WorldWideScience

Sample records for barcode scanning system

  1. System Design Considerations In Bar-Code Laser Scanning

    Science.gov (United States)

    Barkan, Eric; Swartz, Jerome

    1984-08-01

    The unified transfer function approach to the design of laser barcode scanner signal acquisition hardware is considered. The treatment of seemingly disparate system areas such as the optical train, the scanning spot, the electrical filter circuits, the effects of noise, and printing errors is presented using linear systems theory. Such important issues as determination of depth of modulation, filter specification, tolerancing of optical components, and optimi-zation of system performance in the presence of noise are discussed. The concept of effective spot size to allow for impact of optical system and analog processing circuitry upon depth of modulation is introduced. Considerations are limited primarily to Gaussian spot profiles, but also apply to more general cases. Attention is paid to realistic bar-code symbol models and to implications with respect to printing tolerances.

  2. Usability of a barcode scanning system as a means of data entry on a PDA for self-report health outcome questionnaires

    DEFF Research Database (Denmark)

    Boissy, Patrice; Jacobs, Karen; Roy, Serge H

    2006-01-01

    with a text-to-speech synthesizer to collect data electronically from self-report health outcome questionnaires. METHODS: Usability of the system was tested on a sample of 24 community-living older adults (7 men, 17 women) ranging in age from 63 to 93 years. After receiving a brief demonstration on the use...... of errors). RESULTS: Overall, participants found barcode scanning easy to learn, easy to use, and pleasant. Participants were marginally faster in completing the 16 survey questions when using pen entry (20/24 participants). The mean response time with the barcode scanner was 31 seconds longer than...

  3. The integration of barcode scanning technology into Canadian public health immunization settings.

    Science.gov (United States)

    Pereira, Jennifer A; Quach, Susan; Hamid, Jemila S; Quan, Sherman D; Diniz, Amanda Jane; Van Exan, Robert; Malawski, Jeffrey; Finkelstein, Michael; Samanani, Salim; Kwong, Jeffrey C

    2014-05-13

    As part of a series of feasibility studies following the development of Canadian vaccine barcode standards, we compared barcode scanning with manual methods for entering vaccine data into electronic client immunization records in public health settings. Two software vendors incorporated barcode scanning functionality into their systems so that Algoma Public Health (APH) in Ontario and four First Nations (FN) communities in Alberta could participate in our study. We compared the recording of client immunization data (vaccine name, lot number, expiry date) using barcode scanning of vaccine vials vs. pre-existing methods of entering vaccine information into the systems. We employed time and motion methodology to evaluate time required for data recording, record audits to assess data quality, and qualitative analysis of immunization staff interviews to gauge user perceptions. We conducted both studies between July and November 2012, with 628 (282 barcoded) vials processed for the APH study, and 749 (408 barcoded) vials for the study in FN communities. Barcode scanning led to significantly fewer immunization record errors than using drop-down menus (APH study: 0% vs. 1.7%; p=0.04) or typing in vaccine data (FN study: 0% vs. 5.6%; pnurses were interviewed; all noted improved record accuracy with scanning, but the majority felt that a more sensitive scanner was needed to reduce the occasional failures to read the 2D barcodes on some vaccines. Entering vaccine data into immunization records through barcode scanning led to improved data quality, and was generally well received. Further work is needed to improve barcode readability, particularly for unit-dose vials. Copyright © 2013 The Authors. Published by Elsevier Ltd.. All rights reserved.

  4. Experience and Compliance With Scanning Vaccines' Two-Dimensional Barcodes to Record Data.

    Science.gov (United States)

    Evanson, Heather V; Rodgers, Loren; Reed, Jenica; Daily, Ashley; Gerlach, Kenneth; Greene, Michael; Koeppl, Patrick; Cox, Regina; Williams, Warren

    2018-01-01

    Automated population of data into health information system fields offers the potential to increase efficiencies and save time. Increasingly, as two-dimensional barcoded vaccine products and barcode scanning technology become more widely available, manual recording of vaccine data can be reduced. This evaluation explores how often two-dimensional barcodes on vaccine vials and syringes were scanned and the perceived benefits and challenges reported by vaccine providers. Eighty-two facilities that administer vaccines completed the evaluation. Twenty-seven of those facilities provided records from vaccines administered between July 2014 and January 2015. Among the 63 179 two-dimensional barcoded vaccine administrations recorded, 12 408 (19%) were scanned. We received 116 user surveys from 63 facilities; using content analysis, we identified perceived benefits of scanning, workflow challenges, scanning challenges, and other challenges. The findings of this evaluation can guide health information system developers, vaccine manufacturers, and vaccine providers on how to remove potential barriers to using two-dimensional barcode scanning.

  5. ISBN and QR Barcode Scanning Mobile App for Libraries

    Directory of Open Access Journals (Sweden)

    Graham McCarthy

    2011-04-01

    Full Text Available This article outlines the development of a mobile application for the Ryerson University Library. The application provides for ISBN barcode scanning that results in a lookup of library copies and services for the book scanned, as well as QR code scanning. Two versions of the application were developed, one for iOS and one for Android. The article includes some details on the free packages used for barcode scanning functionality. Source code for the Ryerson iOS and Android applications are freely available, and instructions are provided on customizing the Ryerson application for use in other library environments. Some statistics on the number of downloads of the Ryerson mobile app by users are included.

  6. Addressing challenges in bar-code scanning of large-volume infusion bags.

    Science.gov (United States)

    Raman, Kirthana; Heelon, Mark; Kerr, Gary; Higgins, Thomas L

    2011-08-01

    A hospital pharmacy's efforts to identify and address challenges with bedside scanning of bar codes on large-volume parenteral (LVP) infusion bags are described. Bar-code-assisted medication administration (BCMA) has been shown to reduce medication errors and improve patient safety. After the pilot implementation of a BCMA system and point-of-care scanning procedures at a medical center's intensive care unit, it was noted that nurses' attempted bedside scans of certain LVP bags for product identification purposes often were not successful. An investigation and root-cause analysis, including observation of nurses' scanning technique by a multidisciplinary team, determined that the scanning failures stemmed from the placement of two bar-code imprints-one with the product identification code and another, larger imprint with the expiration date and lot number-adjacently on the LVP bags. The nursing staff was educated on a modified scanning technique, which resulted in significantly improved success rates in the scanning of the most commonly used LVP bags. Representatives of the LVP bag manufacturer met with hospital staff to discuss the problem and corrective measures. As part of a subsequent infusion bag redesign, the manufacturer discontinued the use of the bar-code imprint implicated in the scanning failures. Failures in scanning LVP bags were traced to problematic placement of bar-code imprints on the bags. Interdisciplinary collaboration, consultation with the bag manufacturer, and education of the nursing and pharmacy staff resulted in a reduction in scanning failures and the manufacturer's removal of one of the bar codes from its LVP bags.

  7. A laboratory information management system for DNA barcoding workflows

    NARCIS (Netherlands)

    Vu, D.; Eberhardt, U.; Szöke, S.; Groenewald, M.; Robert, V.

    2012-01-01

    This paper presents a laboratory information management system for DNA sequences (LIMS) created and based on the needs of a DNA barcoding project at the CBS-KNAW Fungal Biodiversity Centre (Utrecht, the Netherlands). DNA barcoding is a global initiative for species identification through simple DNA

  8. A laboratory information management system for DNA barcoding workflows.

    Science.gov (United States)

    Vu, Thuy Duong; Eberhardt, Ursula; Szöke, Szániszló; Groenewald, Marizeth; Robert, Vincent

    2012-07-01

    This paper presents a laboratory information management system for DNA sequences (LIMS) created and based on the needs of a DNA barcoding project at the CBS-KNAW Fungal Biodiversity Centre (Utrecht, the Netherlands). DNA barcoding is a global initiative for species identification through simple DNA sequence markers. We aim at generating barcode data for all strains (or specimens) included in the collection (currently ca. 80 k). The LIMS has been developed to better manage large amounts of sequence data and to keep track of the whole experimental procedure. The system has allowed us to classify strains more efficiently as the quality of sequence data has improved, and as a result, up-to-date taxonomic names have been given to strains and more accurate correlation analyses have been carried out.

  9. Quality Traceability System of Traditional Chinese Medicine Based on Two Dimensional Barcode Using Mobile Intelligent Technology.

    Directory of Open Access Journals (Sweden)

    Yong Cai

    Full Text Available Currently, the chemical fingerprint comparison and analysis is mainly based on professional equipment and software, it's expensive and inconvenient. This study aims to integrate QR (Quick Response code with quality data and mobile intelligent technology to develop a convenient query terminal for tracing quality in the whole industrial chain of TCM (traditional Chinese medicine. Three herbal medicines were randomly selected and their chemical two-dimensional barcode (2D barcodes fingerprints were constructed. Smartphone application (APP based on Android system was developed to read initial data of 2D chemical barcodes, and compared multiple fingerprints from different batches of same species or different species. It was demonstrated that there were no significant differences between original and scanned TCM chemical fingerprints. Meanwhile, different TCM chemical fingerprint QR codes could be rendered in the same coordinate and showed the differences very intuitively. To be able to distinguish the variations of chemical fingerprint more directly, linear interpolation angle cosine similarity algorithm (LIACSA was proposed to get similarity ratio. This study showed that QR codes can be used as an effective information carrier to transfer quality data. Smartphone application can rapidly read quality information in QR codes and convert data into TCM chemical fingerprints.

  10. Feasibility and Limitations of Vaccine Two-Dimensional Barcoding Using Mobile Devices.

    Science.gov (United States)

    Bell, Cameron; Guerinet, Julien; Atkinson, Katherine M; Wilson, Kumanan

    2016-06-23

    Two-dimensional (2D) barcoding has the potential to enhance documentation of vaccine encounters at the point of care. However, this is currently limited to environments equipped with dedicated barcode scanners and compatible record systems. Mobile devices may present a cost-effective alternative to leverage 2D vaccine vial barcodes and improve vaccine product-specific information residing in digital health records. Mobile devices have the potential to capture product-specific information from 2D vaccine vial barcodes. We sought to examine the feasibility, performance, and potential limitations of scanning 2D barcodes on vaccine vials using 4 different mobile phones. A unique barcode scanning app was developed for Android and iOS operating systems. The impact of 4 variables on the scan success rate, data accuracy, and time to scan were examined: barcode size, curvature, fading, and ambient lighting conditions. Two experimenters performed 4 trials 10 times each, amounting to a total of 2160 barcode scan attempts. Of the 1832 successful scans performed in this evaluation, zero produced incorrect data. Five-millimeter barcodes were the slowest to scan, although only by 0.5 seconds on average. Barcodes with up to 50% fading had a 100% success rate, but success rate deteriorated beyond 60% fading. Curved barcodes took longer to scan compared with flat, but success rate deterioration was only observed at a vial diameter of 10 mm. Light conditions did not affect success rate or scan time between 500 lux and 20 lux. Conditions below 20 lux impeded the device's ability to scan successfully. Variability in scan time was observed across devices in all trials performed. 2D vaccine barcoding is possible using mobile devices and is successful under the majority of conditions examined. Manufacturers utilizing 2D barcodes should take into consideration the impact of factors that limit scan success rates. Future studies should evaluate the effect of mobile barcoding on workflow and

  11. Barcode server: a visualization-based genome analysis system.

    Directory of Open Access Journals (Sweden)

    Fenglou Mao

    Full Text Available We have previously developed a computational method for representing a genome as a barcode image, which makes various genomic features visually apparent. We have demonstrated that this visual capability has made some challenging genome analysis problems relatively easy to solve. We have applied this capability to a number of challenging problems, including (a identification of horizontally transferred genes, (b identification of genomic islands with special properties and (c binning of metagenomic sequences, and achieved highly encouraging results. These application results inspired us to develop this barcode-based genome analysis server for public service, which supports the following capabilities: (a calculation of the k-mer based barcode image for a provided DNA sequence; (b detection of sequence fragments in a given genome with distinct barcodes from those of the majority of the genome, (c clustering of provided DNA sequences into groups having similar barcodes; and (d homology-based search using Blast against a genome database for any selected genomic regions deemed to have interesting barcodes. The barcode server provides a job management capability, allowing processing of a large number of analysis jobs for barcode-based comparative genome analyses. The barcode server is accessible at http://csbl1.bmb.uga.edu/Barcode.

  12. Barcode based localization system in indoor environment

    Directory of Open Access Journals (Sweden)

    Ľubica Ilkovičová

    2014-12-01

    Full Text Available Nowadays, in the era of intelligent buildings, there is a need to create indoornavigation systems, what is steadily a challenge. QR (Quick Response codesprovide accurate localization also in indoor environment, where other navigationtechniques (e.g. GPS are not available. The paper deals with the issues of posi-tioning using QR codes, solved at the Department of Surveying, Faculty of CivilEngineering SUT in Bratislava. Operating principle of QR codes, description ofthe application for positioning in indoor environment based on OS Android forsmartphones are described.

  13. A Ranking System for Reference Libraries of DNA Barcodes: Application to Marine Fish Species from Portugal

    Science.gov (United States)

    Costa, Filipe O.; Landi, Monica; Martins, Rogelia; Costa, Maria H.; Costa, Maria E.; Carneiro, Miguel; Alves, Maria J.; Steinke, Dirk; Carvalho, Gary R.

    2012-01-01

    Background The increasing availability of reference libraries of DNA barcodes (RLDB) offers the opportunity to the screen the level of consistency in DNA barcode data among libraries, in order to detect possible disagreements generated from taxonomic uncertainty or operational shortcomings. We propose a ranking system to attribute a confidence level to species identifications associated with DNA barcode records from a RLDB. Here we apply the proposed ranking system to a newly generated RLDB for marine fish of Portugal. Methodology/Principal Findings Specimens (n = 659) representing 102 marine fish species were collected along the continental shelf of Portugal, morphologically identified and archived in a museum collection. Samples were sequenced at the barcode region of the cytochrome oxidase subunit I gene (COI-5P). Resultant DNA barcodes had average intra-specific and inter-specific Kimura-2-parameter distances (0.32% and 8.84%, respectively) within the range usually observed for marine fishes. All specimens were ranked in five different levels (A–E), according to the reliability of the match between their species identification and the respective diagnostic DNA barcodes. Grades A to E were attributed upon submission of individual specimen sequences to BOLD-IDS and inspection of the clustering pattern in the NJ tree generated. Overall, our study resulted in 73.5% of unambiguous species IDs (grade A), 7.8% taxonomically congruent barcode clusters within our dataset, but awaiting external confirmation (grade B), and 18.7% of species identifications with lower levels of reliability (grades C/E). Conclusion/Significance We highlight the importance of implementing a system to rank barcode records in RLDB, in order to flag taxa in need of taxonomic revision, or reduce ambiguities of discordant data. With increasing DNA barcode records publicly available, this cross-validation system would provide a metric of relative accuracy of barcodes, while enabling the

  14. A bar-code reader for an alpha-beta automatic counting system - FAG

    International Nuclear Information System (INIS)

    Levinson, S.; Shemesh, Y.; Ankry, N.; Assido, H.; German, U.; Peled, O.

    1996-01-01

    A bar-code laser system for sample number reading was integrated into the FAG Alpha-Beta automatic counting system. The sample identification by means of an attached bar-code label enables unmistakable and reliable attribution of results to the counted sample. Installation of the bar-code reader system required several modifications: Mechanical changes in the automatic sample changer, design and production of new sample holders, modification of the sample planchettes, changes in the electronic system, update of the operating software of the system (authors)

  15. Beam scanning system

    International Nuclear Information System (INIS)

    Enge, H.A.

    1977-01-01

    A system for deflecting a beam of particles having different momenta, preferably through a 90 0 angle, so as to cause the beam to impinge upon a moving target and to scan across the target is described. The system includes a means responsive to a beam from a suitable source for causing the beam to periodically scan in a scanning plane and further means for deflecting the periodically scanned beam through the desired angle in a deflection plane so that the deflected beam impinges on the target. Means are included in the system for reducing the momentum dispersion at the target in both the deflection and the scanning planes and for spatially focussing the beam so as to produce a desired beam diameter at the target

  16. Unicolor woven barcode; Unicolor nuno barcode

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    2000-03-01

    Development was made on a woven barcode system of single and inconspicuous color of thermal light emission infrared ray detecting system. This is a new barcode system to detect characteristic infrared ray of 4.5 {mu}m from polyacrylonitrile fiber constituting the barcode when it is heated to 70 degrees C. Codes can normally be read in 0.7 second. Differing from transparent barcode made with fluorescent color, the new barcode can be made into a thread, which resulted in realizing a woven barcode. This woven barcode could be applied in different and new ways utilizing its inconspicuousness, in addition to applicability to simplification of control in uniform rental and linen supply operations subject to repeated washing. (translated by NEDO)

  17. Dialogue scanning measuring systems

    International Nuclear Information System (INIS)

    Borodyuk, V.P.; Shkundenkov, V.N.

    1985-01-01

    The main developments of scanning measuring systems intended for mass precision processsing of films in nuclear physics problems and in related fields are reviewed. A special attention is paid to the problem of creation of dialogue systems which permit to simlify the development of control computer software

  18. Development of Attendance Database System Using Bar-coded Student Card

    Directory of Open Access Journals (Sweden)

    Abdul Fadlil

    2008-04-01

    Full Text Available The calculation of the level of attendance is very important, because one indicator of a person's credibility can be seen from the level of attendance. For example, at a university, data about the level of attendance of a student in a lecture is very important as one of components in the assessment. The manual presence system is considered less effective. This research presents the draft of presence system using bar codes (barcodes as input data representing the attendance. The presence system is supported by three main components, those are a bar code found on the student card (KTM, a CCD barcode scanner series and a CD-108E computer. Management of attendance list using this system allows for optimization of functions of KTM. The presence system has been tested with several KTM through a variety of distances and positions of the barcode scanner barcode. The test results is obtained at ideal position for reading a barcode when a barcode scanner is at 2 cm from the object with 90 degree. At this position the level of accuracy reach 100%.

  19. Radiation scanning system

    International Nuclear Information System (INIS)

    1979-01-01

    In the radiation scanning system the radiation emitted from an image field is scanned by a field of radiosensitive detector elements, and the signals transmitted are used to control the video input of a scanning-pattern image display unit. By the variations of the transmitting properties of the detector elements and the electronic equipment spurious patterns are produced on the projected picture. In order to prevent this there is provided for a compensating circuit and a comparator by means of which the variations of the transmitting properties are compensated. It works synchronous by together with a multipler device and carries out a measurement of the statistic moment of the voltage of each channel. The compensating device may be designed as an open or closed control loop. (orig.) [de

  20. IMEF gamma scanning system

    Energy Technology Data Exchange (ETDEWEB)

    Baek, Sang Yeol; Park, Dae Kyu; Ahn, Sang Bok; Ju, Yong Sun; Jeon, Yong Bum

    1997-06-01

    The gamma scanning system which is installed in IMEF is the equipment obtaining the gamma ray spectrum from irradiated fuels. This equipment could afford the useful data relating spent fuels like as burn-up measurements. We describe the specifications of the equipment and its accessories, and also described its operation procedure so that an operator can use this report as the operation procedure. (author). 1 tab., 11 figs., 11 refs.

  1. Genetic patterns in European geometrid moths revealed by the Barcode Index Number (BIN system.

    Directory of Open Access Journals (Sweden)

    Axel Hausmann

    Full Text Available BACKGROUND: The geometrid moths of Europe are one of the best investigated insect groups in traditional taxonomy making them an ideal model group to test the accuracy of the Barcode Index Number (BIN system of BOLD (Barcode of Life Datasystems, a method that supports automated, rapid species delineation and identification. METHODOLOGY/PRINCIPAL FINDINGS: This study provides a DNA barcode library for 219 of the 249 European geometrid moth species (88% in five selected subfamilies. The data set includes COI sequences for 2130 specimens. Most species (93% were found to possess diagnostic barcode sequences at the European level while only three species pairs (3% were genetically indistinguishable in areas of sympatry. As a consequence, 97% of the European species we examined were unequivocally discriminated by barcodes within their natural areas of distribution. We found a 1:1 correspondence between BINs and traditionally recognized species for 67% of these species. Another 17% of the species (15 pairs, three triads shared BINs, while specimens from the remaining species (18% were divided among two or more BINs. Five of these species are mixtures, both sharing and splitting BINs. For 82% of the species with two or more BINs, the genetic splits involved allopatric populations, many of which have previously been hypothesized to represent distinct species or subspecies. CONCLUSIONS/SIGNIFICANCE: This study confirms the effectiveness of DNA barcoding as a tool for species identification and illustrates the potential of the BIN system to characterize formal genetic units independently of an existing classification. This suggests the system can be used to efficiently assess the biodiversity of large, poorly known assemblages of organisms. For the moths examined in this study, cases of discordance between traditionally recognized species and BINs arose from several causes including overlooked species, synonymy, and cases where DNA barcodes revealed

  2. Pitfalls of establishing DNA barcoding systems in protists: the cryptophyceae as a test case.

    Directory of Open Access Journals (Sweden)

    Kerstin Hoef-Emden

    Full Text Available A DNA barcode is a preferrably short and highly variable region of DNA supposed to facilitate a rapid identification of species. In many protistan lineages, a lack of species-specific morphological characters hampers an identification of species by light or electron microscopy, and difficulties to perform mating experiments in laboratory cultures also do not allow for an identification of biological species. Thus, testing candidate barcode markers as well as establishment of accurately working species identification systems are more challenging than in multicellular organisms. In cryptic species complexes the performance of a potential barcode marker can not be monitored using morphological characters as a feedback, but an inappropriate choice of DNA region may result in artifactual species trees for several reasons. Therefore a priori knowledge of the systematics of a group is required. In addition to identification of known species, methods for an automatic delimitation of species with DNA barcodes have been proposed. The Cryptophyceae provide a mixture of systematically well characterized as well as badly characterized groups and are used in this study to test the suitability of some of the methods for protists. As species identification method the performance of blast in searches against badly to well-sampled reference databases has been tested with COI-5P and 5'-partial LSU rDNA (domains A to D of the nuclear LSU rRNA gene. In addition the performance of two different methods for automatic species delimitation, fixed thresholds of genetic divergence and the general mixed Yule-coalescent model (GMYC, have been examined. The study demonstrates some pitfalls of barcoding methods that have to be taken care of. Also a best-practice approach towards establishing a DNA barcode system in protists is proposed.

  3. Electronic Inventory Systems and Barcode Technology: Impact on Pharmacy Technical Accuracy and Error Liability

    Science.gov (United States)

    Oldland, Alan R.; May, Sondra K.; Barber, Gerard R.; Stolpman, Nancy M.

    2015-01-01

    Purpose: To measure the effects associated with sequential implementation of electronic medication storage and inventory systems and product verification devices on pharmacy technical accuracy and rates of potential medication dispensing errors in an academic medical center. Methods: During four 28-day periods of observation, pharmacists recorded all technical errors identified at the final visual check of pharmaceuticals prior to dispensing. Technical filling errors involving deviations from order-specific selection of product, dosage form, strength, or quantity were documented when dispensing medications using (a) a conventional unit dose (UD) drug distribution system, (b) an electronic storage and inventory system utilizing automated dispensing cabinets (ADCs) within the pharmacy, (c) ADCs combined with barcode (BC) verification, and (d) ADCs and BC verification utilized with changes in product labeling and individualized personnel training in systems application. Results: Using a conventional UD system, the overall incidence of technical error was 0.157% (24/15,271). Following implementation of ADCs, the comparative overall incidence of technical error was 0.135% (10/7,379; P = .841). Following implementation of BC scanning, the comparative overall incidence of technical error was 0.137% (27/19,708; P = .729). Subsequent changes in product labeling and intensified staff training in the use of BC systems was associated with a decrease in the rate of technical error to 0.050% (13/26,200; P = .002). Conclusions: Pharmacy ADCs and BC systems provide complementary effects that improve technical accuracy and reduce the incidence of potential medication dispensing errors if this technology is used with comprehensive personnel training. PMID:25684799

  4. Advanced HEDL gamma scan system

    International Nuclear Information System (INIS)

    Smith, F.C.; Olson, R.N.

    1983-01-01

    The design of an advanced state-of-the-art gamma scan system built for the purpose of measuring the point-by-point gamma activity of irradiated fuel rods is described. The emphasis of the system design was to achieve the highest rate of throughput with the minimum per rod cost while maintaining system accuracy and reliability. Preliminary tests demonstrate that all system requirements were met or exceeded. The system provides improved throughput, precision, automation, flexibility, and data processing capability over previous gamma scan systems

  5. Tomography system having axial scanning

    International Nuclear Information System (INIS)

    1976-01-01

    An improved method and apparatus has been invented for the transaxial tomographic scanning of a patient to determine mass distribution internal to the patient. A scanning system is provided having a rotatably mounted X-ray radiation source/detector assembly which orbits and scans the patient in plane of orbit. The source provides a plurality of beams of radiation in the orbital plane. Beams pass through the patient to an array of detectors which are spaced in the plane of orbit and respectively aligned with one of the beams. Radiation intensity data is collected at predetermined orientations of each beam-detector pair as the assembly orbits about the patient

  6. Genetic barcodes

    Science.gov (United States)

    Weier, Heinz -Ulrich G

    2015-08-04

    Herein are described multicolor FISH probe sets termed "genetic barcodes" targeting several cancer or disease-related loci to assess gene rearrangements and copy number changes in tumor cells. Two, three or more different fluorophores are used to detect the genetic barcode sections thus permitting unique labeling and multilocus analysis in individual cell nuclei. Gene specific barcodes can be generated and combined to provide both numerical and structural genetic information for these and other pertinent disease associated genes.

  7. Transverse section radionuclide scanning system

    International Nuclear Information System (INIS)

    Kuhl, D.E.; Edwards, R.Q.

    1976-01-01

    This invention provides a transverse section radionuclide scanning system for high-sensitivity quantification of brain radioactivity in cross-section picture format in order to permit accurate assessment of regional brain function localized in three dimensions. High sensitivity crucially depends on overcoming the heretofore known raster type scanning, which requires back and forth detector movement involving dead-time or partial enclosure of the scan field. Accordingly, this invention provides a detector array having no back and forth movement by interlaced detectors that enclose the scan field and rotate as an integral unit around one axis of rotation in a slip ring that continuously transmits the detector data by means of laser emitting diodes, with the advantages that increased amounts of data can be continuously collected, processed and displayed with increased sensitivity according to a suitable computer program. 5 claims, 11 figures

  8. CAMAC gamma ray scanning system

    International Nuclear Information System (INIS)

    Moss, C.E.; Pratt, J.C.; Shunk, E.R.

    1981-01-01

    A flexible gamma-ray scanning system, based on a LeCroy 3500 multichannel analyzer and CAMAC modules, is described. The system is designed for making simultaneous passive and active scans of objects of interest to nuclear safeguards. The scanner is a stepping-motor-driven carriage; the detectors, a bismuth-germanate scintillator and a high-purity germanium detector. A total of sixteen peaks in the two detector-produced spectra can be integrated simultaneously, and any scan can be viewed during data acquisition. For active scanning, the 2615-keV gamma-ray line from a 232 U source and the 4439-keV gamma-ray line from 9 Be(α,n) 12 C were selected. The system can be easily reconfigured to accommodate up to seven detectors because it is based on CAMAC modules and FORTRAN. The system is designed for field use and is easily transported. Examples of passive and active scans are presented

  9. Footwear scanning systems and methods

    Science.gov (United States)

    Fernandes, Justin L.; McMakin, Douglas L.; Sheen, David M.; Tedeschi, Jonathan R.

    2017-07-25

    Methods and apparatus for scanning articles, such as footwear, to provide information regarding the contents of the articles are described. According to one aspect, a footwear scanning system includes a platform configured to contact footwear to be scanned, an antenna array configured to transmit electromagnetic waves through the platform into the footwear and to receive electromagnetic waves from the footwear and the platform, a transceiver coupled with antennas of the antenna array and configured to apply electrical signals to at least one of the antennas to generate the transmitted electromagnetic waves and to receive electrical signals from at least another of the antennas corresponding to the electromagnetic waves received by the others of the antennas, and processing circuitry configured to process the received electrical signals from the transceiver to provide information regarding contents within the footwear.

  10. Developing mobile BIM/2D barcode-based automated facility management system.

    Science.gov (United States)

    Lin, Yu-Cheng; Su, Yu-Chih; Chen, Yen-Pei

    2014-01-01

    Facility management (FM) has become an important topic in research on the operation and maintenance phase. Managing the work of FM effectively is extremely difficult owing to the variety of environments. One of the difficulties is the performance of two-dimensional (2D) graphics when depicting facilities. Building information modeling (BIM) uses precise geometry and relevant data to support the facilities depicted in three-dimensional (3D) object-oriented computer-aided design (CAD). This paper proposes a new and practical methodology with application to FM that uses an integrated 2D barcode and the BIM approach. Using 2D barcode and BIM technologies, this study proposes a mobile automated BIM-based facility management (BIMFM) system for FM staff in the operation and maintenance phase. The mobile automated BIMFM system is then applied in a selected case study of a commercial building project in Taiwan to verify the proposed methodology and demonstrate its effectiveness in FM practice. The combined results demonstrate that a BIMFM-like system can be an effective mobile automated FM tool. The advantage of the mobile automated BIMFM system lies not only in improving FM work efficiency for the FM staff but also in facilitating FM updates and transfers in the BIM environment.

  11. Developing Mobile BIM/2D Barcode-Based Automated Facility Management System

    Directory of Open Access Journals (Sweden)

    Yu-Cheng Lin

    2014-01-01

    Full Text Available Facility management (FM has become an important topic in research on the operation and maintenance phase. Managing the work of FM effectively is extremely difficult owing to the variety of environments. One of the difficulties is the performance of two-dimensional (2D graphics when depicting facilities. Building information modeling (BIM uses precise geometry and relevant data to support the facilities depicted in three-dimensional (3D object-oriented computer-aided design (CAD. This paper proposes a new and practical methodology with application to FM that uses an integrated 2D barcode and the BIM approach. Using 2D barcode and BIM technologies, this study proposes a mobile automated BIM-based facility management (BIMFM system for FM staff in the operation and maintenance phase. The mobile automated BIMFM system is then applied in a selected case study of a commercial building project in Taiwan to verify the proposed methodology and demonstrate its effectiveness in FM practice. The combined results demonstrate that a BIMFM-like system can be an effective mobile automated FM tool. The advantage of the mobile automated BIMFM system lies not only in improving FM work efficiency for the FM staff but also in facilitating FM updates and transfers in the BIM environment.

  12. Developing Mobile BIM/2D Barcode-Based Automated Facility Management System

    Science.gov (United States)

    Chen, Yen-Pei

    2014-01-01

    Facility management (FM) has become an important topic in research on the operation and maintenance phase. Managing the work of FM effectively is extremely difficult owing to the variety of environments. One of the difficulties is the performance of two-dimensional (2D) graphics when depicting facilities. Building information modeling (BIM) uses precise geometry and relevant data to support the facilities depicted in three-dimensional (3D) object-oriented computer-aided design (CAD). This paper proposes a new and practical methodology with application to FM that uses an integrated 2D barcode and the BIM approach. Using 2D barcode and BIM technologies, this study proposes a mobile automated BIM-based facility management (BIMFM) system for FM staff in the operation and maintenance phase. The mobile automated BIMFM system is then applied in a selected case study of a commercial building project in Taiwan to verify the proposed methodology and demonstrate its effectiveness in FM practice. The combined results demonstrate that a BIMFM-like system can be an effective mobile automated FM tool. The advantage of the mobile automated BIMFM system lies not only in improving FM work efficiency for the FM staff but also in facilitating FM updates and transfers in the BIM environment. PMID:25250373

  13. Obstacles to Industrial Implementation of Scanning Systems

    Science.gov (United States)

    Anders Astrom; Olog Broman; John Graffman; Anders Gronlund; Armas Jappinene; Jari Luostarinen; Jan Nystrom; Daniel L. Schmoldt

    1998-01-01

    Initially the group discussed what is meant by scanning systems. An operational definition was adopted to consider scanning system in the current context to be nontraditional scanning. Where, traditional scanning is defined as scanning that has been industrially operational and relatively common for several years-a mature technology. For example,...

  14. Fungal DNA barcoding.

    Science.gov (United States)

    Xu, Jianping

    2016-11-01

    Fungi are ubiquitous in both natural and human-made environments. They play important roles in the health of plants, animals, and humans, and in broad ecosystem functions. Thus, having an efficient species-level identification system could significantly enhance our ability to treat fungal diseases and to monitor the spatial and temporal patterns of fungal distributions and migrations. DNA barcoding is a potent approach for rapid identification of fungal specimens, generating novel species hypothesis, and guiding biodiversity and ecological studies. In this mini-review, I briefly summarize (i) the history of DNA sequence-based fungal identification; (ii) the emergence of the ITS region as the consensus primary fungal barcode; (iii) the use of the ITS barcodes to address a variety of issues on fungal diversity from local to global scales, including generating a large number of species hypothesis; and (iv) the problems with the ITS barcode region and the approaches to overcome these problems. Similar to DNA barcoding research on plants and animals, significant progress has been achieved over the last few years in terms of both the questions being addressed and the foundations being laid for future research endeavors. However, significant challenges remain. I suggest three broad areas of research to enhance the usefulness of fungal DNA barcoding to meet the current and future challenges: (i) develop a common set of primers and technologies that allow the amplification and sequencing of all fungi at both the primary and secondary barcode loci; (ii) compile a centralized reference database that includes all recognized fungal species as well as species hypothesis, and allows regular updates from the research community; and (iii) establish a consensus set of new species recognition criteria based on barcode DNA sequences that can be applied across the fungal kingdom.

  15. A DNA-based registry for all animal species: the barcode index number (BIN system.

    Directory of Open Access Journals (Sweden)

    Sujeevan Ratnasingham

    Full Text Available Because many animal species are undescribed, and because the identification of known species is often difficult, interim taxonomic nomenclature has often been used in biodiversity analysis. By assigning individuals to presumptive species, called operational taxonomic units (OTUs, these systems speed investigations into the patterning of biodiversity and enable studies that would otherwise be impossible. Although OTUs have conventionally been separated through their morphological divergence, DNA-based delineations are not only feasible, but have important advantages. OTU designation can be automated, data can be readily archived, and results can be easily compared among investigations. This study exploits these attributes to develop a persistent, species-level taxonomic registry for the animal kingdom based on the analysis of patterns of nucleotide variation in the barcode region of the cytochrome c oxidase I (COI gene. It begins by examining the correspondence between groups of specimens identified to a species through prior taxonomic work and those inferred from the analysis of COI sequence variation using one new (RESL and four established (ABGD, CROP, GMYC, jMOTU algorithms. It subsequently describes the implementation, and structural attributes of the Barcode Index Number (BIN system. Aside from a pragmatic role in biodiversity assessments, BINs will aid revisionary taxonomy by flagging possible cases of synonymy, and by collating geographical information, descriptive metadata, and images for specimens that are likely to belong to the same species, even if it is undescribed. More than 274,000 BIN web pages are now available, creating a biodiversity resource that is positioned for rapid growth.

  16. Barcode uses and abuses

    Energy Technology Data Exchange (ETDEWEB)

    KEENEN,MARTHA JANE; NUSBAUM,ANNA W.

    2000-05-18

    Barcodes are something that everybody sees every day; so common as to be taken for granted and normally unnoticed. Readable, no one reads them. They are used to allow machines to identify a wide variety of non-electronic, real life objects. Barcode is one of the earliest types of what is now called ``Automatic Identification and Data Capture'' (AIDC), meaning ``data was transmitted into whatever system by something other than typing or hand-writing.'' There are 18 technologies, broken down into six categories--biometrics, electromagnetic, magnetic, optical, Smart Cards, Touch--included in the AIDC concept. Many are used jointly with or as adjuncts to a basic barcode system of some type. All are based on assignment of a unique identifier to the object, usually a number. The uniqueness presumption makes barcode systems very applicable and appropriate to the nuclear information management venue as they inherently comply with the Nuclear Quality Assurance (NQA-1) requirements. Barcode systems belong to the optical category of AIDC. It is very old in usage as these technologies go, having first been patented in 1949. It astonished me, in researching this paper, to find that there are over 250 types of barcode (symbologies), each with its own specialized attributes, though only a few dozen are in active use. The initial uses were in the early 1950s and diversity of use is ever increasing as people find new ways to make this versatile old technology work. To what else could it be applied, in the future? This paper attempts to answer this.

  17. Development of a DNA barcoding system for seagrasses: successful but not simple.

    Directory of Open Access Journals (Sweden)

    Christina Lucas

    Full Text Available Seagrasses, a unique group of submerged flowering plants, profoundly influence the physical, chemical and biological environments of coastal waters through their high primary productivity and nutrient recycling ability. They provide habitat for aquatic life, alter water flow, stabilize the ground and mitigate the impact of nutrient pollution. at the coast region. Although on a global scale seagrasses represent less than 0.1% of the angiosperm taxa, the taxonomical ambiguity in delineating seagrass species is high. Thus, the taxonomy of several genera is unsolved. While seagrasses are capable of performing both, sexual and asexual reproduction, vegetative reproduction is common and sexual progenies are always short lived and epimeral in nature. This makes species differentiation often difficult, especially for non-taxonomists since the flower as a distinct morphological trait is missing. Our goal is to develop a DNA barcoding system assisting also non-taxonomists to identify regional seagrass species. The results will be corroborated by publicly available sequence data. The main focus is on the 14 described seagrass species of India, supplemented with seagrasses from temperate regions. According to the recommendations of the Consortium for the Barcoding of Life (CBOL rbcL and matK were used in this study. After optimization of the DNA extraction method from preserved seagrass material, the respective sequences were amplified from all species analyzed. Tree- and character-based approaches demonstrate that the rbcL sequence fragment is capable of resolving up to family and genus level. Only matK sequences were reliable in resolving species and partially the ecotype level. Additionally, a plastidic gene spacer was included in the analysis to confirm the identification level. Although the analysis of these three loci solved several nodes, a few complexes remained unsolved, even when constructing a combined tree for all three loci. Our approaches

  18. QR Codes in the Library: "It's Not Your Mother's Barcode!"

    Science.gov (United States)

    Dobbs, Cheri

    2011-01-01

    Barcode scanning has become more than just fun. Now libraries and businesses are leveraging barcode technology as an innovative tool to market their products and ideas. Developed and popularized in Japan, these Quick Response (QR) or two-dimensional barcodes allow marketers to provide interactive content in an otherwise static environment. In this…

  19. Use of bar-code technology in MC and A system

    International Nuclear Information System (INIS)

    Mykhaylov, V.; Odeychuk, N.; Tovkanetz, V.; Lapshin, V.; Ewing, T.

    2001-01-01

    Full text: Significant problem during the treatment with nuclear materials is the usage of reliable, rapid, integrant automated systems of nuclear material control and account. Thus the dose loading of attending technical personnel is essentially reduced. One of the directions of the solution of the indicated problems is the usage of bar-code technology. Such integrated system should include protection of materials, measuring of materials, and record of materials and drawing up of an inventory list. Especially it is important for the enterprises, on which the enriched uranium and other nuclear materials, which are under IAEA warranties, are utilized. According to US assistance program in the field of MC and A, NSC KIPT has been received indispensable equipment and software, including equipment of nondestructive analysis and automated inventory material accounting system (AIMAS), which was intended for modernizing of nuclear material account system in NSC KIPT. The purpose of operations was estimation of generalized procedures on both MC and A and nondestructive analysis, and updating them so that they might obey the specific conditions of the Enterprise and demands of the Ukraine Regulatory Administration. In NSC KIPT, which is the largest nuclear and physics research center in Ukraine, the measures on enactment of bar-code technology for nuclear materials control and account with the usage of equipment and software of US leading firms (Intermec, Prodigy Max, Tharo Systems, Inc) have been conducting since 1999. During the introduction of this technology, it has been installed the software on nuclear material control and account (AIMAS data base), which was intended for this activities, on NSC KIPT computers. The structure of the NSC KIPT's facility has been determined according to demands of the State and IAEA demands. The key measuring points of inventory quantity has been determined in nuclear material balance zone and the concrete computers, on which is kept

  20. Improvement in two-dimensional barcode

    Indian Academy of Sciences (India)

    SONAM WASULE

    ing devices uses red, green and blue sensing channels. This causes problem of intensity and depth variation during printing and scanning. The problem of colour ... and data security and compression, over the traditional black and white barcodes. The development of colour barcodes is still challenging since the intensity ...

  1. Status of automated nuclear scanning systems

    International Nuclear Information System (INIS)

    Gold, R.; Roberts, J.H.; Preston, C.C.; McNeece, J.P.; Ruddy, F.H.

