloud computing. On the other hand, it will pose a number of challenges in terms of virtual network performance and customer isolation. This paper intends to provide some insights on how an open-source cloud computing platform such as OpenStack implements multitenant network virtualization and how it can be used to deploy NFV, focusing in particular on packet forwarding performance issues. To this purpose, a set of experiments is presented that refer to a number of scenarios inspired by the cloud computing and NFV paradigms, considering both single tenant and multitenant scenarios. From the results of the evaluation it is possible to highlight potentials and limitations of running NFV on OpenStack.
Piraino, P; Ricciardi, A; Salzano, G; Zotta, T; Parente, E
2006-08-01
Conventional multivariate statistical techniques (hierarchical cluster analysis, linear discriminant analysis) and unsupervised (Kohonen Self Organizing Map) and supervised (Bayesian network) artificial neural networks were compared for as tools for the classification and identification of 352 SDS-PAGE patterns of whole cell proteins of lactic acid bacteria belonging to 22 species of the genera Lactobacillus, Leuconostoc, Enterococcus, Lactococcus and Streptococcus including 47 reference strains. Electrophoretic data were pre-treated using the logistic weighting function described by Piraino et al. [Piraino, P., Ricciardi, A., Lanorte, M. T., Malkhazova, I., Parente, E., 2002. A new procedure for data reduction in electrophoretic fingerprints of whole-cell proteins. Biotechnol. Lett. 24, 1477-1482]. Hierarchical cluster analysis provided a satisfactory classification of the patterns but was unable to discriminate some species (Leuconostoc, Lb. sakei/Lb. curvatus, Lb. acidophilus/Lb. helveticus, Lb. plantarum/Lb. paraplantarum, Lc. lactis/Lc. raffinolactis). A 7x7 Kohonen self-organizing map (KSOM), trained with the patterns of the reference strains, provided a satisfactory classification of the patterns and was able to discriminate more species than hierarchical cluster analysis. The map was used in predictive mode to identify unknown strains and provided results which in 85.5% of cases matched the classification obtained by hierarchical cluster analysis. Two supervised tools, linear discriminant analysis and a 23:5:2 Bayesian network were proven to be highly effective in the discrimination of SDS-PAGE patterns of Lc. lactis from those of other species. We conclude that data reduction by logistic weighting coupled to traditional multivariate statistical analysis or artificial neural networks provide an effective tool for the classification and identification of lactic acid bacteria on the basis of SDS-PAGE patterns of whole cell proteins. PMID:16480784
Parand, K.; Abbasbandy, S.; Kazem, S.; Rad, J. A.
2011-11-01
In this paper two common collocation approaches based on radial basis functions (RBFs) have been considered; one is computed through the differentiation process (DRBF) and the other one is computed through the integration process (IRBF). We investigate these two approaches on the Volterra's Population Model which is an integro-differential equation without converting it to an ordinary differential equation. To solve the problem, we use four well-known radial basis functions: Multiquadrics (MQ), Inverse multiquadrics (IMQ), Gaussian (GA) and Hyperbolic secant (sech) which is a newborn RBF. Numerical results and residual norm (‖R(t)‖2) show good accuracy and rate of convergence of two common approaches.
Vitkin, Edward; Shlomi, Tomer
2012-01-01
Genome-scale metabolic network reconstructions are considered a key step in quantifying the genotype-phenotype relationship. We present a novel gap-filling approach, MetabolIc Reconstruction via functionAl GEnomics (MIRAGE), which identifies missing network reactions by integrating metabolic flux analysis and functional genomics data. MIRAGE's performance is demonstrated on the reconstruction of metabolic network models of E. coli and Synechocystis sp. and validated via existing networks for ...
International Nuclear Information System (INIS)
An important problem in engineering is the identification of nonlinear systems, among them radial basis function neural networks (RBF-NN) using Gaussian activation functions models, which have received particular attention due to their potential to approximate nonlinear behavior. Several design methods have been proposed for choosing the centers and spread of Gaussian functions and training the RBF-NN. The selection of RBF-NN parameters such as centers, spreads, and weights can be understood as a system identification problem. This paper presents a hybrid training approach based on clustering methods (k-means and c-means) to tune the centers of Gaussian functions used in the hidden layer of RBF-NNs. This design also uses particle swarm optimization (PSO) for centers (local clustering search method) and spread tuning, and the Penrose-Moore pseudoinverse for the adjustment of RBF-NN weight outputs. Simulations involving this RBF-NN design to identify Lorenz's chaotic system indicate that the performance of the proposed method is superior to that of the conventional RBF-NN trained for k-means and the Penrose-Moore pseudoinverse for multi-step ahead forecasting
Intrinsic network activity in tinnitus investigated using functional MRI.
Leaver, Amber M; Turesky, Ted K; Seydell-Greenwald, Anna; Morgan, Susan; Kim, Hung J; Rauschecker, Josef P
2016-08-01
Tinnitus is an increasingly common disorder in which patients experience phantom auditory sensations, usually ringing or buzzing in the ear. Tinnitus pathophysiology has been repeatedly shown to involve both auditory and non-auditory brain structures, making network-level studies of tinnitus critical. In this magnetic resonance imaging (MRI) study, two resting-state functional connectivity (RSFC) approaches were used to better understand functional network disturbances in tinnitus. First, we demonstrated tinnitus-related reductions in RSFC between specific brain regions and resting-state networks (RSNs), defined by independent components analysis (ICA) and chosen for their overlap with structures known to be affected in tinnitus. Then, we restricted ICA to data from tinnitus patients, and identified one RSN not apparent in control data. This tinnitus RSN included auditory-sensory regions like inferior colliculus and medial Heschl's gyrus, as well as classically non-auditory regions like the mediodorsal nucleus of the thalamus, striatum, lateral prefrontal, and orbitofrontal cortex. Notably, patients' reported tinnitus loudness was positively correlated with RSFC between the mediodorsal nucleus and the tinnitus RSN, indicating that this network may underlie the auditory-sensory experience of tinnitus. These data support the idea that tinnitus involves network dysfunction, and further stress the importance of communication between auditory-sensory and fronto-striatal circuits in tinnitus pathophysiology. Hum Brain Mapp 37:2717-2735, 2016. © 2016 The Authors Human Brain Mapping Published by Wiley Periodicals, Inc. PMID:27091485
Quan, Austin; Osorio, Ivan; Ohira, Toru; Milton, John
2011-12-01
Resonance can occur in bistable dynamical systems due to the interplay between noise and delay (τ) in the absence of a periodic input. We investigate resonance in a two-neuron model with mutual time-delayed inhibitory feedback. For appropriate choices of the parameters and inputs three fixed-point attractors co-exist: two are stable and one is unstable. In the absence of noise, delay-induced transient oscillations (referred to herein as DITOs) arise whenever the initial function is tuned sufficiently close to the unstable fixed-point. In the presence of noisy perturbations, DITOs arise spontaneously. Since the correlation time for the stationary dynamics is ˜τ, we approximated a higher order Markov process by a three-state Markov chain model by rescaling time as t → 2sτ, identifying the states based on whether the sub-intervals were completely confined to one basin of attraction (the two stable attractors) or straddled the separatrix, and then determining the transition probability matrix empirically. The resultant Markov chain model captured the switching behaviors including the statistical properties of the DITOs. Our observations indicate that time-delayed and noisy bistable dynamical systems are prone to generate DITOs as switches between the two attractors occur. Bistable systems arise transiently in situations when one attractor is gradually replaced by another. This may explain, for example, why seizures in certain epileptic syndromes tend to occur as sleep stages change.
Application of Polynomial and Radial Basis Function Maps to Signal Masking
Energy Technology Data Exchange (ETDEWEB)
Damiano, B.
1998-01-01
The objective of this research was to develop and demonstrate a technique for encrypting information by using a masking signal that closely approximates local ambient noise. Signal masking techniques developed to date have used nonlinear differential equations, spread spectrum, and various modulation schemes to encode information. While these techniques can effectively hide a signal, the resulting masks may not appear as ambient noise to an observer. The advantage of the proposed technique over commonly used masking methods is that the transmitted signal will appear as normal background noise, thus greatly reducing the probability of detection and exploitation. A promising near-term application of this technology presents itself in the area of clandestine minefield reconnaissance in shallow water areas. Shallow water mine-counter-mine (SWMCM) activity is essential for minefield avoidance, efficient minefield clearance, and effective selection of transit lanes within minefields. A key technology area for SWMCM is the development of special sonar waveforms with low probability of exploitation/intercept (LPE/LPI) attributes. In addition to LPE/LPI sonar, this technology has the potential to enable significant improvements in underwater acoustic communications. For SWMCM, the chaotic waveform research provides a mechanism for encrypted communications between a submarine (SSN) and an unmanned underwater vehicle (UUV) via an acoustic channel. Acoustic SSN/UUV communications would eliminate the need for a fiberoptic link between the two vessels, thus increasing the robustness of SWMCM. Similar applications may exist in the areas of radar masking and secure communications. The original approach called for the use of polynomial maps to generate a masking signal. Because polynomial maps were found to have highly restrictive stability criteria, the approach was modified to use radial basis function (RBF) maps. they have shown that stable RBF maps that closely approximate an
Relationship between topology and functions in metabolic network evolution
Institute of Scientific and Technical Information of China (English)
WANG Zhuo; CHEN Qi; LIU Lei
2009-01-01
What is the relationship between the topological connections among enzymes and their functions during metabolic network evolution? Does this relationship show similarity among closely related or-ganisms? Here we investigated the relationship between enzyme connectivity and functions in meta-bolic networks of chloroplast and its endosymbiotic ancestor, cyanobacteria (Synechococcus sp. WH8102). Also several other species, including E. coil, Arabidopsis thaliana and Cyanidioschyzon merolae, were used for the comparison. We found that the average connectivity among different func-tional pathways and enzyme classifications (EC) was different in all the species examined. However, the average connectivity of enzymes in the same functional classification was quite similar between chloroplast and one representative of cyanobacteria, syw. In addition, the enzymes in the highly con-served modules between chloroplast and syw, such as amino acid metabolism, were highly connected compared with other modules. We also discovered that the isozymes of chloroplast and syw often had higher connectivity, corresponded to primary metabolism and also existed in conserved module. In conclusion, despite the drastic re-organization of metabolism in chloroplast during endosymbiosis, the relationship between network topology and functions is very similar between chloroplast and its pre-cursor cyanobacteria, which demonstrates that the relationship may be used as an indicator of the closeness in evolution.