    1983-07-01

    Present day minicomputers and microprocessors enable a range of automation, from partial to total, of tasks once thought beyond approach. The status of three computer controlled systems for quantitative track measurements is reviewed. Two systems, the Hanford optical track scanner (HOTS) and an automated scanning electron microscope (ASEM) are used for scanning solid state track recorders (SSTR). The third systems, the emulsion scanning processor (ESP), is an interactive system used to measure the length of proton tracks in nuclear research emulsions (NRE). Current limitations of these systems for quantitative track scanning are presented. Experimental uncertainties attained with these computer controlled systems are described using results obtained from reactor neutron dosimetry

  2. Developing an Apicomplexan DNA Barcoding System to Detect Blood Parasites of Small Coral Reef Fishes.

    Science.gov (United States)

    Renoux, Lance P; Dolan, Maureen C; Cook, Courtney A; Smit, Nico J; Sikkel, Paul C

    2017-08-01

    Apicomplexan parasites are obligate parasites of many species of vertebrates. To date, there is very limited understanding of these parasites in the most-diverse group of vertebrates, actinopterygian fishes. While DNA barcoding targeting the eukaryotic 18S small subunit rRNA gene sequence has been useful in identifying apicomplexans in tetrapods, identification of apicomplexans infecting fishes has relied solely on morphological identification by microscopy. In this study, a DNA barcoding method was developed that targets the 18S rRNA gene primers for identifying apicomplexans parasitizing certain actinopterygian fishes. A lead primer set was selected showing no cross-reactivity to the overwhelming abundant host DNA and successfully confirmed 37 of the 41 (90.2%) microscopically verified parasitized fish blood samples analyzed in this study. Furthermore, this DNA barcoding method identified 4 additional samples that screened negative for parasitemia, suggesting this molecular method may provide improved sensitivity over morphological characterization by microscopy. In addition, this PCR screening method for fish apicomplexans, using Whatman FTA preserved DNA, was tested in efforts leading to a more simplified field collection, transport, and sample storage method as well as a streamlining sample processing important for DNA barcoding of large sample sets.

  3. A robotic scanning system for ultrasonic inspection

    International Nuclear Information System (INIS)

    De Buda, E.; Moles, M.D.C.; Chan, W.K.

    1984-01-01

    The reliability of flaw detection is a major concern in ultrasonic inspections. A robotic ultrasonic scanning system, which is being developed at Ontario Hydro, Research Division, promises to provide repeatable and accurate ultrasonic scans to allow better mixing and identification of defects than would be possible with manual methods

  4. 76 FR 23749 - Intelligent Mail Package Barcode (IMpb) Implementation for Commercial Parcels

    Science.gov (United States)

    2011-04-28

    ... POSTAL SERVICE 39 CFR Part 111 Intelligent Mail Package Barcode (IMpb) Implementation for... scanning of Intelligent Mail[supreg] package barcodes (IMpb) and other extra services barcodes via automated processing equipment and Intelligent Mail scanning devices. Once fully implemented, tracking data...

  5. Barcoding poplars (Populus L. from western China.

    Directory of Open Access Journals (Sweden)

    Jianju Feng

    Full Text Available BACKGROUND: Populus is an ecologically and economically important genus of trees, but distinguishing between wild species is relatively difficult due to extensive interspecific hybridization and introgression, and the high level of intraspecific morphological variation. The DNA barcoding approach is a potential solution to this problem. METHODOLOGY/PRINCIPAL FINDINGS: Here, we tested the discrimination power of five chloroplast barcodes and one nuclear barcode (ITS among 95 trees that represent 21 Populus species from western China. Among all single barcode candidates, the discrimination power is highest for the nuclear ITS, progressively lower for chloroplast barcodes matK (M, trnG-psbK (G and psbK-psbI (P, and trnH-psbA (H and rbcL (R; the discrimination efficiency of the nuclear ITS (I is also higher than any two-, three-, or even the five-locus combination of chloroplast barcodes. Among the five combinations of a single chloroplast barcode plus the nuclear ITS, H+I and P+I differentiated the highest and lowest portion of species, respectively. The highest discrimination rate for the barcodes or barcode combinations examined here is 55.0% (H+I, and usually discrimination failures occurred among species from sympatric or parapatric areas. CONCLUSIONS/SIGNIFICANCE: In this case study, we showed that when discriminating Populus species from western China, the nuclear ITS region represents a more promising barcode than any maternally inherited chloroplast region or combination of chloroplast regions. Meanwhile, combining the ITS region with chloroplast regions may improve the barcoding success rate and assist in detecting recent interspecific hybridizations. Failure to discriminate among several groups of Populus species from sympatric or parapatric areas may have been the result of incomplete lineage sorting, frequent interspecific hybridizations and introgressions. We agree with a previous proposal for constructing a tiered barcoding system in

  6. Scanning tunneling microscope assembly, reactor, and system

    Science.gov (United States)

    Tao, Feng; Salmeron, Miquel; Somorjai, Gabor A

    2014-11-18

    An embodiment of a scanning tunneling microscope (STM) reactor includes a pressure vessel, an STM assembly, and three spring coupling objects. The pressure vessel includes a sealable port, an interior, and an exterior. An embodiment of an STM system includes a vacuum chamber, an STM reactor, and three springs. The three springs couple the STM reactor to the vacuum chamber and are operable to suspend the scanning tunneling microscope reactor within the interior of the vacuum chamber during operation of the STM reactor. An embodiment of an STM assembly includes a coarse displacement arrangement, a piezoelectric fine displacement scanning tube coupled to the coarse displacement arrangement, and a receiver. The piezoelectric fine displacement scanning tube is coupled to the coarse displacement arrangement. The receiver is coupled to the piezoelectric scanning tube and is operable to receive a tip holder, and the tip holder is operable to receive a tip.

  7. Utility of GenBank and the Barcode of Life Data Systems (BOLD) for the identification of forensically important Diptera from Belgium and France

    Science.gov (United States)

    Sonet, Gontran; Jordaens, Kurt; Braet, Yves; Bourguignon, Luc; Dupont, Eréna; Backeljau, Thierry; De Meyer, Marc; Desmyter, Stijn

    2013-01-01

    Abstract Fly larvae living on dead corpses can be used to estimate post-mortem intervals. The identification of these flies is decisive in forensic casework and can be facilitated by using DNA barcodes provided that a representative and comprehensive reference library of DNA barcodes is available. We constructed a local (Belgium and France) reference library of 85 sequences of the COI DNA barcode fragment (mitochondrial cytochrome c oxidase subunit I gene), from 16 fly species of forensic interest (Calliphoridae, Muscidae, Fanniidae). This library was then used to evaluate the ability of two public libraries (GenBank and the Barcode of Life Data Systems – BOLD) to identify specimens from Belgian and French forensic cases. The public libraries indeed allow a correct identification of most specimens. Yet, some of the identifications remain ambiguous and some forensically important fly species are not, or insufficiently, represented in the reference libraries. Several search options offered by GenBank and BOLD can be used to further improve the identifications obtained from both libraries using DNA barcodes. PMID:24453564

  8. Laser scanning laser diode photoacoustic microscopy system.

    Science.gov (United States)

    Erfanzadeh, Mohsen; Kumavor, Patrick D; Zhu, Quing

    2018-03-01

    The development of low-cost and fast photoacoustic microscopy systems enhances the clinical applicability of photoacoustic imaging systems. To this end, we present a laser scanning laser diode-based photoacoustic microscopy system. In this system, a 905 nm, 325 W maximum output peak power pulsed laser diode with 50 ns pulsewidth is utilized as the light source. A combination of aspheric and cylindrical lenses is used for collimation of the laser diode beam. Two galvanometer scanning mirrors steer the beam across a focusing aspheric lens. The lateral resolution of the system was measured to be ∼21 μm using edge spread function estimation. No averaging was performed during data acquisition. The imaging speed is ∼370 A-lines per second. Photoacoustic microscopy images of human hairs, ex vivo mouse ear, and ex vivo porcine ovary are presented to demonstrate the feasibility and potentials of the proposed system.

  9. An automated fuel element scanning system

    International Nuclear Information System (INIS)

    Robinson, L.; Hobbs, R.W.; Dyer, F.F.; Pugh, L.P.; Teasley, N.A. Jr.; Snelgrove, J.L.

    1988-01-01

    This paper describes an automated fuel element scanning system, based upon gamma-ray spectroscopy, that has been developed at the Oak Ridge Research Reactor. The scanning system is located in the reactor pool and allows fuel elements to be scanned nondestructively at various intervals during their core life. Gamma-ray measurements are made using a GeLi detector positioned above the pool water. Measurements of 137 Cs count rates from relatively 'cold' elements indicate that the counting data obtained using this apparatus is reproducible within 5%. Power distribution in the reactor's core is derived from 140 La counting data. The method of determining power is discussed briefly and some example results are presented. (author) 11 refs.; 7 figs.; 4 tabs

  10. CS-Studio Scan System Parallelization

    Energy Technology Data Exchange (ETDEWEB)

    Kasemir, Kay [ORNL; Pearson, Matthew R [ORNL

    2015-01-01

    For several years, the Control System Studio (CS-Studio) Scan System has successfully automated the operation of beam lines at the Oak Ridge National Laboratory (ORNL) High Flux Isotope Reactor (HFIR) and Spallation Neutron Source (SNS). As it is applied to additional beam lines, we need to support simultaneous adjustments of temperatures or motor positions. While this can be implemented via virtual motors or similar logic inside the Experimental Physics and Industrial Control System (EPICS) Input/Output Controllers (IOCs), doing so requires a priori knowledge of experimenters requirements. By adding support for the parallel control of multiple process variables (PVs) to the Scan System, we can better support ad hoc automation of experiments that benefit from such simultaneous PV adjustments.

  11. 76 FR 59504 - Intelligent Mail Package Barcode (IMpb) Implementation for Commercial Parcels

    Science.gov (United States)

    2011-09-27

    ... POSTAL SERVICE 39 CFR Part 111 Intelligent Mail Package Barcode (IMpb) Implementation for... various sections to require the use of an Intelligent Mail unique tracking barcode on all commercial... extra services barcodes with automated processing equipment and Intelligent Mail scanning devices. Once...

  12. Barcode System for Genetic Identification of Soybean [Glycine max(L.) Merrill] Cultivars Using InDel Markers Specific to Dense Variation Blocks.

    Science.gov (United States)

    Sohn, Hwang-Bae; Kim, Su-Jeong; Hwang, Tae-Young; Park, Hyang-Mi; Lee, Yu-Young; Markkandan, Kesavan; Lee, Dongwoo; Lee, Sunghoon; Hong, Su-Young; Song, Yun-Ho; Koo, Bon-Cheol; Kim, Yul-Ho

    2017-01-01

    For genetic identification of soybean [ Glycine max (L.) Merrill] cultivars, insertions/deletions (InDel) markers have been preferred currently because they are easy to use, co-dominant and relatively abundant. Despite their biological importance, the investigation of InDels with proven quality and reproducibility has been limited. In this study, we described soybean barcode system approach based on InDel makers, each of which is specific to a dense variation block (dVB) with non-random recombination due to many variations. Firstly, 2,274 VBs were mined by analyzing whole genome data in six soybean cultivars (Backun, Sinpaldal 2, Shingi, Daepoong, Hwangkeum, and Williams 82) for transferability to dVB-specific InDel markers. Secondly, 73,327 putative InDels in the dVB regions were identified for the development of soybean barcode system. Among them, 202 dVB-specific InDels from all soybean cultivars were selected by gel electrophoresis, which were converted as 2D barcode types according to comparing amplicon polymorphisms in the five cultivars to the reference cultivar. Finally, the polymorphism of the markers were assessed in 147 soybean cultivars, and the soybean barcode system that allows a clear distinction among soybean cultivars is also detailed. In addition, the changing of the dVBs in a chromosomal level can be quickly identified due to investigation of the reshuffling pattern of the soybean cultivars with 27 maker sets. Especially, a backcross-inbred offspring, "Singang" and a recurrent parent, "Sowon" were identified by using the 27 InDel markers. These results indicate that the soybean barcode system enables not only the minimal use of molecular markers but also comparing the data from different sources due to no need of exploiting allele binning in new varieties.

  13. Cornea Optical Topographical Scan System (COTSS)

    Science.gov (United States)

    1986-01-01

    The Cornea Optical Topographical Scan System (COTSS) is an instrument designed for use by opthalmologist to aid in performing surgical procedures such as radial keratotomy and to provide quick accurate data to aid in prescribing contact lenses and eyeglasses. A breadboard of the system was built and demonstrated in June of 1984. Additional refinements to the breadboard are needed to meet systems requirements prior to proceeding with prototype development. The present status of the COTSS instrument is given and the areas in which system refinements are required, are defined.

  14. A Single-Molecule Barcoding System using Nanoslits for DNA Analysis

    Science.gov (United States)

    Jo, Kyubong; Schramm, Timothy M.; Schwartz, David C.

    , creating molecular barcodes, which are efficiently read using fluorescence resonance energy transfer techniques for minimizing noise from unincorporated labels. As such, our integrative approach for the realization of genomic analysis through nanoconfinement, named nanocoding, was demonstrated through the barcoding and mapping of bacterial artificial chromosomal molecules, thereby providing the basis for a high-throughput platform competent for whole genome investigations.

  15. Overview of the low energy accelerator scanning system

    International Nuclear Information System (INIS)

    Leo Kwee Wah; Lojius Lombigit; Muhamad Zahidee Taat; Abu Bakar Ghazali; Mohd Rizal Ibrahim; Mohd Rizal Chulan Md Chulan; Azaman Ahmad; Abdul Halim Baijan; Rokiah Mohd Sabri

    2009-01-01

    This paper describes the specification of the low energy accelerator (Baby-EBM; Electron Beam Machine) scanning system. It comprises a discussion of coil inductance measurement, power supply design and the test results. The scanning horn system was completely assembled and tested; it was found that the system is able to scan the beam across the scanning window with a required beam profile. (Author)

  16. Development of an automatic pipeline scanning system

    Energy Technology Data Exchange (ETDEWEB)

    Kim, Jae H.; Lee, Jae C.; Moon, Soon S.; Eom, Heung S.; Choi, Yu R

    1999-11-01

    Pressure pipe inspection in nuclear power plants is one of the mandatory regulation items. Comparing to manual ultrasonic inspection, automatic inspection has the benefits of more accurate and reliable inspection results and reduction of radiation disposal. final object of this project is to develop an automatic pipeline inspection system of pressure pipe welds in nuclear power plants. We developed a pipeline scanning robot with four magnetic wheels and 2-axis manipulator for controlling ultrasonic transducers, and developed the robot control computer which controls the robot to navigate along inspection path exactly. We expect our system can contribute to reduction of inspection time, performance enhancement, and effective management of inspection results. The system developed by this project can be practically used for inspection works after field tests. (author)

  17. Establishing and evaluating bar-code technology in blood sampling system: a model based on human centered human-centered design method.

    Science.gov (United States)

    Chou, Shin-Shang; Yan, Hsiu-Fang; Huang, Hsiu-Ya; Tseng, Kuan-Jui; Kuo, Shu-Chen

    2012-01-01

    This study intended to use a human-centered design study method to develop a bar-code technology in blood sampling process. By using the multilevel analysis to gather the information, the bar-code technology has been constructed to identify the patient's identification, simplify the work process, and prevent medical error rates. A Technology Acceptance Model questionnaire was developed to assess the effectiveness of system and the data of patient's identification and sample errors were collected daily. The average scores of 8 items users' perceived ease of use was 25.21(3.72), 9 items users' perceived usefulness was 28.53(5.00), and 14 items task-technology fit was 52.24(7.09), the rate of patient identification error and samples with order cancelled were down to zero, however, new errors were generated after the new system deployed; which were the position of barcode stickers on the sample tubes. Overall, more than half of nurses (62.5%) were willing to use the new system.

  18. Recommendations for Using Barcode in Hospital Process.

    Science.gov (United States)

    Hachesu, Peyman Rezaei; Zyaei, Leila; Hassankhani, Hadi

    2016-06-01

    Lack of attention to the proper barcode using leads to lack of use or misuse in the hospitals. The present research aimed to investigate the requirements and barrier for using barcode technology and presenting suggestions to use it. The research is observational-descriptive. The data was collected using the designed checklist which its validity was assessed. This check list consists of two parts: "Requirements" and "barrier" of using the barcodes. Research community included 10 teaching hospitals and a class of 65 participants included people in the hospitals. The collected data was analyzed using descriptive statistics. Required changes of workflow processes in the hospital and compliance them with the hospital policy are such requirements that had been infringed in the 90 % of hospitals. Prioritization of some hospital processes for barcoding, system integration with Hospital Information system (HIS), training of staff and budgeting are requirements for the successful implementation which had been infringed in the 80% of hospitals. Dissatisfaction with the quality of barcode labels and lacks of adequate scanners both whit the rate of 100 %, and the lack of understanding of the necessary requirements for implementation of barcodes as 80% were the most important barrier. Integrate bar code system with clinical workflow should be considered. Lack of knowledge and understanding toward the infrastructure, inadequate staff training and technologic problems are considered as the greatest barriers.

  19. DNA Barcoding through Quaternary LDPC Codes.

    Directory of Open Access Journals (Sweden)

    Elizabeth Tapia

    Full Text Available For many parallel applications of Next-Generation Sequencing (NGS technologies short barcodes able to accurately multiplex a large number of samples are demanded. To address these competitive requirements, the use of error-correcting codes is advised. Current barcoding systems are mostly built from short random error-correcting codes, a feature that strongly limits their multiplexing accuracy and experimental scalability. To overcome these problems on sequencing systems impaired by mismatch errors, the alternative use of binary BCH and pseudo-quaternary Hamming codes has been proposed. However, these codes either fail to provide a fine-scale with regard to size of barcodes (BCH or have intrinsic poor error correcting abilities (Hamming. Here, the design of barcodes from shortened binary BCH codes and quaternary Low Density Parity Check (LDPC codes is introduced. Simulation results show that although accurate barcoding systems of high multiplexing capacity can be obtained with any of these codes, using quaternary LDPC codes may be particularly advantageous due to the lower rates of read losses and undetected sample misidentification errors. Even at mismatch error rates of 10(-2 per base, 24-nt LDPC barcodes can be used to multiplex roughly 2000 samples with a sample misidentification error rate in the order of 10(-9 at the expense of a rate of read losses just in the order of 10(-6.

  20. Tomosynthesis using high speed CT scanning system

    International Nuclear Information System (INIS)

    Boyd, D.P.; Rutt, B.K.

    1988-01-01

    In a high-speed CT scanning system in which fan beams of radiation are generated by sweeping an electron beam along a target and collimated X-rays emitted by the target are received by an array of detectors after passing through a patient area between the target and the array of detectors, a method of obtaining a tomograph of a patient is described comprising the steps of sweeping the electron beam along the target, measuring radiation received at detector positions as the electron beam is swept along the target; moving the patient past the collimated X-rays, and combining measurements at the detector positions as correlated in time to positions of the patient and tomosynthesizing the tomograph from data for lines in the desired plane for the positions of the patient

  1. Design and analysis of imagery system of laser scanning

    Science.gov (United States)

    Li, Tianze; Wang, Zhenhuan; Zhang, Xia; Hou, Luan; Jiang, Chuan

    2009-08-01

    This paper expounds the operation principle of laser scanning imagery system,after analyzing the light source, transmitter,receivewere and the continuous analogue electric signal which are in the laser scanning imagery system,a laser scanning imagery system is designed, the composition and main parts of the system were expounded. The performance referance date were reviewed.The characteristics of this systerm is that it not only can scanned but also can collect reflecting coefficient information and can do laser ranging.This paper analyze and disguess the scanning imagery system and the key technology of laser weapon, finally the applicating prospects of the system are described.

  2. Implementing a bar-code assisted medication administration system: effects on the dispensing process and user perceptions.

    Science.gov (United States)

    Samaranayake, N R; Cheung, S T D; Cheng, K; Lai, K; Chui, W C M; Cheung, B M Y

    2014-06-01

    We assessed the effects of a bar-code assisted medication administration system used without the support of computerised prescribing (stand-alone BCMA), on the dispensing process and its users. The stand-alone BCMA system was implemented in one ward of a teaching hospital. The number of dispensing steps, dispensing time and potential dispensing errors (PDEs) were directly observed one month before and eight months after the intervention. Attitudes of pharmacy and nursing staff were assessed using a questionnaire (Likert scale) and interviews. Among 1291 and 471 drug items observed before and after the introduction of the technology respectively, the number of dispensing steps increased from five to eight and time (standard deviation) to dispense one drug item by one staff personnel increased from 0.8 (0.09) to 1.5 (0.12) min. Among 2828 and 471 drug items observed before and after the intervention respectively, the number of PDEs increased significantly (Ptechnology decreased significantly (P=0.003 and P=0.004 respectively) among users who participated in the before (N=16) and after (N=16) questionnaires surveys. Among the interviewees, pharmacy staff felt that the system offered less benefit to the dispensing process (9/16). Nursing staff perceived the system as useful in improving the accuracy of drug administration (7/10). Implementing a stand-alone BCMA system may slow down and complicate the dispensing process. Nursing staff believe the stand-alone BCMA system could improve the drug administration process but pharmacy staff believes the technology would be more helpful if supported by computerised prescribing. However, periodical assessments are needed to identify weaknesses in the process after implementation, and all users should be educated on the benefits of using this technology. Copyright © 2014 Elsevier Ireland Ltd. All rights reserved.

  3. Whole body scan system based on γ camera

    International Nuclear Information System (INIS)

    Ma Tianyu; Jin Yongjie

    2001-01-01

    Most existing domestic γ cameras can not perform whole body scan protocol, which is of important use in clinic. The authors designed a set of whole body scan system, which is made up of a scan bed, an ISA interface card controlling the scan bed and the data acquisition software based on a data acquisition and image processing system for γ cameras. The image was obtained in clinical experiment, and the authors think it meets the need of clinical diagnosis. Application of this system in γ cameras can provide whole body scan function at low cost

  4. BLOG 2.0: a software system for character-based species classification with DNA Barcode sequences. What it does, how to use it

    NARCIS (Netherlands)

    Weitschek, E.; Velzen, van R.; Felici, G.; Bertolazzi, P.

    2013-01-01

    BLOG (Barcoding with LOGic) is a diagnostic and character-based DNA Barcode analysis method. Its aim is to classify specimens to species based on DNA Barcode sequences and on a supervised machine learning approach, using classification rules that compactly characterize species in terms of DNA

  5. Thermographic system with a laser scanning device

    International Nuclear Information System (INIS)

    Skvortsov, L A; Kirillov, V M

    2007-01-01

    It is shown that laser photothermal radiometry (LPTR) in combination with laser beam scanning within the instantaneous field of view of a single-element photodetector can be used to develop a scanning thermal emission microscope. An expression is derived for estimating its temperature resolution. The results of calculations are presented and the factors influencing the spatial lateral resolution of the technique and the time of image formation with the help of an acousto-optical deflector are analysed. (laser applications)

  6. Micro-scanning error correction technique for an optical micro-scanning thermal microscope imaging system

    Science.gov (United States)

    Gao, Mei-Jing; Tan, Ai-Ling; Yang, Ming; Xu, Jie; Zu, Zhen-Long; Wang, Jing-Yuan

    2018-01-01

    With optical micro-scanning technology, the spatial resolution of the thermal microscope imaging system can be increased without reducing the size of the detector unit or increasing the detector dimensions. Due to optical micro-scanning error, the four low-resolution images collected by micro-scanning thermal micro- scope imaging system are not standard down-sampled images. The reconstructed image quality is degraded by the direct image interpolation with error, which influences the performance of the system. Therefore, the technique to reduce the system micro-scanning error need to be studied. Based on micro-scanning technology and combined with new edge directed interpolation(NEDI) algorithm, an error correction technique for the micro-scanning instrument is proposed. Simulations and experiments show that the proposed technique can reduce the optical micro-scanning error, improve the imaging effect of the system and improve the systems spatial resolution. It can be applied to other electro-optical imaging systems to improve their resolution.

  7. A proton microbeam deflection system to scan target surfaces

    International Nuclear Information System (INIS)

    Heck, D.

    1978-12-01

    A system to deflect the proton beam within the Karlsruhe microbeam setup is described. The deflection is achieved whithin a transverse electrical field generated between parallel electrodes. Their tension is controlled by a pattern generator, thus enabling areal and line scans with a variable number of scan points at variable scan speed. The application is demonstrated at two different examples. (orig.) [de

  8. Bar_Code Housing System: la creación de un espacio de investigación interdisciplinar en torno al proyecto de arquitectura

    OpenAIRE

    Madrazo, Leandro; Avellaneda Diaz-Grande, Jaime; González Barroso, José M.

    2006-01-01

    BAR_CODE HOUSING SYSTEM es un proyecto de investigación sobre la vivienda colectiva construida con sistemas industrializados financiado por el Plan Nacional de I+D+i. El objetivo del proyecto es desarrollar un sistema integrado de diseño y construcción asistido por ordenador que facilite la interacción ente los agentes que participan en los procesos de diseño y construcción de viviendas (técnicos, constructores, fabricantes, administración, usuarios). La investigación abarca diversos ámbitos ...

  9. System and method for compressive scanning electron microscopy

    Science.gov (United States)

    Reed, Bryan W

    2015-01-13

    A scanning transmission electron microscopy (STEM) system is disclosed. The system may make use of an electron beam scanning system configured to generate a plurality of electron beam scans over substantially an entire sample, with each scan varying in electron-illumination intensity over a course of the scan. A signal acquisition system may be used for obtaining at least one of an image, a diffraction pattern, or a spectrum from the scans, the image, diffraction pattern, or spectrum representing only information from at least one of a select subplurality or linear combination of all pixel locations comprising the image. A dataset may be produced from the information. A subsystem may be used for mathematically analyzing the dataset to predict actual information that would have been produced by each pixel location of the image.

  10. Safe Active Scanning for Energy Delivery Systems Final Report

    Energy Technology Data Exchange (ETDEWEB)

    Helms, J. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Salazar, B. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Scheibel, P. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Engels, M. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Reiger, C. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)

    2017-09-30

    The Department of Energy’s Cybersecurity for Energy Delivery Systems Program has funded Safe(r) Active Scanning for Energy Delivery Systems, led by Lawrence Livermore National Laboratory, to investigate and analyze the impacts of active scanning in the operational environment of energy delivery systems. In collaboration with Pacific Northwest National Laboratory and Idaho National Laboratory, active scans across three testbeds including 38 devices were performed. This report gives a summary of the initial literature survey performed on the SASEDS project as well as industry partner interview summaries and main findings from Phase 1 of the project. Additionally, the report goes into the details of scanning techniques, methodologies for testing, testbed descriptions, and scanning results, with appendices to elaborate on the specific scans that were performed. As a result of testing, a single device out of 38 exhibited problems when actively scanned, and a reboot was required to fix it. This single failure indicates that active scanning is not likely to have a detrimental effect on the safety and resilience of energy delivery systems. We provide a path forward for future research that could enable wide adoption of active scanning and lead utilities to incorporate active scanning as part of their default network security plans to discover and rectify rogue devices, adversaries, and services that may be on the network. This increased network visibility will allow operational technology cybersecurity practitioners to improve their situational awareness of networks and their vulnerabilities.

  11. Computer controlled scanning systems for quantitative track measurements

    International Nuclear Information System (INIS)

    Gold, R.; Roberts, J.H.; Preston, C.C.; Ruddy, F.H.

    1982-01-01

    The status of three computer cntrolled systems for quantitative track measurements is described. Two systems, an automated optical track scanner (AOTS) and an automated scanning electron microscope (ASEM) are used for scanning solid state track recorders (SSTR). The third system, the emulsion scanning processor (ESP), is an interactive system used to measure the length of proton tracks in nuclear research emulsions (NRE). Recent advances achieved with these systems are presented, with emphasis placed upon the current limitation of these systems for reactor neutron dosimetry

  12. Further progress for a fast scanning of nuclear emulsions with Large Angle Scanning System

    Science.gov (United States)

    Alexandrov, A.; Tioukov, V.; Vladymyrov, M.

    2014-02-01

    The LASSO (Large Angle Scanning System for OPERA) is a scanning system designed in the framework of the OPERA experiment as a result of several R&Ds aimed to improve the performance of the European Scanning System (ESS) by increasing the scanning speed, the angular acceptance and the efficiency in microtrack reconstruction. The novel Continuous Motion (CM) scanning approach allows to double the ESS nominal speed without any changes in the hardware set-up. The LASSO modular design makes the system easily adaptable to new hardware. The novel microtrack reconstruction algorithm has been developed to be efficient in both standard Stop&Go (SG) and CM modes, performing a number of corrections during the processing like corrections for vibrations, optical distortions, field of view curvature. As an intermediate step it reconstructs silver grains positions inside emulsion layer to make a transition from 2D images to real 3D traces of a charged particle. This allows the algorithm to have no internal limits on the slope of microtracks being equally efficient on all angles. The LASSO has been used for about one year for mass production scanning of emulsion films of OPERA, Muon Radiography and also of films employed to study nuclear fragmentation of ion beams used in medical physics. More than 50000 cm2 of the emulsion surface have been analyzed during this period.

  13. Speckle averaging system for laser raster-scan image projection

    Science.gov (United States)

    Tiszauer, Detlev H.; Hackel, Lloyd A.

    1998-03-17

    The viewers' perception of laser speckle in a laser-scanned image projection system is modified or eliminated by the addition of an optical deflection system that effectively presents a new speckle realization at each point on the viewing screen to each viewer for every scan across the field. The speckle averaging is accomplished without introduction of spurious imaging artifacts.

  14. DNA barcoding of catfish: species authentication and phylogenetic assessment.

    Directory of Open Access Journals (Sweden)

    Li Lian Wong

    Full Text Available As the global market for fisheries and aquaculture products expands, mislabeling of these products has become a growing concern in the food safety arena. Molecular species identification techniques hold the potential for rapid, accurate assessment of proper labeling. Here we developed and evaluated DNA barcodes for use in differentiating United States domestic and imported catfish species. First, we sequenced 651 base-pair barcodes from the cytochrome oxidase I (COI gene from individuals of 9 species (and an Ictalurid hybrid of domestic and imported catfish in accordance with standard DNA barcoding protocols. These included domestic Ictalurid catfish, and representative imported species from the families of Clariidae and Pangasiidae. Alignment of individual sequences from within a given species revealed highly consistent barcodes (98% similarity on average. These alignments allowed the development and analyses of consensus barcode sequences for each species and comparison with limited sequences in public databases (GenBank and Barcode of Life Data Systems. Validation tests carried out in blinded studies and with commercially purchased catfish samples (both frozen and fresh revealed the reliability of DNA barcoding for differentiating between these catfish species. The developed protocols and consensus barcodes are valuable resources as increasing market and governmental scrutiny is placed on catfish and other fisheries and aquaculture products labeling in the United States.

  15. DNA barcodes for ecology, evolution, and conservation.

    Science.gov (United States)

    Kress, W John; García-Robledo, Carlos; Uriarte, Maria; Erickson, David L

    2015-01-01

    The use of DNA barcodes, which are short gene sequences taken from a standardized portion of the genome and used to identify species, is entering a new phase of application as more and more investigations employ these genetic markers to address questions relating to the ecology and evolution of natural systems. The suite of DNA barcode markers now applied to specific taxonomic groups of organisms are proving invaluable for understanding species boundaries, community ecology, functional trait evolution, trophic interactions, and the conservation of biodiversity. The application of next-generation sequencing (NGS) technology will greatly expand the versatility of DNA barcodes across the Tree of Life, habitats, and geographies as new methodologies are explored and developed. Published by Elsevier Ltd.

  16. Scanning SQUID microscopy for magnetic flux systems

    CERN Document Server

    Suzuki, J I; Hata, Y

    2003-01-01

    Recently, vortices confined into micro-scale superconductors with shapes like a disk, triangle, square, etc., have attracted much attention because of the quantum phase transition of the self-organized vortex arrangement occurring within such geometrical constraints. Such a transition can be observed using a scanning SQUID microscope with high spatial resolution. We have successfully improved spatial resolution by incorporating a microfabrication technique that reduces both the size of the pick-up coil of the micro DC-SQUID and the standoff distance between the pick-up coil and the sample surface. Using this microscope, we have studied vortex arrangements in micro-scale superconductors made of Nb and YBa sub 2 Cu sub 3 O sub 7 sub - subdelta films with various sizes and geometrical shapes. A peculiar oscillating behavior of diamagnetic magnetization corresponding to the particular vortex state was observed.

  17. Rapid scanning system for fuel drawers

    Science.gov (United States)

    Caldwell, J.T.; Fehlau, P.E.; France, S.W.

    A nondestructive method for uniquely distinguishing among and quantifying the mass of individual fuel plates in situ in fuel drawers utilized in nuclear reactors is described. The method is both rapid and passive, eliminating the personnel hazard of the commonly used irradiation techniques which require that the analysis be performed in proximity to an intense neutron source such as a reactor. In the present technique, only normally decaying nuclei are observed. This allows the analysis to be performed anywhere. This feature, combined with rapid scanning of a given fuel drawer (in approximately 30 s), and the computer data analysis allows the processing of large numbers of fuel drawers efficiently in the event of a loss alert.

  18. Compounding & dispensing errors before and after implementing barcode technology in a nuclear pharmacy.

    Science.gov (United States)

    Galbraith, Wendy; Shadid, Jill

    2012-01-01

    The objective of this study was to determine whether the incidence of compounding and dispensing errors changed significantly in a nuclear pharmacy after the pharmacy adopted a barcode assistance system. Nuclear pharmacy dispensing errors are extremely low compared to that of busy traditional pharmacies, but there is no data available describing the use of bar-coding assistance on the rate of dispensing errors in nuclear pharmacy. A retrospective review of dispensing errors pre-barcode assistance system implementation (2001 through 2004) and post-barcode assistance system implementation (February 2005 through 2009) was conducted using data from a nuclear pharmacy that dispenses approximately 500 prescriptions per day to nuclear medicine clinics and hospitals. Data was obtained from pharmacy error logs filed by the pharmacy as reported by an end user receiving the compounded preparation or the pharmacist having recognized the error before it reached the end user. Dispensing errors were defined as any deviation in the dispensed preparation from the prescribed order. Categories identified as incorrect were: dosage, drug, volume, procedure, patient, and delivery destination. Implementation of the barcode assistance system included installation of computers, software, barcoding devices, and training of personnel. The barcode assistance system provided barcodes for each compounding component, final preparation, syringe label, prescription, and shipping material. The barcode assistant system communicated directly with the dose calibrator, enabling the dose calibrator settings to automatically change according to time of administration and isotope required. The average error rate pre- and post-barcode assistance system was 0.012% and 0.002%, respectively (Pdispensing errors: wrong dosage (60%) and wrong drug (28%). Post-barcode assistance system, the major category was delivery destination (90%). The results suggest that the barcode assistance system has been instrumental

  19. Provider risk factors for medication administration error alerts: analyses of a large-scale closed-loop medication administration system using RFID and barcode.

    Science.gov (United States)

    Hwang, Yeonsoo; Yoon, Dukyong; Ahn, Eun Kyoung; Hwang, Hee; Park, Rae Woong

    2016-12-01

    To determine the risk factors and rate of medication administration error (MAE) alerts by analyzing large-scale medication administration data and related error logs automatically recorded in a closed-loop medication administration system using radio-frequency identification and barcodes. The subject hospital adopted a closed-loop medication administration system. All medication administrations in the general wards were automatically recorded in real-time using radio-frequency identification, barcodes, and hand-held point-of-care devices. MAE alert logs recorded during a full 1 year of 2012. We evaluated risk factors for MAE alerts including administration time, order type, medication route, the number of medication doses administered, and factors associated with nurse practices by logistic regression analysis. A total of 2 874 539 medication dose records from 30 232 patients (882.6 patient-years) were included in 2012. We identified 35 082 MAE alerts (1.22% of total medication doses). The MAE alerts were significantly related to administration at non-standard time [odds ratio (OR) 1.559, 95% confidence interval (CI) 1.515-1.604], emergency order (OR 1.527, 95%CI 1.464-1.594), and the number of medication doses administered (OR 0.993, 95%CI 0.992-0.993). Medication route, nurse's employment duration, and working schedule were also significantly related. The MAE alert rate was 1.22% over the 1-year observation period in the hospital examined in this study. The MAE alerts were significantly related to administration time, order type, medication route, the number of medication doses administered, nurse's employment duration, and working schedule. The real-time closed-loop medication administration system contributed to improving patient safety by preventing potential MAEs. Copyright © 2016 John Wiley & Sons, Ltd. Copyright © 2016 John Wiley & Sons, Ltd.

  20. Replacing Sanger with Next Generation Sequencing to improve coverage and quality of reference DNA barcodes for plants.

    Science.gov (United States)

    Wilkinson, Mike J; Szabo, Claudia; Ford, Caroline S; Yarom, Yuval; Croxford, Adam E; Camp, Amanda; Gooding, Paul

    2017-04-12

    We estimate the global BOLD Systems database holds core DNA barcodes (rbcL + matK) for about 15% of land plant species and that comprehensive species coverage is still many decades away. Interim performance of the resource is compromised by variable sequence overlap and modest information content within each barcode. Our model predicts that the proportion of species-unique barcodes reduces as the database grows and that 'false' species-unique barcodes remain >5% until the database is almost complete. We conclude the current rbcL + matK barcode is unfit for purpose. Genome skimming and supplementary barcodes could improve diagnostic power but would slow new barcode acquisition. We therefore present two novel Next Generation Sequencing protocols (with freeware) capable of accurate, massively parallel de novo assembly of high quality DNA barcodes of >1400 bp. We explore how these capabilities could enhance species diagnosis in the coming decades.

  1. Computerized hydraulic scanning system for quantitative non destructive examination

    International Nuclear Information System (INIS)

    Gundtoft, H.E.

    1982-01-01

    A hydraulic scanning system with five degrees of freedom is described. It is primarily designed as a universal system for fast and accurate ultrasonic inspection of materials for their internal variation in properties. The whole system is controlled by a minicomputer which also is used for evaluating and presenting of the results of the inspection. (author)

  2. A Multicounter System for Scanning Ultra-Low-Level Radiochromatograms

    DEFF Research Database (Denmark)

    Bøtter-Jensen, Lars; Hansen, Heinz Johs. Max; Theodorsson, P.

    1977-01-01

    A multicounter system consisting of an integrated array of flow counters for the scanning of ultra-low-level radioactivity on paper and thin-layer chromatograms was developed. Experience with routine measurements over a prolonged period has proved the advantages of this system over other systems...

  3. A surface refractive index scanning system and method

    DEFF Research Database (Denmark)

    2015-01-01

    The invention relates to a surface refractive index scanning system for characterization of a sample. The system comprises a grating device for holding or receiving the sample, the device comprising at least a first grating region having a first grating width along a transverse direction, and a s......The invention relates to a surface refractive index scanning system for characterization of a sample. The system comprises a grating device for holding or receiving the sample, the device comprising at least a first grating region having a first grating width along a transverse direction...

  4. DNA Barcoding Identifies Argentine Fishes from Marine and Brackish Waters

    Science.gov (United States)

    Mabragaña, Ezequiel; Díaz de Astarloa, Juan Martín; Hanner, Robert; Zhang, Junbin; González Castro, Mariano

    2011-01-01

    Background DNA barcoding has been advanced as a promising tool to aid species identification and discovery through the use of short, standardized gene targets. Despite extensive taxonomic studies, for a variety of reasons the identification of fishes can be problematic, even for experts. DNA barcoding is proving to be a useful tool in this context. However, its broad application is impeded by the need to construct a comprehensive reference sequence library for all fish species. Here, we make a regional contribution to this grand challenge by calibrating the species discrimination efficiency of barcoding among 125 Argentine fish species, representing nearly one third of the known fauna, and examine the utility of these data to address several key taxonomic uncertainties pertaining to species in this region. Methodology/Principal Findings Specimens were collected and morphologically identified during crusies conducted between 2005 and 2008. The standard BARCODE fragment of COI was amplified and bi-directionally sequenced from 577 specimens (mean of 5 specimens/species), and all specimens and sequence data were archived and interrogated using analytical tools available on the Barcode of Life Data System (BOLD; www.barcodinglife.org). Nearly all species exhibited discrete clusters of closely related haplogroups which permitted the discrimination of 95% of the species (i.e. 119/125) examined while cases of shared haplotypes were detected among just three species-pairs. Notably, barcoding aided the identification of a new species of skate, Dipturus argentinensis, permitted the recognition of Genypterus brasiliensis as a valid species and questions the generic assignment of Paralichthys isosceles. Conclusions/Significance This study constitutes a significant contribution to the global barcode reference sequence library for fishes and demonstrates the utility of barcoding for regional species identification. As an independent assessment of alpha taxonomy, barcodes provide

  5. DNA barcoding identifies Argentine fishes from marine and brackish waters.

    Directory of Open Access Journals (Sweden)

    Ezequiel Mabragaña

    Full Text Available BACKGROUND: DNA barcoding has been advanced as a promising tool to aid species identification and discovery through the use of short, standardized gene targets. Despite extensive taxonomic studies, for a variety of reasons the identification of fishes can be problematic, even for experts. DNA barcoding is proving to be a useful tool in this context. However, its broad application is impeded by the need to construct a comprehensive reference sequence library for all fish species. Here, we make a regional contribution to this grand challenge by calibrating the species discrimination efficiency of barcoding among 125 Argentine fish species, representing nearly one third of the known fauna, and examine the utility of these data to address several key taxonomic uncertainties pertaining to species in this region. METHODOLOGY/PRINCIPAL FINDINGS: Specimens were collected and morphologically identified during crusies conducted between 2005 and 2008. The standard BARCODE fragment of COI was amplified and bi-directionally sequenced from 577 specimens (mean of 5 specimens/species, and all specimens and sequence data were archived and interrogated using analytical tools available on the Barcode of Life Data System (BOLD; www.barcodinglife.org. Nearly all species exhibited discrete clusters of closely related haplogroups which permitted the discrimination of 95% of the species (i.e. 119/125 examined while cases of shared haplotypes were detected among just three species-pairs. Notably, barcoding aided the identification of a new species of skate, Dipturus argentinensis, permitted the recognition of Genypterus brasiliensis as a valid species and questions the generic assignment of Paralichthys isosceles. CONCLUSIONS/SIGNIFICANCE: This study constitutes a significant contribution to the global barcode reference sequence library for fishes and demonstrates the utility of barcoding for regional species identification. As an independent assessment of alpha

  6. Achieving Optimal High Resolution In Galvanometric Scanning Systems

    Science.gov (United States)

    Montagu, Jean I.

    1986-05-01

    This paper discusses methods of achieving the optimum in high resolution galvanometric scanning. When scanning systems have problems of repeatability, jitter, and wobble, the difficulties are often caused by inadequate mirror design, bonding, and/or alignment and the dynamic forces engendered by the driving torque. These issues are examined, and integral metal mirror mounts are compared with the conventional composite mirrors bonded to metal mounts. Galvanometer bearing suspension and drive electronics and how they relate to optimal high resolution are also addressed.

  7. Optics designs and system MTF for laser scanning displays

    Science.gov (United States)

    Urey, Hakan; Nestorovic, Ned; Ng, Baldwin S.; Gross, Abraham A.

    1999-07-01

    The Virtual Retinal DisplayTM (VRDTM) technology is a new display technology being developed at Microvision Inc. The displayed image is scanned onto the viewer's retina using low- power red, green, and blue light sources. Microvision's proprietary miniaturized scanner designs make VRD system very well suited for head-mounted displays. In this paper we discuss some of the advantages of the VRD technology, various ocular designs for HMD and other applications, and details of constructing a system MTF budget for laser scanning systems that includes electronics, modulators, scanners, and optics.

  8. [Moving Mirror Scanning System Based on the Flexible Hinge Support].

    Science.gov (United States)

    Xie, Fei; Feng, Fei; Wang, Fu-bei; Wu, Qiong-shui; Zeng, Li-bo

    2015-08-01

    In order to improve moving mirror drive of Fourier transform infrared spectrometer, we design a dynamic scanning system based on flexible hinge support. Using the flexible hinge support way and the voice coil motor drive mode. Specifically, Using right Angle with high accuracy high stability type flexible hinge support mechanism support moving mirror, dynamic mirror can be moved forward and backward driven by voice coil motor reciprocating motion, DSP control system to control the moving mirror at a constant speed. The experimental results show that the designed of moving mirror scanning system has advantages of stability direction, speed stability, superior seismic performance.

  9. Application Research of QRCode Barcode in Validation of Express Delivery

    Science.gov (United States)

    Liu, Zhihai; Zeng, Qingliang; Wang, Chenglong; Lu, Qing

    The barcode technology has become an important way in the field of information input and identify automatically. With the outstanding features of big storage capacity, secure, rich encoding character set and fast decoding, the two-dimensional(2D) QRcode(Quick Response Barcode) has become an important choice of commerce barcode. The development of wireless communications technology and the popularization and application of mobile device has set the foundation of 2D barcode used in business. In this paper, the characteristics and the compositions of 2D QRcode are described, the secure validation workflows and contents of QRcode in goods express delivery are discussed, the encoding process of QRcode is showed, and the system framework is analyzed and established. At last, the system compositions and functions of each part are discussed.

  10. Slit scan radiographic system for intermediate size rocket motors

    Science.gov (United States)

    Bernardi, Richard T.; Waters, David D.

    1992-12-01

    The development of slit-scan radiography capability for the NASA Advanced Computed Tomography Inspection System (ACTIS) computed tomography (CT) scanner at MSFC is discussed. This allows for tangential case interface (bondline) inspection at 2 MeV of intermediate-size rocket motors like the Hawk. Motorized mounting fixture hardware was designed, fabricated, installed, and tested on ACTIS. The ACTIS linear array of x-ray detectors was aligned parallel to the tangent line of a horizontal Hawk motor case. A 5 mm thick x-ray fan beam was used. Slit-scan images were produced with continuous rotation of a horizontal Hawk motor. Image features along Hawk motor case interfaces were indicated. A motorized exit cone fixture for ACTIS slit-scan inspection was also provided. The results of this SBIR have shown that slit scanning is an alternative imaging technique for case interface inspection. More data is required to qualify the technique for bondline inspection.

  11. DNA barcoding Bromeliaceae: achievements and pitfalls.

    Directory of Open Access Journals (Sweden)

    Vitor Hugo Maia

    Full Text Available BACKGROUND: DNA barcoding has been successfully established in animals as a tool for organismal identification and taxonomic clarification. Slower nucleotide substitution rates in plant genomes have made the selection of a DNA barcode for land plants a much more difficult task. The Plant Working Group of the Consortium for the Barcode of Life (CBOL recommended the two-marker combination rbcL/matK as a pragmatic solution to a complex trade-off between universality, sequence quality, discrimination, and cost. METHODOLOGY/PRINCIPAL FINDINGS: It is expected that a system based on any one, or a small number of plastid genes will fail within certain taxonomic groups with low amounts of plastid variation, while performing well in others. We tested the effectiveness of the proposed CBOL Plant Working Group barcoding markers for land plants in identifying 46 bromeliad species, a group rich in endemic species from the endangered Brazilian Atlantic Rainforest. Although we obtained high quality sequences with the suggested primers, species discrimination in our data set was only 43.48%. Addition of a third marker, trnH-psbA, did not show significant improvement. This species identification failure in Bromeliaceaecould also be seen in the analysis of the GenBank's matK data set. Bromeliaceae's sequence divergence was almost three times lower than the observed for Asteraceae and Orchidaceae. This low variation rate also resulted in poorly resolved tree topologies. Among the three Bromeliaceae subfamilies sampled, Tillandsioideae was the only one recovered as a monophyletic group with high bootstrap value (98.6%. Species paraphyly was a common feature in our sampling. CONCLUSIONS/SIGNIFICANCE: Our results show that although DNA barcoding is an important tool for biodiversity assessment, it tends to fail in taxonomy complicated and recently diverged plant groups, such as Bromeliaceae. Additional research might be needed to develop markers capable to

  12. DNA barcoding Bromeliaceae: achievements and pitfalls.

    Science.gov (United States)

    Maia, Vitor Hugo; Mata, Camila Souza da; Franco, Luciana Ozório; Cardoso, Mônica Aires; Cardoso, Sérgio Ricardo Sodré; Hemerly, Adriana Silva; Ferreira, Paulo Cavalcanti Gomes

    2012-01-01

    DNA barcoding has been successfully established in animals as a tool for organismal identification and taxonomic clarification. Slower nucleotide substitution rates in plant genomes have made the selection of a DNA barcode for land plants a much more difficult task. The Plant Working Group of the Consortium for the Barcode of Life (CBOL) recommended the two-marker combination rbcL/matK as a pragmatic solution to a complex trade-off between universality, sequence quality, discrimination, and cost. It is expected that a system based on any one, or a small number of plastid genes will fail within certain taxonomic groups with low amounts of plastid variation, while performing well in others. We tested the effectiveness of the proposed CBOL Plant Working Group barcoding markers for land plants in identifying 46 bromeliad species, a group rich in endemic species from the endangered Brazilian Atlantic Rainforest. Although we obtained high quality sequences with the suggested primers, species discrimination in our data set was only 43.48%. Addition of a third marker, trnH-psbA, did not show significant improvement. This species identification failure in Bromeliaceaecould also be seen in the analysis of the GenBank's matK data set. Bromeliaceae's sequence divergence was almost three times lower than the observed for Asteraceae and Orchidaceae. This low variation rate also resulted in poorly resolved tree topologies. Among the three Bromeliaceae subfamilies sampled, Tillandsioideae was the only one recovered as a monophyletic group with high bootstrap value (98.6%). Species paraphyly was a common feature in our sampling. Our results show that although DNA barcoding is an important tool for biodiversity assessment, it tends to fail in taxonomy complicated and recently diverged plant groups, such as Bromeliaceae. Additional research might be needed to develop markers capable to discriminate species in these complex botanical groups.

  13. Building a DNA barcode library of Alaska's non-marine arthropods.

    Science.gov (United States)

    Sikes, Derek S; Bowser, Matthew; Morton, John M; Bickford, Casey; Meierotto, Sarah; Hildebrandt, Kyndall

    2017-03-01

    Climate change may result in ecological futures with novel species assemblages, trophic mismatch, and mass extinction. Alaska has a limited taxonomic workforce to address these changes. We are building a DNA barcode library to facilitate a metabarcoding approach to monitoring non-marine arthropods. Working with the Canadian Centre for DNA Barcoding, we obtained DNA barcodes from recently collected and authoritatively identified specimens in the University of Alaska Museum (UAM) Insect Collection and the Kenai National Wildlife Refuge collection. We submitted tissues from 4776 specimens, of which 81% yielded DNA barcodes representing 1662 species and 1788 Barcode Index Numbers (BINs), of primarily terrestrial, large-bodied arthropods. This represents 84% of the species available for DNA barcoding in the UAM Insect Collection. There are now 4020 Alaskan arthropod species represented by DNA barcodes, after including all records in Barcode of Life Data Systems (BOLD) of species that occur in Alaska - i.e., 48.5% of the 8277 Alaskan, non-marine-arthropod, named species have associated DNA barcodes. An assessment of the identification power of the library in its current state yielded fewer species-level identifications than expected, but the results were not discouraging. We believe we are the first to deliberately begin development of a DNA barcode library of the entire arthropod fauna for a North American state or province. Although far from complete, this library will become increasingly valuable as more species are added and costs to obtain DNA sequences fall.

  14. P-scan system for ultrasonic weld inspection

    International Nuclear Information System (INIS)

    Nielsen, N.

    1981-01-01

    A projection image scanning (P-scan) system based on an advanced fully microprocessor-controlled ultrasonic equipment and used to analyse and record echo signals from welded joints is described. The echoes from weld defects are measured with one dB resolution and are recorded together with the corresponding defect position. The system is ideally suited for in-service and automatic weld inspection and gives a very high degree of re-producibility. Some typical inspections are described. (U.K.)

  15. Digital adaptive optics line-scanning confocal imaging system

    Science.gov (United States)

    Liu, Changgeng; Kim, Myung K.

    2015-01-01

    Abstract. A digital adaptive optics line-scanning confocal imaging (DAOLCI) system is proposed by applying digital holographic adaptive optics to a digital form of line-scanning confocal imaging system. In DAOLCI, each line scan is recorded by a digital hologram, which allows access to the complex optical field from one slice of the sample through digital holography. This complex optical field contains both the information of one slice of the sample and the optical aberration of the system, thus allowing us to compensate for the effect of the optical aberration, which can be sensed by a complex guide star hologram. After numerical aberration compensation, the corrected optical fields of a sequence of line scans are stitched into the final corrected confocal image. In DAOLCI, a numerical slit is applied to realize the confocality at the sensor end. The width of this slit can be adjusted to control the image contrast and speckle noise for scattering samples. DAOLCI dispenses with the hardware pieces, such as Shack–Hartmann wavefront sensor and deformable mirror, and the closed-loop feedbacks adopted in the conventional adaptive optics confocal imaging system, thus reducing the optomechanical complexity and cost. Numerical simulations and proof-of-principle experiments are presented that demonstrate the feasibility of this idea. PMID:26140334

  16. Automation and workflow considerations for embedding Digimarc Barcodes at scale

    Science.gov (United States)

    Rodriguez, Tony; Haaga, Don; Calhoon, Sean

    2015-03-01

    The Digimarc® Barcode is a digital watermark applied to packages and variable data labels that carries GS1 standard GTIN-14 data traditionally carried by a 1-D barcode. The Digimarc Barcode can be read with smartphones and imaging-based barcode readers commonly used in grocery and retail environments. Using smartphones, consumers can engage with products and retailers can materially increase the speed of check-out, increasing store margins and providing a better experience for shoppers. Internal testing has shown an average of 53% increase in scanning throughput, enabling 100's of millions of dollars in cost savings [1] for retailers when deployed at scale. To get to scale, the process of embedding a digital watermark must be automated and integrated within existing workflows. Creating the tools and processes to do so represents a new challenge for the watermarking community. This paper presents a description and an analysis of the workflow implemented by Digimarc to deploy the Digimarc Barcode at scale. An overview of the tools created and lessons learned during the introduction of technology to the market are provided.

  17. A multipoint feedback control system for scanned focussed ultrasound hyperthermia

    International Nuclear Information System (INIS)

    Johnson, C.; Kress, R.; Roemer, R.; Hynynen, K.

    1987-01-01

    A multipoint feedback control system has been developed and tested for use with a scanned focussed ultrasound hyperthermia system. Extensive in-vivo tests (using a perfused organ model) have been made to evaluate the basic performance characteristics of the feedback control scheme for control of temperature in perfused media. The results of these tests are presented and compared with the predictions of a simulation routine. The control scheme was also tested in vivo using dogs' thighs and kidneys. Thigh experiments show the control scheme responds well to the affects of vasodilation and is able to maintain the targeted temperatures. In kidney experiments, where the rate of perfusion was controllable, the power adjusting algorithm successfully maintained uniform temperature distributions across regions of varying rates of perfusion. As a conclusion, the results show that this multipoint feedback controller scheme induces uniform temperature distributions when used with scanned focussed ultrasound systems

  18. Dose error analysis for a scanned proton beam delivery system

    International Nuclear Information System (INIS)

    Coutrakon, G; Wang, N; Miller, D W; Yang, Y

    2010-01-01

    All particle beam scanning systems are subject to dose delivery errors due to errors in position, energy and intensity of the delivered beam. In addition, finite scan speeds, beam spill non-uniformities, and delays in detector, detector electronics and magnet responses will all contribute errors in delivery. In this paper, we present dose errors for an 8 x 10 x 8 cm 3 target of uniform water equivalent density with 8 cm spread out Bragg peak and a prescribed dose of 2 Gy. Lower doses are also analyzed and presented later in the paper. Beam energy errors and errors due to limitations of scanning system hardware have been included in the analysis. By using Gaussian shaped pencil beams derived from measurements in the research room of the James M Slater Proton Treatment and Research Center at Loma Linda, CA and executing treatment simulations multiple times, statistical dose errors have been calculated in each 2.5 mm cubic voxel in the target. These errors were calculated by delivering multiple treatments to the same volume and calculating the rms variation in delivered dose at each voxel in the target. The variations in dose were the result of random beam delivery errors such as proton energy, spot position and intensity fluctuations. The results show that with reasonable assumptions of random beam delivery errors, the spot scanning technique yielded an rms dose error in each voxel less than 2% or 3% of the 2 Gy prescribed dose. These calculated errors are within acceptable clinical limits for radiation therapy.

  19. Development of a segmented gamma ray scanning system

    International Nuclear Information System (INIS)

    Zhu Rongbao; Tan Yajun; Yuan Xiaoxin

    1994-01-01

    A segmented gamma ray scanning system is developed for the purposes of non-destructive assay of the contents of uranium, plutonium or fission products existing in packed low density or medium density nuclear residuals, scrapes or wastes. The near field three-dimensional model for computing CF(AT) is used for cylindrical sample and container, the system developed consists of a transmission source wheel, a rotatable scanning plate, a beam shutter, and annular shielding body, stepping motors and control system, HPGe detector, nuclear electronics and computer. The full scale scanning of samples, spectrum accumulation and data reduction could be fulfilled automatically according to preset standard procedures. The radioisotopes of 169 Yb and 75 Se and used as the transmission sources for assaying 235 U and potential 239 Pu respectively. The calibration experiments using 1 liter solution sample of 192 Ir and 235 U is performed. The standard deviations were obtained for 192 Ir γ rays of 295 keV, 308 keV and 316 keV are +- 0.41%, +- 0.29% and +-0.42% respectively. The standard divination for 235 U 185 keV γ ray is +- 0.62%

  20. Power Measurements for Microvision, Inc., Aircrew Integrated Helmet System Scanning Laser Helmet-Mounted Display

    National Research Council Canada - National Science Library

    Rash, Clarence

    2002-01-01

    ...) technology based on scanning lasers. Under this program, Microvision, Inc., Bothell, Washington, has developed a scanning laser HMD prototype for use with the Aircrew Integrated Helmet System (AIHS...

  1. Line-scan system for continuous hand authentication

    Science.gov (United States)

    Liu, Xiaofeng; Kong, Lingsheng; Diao, Zhihui; Jia, Ping

    2017-03-01

    An increasing number of heavy machinery and vehicles have come into service, giving rise to a significant concern over protecting these high-security systems from misuse. Conventionally, authentication performed merely at the initial login may not be sufficient for detecting intruders throughout the operating session. To address this critical security flaw, a line-scan continuous hand authentication system with the appearance of an operating rod is proposed. Given that the operating rod is occupied throughout the operating period, it can be a possible solution for unobtrusively recording the personal characteristics for continuous monitoring. The ergonomics in the physiological and psychological aspects are fully considered. Under the shape constraints, a highly integrated line-scan sensor, a controller unit, and a gear motor with encoder are utilized. This system is suitable for both the desktop and embedded platforms with a universal serial bus interface. The volume of the proposed system is smaller than 15% of current multispectral area-based camera systems. Based on experiments on a database with 4000 images from 200 volunteers, a competitive equal error rate of 0.1179% is achieved, which is far more accurate than the state-of-the-art continuous authentication systems using other modalities.

  2. Cardiac imaging systems and methods employing computerized tomographic scanning

    International Nuclear Information System (INIS)

    Richey, J.B.; Wake, R.H.; Walters, R.G.; Hunt, W.F.; Cool, S.L.

    1980-01-01

    The invention relates to cardiac imaging systems and methods employing computerised tomographic scanning. Apparatus is described which allows an image of the radiation attenuation of the heart at a desired phase of the cardiac cycle. The patients ECG signal can be used in a transverse-and-rotate type CT scanner as a time base, so that the beam reaches the heart at a desired phase of the cardiac cycle, or, in a purely rotational-type CT scanner continuously generated scan data is only stored for corresponding phases of successive cardiac cycles. Alternatively, gating of the beams themselves by shuttering or switching the power supply can be controlled by the ECG signal. A pacemaker is used to stabilize the cardiac period. Also used is a system for recognising unacceptable variations in the cardiac period and discarding corresponding scan data. In a transverse-and-rotate type fan-beam CT scanner, the effective beam width is narrowed to reduce the duration of the traverse of the heart. (U.K.)

  3. On-line pressure measurement using scanning systems

    International Nuclear Information System (INIS)

    Morss, A.G.; Watson, A.P.

    1978-08-01

    Data collection methods can be improved significantly by using pressure scanning systems in conjunction with transducers for the measurement of pressure distribution in fluid flow rigs. However, the response of pressure transducers to the slight random pressure fluctuations that occur in practice can cause some measurement problems, especially for accurate work. The nature of these pressure fluctuations is examined and suitable analysis techniques are recommended. Results obtained using these techniques are presented. It is concluded that by using the correct techniques pressure transducer systems can be used to measure pressure distributions accurately and are sufficiently sensitive to measure very small systematic effects with great precision. (author)

  4. An integrated system for large scale scanning of nuclear emulsions

    Energy Technology Data Exchange (ETDEWEB)

    Bozza, Cristiano, E-mail: kryss@sa.infn.it [University of Salerno and INFN, via Ponte Don Melillo, Fisciano 84084 (Italy); D’Ambrosio, Nicola [Laboratori Nazionali del Gran Sasso, S.S. 17 BIS km 18.910, Assergi (AQ) 67010 (Italy); De Lellis, Giovanni [University of Napoli and INFN, Complesso Universitario di Monte Sant' Angelo, via Cintia Ed. G, Napoli 80126 (Italy); De Serio, Marilisa [University of Bari and INFN, via E. Orabona 4, Bari 70125 (Italy); Di Capua, Francesco [INFN Napoli, Complesso Universitario di Monte Sant' Angelo, via Cintia Ed. G, Napoli 80126 (Italy); Di Crescenzo, Antonia [University of Napoli and INFN, Complesso Universitario di Monte Sant' Angelo, via Cintia Ed. G, Napoli 80126 (Italy); Di Ferdinando, Donato [INFN Bologna, viale B. Pichat 6/2, Bologna 40127 (Italy); Di Marco, Natalia [Laboratori Nazionali del Gran Sasso, S.S. 17 BIS km 18.910, Assergi (AQ) 67010 (Italy); Esposito, Luigi Salvatore [Laboratori Nazionali del Gran Sasso, now at CERN, Geneva (Switzerland); Fini, Rosa Anna [INFN Bari, via E. Orabona 4, Bari 70125 (Italy); Giacomelli, Giorgio [University of Bologna and INFN, viale B. Pichat 6/2, Bologna 40127 (Italy); Grella, Giuseppe [University of Salerno and INFN, via Ponte Don Melillo, Fisciano 84084 (Italy); Ieva, Michela [University of Bari and INFN, via E. Orabona 4, Bari 70125 (Italy); Kose, Umut [INFN Padova, via Marzolo 8, Padova (PD) 35131 (Italy); Longhin, Andrea; Mauri, Nicoletta [INFN Laboratori Nazionali di Frascati, via E. Fermi 40, Frascati (RM) 00044 (Italy); Medinaceli, Eduardo [University of Padova and INFN, via Marzolo 8, Padova (PD) 35131 (Italy); Monacelli, Piero [University of L' Aquila and INFN, via Vetoio Loc. Coppito, L' Aquila (AQ) 67100 (Italy); Muciaccia, Maria Teresa; Pastore, Alessandra [University of Bari and INFN, via E. Orabona 4, Bari 70125 (Italy); and others

    2013-03-01

    The European Scanning System, developed to analyse nuclear emulsions at high speed, has been completed with the development of a high level software infrastructure to automate and support large-scale emulsion scanning. In one year, an average installation is capable of performing data-taking and online analysis on a total surface ranging from few m{sup 2} to tens of m{sup 2}, acquiring many billions of tracks, corresponding to several TB. This paper focuses on the procedures that have been implemented and on their impact on physics measurements. The system proved robust, reliable, fault-tolerant and user-friendly, and seldom needs assistance. A dedicated relational Data Base system is the backbone of the whole infrastructure, storing data themselves and not only catalogues of data files, as in common practice, being a unique case in high-energy physics DAQ systems. The logical organisation of the system is described and a summary is given of the physics measurement that are readily available by automated processing.

  5. Wolbachia and DNA barcoding insects: patterns, potential, and problems.

    Directory of Open Access Journals (Sweden)

    M Alex Smith

    Full Text Available Wolbachia is a genus of bacterial endosymbionts that impacts the breeding systems of their hosts. Wolbachia can confuse the patterns of mitochondrial variation, including DNA barcodes, because it influences the pathways through which mitochondria are inherited. We examined the extent to which these endosymbionts are detected in routine DNA barcoding, assessed their impact upon the insect sequence divergence and identification accuracy, and considered the variation present in Wolbachia COI. Using both standard PCR assays (Wolbachia surface coding protein--wsp, and bacterial COI fragments we found evidence of Wolbachia in insect total genomic extracts created for DNA barcoding library construction. When >2 million insect COI trace files were examined on the Barcode of Life Datasystem (BOLD Wolbachia COI was present in 0.16% of the cases. It is possible to generate Wolbachia COI using standard insect primers; however, that amplicon was never confused with the COI of the host. Wolbachia alleles recovered were predominantly Supergroup A and were broadly distributed geographically and phylogenetically. We conclude that the presence of the Wolbachia DNA in total genomic extracts made from insects is unlikely to compromise the accuracy of the DNA barcode library; in fact, the ability to query this DNA library (the database and the extracts for endosymbionts is one of the ancillary benefits of such a large scale endeavor--which we provide several examples. It is our conclusion that regular assays for Wolbachia presence and type can, and should, be adopted by large scale insect barcoding initiatives. While COI is one of the five multi-locus sequence typing (MLST genes used for categorizing Wolbachia, there is limited overlap with the eukaryotic DNA barcode region.

  6. Wolbachia and DNA Barcoding Insects: Patterns, Potential, and Problems

    Science.gov (United States)

    Smith, M. Alex; Bertrand, Claudia; Crosby, Kate; Eveleigh, Eldon S.; Fernandez-Triana, Jose; Fisher, Brian L.; Gibbs, Jason; Hajibabaei, Mehrdad; Hallwachs, Winnie; Hind, Katharine; Hrcek, Jan; Huang, Da-Wei; Janda, Milan; Janzen, Daniel H.; Li, Yanwei; Miller, Scott E.; Packer, Laurence; Quicke, Donald; Ratnasingham, Sujeevan; Rodriguez, Josephine; Rougerie, Rodolphe; Shaw, Mark R.; Sheffield, Cory; Stahlhut, Julie K.; Steinke, Dirk; Whitfield, James; Wood, Monty; Zhou, Xin

    2012-01-01

    Wolbachia is a genus of bacterial endosymbionts that impacts the breeding systems of their hosts. Wolbachia can confuse the patterns of mitochondrial variation, including DNA barcodes, because it influences the pathways through which mitochondria are inherited. We examined the extent to which these endosymbionts are detected in routine DNA barcoding, assessed their impact upon the insect sequence divergence and identification accuracy, and considered the variation present in Wolbachia COI. Using both standard PCR assays (Wolbachia surface coding protein – wsp), and bacterial COI fragments we found evidence of Wolbachia in insect total genomic extracts created for DNA barcoding library construction. When >2 million insect COI trace files were examined on the Barcode of Life Datasystem (BOLD) Wolbachia COI was present in 0.16% of the cases. It is possible to generate Wolbachia COI using standard insect primers; however, that amplicon was never confused with the COI of the host. Wolbachia alleles recovered were predominantly Supergroup A and were broadly distributed geographically and phylogenetically. We conclude that the presence of the Wolbachia DNA in total genomic extracts made from insects is unlikely to compromise the accuracy of the DNA barcode library; in fact, the ability to query this DNA library (the database and the extracts) for endosymbionts is one of the ancillary benefits of such a large scale endeavor – for which we provide several examples. It is our conclusion that regular assays for Wolbachia presence and type can, and should, be adopted by large scale insect barcoding initiatives. While COI is one of the five multi-locus sequence typing (MLST) genes used for categorizing Wolbachia, there is limited overlap with the eukaryotic DNA barcode region. PMID:22567162

  7. Minimum Detectable Activity for Tomographic Gamma Scanning System

    Energy Technology Data Exchange (ETDEWEB)

    Venkataraman, Ram [Canberra Industries (AREVA BDNM), Meriden, CT (United States); Smith, Susan [Canberra Industries (AREVA BDNM), Meriden, CT (United States); Kirkpatrick, J. M. [Canberra Industries (AREVA BDNM), Meriden, CT (United States); Croft, Stephen [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)

    2015-01-01

    For any radiation measurement system, it is useful to explore and establish the detection limits and a minimum detectable activity (MDA) for the radionuclides of interest, even if the system is to be used at far higher values. The MDA serves as an important figure of merit, and often a system is optimized and configured so that it can meet the MDA requirements of a measurement campaign. The non-destructive assay (NDA) systems based on gamma ray analysis are no exception and well established conventions, such the Currie method, exist for estimating the detection limits and the MDA. However, the Tomographic Gamma Scanning (TGS) technique poses some challenges for the estimation of detection limits and MDAs. The TGS combines high resolution gamma ray spectrometry (HRGS) with low spatial resolution image reconstruction techniques. In non-imaging gamma ray based NDA techniques measured counts in a full energy peak can be used to estimate the activity of a radionuclide, independently of other counting trials. However, in the case of the TGS each “view” is a full spectral grab (each a counting trial), and each scan consists of 150 spectral grabs in the transmission and emission scans per vertical layer of the item. The set of views in a complete scan are then used to solve for the radionuclide activities on a voxel by voxel basis, over 16 layers of a 10x10 voxel grid. Thus, the raw count data are not independent trials any more, but rather constitute input to a matrix solution for the emission image values at the various locations inside the item volume used in the reconstruction. So, the validity of the methods used to estimate MDA for an imaging technique such as TGS warrant a close scrutiny, because the pair-counting concept of Currie is not directly applicable. One can also raise questions as to whether the TGS, along with other image reconstruction techniques which heavily intertwine data, is a suitable method if one expects to measure samples whose activities

  8. Local dynamic range compensation for scanning electron microscope imaging system.

    Science.gov (United States)

    Sim, K S; Huang, Y H

    2015-01-01

    This is the extended project by introducing the modified dynamic range histogram modification (MDRHM) and is presented in this paper. This technique is used to enhance the scanning electron microscope (SEM) imaging system. By comparing with the conventional histogram modification compensators, this technique utilizes histogram profiling by extending the dynamic range of each tile of an image to the limit of 0-255 range while retains its histogram shape. The proposed technique yields better image compensation compared to conventional methods. © Wiley Periodicals, Inc.

  9. Software requirements definition Shipping Cask Analysis System (SCANS)

    International Nuclear Information System (INIS)

    Johnson, G.L.; Serbin, R.

    1985-01-01

    The US Nuclear Regulatory Commission (NRC) staff reviews the technical adequacy of applications for certification of designs of shipping casks for spent nuclear fuel. In order to confirm an acceptable design, the NRC staff may perform independent calculations. The current NRC procedure for confirming cask design analyses is laborious and tedious. Most of the work is currently done by hand or through the use of a remote computer network. The time required to certify a cask can be long. The review process may vary somewhat with the engineer doing the reviewing. Similarly, the documentation on the results of the review can also vary with the reviewer. To increase the efficiency of this certification process, LLNL was requested to design and write an integrated set of user-oriented, interactive computer programs for a personal microcomputer. The system is known as the NRC Shipping Cask Analysis System (SCANS). The computer codes and the software system supporting these codes are being developed and maintained for the NRC by LLNL. The objective of this system is generally to lessen the time and effort needed to review an application. Additionally, an objective of the system is to assure standardized methods and documentation of the confirmatory analyses used in the review of these cask designs. A software system should be designed based on NRC-defined requirements contained in a requirements document. The requirements document is a statement of a project's wants and needs as the users and implementers jointly understand them. The requirements document states the desired end products (i.e. WHAT's) of the project, not HOW the project provides them. This document describes the wants and needs for the SCANS system. 1 fig., 3 tabs

  10. Parallel beam scanning system for flatness measurements of thin plates

    Science.gov (United States)

    Fan, Kuang-Chao; Wu, John H.

    1993-09-01

    This paper describes the work to develop a Parallel Beam Scanning System (PBSS) for the non-contact measurement of surface flatness of thin plates. The PBSS consists of a He-Ne laser source having good pointing stability a scanner to create divergent scanning beams a large aplanatic meniscus lens to convert the divergent beams to parallel beams a linear stage to drive the testpiece to each sampling position a screen for the projection of reflected beams from the tested surface and an image processing unit to analyze the projected image. Due to the out-of-flatness of the surface the straight line formed by the incident parallel beams will be distorted and magnified on the screen as it is reflected from the tested surface. The stage then positions the testpiece step-by-step to carry out measurements in the line-by-line sequence. A CCD camera is employed to capture the image of the distorted line on the screen each time. With the proposed mathematical model the flatness data of the testpiece can be computed from the input image data. Experimental results by the use of this system have shown in good agreement with the results obtained from the coordinate measuring machine. This system can be applied to the flatness measurements of thin plates such as sheet metals sheet moulding compound (SMC) plates glass plates etc. which are difficult to measure by traditional methods.

  11. A Mobile Phone Application Enabling Visually Impaired Users to Find and Read Product Barcodes.

    Science.gov (United States)

    Tekin, Ender; Coughlan, James M

    2010-07-01

    While there are many barcode readers available for identifying products in a supermarket or at home on mobile phones (e.g., Red Laser iPhone app), such readers are inaccessible to blind or visually impaired persons because of their reliance on visual feedback from the user to center the barcode in the camera's field of view. We describe a mobile phone application that guides a visually impaired user to the barcode on a package in real-time using the phone's built-in video camera. Once the barcode is located by the system, the user is prompted with audio signals to bring the camera closer to the barcode until it can be resolved by the camera, which is then decoded and the corresponding product information read aloud using text-to-speech. Experiments with a blind volunteer demonstrate proof of concept of our system, which allowed the volunteer to locate barcodes which were then translated to product information that was announced to the user. We successfully tested a series of common products, as well as user-generated barcodes labeling household items that may not come with barcodes.

  12. FHWA scanning report on traffic management and traveler information systems : FHWA's Scanning Program

    Science.gov (United States)

    1997-11-01

    This report presents the findings of the study team on a Federal Highway Administration (FHWA) International Scanning Tour to the countries of Finland, Sweden, the Netherlands, and England. The tour was unique in that it represented the first time th...

  13. Currency verification by a 2D infrared barcode

    International Nuclear Information System (INIS)

    Schirripa Spagnolo, Giuseppe; Cozzella, Lorenzo; Simonetti, Carla

    2010-01-01

    Nowadays all the National Central Banks are continuously studying innovative anti-counterfeiting systems for banknotes. In this note, an innovative solution is proposed, which combines the potentiality of a hylemetric approach (methodology conceptually similar to biometry), based on notes' intrinsic characteristics, with a well-known and consolidated 2D barcode identification system. In particular, in this note we propose to extract from the banknotes a univocal binary control sequence (template) and insert an encrypted version of it in a barcode printed on the same banknote. For a more acceptable look and feel of a banknote, the superposed barcode can be stamped using IR ink that is visible to near-IR image sensors. This makes the banknote verification simpler. (technical design note)

  14. 76 FR 34871 - Mobile Barcode Promotion

    Science.gov (United States)

    2011-06-15

    .... The mobile barcodes must be used for marketing, promotional or educational purposes. They may not be... POSTAL SERVICE 39 CFR Part 111 Mobile Barcode Promotion AGENCY: Postal Service TM . ACTION: Final... and flats, and Standard Mail[reg] letters and flats bearing two-dimensional mobile barcodes. DATES...

  15. Improvement in two-dimensional barcode

    Indian Academy of Sciences (India)

    A lot of work has been already done to deal with such variations but acceptable results have not yet been achieved. The objective behind colour barcode is to increase the capacity to 3 fold as compared with 2D monochrome barcode. In this paper we proposed a novel approach that will increase the capacity of barcode ...

  16. Genetic Barcodes Facilitate Competitive Clonal Analyses In Vivo.

    Science.gov (United States)

    Aranyossy, Tim; Thielecke, Lars; Glauche, Ingmar; Fehse, Boris; Cornils, Kerstin

    2017-10-01

    Monitoring the fate of individual cell clones is an important task to better understand normal tissue regeneration, for example after hematopoietic stem cell (HSC) transplantation, but also cancerogenesis. Based on their integration into the host cell's genome, retroviral vectors are commonly used to stably mark target cells and their progeny. The development of genetic barcoding techniques has opened new possibilities to determine clonal composition and dynamics in great detail. A modular genetic barcode was recently introduced consisting of 32 variable positions (BC32) with a customized backbone, and its advantages were demonstrated with regard to barcode calling and quantification. The study presented applied the BC32 system in a complex in vivo situation, namely to analyze clonal reconstitution dynamics for HSC grafts consisting of up to three cell populations with distinguishable barcodes using different alpha- and lentiviral vectors. In a competitive transplantation setup, it was possible to follow the differently marked cell populations within individual animals. This enabled the clonal contribution of the different BC32 constructs during reconstitution and long-term hematopoiesis in the peripheral blood and the spatial distribution in bone marrow and spleen to be identified. Thus, it was demonstrated that the system allows the output of individually marked cells to be tracked in vivo and their influence on clonal dynamics to be analyzed. Successful application of the BC32 system in a complex, competitive in vivo situation provided proof-of-principle that its high complexity and the large Hamming distance between individual barcodes, combined with the easy customization, facilitate efficient and precise quantification, even without prior knowledge of individual barcode sequences. Importantly, simultaneous high-sensitivity analyses of different cell populations in single animals may significantly reduce numbers of animals required to investigate specific

  17. A METHOD OF SECURITY SCANNING OF CARRY-ON ITEMS, AND A CARRY-ON ITEMS SECURITY SCANNING SYSTEM

    DEFF Research Database (Denmark)

    2017-01-01

    A security scanning system (1) comprises a first stage module (3) having at least one X-ray source (6) and at least three first detectors (7) that are line-shaped and arranged in mutually different orientations and have at least dual energy resolution. A group of carry-on items (4) on a carrier...... are scanned simultaneously in the first stage module solely by transmission contrast radiography generating projections of two-dimensional image data. A processing device (9) reconstructs a 3D representation of the carry-on items and analyzes the 3D representation to determine whether further scanning...

  18. Potential DNA barcodes for Melilotus species based on five single loci and their combinations.

    Directory of Open Access Journals (Sweden)

    Fan Wu

    Full Text Available Melilotus, an annual or biennial herb, belongs to the tribe Trifolieae (Leguminosae and consists of 19 species. As an important green manure crop, diverse Melilotus species have different values as feed and medicine. To identify different Melilotus species, we examined the efficiency of five candidate regions as barcodes, including the internal transcribed spacer (ITS and two chloroplast loci, rbcL and matK, and two non-coding loci, trnH-psbA and trnL-F. In total, 198 individuals from 98 accessions representing 18 Melilotus species were sequenced for these five potential barcodes. Based on inter-specific divergence, we analysed sequences and confirmed that each candidate barcode was able to identify some of the 18 species. The resolution of a single barcode and its combinations ranged from 33.33% to 88.89%. Analysis of pairwise distances showed that matK+rbcL+trnL-F+trnH-psbA+ITS (MRTPI had the greatest value and rbcL the least. Barcode gap values and similarity value analyses confirmed these trends. The results indicated that an ITS region, successfully identifying 13 of 18 species, was the most appropriate single barcode and that the combination of all five potential barcodes identified 16 of the 18 species. We conclude that MRTPI is the most effective tool for Melilotus species identification. Taking full advantage of the barcode system, a clear taxonomic relationship can be applied to identify Melilotus species and enhance their practical production.

  19. Calibration technology in application of robot-laser scanning system

    Science.gov (United States)

    Ren, YongJie; Yin, ShiBin; Zhu, JiGui

    2012-11-01

    A system composed of laser sensor and 6-DOF industrial robot is proposed to obtain complete three-dimensional (3-D) information of the object surface. Suitable for the different combining ways of laser sensor and robot, a new method to calibrate the position and pose between sensor and robot is presented. By using a standard sphere with known radius as a reference tool, the rotation and translation matrices between the laser sensor and robot are computed, respectively in two steps, so that many unstable factors introduced in conventional optimization methods can be avoided. The experimental results show that the accuracy of the proposed calibration method can be achieved up to 0.062 mm. The calibration method is also implemented into the automated robot scanning system to reconstruct a car door panel.

  20. Hyperspectral imaging system for disease scanning on banana plants

    Science.gov (United States)

    Ochoa, Daniel; Cevallos, Juan; Vargas, German; Criollo, Ronald; Romero, Dennis; Castro, Rodrigo; Bayona, Oswaldo

    2016-05-01

    Black Sigatoka (BS) is a banana plant disease caused by the fungus Mycosphaerella fijiensis. BS symptoms can be observed at late infection stages. By that time, BS has probably spread to other plants. In this paper, we present our current work on building an hyper-spectral (HS) imaging system aimed at in-vivo detection of BS pre-symptomatic responses in banana leaves. The proposed imaging system comprises a motorized stage, a high-sensitivity VIS-NIR camera and an optical spectrograph. To capture images of the banana leaf, the stage's speed and camera's frame rate must be computed to reduce motion blur and to obtain the same resolution along both spatial dimensions of the resulting HS cube. Our continuous leaf scanning approach allows imaging leaves of arbitrary length with minimum frame loss. Once the images are captured, a denoising step is performed to improve HS image quality and spectral profile extraction.

  1. Cooperative environment scans based on a multi-robot system.

    Science.gov (United States)

    Kwon, Ji-Wook

    2015-03-17

    This paper proposes a cooperative environment scan system (CESS) using multiple robots, where each robot has low-cost range finders and low processing power. To organize and maintain the CESS, a base robot monitors the positions of the child robots, controls them, and builds a map of the unknown environment, while the child robots with low performance range finders provide obstacle information. Even though each child robot provides approximated and limited information of the obstacles, CESS replaces the single LRF, which has a high cost, because much of the information is acquired and accumulated by a number of the child robots. Moreover, the proposed CESS extends the measurement boundaries and detects obstacles hidden behind others. To show the performance of the proposed system and compare this with the numerical models of the commercialized 2D and 3D laser scanners, simulation results are included.

  2. Cooperative Environment Scans Based on a Multi-Robot System

    Directory of Open Access Journals (Sweden)

    Ji-Wook Kwon

    2015-03-01

    Full Text Available This paper proposes a cooperative environment scan system (CESS using multiple robots, where each robot has low-cost range finders and low processing power. To organize and maintain the CESS, a base robot monitors the positions of the child robots, controls them, and builds a map of the unknown environment, while the child robots with low performance range finders provide obstacle information. Even though each child robot provides approximated and limited information of the obstacles, CESS replaces the single LRF, which has a high cost, because much of the information is acquired and accumulated by a number of the child robots. Moreover, the proposed CESS extends the measurement boundaries and detects obstacles hidden behind others. To show the performance of the proposed system and compare this with the numerical models of the commercialized 2D and 3D laser scanners, simulation results are included.

  3. Statistical Approaches for DNA Barcoding

    DEFF Research Database (Denmark)

    Nielsen, Rasmus; Matz, M.