Functional Connectivity Hubs and Networks in the Awake Marmoset Brain
Directory of Open Access Journals (Sweden)
Annabelle Marie Belcher
2016-03-01
Full Text Available In combination with advances in analytical methods, resting-state fMRI is allowing unprecedented access to achieve a better understanding of the network organization of the brain. Increasing evidence suggests that this architecture may incorporate highly functionally connected nodes, or hubs, and we have recently proposed local functional connectivity density (lFCD mapping to identify highly-connected nodes in the human brain. Here we imaged awake nonhuman primates to test whether, like the human brain, the marmoset brain contains functional connectivity hubs. Ten adult common marmosets (Callithrix jacchus were acclimated to mild, comfortable restraint using individualized helmets. Following restraint training, resting BOLD data were acquired during eight consecutive 10 min scans for each subject. lFCD revealed prominent cortical and subcortical hubs of connectivity across the marmoset brain; specifically, in primary and secondary visual cortices (V1/V2, higher-order visual association areas (A19M/V6[DM], posterior parietal and posterior cingulate areas (PGM and A23b/A31, thalamus, dorsal and ventral striatal areas (caudate, putamen, lateral septal nucleus, and anterior cingulate cortex (A24a. lFCD hubs were highly connected to widespread areas of the brain, and further revealed significant network-network interactions. These data provide a baseline platform for future investigations in a nonhuman primate model of the brain’s network topology.
Multifractal analysis of resting state networks in functional MRI
International Nuclear Information System (INIS)
It has been know for at least one decade that functional MRI time series display long-memory properties, such as power-law scaling in the frequency spectrum. Concomitantly, multivariate model free analysis of spatial patterns, such as spatial Independent Component Analysis (sICA), has been successfully used to segment from spontaneous activity Resting-State Networks (RSN) that correspond to known brain function. As recent neuro-scientific studies suggest a link between spectral properties of brain activity and cognitive processes, a burning question emerges: can temporal scaling properties offer new markers of brain states encoded in these large scale networks? In this paper, we combine two recent methodologies: group-level canonical ICA for multi-subject segmentation of brain network, and wavelet leader-based multifractal formalism for the analysis of RSN scaling properties. We identify the brain networks that elicit self-similarity or multi-fractality and explore which spectral properties correspond specifically to known functionally relevant processes in spontaneous activity. (authors)
Representations of highly-varying functions by perceptron networks
Czech Academy of Sciences Publication Activity Database
Kůrková, Věra
North Charleston: CreateSpace Independent Publishing Platform, 2013 - (Vinař, T.; Holeňa, M.; Lexa, M.; Peška, L.; Vojtáš, P.), s. 73-76 ISBN 978-1-4909-5208-6. [ITAT 2013. Conference on Theory and Practice of Information Technologies. Donovaly (SK), 11.09.2013-15.09.2013] R&D Projects: GA ČR GAP202/11/1368 Institutional support: RVO:67985807 Keywords : one-hidden-layer networks * perceptrons * Boolean functions * network complexity Subject RIV: IN - Informatics, Computer Science
Complexity of Shallow Networks Representing Functions with Large Variations
Czech Academy of Sciences Publication Activity Database
Kůrková, Věra; Sanguineti, M.
Cham: Springer, 2014 - (Wermter, S.; Weber , C.; Duch, W.; Honkela, T.; Koprinkova-Hristova, P.; Magg, S.; Palm, G.; Villa, A.), s. 331-338. (Lecture Notes in Computer Science. 8681). ISBN 978-3-319-11178-0. [ICANN 2014. International Conference on Artificial Neural Networks /24./. Hamburg (DE), 15.09.2014-19.09.2014] R&D Projects: GA MŠk(CZ) LD13002 Institutional support: RVO:67985807 Keywords : one-hidden-layer networks * model complexity * representations of multivariable functions * perceptrons * Gaussian SVMs Subject RIV: IN - Informatics, Computer Science
Neural network parametrization of deep-inelastic structure functions
International Nuclear Information System (INIS)
We construct a parametrization of deep-inelastic structure functions which retains information on experimental errors and correlations, and which does not introduce any theoretical bias while interpolating between existing data points. We generate a Monte Carlo sample of pseudo-data configurations and we train an ensemble of neural networks on them. This effectively provides us with a probability measure in the space of structure functions, within the whole kinematic region where data are available. This measure can then be used to determine the value of the structure function, its error, point-to-point correlations and generally the value and uncertainty of any function of the structure function itself. We apply this technique to the determination of the structure function F2 of the proton and deuteron, and a precision determination of the isotriplet combination F2[p-d]. We discuss in detail these results, check their stability and accuracy, and make them available in various formats for applications. (author)
Discovering cancer genes by integrating network and functional properties
Directory of Open Access Journals (Sweden)
Davis David P
2009-09-01
Full Text Available Abstract Background Identification of novel cancer-causing genes is one of the main goals in cancer research. The rapid accumulation of genome-wide protein-protein interaction (PPI data in humans has provided a new basis for studying the topological features of cancer genes in cellular networks. It is important to integrate multiple genomic data sources, including PPI networks, protein domains and Gene Ontology (GO annotations, to facilitate the identification of cancer genes. Methods Topological features of the PPI network, as well as protein domain compositions, enrichment of gene ontology categories, sequence and evolutionary conservation features were extracted and compared between cancer genes and other genes. The predictive power of various classifiers for identification of cancer genes was evaluated by cross validation. Experimental validation of a subset of the prediction results was conducted using siRNA knockdown and viability assays in human colon cancer cell line DLD-1. Results Cross validation demonstrated advantageous performance of classifiers based on support vector machines (SVMs with the inclusion of the topological features from the PPI network, protein domain compositions and GO annotations. We then applied the trained SVM classifier to human genes to prioritize putative cancer genes. siRNA knock-down of several SVM predicted cancer genes displayed greatly reduced cell viability in human colon cancer cell line DLD-1. Conclusion Topological features of PPI networks, protein domain compositions and GO annotations are good predictors of cancer genes. The SVM classifier integrates multiple features and as such is useful for prioritizing candidate cancer genes for experimental validations.
Chen, Quan; Chen, Xingui; He, Xiaoxuan; Wang, Lu; Wang, Kai; Qiu, Bensheng
2016-08-01
Consistent structural and functional abnormities have been detected in the salience network (SN) and the central-executive network (CEN) in schizophrenia. SN, known for its critical role in switching CEN and default-mode network (DMN) during cognitively demanding tasks, is proved to show aberrant regulation on the interaction between DMN and CEN in schizophrenia. However, it has not been elucidated whether there is a direct alteration of structural and functional connectivity between SN and CEN. 22 schizophrenia patients and 21 healthy controls were recruited for functional magnetic resonance imaging (fMRI) and diffusion tensor imaging (DTI) in present study. The results show that schizophrenia patients had lower fractional anisotropy (FA) in right inferior long fasciculus (ILF), left inferior fronto-occipital fasciculus (IFOF) and callosal body than healthy controls. Significantly reduced functional connectivity was also found between right fronto-insular cortex (rFIC) and right posterior parietal cortex (rPPC). FA in right ILF was positively correlated with the functional connectivity of rFIC-rPPC. Therefore, we proposed a disruption of structural and functional connectivity and a positive anatomo-functional relationship in SN-CEN circuit, which might account for a core feature of schizophrenia. PMID:27233217
Structure network analysis to gain insights into GPCR function.
Fanelli, Francesca; Felline, Angelo; Raimondi, Francesco; Seeber, Michele
2016-04-15
G protein coupled receptors (GPCRs) are allosteric proteins whose functioning fundamentals are the communication between the two poles of the helix bundle. Protein structure network (PSN) analysis is one of the graph theory-based approaches currently used to investigate the structural communication in biomolecular systems. Information on system's dynamics can be provided by atomistic molecular dynamics (MD) simulations or coarse grained elastic network models paired with normal mode analysis (ENM-NMA). The present review article describes the application of PSN analysis to uncover the structural communication in G protein coupled receptors (GPCRs). Strategies to highlight changes in structural communication upon misfolding, dimerization and activation are described. Focus is put on the ENM-NMA-based strategy applied to the crystallographic structures of rhodopsin in its inactive (dark) and signalling active (meta II (MII)) states, highlighting changes in structure network and centrality of the retinal chromophore in differentiating the inactive and active states of the receptor. PMID:27068978
Reliable distribution networks design with nonlinear fortification function
Li, Qingwei; Savachkin, Alex
2016-03-01
Distribution networks have been facing an increased exposure to the risk of unpredicted disruptions causing significant economic losses. The current literature features a limited number of studies considering fortification of network facilities. In this paper, we develop a reliable uncapacitated fixed-charge location model with fortification to support the design of distribution networks. The model considers heterogeneous facility failure probabilities, one layer of supplier backup, and facility fortification within a finite budget. Facility reliability improvement is modelled as a nonlinear function of fortification investment. The problem is formulated as a nonlinear mixed integer programming model proven to be ?-hard. A Lagrangian relaxation-based heuristic algorithm is developed and its computational efficiency for solving large-scale problems is demonstrated.
EIGENVALUE FUNCTIONS IN EXCITATORY-INHIBITORY NEURONAL NETWORKS
Institute of Scientific and Technical Information of China (English)
Zhang Linghai
2004-01-01
We study the exponential stability of traveling wave solutions of nonlinear systems of integral differential equations arising from nonlinear, nonlocal, synaptically coupled, excitatory-inhibitory neuronal networks. We have proved that exponential stability of traveling waves is equivalent to linear stability. Moreover, if the real parts of nonzero spectrum of an associated linear differential operator have a uniform negative upper bound, namely, max{Reλ: λ∈σ(L), λ≠ 0} ≤ -D, for some positive constant D, and λ = 0 is an algebraically simple eigenvalue of , then the linear stability follows, where is the linear differential operator obtained by linearizing the nonlinear system about its traveling wave and σ(L) denotes the spectrum of . The main aim of this paper is to construct complex analytic functions (also called eigenvalue or Evans functions) for exploring eigenvalues of linear differential operators to study the exponential stability of traveling waves. The zeros of the eigenvalue functions coincide with the eigenvalues of(L) .When studying multipulse solutions, some components of the traveling waves cross their thresholds for many times. These crossings cause great difficulty in the construction of the eigenvalue functions. In particular, we have to solve an over-determined system to construct the eigenvalue functions. By investigating asymptotic behaviors as z → -co of candidates for eigenfunctions, we find a way to construct the eigenvalue functions.By analyzing the zeros of the eigenvalue functions, we can establish the exponential stability of traveling waves arising from neuronal networks.
Hutto, Clayton; Briscoe, Erica; Trewhitt, Ethan
2012-01-01
Societal level macro models of social behavior do not sufficiently capture nuances needed to adequately represent the dynamics of person-to-person interactions. Likewise, individual agent level micro models have limited scalability - even minute parameter changes can drastically affect a model's response characteristics. This work presents an approach that uses agent-based modeling to represent detailed intra- and inter-personal interactions, as well as a system dynamics model to integrate societal-level influences via reciprocating functions. A Cognitive Network Model (CNM) is proposed as a method of quantitatively characterizing cognitive mechanisms at the intra-individual level. To capture the rich dynamics of interpersonal communication for the propagation of beliefs and attitudes, a Socio-Cognitive Network Model (SCNM) is presented. The SCNM uses socio-cognitive tie strength to regulate how agents influence--and are influenced by--one another's beliefs during social interactions. We then present experimental results which support the use of this network analytical approach, and we discuss its applicability towards characterizing and understanding human information processing.
Directory of Open Access Journals (Sweden)
Santosh A Helekar
2010-11-01
Full Text Available In multiple sclerosis (MS functional changes in connectivity due to cortical reorganization could lead to cognitive impairment (CI, or reflect a re-adjustment to reduce the clinical effects of widespread tissue damage. Such alterations in connectivity could result in changes in neural activation as assayed by executive function tasks. We examined cognitive function in MS patients with mild to moderate cognitive impairment and age-matched controls. We evaluated brain activity using functional magnetic resonance imaging (fMRI during the successful performance of the Wisconsin-card sorting (WCS task by MS patients, showing compensatory maintenance of normal function, as measured by response latency and error rate. To assess changes in functional connectivity throughout the brain, we performed a global functional brain network analysis by computing voxel by voxel correlations on the fMRI time series data and carrying out a hierarchical cluster analysis. We found that during the WCS task there is a significant reduction in the number of smaller size brain functional networks, and a change in the brain areas representing the nodes of these networks in MS patients compared to age-matched controls. There is also a concomitant increase in the strength of functional connections between brain loci separated at intermediate scale distances in these patients. These functional alterations might reflect compensatory neuroplastic reorganization underlying maintenance of relatively normal cognitive function in the face of white matter lesions and cortical atrophy produced by MS.
Reasoning on the Basis of Fantasy Content: Two Studies with High-Functioning Autistic Adolescents
Morsanyi, Kinga; Handley, Simon J.
2012-01-01
Reasoning about problems with empirically false content can be hard, as the inferences that people draw are heavily influenced by their background knowledge. However, presenting empirically false premises in a fantasy context helps children and adolescents to disregard their beliefs, and to reason on the basis of the premises. The aim of the…
SophieGaboyard-Niay
2012-01-01
In a previous study (Brugeaud et al., 2007), we observed spontaneous restoration of the vestibular function in young adult rodents following excitotoxic injury of the neuronal network of vestibular endorgans. The functional restoration was supported by a repair of synaptic contacts between hair cells and primary vestibular neurons. This process was observed in 2/3 of the animals studied and occurred within five days following the synapse insult. To assess whether structural plasticity is a fu...
Disrupted Brain Functional Network Architecture in Chronic Tinnitus Patients
Chen, Yu-Chen; Feng, Yuan; Xu, Jin-Jing; Mao, Cun-Nan; Xia, Wenqing; Ren, Jun; Yin, Xindao
2016-01-01
Purpose: Resting-state functional magnetic resonance imaging (fMRI) studies have demonstrated the disruptions of multiple brain networks in tinnitus patients. Nonetheless, several studies found no differences in network processing between tinnitus patients and healthy controls (HCs). Its neural bases are poorly understood. To identify aberrant brain network architecture involved in chronic tinnitus, we compared the resting-state fMRI (rs-fMRI) patterns of tinnitus patients and HCs. Materials and Methods: Chronic tinnitus patients (n = 24) with normal hearing thresholds and age-, sex-, education- and hearing threshold-matched HCs (n = 22) participated in the current study and underwent the rs-fMRI scanning. We used degree centrality (DC) to investigate functional connectivity (FC) strength of the whole-brain network and Granger causality to analyze effective connectivity in order to explore directional aspects involved in tinnitus. Results: Compared to HCs, we found significantly increased network centrality in bilateral superior frontal gyrus (SFG). Unidirectionally, the left SFG revealed increased effective connectivity to the left middle orbitofrontal cortex (OFC), left posterior lobe of cerebellum (PLC), left postcentral gyrus, and right middle occipital gyrus (MOG) while the right SFG exhibited enhanced effective connectivity to the right supplementary motor area (SMA). In addition, the effective connectivity from the bilateral SFG to the OFC and SMA showed positive correlations with tinnitus distress. Conclusions: Rs-fMRI provides a new and novel method for identifying aberrant brain network architecture. Chronic tinnitus patients have disrupted FC strength and causal connectivity mostly in non-auditory regions, especially the prefrontal cortex (PFC). The current findings will provide a new perspective for understanding the neuropathophysiological mechanisms in chronic tinnitus. PMID:27458377
Ecological interaction and phylogeny, studying functionality on composed networks
Cruz, Claudia P. T.; Fonseca, Carlos Roberto; Corso, Gilberto
2012-02-01
We study a class of composed networks that are formed by two tree networks, TP and TA, whose end points touch each other through a bipartite network BPA. We explore this network using a functional approach. We are interested in how much the topology, or the structure, of TX (X=A or P) determines the links of BPA. This composed structure is a useful model in evolutionary biology, where TP and TA are the phylogenetic trees of plants and animals that interact in an ecological community. We make use of ecological networks of dispersion of fruits, which are formed by frugivorous animals and plants with fruits; the animals, usually birds, eat fruits and disperse their seeds. We analyse how the phylogeny of TX determines or is correlated with BPA using a Monte Carlo approach. We use the phylogenetic distance among elements that interact with a given species to construct an index κ that quantifies the influence of TX over BPA. The algorithm is based on the assumption that interaction matrices that follows a phylogeny of TX have a total phylogenetic distance smaller than the average distance of an ensemble of Monte Carlo realisations. We find that the effect of phylogeny of animal species is more pronounced in the ecological matrix than plant phylogeny.
Population spikes in cortical networks during different functional states.
Directory of Open Access Journals (Sweden)
Shirley eMark
2012-07-01
Full Text Available Brain computational challenges vary between behavioral states. Engaged animals react according to incoming sensory information, while in relaxed and sleeping states consolidation of the learned information is believed to take place. Different states are characterized by different forms of cortical activity. We study a possible neuronal mechanism for generating these diverse dynamics and suggest their possible functional significance. Previous studies demonstrated that brief synchronized increase in a neural firing (Population Spikes can be generated in homogenous recurrent neural networks with short-term synaptic depression. Here we consider more realistic networks with clustered architecture. We show that the level of synchronization in neural activity can be controlled smoothly by network parameters. The network shifts from asynchronous activity to a regime in which clusters synchronized separately, then, the synchronization between the clusters increases gradually to fully synchronized state. We examine the effects of different synchrony levels on the transmission of information by the network. We find that the regime of intermediate synchronization is preferential for the flow of information between sparsely connected areas. Based on these results, we suggest that the regime of intermediate synchronization corresponds to engaged behavioral state of the animal, while global synchronization is exhibited during relaxed and sleeping states.
Salsano, Stefano; Blefari-Melazzi, Nicola; Presti, Francesco Lo; Siracusano, Giuseppe; Ventre, Pier Luigi
2014-01-01
In this paper we introduce the Generalized Virtual Networking (GVN) concept. GVN provides a framework to influence the routing of packets based on service level information that is carried in the packets. It is based on a protocol header inserted between the Network and Transport layers, therefore it can be seen as a layer 3.5 solution. Technically, GVN is proposed as a new transport layer protocol in the TCP/IP protocol suite. An IP router that is not GVN capable will simply process the IP d...
Basis for a functional capacity evaluation methodology for patients with work-related neck disorders
Reesink, David D.; Jorritsma, Wim; Reneman, Michiel F
2007-01-01
Neck pain is a common musculoskeletal complaint and a relationship with reduced work-related functional capacity is assumed. A validated instrument to test functional capacity of patients with neck pain is unavailable. The objective of this study was to develop a Functional Capacity Evaluation (FCE), which is content valid for determining functional capacity in patients with work related neck disorders (WRND). A review of epidemiological review literature was conducted to identify physical ri...