    2006-01-01

    The use of DNA as a tool for species identification has become known as "DNA barcoding" (Floyd et al., 2002; Hebert et al., 2003; Remigio and Hebert, 2003). The basic idea is straightforward: a small amount of DNA is extracted from the specimen, amplified and sequenced. The gene region sequenced...... is chosen so that it is nearly identical among individuals of the same species, but different between species, and therefore its sequence, can serve as an identification tag for the species ("DNA barcode"). By matching the sequence obtained from an unidentified specimen ("query" sequence) to the database...

  4. Polylox barcoding reveals haematopoietic stem cell fates realized in vivo.

    Science.gov (United States)

    Pei, Weike; Feyerabend, Thorsten B; Rössler, Jens; Wang, Xi; Postrach, Daniel; Busch, Katrin; Rode, Immanuel; Klapproth, Kay; Dietlein, Nikolaus; Quedenau, Claudia; Chen, Wei; Sauer, Sascha; Wolf, Stephan; Höfer, Thomas; Rodewald, Hans-Reimer

    2017-08-24

    Developmental deconvolution of complex organs and tissues at the level of individual cells remains challenging. Non-invasive genetic fate mapping has been widely used, but the low number of distinct fluorescent marker proteins limits its resolution. Much higher numbers of cell markers have been generated using viral integration sites, viral barcodes, and strategies based on transposons and CRISPR-Cas9 genome editing; however, temporal and tissue-specific induction of barcodes in situ has not been achieved. Here we report the development of an artificial DNA recombination locus (termed Polylox) that enables broadly applicable endogenous barcoding based on the Cre-loxP recombination system. Polylox recombination in situ reaches a practical diversity of several hundred thousand barcodes, allowing tagging of single cells. We have used this experimental system, combined with fate mapping, to assess haematopoietic stem cell (HSC) fates in vivo. Classical models of haematopoietic lineage specification assume a tree with few major branches. More recently, driven in part by the development of more efficient single-cell assays and improved transplantation efficiencies, different models have been proposed, in which unilineage priming may occur in mice and humans at the level of HSCs. We have introduced barcodes into HSC progenitors in embryonic mice, and found that the adult HSC compartment is a mosaic of embryo-derived HSC clones, some of which are unexpectedly large. Most HSC clones gave rise to multilineage or oligolineage fates, arguing against unilineage priming, and suggesting coherent usage of the potential of cells in a clone. The spreading of barcodes, both after induction in embryos and in adult mice, revealed a basic split between common myeloid-erythroid development and common lymphocyte development, supporting the long-held but contested view of a tree-like haematopoietic structure.

  5. MONTE CARLO SIMULATION OF MULTIFOCAL STOCHASTIC SCANNING SYSTEM

    Directory of Open Access Journals (Sweden)

    LIXIN LIU

    2014-01-01

    Full Text Available Multifocal multiphoton microscopy (MMM has greatly improved the utilization of excitation light and imaging speed due to parallel multiphoton excitation of the samples and simultaneous detection of the signals, which allows it to perform three-dimensional fast fluorescence imaging. Stochastic scanning can provide continuous, uniform and high-speed excitation of the sample, which makes it a suitable scanning scheme for MMM. In this paper, the graphical programming language — LabVIEW is used to achieve stochastic scanning of the two-dimensional galvo scanners by using white noise signals to control the x and y mirrors independently. Moreover, the stochastic scanning process is simulated by using Monte Carlo method. Our results show that MMM can avoid oversampling or subsampling in the scanning area and meet the requirements of uniform sampling by stochastically scanning the individual units of the N × N foci array. Therefore, continuous and uniform scanning in the whole field of view is implemented.

  6. The Emulsion Scanning System of the OPERA experiment

    CERN Document Server

    Juget, F

    2010-01-01

    The OPERA experiment has for goal the direct detection of !μ ! !! oscilla- tion, using an hybrid apparatus composed of electronic detectors and nuclear photographic emulsions. A charged particle crossing an emulsion layer ion- izes the medium along its path leaving a latent image which leads, after de- velopment, to a sequence of aligned grains. Nuclear emulsions are analyzed by means of optical microscopes to reconstruct the 3D particle tracks. The OPERA collaboration has developed a dedicated system to scan a large num- ber of emulsions (surface of about 1000 m2). The achieved resolution is "1 μm and "1 mrad allowing to observe directly the short-lived " particles pro- duced in !!CC interactions.

  7. 75 FR 56922 - Implementation of the Intelligent Mail Package Barcode

    Science.gov (United States)

    2010-09-17

    ... in planning for future mailings and preparing for system changes necessary to adopt the new IMpb... absence of information associating the piece with its specific payment method; and have limited...) and 3-digit Service Type Code. The data construction of the IMpb barcode will be different from that...

  8. Modelling and calibration of the laser beam-scanning triangulation measurement system

    NARCIS (Netherlands)

    Wang, G.Y.; Zheng, Bing; Li, Xin; Houkes, Z.; Regtien, Paulus P.L.

    2002-01-01

    We present an approach of modelling and calibration of an active laser beam-scanning triangulation measurement system. The system works with the pattern of two-dimensional beam-scanning illumination and one-dimensional slit-scanning detection with a photo-multiplier tube instead of a CCD camera. By

  9. Research on calibration algorithm in laser scanning projection system

    Science.gov (United States)

    Li, Li Juan; Qu, Song; Hou, Mao Sheng

    2017-10-01

    Laser scanning projection technology can project the image defined by the existing CAD digital model to the working surface, in the form of a laser harness profile. This projection is in accordance with the ratio of 1: 1. Through the laser harness contours with high positioning quality, the technical staff can carry out the operation with high precision. In a typical process of the projection, in order to determine the relative positional relationship between the laser projection instrument and the target, it is necessary to place several fixed reference points on the projection target and perform the calibration of projection. This position relationship is the transformation from projection coordinate system to the global coordinate system. The entire projection work is divided into two steps: the first step, the calculation of the projector six position parameters is performed, that is, the projector calibration. In the second step, the deflection angle is calculated by the known projector position parameter and the known coordinate points, and then the actual model is projected. Typically, the calibration requires the establishment of six reference points to reduce the possibility of divergence of the nonlinear equations, but the whole solution is very complex and the solution may still diverge. In this paper, the distance is detected combined with the calculation so that the position parameters of the projector can be solved by using the coordinate values of three reference points and the distance of at least one reference point to the projector. The addition of the distance measurement increases the stability of the solution of the nonlinear system and avoids the problem of divergence of the solution caused by the reference point which is directly under the projector. Through the actual analysis and calculation, the Taylor expansion method combined with the least squares method is used to obtain the solution of the system. Finally, the simulation experiment is

  10. Barcode Medication Administration: Lessons Learned From an Intensive Care Unit Implementation

    National Research Council Canada - National Science Library

    Wideman, Mary V; Whittler, Michael E; Anderson, Timothy M

    2005-01-01

    An electronic barcode medication administration system was successfully implemented in the acute care and long-term care sections of a 118-bed Veterans Administration hospital beginning in February 2000...

  11. Self-registering spread-spectrum barcode method

    Science.gov (United States)

    Cummings, Eric B.; Even Jr., William R.

    2004-11-09

    A novel spread spectrum barcode methodology is disclosed that allows a barcode to be read in its entirety even when a significant fraction or majority of the barcode is obscured. The barcode methodology makes use of registration or clocking information that is distributed along with the encoded user data across the barcode image. This registration information allows for the barcode image to be corrected for imaging distortion such as zoom, rotation, tilt, curvature, and perspective.

  12. Potential use of DNA barcodes in regulatory science: applications of the Regulatory Fish Encyclopedia.

    Science.gov (United States)

    Yancy, Haile F; Zemlak, Tyler S; Mason, Jacquline A; Washington, Jewell D; Tenge, Bradley J; Nguyen, Ngoc-Lan T; Barnett, James D; Savary, Warren E; Hill, Walter E; Moore, Michelle M; Fry, Frederick S; Randolph, Spring C; Rogers, Patricia L; Hebert, Paul D N

    2008-01-01

    The use of a DNA-based identification system (DNA barcoding) founded on the mitochondrial gene cytochrome c oxidase subunit I (COI) was investigated for updating the U.S. Food and Drug Administration Regulatory Fish Encyclopedia (RFE; http://www.cfsan.fda.gov/-frf/rfe0.html). The RFE is a compilation of data used to identify fish species. It was compiled to help regulators identify species substitution that could result in potential adverse health consequences or could be a source of economic fraud. For each of many aquatic species commonly sold in the United States, the RFE includes high-resolution photographs of whole fish and their marketed product forms and species-specific biochemical patterns for authenticated fish species. These patterns currently include data from isoelectric focusing studies. In this article, we describe the generation of DNA barcodes for 172 individual authenticated fish representing 72 species from 27 families contained in the RFE. These barcode sequences can be used as an additional identification resource. In a blind study, 60 unknown fish muscle samples were barcoded, and the results were compared with the RFE barcode reference library. All 60 samples were correctly identified to species based on the barcoding data. Our study indicates that DNA barcoding can be a powerful tool for species identification and has broad potential applications.

  13. Uniform irradiation system using beam scanning method for cyclotron

    International Nuclear Information System (INIS)

    Agematsu, Takashi; Okumura, Susumu; Arakawa, Kazuo

    1994-03-01

    JAERI AVF-cyclotron is equipped with an ion beam scanner for large area irradiation. The two-dimensional fluence distribution of ion beam obtained using cellulose triacetate film dosimeter was not uniform. This is resulted from the distortion of excitation current for electromagnet of the scanner. So, the beam scanning condition, i.e., the relation between the ion species, the beam profile and the scanning width, was extremely limited to make a good uniformity. We have developed a beam scanning simulator to get fluence distributions by calculation and then compared the simulated distributions with the measured ones. It was revealed that the both of them are in good agreement and the beam scanning condition to get good uniformity was led by using this simulator. On the basis of these results, the power supply of scanner was improved. A good uniformity of beam distribution was available. (author)

  14. A novel scanning system using an industrial robot and the workspace measurement and positioning system

    Science.gov (United States)

    Zhao, Ziyue; Zhu, Jigui; Yang, Linghui; Lin, Jiarui

    2015-10-01

    The present scanning system consists of an industrial robot and a line-structured laser sensor which uses the industrial robot as a position instrument to guarantee the accuracy. However, the absolute accuracy of an industrial robot is relatively poor compared with the good repeatability in the manufacturing industry. This paper proposes a novel method using the workspace measurement and positioning system (wMPS) to remedy the lack of accuracy of the industrial robot. In order to guarantee the positioning accuracy of the system, the wMPS which is a laser-based measurement technology designed for large-volume metrology applications is brought in. Benefitting from the wMPS, this system can measure different cell-areas by the line-structured laser sensor and fuse the measurement data of different cell-areas by using the wMPS accurately. The system calibration which is the procedure to acquire and optimize the structure parameters of the scanning system is also stated in detail in this paper. In order to verify the feasibility of the system for scanning the large free-form surface, an experiment is designed to scan the internal surface of the door of a car-body in white. The final results show that the measurement data of the whole measuring areas have been jointed perfectly and there is no mismatch in the figure especially in the hole measuring areas. This experiment has verified the rationality of the system scheme, the correctness and effectiveness of the relevant methods.

  15. DNA barcodes of Philippine accipitrids.

    Science.gov (United States)

    Ong, Perry S; Luczon, Adrian U; Quilang, Jonas P; Sumaya, Anna Mae T; Ibañez, Jayson C; Salvador, Dennis J; Fontanilla, Ian Kendrich C

    2011-03-01

    DNA barcoding is a molecular method that rapidly identifies an individual to a known taxon or its closest relative based on a 650-bp fragment of the cytochrome c oxidase subunit I (COI). In this study, DNA barcodes of members of the family Accipitridae, including Haliastur indus (brahminy kite), Haliaeetus leucogaster (white-bellied sea eagle), Ichthyophaga ichthyaetus (grey-headed fish eagle), Spilornis holospilus (crested serpent-eagle), Spizaetus philippensis (Philippine hawk-eagle), and Pithecophaga jefferyi (Philippine eagle), are reported for the first time. All individuals sampled are kept at the Philippine Eagle Center in Davao City, Philippines. Basic local alignment search tool results demonstrated that the COI sequences for these species were unique. The COI gene trees constructed using the maximum-likelihood and neighbour-joining (NJ) methods supported the monophyly of the booted eagles of the Aquilinae and the sea eagles of the Haliaeetinae but not the kites of the Milvinae. © 2010 Blackwell Publishing Ltd.

  16. A flexible 3D laser scanning system using a robotic arm

    Science.gov (United States)

    Fei, Zixuan; Zhou, Xiang; Gao, Xiaofei; Zhang, Guanliang

    2017-06-01

    In this paper, we present a flexible 3D scanning system based on a MEMS scanner mounted on an industrial arm with a turntable. This system has 7-degrees of freedom and is able to conduct a full field scan from any angle, suitable for scanning object with the complex shape. The existing non-contact 3D scanning system usually uses laser scanner that projects fixed stripe mounted on the Coordinate Measuring Machine (CMM) or industrial robot. These existing systems can't perform path planning without CAD models. The 3D scanning system presented in this paper can scan the object without CAD models, and we introduced this path planning method in the paper. We also propose a practical approach to calibrating the hand-in-eye system based on binocular stereo vision and analyzes the errors of the hand-eye calibration.

  17. Application of linear systems theory to characterize coherence scanning interferometry

    Science.gov (United States)

    Mandal, Rahul; Palodhi, Kanik; Coupland, Jeremy; Leach, Richard; Mansfield, Daniel

    2012-04-01

    This paper considers coherence scanning interferometry as a linear filtering operation that is characterised by a point spread function in the space domain or equivalently a transfer function in the frequency domain. The applicability of the theory is discussed and the effects of these functions on the measured interferograms, and their influence on the resulting surface measurements, are described. The practical characterisation of coherence scanning interferometers using a spherical reference artefact is then considered and a new method to compensate measurement errors, based on a modified inverse filter, is demonstrated.

  18. Single nucleotide polymorphism barcoding of cytochrome c oxidase I sequences for discriminating 17 species of Columbidae by decision tree algorithm.

    Science.gov (United States)

    Yang, Cheng-Hong; Wu, Kuo-Chuan; Dahms, Hans-Uwe; Chuang, Li-Yeh; Chang, Hsueh-Wei

    2017-07-01

    DNA barcodes are widely used in taxonomy, systematics, species identification, food safety, and forensic science. Most of the conventional DNA barcode sequences contain the whole information of a given barcoding gene. Most of the sequence information does not vary and is uninformative for a given group of taxa within a monophylum. We suggest here a method that reduces the amount of noninformative nucleotides in a given barcoding sequence of a major taxon, like the prokaryotes, or eukaryotic animals, plants, or fungi. The actual differences in genetic sequences, called single nucleotide polymorphism (SNP) genotyping, provide a tool for developing a rapid, reliable, and high-throughput assay for the discrimination between known species. Here, we investigated SNPs as robust markers of genetic variation for identifying different pigeon species based on available cytochrome c oxidase I (COI) data. We propose here a decision tree-based SNP barcoding (DTSB) algorithm where SNP patterns are selected from the DNA barcoding sequence of several evolutionarily related species in order to identify a single species with pigeons as an example. This approach can make use of any established barcoding system. We here firstly used as an example the mitochondrial gene COI information of 17 pigeon species (Columbidae, Aves) using DTSB after sequence trimming and alignment. SNPs were chosen which followed the rule of decision tree and species-specific SNP barcodes. The shortest barcode of about 11 bp was then generated for discriminating 17 pigeon species using the DTSB method. This method provides a sequence alignment and tree decision approach to parsimoniously assign a unique and shortest SNP barcode for any known species of a chosen monophyletic taxon where a barcoding sequence is available.

  19. A 3-d laser scanning system and scan data processing method for the monitoring of tunnel deformations

    Science.gov (United States)

    Chmelina, Klaus; Jansa, Josef; Hesina, Gerd; Traxler, Christoph

    2012-11-01

    The paper presents the mobile multi-sensor system Orthos Plus for the monitoring and mapping of tunnel walls, a scan data processing method for the evaluation of 3-d tunnel wall displacements from subsequent wall scans and, finally, a virtual reality tool supporting the interpretation of data. The measuring system consists of a 3-d laser scanner, a motorised total station and a digital camera that are integrated on a light metal frame that is installed on a mobile platform. It has been designed to perform tunnel measurements most efficiently and to meet the special requirements of tunnels under construction. The evaluation of 3-d displacements is based on a 3-d matching algorithm that takes advantage of the particular conditions of tunnel (shotcrete) surfaces. The virtual reality tool allows viewing of data in a 3-d virtual reality tunnel model and their animation in time and space in order supports understanding in an optimal way. The measuring system Orthos Plus has been developed in the course of a national research project, the 3-d matching method in the frame of the Austrian Christian Doppler Laboratory Spatial Data from Laser Scanning and Remote Sensing and the VR tool in the Austrian COMET K1 Competence Center VRVis Center (www.vrvis.at).

  20. Scanning high-T{sub c} SQUID imaging system for magnetocardiography

    Energy Technology Data Exchange (ETDEWEB)

    Yang, H-C [Department of Physics, National Taiwan University, Taipei 106, Taiwan (China); Wu, T-Y [Institute of Electro-Optical Science and Technology, National Normal Taiwan University 116, Taipei, Taiwan (China); Horng, H-E [Institute of Electro-Optical Science and Technology, National Normal Taiwan University 116, Taipei, Taiwan (China); Wu, C-C [Division of Cardiology, Department of Internal Medicine, National Taiwan University Hospital and National Taiwan University School of Medicine, Taipei 106, Taiwan (China); Yang, S Y [Institute of Electro-Optical Science and Technology, National Normal Taiwan University 116, Taipei, Taiwan (China); Liao, S-H [Department of Physics, National Normal Taiwan University, Taipei 116, Taiwan (China); Wu, C-H [Department of Physics, National Taiwan University, Taipei 106, Taiwan (China); Jeng, J T [Department of Mechanical Engineering, National Taipei University of Technology, Taipei, 105, Taiwan (China); Chen, J C [Department of Physics, National Taiwan University, Taipei 106, Taiwan (China); Chen, Kuen-Lin [Department of Physics, National Taiwan University, Taipei 106, Taiwan (China); Chen, M J [Department of Physics, National Taiwan University, Taipei 106, Taiwan (China)

    2006-05-15

    A scanning magnetocardiography (MCG) system constructed from SQUID sensors offers potential to basic or clinical research in biomagnetism. In this work, we study a first order scanning electronic high-T{sub c} (HTS) SQUID MCG system for biomagnetic signals. The scanning MCG system was equipped with an x-y translation bed powered by step motors. Using noise cancellation and {mu}-metal shielding, we reduced the noise level substantially. The established scanning HTS MCG system was used to study the magnetophysiology of hypercholesterolaemic (HC) rabbits. The MCG data of HC rabbits were analysed. The MCG contour map of HC rabbits provides experimental models for the interpretation of human cardiac patterns.

  1. Mapping global biodiversity connections with DNA barcodes: Lepidoptera of Pakistan.

    Science.gov (United States)

    Ashfaq, Muhammad; Akhtar, Saleem; Rafi, Muhammad Athar; Mansoor, Shahid; Hebert, Paul D N

    2017-01-01

    Sequences from the DNA barcode region of the mitochondrial COI gene are an effective tool for specimen identification and for the discovery of new species. The Barcode of Life Data Systems (BOLD) (www.boldsystems.org) currently hosts 4.5 million records from animals which have been assigned to more than 490,000 different Barcode Index Numbers (BINs), which serve as a proxy for species. Because a fourth of these BINs derive from Lepidoptera, BOLD has a strong capability to both identify specimens in this order and to support studies of faunal overlap. DNA barcode sequences were obtained from 4503 moths from 329 sites across Pakistan, specimens that represented 981 BINs from 52 families. Among 379 species with a Linnaean name assignment, all were represented by a single BIN excepting five species that showed a BIN split. Less than half (44%) of the 981 BINs had counterparts in other countries; the remaining BINs were unique to Pakistan. Another 218 BINs of Lepidoptera from Pakistan were coupled with the 981 from this study before being compared with all 116,768 BINs for this order. As expected, faunal overlap was highest with India (21%), Sri Lanka (21%), United Arab Emirates (20%) and with other Asian nations (2.1%), but it was very low with other continents including Africa (0.6%), Europe (1.3%), Australia (0.6%), Oceania (1.0%), North America (0.1%), and South America (0.1%). This study indicates the way in which DNA barcoding facilitates measures of faunal overlap even when taxa have not been assigned to a Linnean species.

  2. Identification of North Sea molluscs with DNA barcoding.

    Science.gov (United States)

    Barco, Andrea; Raupach, Michael J; Laakmann, Silke; Neumann, Hermann; Knebelsberger, Thomas

    2016-01-01

    Sequence-based specimen identification, known as DNA barcoding, is a common method complementing traditional morphology-based taxonomic assignments. The fundamental resource in DNA barcoding is the availability of a taxonomically reliable sequence database to use as a reference for sequence comparisons. Here, we provide a reference library including 579 sequences of the mitochondrial cytochrome c oxidase subunit I for 113 North Sea mollusc species. We tested the efficacy of this library by simulating a sequence-based specimen identification scenario using Best Match, Best Close Match (BCM) and All Species Barcode (ASB) criteria with three different threshold values. Each identification result was compared with our prior morphology-based taxonomic assignments. Our simulation resulted in 87.7% congruent identifications (93.8% when excluding singletons). The highest number of congruent identifications was obtained with BCM and ASB and a 0.05 threshold. We also compared identifications with genetic clustering (Barcode Index Numbers, BINs) computed by the Barcode of Life Datasystem (BOLD). About 68% of our morphological identifications were congruent with BINs created by BOLD. Forty-nine sequences were clustered in 16 discordant BINs, and these were divided in two classes: sequences from different species clustered in a single BIN and conspecific sequences divided in more BINs. Whereas former incongruences were probably caused by BOLD entries in need of a taxonomic update, the latter incongruences regarded taxa requiring further investigations. These include species with amphi-Atlantic distribution, whose genetic structure should be evaluated over their entire range to produce a reliable sequence-based identification system. © 2015 John Wiley & Sons Ltd.

  3. Identification of Species in Tripterygium (Celastraceae) Based on DNA Barcoding.

    Science.gov (United States)

    Zhang, Xiaomei; Li, Na; Yao, Yuanyuan; Liang, Xuming; Qu, Xianyou; Liu, Xiang; Zhu, Yingjie; Yang, Dajian; Sun, Wei

    2016-11-01

    Species of genus Tripterygium (Celastraceae) have attracted much attention owing to their excellent effect on treating autoimmune and inflammatory diseases. However, due to high market demand causing overexploitation, natural populations of genus Tripterygium have rapidly declined. Tripterygium medicinal materials are mainly collected from the wild, making the quality of medicinal materials unstable. Additionally, identification of herbal materials from Tripterygium species and their adulterants is difficult based on morphological characters. Therefore, an accurate, convenient, and stability method is urgently needed. In this wok, we developed a DNA barcoding technique to distinguish T. wilfordii HOOK. f., T. hypoglaucum (LÉVL.) HUTCH, and T. regelii SPRAGUE et TAKEDA and their adulterants based on four uniform and standard DNA regions (internal transcribed spacer 2 (ITS2), matK, rbcL, and psbA-trnH). DNA was extracted from 26 locations of fresh leaves. Phylogenetic tree was constructed with Neighbor-Joining (NJ) method, while barcoding gap was analyzed to assess identification efficiency. Compared with the other DNA barcodes applied individually or in combination, ITS2+psbA-trnH was demonstrated as the optimal barcode. T. hypoglaucum and T. wilfordii can be considered as conspecific, while T. regelii was recognized as a separate species. Furthermore, identification of commercial Tripterygium samples was conducted using BLAST against GenBank and Species Identification System for Traditional Chinese Medicine. Our results indicated that DNA barcoding is a convenient, effective, and stability method to identify and distinguish Tripterygium and its adulterants, and could be applied as the quality control for Tripterygium medicinal preparations and monitoring of the medicinal herb trade in markets.

  4. Miniaturized Hand Held Microwave Interference Scanning System for Nde of Dielectric Armor and Armor Systems

    Science.gov (United States)

    Schmidt, Karl F.; Little, Jack R.; Ellingson, William A.; Meitzler, Thomas J.; Green, William

    2011-06-01

    Inspection of ceramic-based armor has advanced through development of a microwave-based, portable, non-contact NDE system. Recently, this system was miniaturized and made wireless for maximum utility in field applications. The electronic components and functionality of the laboratory system are retained, with alternative means of position input for creation of scan images. Validation of the detection capability was recently demonstrated using specially fabricated surrogates and ballistic impact-damaged specimens. The microwave data results have been compared to data from laboratory-based microwave interferometry systems and digital x-ray imaging. The microwave interference scanning has been shown to reliably detect cracks, laminar features and material property variations. The authors present details of the system operation, descriptions of the test samples used and recent results obtained.

  5. Microcoding: the second step in DNA barcoding

    NARCIS (Netherlands)

    Summerbell, R.C.; Lévesque, C.A.; Seifert, K.A.; Bovers, M.; Fell, J.W.; Diaz, M.R.; Boekhout, T.; Hoog, de G.S.; Stalpers, J.A.; Crous, P.W.

    2005-01-01

    After the process of DNA barcoding has become well advanced in a group of organisms, as it has in the economically important fungi, the question then arises as to whether shorter and literally more barcode-like DNA segments should be utilized to facilitate rapid identification and, where applicable,

  6. DNA Barcoding Investigations Bring Biology to Life

    Science.gov (United States)

    Musante, Susan

    2010-01-01

    This article describes how DNA barcoding investigations bring biology to life. Biologists recognize the power of DNA barcoding not just to teach biology through connections to the real world but also to immerse students in the exciting process of science. As an investigator in the Program for the Human Environment at Rockefeller University in New…

  7. Long-range barcode labeling-sequencing

    Energy Technology Data Exchange (ETDEWEB)

    Chen, Feng; Zhang, Tao; Singh, Kanwar K.; Pennacchio, Len A.; Froula, Jeff L.; Eng, Kevin S.

    2016-10-18

    Methods for sequencing single large DNA molecules by clonal multiple displacement amplification using barcoded primers. Sequences are binned based on barcode sequences and sequenced using a microdroplet-based method for sequencing large polynucleotide templates to enable assembly of haplotype-resolved complex genomes and metagenomes.

  8. Improvement in two-dimensional barcode

    Indian Academy of Sciences (India)

    SONAM WASULE

    chrome counterpart to allow error recovery for data extracted from the barcode. Note that the proposed frame- work is applicable to any monochrome barcode; the encoding rate of the monochrome counterpart can be increased utilizing imaginary bit planes using grey levels. The independent input data are converted into a ...

  9. 77 FR 12764 - POSTNET Barcode Discontinuation

    Science.gov (United States)

    2012-03-02

    ... inspect and photocopy all written comments at USPS[supreg] Headquarters Library, 475 L'Enfant Plaza SW... POSTNET barcodes and allowing only Intelligent Mail[supreg] barcodes (IMb TM ) for automation price... are committed to providing information to and working with individual mailers and software providers...

  10. A fluorescent screen + CCD system for quality assurance of therapeutic scanned ion beams

    Energy Technology Data Exchange (ETDEWEB)

    Takeshita, E., E-mail: eriuli@nirs.go.jp [National Institute of Radiological Sciences, Chiba (Japan); Furukawa, T., E-mail: t_furu@nirs.go.jp [National Institute of Radiological Sciences, Chiba (Japan); Inaniwa, T., E-mail: taku@nirs.go.jp [National Institute of Radiological Sciences, Chiba (Japan); Sato, S., E-mail: shin_s@nirs.go.jp [National Institute of Radiological Sciences, Chiba (Japan); Himukai, T., E-mail: himukai@nirs.go.jp [National Institute of Radiological Sciences, Chiba (Japan); Shirai, T., E-mail: t_shirai@nirs.go.jp [National Institute of Radiological Sciences, Chiba (Japan); Noda, K., E-mail: noda_k@nirs.go.jp [National Institute of Radiological Sciences, Chiba (Japan)

    2011-12-15

    A fluorescent screen + a charge coupled device (CCD) system were developed to verify the performance of scanned ion beams at the HIMAC. The fluorescent light from the screen is observed by the CCD camera. Two-dimensional fields, produced by the scanning process, i.e., the position and the size of the beam for each scan, represent of the important issues in scanning irradiation. In the developed system, the two-dimensional relative fluence and the flatness of the irradiation field were measured in a straightforward technique from the luminance distribution on the screen. The position and the size of the beams were obtained from centroid computation results of the brightness. By the good sensitivity and spatial resolution of the fluorescent screen + CCD system, the scanned ion beams were verified as the measurements at the HIMAC prototype scanning system.

  11. A fluorescent screen + CCD system for quality assurance of therapeutic scanned ion beams

    Science.gov (United States)

    Takeshita, E.; Furukawa, T.; Inaniwa, T.; Sato, S.; Himukai, T.; Shirai, T.; Noda, K.

    2011-12-01

    A fluorescent screen + a charge coupled device (CCD) system were developed to verify the performance of scanned ion beams at the HIMAC. The fluorescent light from the screen is observed by the CCD camera. Two-dimensional fields, produced by the scanning process, i.e., the position and the size of the beam for each scan, represent of the important issues in scanning irradiation. In the developed system, the two-dimensional relative fluence and the flatness of the irradiation field were measured in a straightforward technique from the luminance distribution on the screen. The position and the size of the beams were obtained from centroid computation results of the brightness. By the good sensitivity and spatial resolution of the fluorescent screen + CCD system, the scanned ion beams were verified as the measurements at the HIMAC prototype scanning system.

  12. Design, fabrication and commissioning of motorized scanning bed mechanism for shadow shield whole body counting system

    International Nuclear Information System (INIS)

    Arun, B.; Varalakshimi, S.; Manohari, M.; Mathiyarasu, R.

    2012-01-01

    A new scanning bed mechanism for shadow shield counting system is designed, fabricated and commissioned at RSD, IGCAR. The present motorized scanning bed mechanism has varying scan speeds, state of art limit sensors, smooth bed movement, touch screen based software controlled operation parameters with UPS power back-up. In view of the improved personnel safety the entire system has been designed to operate with low voltage power supply (24V). The evaluation demonstrated that the incorporation of the new motorized scanning mechanism has not affected the counting performance of the shadow shield wholebody counting system. (author)

  13. An application of ultrasonic inspection system (INER-SCAN) inspecting generator retaining rings

    International Nuclear Information System (INIS)

    Chen, L.C.; Hwang, S.C.

    1994-01-01

    The performances of the automatic ultrasonic inspecting and imaging system (INER-SCAN) developed by the NDT laboratory of the Institute of Nuclear Energy Research have been enhanced and much more improved to commercial level. With appropriate rearrangements of software libraries, it is used to inspect generator retaining rings which are critical structural rotor components that support the end-turn regions of the rotor wingings against centrifugal forces. The use of the INER-SCAN provides distinct advantages over other systems in terms of the reliability of inspection and the flexibility of system performance modifications. The INER-SCAN system assists users to select and modify ultrasonic parameters under computer-aided environment. In addition, the INER-SCAN system contains the necessary software functions to image the ultrasonic data (A-SCAN, B-SCAN, B'-SCAN, C-SCAN). The use of the imaging system makes it quite easy to evaluate various test parameters and their effects on the discrimination between geometric and IGSCC reflectors. Through experimental test, it is recognized that the system has powerful detectable capability which can find 0.2mm-depth slight scratch on the inner surface of retaining rings. This system can also be used on different generator retaining rings (different in terms of hidden design features) without the need for access to the dimension of retaining ring

  14. Scanning Long-wave Optical Test System: a new ground optical surface slope test system

    Science.gov (United States)

    Su, Tianquan; Park, Won Hyun; Parks, Robert E.; Su, Peng; Burge, James H.

    2011-09-01

    The scanning long-wave optical test system (SLOTS) is under development at the University of Arizona to provide rapid and accurate measurements of aspherical optical surfaces during the grinding stage. It is based on the success of the software configurable optical test system (SCOTS) which uses visible light to measure surface slopes. Working at long wave infrared (LWIR, 7-14 μm), SLOTS measures ground optical surface slopes by viewing the specular reflection of a scanning hot wire. A thermal imaging camera collects data while motorized stages scan the wire through the field. Current experiments show that the system can achieve a high precision at micro-radian level with fairly low cost equipment. The measured surface map is comparable with interferometer for slow optics. This IR system could be applied early in the grinding stage of fabrication of large telescope mirrors to minimize the surface shape error imparted during processing. This advantage combined with the simplicity of the optical system (no null optics, no high power carbon dioxide laser) would improve the efficiency and shorten the processing time.

  15. Adaptive noise Wiener filter for scanning electron microscope imaging system.

    Science.gov (United States)

    Sim, K S; Teh, V; Nia, M E

    2016-01-01

    Noise on scanning electron microscope (SEM) images is studied. Gaussian noise is the most common type of noise in SEM image. We developed a new noise reduction filter based on the Wiener filter. We compared the performance of this new filter namely adaptive noise Wiener (ANW) filter, with four common existing filters as well as average filter, median filter, Gaussian smoothing filter and the Wiener filter. Based on the experiments results the proposed new filter has better performance on different noise variance comparing to the other existing noise removal filters in the experiments. © Wiley Periodicals, Inc.

  16. PRAVDA: An interactive graphic system to scan and rescue events

    International Nuclear Information System (INIS)

    Menasce, D.; Palombo, F.; Sala, S.

    1981-01-01

    A complete analysis of coherent production, that includes also a partial wave analysis, requires accurate information on the angular distribution of the rejected events. In addition it might be necessary for reaction 2 to rescue all the rejected events if the inefficiency is too high. In order to overcome these problems, as well as providing a rapid scanning facility, a special interactive graphic package has been developed which makes it possible to reconstruct events that are lost by off-line analysis. (orig./HSI)

  17. Determining the flare dispensing program effectiveness against conical-scan and spin-scan reticle systems via Gaussian mixture models

    Science.gov (United States)

    Şahingil, Mehmet C.; Aslan, Murat Ş.

    2013-05-01

    The reticle systems which are considered as the classical approach for determining the angular position of radiating targets in infrared band are widely used in early generation surface-to-air and air-to-air infrared guided missile seekers. One of the cost-effective ways of protecting aircrafts against these missiles is to dispense flare decoys from the countermeasure dispensing system (CMDS) integrated into the aircraft platform. Although this counter-measuring technique seems very simple, if not optimized carefully, it may not be effective for protecting the aircraft. Flares should be dispensed in accordance with a specific dispensing program which determines the number of flares to be dispensed from each dispenser of the CMDS and timing sequence of dispensing. Optimizing the parameters of the dispensing program is not trivial. It requires a good understanding of the operating principle of the threat seeker, operational capabilities of own platform and engagement scenario between them. In the present paper, we propose a complete simulation-based procedure to form an effectiveness boundary of flare dispensing programs against the spin-scan and conical-scan reticle seekers. The region of effectiveness is determined via Gaussian mixture models. The raw data is collected via extensive number of simulations using a MATLAB-coded simulator which models reticle-based seeker, aircraft radiation, aircraft motion, aircraft CMDS system, flare motion and flare radiation.

  18. The Diagnostic Value of Brain Scanning in the Diseases of the Central Nervous System

    International Nuclear Information System (INIS)

    Kim, Kwang Won; Lee, Myung Chul; Koh, Chang Soon; Lee, Mun Ho; Chang, Kee Hyun; Han, Man Chung; Choi, Kil Su; Son, Hyo Chung; Cho, Byung Kyu

    1974-01-01

    The purpose of this study is to evaluate the diagnostic value of the brain scanning and compare the diagnostic accuracy between the scan and carotid angiography. 109 cases which are proved by specific method to each disease, are analyzed to evaluate the diagnostic value of the brain scanning. The 70 cases among the proven 109 case are performed both the scanning and the arteriography and analyzed to compare the accuracy between the scanning and the arteriography. The results are as follows; 1) The diagnostic accuracy of the brain scanning in the diseases of the central nervous system is 64.2%. 2) The diagnostic accuracy of the brain scanning in the brain tumor is 88%, especially brain abscess, glioma, glioblastoma multiforme, meningioma and metastic tumor show high positive rate. 3) The diagnostic accuracy in the disease of the brain vessels is 54%. The comparison of the diagnostic value between the scanning and the arteriography is as follows;1) The diagnostic value in all diseases of the central nervous system is nearly equal. 2) The diagnostic accuracy in the intracranial tumor is slightly higher in the brain scanning (90. 9%) than in the arteriography (81.8%). 3) The diagnostic accuracy in the disease of the brain vessel is higher in the arteriography (77.3%) than in the scanning (54.5%). 5) The diagnostic value when combining the scanning and the arteriography, is 83% in the all central nervous system-lesions, 97% in the cranial tumor and 81.8% in the disease of the central nervous system-vessel. The brain scanning is simple and safe procedure, and moreover has excellent diagnostic value in the diagnosis of the central nervous system lesion.

  19. Pneu-Scan - A novel, lightweight two-axis telemetry tracking system

    Science.gov (United States)

    Sullivan, A.

    The development of Pneu-Scan, a conically scanning tracking antenna feed for telemetry applications, is described. Pneu-Scan has the advantage of being pneumatically driven, thereby eliminating the need for a heavy electric drive motor. Air from the dehydrator/pressurizer system is used to drive the Pneu-Scan pedestal at a scan speed which is proportional to the continuously varying pressure. The S-band tracking feed of the Pneu-Scan is less than five inches in diameter and is considerably lighter than single-channel monopulse (SCM) feeds. Aperture blocking of Pneu-Scan is more than two times smaller than conventional SCM designs. The antenna reflector of the Pneu-Scan system is a lightweight 5-foot graphite-epoxy parabolical reflector positioned by an elevator-over-azimuth pedestal. The elevation assembly is surrounded by an inflatable rotodome which rotates with azimuth. The rotating sphere was designed to have a minimum wind-induced torque, thereby minimizing the required drive power. The weight of the entire system is less than 135 pounds. The principle characteristics of the Pneu-Scan system are summarized in a table.

  20. Modelling of a proton spot scanning system using MCNP6

    International Nuclear Information System (INIS)

    Ardenfors, O; Gudowska, I; Dasu, A; Kopeć, M

    2017-01-01

    The aim of this work was to model the characteristics of a clinical proton spot scanning beam using Monte Carlo simulations with the code MCNP6. The proton beam was defined using parameters obtained from beam commissioning at the Skandion Clinic, Uppsala, Sweden. Simulations were evaluated against measurements for proton energies between 60 and 226 MeV with regard to range in water, lateral spot sizes in air and absorbed dose depth profiles in water. The model was also used to evaluate the experimental impact of lateral signal losses in an ionization chamber through simulations using different detector radii. Simulated and measured distal ranges agreed within 0.1 mm for R 90 and R 80 , and within 0.2 mm for R 50 . The average absolute difference of all spot sizes was 0.1 mm. The average agreement of absorbed dose integrals and Bragg-peak heights was 0.9%. Lateral signal losses increased with incident proton energy with a maximum signal loss of 7% for 226 MeV protons. The good agreement between simulations and measurements supports the assumptions and parameters employed in the presented Monte Carlo model. The characteristics of the proton spot scanning beam were accurately reproduced and the model will prove useful in future studies on secondary neutrons. (paper)

  1. Assessing DNA Barcodes for Species Identification in North American Reptiles and Amphibians in Natural History Collections.

    Science.gov (United States)

    Chambers, E Anne; Hebert, Paul D N

    2016-01-01

    High rates of species discovery and loss have led to the urgent need for more rapid assessment of species diversity in the herpetofauna. DNA barcoding allows for the preliminary identification of species based on sequence divergence. Prior DNA barcoding work on reptiles and amphibians has revealed higher biodiversity counts than previously estimated due to cases of cryptic and undiscovered species. Past studies have provided DNA barcodes for just 14% of the North American herpetofauna, revealing the need for expanded coverage. This study extends the DNA barcode reference library for North American herpetofauna, assesses the utility of this approach in aiding species delimitation, and examines the correspondence between current species boundaries and sequence clusters designated by the BIN system. Sequences were obtained from 730 specimens, representing 274 species (43%) from the North American herpetofauna. Mean intraspecific divergences were 1% and 3%, while average congeneric sequence divergences were 16% and 14% in amphibians and reptiles, respectively. BIN assignments corresponded with current species boundaries in 79% of amphibians, 100% of turtles, and 60% of squamates. Deep divergences (>2%) were noted in 35% of squamate and 16% of amphibian species, and low divergences (reptiles and 23% of amphibians, patterns reflected in BIN assignments. Sequence recovery declined with specimen age, and variation in recovery success was noted among collections. Within collections, barcodes effectively flagged seven mislabeled tissues, and barcode fragments were recovered from five formalin-fixed specimens. This study demonstrates that DNA barcodes can effectively flag errors in museum collections, while BIN splits and merges reveal taxa belonging to deeply diverged or hybridizing lineages. This study is the first effort to compile a reference library of DNA barcodes for herpetofauna on a continental scale.