Yang, Jie; Andric, Michael; Mathew, Mili M
2015-10-01
Gestures play an important role in face-to-face communication and have been increasingly studied via functional magnetic resonance imaging. Although a large amount of data has been provided to describe the neural substrates of gesture comprehension, these findings have never been quantitatively summarized and the conclusion is still unclear. This activation likelihood estimation meta-analysis investigated the brain networks underpinning gesture comprehension while considering the impact of gesture type (co-speech gestures vs. speech-independent gestures) and task demand (implicit vs. explicit) on the brain activation of gesture comprehension. The meta-analysis of 31 papers showed that as hand actions, gestures involve a perceptual-motor network important for action recognition. As meaningful symbols, gestures involve a semantic network for conceptual processing. Finally, during face-to-face interactions, gestures involve a network for social emotive processes. Our finding also indicated that gesture type and task demand influence the involvement of the brain networks during gesture comprehension. The results highlight the complexity of gesture comprehension, and suggest that future research is necessary to clarify the dynamic interactions among these networks. PMID:26271719
Nuclear charge radii: Density functional theory meets Bayesian neural networks
Utama, Raditya; Piekarewicz, Jorge
2016-01-01
The distribution of electric charge in atomic nuclei is fundamental to our understanding of the complex nuclear dynamics and a quintessential observable to validate nuclear structure models. We explore a novel approach that combines sophisticated models of nuclear structure with Bayesian neural networks (BNN) to generate predictions for the charge radii of thousands of nuclei throughout the nuclear chart. A class of relativistic energy density functionals is used to provide robust predictions for nuclear charge radii. In turn, these predictions are refined through Bayesian learning for a neural network that is trained using residuals between theoretical predictions and the experimental data. Although predictions obtained with density functional theory provide a fairly good description of experiment, our results show significant improvement (better than 40%) after BNN refinement. Moreover, these improved results for nuclear charge radii are supplemented with theoretical error bars. We have successfully demonst...
Identification of Functional Information Subgraphs in Complex Networks
International Nuclear Information System (INIS)
We present a general information theoretic approach for identifying functional subgraphs in complex networks. We show that the uncertainty in a variable can be written as a sum of information quantities, where each term is generated by successively conditioning mutual informations on new measured variables in a way analogous to a discrete differential calculus. The analogy to a Taylor series suggests efficient optimization algorithms for determining the state of a target variable in terms of functional groups of other nodes. We apply this methodology to electrophysiological recordings of cortical neuronal networks grown in vitro. Each cell's firing is generally explained by the activity of a few neurons. We identify these neuronal subgraphs in terms of their redundant or synergetic character and reconstruct neuronal circuits that account for the state of target cells
An editor for the maintenance and use of a bank of contracted Gaussian basis set functions
International Nuclear Information System (INIS)
A bank of basis sets to be used in ab-initio calculations has been created. The bases are sets of contracted Gaussian type orbitals to be used as input to any molecular integral package. In this communication we shall describe the organization of the bank and a portable editor program which was designed for its maintenance and use. This program is operated by commands and it may be used to obtain any kind of information about the bases in the bank as well as to produce output to be directly used as input for different integral programs. The editor may also be used to format basis sets in the conventional way utilized in publications, as well as to generate a complete, or partial, manual of the contents of the bank if so desired. (orig.)
Model Complexities of Shallow Networks Representing Highly Varying Functions
Czech Academy of Sciences Publication Activity Database
Kůrková, Věra; Sanguineti, M.
2016-01-01
Roč. 171, 1 January (2016), s. 598-604. ISSN 0925-2312 R&D Projects: GA MŠk(CZ) LD13002 Grant ostatní: grant for Visiting Professors(IT) GNAMPA-INdAM Institutional support: RVO:67985807 Keywords : shallow networks * model complexity * highly varying functions * Chernoff bound * perceptrons * Gaussian kernel units Subject RIV: IN - Informatics, Computer Science Impact factor: 2.083, year: 2014
Memory Networks in Tinnitus: A Functional Brain Image Study
Laureano, Maura Regina; Onishi, Ektor Tsuneo; Bressan, Rodrigo Affonseca; Castiglioni, Mario Luiz Vieira; Batista, Ilza Rosa; Reis, Marilia Alves; Garcia, Michele Vargas; de Andrade, Adriana Neves; de Almeida, Roberta Ribeiro; Garrido, Griselda J.; Jackowski, Andrea Parolin
2014-01-01
Tinnitus is characterized by the perception of sound in the absence of an external auditory stimulus. The network connectivity of auditory and non-auditory brain structures associated with emotion, memory and attention are functionally altered in debilitating tinnitus. Current studies suggest that tinnitus results from neuroplastic changes in the frontal and limbic temporal regions. The objective of this study was to use Single-Photon Emission Computed Tomography (SPECT) to evaluate changes i...
Platelet Serotonin Transporter Function Predicts Default-Mode Network Activity
Christian Scharinger; Ulrich Rabl; Christian H. Kasess; Meyer, Bernhard M.; Tina Hofmaier; Kersten Diers; Lucie Bartova; Gerald Pail; Wolfgang Huf; Zeljko Uzelac; Beate Hartinger; Klaudius Kalcher; Thomas Perkmann; Helmuth Haslacher; Andreas Meyer-Lindenberg
2014-01-01
Background The serotonin transporter (5-HTT) is abundantly expressed in humans by the serotonin transporter gene SLC6A4 and removes serotonin (5-HT) from extracellular space. A blood-brain relationship between platelet and synaptosomal 5-HT reuptake has been suggested, but it is unknown today, if platelet 5-HT uptake can predict neural activation of human brain networks that are known to be under serotonergic influence. Methods A functional magnetic resonance study was performed in 48 healthy...
Exploring functional connectivity networks with multichannel brain array coils.
Anteraper, Sheeba Arnold; Whitfield-Gabrieli, Susan; Keil, Boris; Shannon, Steven; Gabrieli, John D; Triantafyllou, Christina
2013-01-01
The use of multichannel array head coils in functional and structural magnetic resonance imaging (MRI) provides increased signal-to-noise ratio (SNR), higher sensitivity, and parallel imaging capabilities. However, their benefits remain to be systematically explored in the context of resting-state functional connectivity MRI (fcMRI). In this study, we compare signal detectability within and between commercially available multichannel brain coils, a 32-Channel (32Ch), and a 12-Channel (12Ch) at 3T, in a high-resolution regime to accurately map resting-state networks. We investigate whether the 32Ch coil can extract and map fcMRI more efficiently and robustly than the 12Ch coil using seed-based and graph-theory-based analyses. Our findings demonstrate that although the 12Ch coil can be used to reveal resting-state connectivity maps, the 32Ch coil provides increased detailed functional connectivity maps (using seed-based analysis) as well as increased global and local efficiency, and cost (using graph-theory-based analysis), in a number of widely reported resting-state networks. The exploration of subcortical networks, which are scarcely reported due to limitations in spatial-resolution and coil sensitivity, also proved beneficial with the 32Ch coil. Further, comparisons regarding the data acquisition time required to successfully map these networks indicated that scan time can be significantly reduced by 50% when a coil with increased number of channels (i.e., 32Ch) is used. Switching to multichannel arrays in resting-state fcMRI could, therefore, provide both detailed functional connectivity maps and acquisition time reductions, which could further benefit imaging special subject populations, such as patients or pediatrics who have less tolerance in lengthy imaging sessions. PMID:23510203
Selectively Disrupted Functional Connectivity Networks in Type 2 Diabetes Mellitus
Chen, Yaojing; Liu, Zhen; Zhang, Junying; Tian, Guihua; Li, Linzi; Zhang, Sisi; Li, Xin; Chen, Kewei; Zhang, Zhanjun
2015-01-01
Background The high prevalence of type 2 diabetes mellitus (T2DM) in individuals over 65 years old and cognitive deficits caused by T2DM have attracted broad attention. The pathophysiological mechanism of T2DM-induced cognitive impairments, however, remains poorly understood. Previous studies have suggested that the cognitive impairments can be attributed not only to local functional and structural abnormalities but also to specific brain networks. Thus, our aim is to investigate the chang...
Selectively disrupted functional connectivity networks in type 2 diabetes mellitus
Zhen Liu; Guihua Tian; Linzi Li; Kewei Chen
2015-01-01
Background: The high prevalence of type 2 diabetes mellitus (T2DM) in individuals over 65 years old and cognitive deficits caused by T2DM have attracted broad attention. The pathophysiological mechanism of T2DM induced cognitive impairments, however, remains poorly understood. Previous studies have suggested that the cognitive impairments can be attributed not merely to local functional and structural abnormalities but also to specific brain networks. Thus, we aimed to investigate the changes...
Basis-free expressions for derivatives of a subclass of nonsymmetric isotropic tensor functions
Institute of Scientific and Technical Information of China (English)
无
2007-01-01
The present paper generalizes the method for solving the derivatives of symmetric isotropic tensor-valued functions proposed by Dui and Chen (2004) to a subclass of nonsymmetric tensor functions satisfying the commutative condition.This subclass of tensor functions is more general than those investigated by the existing methods.In the case of three distinct eigenvalues, the commutativity makes it possible to introduce two scalar functions, which will be used to construct the general nonsymmetric tensor functions and their derivatives.In the cases of repeated eigenvalues, the results are acquired by taking limits.
Empirically Derived Basis Functions for Unsupervised Classification of Radial Profile Data
International Nuclear Information System (INIS)
We present an analysis of empirically derived basis vectors for feature detection in radial profile data. Our aim is to classify broad and peaked profiles, as well as to detect important events in the time-series evolution, using unsupervised techniques. Radial data often contains a continuum of profile shapes from broad to peaked, as such clustering methods may be unreliable. Here, we apply a singular value decomposition (SVD) to training data matrix, consisting of a concatenation of multichannel time-series data from 103 plasma discharges with good representation of the range of profiles. The largest SVD spatial basis vector (topo) represents the fundamental profile shape, while the second (orthogonal) topo has radial roots either side of the plasma centre. The structure of the second topo leads to its intuitive interpretation as a peakedness perturbation, a priori information is implicitly embedded through the selection of the coefficient of this basis vector as our classifier. The inverted topo matrix can be used to process test data, or for rapid, real time automated profile classification; with the classification confidence represented by the energy of the second coefficient compared to that of the higher order terms. The roots of the temporal derivative of the (smoothed) time-trace corresponding to topo 2 are used to located important events in evolution of radial profile. We show our technique applied to 16 channel bolometer data from the TJ-II heliac. The raw bolometer data requires reconstruction in order to provide a radial profile; however, by training on raw data and confirming our interpretation via the reconstruction of the topos, we can use raw data for classification and feature detection. This method is generalizable to other radial profile diagnostics, and can be used in an unsupervised manner. We show that the important basis vectors are not excessively sensitive to the (sensibly selected) training data. This document is made of an abstract and
Zhang, Jie; Cheng, Wei; Liu, Zhaowen; Zhang, Kai; Lei, Xu; Yao, Ye; Becker, Benjamin; Liu, Yicen; Kendrick, Keith M; Lu, Guangming; Feng, Jianfeng
2016-08-01
SEE MATTAR ET AL DOI101093/AWW151 FOR A SCIENTIFIC COMMENTARY ON THIS ARTICLE: Functional brain networks demonstrate significant temporal variability and dynamic reconfiguration even in the resting state. Currently, most studies investigate temporal variability of brain networks at the scale of single (micro) or whole-brain (macro) connectivity. However, the mechanism underlying time-varying properties remains unclear, as the coupling between brain network variability and neural activity is not readily apparent when analysed at either micro or macroscales. We propose an intermediate (meso) scale analysis and characterize temporal variability of the functional architecture associated with a particular region. This yields a topography of variability that reflects the whole-brain and, most importantly, creates an analytical framework to establish the fundamental relationship between variability of regional functional architecture and its neural activity or structural connectivity. We find that temporal variability reflects the dynamical reconfiguration of a brain region into distinct functional modules at different times and may be indicative of brain flexibility and adaptability. Primary and unimodal sensory-motor cortices demonstrate low temporal variability, while transmodal areas, including heteromodal association areas and limbic system, demonstrate the high variability. In particular, regions with highest variability such as hippocampus/parahippocampus, inferior and middle temporal gyrus, olfactory gyrus and caudate are all related to learning, suggesting that the temporal variability may indicate the level of brain adaptability. With simultaneously recorded electroencephalography/functional magnetic resonance imaging and functional magnetic resonance imaging/diffusion tensor imaging data, we also find that variability of regional functional architecture is modulated by local blood oxygen level-dependent activity and α-band oscillation, and is governed by the
Institute of Scientific and Technical Information of China (English)
Serena Morigi; Fiorella Sgallari
2009-01-01
This paper introduces the use of partition of unity method for the develop-ment of a high order finite volume discretization scheme on unstructured grids for solv-ing diffusion models based on partial differential equations. The unknown function and its gradient can be accurately reconstructed using high order optimal recovery based on radial basis functions. The methodology proposed is applied to the noise removal prob-lem in functional surfaces and images. Numerical results demonstrate the effectiveness of the new numerical approach and provide experimental order of convergence.
Unitary Networks from the Exact Renormalization of Wave Functionals
Fliss, Jackson R; Parrikar, Onkar
2016-01-01
The exact renormalization group (ERG) for $O(N)$ vector models (at large $N$) on flat Euclidean space can be interpreted as the bulk dynamics corresponding to a holographically dual higher spin gauge theory on $AdS_{d+1}$. This was established in the sense that at large $N$ the generating functional of correlation functions of single trace operators is reproduced by the on-shell action of the bulk higher spin theory, which is most simply presented in a first-order (phase space) formalism. In this paper, we extend the ERG formalism to the wave functionals of arbitrary states of the $O(N)$ vector model at the free fixed point. We find that the ERG flow of the ground state and a specific class of excited states is implemented by the action of unitary operators which can be chosen to be local. Consequently, the ERG equations provide a continuum notion of a tensor network. We compare this tensor network with the entanglement renormalization networks, MERA, and its continuum version, cMERA, which have appeared rece...
SoyFN: a knowledge database of soybean functional networks.
Xu, Yungang; Guo, Maozu; Liu, Xiaoyan; Wang, Chunyu; Liu, Yang
2014-01-01
Many databases for soybean genomic analysis have been built and made publicly available, but few of them contain knowledge specifically targeting the omics-level gene-gene, gene-microRNA (miRNA) and miRNA-miRNA interactions. Here, we present SoyFN, a knowledge database of soybean functional gene networks and miRNA functional networks. SoyFN provides user-friendly interfaces to retrieve, visualize, analyze and download the functional networks of soybean genes and miRNAs. In addition, it incorporates much information about KEGG pathways, gene ontology annotations and 3'-UTR sequences as well as many useful tools including SoySearch, ID mapping, Genome Browser, eFP Browser and promoter motif scan. SoyFN is a schema-free database that can be accessed as a Web service from any modern programming language using a simple Hypertext Transfer Protocol call. The Web site is implemented in Java, JavaScript, PHP, HTML and Apache, with all major browsers supported. We anticipate that this database will be useful for members of research communities both in soybean experimental science and bioinformatics. Database URL: http://nclab.hit.edu.cn/SoyFN. PMID:24618044
Friese, Daniel H; Ringholm, Magnus; Gao, Bin; Ruud, Kenneth
2015-10-13
We present theory, implementation, and applications of a recursive scheme for the calculation of single residues of response functions that can treat perturbations that affect the basis set. This scheme enables the calculation of nonlinear light absorption properties to arbitrary order for other perturbations than an electric field. We apply this scheme for the first treatment of two-photon circular dichroism (TPCD) using London orbitals at the Hartree-Fock level of theory. In general, TPCD calculations suffer from the problem of origin dependence, which has so far been solved by using the velocity gauge for the electric dipole operator. This work now enables comparison of results from London orbital and velocity gauge based TPCD calculations. We find that the results from the two approaches both exhibit strong basis set dependence but that they are very similar with respect to their basis set convergence. PMID:26574270
Understanding the cost of change Function: A basis for using an effective small step change strategy
Pinto, Peter A.; Basheer M. Khumawala
2005-01-01
This paper develops the cost of change function under the Continuous Improvement (CI) paradigm advocated by quality gurus such as Deming, Taguchi, and Shingo. CI is considered to be focusing on "frame bending" or minor changes while Organizational Change (OC) is considered to be focusing on "frame breaking " or major changes. The cost of change function is modified to be a discrete function incorporating a "monitoring" cost component and a "doing" cost element, which leads to a better underst...
Sweet Taste Receptor Signaling Network: Possible Implication for Cognitive Functioning
Directory of Open Access Journals (Sweden)
Menizibeya O. Welcome
2015-01-01
Full Text Available Sweet taste receptors are transmembrane protein network specialized in the transmission of information from special “sweet” molecules into the intracellular domain. These receptors can sense the taste of a range of molecules and transmit the information downstream to several acceptors, modulate cell specific functions and metabolism, and mediate cell-to-cell coupling through paracrine mechanism. Recent reports indicate that sweet taste receptors are widely distributed in the body and serves specific function relative to their localization. Due to their pleiotropic signaling properties and multisubstrate ligand affinity, sweet taste receptors are able to cooperatively bind multiple substances and mediate signaling by other receptors. Based on increasing evidence about the role of these receptors in the initiation and control of absorption and metabolism, and the pivotal role of metabolic (glucose regulation in the central nervous system functioning, we propose a possible implication of sweet taste receptor signaling in modulating cognitive functioning.
Bubin, Sergiy; Adamowicz, Ludwik
2008-03-21
In this work we consider explicitly correlated complex Gaussian basis functions for expanding the wave function of an N-particle system with the L=1 total orbital angular momentum. We derive analytical expressions for various matrix elements with these basis functions including the overlap, kinetic energy, and potential energy (Coulomb interaction) matrix elements, as well as matrix elements of other quantities. The derivatives of the overlap, kinetic, and potential energy integrals with respect to the Gaussian exponential parameters are also derived and used to calculate the energy gradient. All the derivations are performed using the formalism of the matrix differential calculus that facilitates a way of expressing the integrals in an elegant matrix form, which is convenient for the theoretical analysis and the computer implementation. The new method is tested in calculations of two systems: the lowest P state of the beryllium atom and the bound P state of the positronium molecule (with the negative parity). Both calculations yielded new, lowest-to-date, variational upper bounds, while the number of basis functions used was significantly smaller than in previous studies. It was possible to accomplish this due to the use of the analytic energy gradient in the minimization of the variational energy. PMID:18361554
International Nuclear Information System (INIS)
Highlights: • A hybrid self-adaptive PSO–GA-RBF model is proposed for electricity demand prediction. • Each mixed-coding particle is composed by two coding parts of binary and real. • Five independent variables have been selected to predict future electricity consumption in Wuhan. • The proposed model has a simpler structure or higher estimating precision than other ANN models. • No matter what the scenario, the electricity consumption of Wuhan will grow rapidly. - Abstract: The present study proposes a hybrid Particle Swarm Optimization and Genetic Algorithm optimized Radial Basis Function (PSO–GA-RBF) neural network for prediction of annual electricity demand. In the model, each mixed-coding particle (or chromosome) is composed of two coding parts, binary and real, which optimizes the structure of the RBF by GA operation and the parameters of the basis and weights by a PSO–GA implementation. Five independent variables have been selected to predict future electricity consumption in Wuhan by using optimized networks. The results shows that (1) the proposed PSO–GA-RBF model has a simpler network structure (fewer hidden neurons) or higher estimation precision than other selected ANN models; and (2) no matter what the scenario, the electricity consumption of Wuhan will grow rapidly at average annual growth rates of about 9.7–11.5%. By 2020, the electricity demand in the planning scenario, the highest among the scenarios, will be 95.85 billion kW h. The lowest demand is estimated for the business-as-usual scenario, and will be 88.45 billion kW h
Quetiapine modulates functional connectivity in brain aggression networks.