  2. Calibration of Mounted Parameter for Ship-borne 3D Laser Scanning System

    Directory of Open Access Journals (Sweden)

    XU Wenxue

    2018-02-01

    Full Text Available Ship-borne 3D laser scanning technology has vital theoretical significance and practical value in marine surveying and mapping.As one of the key steps of ship-borne 3D laser scanning, calibration of mounted parameter is urgent to be solved.This paper proposes a calibration method of mounted parameter without control points for ship-borne 3D laser scanning system.Based on the corresponding points in overlapping area, mounted parameter calibration model of scan system is built by time and spatia registration model of ship-borne 3D laser scanning data.Finally, differential least squares are applied to obtain optimum mounted parameters.Experiments demonstrate the reasonable and effectiveness of this method,the quality of scanning data can be significantly improved.

  3. Decreasing mislabeled laboratory specimens using barcode technology and bedside printers.

    Science.gov (United States)

    Brown, Judy E; Smith, Nancy; Sherfy, Beth R

    2011-01-01

    Mislabeling of laboratory samples has been found to be a high-risk issue in acute care hospitals. The goal of this study was to decrease mislabeled blood specimens. In the first year after the implementation of a positive patient identification system using barcoding and computer technology, the number of labeling errors decreased from 103 to 8 per year. The outcome was clinically and statistically significant (P < .001).

  4. Denture identification using unique identification authority of India barcode

    OpenAIRE

    Sudhindra Mahoorkar; Anoop Jain

    2013-01-01

    Over the years, various denture marking systems have been reported in the literature for personal identification. They have been broadly divided into surface marking and inclusion methods. In this technique, patient's unique identification number and barcode printed in the patient's Aadhaar card issued by Unique Identification Authority of India (UIDAI) are used as denture markers. This article describes a simple, quick, and economical method for identification of individual.

  5. Denture identification using unique identification authority of India barcode.

    Science.gov (United States)

    Mahoorkar, Sudhindra; Jain, Anoop

    2013-01-01

    Over the years, various denture marking systems have been reported in the literature for personal identification. They have been broadly divided into surface marking and inclusion methods. In this technique, patient's unique identification number and barcode printed in the patient's Aadhaar card issued by Unique Identification Authority of India (UIDAI) are used as denture markers. This article describes a simple, quick, and economical method for identification of individual.

  6. Design Description of a Tentacle Based Scanning System

    Directory of Open Access Journals (Sweden)

    M. O. Afolayan

    2017-12-01

    Full Text Available A design of a tentacle-based 3D object scanning device is presented in this work. The dimensions of the device were 15 ×15×20 cm and a maximum weight of model that can be placed on its platform is 500g. The design requires that two red laser for distance measurement by triangulation be installed on the left and right side of a Charge Coupled Device (CCD camera. The camera takes the reading as well. The 3D scanner body is made up of polymer matrix for rigidity and dimensional stability. The main mechanism for the scanner is a lead screw and a turntable both managed by National Electrical Manufacturers Association (NEMA 17 stepper motors.

  7. CloudScan - A Configuration-Free Invoice Analysis System Using Recurrent Neural Networks

    DEFF Research Database (Denmark)

    Palm, Rasmus Berg; Winther, Ole; Laws, Florian

    2017-01-01

    We present CloudScan; an invoice analysis system that requires zero configuration or upfront annotation. In contrast to previous work, CloudScan does not rely on templates of invoice layout, instead it learns a single global model of invoices that naturally generalizes to unseen invoice layouts. ...

  8. Microprocessor system to recover data from a self-scanning photodiode array

    International Nuclear Information System (INIS)

    Koppel, L.N.; Gadd, T.J.

    1975-01-01

    A microprocessor system developed at Lawrence Livermore Laboratory has expedited the recovery of data describing the low energy x-ray spectra radiated by laser-fusion targets. An Intel microprocessor controls the digitization and scanning of the data stream of an x-ray-sensitive self-scanning photodiode array incorporated in a crystal diffraction spectrometer

  9. Evaluation of anthropometric accuracy and reliability using different three-dimensional scanning systems

    NARCIS (Netherlands)

    Fourie, Zacharias; Damstra, Janalt; Gerrits, Peter O.; Ren, Yijin

    2011-01-01

    The aim of this study was to evaluate the accuracy and reliability of standard anthropometric linear measurements made with three different three-dimensional scanning systems namely laser surface scanning (Minolta Vivid 900), cone beam computed tomography (CBCT), 3D stereo-photogrammetry (Di3D

  10. A survey on barcode RFID and NFC

    Science.gov (United States)

    Thanapal, P.; Prabhu, J.; Jakhar, Mridula

    2017-11-01

    Over the recent years, many industries have started implementing new technologies for tracing and tracking their products. These technologies are a kind of blessing to their management system. The technology and management system has to work in parallel to avoid loopholes in the system. We can see so many technologies around us and the most difficult and important part is to choose best out of all these new technologies. The important point which we need to take care while choosing a technology for the system is to make sure the technology can integrate properly with the other parameters in the management system. The industry management system consists of many levels such as initial level, intermediate level, final level and tracking. Nowadays tracking a product from its initial stage is becoming a trend. To cope up with this upcoming trend and also with the company demand, integrating the product with Barcode, RFID tags, NFC tag or any other traceable technology. Many supply chain Management system are also adopting this techniques.

  11. Phantom verification for a ring-scanning and prone diffuse optical imaging system

    Science.gov (United States)

    Yu, Jhao-Ming; Pan, Min-Chun; Chen, Liang-Yu; Pan, Min-Cheng; Hsu, Ya-Fen

    2017-12-01

    In this study, we proposed and implemented a ring-scanning mechanism in the prone position for application in breast tumour detection. The current scanning module using two zones with three light sources in each zone enables the acquisition of 36 source and 30 detection data (36S × 30D) items during the optical information collection phase. This study employed only three photomultiplier tubes (PMTs), instead of 30 PMTs used in a fixed model. In particular, the circular scanning of source-and-detection module actually behaves as more channels and can acquire more optoelectrical data as the scanning module operates in a fractional motion of a single channel-to-channel span. In this study, the optoelectrical measurement system was first calibrated; then, the feasibility of optical-coefficient image reconstruction was verified using several heterogeneous cylindrical phantoms. The reconstructed μa and μs ‧ images through multilayer scanning presented good outcomes, implying that the developed system is promising for 3D scanning of breasts. In a quantitative analysis, the contrast-to-noise ratios of the μa and μs ‧ images (6.00 and 4.97, respectively) for the flexible scanning scheme were superior to those derived for the fixed scheme (5.05 and 4.31, respectively). This indicates that the higher amount of detection information obtained through the proposed scanning module can enhance the spatial resolution of the reconstructed images while retaining an acceptable scanning time.

  12. Profilographic detection system for single-track scanning device

    International Nuclear Information System (INIS)

    Silar, J.; Kula, J.

    1988-01-01

    A profilographic detection system is claimed for diagnosing the renal function by isotope nephrography, and the bladder filling in small children and infants. The configuration described guarantees good position resolution and sensitivity of the detection system. (E.J.). 2 figs

  13. DNA barcode of Chaetognatha from Indian waters

    Digital Repository Service at National Institute of Oceanography (India)

    Nair, V.R.; Kidangan, F.X.; Prabhu, R.G.; Bucklin, A.; Nair, S.

    Chaetognatha are the second most abundant zooplankton group in the Indian waters Precise identification of the species is critical for biogeographical studies DNA barcodes using mitochondrial cytochrome c oxidase (COI) of seven dominant...

  14. Machine Learned Replacement of N-Labels for Basecalled Sequences in DNA Barcoding.

    Science.gov (United States)

    Ma, Eddie Y T; Ratnasingham, Sujeevan; Kremer, Stefan C

    2018-01-01

    This study presents a machine learning method that increases the number of identified bases in Sanger Sequencing. The system post-processes a KB basecalled chromatogram. It selects a recoverable subset of N-labels in the KB-called chromatogram to replace with basecalls (A,C,G,T). An N-label correction is defined given an additional read of the same sequence, and a human finished sequence. Corrections are added to the dataset when an alignment determines the additional read and human agree on the identity of the N-label. KB must also rate the replacement with quality value of in the additional read. Corrections are only available during system training. Developing the system, nearly 850,000 N-labels are obtained from Barcode of Life Datasystems, the premier database of genetic markers called DNA Barcodes. Increasing the number of correct bases improves reference sequence reliability, increases sequence identification accuracy, and assures analysis correctness. Keeping with barcoding standards, our system maintains an error rate of percent. Our system only applies corrections when it estimates low rate of error. Tested on this data, our automation selects and recovers: 79 percent of N-labels from COI (animal barcode); 80 percent from matK and rbcL (plant barcodes); and 58 percent from non-protein-coding sequences (across eukaryotes).

  15. DNA barcoding insect-host plant associations.

    Science.gov (United States)

    Jurado-Rivera, José A; Vogler, Alfried P; Reid, Chris A M; Petitpierre, Eduard; Gómez-Zurita, Jesús

    2009-02-22

    Short-sequence fragments ('DNA barcodes') used widely for plant identification and inventorying remain to be applied to complex biological problems. Host-herbivore interactions are fundamental to coevolutionary relationships of a large proportion of species on the Earth, but their study is frequently hampered by limited or unreliable host records. Here we demonstrate that DNA barcodes can greatly improve this situation as they (i) provide a secure identification of host plant species and (ii) establish the authenticity of the trophic association. Host plants of leaf beetles (subfamily Chrysomelinae) from Australia were identified using the chloroplast trnL(UAA) intron as barcodes amplified from beetle DNA extracts. Sequence similarity and phylogenetic analyses provided precise identifications of each host species at tribal, generic and specific levels, depending on the available database coverage in various plant lineages. The 76 species of Chrysomelinae included-more than 10 per cent of the known Australian fauna-feed on 13 plant families, with preference for Australian radiations of Myrtaceae (eucalypts) and Fabaceae (acacias). Phylogenetic analysis of beetles shows general conservation of host association but with rare host shifts between distant plant lineages, including a few cases where barcodes supported two phylogenetically distant host plants. The study demonstrates that plant barcoding is already feasible with the current publicly available data. By sequencing plant barcodes directly from DNA extractions made from herbivorous beetles, strong physical evidence for the host association is provided. Thus, molecular identification using short DNA fragments brings together the detection of species and the analysis of their interactions.

  16. System of programs for the analysis of data of scanning the film from bubble chambers

    International Nuclear Information System (INIS)

    Valkarova, A.; Zlatanov, Z.

    1975-01-01

    The system is described of the program for experimental data analysis on scanning and multiple production of charged particles in the bubble chambers. The programs have been written on Fortran for BESM-6 and SDS-6200 computers

  17. Hierarchical, Three-Dimensional Measurement System for Crime Scene Scanning.

    Science.gov (United States)

    Marcin, Adamczyk; Maciej, Sieniło; Robert, Sitnik; Adam, Woźniak

    2017-07-01

    We present a new generation of three-dimensional (3D) measuring systems, developed for the process of crime scene documentation. This measuring system facilitates the preparation of more insightful, complete, and objective documentation for crime scenes. Our system reflects the actual requirements for hierarchical documentation, and it consists of three independent 3D scanners: a laser scanner for overall measurements, a situational structured light scanner for more minute measurements, and a detailed structured light scanner for the most detailed parts of tscene. Each scanner has its own spatial resolution, of 2.0, 0.3, and 0.05 mm, respectively. The results of interviews we have conducted with technicians indicate that our developed 3D measuring system has significant potential to become a useful tool for forensic technicians. To ensure the maximum compatibility of our measuring system with the standards that regulate the documentation process, we have also performed a metrological validation and designated the maximum permissible length measurement error E MPE for each structured light scanner. In this study, we present additional results regarding documentation processes conducted during crime scene inspections and a training session. © 2017 American Academy of Forensic Sciences.

  18. Human abdomen recognition using camera and force sensor in medical robot system for automatic ultrasound scan.

    Science.gov (United States)

    Bin Mustafa, Ammar Safwan; Ishii, Takashi; Matsunaga, Yoshiki; Nakadate, Ryu; Ishii, Hiroyuki; Ogawa, Kouji; Saito, Akiko; Sugawara, Motoaki; Niki, Kiyomi; Takanishi, Atsuo

    2013-01-01

    Physicians use ultrasound scans to obtain real-time images of internal organs, because such scans are safe and inexpensive. However, people in remote areas face difficulties to be scanned due to aging society and physician's shortage. Hence, it is important to develop an autonomous robotic system to perform remote ultrasound scans. Previously, we developed a robotic system for automatic ultrasound scan focusing on human's liver. In order to make it a completely autonomous system, we present in this paper a way to autonomously localize the epigastric region as the starting position for the automatic ultrasound scan. An image processing algorithm marks the umbilicus and mammary papillae on a digital photograph of the patient's abdomen. Then, we made estimation for the location of the epigastric region using the distances between these landmarks. A supporting algorithm distinguishes rib position from epigastrium using the relationship between force and displacement. We implemented these algorithms with the automatic scanning system into an apparatus: a Mitsubishi Electric's MELFA RV-1 six axis manipulator. Tests on 14 healthy male subjects showed the apparatus located the epigastric region with a success rate of 94%. The results suggest that image recognition was effective in localizing a human body part.

  19. Design and construction of a fine drive system for scanning optical elements

    Science.gov (United States)

    Golnabi, H.; Jafari, R.

    2008-09-01

    The design and operation of a simple mechanical drive system, which is able to perform a fine course of angular motion, are reported. The system consists of a lead screw, a drive nut, sine bar legs, and an output shaft that can scan the optical holder mount. With a stepper motor coupled to the lead screw and interfaced to a PC, it is possible to control the scanning operation. When a 800 step/turn motor is used, it is possible to have an angular resolution of about 0.5 mdegree for a dynamic range of about 23°. The reproducibility of the results is about 0.22% for the scan angle and the hysteresis effect of the system is in the range of 1.71%. For a total scan of 51,200 steps, a scan angle of about 23.3° is acheived. The fitted line to the experimental results shows that scan angle changes linearly with the scan length. With good precision in system construction and careful alignment, the overall nonlinearity can be less than 1%.

  20. DNA Barcoding for Minor Crops and Food Traceability

    Directory of Open Access Journals (Sweden)

    Andrea Galimberti

    2014-01-01

    Full Text Available This outlook paper addresses the problem of the traceability of minor crops. These kinds of cultivations consist in a large number of plants locally distributed with a modest production in terms of cultivated acreage and quantity of final product. Because of globalization, the diffusion of minor crops is increasing due to their benefit for human health or their use as food supplements. Such a phenomenon implies a major risk for species substitution or uncontrolled admixture of manufactured plant products with severe consequences for the health of consumers. The need for a reliable identification system is therefore essential to evaluate the quality and provenance of minor agricultural products. DNA-based techniques can help in achieving this mission. In particular, the DNA barcoding approach has gained a role of primary importance thanks to its universality and versatility. Here, we present the advantages in the use of DNA barcoding for the characterization and traceability of minor crops based on our previous or ongoing studies at the ZooPlantLab (Milan, Italy. We also discuss how DNA barcoding may potentially be transferred from the laboratory to the food supply chain, from field to table.

  1. Imaging systems in the Delft Multi-Beam Scanning Electron Microscope 1

    NARCIS (Netherlands)

    Ren, Y.

    2017-01-01

    The goal of this Ph.D. research is to develop imaging systems for the multiple beam scanning electron microscope (MBSEM) built in Delft University of Technology. This thesis includes two imaging systems, transmission electron (TE) imaging system, and secondary electron (SE) imaging system. The major

  2. Hardware performance of a scanning system for high speed analysis of nuclear emulsions

    CERN Document Server

    Arrabito, L; Bozza, C; Buontempo, S; Consiglio, L; Coppola, D; Cozzi, M; Damet, J; D'Ambrosio, N; De Lellis, G; De Serio, M; Capua, F D; Ferdinando, D D; Marco, N D; Esposito, L S; Giacomelli, G; Grella, G; Hauger, M; Juget, F; Kreslo, I; Giorgini, M; Ieva, M; Laktineh, I; Manai, K; Mandrioli, G; Marotta, A; Manzoor, S; Migliozzi, P; Monacelli, P; Muciaccia, M T; Pastore, A; Patrizii, L; Pistillo, C; Pozzato, M; Royole-Degieux, P; Romano, G; Rosa, G; Savvinov, N; Schembri, A; Lavina, L S; Simone, S; Sioli, M; Sirignano, C; Sirri, G; Sorrentino, G; Strolin, P; Tioukov, V; Waelchli, T

    2006-01-01

    The use of nuclear emulsions in very large physics experiments is now possible thanks to the recent improvements in the industrial production of emulsions and to the development of fast automated microscopes. In this paper the hardware performances of the European Scanning System (ESS) are described. The ESS is a very fast automatic system developed for the mass scanning of the emulsions of the OPERA experiment, which requires microscopes with scanning speeds of about 20 cm^2/h in an emulsion volume of 44 micron thickness.

  3. Identification of Hafnia alvei with the MicroScan WalkAway System

    Science.gov (United States)

    Rodríguez, L. A.; Vivas, J.; Gallardo, C. S.; Acosta, F.; Barbeyto, L.; Real, F.

    1999-01-01

    Hafnia alvei is a gram-negative facultatively anaerobic bacillus that belongs to the family Enterobacteriaceae. This organism is a causative agent of intestinal disorders and is found in different environments. H. alvei has received increased clinical attention as a cause of different infections in humans. This study was performed to compare the MicroScan WalkAway automated identification system in conjunction with the new MicroScan Combo Negative type 1S panels with conventional biochemical methods for identification of 21 H. alvei strains. The MicroScan WalkAway system was found capable of correctly identifying 20 of the 21 strains tested. PMID:10565961

  4. Scoring system for CT scan findings of ovarian cystic lesions

    Energy Technology Data Exchange (ETDEWEB)

    Hattori, Kaoru

    1987-09-01

    It is important to preoperatively establish a diagnosis of a gynecologic pelvic mass. A group of 137 female patients with suspected pelvic cystic lesions were studied by computerized tomography (CT). Histologically, 22 patients were proved to have ovarian cystadenocarcinoma and 115 patients a benign cystic mass, i.e. cystadenoma, lutein cyst, endometrial cyst, retentional cyst and paraovarian cyst. A scoring system was made to obtain higher accuracy in CT evaluation of ovarian cystic lesions. It includes seven factors, (1) volume, (2) solid component protruding from the wall, (3) thickness of the wall, (4) focal thickening of the wall, (5) loculation, (6) attenuation number of the tumor and (7) nonhomogenousess of the tumor. Using this scoring system, a correct differential diagnosis was made in all cases except 7, 4 uterine fibroids with remarkable degenaration, a large endometrial cyst with a high attenuation number, a dermoid cyst with an irregular pattern and a mucinous cystadenoma with benign solid component. The accuracy of diagnosis was 100 % in malignant masses and 93.9 % in benign masses. This scoring system was shown to have clinical significance for the differential diagnosis of a pelvic cystic lesions.

  5. Performances of the scanning system for the CNAO center of oncological hadron therapy

    CERN Document Server

    Giordanengo, S; Attili, A; Pardo, J; Russo, G; Taddia, G; Monaco, V; Garella, M A; Zampieri, A; Fabbricatore, P; Cirio, R; Voelker, F; Sacchi, R; Bourhaleb, F; Marchetto, F; Burini, F; Incurvati, M; Ansarinejad, A; Peroni, C

    2010-01-01

    In hadron therapy one of the most advanced methods for beam delivery is the active scanning technique which uses fast scanning magnets to drive a narrow particle beam across the target. The Centro Nazionale di Adroterapia Oncologica (CNAO) will treat tumours with this technique. The CNAO scanning system includes two identical dipole magnets for horizontal and vertical beam deflection, each one connected to a fast power supply. The dose delivery system exploits a set of monitor chambers to measure the fluence and position of the beam and drives the beam during the treatment by controlling the sequence of currents set by the power supplies. A test of the dynamic performance of the scanning system has been performed using a Hall probe to measure the field inside the magnet and the results are presented in this paper. (C) 2009 Elsevier B.V. All rights reserved.

  6. Albumin microaggregates for radioactive scanning of reticuloendothelial systems

    International Nuclear Information System (INIS)

    Saklad, E.L.

    1980-01-01

    An agent is described for radioactively imaging the reticuloendothelial system (RES) of vertebrates, especially primates, particularly the liver, spleen and bone marrow. The RES agent consists of a sup(99m)Tc-labelled microaggregated complex of a reducing metal and albumin to the unlabelled microaggregated complex in the form of a kit. The agent may also contain a stabilizing ligand for the reducing metal, e.g. a phosphonate, phosphate, aminocarboxylate, polyhydroxycarboxylate or polycarboxylates. The methods of preparing the agent and using it for RES imaging are described. (U.K.)

  7. Integral force feedback control with input shaping: Application to piezo-based scanning systems in ECDLs

    Science.gov (United States)

    Zhang, Meng; Liu, Zhigang; Zhu, Yu; Bu, Mingfan; Hong, Jun

    2017-07-01

    In this paper, a hybrid control system is developed by integrating the closed-loop force feedback and input shaping method to overcome the problem of the hysteresis and dynamic behavior in piezo-based scanning systems and increase the scanning speed of tunable external cavity diode lasers. The flexible hinge and piezoelectric actuators are analyzed, and a dynamic model of the scanning systems is established. A force sensor and an integral controller are utilized in integral force feedback (IFF) to directly augment the damping of the piezoelectric scanning systems. Hysteresis has been effectively eliminated, but the mechanical resonance is still evident. Noticeable residual vibration occurred after the inflection points and then gradually disappeared. For the further control of mechanical resonance, based on the theory of minimum-acceleration trajectory planning, the time-domain input shaping method was developed. The turning sections of a scanning trajectory are replaced by smooth curves, while the linear sections are retained. The IFF method is combined with the input shaping method to control the non-linearity and mechanical resonance in high-speed piezo-based scanning systems. Experiments are conducted, and the results demonstrate the effectiveness of the proposed control approach.

  8. Laser scanning graphic system for multimedia podium presentations

    Science.gov (United States)

    Gadhok, Jagmohan S.; Belur, Raghu R.; Strganac, Thomas W.; Junkins, John L.

    1997-07-01

    The present paper introduces new electro-optical sensing technology for electronic blackboard and related passive stereo measurement applications. The electronic blackboard enables real-time digitization of hand-written and hand-drawn information using a totally passive writing surface and writing instrument. Two resonant laser scanners sweep out a plane, the angular position of the two beams (at the instants that the beams are interrupted by the laser beams of a hand- held stylus such as a felt tip marker) are detected. These data are used to digitize coordinates along hand-drawn lines with high precision (approximately 1 part in 25,000) and digitization rates (approximately 160 Hz). The data input surface dimensions vary from small to large (permitting digitization on wall-sized writing surfaces as large as 2 meters by 6 meters) thus enabling a new family of applications. In particular, we discuss a novel application of this laser digitizing system to the automation of class or conference room presentations, and the authors describe a newly developed multimedia podium for classroom presentations. Other applications exist in emerging multi-media systems, manufacturing and robotics, large area digitizing for the drafting market, and automated note taking for the education market.

  9. The Effects of Bar-coding Technology on Medication Errors: A Systematic Literature Review.

    Science.gov (United States)

    Hutton, Kevin; Ding, Qian; Wellman, Gregory

    2017-02-24

    The bar-coding technology adoptions have risen drastically in U.S. health systems in the past decade. However, few studies have addressed the impact of bar-coding technology with strong prospective methodologies and the research, which has been conducted from both in-pharmacy and bedside implementations. This systematic literature review is to examine the effectiveness of bar-coding technology on preventing medication errors and what types of medication errors may be prevented in the hospital setting. A systematic search of databases was performed from 1998 to December 2016. Studies measuring the effect of bar-coding technology on medication errors were included in a full-text review. Studies with the outcomes other than medication errors such as efficiency or workarounds were excluded. The outcomes were measured and findings were summarized for each retained study. A total of 2603 articles were initially identified and 10 studies, which used prospective before-and-after study design, were fully reviewed in this article. Of the 10 included studies, 9 took place in the United States, whereas the remaining was conducted in the United Kingdom. One research article focused on bar-coding implementation in a pharmacy setting, whereas the other 9 focused on bar coding within patient care areas. All 10 studies showed overall positive effects associated with bar-coding implementation. The results of this review show that bar-coding technology may reduce medication errors in hospital settings, particularly on preventing targeted wrong dose, wrong drug, wrong patient, unauthorized drug, and wrong route errors.

  10. Study on measurement of leading and trailing edges of blades based on optical scanning system

    Science.gov (United States)

    Chao, Bi; Liu, Hongguang; Bao, Longxiang; Li, Di

    2017-10-01

    In the field of aeronautics, the geometry and dimensional accuracy of the blade edges has a large influence on the aerodynamic performance of aero engine. Therefore, a non-contact optical scanning system is established to realize the measurement of leading and trailing edges of blades in a rapid, precise and efficient manner in the paper. Based on the mechanical framework of a traditional CMM, the system is equipped with a specified sensing device as the scanning probe, which is made up by two new-style laser scanning sensors installed at a certain angle to each other by a holder. In the measuring procedure, the geometric dimensions of the measured blade edges on every contour plane are determined by the contour information on five transversals at the leading or trailing edges, which can be used to determine the machining allowance of the blades. In order to verify the effectiveness and practicality of the system set up, a precision forging blade after grinded is adopted as the measured object and its leading and trailing edges are measured by the system respectively. In the experiment, the thickness of blade edges on three contour planes is measured by the optical scanning system several times. As the experiment results show, the repeatability accuracy of the system can meet its design requirements and the inspecting demands of the blade edges. As a result, the optical scanning system could serve as a component of the intelligent manufacturing system of blades to improve the machining quality of the blade edges.

  11. Ferret: a sentence-based literature scanning system.

    Science.gov (United States)

    Srinivasan, Padmini; Zhang, Xiao-Ning; Bouten, Roxane; Chang, Caren

    2015-06-20

    The rapid pace of bioscience research makes it very challenging to track relevant articles in one's area of interest. MEDLINE, a primary source for biomedical literature, offers access to more than 20 million citations with three-quarters of a million new ones added each year. Thus it is not surprising to see active research in building new document retrieval and sentence retrieval systems. We present Ferret, a prototype retrieval system, designed to retrieve and rank sentences (and their documents) conveying gene-centric relationships of interest to a scientist. The prototype has several features. For example, it is designed to handle gene name ambiguity and perform query expansion. Inputs can be a list of genes with an optional list of keywords. Sentences are retrieved across species but the species discussed in the records are identified. Results are presented in the form of a heat map and sentences corresponding to specific cells of the heat map may be selected for display. Ferret is designed to assist bio scientists at different stages of research from early idea exploration to advanced analysis of results from bench experiments. Three live case studies in the field of plant biology are presented related to Arabidopsis thaliana. The first is to discover genes that may relate to the phenotype of open immature flower in Arabidopsis. The second case is about finding associations reported between ethylene signaling and a set of 300+ Arabidopsis genes. The third case is on searching for potential gene targets of an Arabidopsis transcription factor hypothesized to be involved in plant stress responses. Ferret was successful in finding valuable information in all three cases. In the first case the bZIP family of genes was identified. In the second case sentences indicating relevant associations were found in other species such as potato and jasmine. In the third sentences led to new research questions about the plant hormone salicylic acid. Ferret successfully

  12. Scanning system for chest radiography with regional exposure control: Practical implementation

    International Nuclear Information System (INIS)

    Plewes, D.B.; Vogelstein, E.

    1983-01-01

    An experimental scanning apparatus for chest radiography is described which offers good scatter rejection and regional manipulation of film exposure. The apparatus is capable of studying two scanning geometries that uses either a fan of radiation swept laterally over the film in 5 s or a spot of radiation scanned over two dimensions in a raster pattern in 8.8 s. The manipulation of tube output during the scan is achieved by pulse width modulation with film exposure monitored by a fluorescence detector placed behind the film cassette. Measurements of the scatter rejection properties of the system show that it is superior to that of a 10:1 grid when used with 120-kVp radiation. Phantom images with both geometries demonstrate the capability of the system to improve uniformity of film exposure and soft tissue contrast throughout the mediastinal, diaphragmatic, and retrocardiac areas. The relative characteristics of the one- versus two-dimension scan geometries are given. Clinical raster images formed with the 8.8-s scan time show signs of motion unsharpness which becomes insignificant when the scan time is reduced to 4.5 s

  13. Scanning system for chest radiography with regional exposure control: practical implementation

    International Nuclear Information System (INIS)

    Plewes, D.B.; Vogelstein, E.

    1983-01-01

    An experimental scanning apparatus for chest radiography is described which offers good scatter rejection and regional manipulation of film exposure. The apparatus is capable of studying two scanning geometries that uses either a fan of radiation swept laterally over the film in 5s or a spot of radiation scanned over two dimensions in a raster pattern in 8.8s. The manipulation of tube output during the scan is achieved by pulse width modulation with film exposure monitored by a fluorescence detector placed behind the film cassette. Measurement of the scatter rejection properties of the system show that it is superior to that of a 10:1 grid when used with 120-kVp radiation. Phantom images with both geometries demonstrate the capability of the system to improve uniformity of film exposure and soft tissue contrast throughout the mediastinal, diaphragmatic, and retrocardiac areas. The relative characteristics of the one- versus two-dimension scan geometries are given. Clinical raster images formed with the 8.8-s scan time show signs of motion unsharpness which becomes insignificant when the scan time is reduced to 4.5 s

  14. Review of P-scan computer-based ultrasonic inservice inspection system. Supplement 1

    International Nuclear Information System (INIS)

    Harris, R.V. Jr.; Angel, L.J.

    1995-12-01

    This Supplement reviews the P-scan system, a computer-based ultrasonic system used for inservice inspection of piping and other components in nuclear power plants. The Supplement was prepared using the methodology described in detail in Appendix A of NUREG/CR-5985, and is based on one month of using the system in a laboratory. This Supplement describes and characterizes: computer system, ultrasonic components, and mechanical components; scanning, detection, digitizing, imaging, data interpretation, operator interaction, data handling, and record-keeping. It includes a general description, a review checklist, and detailed results of all tests performed

  15. A very low-cost 3D scanning system for whole-body imaging

    Science.gov (United States)

    Straub, Jeremy; Kerlin, Scott

    2015-05-01

    A low-cost, high resolution 3D scanning system has been developed at the University of North Dakota that creates 3D models (complete with color and texture data) using hardware and software with a cost of approximately $5,000. This paper presents the design, testing and initial uses for this scanning hardware; it also discusses the efficacy of this technology for a variety of applications and the utility of being able to capture high-quality scans at low cost. A discussion of the required operating conditions and the limitations that this places on the applications the scanner is suitable for is also included.

  16. Design and verification of the miniature optical system for small object surface profile fast scanning

    Science.gov (United States)

    Chi, Sheng; Lee, Shu-Sheng; Huang, Jen, Jen-Yu; Lai, Ti-Yu; Jan, Chia-Ming; Hu, Po-Chi

    2016-04-01

    As the progress of optical technologies, different commercial 3D surface contour scanners are on the market nowadays. Most of them are used for reconstructing the surface profile of mold or mechanical objects which are larger than 50 mm×50 mm× 50 mm, and the scanning system size is about 300 mm×300 mm×100 mm. There are seldom optical systems commercialized for surface profile fast scanning for small object size less than 10 mm×10 mm×10 mm. Therefore, a miniature optical system has been designed and developed in this research work for this purpose. Since the most used scanning method of such system is line scan technology, we have developed pseudo-phase shifting digital projection technology by adopting projecting fringes and phase reconstruction method. A projector was used to project a digital fringe patterns on the object, and the fringes intensity images of the reference plane and of the sample object were recorded by a CMOS camera. The phase difference between the plane and object can be calculated from the fringes images, and the surface profile of the object was reconstructed by using the phase differences. The traditional phase shifting method was accomplished by using PZT actuator or precisely controlled motor to adjust the light source or grating and this is one of the limitations for high speed scanning. Compared with the traditional optical setup, we utilized a micro projector to project the digital fringe patterns on the sample. This diminished the phase shifting processing time and the controlled phase differences between the shifted phases become more precise. Besides, the optical path design based on a portable device scanning system was used to minimize the size and reduce the number of the system components. A screwdriver section about 7mm×5mm×5mm has been scanned and its surface profile was successfully restored. The experimental results showed that the measurement area of our system can be smaller than 10mm×10mm, the precision reached to

  17. Microgamma Scan System for analyzing radial isotopic profiles of irradiated transmutation fuels

    International Nuclear Information System (INIS)

    Hilton, Bruce A.; McGrath, Christopher A.

    2008-01-01

    The U. S. Global Nuclear Energy Partnership / Advanced Fuel Cycle Initiative (GNEP/AFCI) is developing metallic transmutation alloys as a fuel form to transmute the long-lived transuranic actinide isotopes contained in spent nuclear fuel into shorter-lived fission products. A micro-gamma scan system is being developed to analyze the radial distribution of fission products, such as Cs-137, Cs-134, Ru-106, and Zr-95, in irradiated fuel cross-sections. The micro-gamma scan system consists of a precision linear stage with integrated sample holder and a tungsten alloy collimator, which interfaces with the Idaho National Laboratory (INL) Analytical Laboratory Hot Cell (ALHC) Gamma Scan System high purity germanium detector, multichannel analyzer, and removable collimators. A simplified model of the micro-gamma scan system was developed in MCNP (Monte-Carlo N-Particle Transport Code) and used to investigate the system performance and to interpret data from the scoping studies. Preliminary measurements of the micro-gamma scan system are discussed. (authors)

  18. Bio-physical effects of scanned proton beams: measurements and models for discrete high dose rates scanning systems

    International Nuclear Information System (INIS)

    De-Marzi, Ludovic

    2016-01-01

    The main objective of this thesis is to develop and optimize algorithms for intensity modulated proton therapy, taking into account the physical and biological pencil beam properties. A model based on the summation and fluence weighted division of the pencil beams has been used. A new parameterization of the lateral dose distribution has been developed using a combination of three Gaussian functions. The algorithms have been implemented into a treatment planning system, then experimentally validated and compared with Monte Carlo simulations. Some approximations have been made and validated in order to achieve reasonable calculation times for clinical purposes. In a second phase, a collaboration with Institut Curie radiobiological teams has been started in order to implement radiobiological parameters and results into the optimization loop of the treatment planning process. Indeed, scanned pencil beams are pulsed and delivered at high dose rates (from 10 to 100 Gy/s), and the relative biological efficiency of protons is still relatively unknown given the wide diversity of use of these beams: the different models available and their dependence with linear energy transfers have been studied. A good agreement between dose calculations and measurements (deviations lower than 3 % and 2 mm) has been obtained. An experimental protocol has been set in order to qualify pulsed high dose rate effects and preliminary results obtained on one cell line suggested variations of the biological efficiency up to 10 %, though with large uncertainties. (author) [fr

  19. DNA barcoding of Canada's skates.

    Science.gov (United States)

    Coulson, M W; Denti, D; Van Guelpen, L; Miri, C; Kenchington, E; Bentzen, P

    2011-11-01

    DNA-based identifications have been employed across broad taxonomic ranges and provide an especially useful tool in cases where external identification may be problematic. This study explored the utility of DNA barcoding in resolving skate species found in Atlantic Canadian waters. Most species were clearly resolved, expanding the utility for such identification on a taxonomically problematic group. Notably, one genus (Amblyraja) contained three of four species whose distributions do not overlap that could not be readily identified with this method. On the other hand, two common and partially sympatric species (Little and Winter skates) were readily identifiable. There were several instances of inconsistency between the voucher identification and the DNA sequence data. In some cases, these were at the intrageneric level among species acknowledged to be prone to misidentification. However, several instances of intergeneric discrepancies were also identified, suggesting either evidence of past introgressive hybridization or misidentification of vouchered specimens across broader taxonomic ranges. Such occurrences highlight the importance of retaining vouchered specimens for subsequent re-examination in the light of conflicting DNA evidence. © 2011 Blackwell Publishing Ltd.

  20. TECHNICAL DESIGN NOTE: Currency verification by a 2D infrared barcode

    Science.gov (United States)

    Schirripa Spagnolo, Giuseppe; Cozzella, Lorenzo; Simonetti, Carla

    2010-10-01

    Nowadays all the National Central Banks are continuously studying innovative anti-counterfeiting systems for banknotes. In this note, an innovative solution is proposed, which combines the potentiality of a hylemetric approach (methodology conceptually similar to biometry), based on notes' intrinsic characteristics, with a well-known and consolidated 2D barcode identification system. In particular, in this note we propose to extract from the banknotes a univocal binary control sequence (template) and insert an encrypted version of it in a barcode printed on the same banknote. For a more acceptable look and feel of a banknote, the superposed barcode can be stamped using IR ink that is visible to near-IR image sensors. This makes the banknote verification simpler.

  1. Scan statistics with local vote for target detection in distributed system

    Science.gov (United States)

    Luo, Junhai; Wu, Qi

    2017-12-01

    Target detection has occupied a pivotal position in distributed system. Scan statistics, as one of the most efficient detection methods, has been applied to a variety of anomaly detection problems and significantly improves the probability of detection. However, scan statistics cannot achieve the expected performance when the noise intensity is strong, or the signal emitted by the target is weak. The local vote algorithm can also achieve higher target detection rate. After the local vote, the counting rule is always adopted for decision fusion. The counting rule does not use the information about the contiguity of sensors but takes all sensors' data into consideration, which makes the result undesirable. In this paper, we propose a scan statistics with local vote (SSLV) method. This method combines scan statistics with local vote decision. Before scan statistics, each sensor executes local vote decision according to the data of its neighbors and its own. By combining the advantages of both, our method can obtain higher detection rate in low signal-to-noise ratio environment than the scan statistics. After the local vote decision, the distribution of sensors which have detected the target becomes more intensive. To make full use of local vote decision, we introduce a variable-step-parameter for the SSLV. It significantly shortens the scan period especially when the target is absent. Analysis and simulations are presented to demonstrate the performance of our method.

  2. International Barcode of Life Project : Engaging Developing Nations ...

    International Development Research Centre (IDRC) Digital Library (Canada)

    DNA barcoding is a new tool for taxonomic research. The DNA barcode is a very short standardized DNA sequence in a well-known gene. It provides a secure and less complicated way of identifying the species to which an animal, plant or fungus belongs than traditional observation. The barcoding tool was developed by ...

  3. Conjugate whole-body scanning system for quantitative measurement of organ distribution in vivo

    International Nuclear Information System (INIS)

    Tsui, B.M.W.; Chen, C.T.; Yasillo, N.J.; Ortega, C.J.; Charleston, D.B.; Lathrop, K.A.

    1979-01-01

    The determination of accurate, quantitative, biokinetic distribution of an internally dispersed radionuclide in humans is important in making realistic radiation absorbed dose estimates, studying biochemical transformations in health and disease, and developing clinical procedures indicative of abnormal functions. In order to collect these data, a whole-body imaging system is required which provides both adequate spatial resolution and some means of absolute quantitation. Based on these considerations, a new whole-body scanning system has been designed and constructed that employs the conjugate counting technique. The conjugate whole-body scanning system provides an efficient and accurate means of collecting absolute quantitative organ distribution data of radioactivity in vivo

  4. Georeferenced Scanning System to Estimate the Leaf Wall Area in Tree Crops

    Directory of Open Access Journals (Sweden)

    Ignacio del-Moral-Martínez

    2015-04-01

    Full Text Available This paper presents the use of a terrestrial light detection and ranging (LiDAR system to scan the vegetation of tree crops to estimate the so-called pixelated leaf wall area (PLWA. Scanning rows laterally and considering only the half-canopy vegetation to the line of the trunks, PLWA refers to the vertical projected area without gaps detected by LiDAR. As defined, PLWA may be different depending on the side from which the LiDAR is applied. The system is completed by a real-time kinematic global positioning system (RTK-GPS sensor and an inertial measurement unit (IMU sensor for positioning. At the end, a total leaf wall area (LWA is computed and assigned to the X, Y position of each vertical scan. The final value of the area depends on the distance between two consecutive scans (or horizontal resolution, as well as the number of intercepted points within each scan, since PLWA is only computed when the laser beam detects vegetation. To verify system performance, tests were conducted related to the georeferencing task and synchronization problems between GPS time and central processing unit (CPU time. Despite this, the overall accuracy of the system is generally acceptable. The Leaf Area Index (LAI can then be estimated using PLWA as an explanatory variable in appropriate linear regression models.

  5. Georeferenced scanning system to estimate the leaf wall area in tree crops.

    Science.gov (United States)

    del-Moral-Martínez, Ignacio; Arnó, Jaume; Escolà, Alexandre; Sanz, Ricardo; Masip-Vilalta, Joan; Company-Messa, Joaquim; Rosell-Polo, Joan R

    2015-04-10

    This paper presents the use of a terrestrial light detection and ranging (LiDAR) system to scan the vegetation of tree crops to estimate the so-called pixelated leaf wall area (PLWA). Scanning rows laterally and considering only the half-canopy vegetation to the line of the trunks, PLWA refers to the vertical projected area without gaps detected by LiDAR. As defined, PLWA may be different depending on the side from which the LiDAR is applied. The system is completed by a real-time kinematic global positioning system (RTK-GPS) sensor and an inertial measurement unit (IMU) sensor for positioning. At the end, a total leaf wall area (LWA) is computed and assigned to the X, Y position of each vertical scan. The final value of the area depends on the distance between two consecutive scans (or horizontal resolution), as well as the number of intercepted points within each scan, since PLWA is only computed when the laser beam detects vegetation. To verify system performance, tests were conducted related to the georeferencing task and synchronization problems between GPS time and central processing unit (CPU) time. Despite this, the overall accuracy of the system is generally acceptable. The Leaf Area Index (LAI) can then be estimated using PLWA as an explanatory variable in appropriate linear regression models.