Klasen, Martin; Zvyagintsev, Mikhail; Schwenzer, Michael; Mathiak, Krystyna A; Sarkheil, Pegah; Weber, René; Mathiak, Klaus
2013-07-15
Aggressive behavior is associated with dysfunctions in an affective regulation network encompassing amygdala and prefrontal areas such as orbitofrontal (OFC), anterior cingulate (ACC), and dorsolateral prefrontal cortex (DLPFC). In particular, prefrontal regions have been postulated to control amygdala activity by inhibitory projections, and this process may be disrupted in aggressive individuals. The atypical antipsychotic quetiapine successfully attenuates aggressive behavior in various disorders; the underlying neural processes, however, are unknown. A strengthened functional coupling in the prefrontal-amygdala system may account for these anti-aggressive effects. An inhibition of this network has been reported for virtual aggression in violent video games as well. However, there have been so far no in-vivo observations of pharmacological influences on corticolimbic projections during human aggressive behavior. In a double-blind, placebo-controlled study, quetiapine and placebo were administered for three successive days prior to an fMRI experiment. In this experiment, functional brain connectivity was assessed during virtual aggressive behavior in a violent video game and an aggression-free control task in a non-violent modification. Quetiapine increased the functional connectivity of ACC and DLPFC with the amygdala during virtual aggression, whereas OFC-amygdala coupling was attenuated. These effects were observed neither for placebo nor for the non-violent control. These results demonstrate for the first time a pharmacological modification of aggression-related human brain networks in a naturalistic setting. The violence-specific modulation of prefrontal-amygdala networks appears to control aggressive behavior and provides a neurobiological model for the anti-aggressive effects of quetiapine. PMID:23501053
Functional Cortical Network in Alpha Band Correlates with Social Bargaining
Billeke, Pablo; Zamorano, Francisco; Chavez, Mario; Cosmelli, Diego; Aboitiz, Francisco
2014-01-01
Solving demanding tasks requires fast and flexible coordination among different brain areas. Everyday examples of this are the social dilemmas in which goals tend to clash, requiring one to weigh alternative courses of action in limited time. In spite of this fact, there are few studies that directly address the dynamics of flexible brain network integration during social interaction. To study the preceding, we carried out EEG recordings while subjects played a repeated version of the Ultimatum Game in both human (social) and computer (non-social) conditions. We found phase synchrony (inter-site-phase-clustering) modulation in alpha band that was specific to the human condition and independent of power modulation. The strength and patterns of the inter-site-phase-clustering of the cortical networks were also modulated, and these modulations were mainly in frontal and parietal regions. Moreover, changes in the individuals’ alpha network structure correlated with the risk of the offers made only in social conditions. This correlation was independent of changes in power and inter-site-phase-clustering strength. Our results indicate that, when subjects believe they are participating in a social interaction, a specific modulation of functional cortical networks in alpha band takes place, suggesting that phase synchrony of alpha oscillations could serve as a mechanism by which different brain areas flexibly interact in order to adapt ongoing behavior in socially demanding contexts. PMID:25286240
The functional basis of wing patterning in Heliconius butterflies: the molecules behind mimicry.
Kronforst, Marcus R; Papa, Riccardo
2015-05-01
Wing-pattern mimicry in butterflies has provided an important example of adaptation since Charles Darwin and Alfred Russell Wallace proposed evolution by natural selection >150 years ago. The neotropical butterfly genus Heliconius played a central role in the development of mimicry theory and has since been studied extensively in the context of ecology and population biology, behavior, and mimicry genetics. Heliconius species are notable for their diverse color patterns, and previous crossing experiments revealed that much of this variation is controlled by a small number of large-effect, Mendelian switch loci. Recent comparative analyses have shown that the same switch loci control wing-pattern diversity throughout the genus, and a number of these have now been positionally cloned. Using a combination of comparative genetic mapping, association tests, and gene expression analyses, variation in red wing patterning throughout Heliconius has been traced back to the action of the transcription factor optix. Similarly, the signaling ligand WntA has been shown to control variation in melanin patterning across Heliconius and other butterflies. Our understanding of the molecular basis of Heliconius mimicry is now providing important insights into a variety of additional evolutionary phenomena, including the origin of supergenes, the interplay between constraint and evolvability, the genetic basis of convergence, the potential for introgression to facilitate adaptation, the mechanisms of hybrid speciation in animals, and the process of ecological speciation. PMID:25953905
Development of a Technical Basis and Guidance for Advanced SMR Function Allocation
Energy Technology Data Exchange (ETDEWEB)
Jacques Hugo; David Gertman; Jeffrey Joe; Ronal Farris; April Whaley; Heather Medema
2013-09-01
This report presents the results from three key activities for FY13 that influence the definition of new concepts of operations for advanced Small Modular Reactors (AdvSMR: a) the development of a framework for the analysis of the functional environmental, and structural attributes, b) the effect that new technologies and operational concepts would have on the way functions are allocated to humans or machines or combinations of the two, and c) the relationship between new concepts of operations, new function allocations, and human performance requirements.
Krishnamurthy, Thiagarajan
2005-01-01
Response construction methods using Moving Least Squares (MLS), Kriging and Radial Basis Functions (RBF) are compared with the Global Least Squares (GLS) method in three numerical examples for derivative generation capability. Also, a new Interpolating Moving Least Squares (IMLS) method adopted from the meshless method is presented. It is found that the response surface construction methods using the Kriging and RBF interpolation yields more accurate results compared with MLS and GLS methods. Several computational aspects of the response surface construction methods also discussed.
Czech Academy of Sciences Publication Activity Database
Bucha, B.; Bezděk, Aleš; Sebera, Josef; Janak, J.
2015-01-01
Roč. 36, č. 6 (2015), s. 773-801. ISSN 0169-3298 R&D Projects: GA ČR GA13-36843S Grant ostatní: SAV(SK) VEGA 1/0954/15 Institutional support: RVO:67985815 Keywords : spherical radial basis functions * spherical harmonics * geopotential Subject RIV: BN - Astronomy, Celestial Mechanics, Astrophysics Impact factor: 3.447, year: 2014
Neural Networks For Electrohydrodynamic Effect Modelling
Directory of Open Access Journals (Sweden)
Wiesław Wajs
2004-01-01
Full Text Available This paper presents currently achieved results concerning methods of electrohydrodynamiceffect used in geophysics simulated with feedforward networks trained with backpropagation algorithm, radial basis function networks and generalized regression networks.
Directory of Open Access Journals (Sweden)
Zholobova I. S.
2014-02-01
Full Text Available In this article we have shown the results of studying of biologically active connections in bentonite clays, carotene containing raw materials for the purpose of receiving functional feed additive for agricultural birds
Kolmann, Stephen J.; Jordan, Meredith J. T.
2010-02-01
One of the largest remaining errors in thermochemical calculations is the determination of the zero-point energy (ZPE). The fully coupled, anharmonic ZPE and ground state nuclear wave function of the SSSH radical are calculated using quantum diffusion Monte Carlo on interpolated potential energy surfaces (PESs) constructed using a variety of method and basis set combinations. The ZPE of SSSH, which is approximately 29 kJ mol-1 at the CCSD(T)/6-31G∗ level of theory, has a 4 kJ mol-1 dependence on the treatment of electron correlation. The anharmonic ZPEs are consistently 0.3 kJ mol-1 lower in energy than the harmonic ZPEs calculated at the Hartree-Fock and MP2 levels of theory, and 0.7 kJ mol-1 lower in energy at the CCSD(T)/6-31G∗ level of theory. Ideally, for sub-kJ mol-1 thermochemical accuracy, ZPEs should be calculated using correlated methods with as big a basis set as practicable. The ground state nuclear wave function of SSSH also has significant method and basis set dependence. The analysis of the nuclear wave function indicates that SSSH is localized to a single symmetry equivalent global minimum, despite having sufficient ZPE to be delocalized over both minima. As part of this work, modifications to the interpolated PES construction scheme of Collins and co-workers are presented.
Assessment of large basis shell model wave functions for the Li isotopes
International Nuclear Information System (INIS)
The Li isotopes are good examples with which the shell model can be tested for cluster-like behaviour, as large space (no core) shell model wave functions may be constructed. The cross sections and analysing power for the inelastic scattering of electron and proton scattering data for 6,7Li ground states were analysed using the same shell model wave functions. It was found that the results obtained by using 0ℎω structure model wave functions is unable to reproduce the magnitude of the data. Meanwhile, those obtained by using the larger space models are able to reproduce the low-angle part of the cross section, but all model results severely underestimate the cross section above 20 deg. Meanwhile, in the case of analysing power, all model calculations give reasonable representation of the data. 13 refs., 3 figs
Concepts of soil mapping as a basis for the assessment of soil functions
Baumgarten, Andreas
2014-05-01
Soil mapping systems in Europe have been designed mainly as a tool for the description of soil characteristics from a morphogenetic viewpoint. Contrasting to the American or FAO system, the soil development has been in the main focus of European systems. Nevertheless , recent developments in soil science stress the importance of the functions of soils with respect to the ecosystems. As soil mapping systems usually offer a sound and extensive database, the deduction of soil functions from "classic" mapping parameters can be used for local and regional assessments. According to the used pedo-transfer functions and mapping systems, tailored approaches can be chosen for different applications. In Austria, a system mainly for spatial planning purposes has been developed that will be presented and illustrated by means of best practice examples.
Cammi, Roberto
2013-01-01
This Brief presents the main aspects of the response functions theory (RFT) for molecular solutes described within the framework of the Polarizable Continuum Model (PCM). PCM is a solvation model for a Quantum Mechanical molecular system in which the solvent is represented as a continuum distribution of matter. Particular attention is devoted to the description of the basic features of the PCM model, and to the problems characterizing the study of the response function theory for molecules in solution with respect to the analogous theory on isolated molecules.
Energy-Latency Tradeoff for In-Network Function Computation in Random Networks
Balister, Paul; Anandkumar, Animashree; Willsky, Alan
2011-01-01
The problem of designing policies for in-network function computation with minimum energy consumption subject to a latency constraint is considered. The scaling behavior of the energy consumption under the latency constraint is analyzed for random networks, where the nodes are uniformly placed in growing regions and the number of nodes goes to infinity. The special case of sum function computation and its delivery to a designated root node is considered first. A policy which achieves order-optimal average energy consumption in random networks subject to the given latency constraint is proposed. The scaling behavior of the optimal energy consumption depends on the path-loss exponent of wireless transmissions and the dimension of the Euclidean region where the nodes are placed. The policy is then extended to computation of a general class of functions which decompose according to maximal cliques of a proximity graph such as the $k$-nearest neighbor graph or the geometric random graph. The modified policy achiev...