  6. A checklist of the bats of Peninsular Malaysia and progress towards a DNA barcode reference library.

    Science.gov (United States)

    Lim, Voon-Ching; Ramli, Rosli; Bhassu, Subha; Wilson, John-James

    2017-01-01

    Several published checklists of bat species have covered Peninsular Malaysia as part of a broader region and/or in combination with other mammal groups. Other researchers have produced comprehensive checklists for specific localities within the peninsula. To our knowledge, a comprehensive checklist of bats specifically for the entire geopolitical region of Peninsular Malaysia has never been published, yet knowing which species are present in Peninsular Malaysia and their distributions across the region are crucial in developing suitable conservation plans. Our literature search revealed that 110 bat species have been documented in Peninsular Malaysia; 105 species have precise locality records while five species lack recent and/or precise locality records. We retrieved 18 species from records dated before the year 2000 and seven species have only ever been recorded once. Our search of Barcode of Life Datasystems (BOLD) found that 86 (of the 110) species have public records of which 48 species have public DNA barcodes available from bats sampled in Peninsular Malaysia. Based on Neighbour-Joining tree analyses and the allocation of DNA barcodes to Barcode Index Number system (BINs) by BOLD, several DNA barcodes recorded under the same species name are likely to represent distinct taxa. We discuss these cases in detail and highlight the importance of further surveys to determine the occurences and resolve the taxonomy of particular bat species in Peninsular Malaysia, with implications for conservation priorities.

  7. DNA Barcode Analysis of Thrips (Thysanoptera Diversity in Pakistan Reveals Cryptic Species Complexes.

    Directory of Open Access Journals (Sweden)

    Romana Iftikhar

    Full Text Available Although thrips are globally important crop pests and vectors of viral disease, species identifications are difficult because of their small size and inconspicuous morphological differences. Sequence variation in the mitochondrial COI-5' (DNA barcode region has proven effective for the identification of species in many groups of insect pests. We analyzed barcode sequence variation among 471 thrips from various plant hosts in north-central Pakistan. The Barcode Index Number (BIN system assigned these sequences to 55 BINs, while the Automatic Barcode Gap Discovery detected 56 partitions, a count that coincided with the number of monophyletic lineages recognized by Neighbor-Joining analysis and Bayesian inference. Congeneric species showed an average of 19% sequence divergence (range = 5.6% - 27% at COI, while intraspecific distances averaged 0.6% (range = 0.0% - 7.6%. BIN analysis suggested that all intraspecific divergence >3.0% actually involved a species complex. In fact, sequences for three major pest species (Haplothrips reuteri, Thrips palmi, Thrips tabaci, and one predatory thrips (Aeolothrips intermedius showed deep intraspecific divergences, providing evidence that each is a cryptic species complex. The study compiles the first barcode reference library for the thrips of Pakistan, and examines global haplotype diversity in four important pest thrips.

  8. Highlights of DNA Barcoding in identification of salient microorganisms like fungi.

    Science.gov (United States)

    Dulla, E L; Kathera, C; Gurijala, H K; Mallakuntla, T R; Srinivasan, P; Prasad, V; Mopati, R D; Jasti, P K

    2016-12-01

    Fungi, the second largest kingdom of eukaryotic life, are diverse and widespread. Fungi play a distinctive role in the production of different products on industrial scale, like fungal enzymes, antibiotics, fermented foods, etc., to give storage stability and improved health to meet major global challenges. To utilize algae perfectly for human needs, and to pave the way for getting a healthy relationship with fungi, it is important to identify them in a quick and robust manner with molecular-based identification system. So, there is a technique that aims to provide a well-organized method for species level identifications and to contribute powerfully to taxonomic and biodiversity research is DNA Barcoding. DNA Barcoding is generally achieved by the retrieval of a short DNA sequence - the 'barcode' - from a standard part of the genome and that barcode is then compared with a library of reference barcode sequences derived from individuals of known identity for identification. Copyright © 2016 Elsevier Masson SAS. All rights reserved.

  9. VIP Barcoding: composition vector-based software for rapid species identification based on DNA barcoding.

    Science.gov (United States)

    Fan, Long; Hui, Jerome H L; Yu, Zu Guo; Chu, Ka Hou

    2014-07-01

    Species identification based on short sequences of DNA markers, that is, DNA barcoding, has emerged as an integral part of modern taxonomy. However, software for the analysis of large and multilocus barcoding data sets is scarce. The Basic Local Alignment Search Tool (BLAST) is currently the fastest tool capable of handling large databases (e.g. >5000 sequences), but its accuracy is a concern and has been criticized for its local optimization. However, current more accurate software requires sequence alignment or complex calculations, which are time-consuming when dealing with large data sets during data preprocessing or during the search stage. Therefore, it is imperative to develop a practical program for both accurate and scalable species identification for DNA barcoding. In this context, we present VIP Barcoding: a user-friendly software in graphical user interface for rapid DNA barcoding. It adopts a hybrid, two-stage algorithm. First, an alignment-free composition vector (CV) method is utilized to reduce searching space by screening a reference database. The alignment-based K2P distance nearest-neighbour method is then employed to analyse the smaller data set generated in the first stage. In comparison with other software, we demonstrate that VIP Barcoding has (i) higher accuracy than Blastn and several alignment-free methods and (ii) higher scalability than alignment-based distance methods and character-based methods. These results suggest that this platform is able to deal with both large-scale and multilocus barcoding data with accuracy and can contribute to DNA barcoding for modern taxonomy. VIP Barcoding is free and available at http://msl.sls.cuhk.edu.hk/vipbarcoding/. © 2014 John Wiley & Sons Ltd.

  10. Ultra-barcoding in cacao (Theobroma spp.; Malvaceae) using whole chloroplast genomes and nuclear ribosomal DNA.

    Science.gov (United States)

    Kane, Nolan; Sveinsson, Saemundur; Dempewolf, Hannes; Yang, Ji Yong; Zhang, Dapeng; Engels, Johannes M M; Cronk, Quentin

    2012-02-01

    To reliably identify lineages below the species level such as subspecies or varieties, we propose an extension to DNA-barcoding using next-generation sequencing to produce whole organellar genomes and substantial nuclear ribosomal sequence. Because this method uses much longer versions of the traditional DNA-barcoding loci in the plastid and ribosomal DNA, we call our approach ultra-barcoding (UBC). We used high-throughput next-generation sequencing to scan the genome and generate reliable sequence of high copy number regions. Using this method, we examined whole plastid genomes as well as nearly 6000 bases of nuclear ribosomal DNA sequences for nine genotypes of Theobroma cacao and an individual of the related species T. grandiflorum, as well as an additional publicly available whole plastid genome of T. cacao. All individuals of T. cacao examined were uniquely distinguished, and evidence of reticulation and gene flow was observed. Sequence variation was observed in some of the canonical barcoding regions between species, but other regions of the chloroplast were more variable both within species and between species, as were ribosomal spacers. Furthermore, no single region provides the level of data available using the complete plastid genome and rDNA. Our data demonstrate that UBC is a viable, increasingly cost-effective approach for reliably distinguishing varieties and even individual genotypes of T. cacao. This approach shows great promise for applications where very closely related or interbreeding taxa must be distinguished.

  11. Nondestructive x-ray microanalysis bidirectional scanning and data acquisition system

    Energy Technology Data Exchange (ETDEWEB)

    Lawson, R.L.

    1989-09-12

    A system for making fast scans of specimens and acquiring data was developed at the oak Ridge Y-12 Plant. An LSI 11/23 computer using the RT11 operating system controls the scan and data acquisition. Scan software was written which would program a Unidex III stepping motor controller to make the scan motions while the position was monitored and the data acquired through the computer`s timer/counter boards from the multichannel analyzer`s four region of interest (ROI) outputs. Small areas of a part or specimen are scanned by moving the part back and forth in the x-ray beam using stepping motor actuated tables. A detector receives the scattered x-rays from the part and sends a signal to the multichannel analyzer which digitizes it. After the data has been acquired using the scan computer, the data is then transferred to a PC to where it is processed and an image is generated and displayed for analysis.

  12. Eddy current analysis and optimization of fast scanning magnet for a proton therapy system

    Science.gov (United States)

    Liu, Xu; Qin, Bin; Liu, Kaifeng; Chen, Wei; Liang, Zhikai; Chen, Qushan; Chen, Dezhi; Fan, Mingwu

    2017-08-01

    Proton therapy is now recognized as one of the most effective radiation therapy methods for cancers. A proton therapy facility with multiple gantry treatment rooms is under development in HUST (Huazhong University of Science and Technology), which is based on isochronous superconducting cyclotron scheme. In the beam line, the scanning system spreads out the proton beam on the target according to the complex tumour shape by two scanning magnets for horizontal and vertical scanning independently. Since these two magnets are excited by alternating currents and the maximum repetition frequency is up to 100 Hz, eddy currents and losses are expected to be significant. Slits are proven to be an effective way to reduce the eddy currents. To evaluate the heat distribution due to eddy losses in the pole end of the scanning magnet, the transient electromagnetic analysis and steady-state thermal analysis are performed. This paper describes design considerations of the scanning system and mainly analyses the eddy current effect of the scanning magnets. Different coil shapes and slit arrangements are simulated and compared to obtain the optimal configuration. The maximum temperatures of two magnets are optimized below 70 °C. In addition, the lag effect due to eddy currents is also discussed.

  13. Development of a Hybrid Atomic Force Microscopic Measurement System Combined with White Light Scanning Interferometry

    Directory of Open Access Journals (Sweden)

    Xiaotang Hu

    2011-12-01

    Full Text Available A hybrid atomic force microscopic (AFM measurement system combined with white light scanning interferometry for micro/nanometer dimensional measurement is developed. The system is based on a high precision large-range positioning platform with nanometer accuracy on which a white light scanning interferometric module and an AFM head are built. A compact AFM head is developed using a self-sensing tuning fork probe. The head need no external optical sensors to detect the deflection of the cantilever, which saves room on the head, and it can be directly fixed under an optical microscopic interferometric system. To enhance the system’s dynamic response, the frequency modulation (FM mode is adopted for the AFM head. The measuring data can be traceable through three laser interferometers in the system. The lateral scanning range can reach 25 mm × 25 mm by using a large-range positioning platform. A hybrid method combining AFM and white light scanning interferometry is proposed to improve the AFM measurement efficiency. In this method, the sample is measured firstly by white light scanning interferometry to get an overall coarse morphology, and then, further measured with higher resolution by AFM. Several measuring experiments on standard samples demonstrate the system’s good measurement performance and feasibility of the hybrid measurement method.

  14. The correction of vibration in frequency scanning interferometry based absolute distance measurement system for dynamic measurements

    Science.gov (United States)

    Lu, Cheng; Liu, Guodong; Liu, Bingguo; Chen, Fengdong; Zhuang, Zhitao; Xu, Xinke; Gan, Yu

    2015-10-01

    Absolute distance measurement systems are of significant interest in the field of metrology, which could improve the manufacturing efficiency and accuracy of large assemblies in fields such as aircraft construction, automotive engineering, and the production of modern windmill blades. Frequency scanning interferometry demonstrates noticeable advantages as an absolute distance measurement system which has a high precision and doesn't depend on a cooperative target. In this paper , the influence of inevitable vibration in the frequency scanning interferometry based absolute distance measurement system is analyzed. The distance spectrum is broadened as the existence of Doppler effect caused by vibration, which will bring in a measurement error more than 103 times bigger than the changes of optical path difference. In order to decrease the influence of vibration, the changes of the optical path difference are monitored by a frequency stabilized laser, which runs parallel to the frequency scanning interferometry. The experiment has verified the effectiveness of this method.

  15. The European Scanning System for the measurement and analysis of OPERA neutrino interactions with nuclear emulsions

    International Nuclear Information System (INIS)

    Ieva, Michela

    2010-01-01

    Nuclear emulsion films record tracks of charged particles with sub-micron accuracy. The development of fully automatized and DataBase-driven scanning system has made possible the use of nuclear emulsions in large mass detectors. The OPERA experiment, indeed, consists of a hybrid apparatus composed by electronic detectors and lead-emulsion structures (ECC) that make OPERA a large massive (1.25 kt) and high granularity detector. The European Scanning System (ESS), one of the two systems specifically developed for the needs of OPERA, is able to scan emulsions with a speed of 20cm 2 /h and with position and angular resolution of 0.1μm and 2 mrad. Thanks to these features we are able to follow back charged particles along their trajectories until the location, reconstruction and analysis of neutrino interaction vertices in a quasi-online way.

  16. The European Scanning System for the measurement and analysis of OPERA neutrino interactions with nuclear emulsions

    Science.gov (United States)

    Ieva, Michela

    2010-05-01

    Nuclear emulsion films record tracks of charged particles with sub-micron accuracy. The development of fully automatized and DataBase-driven scanning system has made possible the use of nuclear emulsions in large mass detectors. The OPERA experiment, indeed, consists of a hybrid apparatus composed by electronic detectors and lead-emulsion structures (ECC) that make OPERA a large massive (1.25 kt) and high granularity detector. The European Scanning System (ESS), one of the two systems specifically developed for the needs of OPERA, is able to scan emulsions with a speed of 20 cm2/h and with position and angular resolution of 0.1 μm and 2 mrad. Thanks to these features we are able to follow back charged particles along their trajectories until the location, reconstruction and analysis of neutrino interaction vertices in a quasi-online way.

  17. Scanning Ultrasonic Spectroscopy System Developed for the Inspection of Composite Flywheels

    Science.gov (United States)

    Martin, Richard E.; Baaklini, George Y.

    2002-01-01

    Composite flywheels are being considered as replacements for chemical batteries aboard the International Space Station. A flywheel stores energy in a spinning mass that can turn a generator to meet power demands. Because of the high rotational speeds of the spinning mass, extensive testing of the flywheel system must be performed prior to flight certification. With this goal in mind, a new scanning system has been developed at the NASA Glenn Research Center for the nondestructive inspection of composite flywheels and flywheel subcomponents. The system uses ultrasonic waves to excite a material and examines the response to detect and locate flaws and material variations. The ultrasonic spectroscopy system uses a transducer to send swept-frequency ultrasonic waves into a test material and then receives the returning signal with a second transducer. The received signal is then analyzed in the frequency domain using a fast Fourier transform. A second fast Fourier transform is performed to examine the spacing of the peaks in the frequency domain. The spacing of the peaks is related to the standing wave resonances that are present in the material because of the constructive and destructive interferences of the waves in the full material thickness as well as in individual layers within the material. Material variations and flaws are then identified by changes in the amplitudes and positions of the peaks in both the frequency and resonance spacing domains. This work, conducted under a grant through the Cleveland State University, extends the capabilities of an existing point-by-point ultrasonic spectroscopy system, thus allowing full-field automated inspection. Results of an ultrasonic spectroscopy scan of a plastic cylinder with intentionally seeded flaws. The result of an ultrasonic spectroscopy scan of a plastic cylinder used as a proof-of-concept specimen is shown. The cylinder contains a number of flat bottomed holes of various sizes and shapes. The scanning system

  18. DNA Barcoding on Bacteria: A Review

    Directory of Open Access Journals (Sweden)

    D. E. Lebonah

    2014-01-01

    Full Text Available Bacteria are omnipotent and they can be found everywhere. The study of bacterial pathogens has been happening from olden days to prevent epidemics, food spoilage, losses in agricultural production, and loss of lives. Modern techniques in DNA based species identification are considered. So, there is a need to acquire simple and quick identification technique. Hence, this review article covers the efficacy of DNA barcoding of bacteria. Routine DNA barcoding involves the production of PCR amplicons from particular regions to sequence them and these sequence data are used to identify or “barcode” that organism to make a distinction from other species.

  19. DNA BARCODING IKAN HIAS INTRODUKSI

    Directory of Open Access Journals (Sweden)

    Melta Rini Fahmi

    2017-05-01

    Full Text Available Identifikasi spesies menjadi tantangan dalam pengelolaan ikan hias introduksi baik untuk tujuan budidaya maupun konservasi. Penelitian ini bertujuan untuk melakukan identifikasi molekuler ikan hias introduksi yang beredar di pembudidaya dan pasar ikan hias Indonesia dengan menggunakan barcode DNA gen COI. Sampel ikan diperoleh dari pembudidaya dan importir ikan hias di kawasan Bandung dan Jakarta. Total DNA diekstraksi dari jaringan sirip ekor dengan menggunakan metode kolom. Amplifikasi gen target dilakukan dengan menggunakan primer FishF1, FishF2, FishR1, dan FishR2. Hasil pembacaan untai DNA disejajarkan dengan sekuen yang terdapat pada genbank melalui program BLAST. Identifikasi dilakukan melalui kekerabatan pohon filogenetik dan presentasi indeks kesamaan dengan sekuen genbank. Hasil identifikasi menunjukkan sampel yang diuji terbagi menjadi lima grup, yaitu: Synodontis terdiri atas lima spesies, Corydoras: empat spesies, Phseudoplatystoma: tiga spesies, Botia: tiga spesies, dan Leporinus: tiga spesies dengan nilai boostrap 99-100. Indeks kesamaan sekuen menunjukkan sebanyak 11 spesies memiliki indeks kesamaan 99%-100% dengan data genbank yaitu Synodontis decorus, Synodontis eupterus, Synodontis greshoffi, Botia kubotai, Botia lohachata, Rasbora erythromicron, Corydoras aeneus, Gyrinocheilus aymonieri, Eigenmannia virescens, Leporinus affinis, Phractocephalus hemioliopterus. Dua spesies teridentifikasi sebagai hasil hibridisasi (kawin silang yaitu Leopard catfish (100% identik dengan Pseudoplatystoma faciatum dan Synodontis leopard (100% identik dengan Synodontis notatus. Hasil analisis nukleotida penciri diperoleh tujuh nukleotida untuk Synodontis decora, 10 nukleotida untuk Synodontis tanganyicae, 13 nukleotida untuk Synodontis euterus, empat nukleotida untuk Synodontis notatus, dan 14 untuk Synodontis grashoffi. Kejelasan identifikasi spesies ikan menjadi kunci utama dalam budidaya, perdagangan, manajemen, konservasi, dan pengembangan

  20. Development of NIRS pencil beam scanning system for carbon ion radiotherapy

    Science.gov (United States)

    Furukawa, T.; Hara, Y.; Mizushima, K.; Saotome, N.; Tansho, R.; Saraya, Y.; Inaniwa, T.; Mori, S.; Iwata, Y.; Shirai, T.; Noda, K.

    2017-09-01

    At Heavy Ion Medical Accelerator in Chiba (HIMAC) in National Institute of Radiological Sciences (NIRS), more than 9000 patients have been successfully treated by carbon ion beams since 1994. The successful results of treatments have led us to construct a new treatment facility equipped with a three-dimensional pencil beam scanning irradiation system, which is one of sophisticated techniques for cancer therapy with high energetic ion beam. This new facility comprises two treatment rooms having fixed beam lines and one treatment room having rotating gantry line. The challenge of this project is to realize treatment of a moving target by scanning irradiation. Thus, to realize this, the development of the fast scanning system is one of the most important issues in this project. After intense commissioning and quality assurance tests, the treatment with scanned ion beam was started in May 2011. After treatment of static target starts, we have developed related technologies. As a result, we can start treatment of moving target and treatment without range shifter plates since 2015. In this paper, the developments of the scanning irradiation system are described.

  1. A new fast scanning system for the measurement of large angle tracks in nuclear emulsions

    Science.gov (United States)

    Alexandrov, A.; Buonaura, A.; Consiglio, L.; D'Ambrosio, N.; De Lellis, G.; Di Crescenzo, A.; Di Marco, N.; Galati, G.; Lauria, A.; Montesi, M. C.; Pupilli, F.; Shchedrina, T.; Tioukov, V.; Vladymyrov, M.

    2015-11-01

    Nuclear emulsions have been widely used in particle physics to identify new particles through the observation of their decays thanks to their unique spatial resolution. Nevertheless, before the advent of automatic scanning systems, the emulsion analysis was very demanding in terms of well trained manpower. Due to this reason, they were gradually replaced by electronic detectors, until the '90s, when automatic microscopes started to be developed in Japan and in Europe. Automatic scanning was essential to conceive large scale emulsion-based neutrino experiments like CHORUS, DONUT and OPERA. Standard scanning systems have been initially designed to recognize tracks within a limited angular acceptance (θ lesssim 30°) where θ is the track angle with respect to a line perpendicular to the emulsion plane. In this paper we describe the implementation of a novel fast automatic scanning system aimed at extending the track recognition to the full angular range and improving the present scanning speed. Indeed, nuclear emulsions do not have any intrinsic limit to detect particle direction. Such improvement opens new perspectives to use nuclear emulsions in several fields in addition to large scale neutrino experiments, like muon radiography, medical applications and dark matter directional detection.

  2. EpiScanGIS: an online geographic surveillance system for meningococcal disease

    Directory of Open Access Journals (Sweden)

    Albert Jürgen

    2008-07-01

    Full Text Available Abstract Background Surveillance of infectious diseases increasingly relies on Geographic Information Systems (GIS. The integration of pathogen fine typing data in dynamic systems and visualization of spatio-temporal clusters are a technical challenge for system development. Results An online geographic information system (EpiScanGIS based on open source components has been launched in Germany in May 2006 for real time provision of meningococcal typing data in conjunction with demographic information (age, incidence, population density. Spatio-temporal clusters of disease detected by computer assisted cluster analysis (SaTScan™ are visualized on maps. EpiScanGIS enables dynamic generation of animated maps. The system is based on open source components; its architecture is open for other infectious agents and geographic regions. EpiScanGIS is available at http://www.episcangis.org, and currently has 80 registered users, mostly from the public health service in Germany. At present more than 2,900 cases of invasive meningococcal disease are stored in the database (data as of June 3, 2008. Conclusion EpiScanGIS exemplifies GIS applications and early-warning systems in laboratory surveillance of infectious diseases.

  3. INITIAL TESTS AND ACCURACY ASSESMENT OF A COMPACT MOBILE LASER SCANNING SYSTEM

    Directory of Open Access Journals (Sweden)

    K. Julge

    2016-06-01

    Full Text Available Mobile laser scanning (MLS is a faster and cost-effective alternative to static laser scanning, even though there is a slight trade-off in accuracy. This contribution describes a compact mobile laser scanning system mounted on a vehicle. The technical parameters of the used system components, i.e. a small LIDAR sensor Velodyne VLP-16 and a dual antenna GNSS/INS system Advanced Navigation Spatial Dual, are reviewed, along with the integration of these components for spatial data acquisition. Calculation principles of 3D coordinates from the real-time data of all the involved sensors are discussed. The field tests were carried out in a controlled environment of a parking lot and at different velocities. Experiments were carried out to test the ability of the GNSS/INS system to cope with difficult conditions, e.g. sudden movements due to cornering or swerving. The accuracy of the resulting MLS point cloud is evaluated with respect to high-accuracy static terrestrial laser scanning data. Problems regarding combining LIDAR, GNSS and INS sensors are outlined, as well as the initial accuracy assessments. Initial tests revealed errors related to insufficient quality of inertial data and a need for the trajectory post-processing calculations. Although this study was carried out while the system was mounted on a car, there is potential for operating the system on an unmanned aerial vehicle, all-terrain vehicle or in a backpack mode due to its relatively compact size.

  4. Initial Tests and Accuracy Assesment of a Compact Mobile Laser Scanning System

    Science.gov (United States)

    Julge, K.; Ellmann, A.; Vajakas, T.; Kolka, R.

    2016-06-01

    Mobile laser scanning (MLS) is a faster and cost-effective alternative to static laser scanning, even though there is a slight trade-off in accuracy. This contribution describes a compact mobile laser scanning system mounted on a vehicle. The technical parameters of the used system components, i.e. a small LIDAR sensor Velodyne VLP-16 and a dual antenna GNSS/INS system Advanced Navigation Spatial Dual, are reviewed, along with the integration of these components for spatial data acquisition. Calculation principles of 3D coordinates from the real-time data of all the involved sensors are discussed. The field tests were carried out in a controlled environment of a parking lot and at different velocities. Experiments were carried out to test the ability of the GNSS/INS system to cope with difficult conditions, e.g. sudden movements due to cornering or swerving. The accuracy of the resulting MLS point cloud is evaluated with respect to high-accuracy static terrestrial laser scanning data. Problems regarding combining LIDAR, GNSS and INS sensors are outlined, as well as the initial accuracy assessments. Initial tests revealed errors related to insufficient quality of inertial data and a need for the trajectory post-processing calculations. Although this study was carried out while the system was mounted on a car, there is potential for operating the system on an unmanned aerial vehicle, all-terrain vehicle or in a backpack mode due to its relatively compact size.

  5. Fundamental analysis and algorithms for development of a mobile fast-scan lateral migration radiography system

    Science.gov (United States)

    Su, Zhong

    Lateral migration radiography (LMR) is a unique x-ray Compton backscatter imaging (CBI) technique to image surface and subsurface, or internal structure of an object. An x-ray pencil beam scans the interrogated area and the backscattered photons are registered by detectors which have varying degrees of collimation. In early LMR applications, either the LMR systems or the imaged objects are moved on a rectangular grid, and at each node, the systems register backscattered photon energy deposition as pixel intensity in acquired images. The mechanical movement of the system or objects from pixel to pixel causes prolonged image scan time with a high percentage of system dead time. To avoid this drawback, a particular x-ray beam formation technique is proposed and analyzed. A corresponding mobile, fast-scan LMR system is designed, fabricated and tested. The results show a two orders-of-magnitude reduction in image scan time compared with those of previous systems. The x-ray beam formation technique, based on a rotating collimator in the LMR system, implements surface line scan by sampling an x-ray fan beam. This rotating collimator yields unique imaging effects compared to those for an x-ray beam with fixed collimation and perpendicular incidence: (1) the speed of the x-ray beam spot on the scanned surface is not uniform; (2) constant movement of the x-ray beam spot changes the resolution in the image raster direction; (3) x-ray beam spot size changes with location on the scanned surface; (4) the object image shows a squeezed effect in the raster scan direction; (5) under a uniform background, the Compton scatter angular distribution causes the x-ray backscatter field to be stronger, when the x-ray beam has greater incidence angle; and (6) the x-ray illumination spot trace on the scanned surface is skewed. The physics generating these effects is analyzed with Monte Carlo computer simulations and/or measurements. Image acquisition and image processing algorithms are

  6. Singapore Cancer Network (SCAN) Guidelines for Systemic Therapy of Pancreatic Adenocarcinoma.

    Science.gov (United States)

    2015-10-01

    The SCAN pancreatic cancer workgroup aimed to develop Singapore Cancer Network (SCAN) clinical practice guidelines for systemic therapy for pancreatic adenocarcinoma in Singapore. The workgroup utilised a modified ADAPTE process to calibrate high quality international evidence-based clinical practice guidelines to our local setting. Five international guidelines were evaluated- those developed by the National Cancer Comprehensive Network (2014), the European Society of Medical Oncology (2012), Cancer Care Ontario (2013), the Japan Pancreas Society (2013) and the British Society of Gastroenterology, Pancreatic Society of Great Britain and Ireland, and the Association of Upper Gastrointestinal Surgeons of Great Britain and Ireland (2005). Recommendations on the management of resected, borderline resectable, locally advanced and metastatic pancreatic adenocarcinoma were developed. These adapted guidelines form the SCAN Guidelines for systemic therapy for pancreatic adenocarcinoma in Singapore.

  7. Influence of scanning system and dentist's level of training in the accuracy of digital impressions

    Science.gov (United States)

    Hategan, Simona; Gabor, Alin; Zaharia, Cristian; Sinescu, Cosmin; Negrutiu, Meda Lavinia; Jivanescu, Anca

    2016-03-01

    Background: The principal aim of our study was to evaluate digital impressions, taken with spray powder and powderfree scan systems, in order to determine the influence of the dentist's commitment to training as a critical factor regarding quality. Material and method: Two digital intraoral impression systems from the same manufacture (Sirona) : Apollo DI and CEREC Omnicam, were used to scan 16 crown preparations on teeth on a typodont maxillary model. Because an Apollo Di intraoral camera is a powder system, an adhesive was applied before using the powder spray. Three groups were used to scan the crown preparations in order to determine coating thickness homogeneity. One group consisted of senior year dental students, a second consisted of prosthodontics residents, and the third consisted of prosthodontics specialists. The same procedure was applied with a CEREC Omnicam intraoral camera, which is a powder-free system. By using the two systems software parameters we were able to determine the scanning precision. Results: Homogeneity scores for Apollo Di regarding the spray layer was significantly thinner for all dental surfaces in the first group, while the second group had thinner coatings for buccal and distal surfaces. For the third group, the crown preparations were coated more homogeneously than the first two groups. The powder-free system CEREC Omnicam can, to a degree, mask the lack of experience in direct optical impressions by avoiding the poor quality coating, which can lead to defective marginal adaptation of definitive restoration. Conclusions: The dentist's lack of experience can be mitigated, and partially avoided, by using powder-free systems. At the same time, the dentist can give more time towards learning how to integrate computerized fabricated restoration into the practice. The commitment to training is a critical factor in the successful integration of the technology. In addition, scanning marginal preparation details needs time in order to

  8. Hi-Res scan mode in clinical MDCT systems: Experimental assessment of spatial resolution performance.

    Science.gov (United States)

    Cruz-Bastida, Juan P; Gomez-Cardona, Daniel; Li, Ke; Sun, Heyi; Hsieh, Jiang; Szczykutowicz, Timothy P; Chen, Guang-Hong

    2016-05-01

    The introduction of a High-Resolution (Hi-Res) scan mode and another associated option that combines Hi-Res mode with the so-called High Definition (HD) reconstruction kernels (referred to as a Hi-Res/HD mode in this paper) in some multi-detector CT (MDCT) systems offers new opportunities to increase spatial resolution for some clinical applications that demand high spatial resolution. The purpose of this work was to quantify the in-plane spatial resolution along both the radial direction and tangential direction for the Hi-Res and Hi-Res/HD scan modes at different off-center positions. A technique was introduced and validated to address the signal saturation problem encountered in the attempt to quantify spatial resolution for the Hi-Res and Hi-Res/HD scan modes. Using the proposed method, the modulation transfer functions (MTFs) of a 64-slice MDCT system (Discovery CT750 HD, GE Healthcare) equipped with both Hi-Res and Hi-Res/HD modes were measured using a metal bead at nine different off-centered positions (0-16 cm with a step size of 2 cm); at each position, both conventional scans and Hi-Res scans were performed. For each type of scan and position, 80 repeated acquisitions were performed to reduce noise induced uncertainties in the MTF measurements. A total of 15 reconstruction kernels, including eight conventional kernels and seven HD kernels, were used to reconstruct CT images of the bead. An ex vivo animal study consisting of a bone fracture model was performed to corroborate the MTF results, as the detection of this high-contrast and high frequency task is predominantly determined by spatial resolution. Images of this animal model generated by different scan modes and reconstruction kernels were qualitatively compared with the MTF results. At the centered position, the use of Hi-Res mode resulted in a slight improvement in the MTF; each HD kernel generated higher spatial resolution than its counterpart conventional kernel. However, the MTF along the

  9. Coupling Retinal Scanning Displays to the Human Visual System: Visual System Response and Engineering Considerations

    National Research Council Canada - National Science Library

    Turner, Stuart

    2002-01-01

    A retinal scanning display (RSD) is a visual display that presents an image to an observer via a modulated beam of light that is directed through the eye's pupil and rapidly scanned in a raster-like pattern across the retina...

  10. DNA barcoding the Lepidoptera inventory of a large complex tropical conserved wildland, Area de Conservacion Guanacaste, northwestern Costa Rica.

    Science.gov (United States)

    Janzen, Daniel H; Hallwachs, Winnie

    2016-09-01

    The 37-year ongoing inventory of the estimated 15 000 species of Lepidoptera living in the 125 000 terrestrial hectares of Area de Conservacion Guanacaste, northwestern Costa Rica, has DNA barcode documented 11 000+ species, and the simultaneous inventory of at least 6000+ species of wild-caught caterpillars, plus 2700+ species of parasitoids. The inventory began with Victorian methodologies and species-level perceptions, but it was transformed in 2004 by the full application of DNA barcoding for specimen identification and species discovery. This tropical inventory of an extraordinarily species-rich and complex multidimensional trophic web has relied upon the sequencing services provided by the Canadian Centre for DNA Barcoding, and the informatics support from BOLD, the Barcode of Life Data Systems, major tools developed by the Centre for Biodiversity Genomics at the Biodiversity Institute of Ontario, and available to all through couriers and the internet. As biodiversity information flows from these many thousands of undescribed and often look-alike species through their transformations to usable product, we see that DNA barcoding, firmly married to our centuries-old morphology-, ecology-, microgeography-, and behavior-based ways of taxonomizing the wild world, has made possible what was impossible before 2004. We can now work with all the species that we find, as recognizable species-level units of biology. In this essay, we touch on some of the details of the mechanics of actually using DNA barcoding in an inventory.

  11. DNA barcode authentication of wood samples of threatened and commercial timber trees within the tropical dry evergreen forest of India.

    Science.gov (United States)

    Nithaniyal, Stalin; Newmaster, Steven G; Ragupathy, Subramanyam; Krishnamoorthy, Devanathan; Vassou, Sophie Lorraine; Parani, Madasamy

    2014-01-01

    India is rich with biodiversity, which includes a large number of endemic, rare and threatened plant species. Previous studies have used DNA barcoding to inventory species for applications in biodiversity monitoring, conservation impact assessment, monitoring of illegal trading, authentication of traded medicinal plants etc. This is the first tropical dry evergreen forest (TDEF) barcode study in the World and the first attempt to assemble a reference barcode library for the trees of India as part of a larger project initiated by this research group. We sampled 429 trees representing 143 tropical dry evergreen forest (TDEF) species, which included 16 threatened species. DNA barcoding was completed using rbcL and matK markers. The tiered approach (1st tier rbcL; 2nd tier matK) correctly identified 136 out of 143 species (95%). This high level of species resolution was largely due to the fact that the tree species were taxonomically diverse in the TDEF. Ability to resolve taxonomically diverse tree species of TDEF was comparable among the best match method, the phylogenetic method, and the characteristic attribute organization system method. We demonstrated the utility of the TDEF reference barcode library to authenticate wood samples from timber operations in the TDEF. This pilot research study will enable more comprehensive surveys of the illegal timber trade of threatened species in the TDEF. This TDEF reference barcode library also contains trees that have medicinal properties, which could be used to monitor unsustainable and indiscriminate collection of plants from the wild for their medicinal value.

  12. A LabVIEWTM-based scanning and control system for proton beam micromachining

    International Nuclear Information System (INIS)

    Bettiol, Andrew A.; Kan, J.A. van; Sum, T.C.; Watt, F.

    2001-01-01

    LabVIEW TM is steadily gaining in popularity as the programming language of choice for scientific data acquisition and control. This is due to the vast array of measurement instruments and data acquisition cards supported by the LabVIEW TM environment, and the relative ease with which advanced software can be programmed. Furthermore, virtual instruments that are designed for a given system can be easily ported to other LabVIEW TM platforms and hardware. This paper describes the new LabVIEW TM based scanning and control system developed specifically for proton beam micromachining (PBM) applications. The new system is capable of scanning figures at 16-bit resolution with improved sub-microsecond scan rates. Support for electrostatic beam blanking and external dose normalization using a TTL signal have been implemented. The new software incorporates a semi-automated dose calibration system, and a number of novel dose normalization methods. Limitations of the current beam scanning hardware are discussed in light of new results obtained from micromachining experiments performed in SU-8 photoresist

  13. Dialog programs for guidance of scanning-measuring device operators in the COSDES system

    International Nuclear Information System (INIS)

    Ivanova, N.S.

    1983-01-01

    The paper describes concepts and general characteristics of dialogue programs intended for guidance of scanning-measuring device operators. The programs are written as components of COSDES software system and developed on the DEC-10 computer. COSDES is the software for processing data from large bubble chambers. Programs structure and functions, dialogue organization as well as used data structures are considered

  14. Biological sample evaluation using a line-scan based SWIR hyperspectral imaging system

    Science.gov (United States)

    A new line-scan hyperspectral imaging system was developed to enable short wavelength infrared (SWIR) imagery for biological sample evaluation. Critical sensing components include a SWIR imaging spectrograph and an HgCdTe (MCT) focal plane array detector. To date, agricultural applications of infra...

  15. Development of automated nuclear emulsion scanning system 'S-UTS' and its application

    International Nuclear Information System (INIS)

    Morishima, Kunihiro; Nakano, Toshiyuki

    2011-01-01

    We have developed ultra high speed automated nuclear emulsion scanning system 'S-UTS' for the OPERA experiment. In this paper, we present the essence of its mechanism and performance, recent result of the OPERA experiment and its application to particle radiography by using nuclear emulsion. (author)

  16. Automatic Gamma-Scanning System for Measurement of Residual Heat in Spent Nuclear Fuel

    International Nuclear Information System (INIS)

    Osifo, Otasowie

    2007-03-01

    In Sweden, spent nuclear fuel will be encapsulated and placed in a deep geological repository. In this procedure, reliable and accurate spent fuel data such as discharge burnup, cooling time and residual heat must be available. The gamma scanning method was proposed in earlier work as a fast and reliable method for the experimental determination of such spent fuel data. This thesis is focused on the recent achievements in the development of a pilot gamma scanning system and its application in measuring spent fuel residual heat. The achievements include the development of dedicated spectroscopic data-acquisition and analysis software and the use of a specially designed calorimeter for calibrating the gamma scanning system. The pilot system is described, including an evaluation of the performance of the spectrum analysis software. Also described are the gamma-scanning measurements on 31 spent PWR fuel assemblies performed using the pilot system. The results obtained for the determination of residual heat are presented, showing an agreement of (2-3) % with both calorimetric and calculated data. In addition, the ability to verify declared data such as discharge burnup and cooling time is demonstrated

  17. An improved three-dimensional non-scanning laser imaging system based on digital micromirror device

    Science.gov (United States)

    Xia, Wenze; Han, Shaokun; Lei, Jieyu; Zhai, Yu; Timofeev, Alexander N.

    2018-01-01

    Nowadays, there are two main methods to realize three-dimensional non-scanning laser imaging detection, which are detection method based on APD and detection method based on Streak Tube. However, the detection method based on APD possesses some disadvantages, such as small number of pixels, big pixel interval and complex supporting circuit. The detection method based on Streak Tube possesses some disadvantages, such as big volume, bad reliability and high cost. In order to resolve the above questions, this paper proposes an improved three-dimensional non-scanning laser imaging system based on Digital Micromirror Device. In this imaging system, accurate control of laser beams and compact design of imaging structure are realized by several quarter-wave plates and a polarizing beam splitter. The remapping fiber optics is used to sample the image plane of receiving optical lens, and transform the image into line light resource, which can realize the non-scanning imaging principle. The Digital Micromirror Device is used to convert laser pulses from temporal domain to spatial domain. The CCD with strong sensitivity is used to detect the final reflected laser pulses. In this paper, we also use an algorithm which is used to simulate this improved laser imaging system. In the last, the simulated imaging experiment demonstrates that this improved laser imaging system can realize three-dimensional non-scanning laser imaging detection.

  18. A vision-based system for fast and accurate laser scanning in robot-assisted phonomicrosurgery.

    Science.gov (United States)

    Dagnino, Giulio; Mattos, Leonardo S; Caldwell, Darwin G

    2015-02-01

    Surgical quality in phonomicrosurgery can be improved by open-loop laser control (e.g., high-speed scanning capabilities) with a robust and accurate closed-loop visual servoing systems. A new vision-based system for laser scanning control during robot-assisted phonomicrosurgery was developed and tested. Laser scanning was accomplished with a dual control strategy, which adds a vision-based trajectory correction phase to a fast open-loop laser controller. The system is designed to eliminate open-loop aiming errors caused by system calibration limitations and by the unpredictable topology of real targets. Evaluation of the new system was performed using CO(2) laser cutting trials on artificial targets and ex-vivo tissue. This system produced accuracy values corresponding to pixel resolution even when smoke created by the laser-target interaction clutters the camera view. In realistic test scenarios, trajectory following RMS errors were reduced by almost 80 % with respect to open-loop system performances, reaching mean error values around 30 μ m and maximum observed errors in the order of 60 μ m. A new vision-based laser microsurgical control system was shown to be effective and promising with significant positive potential impact on the safety and quality of laser microsurgeries.

  19. A multi-locus approach to barcoding in the Anopheles strodei subgroup (Diptera: Culicidae).

    Science.gov (United States)

    Bourke, Brian Patrick; Oliveira, Tatiane Porangaba; Suesdek, Lincoln; Bergo, Eduardo Sterlino; Sallum, Maria Anice Mureb

    2013-04-19

    The ability to successfully identify and incriminate pathogen vectors is fundamental to effective pathogen control and management. This task is confounded by the existence of cryptic species complexes. Molecular markers can offer a highly effective means of species identification in such complexes and are routinely employed in the study of medical entomology. Here we evaluate a multi-locus system for the identification of potential malaria vectors in the Anopheles strodei subgroup. Larvae, pupae and adult mosquitoes (n = 61) from the An. strodei subgroup were collected from 21 localities in nine Brazilian states and sequenced for the COI, ITS2 and white gene. A Bayesian phylogenetic approach was used to describe the relationships in the Strodei Subgroup and the utility of COI and ITS2 barcodes was assessed using the neighbor joining tree and "best close match" approaches. Bayesian phylogenetic analysis of the COI, ITS2 and white gene found support for seven clades in the An. strodei subgroup. The COI and ITS2 barcodes were individually unsuccessful at resolving and identifying some species in the Subgroup. The COI barcode failed to resolve An. albertoi and An. strodei but successfully identified approximately 92% of all species queries, while the ITS2 barcode failed to resolve An. arthuri and successfully identified approximately 60% of all species queries. A multi-locus COI-ITS2 barcode, however, resolved all species in a neighbor joining tree and successfully identified all species queries using the "best close match" approach. Our study corroborates the existence of An. albertoi, An. CP Form and An. strodei in the An. strodei subgroup and identifies four species under An. arthuri informally named A-D herein. The use of a multi-locus barcode is proposed for species identification, which has potentially important utility for vector incrimination. Individuals previously found naturally infected with Plasmodium vivax in the southern Amazon basin and reported as An

  20. Universal COI primers for DNA barcoding amphibians.

    Science.gov (United States)

    Che, Jing; Chen, Hong-Man; Yang, Jun-Xiao; Jin, Jie-Qiong; Jiang, Ke; Yuan, Zhi-Yong; Murphy, Robert W; Zhang, Ya-Ping

    2012-03-01

    DNA barcoding is a proven tool for the rapid and unambiguous identification of species, which is essential for many activities including the vouchering tissue samples in the genome 10K initiative, genealogical reconstructions, forensics and biodiversity surveys, among many other applications. A large-scale effort is underway to barcode all amphibian species using the universally sequenced DNA region, a partial fragment of mitochondrial cytochrome oxidase subunit I COI. This fragment is desirable because it appears to be superior to 16S for barcoding, at least for some groups of salamanders. The barcoding of amphibians is essential in part because many species are now endangered. Unfortunately, existing primers for COI often fail to achieve this goal. Herein, we report two new pairs of primers (➀, ➁) that in combination serve to universally amplify and sequence all three orders of Chinese amphibians as represented by 36 genera. This taxonomic diversity, which includes caecilians, salamanders and frogs, suggests that the new primer pairs will universally amplify COI for the vast majority species of amphibians. © 2011 Blackwell Publishing Ltd.

  1. DNA Barcoding of Philippine Herbal Medicinal Products.

    Science.gov (United States)

    Pedales, Ronniel D; Damatac, Amor M; Limbo, Carlo A; Marquez, Cielo Mae D; Navarro, Anna Isabel B; Molina, Jeanmaire

    2016-11-01

    The Philippine government established the Traditional and Alternative Medicine Act in 1997 to promote traditionally used herbal products and to provide an effective yet affordable alternative to conventional medicines. However, government regulation of herbal medicinal products (HMPs) is not stringent, relying only on submitted quality data from the manufacturer. In this study we validated the taxonomic identity of 26 plant samples contained within 22 HMPs, each produced by different local manufacturers, through DNA barcoding of the nuclear internal transcribed spacer-2 (ITS2) region. We recovered 19 ITS2 barcodes from 26 samples. These were compared to sequences in GenBank using MEGABLAST, but ambiguous results (similar max scores for different species) were phylogenetically analyzed. Twelve of the 19 samples matched the indicated species on the product label, three were equivocal in specific identity but were placed in the expected genus, and four other samples from three manufacturers contained contamination and/or substitution. GenBank's reference database was at times problematic because some sequences were lacking or were misidentified, but the database was still useful. Overall, ITS2 barcoding was successful in authenticating the HMPs, and it is recommended during the premarket evaluation process so as to obtain a certificate of registration from the government. The government should also develop a comprehensive database of barcodes for Philippine plants, and should prioritize the development of the traditional pharmacopeia because many locally produced HMPs are not indigenous.

  2. DNA barcoding in Mexico: an introduction.

    Science.gov (United States)

    Elías-Gutiérrez, M; León-Regagnon, V

    2013-11-01

    DNA barcoding has become an important current scientific trend to the understanding of the world biodiversity. In the case of mega-diverse hot spots like Mexico, this technique represents an important tool for taxonomists, allowing them to concentrate in highlighted species by the barcodes instead of analyzing entire sets of specimens. This tendency resulted in the creation of a national network named Mexican Barcode of Life (MEXBOL) which main goals are to train students, and to promote the interaction and collective work among researchers interested in this topic. As a result, the number of records in the Barcode of Life Database (BOLD) for some groups, such as the Mammalia, Actinopterygii, Polychaeta, Branchiopoda, Ostracoda, Maxillopoda, Nematoda, Pinophyta, Ascomycota and Basidiomycota place Mexico among the top ten countries in the generation of these data. This special number presents only few of the many interesting findings in this region of the world, after the use of this technique and its integration with other methodologies. © 2013 John Wiley & Sons Ltd.

  3. Scanning, non-contact, hybrid broadband diffuse optical spectroscopy and diffuse correlation spectroscopy system

    OpenAIRE

    Johansson, Johannes D.; Mireles, Miguel; Morales-Dalmau, Jordi; Farzam, Parisa; Martínez-Lozano, Mar; Casanovas, Oriol; Durduran, Turgut

    2016-01-01

    A scanning system for small animal imaging using non-contact, hybrid broadband diffuse optical spectroscopy (ncDOS) and diffuse correlation spectroscopy (ncDCS) is presented. The ncDOS uses a two-dimensional spectrophotometer retrieving broadband (610-900 nm) spectral information from up to fifty-seven source-detector distances between 2 and 5 mm. The ncDCS data is simultaneously acquired from four source-detector pairs. The sample is scanned in two dimensions while tracking variations in hei...

  4. A versatile fluorescence lifetime imaging system for scanning large areas with high time and spatial resolution

    Science.gov (United States)

    Bernardo, César; Belsley, Michael; de Matos Gomes, Etelvina; Gonçalves, Hugo; Isakov, Dmitry; Liebold, Falk; Pereira, Eduardo; Pires, Vladimiro; Samantilleke, Anura; Vasilevskiy, Mikhail; Schellenberg, Peter

    2014-08-01

    We present a flexible fluorescence lifetime imaging device which can be employed to scan large sample areas with a spatial resolution adjustable from many micrometers down to sub-micrometers and a temporal resolution of 20 picoseconds. Several different applications of the system will be presented including protein microarrays analysis, the scanning of historical samples, evaluation of solar cell surfaces and nanocrystalline organic crystals embedded in electrospun polymeric nanofibers. Energy transfer processes within semiconductor quantum dot superstructures as well as between dye probes and graphene layers were also investigated.

  5. An Asiatic Chironomid in Brazil: morphology, DNA barcode and bionomics

    Directory of Open Access Journals (Sweden)

    Gizelle Amora

    2015-07-01

    Full Text Available In most freshwater ecosystems, aquatic insects are dominant in terms of diversity; however, there is a disproportionately low number of records of alien species when compared to other freshwater organisms. The Chironomidae is one aquatic insect family that includes some examples of alien species around the world. During a study on aquatic insects in Amazonas state (Brazil, we collected specimens of Chironomidae that are similar, at the morphological level, to Chironomus kiiensis Tokunaga and Chironomus striatipennis Kieffer, both with distributions restricted to Asia. The objectives of this study were to provide morphological information on this Chironomus population, to investigate its identity using DNA barcoding and, to provide bionomic information about this species. Chironomus DNA barcode data were obtained from GenBank and Barcode of Life Data Systems (BOLD and, together with our data, were analyzed using the neighbor-joining method with 1000 bootstrap replicates and the genetic distances were estimated using the Kimura-2-parameter. At the morphological level, the Brazilian population cannot be distinguished either from C. striatipennis or C. kiiensis, configuring a species complex but, at the molecular level our studied population is placed in a clade together with C. striatipennis, from South Korea. Bionomic characteristics of the Brazilian Chironomus population differ from the ones of C. kiiensis from Japan, the only species in this species complex with bionomic information available. The Brazilian Chironomus population has a smaller size, the double of the number of eggs and inhabits oligotrophic water, in artificial container. In the molecular analysis, populations of C. striatipennis and C. kiiensis are placed in a clade, formed by two groups: Group A (which includes populations from both named species, from different Asiatic regions and our Brazilian population and Group B (with populations of C. kiiensis from Japan and South Korea

  6. Design and development of Pc-based TOFD ultrasonic scanning system for welds inspection

    International Nuclear Information System (INIS)

    Suhairy Sani; Mohamad Pauzi Ismai; Muhammad Faiz Mohd Shukri; Amry Amin Abas

    2010-01-01

    This paper describes the design and development of a portable PC-based ultrasonic scanning system for industrial applications. The system which is called TOFD Ultrasonic Scanning System (TOFUSS) is used to create a gray scale imaging techniques are applied to the RF (AC) signal phase and enables weld integrity to be observed in real time. TOFD consists of a separate ultrasonic transmitter and receiver. The Probes are aimed at the same point in the weld volume. The entire weld is flooded with ultrasound allowing inspection of the weld. With a time of flight path, the ultrasonic velocity and the spatial relationship of the two probes, location and height of the defects can be very accurately calculated. The algorithm and complete system were implemented in a computer software developed using Microsoft Visual BASIC 6.0. (author)

  7. Thermal IR imaging system using a self-scanned HgCdTe/CCD detector array

    Science.gov (United States)

    Husain-Abidi, A. S.; Ostrow, H.; Rubin, B.

    1980-01-01

    It is likely that future high resolution earth observation imaging systems will utilize self-scanned IR detectors. In an initial step toward this goal, an IR imaging system operating in the 10 to 12 micron spectral region has been developed. This system uses a 9-element HgCdTe/CCD linear array operating in the photoconductive mode, nine pre-amplifiers and a silicon CCD multiplexer integrated into a focal plane assembly. Opto-mechanical techniques are used to scan the scene and images are produced in real time. The imaging performance of this system is described and measurements of noise, responsivity, specific detectivity, and detector sensitivity profiles are presented. The requirements for more advanced detector arrays for use in future NASA remote sensing missions are also discussed.

  8. A non-contact time-domain scanning brain imaging system: first in-vivo results

    Science.gov (United States)

    Mazurenka, M.; Di Sieno, L.; Boso, G.; Contini, D.; Pifferi, A.; Dalla Mora, A.; Tosi, A.; Wabnitz, H.; Macdonald, R.

    2013-06-01

    We present results of first in-vivo tests of an optical non-contact scanning imaging system, intended to study oxidative metabolism related processes in biological tissue by means of time-resolved near-infrared spectroscopy. Our method is a novel realization of the short source-detector separation approach and based on a fast-gated single-photon avalanche diode to detect late photons only. The scanning system is built in quasi-confocal configuration and utilizes polarizationsensitive detection. It scans an area of 4×4 cm2, recording images with 32×32 pixels, thus creating a high density of source-detector pairs. To test the system we performed a range of in vivo measurements of hemodynamic changes in several types of biological tissues, i.e. skin (Valsalva maneuver), muscle (venous and arterial occlusions) and brain (motor and cognitive tasks). Task-related changes in hemoglobin concentrations were clearly detected in skin and muscle. The brain activation shows weaker, but yet detectable changes. These changes were localized in pixels near the motor cortex area (C3). However, it was found that even very short hair substantially impairs the measurement. Thus the applicability of the scanner is limited to hairless parts of body. The results of our first in-vivo tests prove the feasibility of non-contact scanning imaging as a first step towards development of a prototype for biological tissue imaging for various medical applications.

  9. Design and application of the MARK IV scanning system for radionuclide computed tomography of the brain

    International Nuclear Information System (INIS)

    Kuhl, D.E.; Hoffman, E.J.; Phelps, M.E.; Ricci, A.; Reivich, M.

    1976-01-01

    The MARK IV radioisotope scanning system was built to provide fast and accurate radionuclide computed tomography (RCT). It is designed primarily for detecting commonly available radioactive labels such as /sup 99m/Tc, but it is also adapted to detecting positron emitters such as 18 F. The system has interlaced convergent collimation in a 4-sided arrangement of 32-independent detectors which continuously rotate as a unit, detecting, processing, and displaying the reconstructed data while the study progresses

  10. The data processing of the core sample γ spectrum scan system

    International Nuclear Information System (INIS)

    Wang Ruiping; Jue Xiaodong; Li Zhaocheng; Huang Longji

    1996-01-01

    The core sample γ spectrum scan system (CGRS) is a device to probe the natural radio-elements in large scale core in lab. This paper describes the research and methods of data processing in the system. It includes the inverse matrix, the least square (L.S.) and the weight least square (W.L.S.) tripping γ spectrum methods and gives the results. The virtues and defects of various methods are compared . Besides, it gives the total data outputs in CGRS

  11. Scanning tunneling spectroscopy on heavy-fermion systems; Rastertunnelspektroskopie an Schwere-Fermionen-Systemen

    Energy Technology Data Exchange (ETDEWEB)

    Ernst, Stefan

    2011-06-24

    in the framework of this thesis different heavy-fermion systems were studied by means of scanning tunneling microscopy and spectroscopy. In the experiment two main topics existed. On the one hand the heavy-fermion superconductivity in the compounds CeCu{sub 2}Si{sub 2}, CeCoIn{sub 5}, and on the other hand the Kondo effect in the Kondo-lattice system YbRh{sub 2}Si{sub 2}.

  12. Towards a global barcode library for Lymantria (Lepidoptera: Lymantriinae) tussock moths of biosecurity concern

    Science.gov (United States)

    Jeremy R. deWaard; Andrew Mitchell; Melody A. Keena; David Gopurenko; Laura M. Boykin; Karen F. Armstrong; Michael G. Pogue; Joao Lima; Robin Floyd; Robert H. Hanner; Leland M. Humble

    2010-01-01

    This study demonstrates the efficacy of DNA barcodes for diagnosing species of Lymantria and reinforces the view that the approach is an under-utilized resource with substantial potential for biosecurity and surveillance. Biomonitoring agencies currently employing the NB restriction digest system would gather more information by transitioning to the...

  13. Sound Synthesis and Bar-Code Technology to Develop Learning Environments for Blind Children.

    Science.gov (United States)

    Burger, D.; And Others

    1990-01-01

    An interactive, computerized sound machine was designed, incorporating bar-code technology in the user interface. The system was used in a classroom of nine blind elementary level children to teach sound awareness, logic, metalinguistics, and technological literacy and was found to have pedagogical relevance. (Author/JDD)

  14. Low-cost compact MEMS scanning ladar system for robotic applications

    Science.gov (United States)

    Moss, Robert; Yuan, Ping; Bai, Xiaogang; Quesada, Emilio; Sudharsanan, Rengarajan; Stann, Barry L.; Dammann, John F.; Giza, Mark M.; Lawler, William B.

    2012-06-01

    Future robots and autonomous vehicles require compact low-cost Laser Detection and Ranging (LADAR) systems for autonomous navigation. Army Research Laboratory (ARL) had recently demonstrated a brass-board short-range eye-safe MEMS scanning LADAR system for robotic applications. Boeing Spectrolab is doing a tech-transfer (CRADA) of this system and has built a compact MEMS scanning LADAR system with additional improvements in receiver sensitivity, laser system, and data processing system. Improved system sensitivity, low-cost, miniaturization, and low power consumption are the main goals for the commercialization of this LADAR system. The receiver sensitivity has been improved by 2x using large-area InGaAs PIN detectors with low-noise amplifiers. The FPGA code has been updated to extend the range to 50 meters and detect up to 3 targets per pixel. Range accuracy has been improved through the implementation of an optical T-Zero input line. A compact commercially available erbium fiber laser operating at 1550 nm wavelength is used as a transmitter, thus reducing the size of the LADAR system considerably from the ARL brassboard system. The computer interface has been consolidated to allow image data and configuration data (configuration settings and system status) to pass through a single Ethernet port. In this presentation we will discuss the system architecture and future improvements to receiver sensitivity using avalanche photodiodes.

  15. DNA Barcoding Identifies Illegal Parrot Trade.

    Science.gov (United States)

    Gonçalves, Priscila F M; Oliveira-Marques, Adriana R; Matsumoto, Tania E; Miyaki, Cristina Y

    2015-01-01

    Illegal trade threatens the survival of many wild species, and molecular forensics can shed light on various questions raised during the investigation of cases of illegal trade. Among these questions is the identity of the species involved. Here we report a case of a man who was caught in a Brazilian airport trying to travel with 58 avian eggs. He claimed they were quail eggs, but authorities suspected they were from parrots. The embryos never hatched and it was not possible to identify them based on morphology. As 29% of parrot species are endangered, the identity of the species involved was important to establish a stronger criminal case. Thus, we identified the embryos' species based on the analyses of mitochondrial DNA sequences (cytochrome c oxidase subunit I gene [COI] and 16S ribosomal DNA). Embryonic COI sequences were compared with those deposited in BOLD (The Barcode of Life Data System) while their 16S sequences were compared with GenBank sequences. Clustering analysis based on neighbor-joining was also performed using parrot COI and 16S sequences deposited in BOLD and GenBank. The results, based on both genes, indicated that 57 embryos were parrots (Alipiopsitta xanthops, Ara ararauna, and the [Amazona aestiva/A. ochrocephala] complex), and 1 was an owl. This kind of data can help criminal investigations and to design species-specific anti-poaching strategies, and demonstrate how DNA sequence analysis in the identification of bird species is a powerful conservation tool. © The American Genetic Association 2015. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

  16. A system level boundary scan controller board for VME applications [to CERN experiments

    CERN Document Server

    Cardoso, N; Da Silva, J C

    2000-01-01

    This work is the result of a collaboration between INESC and LIP in the CMS experiment being conducted at CERN. The collaboration addresses the application of boundary scan test at system level namely the development of a VME boundary scan controller (BSC) board prototype and the corresponding software. This prototype uses the MTM bus existing in the VME64* backplane to apply the 1149.1 test vectors to a system composed of nineteen boards, called here units under test (UUTs). A top-down approach is used to describe our work. The paper begins with some insights about the experiment being conducted at CERN, proceed with system level considerations concerning our work and with some details about the BSC board. The results obtained so far and the proposed work is reviewed in the end of this contribution. (11 refs).

  17. Frequency scanning-based stability analysis method for grid-connected inverter system

    DEFF Research Database (Denmark)

    Wang, Yanbo; Wang, Xiongfei; Blaabjerg, Frede

    2017-01-01

    This paper proposes a frequency scanning-based impedance analysis for stability assessment of grid-connected inverter system, which is able to perform stability assessment without using system mathematical models and inherit the superior feature of impedance-based stability criterion with conside......This paper proposes a frequency scanning-based impedance analysis for stability assessment of grid-connected inverter system, which is able to perform stability assessment without using system mathematical models and inherit the superior feature of impedance-based stability criterion...... with consideration of the inverter nonlinearities. Small current disturbance is injected into grid-connected inverter system in a particular frequency range, and the impedance is computed according to the harmonic-frequency response using Fourier analysis, and then the stability is predicted on the basis...... of the impedance stability criterion. The stability issues of grid-connected inverters with grid-current feedback and the converter-current feedback are addressed using the proposed method. The results obtained from simulation and experiments validate the effectiveness of the method. The frequency scanning...

  18. Radiometer uncertainty equation research of 2D planar scanning PMMW imaging system

    Science.gov (United States)

    Hu, Taiyang; Xu, Jianzhong; Xiao, Zelong

    2009-07-01

    With advances in millimeter-wave technology, passive millimeter-wave (PMMW) imaging technology has received considerable concerns, and it has established itself in a wide range of military and civil practical applications, such as in the areas of remote sensing, blind landing, precision guidance and security inspection. Both the high transparency of clothing at millimeter wavelengths and the spatial resolution required to generate adequate images combine to make imaging at millimeter wavelengths a natural approach of screening people for concealed contraband detection. And at the same time, the passive operation mode does not present a safety hazard to the person who is under inspection. Based on the description to the design and engineering implementation of a W-band two-dimensional (2D) planar scanning imaging system, a series of scanning methods utilized in PMMW imaging are generally compared and analyzed, followed by a discussion on the operational principle of the mode of 2D planar scanning particularly. Furthermore, it is found that the traditional radiometer uncertainty equation, which is derived from a moving platform, does not hold under this 2D planar scanning mode due to the fact that there is no absolute connection between the scanning rates in horizontal direction and vertical direction. Consequently, an improved radiometer uncertainty equation is carried out in this paper, by means of taking the total time spent on scanning and imaging into consideration, with the purpose of solving the problem mentioned above. In addition, the related factors which affect the quality of radiometric images are further investigated under the improved radiometer uncertainty equation, and ultimately some original results are presented and analyzed to demonstrate the significance and validity of this new methodology.

  19. Evaluation of a Backpack-Mounted 3D Mobile Scanning System

    Directory of Open Access Journals (Sweden)

    Helge A. Lauterbach

    2015-10-01

    Full Text Available Recently, several backpack-mounted systems, also known as personal laser scanning systems, have been developed. They consist of laser scanners or cameras that are carried by a human operator to acquire measurements of the environment while walking. These systems were first designed to overcome the challenges of mapping indoor environments with doors and stairs. While the human operator inherently has the ability to open doors and to climb stairs, the flexible movements introduce irregularities of the trajectory to the system. To compete with other mapping systems, the accuracy of these systems has to be evaluated. In this paper, we present an extensive evaluation of our backpack mobile mapping system in indoor environments. It is shown that the system can deal with the normal human walking motion, but has problems with irregular jittering. Moreover, we demonstrate the applicability of the backpack in a suitable urban scenario.

  20. Development of a sealed source radiation detector system for gamma ray scanning of petroleum distillation columns

    International Nuclear Information System (INIS)

    Vasquez Salvador, Pablo Antonio

    2004-01-01

    Gamma Ray Scanning is an online technique to 'view' the hydraulic performance of an operating column, with no disruption to operating processes conditions (pressure and temperature), as a cost-effective solution. The principle of this methodology consists of a small suitably sealed gamma radiation source and a radiation detector experimentally positioned to the column, moving concurrently in small increments on opposite sides and the quantity of gamma transmitted. The source-detector system consists of: a sealed ''6 0 Co radioactive source in a panoramic lead radiator, a scintillator detector coupled to a ratemeter / analyzer and a mobile system. In this work, a gamma scanning sealed source-detector system for distillation columns, was developed, comparing two scintillator detectors: NaI(Tl) (commercial) and CsI(Tl) (IPEN). In order to project the system, a simulated model of a tray-type distillation column was used. The equipment developed was tested in an industrial column for water treatment (6.5 m diameter and 40 m height). The required activities of 6 ''0Co, laboratory (11.1 MBq) and industrial works (1.48 TBq) were calculated by simulation software. Both, the NaI(Tl) and the CsI(Tl) detectors showed good proprieties for gamma scanning applications, determining the position and presence or absence of trays. (author)

  1. Study of CT Scan Flooding System at High Temperature and Pressure

    Science.gov (United States)

    Chen, X. Y.

    2017-12-01

    CT scan flooding experiment can scan micro-pore in different flooding stages by the use of CT scan technology, without changing the external morphology and internal structure of the core, and observe the distribution characterization in pore medium of different flooding fluid under different pressure.thus,it can rebuilt the distribution images of oil-water distribution in different flooding stages. However,under extreme high pressure and temperature conditions,the CT scan system can not meet the requirements. Container of low density materials or thin shell can not resist high pressure,while high density materials or thick shell will cause attenuation and scattering of X-ray. The experiment uses a simple Ct scanning systems.X ray from a point light source passing trough a micro beryllium shell on High pressure stainless steal container,continuously irradiates the core holder that can continuously 360° rotate along the core axis. A rare earth intensifying screen behind the core holder emitting light when irradiated with X ray can show the core X ray section image. An optical camera record the core X ray images through a transparency high pressure glazing that placed on the High pressure stainless steal container.Thus,multiple core X ray section images can reconstruct the 3D core reconstruction after a series of data processing.The experiment shows that both the micro beryllium shell and rare earth intensifying screen can work in high temperature and high pressure environment in the stainless steal container. This way that X-ray passes through a thin layer of micro beryllium shell , not high pressure stainless steal shell,avoid the attenuation and scattering of X-ray from the container shell,while improving the high-pressure experiment requirements.

  2. Development of RFID Library Management Information System

    OpenAIRE

    Keshinro K. K1 ., Balogun W. A; Oyetola J. B3 ., Omogoye S. O4

    2016-01-01

    : RFID-based systems move beyond security to become tracking systems that combine security with more efficient tracking of materials throughout the library, including easier and faster charge and discharge, inventorying, and materials handling. This technology helps librarians reduce valuable staff time spent scanning barcodes while charging and discharging items. RFID is a combination of radio -frequency-based technology and microchip technologyThe methodology used was serial com...

  3. Development of laser-based scanning µ-ARPES system with ultimate energy and momentum resolutions.

    Science.gov (United States)

    Iwasawa, Hideaki; Schwier, Eike F; Arita, Masashi; Ino, Akihiro; Namatame, Hirofumi; Taniguchi, Masaki; Aiura, Yoshihiro; Shimada, Kenya

    2017-11-01

    We have developed a laser-based scanning angle-resolved photoemission spectroscopy system (µ-ARPES) equipped with a high precision 6-axis control system, realizing not only high-resolution photoemission spectroscopy in energy and momentum, but also spatial resolution of a µm scale. This enables our µ-ARPES system to probe fine details of intrinsic electronic states near the Fermi level such as the superconducting gaps and lifetime broadening. Copyright © 2017 The Authors. Published by Elsevier B.V. All rights reserved.

  4. Compact Multipurpose Mobile Laser Scanning System — Initial Tests and Results

    Directory of Open Access Journals (Sweden)

    Craig Glennie

    2013-01-01

    Full Text Available We describe a prototype compact mobile laser scanning system that may be operated from a backpack or unmanned aerial vehicle. The system is small, self-contained, relatively inexpensive, and easy to deploy. A description of system components is presented, along with the initial calibration of the multi-sensor platform. The first field tests of the system, both in backpack mode and mounted on a helium balloon for real-world applications are presented. For both field tests, the acquired kinematic LiDAR data are compared with highly accurate static terrestrial laser scanning point clouds. These initial results show that the vertical accuracy of the point cloud for the prototype system is approximately 4 cm (1σ in balloon mode, and 3 cm (1σ in backpack mode while horizontal accuracy was approximately 17 cm (1σ for the balloon tests. Results from selected study areas on the Sacramento River Delta and San Andreas Fault in California demonstrate system performance, deployment agility and flexibility, and potential for operational production of high density and highly accurate point cloud data. Cost and production rate trade-offs place this system in the niche between existing airborne and tripod mounted LiDAR systems.

  5. The Application of DNA Barcodes for the Identification of Marine Crustaceans from the North Sea and Adjacent Regions.

    Directory of Open Access Journals (Sweden)

    Michael J Raupach

    Full Text Available During the last years DNA barcoding has become a popular method of choice for molecular specimen identification. Here we present a comprehensive DNA barcode library of various crustacean taxa found in the North Sea, one of the most extensively studied marine regions of the world. Our data set includes 1,332 barcodes covering 205 species, including taxa of the Amphipoda, Copepoda, Decapoda, Isopoda, Thecostraca, and others. This dataset represents the most extensive DNA barcode library of the Crustacea in terms of species number to date. By using the Barcode of Life Data Systems (BOLD, unique BINs were identified for 198 (96.6% of the analyzed species. Six species were characterized by two BINs (2.9%, and three BINs were found for the amphipod species Gammarus salinus Spooner, 1947 (0.4%. Intraspecific distances with values higher than 2.2% were revealed for 13 species (6.3%. Exceptionally high distances of up to 14.87% between two distinct but monophyletic clusters were found for the parasitic copepod Caligus elongatus Nordmann, 1832, supporting the results of previous studies that indicated the existence of an overlooked sea louse species. In contrast to these high distances, haplotype-sharing was observed for two decapod spider crab species, Macropodia parva Van Noort & Adema, 1985 and Macropodia rostrata (Linnaeus, 1761, underlining the need for a taxonomic revision of both species. Summarizing the results, our study confirms the application of DNA barcodes as highly effective identification system for the analyzed marine crustaceans of the North Sea and represents an important milestone for modern biodiversity assessment studies using barcode sequences.

  6. Accuracy of optical scanning methods of the Cerec®3D system in the process of making ceramic inlays

    Directory of Open Access Journals (Sweden)

    Trifković Branka

    2010-01-01

    Full Text Available Background/Aim. One of the results of many years of Cerec® 3D CAD/CAM system technological development is implementation of one intraoral and two extraoral optical scanning methods which, depending on the current indications, are applied in making fixed restorations. The aim of this study was to determine the degree of precision of optical scanning methods by the use of the Cerec®3D CAD/CAM system in the process of making ceramic inlays. Methods. The study was conducted in three experimental groups of inlays prepared using the procedure of three methods of scanning Cerec ®3D system. Ceramic inlays made by conventional methodology were the control group. The accuracy of optical scanning methods of the Cerec®3D system computer aided designcomputer aided manufacturing (CAD/CAM was indirectly examined by measuring a marginal gap size between inlays and demarcation preparation by scanning electron microscope (SEM. Results. The results of the study showed a difference in the accuracy of the existing methods of scanning dental CAD/CAM systems. The highest level of accuracy was achieved by the extraoral optical superficial scanning technique. The value of marginal gap size inlays made with the technique of extraoral optical superficial scanning was 32.97 ± 13.17 μ. Techniques of intraoral optical superficial and extraoral point laser scanning showed a lower level of accuracy (40.29 ± 21.46 μ for inlays of intraoral optical superficial scanning and 99.67 ± 37.25 μ for inlays of extraoral point laser scanning. Conclusion. Optical scanning methods in dental CAM/CAM technologies are precise methods of digitizing the spatial models; application of extraoral optical scanning methods provides the hightest precision.

  7. New light on chromotherapy: Grakov's 'Virtual Scanning' system of medical assessment and treatment.

    Science.gov (United States)

    Hankey, Alex; Ewing, Elena

    2007-06-01

    Virtual Scanning incorporates novel uses of colored light into its system of health assessment and therapy. Independent investigations of its effectiveness in Russia and the UK have revealed unique abilities to correct incipient and fully developed chronic conditions. As such it forms an important new addition to the field of Chromotherapy. It differs from most others, in that its development depended on discoveries in neuroscience by its inventor, and subsequent application of new models in computational neuroscience.

  8. New Light on Chromotherapy: Grakov's ?Virtual Scanning? System of Medical Assessment and Treatment

    OpenAIRE

    Hankey, Alex; Ewing, Elena

    2006-01-01

    Virtual Scanning incorporates novel uses of colored light into its system of health assessment and therapy. Independent investigations of its effectiveness in Russia and the UK have revealed unique abilities to correct incipient and fully developed chronic conditions. As such it forms an important new addition to the field of Chromotherapy. It differs from most others, in that its development depended on discoveries in neuroscience by its inventor, and subsequent application of new models in ...

  9. Note: Automated optical focusing on encapsulated devices for scanning light stimulation systems

    International Nuclear Information System (INIS)

    Bitzer, L. A.; Benson, N.; Schmechel, R.

    2014-01-01

    Recently, a scanning light stimulation system with an automated, adaptive focus correction during the measurement was introduced. Here, its application on encapsulated devices is discussed. This includes the changes an encapsulating optical medium introduces to the focusing process as well as to the subsequent light stimulation measurement. Further, the focusing method is modified to compensate for the influence of refraction and to maintain a minimum beam diameter on the sample surface

  10. Note: Automated optical focusing on encapsulated devices for scanning light stimulation systems.

    Science.gov (United States)

    Bitzer, L A; Benson, N; Schmechel, R

    2014-08-01

    Recently, a scanning light stimulation system with an automated, adaptive focus correction during the measurement was introduced. Here, its application on encapsulated devices is discussed. This includes the changes an encapsulating optical medium introduces to the focusing process as well as to the subsequent light stimulation measurement. Further, the focusing method is modified to compensate for the influence of refraction and to maintain a minimum beam diameter on the sample surface.

  11. Design of a MEMS-based retina scanning system for biometric authentication

    Science.gov (United States)

    Woittennek, Franziska; Knobbe, Jens; Pügner, Tino; Schelinski, Uwe; Grüger, Heinrich

    2014-05-01

    There is an increasing need for reliable authentication for a number of applications such as e commerce. Common authentication methods based on ownership (ID card) or knowledge factors (password, PIN) are often prone to manipulations and may therefore be not safe enough. Various inherence factor based methods like fingerprint, retinal pattern or voice identifications are considered more secure. Retina scanning in particular offers both low false rejection rate (FRR) and low false acceptance rate (FAR) with about one in a million. Images of the retina with its characteristic pattern of blood vessels can be made with either a fundus camera or laser scanning methods. The present work describes the optical design of a new compact retina laser scanner which is based on MEMS (Micro Electric Mechanical System) technology. The use of a dual axis micro scanning mirror for laser beam deflection enables a more compact and robust design compared to classical systems. The scanner exhibits a full field of view of 10° which corresponds to an area of 4 mm2 on the retinal surface surrounding the optical disc. The system works in the near infrared and is designed for use under ambient light conditions, which implies a pupil diameter of 1.5 mm. Furthermore it features a long eye relief of 30 mm so that it can be conveniently used by persons wearing glasses. The optical design requirements and the optical performance are discussed in terms of spot diagrams and ray fan plots.

  12. Exploring Canadian Echinoderm Diversity through DNA Barcodes.

    Science.gov (United States)

    Layton, Kara K S; Corstorphine, Erin A; Hebert, Paul D N

    2016-01-01

    DNA barcoding has proven an effective tool for species identification in varied groups of marine invertebrates including crustaceans, molluscs, polychaetes and echinoderms. In this study, we further validate its utility by analyzing almost half of the 300 species of Echinodermata known from Canadian waters. COI sequences from 999 specimens were assigned to 145 BINs. In most cases, species discrimination was straightforward due to the large difference (25-fold) between mean intra- (0.48%) and inter- (12.0%) specific divergence. Six species were flagged for further taxonomic investigation because specimens assigned to them fell into two or three discrete sequence clusters. The potential influence of larval dispersal capacity and glacial events on patterns of genetic diversity is discussed for 19 trans-oceanic species. Although additional research is needed to clarify biogeographic patterns and resolve taxonomic questions, this study represents an important step in the assembly of a DNA barcode library for all Canadian echinoderms, a valuable resource for future biosurveillance programs.

  13. Performance analysis of a compact and low-cost mapping-grade mobile laser scanning system

    Science.gov (United States)

    Julge, Kalev; Vajakas, Toivo; Ellmann, Artu

    2017-10-01

    The performance of a low-cost, self-contained, compact, and easy to deploy mapping-grade mobile laser scanning (MLS) system, which is composed of a light detection and ranging sensor Velodyne VLP-16 and a dual antenna global navigation satellite system/inertial navigation system SBG Systems Ellipse-D, is analyzed. The field tests were carried out in car-mounted and backpack modes for surveying road engineering structures (such as roads, parking lots, underpasses, and tunnels) and coastal erosion zones, respectively. The impact of applied calculation principles on trajectory postprocessing, direct georeferencing, and the theoretical accuracy of the system is analyzed. A calibration method, based on Bound Optimization BY Quadratic Approximation, for finding the boresight angles of an MLS system is proposed. The resulting MLS point clouds are compared with high-accuracy static terrestrial laser scanning data and survey-grade MLS data from a commercially manufactured MLS system. The vertical, horizontal, and relative accuracy are assessed-the root-mean-square error (RMSE) values were determined to be 8, 15, and 3 cm, respectively. Thus, the achieved mapping-grade accuracy demonstrates that this relatively compact and inexpensive self-assembled MLS can be successfully used for surveying the geometry and deformations of terrain, buildings, road, and other engineering structures.

  14. Evaluation of the effect scan pattern has on the trueness and precision of six intraoral digital impression systems.

    Science.gov (United States)

    Mennito, Anthony S; Evans, Zachary P; Lauer, Abigail W; Patel, Ravi B; Ludlow, Mark E; Renne, Walter G

    2018-03-01

    Clinicians have been slow to adopt digital impression technologies due possibly to perceived technique sensitivities involved in data acquisition. This research has two aims: determine whether scan pattern and sequence affects the accuracy of the three-dimensional (3D) model created from this digital impression and to compare the 5 imaging systems with regards to their scanning accuracy for sextant impressions. Six digital intraoral impression systems were used to scan a typodont sextant with optical properties similar to natural teeth. The impressions were taken using five different scan patterns and the resulting digital models were overlayed on a master digital model to determine the accuracy of each scanner performing each scan pattern. Furthermore, regardless of scan pattern, each digital impression system was evaluated for accuracy to the other systems in this same manner. No differences of significance were noted in the accuracy of 3D models created using six distinct scan patterns with one exception involving the CEREC Omnicam. Planmeca Planscan was determined to be the truest scanner while 3Shape Trios was determined to be the most precise for sextant impression making. Scan pattern does not significantly affect the accuracy of the resulting digital model for sextant scanning. Companies who make digital impression systems often recommend a scan pattern specific for their system. However, every clinical scanning scenario is different and may require a different approach. Knowing how important scan pattern is with regards to accuracy would be helpful for guiding a growing number of practitioners who are utilizing this technology. © 2018 Wiley Periodicals, Inc.

  15. A LOW BUDGET MOBILE LASER SCANNING SOLUTION USING ON BOARD SENSORS AND FIELD BUS SYSTEMS OF TODAY'S CONSUMER AUTOMOBILES

    Directory of Open Access Journals (Sweden)

    D. M. M. Vock

    2012-09-01

    Full Text Available Mobile laser scanning systems (MLS offer a great potential for acquiring detailed point cloud data of urban and suburban surroundings with minimum effort. In this paper a new solution for MLSs is presented, requiring solely a combination of a profile laser scanning device and systems that are included in today's serialized end consumer vehicles. While today's mobile laser scan systems require different and expensive additional hardware that needs to be mounted onto the vehicle, the devices included within vehicle electronics offer good alternatives without additional costs.The actual scan consists of a continuous profile scan together with information gathered from on-board sensor modules. In a post- processing step, the sensor data is used to reconstruct the car's trajectory for the period of the scan and, based on this information, the track of the scan device for every measured laser pixel. Synchronization of pixel data and vehicle movement is realized via a timestamp signal which is transmitted to the car's field bus system and the scan device. To generate the final point cloud scenario, the trajectory is interpolated for every single scan point and used to convert its local position within the profile into the global coordinate system (Fig.1, Left.

  16. A beam monitoring and validation system for continuous line scanning in proton therapy

    Science.gov (United States)

    Klimpki, G.; Psoroulas, S.; Bula, C.; Rechsteiner, U.; Eichin, M.; Weber, D. C.; Lomax, A.; Meer, D.

    2017-08-01

    Line scanning represents a faster and potentially more flexible form of pencil beam scanning than conventional step-and-shoot irradiations. It seeks to minimize dead times in beam delivery whilst preserving the possibility of modulating the dose at any point in the target volume. Our second generation proton gantry features irradiations in line scanning mode, but it still lacks a dedicated monitoring and validation system that guarantees patient safety throughout the irradiation. We report on its design and implementation in this paper. In line scanning, we steer the proton beam continuously along straight lines while adapting the speed and/or current frequently to modulate the delivered dose. We intend to prevent delivery errors that could be clinically relevant through a two-stage system: safety level 1 monitors the beam current and position every 10 μs. We demonstrate that direct readings from ionization chambers in the gantry nozzle and Hall probes in the scanner magnets provide required information on current and position, respectively. Interlocks will be raised when measured signals exceed their predefined tolerance bands. Even in case of an erroneous delivery, safety level 1 restricts hot and cold spots of the physically delivered fraction dose to  ±36~mGy (±2% of 2~Gy biologically). In safety level 2—an additional, partly redundant validation step—we compare the integral line profile measured with a strip monitor in the nozzle to a forward-calculated prediction. The comparison is performed between two line applications to detect amplifying inaccuracies in speed and current modulation. This level can be regarded as an online quality assurance of the machine. Both safety levels use devices and functionalities already installed along the beamline. Hence, the presented monitoring and validation system preserves full compatibility of discrete and continuous delivery mode on a single gantry, with the possibility of switching between modes during the

  17. Integrated fringe projection 3D scanning system for large-scale metrology based on laser tracker

    Science.gov (United States)

    Du, Hui; Chen, Xiaobo; Zhou, Dan; Guo, Gen; Xi, Juntong

    2017-10-01

    Large scale components exist widely in advance manufacturing industry,3D profilometry plays a pivotal role for the quality control. This paper proposes a flexible, robust large-scale 3D scanning system by integrating a robot with a binocular structured light scanner and a laser tracker. The measurement principle and system construction of the integrated system are introduced. And a mathematical model is established for the global data fusion. Subsequently, a flexible and robust method and mechanism is introduced for the establishment of the end coordination system. Based on this method, a virtual robot noumenon is constructed for hand-eye calibration. And then the transformation matrix between end coordination system and world coordination system is solved. Validation experiment is implemented for verifying the proposed algorithms. Firstly, hand-eye transformation matrix is solved. Then a car body rear is measured for 16 times for the global data fusion algorithm verification. And the 3D shape of the rear is reconstructed successfully.

  18. DNA barcoding of perennial fruit tree species of agronomic interest in the genus Annona (Annonaceae)

    Science.gov (United States)

    Larranaga, Nerea; Hormaza, José I.