Evolving Sum and Composite Kernel Functions for Regularization Networks
Czech Academy of Sciences Publication Activity Database
Vidnerová, Petra; Neruda, Roman
Vol. 1. Heidelberg : Springer, 2011 - (Dobnikar, A.; Lotrič, U.; Šter, B.), s. 180-189 ISBN 978-3-642-20281-0. ISSN 0302-9743. - (Lecture Notes in Computer Science. 6593). [ICANNGA'2011. International Conference /10./. Ljubljana (SI), 14.04.2011-16.04.2011] R&D Projects: GA MŠk OC10047; GA AV ČR KJB100300804 Institutional research plan: CEZ:AV0Z10300504 Keywords : regularization networks * kernel functions * genetic algorithms Subject RIV: IN - Informatics, Computer Science
Architecture and Applications of Functional Three-Dimensional Graphene Networks
DEFF Research Database (Denmark)
Dey, Ramendra Sundar; Chi, Qijin
2015-01-01
building blocksfor the bottom-up architecture of various graphene based nanomaterials. Th eassembly of functionalized GNS into three-dimensional (3D) porous graphenenetworks represents a novel approach. Resulting 3D porous graphene materialsposses unique physicochemical properties such as large surface...... areas, goodconductivity and mechanical strength, high thermal stability and desirable fl exibility,which altogether makes this new type of porous materials be highly attractivefor a wide range of applications. In this chapter, we will cover some crucialaspects of porous graphene networked materials...
Börner, Stefan; Ragg, Hermann
2008-05-31
The mutually exclusive use of alternative reactive site loop (RSL) cassettes due to alternative splicing of serpin (serine protease inhibitor) gene transcripts is a widespread strategy to create target-selective protease inhibitors in the animal kingdom. Since molecular basis and evolution of serpin RSL cassette exon amplification and diversification are unexplored, the exon-intron organization of the serpin gene spn4 from 12 species of the genus Drosophila was studied. The analysis of the gene structures shows that both number and target enzyme specificities of Spn4 RSL cassettes are highly variable in fruit flies and includes inhibitor variants with novel antiproteolytic activities in some species, indicating that RSL diversity is the result of adaptive evolution. Comparative genomics suggests that interallelic gene conversion and/or recombination events contribute to RSL cassette exon amplification. Due to an intron that is located at the most suitable position within the RSL region, multiple inhibitors can be formed in an economic manner that are both efficient and target-selective, allowing fruit flies to control an astonishing variety of proteases with different cleavage chemistry and evolutionary ancestry. PMID:18395367
Directory of Open Access Journals (Sweden)
Marek Mutwil
2014-08-01
Full Text Available The analysis of gene expression data has shown that transcriptionally coordinated (co-expressed genes are often functionally related, enabling scientists to use expression data in gene function prediction. This Focused Review discusses our original paper (Large-scale co-expression approach to dissect secondary cell wall formation across plant species, Frontiers in Plant Science 2:23. In this paper we applied cross-species analysis to co-expression networks of genes involved in cellulose biosynthesis. We show that the co-expression networks from different species are highly similar, indicating that whole biological pathways are conserved across species. This finding has two important implications. First, the analysis can transfer gene function annotation from well-studied plants, such as Arabidopsis, to other, uncharacterized plant species. As the analysis finds genes that have similar sequence and similar expression pattern across different organisms, functionally equivalent genes can be identified. Second, since co-expression analyses are often noisy, a comparative analysis should have higher performance, as parts of co-expression networks that are conserved are more likely to be functionally relevant. In this Focused Review, we outline the comparative analysis done in the original paper and comment on the recent advances and approaches that allow comparative analyses of co-function networks. We hypothesize that, in comparison to simple co-expression analysis, comparative analysis would yield more accurate gene function predictions. Finally, by combining comparative analysis with genomic information of green plants, we propose a possible composition of cellulose biosynthesis machinery during earlier stages of plant evolution.
The neural basis of mark making: a functional MRI study of drawing.
Directory of Open Access Journals (Sweden)
Ye Yuan
Full Text Available Compared to most other forms of visually-guided motor activity, drawing is unique in that it "leaves a trail behind" in the form of the emanating image. We took advantage of an MRI-compatible drawing tablet in order to examine both the motor production and perceptual emanation of images. Subjects participated in a series of mark making tasks in which they were cued to draw geometric patterns on the tablet's surface. The critical comparison was between when visual feedback was displayed (image generation versus when it was not (no image generation. This contrast revealed an occipito-parietal stream involved in motion-based perception of the emerging image, including areas V5/MT+, LO, V3A, and the posterior part of the intraparietal sulcus. Interestingly, when subjects passively viewed animations of visual patterns emerging on the projected surface, all of the sensorimotor network involved in drawing was strongly activated, with the exception of the primary motor cortex. These results argue that the origin of the human capacity to draw and write involves not only motor skills for tool use but also motor-sensory links between drawing movements and the visual images that emanate from them in real time.
The Neural Basis of Mark Making: A Functional MRI Study of Drawing
Yuan, Ye; Brown, Steven
2014-01-01
Compared to most other forms of visually-guided motor activity, drawing is unique in that it “leaves a trail behind” in the form of the emanating image. We took advantage of an MRI-compatible drawing tablet in order to examine both the motor production and perceptual emanation of images. Subjects participated in a series of mark making tasks in which they were cued to draw geometric patterns on the tablet's surface. The critical comparison was between when visual feedback was displayed (image generation) versus when it was not (no image generation). This contrast revealed an occipito-parietal stream involved in motion-based perception of the emerging image, including areas V5/MT+, LO, V3A, and the posterior part of the intraparietal sulcus. Interestingly, when subjects passively viewed animations of visual patterns emerging on the projected surface, all of the sensorimotor network involved in drawing was strongly activated, with the exception of the primary motor cortex. These results argue that the origin of the human capacity to draw and write involves not only motor skills for tool use but also motor-sensory links between drawing movements and the visual images that emanate from them in real time. PMID:25271440
Rauno Lindholm, Daniel; Boisen Devantier, Lykke; Nyborg, Karoline Lykke; Høgsbro, Andreas; de Fries, Louise Skovlund
2016-01-01
The purpose of this project was to examine what influencing factor that has had an impact on the presumed increasement of the use of networking among academics on the labour market and how it is expressed. On the basis of the influence from globalization on the labour market it can be concluded that the globalization has transformed the labour market into a market based on the organization of networks. In this new organization there is a greater emphasis on employees having social...
Study of Robustness in Functionally Identical Coupled Networks against Cascading Failures.
Wang, Xingyuan; Cao, Jianye; Qin, Xiaomeng
2016-01-01
Based on coupled networks, taking node load, capacity and load redistribution between two networks into consideration, we propose functionally identical coupled networks, which consist of two networks connected by interlinks. Functionally identical coupled networks are derived from the power grid of the United States, which consists of many independent grids. Many power transmission lines are planned to interconnect those grids and, therefore, the study of the robustness of functionally identical coupled networks becomes important. In this paper, we find that functionally identical coupled networks are more robust than single networks under random attack. By studying the effect of the broadness and average degree of the degree distribution on the robustness of the network, we find that a broader degree distribution and a higher average degree increase the robustness of functionally identical coupled networks under random failure. And SF-SF (two coupled scale-free networks) is more robust than ER-ER (two coupled random networks) or SF-ER (coupled random network and scale-free network). This research is useful to construct robust functionally identical coupled networks such as two cooperative power grids. PMID:27494715
Directory of Open Access Journals (Sweden)
Kunjin Luo
2009-02-01
Full Text Available In order to research on the stiff function of network media, this paper selects a special group-male teachers as research objects, analyzes comprehensively from the perspective of communication science, summarizes how the image of this group is set up in network media and what kind of communication effect is generated, and makes suggestions, which are expected to be beneficial for network media to exert effective function in public opinion supervision.
Cho Kwang-Hyun; Choi Sun; Kwon Yung-Keun
2007-01-01
Abstract Background A number of studies on biological networks have been carried out to unravel the topological characteristics that can explain the functional importance of network nodes. For instance, connectivity, clustering coefficient, and shortest path length were previously proposed for this purpose. However, there is still a pressing need to investigate another topological measure that can better describe the functional importance of network nodes. In this respect, we considered a fee...
Swain, James E.; Lorberbaum, Jeffrey P.; Kose, Samet; Strathearn, Lane
2007-01-01
Parenting behavior critically shapes human infants’ current and future behavior. The parent–infant relationship provides infants with their first social experiences, forming templates of what they can expect from others and how to best meet others’ expectations. In this review, we focus on the neurobiology of parenting behavior, including our own functional magnetic resonance imaging (fMRI) brain imaging experiments of parents. We begin with a discussion of background, perspectives and caveat...
Gallay, Marc N.; Jeanmonod, Daniel; Liu, Jian; Morel, Anne
2008-01-01
Anatomical knowledge of the structures to be targeted and of the circuitry involved is crucial in stereotactic functional neurosurgery. The present study was undertaken in the context of surgical treatment of motor disorders such as essential tremor (ET) and Parkinson’s disease (PD) to precisely determine the course and three-dimensional stereotactic localisation of the cerebellothalamic and pallidothalamic tracts in the human brain. The course of the fibre tracts to the thalamus was traced i...
DEFF Research Database (Denmark)
Skulason, Egill; Tripkovic, Vladimir; Björketun, Mårten;
2010-01-01
Density functional theory calculations have been performed for the three elementary steps―Tafel, Heyrovsky, and Volmer―involved in the hydrogen oxidation reaction (HOR) and its reverse, the hydrogen evolution reaction (HER). For the Pt(111) surface a detailed model consisting of a negatively char...... detailed kinetic model based entirely on the DFT reactions and show that the exchange current follows a volcano curve when plotted against the H adsorption free energy in excellent agreement with experimental data....
Energy Technology Data Exchange (ETDEWEB)
Jacques Hugo; John Forester; David Gertman; Jeffrey Joe; Heather Medema; Julius Persensky; April Whaley
2013-04-01
This report presents preliminary research results from the investigation in to the development of new models and guidance for concepts of operations (ConOps) in advanced small modular reactor (aSMR) designs. In support of this objective, three important research areas were included: operating principles of multi-modular plants, functional allocation models and strategies that would affect the development of new, non-traditional concept of operations, and the requiremetns for human performance, based upon work domain analysis and current regulatory requirements. As part of the approach for this report, we outline potential functions, including the theoretical and operational foundations for the development of a new functional allocation model and the identification of specific regulatory requirements that will influence the development of future concept of operations. The report also highlights changes in research strategy prompted by confirmationof the importance of applying the work domain analysis methodology to a reference aSMR design. It is described how this methodology will enrich the findings from this phase of the project in the subsequent phases and help in identification of metrics and focused studies for the determination of human performance criteria that can be used to support the design process.
Institute of Scientific and Technical Information of China (English)
ZHANG Min; ZHU Jing; GUO Zheng; LI Xia; YANG Da; WANG Lei; RAO Shaoqi
2006-01-01
Identifying disease-relevant genes and functional modules, based on gene expression profiles and gene functional knowledge, is of high importance for studying disease mechanisms and subtyping disease phenotypes. Using gene categories of biological process and cellular component in Gene Ontology, we propose an approach to selecting functional modules enriched with differentially expressed genes, and identifying the feature functional modules of high disease discriminating abilities. Using the differentially expressed genes in each feature module as the feature genes, we reveal the relevance of the modules to the studied diseases. Using three datasets for prostate cancer, gastric cancer, and leukemia, we have demonstrated that the proposed modular approach is of high power in identifying functionally integrated feature gene subsets that are highly relevant to the disease mechanisms. Our analysis has also shown that the critical disease-relevant genes might be better recognized from the gene regulation network, which is constructed using the characterized functional modules, giving important clues to the concerted mechanisms of the modules responding to complex disease states. In addition, the proposed approach to selecting the disease-relevant genes by jointly considering the gene functional knowledge suggests a new way for precisely classifying disease samples with clear biological interpretations, which is critical for the clinical diagnosis and the elucidation of the pathogenic basis of complex diseases.
The brain's functional network architecture reveals human motives.
Hein, Grit; Morishima, Yosuke; Leiberg, Susanne; Sul, Sunhae; Fehr, Ernst
2016-03-01
Goal-directed human behaviors are driven by motives. Motives are, however, purely mental constructs that are not directly observable. Here, we show that the brain's functional network architecture captures information that predicts different motives behind the same altruistic act with high accuracy. In contrast, mere activity in these regions contains no information about motives. Empathy-based altruism is primarily characterized by a positive connectivity from the anterior cingulate cortex (ACC) to the anterior insula (AI), whereas reciprocity-based altruism additionally invokes strong positive connectivity from the AI to the ACC and even stronger positive connectivity from the AI to the ventral striatum. Moreover, predominantly selfish individuals show distinct functional architectures compared to altruists, and they only increase altruistic behavior in response to empathy inductions, but not reciprocity inductions. PMID:26941317
Intrinsic Functional-Connectivity Networks for Diagnosis: Just Beautiful Pictures?
Moeller, James R.
2011-01-01
Abstract Resting-state functional connectivity has become a topic of enormous interest in the Neuroscience community in the last decade. Because resting-state data (1) harbor important information that often is diagnostically relevant and (2) are easy to acquire, there has been a rapid increase in the development of a variety of network analytic techniques for diagnostic applications, stimulating methodological research in general. While we are among those who welcome the increased interest in the resting state and multivariate analytic tools, we would like to draw attention to some entrenched practices that undermine the scientific quality of diagnostic functional-connectivity research, but whose correction is relatively easy to accomplish. With the current commentary we also hope to benefit the field at large and contribute to a healthy debate about research goals and best practices. PMID:22433005
Energy Technology Data Exchange (ETDEWEB)
Huang, H.; Chen, M.; Bruno, P.; Lam, R.; Robinson, E.; Gruen, D.; Ho, D.; Materials Science Division; Northwestern Univ.
2009-01-01
The fabrication of biologically amenable interfaces in medicine bridges translational technologies with their surrounding biological environment. Functionalized nanomaterials catalyze this coalescence through the creation of biomimetic and active substrates upon which a spectrum of therapeutic elements can be delivered to adherent cells to address biomolecular processes in cancer, inflammation, etc. Here, we demonstrate the robust functionalization of ultrananocrystalline diamond (UNCD) with type I collagen and dexamethasone (Dex), an anti-inflammatory drug, to fabricate a hybrid therapeutically active substrate for localized drug delivery. UNCD oxidation coupled with a pH-mediated collagen adsorption process generated a comprehensive interface between the two materials, and subsequent Dex integration, activity, and elution were confirmed through inflammatory gene expression assays. These studies confer a translational relevance to the biofunctionalized UNCD in its role as an active therapeutic network for potent regulation of cellular activity toward applications in nanomedicine.
Functional networks in emotional moral and nonmoral social judgments.
Moll, Jorge; de Oliveira-Souza, Ricardo; Bramati, Ivanei E; Grafman, Jordan
2002-07-01
Reading daily newspaper articles often evokes opinions and social judgments about the characters and stories. Social and moral judgments rely on the proper functioning of neural circuits concerned with complex cognitive and emotional processes. To examine whether dissociable neural systems mediate emotionally charged moral and nonmoral social judgments, we used a visual sentence verification task in conjunction with functional magnetic resonance imaging (fMRI). We found that a network comprising the medial orbitofrontal cortex, the temporal pole and the superior temporal sulcus of the left hemisphere was specifically activated by moral judgments. In contrast, judgment of emotionally evocative, but non-moral statements activated the left amygdala, lingual gyri, and the lateral orbital gyrus. These findings provide new evidence that the orbitofrontal cortex has dedicated subregions specialized in processing specific forms of social behavior. PMID:12169253
Brandenburg, Jan Gerit; Alessio, Maristella; Civalleri, Bartolomeo; Peintinger, Michael F; Bredow, Thomas; Grimme, Stefan
2013-09-26
We extend the previously developed geometrical correction for the inter- and intramolecular basis set superposition error (gCP) to periodic density functional theory (DFT) calculations. We report gCP results compared to those from the standard Boys-Bernardi counterpoise correction scheme and large basis set calculations. The applicability of the method to molecular crystals as the main target is tested for the benchmark set X23. It consists of 23 noncovalently bound crystals as introduced by Johnson et al. (J. Chem. Phys. 2012, 137, 054103) and refined by Tkatchenko et al. (J. Chem. Phys. 2013, 139, 024705). In order to accurately describe long-range electron correlation effects, we use the standard atom-pairwise dispersion correction scheme DFT-D3. We show that a combination of DFT energies with small atom-centered basis sets, the D3 dispersion correction, and the gCP correction can accurately describe van der Waals and hydrogen-bonded crystals. Mean absolute deviations of the X23 sublimation energies can be reduced by more than 70% and 80% for the standard functionals PBE and B3LYP, respectively, to small residual mean absolute deviations of about 2 kcal/mol (corresponding to 13% of the average sublimation energy). As a further test, we compute the interlayer interaction of graphite for varying distances and obtain a good equilibrium distance and interaction energy of 6.75 Å and -43.0 meV/atom at the PBE-D3-gCP/SVP level. We fit the gCP scheme for a recently developed pob-TZVP solid-state basis set and obtain reasonable results for the X23 benchmark set and the potential energy curve for water adsorption on a nickel (110) surface. PMID:23947824
Kozlova, I. N.
2016-04-01
We propose a model of functional parameters drift for electronic devices, allowing predicting their lifetime. The method of model parameters estimation is developed. The developed model allows optimizing the accelerated tests modes, taking into account the complex impact of stress factors. The results are applicable for modern electronic devices with a failure rate less than 1 FIT. The results are applicable if the physical and chemical processes leading to electronic devices degradation have an activation mechanism; the activation process is due to the temperature.
Extracting functionally feedforward networks from a population of spiking neurons
Directory of Open Access Journals (Sweden)
Joe Tauskela
2012-10-01
Full Text Available Neuronal avalanches are a ubiquitous form of activity characterized by spontaneous bursts whose statistics follow a power-law. Recent theoretical models capture neuronal avalanches by assuming the presence of functionally feedforward connections (FFCs, whereby avalanches are generated by a feedforward chain of activation that persists despite being embedded in a massively recurrent circuit. However, it is unclear to what extent networks of living neurons that exhibit neuronal avalanches rely on FFCs. Here, we employed a computational approach to reconstruct the functional connectivity of cultured cortical neurons plated on multielectrode arrays and investigated whether drug-induced alterations in avalanche dynamics are accompanied by changes in FFCs. We begin by extracting a functional network of directed links between pairs of neurons, and then evaluate the strength of FFCs using Schur decomposition. In a first step, we show that, in simulations of spiking neurons, the strength of FFCs is monotonically related to the proportion of feedforward propagation. Next, we estimated the FFCs of spontaneously active cortical cultures in the presence of either a control medium, a GABAA receptor antagonist (PTX, or an AMPA receptor antagonist combined with NMDA receptor antagonist (APV/DNQX. Avalanche sizes in these cultures followed a shallower power-law under PTX (due to the prominence of larger avalanches and a steeper power-law under APV/DNQX (due to avalanches recruiting fewer neurons relative to control cultures. The strength of FFCs increased following application of PTX, consistent with an amplification of feedforward activity during avalanches. Conversely, FFCs decreased after application of APV/DNQX, consistent with fading feedforward activation. The observed alterations in FFCs provide experimental support for recent theoretical work linking power-law avalanches to the feedforward organization of functional connections in local neuronal circuits.