    2015-01-01

    The DNA barcode initiative aims to establish a universal protocol using short genetic sequences to discriminate among animal and plant species. Although many markers have been proposed to become the barcode of plants, the Consortium for the Barcode of Life (CBOL) Plant Working Group recommended using as a core the combination of two portions of plastid coding region, rbcL and matK. In this paper, specific markers based on matK sequences were developed for 7 closely related Annona species of agronomic interest (Annona cherimola, A. reticulata, A. squamosa, A. muricata, A. macroprophyllata, A. glabra, and A. purpurea) and the discrimination power of both rbcL and matK was tested using also sequences of the genus Annona available in the Barcode of Life Database (BOLD) data systems. The specific sequences developed allowed the discrimination among all those species tested. Moreover, the primers generated were validated in six additional species of the genus (A. liebmanniana, A. longiflora, A. montana, A. senegalensis, A. emarginata and A. neosalicifolia) and in an interspecific hybrid (A. cherimola x A. squamosa). The development of a fast, reliable and economic approach for species identification in these underutilized subtropical fruit crops in a very initial state of domestication is of great importance in order to optimize genetic resource management. PMID:26284104

  19. DNA barcoding of perennial fruit tree species of agronomic interest in the genus Annona (Annonaceae

    Directory of Open Access Journals (Sweden)

    Nerea eLarranaga

    2015-07-01

    Full Text Available The DNA barcode initiative aims to establish a universal protocol using short genetic sequences to discriminate among animal and plant species. Although many markers have been proposed to become the barcode of plants, the Consortium for the Barcode of Life (CBOL Plant Working Group recommended using as a core the combination of two portions of plastid coding region, rbcL and matK. In this paper, specific markers based on matK sequences were developed for 7 closely related Annona species of agronomic interest (Annona cherimola, A. reticulata, A. squamosa, A. muricata, A. macroprophyllata, A. glabra and A. purpurea and the discrimination power of both rbcL and matK was tested using also sequences of the genus Annona available in the Barcode of Life Database (BOLD data systems. The specific sequences developed allowed the discrimination among all those species tested. Moreover, the primers generated were validated in six additional species of the genus (A. liebmanniana, A. longiflora, A. montana, A. senegalensis, A. emarginata and A. neosalicifolia and in an interspecific hybrid (A. cherimola x A. squamosa. The development of a fast, reliable and economic approach for species identification in these underutilized subtropical fruit crops in a very initial state of domestication is of great importance in order to optimize genetic resource management.

  20. DNA barcoding of perennial fruit tree species of agronomic interest in the genus Annona (Annonaceae).

    Science.gov (United States)

    Larranaga, Nerea; Hormaza, José I

    2015-01-01

    The DNA barcode initiative aims to establish a universal protocol using short genetic sequences to discriminate among animal and plant species. Although many markers have been proposed to become the barcode of plants, the Consortium for the Barcode of Life (CBOL) Plant Working Group recommended using as a core the combination of two portions of plastid coding region, rbcL and matK. In this paper, specific markers based on matK sequences were developed for 7 closely related Annona species of agronomic interest (Annona cherimola, A. reticulata, A. squamosa, A. muricata, A. macroprophyllata, A. glabra, and A. purpurea) and the discrimination power of both rbcL and matK was tested using also sequences of the genus Annona available in the Barcode of Life Database (BOLD) data systems. The specific sequences developed allowed the discrimination among all those species tested. Moreover, the primers generated were validated in six additional species of the genus (A. liebmanniana, A. longiflora, A. montana, A. senegalensis, A. emarginata and A. neosalicifolia) and in an interspecific hybrid (A. cherimola x A. squamosa). The development of a fast, reliable and economic approach for species identification in these underutilized subtropical fruit crops in a very initial state of domestication is of great importance in order to optimize genetic resource management.

  1. Taxonomic reference libraries for environmental barcoding: a best practice example from diatom research.

    Directory of Open Access Journals (Sweden)

    Jonas Zimmermann

    Full Text Available DNA barcoding uses a short fragment of a DNA sequence to identify a taxon. After obtaining the target sequence it is compared to reference sequences stored in a database to assign an organism name to it. The quality of data in the reference database is the key to the success of the analysis. In the here presented study, multiple types of data have been combined and critically examined in order to create best practice guidelines for taxonomic reference libraries for environmental barcoding. 70 unialgal diatom strains from Berlin waters have been established and cultured to obtain morphological and molecular data. The strains were sequenced for 18S V4 rDNA (the pre-Barcode for protists as well as rbcL data, and identified by microscopy. LM and for some strains also SEM pictures were taken and physical vouchers deposited at the BGBM. 37 freshwater taxa from 15 naviculoid diatom genera were identified. Four taxa from the genera Amphora, Mayamaea, Planothidium and Stauroneis are described here as new. Names, molecular, morphological and habitat data as well as additional images of living cells are also available electronically in the AlgaTerra Information System. All reference sequences (or reference barcodes presented here are linked to voucher specimens in order to provide a complete chain of evidence back to the formal taxonomic literature.

  2. The CNAO dose delivery system for modulated scanning ion beam radiotherapy

    Energy Technology Data Exchange (ETDEWEB)

    Giordanengo, S.; Marchetto, F. [Istituto Nazionale di Fisica Nucleare, Section of Torino, Torino 10125 (Italy); Garella, M. A.; Donetti, M. [Istituto Nazionale di Fisica Nucleare, Section of Torino, Torino 10125, Italy and Centro Nazionale Adroterapia Oncologica, Pavia 27100 (Italy); Bourhaleb, F.; Monaco, V.; Hosseini, M. A.; Peroni, C.; Sacchi, R.; Cirio, R. [Istituto Nazionale di Fisica Nucleare, Section of Torino, Torino 10125, Italy and Physics Department, University of Torino, Torino 10125 (Italy); Ciocca, M.; Mirandola, A. [Centro Nazionale Adroterapia Oncologica, Pavia 27100 (Italy)

    2015-01-15

    Purpose: This paper describes the system for the dose delivery currently used at the Centro Nazionale di Adroterapia Oncologica (CNAO) for ion beam modulated scanning radiotherapy. Methods: CNAO Foundation, Istituto Nazionale di Fisica Nucleare and University of Torino have designed, built, and commissioned a dose delivery system (DDS) to monitor and guide ion beams accelerated by a dedicated synchrotron and to distribute the dose with a full 3D scanning technique. Protons and carbon ions are provided for a wide range of energies in order to cover a sizable span of treatment depths. The target volume, segmented in several layers orthogonally to the beam direction, is irradiated by thousands of pencil beams which must be steered and held to the prescribed positions until the prescribed number of particles has been delivered. For the CNAO beam lines, these operations are performed by the DDS. The main components of this system are two independent beam monitoring detectors, called BOX1 and BOX2, interfaced with two control systems performing the tasks of real-time fast and slow control, and connected to the scanning magnets and the beam chopper. As a reaction to any condition leading to a potential hazard, a DDS interlock signal is sent to the patient interlock system which immediately stops the irradiation. The essential tasks and operations performed by the DDS are described following the data flow from the treatment planning system through the end of the treatment delivery. Results: The ability of the DDS to guarantee a safe and accurate treatment was validated during the commissioning phase by means of checks of the charge collection efficiency, gain uniformity of the chambers, and 2D dose distribution homogeneity and stability. A high level of reliability and robustness has been proven by three years of system activity needing rarely more than regular maintenance and working with 100% uptime. Four identical and independent DDS devices have been tested showing

  3. On site DNA barcoding by nanopore sequencing.

    Directory of Open Access Journals (Sweden)

    Michele Menegon

    Full Text Available Biodiversity research is becoming increasingly dependent on genomics, which allows the unprecedented digitization and understanding of the planet's biological heritage. The use of genetic markers i.e. DNA barcoding, has proved to be a powerful tool in species identification. However, full exploitation of this approach is hampered by the high sequencing costs and the absence of equipped facilities in biodiversity-rich countries. In the present work, we developed a portable sequencing laboratory based on the portable DNA sequencer from Oxford Nanopore Technologies, the MinION. Complementary laboratory equipment and reagents were selected to be used in remote and tough environmental conditions. The performance of the MinION sequencer and the portable laboratory was tested for DNA barcoding in a mimicking tropical environment, as well as in a remote rainforest of Tanzania lacking electricity. Despite the relatively high sequencing error-rate of the MinION, the development of a suitable pipeline for data analysis allowed the accurate identification of different species of vertebrates including amphibians, reptiles and mammals. In situ sequencing of a wild frog allowed us to rapidly identify the species captured, thus confirming that effective DNA barcoding in the field is possible. These results open new perspectives for real-time-on-site DNA sequencing thus potentially increasing opportunities for the understanding of biodiversity in areas lacking conventional laboratory facilities.

  4. [Nurses' Innovation Acceptance of Barcode Technology].

    Science.gov (United States)

    Cheng, Hui-Ping; Lee, Ting-Ting; Liu, Chieh-Yu; Hou, I-Ching

    2016-04-01

    Healthcare organizations have increasingly adopted barcode technology to improve care quality and work efficiency. Barcode technology is simple to use, so it is frequently used in patient identification, medication administration, and specimen collection processes. This study used a technology acceptance model and innovation diffusion theory to explore the innovation acceptance of barcode technology by nurses. The data were collected using a structured questionnaire with open-ended questions that was based on the technology acceptance model and innovation diffusion theory. The questionnaire was distributed to and collected from 200 nurses from March to May 2014. Data on laboratory reporting times and specimen rejection rates were collected as well. Variables that were found to have a significant relationship (pinnovation acceptance included (in order of importance): perceived usefulness (r=.722), perceived ease of use (r=.720), observability (r=.579), compatibility (r=.364), and trialability (r=.344). N-level nurses demonstrated higher acceptance than their N1 and N2 level peers (F=3.95, ptechnology has been accepted by nurses and that this technology effectively decreases both laboratory reporting times and specimen rejection rates. However, network speed and workflow should be further improved in order to benefit clinical practice.

  5. Highlighting Astyanax Species Diversity through DNA Barcoding

    Science.gov (United States)

    Oliveira, Carlos Alexandre Miranda; de Melo, Filipe Augusto Gonçalves; Bertaco, Vinicius de Araújo; de Astarloa, Juan M. Díaz; Rosso, Juan J.; Foresti, Fausto; Oliveira, Claudio

    2016-01-01

    DNA barcoding has been used extensively to solve taxonomic questions and identify new species. Neotropical fishes are found in a wide variety of shapes and sizes, with a large number of species yet to be described, many of which are very difficult to identify. Characidae is the most species-rich family of the Characiformes, and many of its genera are affected by taxonomic uncertainties, including the widely-distributed, species-rich genus Astyanax. In this study, we present an extensive analysis of Astyanax covering almost its entire area of occurrence, based on DNA barcoding. The use of different approaches (ABGD, GMYC and BIN) to the clustering of the sequences revealed ample consistency in the results obtained by the initial cutoff value of 2% divergence for putative species in the Neighbor-Joining analysis using the Kimura-2-parameter model. The results indicate the existence of five Astyanax lineages. Some groups, such as that composed by the trans-Andean forms, are mostly composed of well-defined species, and in others a number of nominal species are clustered together, hampering the delimitation of species, which in many cases proved impossible. The results confirm the extreme complexity of the systematics of the genus Astyanax and show that DNA barcoding can be an useful tool to address these complexes questions. PMID:27992537

  6. Fungi in Thailand: a case study of the efficacy of an ITS barcode for automatically identifying species within the Annulohypoxylon and Hypoxylon genera.

    Directory of Open Access Journals (Sweden)

    Nuttika Suwannasai

    Full Text Available Thailand, a part of the Indo-Burma biodiversity hotspot, has many endemic animals and plants. Some of its fungal species are difficult to recognize and separate, complicating assessments of biodiversity. We assessed species diversity within the fungal genera Annulohypoxylon and Hypoxylon, which produce biologically active and potentially therapeutic compounds, by applying classical taxonomic methods to 552 teleomorphs collected from across Thailand. Using probability of correct identification (PCI, we also assessed the efficacy of automated species identification with a fungal barcode marker, ITS, in the model system of Annulohypoxylon and Hypoxylon. The 552 teleomorphs yielded 137 ITS sequences; in addition, we examined 128 GenBank ITS sequences, to assess biases in evaluating a DNA barcode with GenBank data. The use of multiple sequence alignment in a barcode database like BOLD raises some concerns about non-protein barcode markers like ITS, so we also compared species identification using different alignment methods. Our results suggest the following. (1 Multiple sequence alignment of ITS sequences is competitive with pairwise alignment when identifying species, so BOLD should be able to preserve its present bioinformatics workflow for species identification for ITS, and possibly therefore with at least some other non-protein barcode markers. (2 Automated species identification is insensitive to a specific choice of evolutionary distance, contributing to resolution of a current debate in DNA barcoding. (3 Statistical methods are available to address, at least partially, the possibility of expert misidentification of species. Phylogenetic trees discovered a cryptic species and strongly supported monophyletic clades for many Annulohypoxylon and Hypoxylon species, suggesting that ITS can contribute usefully to a barcode for these fungi. The PCIs here, derived solely from ITS, suggest that a fungal barcode will require secondary markers in

  7. Design and Development of a Scanning Airborne Direct Detection Doppler Lidar System

    Science.gov (United States)

    Gentry, Bruce; McGill, Matthew; Schwemmer, Geary; Hardesty, Michael; Brewer, Alan; Wilkerson, Thomas; Atlas, Robert; Sirota, Marcos; Lindemann, Scott

    2006-01-01

    In the fall of 2005 we began developing an airborne scanning direct detection molecular Doppler lidar. The instrument is being built as part of the Tropospheric Wind Lidar Technology Experiment (TWiLiTE), a three year project selected by the NASA Earth Sun Technology Office under the Instrument Incubator Program. The TWiLiTE project is a collaboration involving scientists and engineers from NASA Goddard Space Flight Center, NOAA ESRL, Utah State University Space Dynamics Lab, Michigan Aerospace Corporation and Sigma Space Corporation. The TWiLiTE instrument will leverage significant research and development investments made by NASA Goddard and it's partners in the past several years in key lidar technologies and sub-systems (lasers, telescopes, scanning systems, detectors and receivers) required to enable spaceborne global wind lidar measurement. These sub-systems will be integrated into a complete molecular direct detection Doppler wind lidar system designed for autonomous operation on a high altitude aircraft, such as the NASA WB57. The WB57 flies at an altitude of 18 km and from this vantage point the nadir viewing Doppler lidar will be able to profile winds through the full troposphere. The TWiLiTE integrated airborne Doppler lidar instrument will be the first demonstration of a airborne scanning direct detection Doppler lidar and will serve as a critical milestone on the path to a future spaceborne tropospheric wind system. In addition to being a technology testbed for space based tropospheric wind lidar, when completed the TWiLiTE high altitude airborne lidar will be used for studying mesoscale dynamics and storm research (e.g. winter storms, hurricanes) and could be used for calibration and validation of satellite based wind systems such as ESA's Aeolus Atmospheric Dynamics Mission. The TWiLiTE Doppler lidar will have the capability to profile winds in clear air from the aircraft altitude of 18 km to the surface with 250 m vertical resolution and < 2mls

  8. Microgap Evaluation of Novel Hydrophilic and Hydrophobic Obturating System: A Scanning Electron Microscope Study.

    Science.gov (United States)

    Hegde, Vibha; Murkey, Laxmi Suresh

    2017-05-01

    The purpose of an endodontic obturation is to obtain a fluid tight hermetic seal of the entire root canal system. There has been an evolution of different materials and techniques to achieve this desired gap free fluid tight seal due to presence of anatomic complexity of the root canal system. To compare the microgap occurring in root canals obturated with hydrophilic versus hydrophobic systems using scanning electron microscope. Sixty extracted human single-rooted premolars were decoronated, instrumented using NiTi rotary instruments. The samples (n=20) were divided into three groups and obturated with Group A - (control group) gutta-percha with AH Plus, Group B - C-point with Smartpaste Bio and Group C - gutta-percha with guttaflow 2. The samples were split longitudinally into two halves and microgap was observed under scanning electron microscope in the apical 3 mm of the root canal. Group A (control) showed a mean difference of 8.54 as compared to 5.76 in group C. Group B showed the lowest mean difference of 0.83 suggesting that the hydrophilic system (C-point/Smartpaste Bio) produced least microgap as compared to the hydrophobic groups. Novel hydrophilic obturating system (C-points/ Smart-paste Bio) showed better seal and least microgap as compared to gutta-percha/guttaflow 2 and gutta-percha/ AH plus which showed gap at the sealer dentin interface due to less penetration and bonding of these hydrophobic obturating system.

  9. A Flexile and High Precision Calibration Method for Binocular Structured Light Scanning System

    Directory of Open Access Journals (Sweden)

    Jianying Yuan

    2014-01-01

    Full Text Available 3D (three-dimensional structured light scanning system is widely used in the field of reverse engineering, quality inspection, and so forth. Camera calibration is the key for scanning precision. Currently, 2D (two-dimensional or 3D fine processed calibration reference object is usually applied for high calibration precision, which is difficult to operate and the cost is high. In this paper, a novel calibration method is proposed with a scale bar and some artificial coded targets placed randomly in the measuring volume. The principle of the proposed method is based on hierarchical self-calibration and bundle adjustment. We get initial intrinsic parameters from images. Initial extrinsic parameters in projective space are estimated with the method of factorization and then upgraded to Euclidean space with orthogonality of rotation matrix and rank 3 of the absolute quadric as constraint. Last, all camera parameters are refined through bundle adjustment. Real experiments show that the proposed method is robust, and has the same precision level as the result using delicate artificial reference object, but the hardware cost is very low compared with the current calibration method used in 3D structured light scanning system.

  10. Superresolution upgrade for confocal spinning disk systems using image scanning microscopy (Conference Presentation)

    Science.gov (United States)

    Isbaner, Sebastian; Hähnel, Dirk; Gregor, Ingo; Enderlein, Jörg

    2017-02-01

    Confocal Spinning Disk Systems are widely used for 3D cell imaging because they offer the advantage of optical sectioning at high framerates and are easy to use. However, as in confocal microscopy, the imaging resolution is diffraction limited, which can be theoretically improved by a factor of 2 using the principle of Image Scanning Microscopy (ISM) [1]. ISM with a Confocal Spinning Disk setup (CSDISM) has been shown to improve contrast as well as lateral resolution (FWHM) from 201 +/- 20 nm to 130 +/- 10 nm at 488 nm excitation. A minimum total acquisition time of one second per ISM image makes this method highly suitable for 3D live cell imaging [2]. Here, we present a multicolor implementation of CSDISM for the popular Micro-Manager Open Source Microscopy platform. Since changes in the optical path are not necessary, this will allow any researcher to easily upgrade their standard Confocal Spinning Disk system at remarkable low cost ( 5000 USD) with an ISM superresolution option. [1]. Müller, C.B. and Enderlein, J. Image Scanning Microscopy. Physical Review Letters 104, (2010). [2]. Schulz, O. et al. Resolution doubling in fluorescence microscopy with confocal spinning-disk image scanning microscopy. Proceedings of the National Academy of Sciences of the United States of America 110, 21000-5 (2013).

  11. Application of information theory to the design of line-scan imaging systems

    Science.gov (United States)

    Huck, F. O.; Park, S. K.; Halyo, N.; Stallman, S.

    1981-01-01

    Information theory is used to formulate a single figure of merit for assessing the performance of line scan imaging systems as a function of their spatial response (point spread function or modulation transfer function), sensitivity, sampling and quantization intervals, and the statistical properties of a random radiance field. Computational results for the information density and efficiency (i.e., the ratio of information density to data density) are intuitively satisfying and compare well with experimental and theoretical results obtained by earlier investigators concerned with the performance of TV systems.

  12. The Simulation Research on Capturing Time of Three Scanning Styles in Laser Tracking System

    OpenAIRE

    Leihong Zhang; Liujie Sun; Chunfang Wang; Zhen Liu

    2012-01-01

    In the optical communication, the choosing scanning style is important for the optical communication, because the illuminating laser beam is narrow and the communication range is long. In this study, three typical scanning styles of raster scan, spiral scan and square spiral scan are compared with each other. The characteristics of the scanning styles are introduced. The numerical simulation model is built. The capturing time at the same condition is computed. The capturing time is affected b...

  13. Molecular species identification of Central European ground beetles (Coleoptera: Carabidae) using nuclear rDNA expansion segments and DNA barcodes.

    Science.gov (United States)

    Raupach, Michael J; Astrin, Jonas J; Hannig, Karsten; Peters, Marcell K; Stoeckle, Mark Y; Wägele, Johann-Wolfgang

    2010-09-13

    The identification of vast numbers of unknown organisms using DNA sequences becomes more and more important in ecological and biodiversity studies. In this context, a fragment of the mitochondrial cytochrome c oxidase I (COI) gene has been proposed as standard DNA barcoding marker for the identification of organisms. Limitations of the COI barcoding approach can arise from its single-locus identification system, the effect of introgression events, incomplete lineage sorting, numts, heteroplasmy and maternal inheritance of intracellular endosymbionts. Consequently, the analysis of a supplementary nuclear marker system could be advantageous. We tested the effectiveness of the COI barcoding region and of three nuclear ribosomal expansion segments in discriminating ground beetles of Central Europe, a diverse and well-studied invertebrate taxon. As nuclear markers we determined the 18S rDNA: V4, 18S rDNA: V7 and 28S rDNA: D3 expansion segments for 344 specimens of 75 species. Seventy-three species (97%) of the analysed species could be accurately identified using COI, while the combined approach of all three nuclear markers provided resolution among 71 (95%) of the studied Carabidae. Our results confirm that the analysed nuclear ribosomal expansion segments in combination constitute a valuable and efficient supplement for classical DNA barcoding to avoid potential pitfalls when only mitochondrial data are being used. We also demonstrate the high potential of COI barcodes for the identification of even closely related carabid species.

  14. A line-scan hyperspectral system for high-throughput Raman chemical imaging.

    Science.gov (United States)

    Qin, Jianwei; Chao, Kuanglin; Kim, Moon S

    2014-01-01

    A line-scan hyperspectral system was developed to enable Raman chemical imaging for large sample areas. A custom-designed 785 nm line laser based on a scanning mirror serves as an excitation source. A 45° dichroic beam splitter reflects the laser light to form a 24 cm × 1 mm excitation line normally incident on the sample surface. Raman signals along the laser line are collected by a detection module consisting of a dispersive imaging spectrograph and a CCD camera. A hypercube is accumulated line by line as a motorized table moves the samples transversely through the laser line. The system covers a Raman shift range of -648.7 to 2889.0 cm(-1) and a 23 cm wide area. An example application for authenticating milk powder is presented to demonstrate the system performance. In 4 min the system acquired a 512 × 110 × 1024 hypercube (56  320 spectra) from four, 47 mm diameter Petri dishes containing four powder samples. Chemical images were created for detecting two adulterants (melamine and dicyandiamide) that had been mixed into the milk powder.

  15. MEMS scanner mirror based system for retina scanning and in eye projection

    Science.gov (United States)

    Woittennek, Franziska; Knobbe, Jens; Pügner, Tino; Dallmann, Hans-Georg; Schelinski, Uwe; Grüger, Heinrich

    2015-02-01

    Many applications could benefit from miniaturized systems to scan blood vessels behind the retina in the human eye, so called "retina scanning". This reaches from access control to sophisticated security applications and medical devices. High volume systems for consumer applications require low cost and a user friendly operation. For example this includes no need for removal of glasses and self-adjustment, in turn guidance of focus and point of attraction by simultaneous projection for the user. A new system has been designed based on the well-known resonantly driven 2-d scanner mirror of Fraunhofer IPMS. A combined NIR and VIS laser system illuminates the eye through an eye piece designed for an operating distance allowing the use of glasses and granting sufficient field of view. This usability feature was considered to be more important than highest miniaturization. The modulated VIS laser facilitates the projection of an image directly onto the retina. The backscattered light from the continuous NIR laser contains the information of the blood vessels and is detected by a highly sensitive photo diode. A demonstrational setup has been realized including readout and driving electronics. The laser power was adjusted to an eye-secure level. Additional security features were integrated. Test measurements revealed promising results. In a first demonstration application the detection of biometric pattern of the blood vessels was evaluated for issues authentication in.

  16. MIMIC: An Innovative Methodology for Determining Mobile Laser Scanning System Point Density

    Directory of Open Access Journals (Sweden)

    Conor Cahalane

    2014-08-01

    Full Text Available Understanding how various Mobile Mapping System (MMS laser hardware configurations and operating parameters exercise different influence on point density is important for assessing system performance, which in turn facilitates system design and MMS benchmarking. Point density also influences data processing, as objects that can be recognised using automated algorithms generally require a minimum point density. Although obtaining the necessary point density impacts on hardware costs, survey time and data storage requirements, a method for accurately and rapidly assessing MMS performance is lacking for generic MMSs. We have developed a method for quantifying point clouds collected by an MMS with respect to known objects at specified distances using 3D surface normals, 2D geometric formulae and line drawing algorithms. These algorithms were combined in a system called the Mobile Mapping Point Density Calculator (MIMIC and were validated using point clouds captured by both a single scanner and a dual scanner MMS. Results from MIMIC were promising: when considering the number of scan profiles striking the target, the average error equated to less than 1 point per scan profile. These tests highlight that MIMIC is capable of accurately calculating point density for both single and dual scanner MMSs.

  17. Development of a wing-beat-modulation scanning lidar system for insect studies

    Science.gov (United States)

    Tauc, Martin Jan; Fristrup, Kurt M.; Shaw, Joseph A.

    2017-08-01

    The spatial distributions of flying insects are not well understood since most sampling methods - Malaise traps, sticky traps, vacuum traps, light traps - are not suited to documenting movements or changing distributions of various insects on short time scales. These methods also capture and kill the insects. To noninvasively monitor the spatial distributions of flying insects, we developed and implemented a scanning lidar system that measured wing-beat-modulated scattered laser light. The oscillating signal from wing-beat returns allowed for reliable separation of lidar returns for insects and stationary objects. Transmitting and receiving optics were mounted to a telescope that was attached to a scanning mount. As it scanned, the lidar collected and analyzed the light scattered from insect wings of various species. Mount position and pulse time-of-flight determined spatial location and spectral analysis of the backscattered light provided clues to insect identity. During one day of a four-day field campaign at Grand Teton National Park in June of 2016, 76 very likely insects and 662 somewhat likely insects were detected, with a maximum range to the insect of 87.6 m for very likely insects

  18. Pictorial AR Tag with Hidden Multi-Level Bar-Code and Its Potential Applications

    Directory of Open Access Journals (Sweden)

    Huy Le

    2017-09-01

    Full Text Available For decades, researchers have been trying to create intuitive virtual environments by blending reality and virtual reality, thus enabling general users to interact with the digital domain as easily as with the real world. The result is “augmented reality” (AR. AR seamlessly superimposes virtual objects on to a real environment in three dimensions (3D and in real time. One of the most important parts that helps close the gap between virtuality and reality is the marker used in the AR system. While pictorial marker and bar-code marker are the two most commonly used marker types in the market, they have some disadvantages in visual and processing performance. In this paper, we present a novelty method that combines the bar-code with the original feature of a colour picture (e.g., photos, trading cards, advertisement’s figure. Our method decorates on top of the original pictorial images additional features with a single stereogram image that optically conceals a multi-level (3D bar-code. Thus, it has a larger capability of storing data compared to the general 1D barcode. This new type of marker has the potential of addressing the issues that the current types of marker are facing. It not only keeps the original information of the picture but also contains encoded numeric information. In our limited evaluation, this pictorial bar-code shows a relatively robust performance under various conditions and scaling; thus, it provides a promising AR approach to be used in many applications such as trading card games, educations, and advertisements.

  19. Character-based, population-level DNA barcoding in Mexican species of Zamia L. (Zamiaceae: Cycadales).

    Science.gov (United States)

    Nicolalde-Morejón, Fernando; Vergara-Silva, Francisco; González-Astorga, Jorge; Stevenson, Dennis W

    2010-12-01

    With the recent proposal of matK and rbcL as core plant DNA barcoding regions by the Consortium for the Barcoding of Life Plant Working Group, the construction of reference libraries in the botanical DNA barcoding initiative has entered a new phase. However, in a recent DNA barcoding study in the three Mexican genera of the gymnosperm order Cycadales, we found that neither matK nor rbcL allow high levels of molecular identification of previously established species. Our data analysis in that study rested on the "Characteristic Attributes Organization System" (CAOS), a character-based algorithm for the definition of "DNA diagnostics." Here, we use CAOS to analyze a population-level molecular data set in Zamia, one of the three cycad genera occurring in Mexico, whose populations display contrasting biogeographic patterns. Our population-level study, which includes all species in the region formally known as Megamexico, is restricted to the genome region, which showed the best single-locus molecular identification performance in our previous study-namely, the noncoding intergenic chloroplast spacer psbK-I. Our comparison of single-individual vs. population-level psbK-I datasets in Zamia indicates that CAOS analyses are sensitive to slight alignment changes, which in turn derive from the different amounts of molecular variation present in each matrix type. We, therefore, suggest that character-based studies that involve population-level data should contemplate this type of comparison between data matrices, before a set of DNA diagnostics in a given DNA barcoding reference library is considered definitive.

  20. Benefits and Limitations of DNA Barcoding and Metabarcoding in Herbal Product Authentication

    Science.gov (United States)

    Raclariu, Ancuta Cristina; Heinrich, Michael; Ichim, Mihael Cristin

    2017-01-01

    Abstract Introduction Herbal medicines play an important role globally in the health care sector and in industrialised countries they are often considered as an alternative to mono‐substance medicines. Current quality and authentication assessment methods rely mainly on morphology and analytical phytochemistry‐based methods detailed in pharmacopoeias. Herbal products however are often highly processed with numerous ingredients, and even if these analytical methods are accurate for quality control of specific lead or marker compounds, they are of limited suitability for the authentication of biological ingredients. Objective To review the benefits and limitations of DNA barcoding and metabarcoding in complementing current herbal product authentication. Method Recent literature relating to DNA based authentication of medicinal plants, herbal medicines and products are summarised to provide a basic understanding of how DNA barcoding and metabarcoding can be applied to this field. Results Different methods of quality control and authentication have varying resolution and usefulness along the value chain of these products. DNA barcoding can be used for authenticating products based on single herbal ingredients and DNA metabarcoding for assessment of species diversity in processed products, and both methods should be used in combination with appropriate hyphenated chemical methods for quality control. Conclusions DNA barcoding and metabarcoding have potential in the context of quality control of both well and poorly regulated supply systems. Standardisation of protocols for DNA barcoding and DNA sequence‐based identification are necessary before DNA‐based biological methods can be implemented as routine analytical approaches and approved by the competent authorities for use in regulated procedures. © 2017 The Authors. Phytochemical Analysis Published by John Wiley & Sons Ltd. PMID:28906059

  1. Organization of the two-level memory in the image processing system on scanning measuring projectors

    International Nuclear Information System (INIS)

    Sychev, A.Yu.

    1977-01-01

    Discussed are the problems of improving the efficiency of the system for processing pictures taken in bubble chambers with the use of scanning measuring projectors. The system comprises 20 to 30 pro ectors linked with the ICL-1903A computer provided with a mainframe memory, 64 kilobytes in size. Because of the insufficient size of a mainframe memory, a part of the programs and data is located in a second-level memory, i.e. in an external memory. The analytical model described herein is used to analyze the effect of the memory organization on the characteristics of the system. It is shown that organization of pure procedures and introduction of the centralized control of the tWo-leVel memory result in substantial improvement of the efficiency of the picture processing system

  2. Investigation of computer-aided diagnosis system for bone scans: a retrospective analysis in 406 patients.

    Science.gov (United States)

    Tokuda, Osamu; Harada, Yuko; Ohishi, Yona; Matsunaga, Naofumi; Edenbrandt, Lars

    2014-05-01

    The aim of this study was to investigate the diagnostic ability of a completely automated computer-assisted diagnosis (CAD) system to detect metastases in bone scans by two patterns: one was per region, and the other was per patient. This study included 406 patients with suspected metastatic bone tumors who underwent whole-body bone scans that were analyzed by the automated CAD system. The patients were divided into four groups: a group with prostatic cancer (N = 71), breast cancer (N = 109), males with other cancers (N = 153), and females with other cancers (N = 73). We investigated the bone scan index and artificial neural network (ANN), which are parameters that can be used to classify bone scans to determine whether there are metastases. The sensitivities, specificities, positive predictive value (PPV), negative predictive value (NPV), and accuracies for the four groups were compared. Receiver operating characteristic (ROC) analyses of region-based ANN were performed to compare the diagnostic performance of the automated CAD system. There were no significant differences in the sensitivity, specificity, or NPV between the four groups. The PPVs of the group with prostatic cancer (51.0 %) were significantly higher than those of the other groups (P < 0.01). The accuracy of the group with prostatic cancer (81.5 %) was significantly higher than that of the group with breast cancer (68.6 %) and the females with other cancers (65.9 %) (P < 0.01). For the evaluation of the ROC analysis of region-based ANN, the highest Az values for the groups with prostatic cancer, breast cancer, males with other cancers, and females with other cancers were 0.82 (ANN = 0.4, 0.5, 0.6, 0.7, and 0.8), 0.83 (ANN = 0.7), 0.81 (ANN = 0.5), and 0.81 (ANN = 0.6), respectively. The special CAD system "BONENAVI" trained with a Japanese database appears to have significant potential in assisting physicians in their clinical routine. However, an improved CAD system depending on the primary lesion

  3. Investigation of computer-aided diagnosis system for bone scans. A retrospective analysis in 406 patients

    International Nuclear Information System (INIS)

    Tokuda, Osamu; Harada, Yuko; Ohishi, Yona; Matsunaga, Naofumi; Edenbrandt, L.

    2014-01-01

    The aim of this study was to investigate the diagnostic ability of a completely automated computer-assisted diagnosis (CAD) system to detect metastases in bone scans by two patterns: one was per region, and the other was per patient. This study included 406 patients with suspected metastatic bone tumors who underwent whole-body bone scans that were analyzed by the automated CAD system. The patients were divided into four groups: a group with prostatic cancer (N=71), breast cancer (N=109), males with other cancers (N=153), and females with other cancers (N=73). We investigated the bone scan index and artificial neural network (ANN), which are parameters that can be used to classify bone scans to determine whether there are metastases. The sensitivities, specificities, positive predictive value (PPV), negative predictive value (NPV), and accuracies for the four groups were compared. Receiver operating characteristic (ROC) analyses of region-based ANN were performed to compare the diagnostic performance of the automated CAD system. There were no significant differences in the sensitivity, specificity, or NPV between the four groups. The Pps of the group with prostatic cancer (51.0%) were significantly higher than those of the other groups (P < 0.01). The accuracy of the group with prostatic cancer (81.5%) was significantly higher than that of the group with breast cancer (68.6%) and the females with other cancers (65.9%) (P < 0.01). For the evaluation of the Roc analysis of region-based Ann, the highest Az values for the groups with prostatic cancer, breast cancer, males with other cancers, and females with other cancers were 0.82 (Ann=0.4, 0.5, 0.6, 0.7, and 0.8), 0.83 (Ann=0.7), 0.81 (Ann=0.5), and 0.81 (Ann=0.6), respectively. The special CAD system 'Bovine' trained with a Japanese database appears to have significant potential in assisting physicians in their clinical routine. However, an improved CAD system depending on the primary lesion of the cancer is

  4. Reqscan: An open source solution for laboratory requisition scanning, archiving and retrieval

    Directory of Open Access Journals (Sweden)

    Eviatar Bach

    2015-01-01

    Full Text Available Requisition storage and retrieval are an integral part of the outpatient laboratory testing process. It is frequently necessary to review an original requisition to confirm the ordering physician, patient demographics, diagnostic information, and requested tests. Manual retrieval of a paper requisition is time-consuming and tedious. Although commercial solutions exist for the scanning and archiving of barcoded paper requisitions, the tools to accomplish this are freely available from the open source software community. We present a simple dedicated piece of software, Reqscan, for scanning patient laboratory requisitions, finding all barcode information, and saving the requisition as a portable document format named according the barcode(s found. This Python application offers a simple solution to patient requisition digitization. Reqscan has been successfully tested and implemented into routine practice for storage and retrieval of outpatient requisitions at St. Paul′s Hospital, Department of Pathology and Laboratory Medicine in Vancouver, British Columbia, Canada.

  5. Covert Photonic Barcodes Based on Light Controlled Acidichromism in Organic Dye Doped Whispering-Gallery-Mode Microdisks.

    Science.gov (United States)

    Gao, Zhenhua; Wei, Cong; Yan, Yongli; Zhang, Wei; Dong, Haiyun; Zhao, Jinyang; Yi, Jun; Zhang, Chunhuan; Li, Yong Jun; Zhao, Yong Sheng

    2017-08-01

    Photonic barcodes with a small footprint have demonstrated a great value for multiplexed high-throughput bioassays and tracking systems. Attempts to develop coding technology tend to focus on the generation of featured barcodes both with high coding capacity and accurate recognition. In this work, a strategy to design photonic barcodes is proposed based on whispering-gallery-mode (WGM) modulations in dye-doped microdisk resonant cavities, where each modulated photoluminescence spectrum constitutes the fingerprint of a corresponding microdisk. The WGM-based barcodes can achieve infinite encoding capacity through tuning the dimensions of the microdisks. These photonic barcodes can be well disguised and decoded based on the light controlled proton release and acidichromism of the organic materials, which are essential to fulfill the functions of anti-counterfeiting, information security, and so on. The results will pave an avenue to new types of flexible WGM-based components for optical data recording and security labels. © 2017 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  6. Internal Transcribed Spacer (ITS), an ideal DNA barcode for species ...

    African Journals Online (AJOL)

    Background: DNA barcoding is a technique used to identify species based on species-specific differences in short regions of their DNA. It is widely used in species discrimination of medicinal plants and traditional medicines. Materials and Methods: In the present study, four potential DNA barcodes, namely rbcL, matK, ...

  7. Dissecting host-associated communities with DNA barcodes

    Science.gov (United States)

    Pierce, Naomi E.

    2016-01-01

    DNA barcoding and metabarcoding methods have been invaluable in the study of interactions between host organisms and their symbiotic communities. Barcodes can help identify individual symbionts that are difficult to distinguish using morphological characters, and provide a way to classify undescribed species. Entire symbiont communities can be characterized rapidly using barcoding and especially metabarcoding methods, which is often crucial for isolating ecological signal from the substantial variation among individual hosts. Furthermore, barcodes allow the evolutionary histories of symbionts and their hosts to be assessed simultaneously and in reference to one another. Here, we describe three projects illustrating the utility of barcodes for studying symbiotic interactions: first, we consider communities of arthropods found in the ant-occupied domatia of the East African ant-plant Vachellia (Acacia) drepanolobium; second, we examine communities of arthropod and protozoan inquilines in three species of Nepenthes pitcher plant in South East Asia; third, we investigate communities of gut bacteria of South American ants in the genus Cephalotes. Advances in sequencing and computation, and greater database connectivity, will continue to expand the utility of barcoding methods for the study of species interactions, especially if barcoding can be approached flexibly by making use of alternative genetic loci, metagenomes and whole-genome data. This article is part of the themed issue ‘From DNA barcodes to biomes’. PMID:27481780

  8. Real-Time Barcode Detection and Classification Using Deep Learning

    DEFF Research Database (Denmark)

    Hansen, Daniel Kold; Nasrollahi, Kamal; Rasmussen, Christoffer Bøgelund

    2017-01-01

    Barcodes, in their different forms, can be found on almost any packages available in the market. Detecting and then decoding of barcodes have therefore great applications. We describe how to adapt the state-of-the- art deep learning-based detector of You Only Look Once (YOLO) for the purpose...

  9. Developing DNA barcoding (matK) primers for marama bean ...

    African Journals Online (AJOL)

    DNA barcoding is based on the premise that a short standardized DNA barcoding sequence can distinguish individuals of a species because the genetic variation between species exceeds that within species. Information on genetic variation of breeding materials helps to maintain genetic diversity and sustains long term ...

  10. Contribution towards the development of a DNA barcode reference ...

    African Journals Online (AJOL)

    DNA barcoding is a widely used molecular approach for species cataloging for unambiguous identification and conservation. In the present study, DNA barcoding of some West African mammals were performed with six new mitochondrial CO1 sequences for Civettictis civetta, Tadarida nigeriae, Orycteropus afer, ...

  11. DNA Barcoding and PBL in an Australian Postsecondary College

    Science.gov (United States)

    Cross, Joseph; Garard, Helen; Currie, Tina

    2018-01-01

    DNA barcoding is increasingly being introduced into biological science educational curricula worldwide. The technique has a number of features that make it ideal for science curricula and particularly for Project-Based Learning (PBL). This report outlines the development of a DNA barcoding project in an Australian TAFE college, which also combined…

  12. Systematic identification of African Sapindaceae using DNA barcoding

    African Journals Online (AJOL)

    This research aimed at exploring the diversity of Sapindaceae in West and Central Africa with particular emphasis on identification of the plant samples as well as generation of DNA barcodes with a view to sharing the DNA barcode sequence(s) in a public database. These were achieved following standard protocols.

  13. DNA barcoding of South Africa's ornamental freshwater fish – are ...

    African Journals Online (AJOL)

    DNA barcoding of South Africa's ornamental freshwater fish – are the names reliable? ... African Journal of Aquatic Science ... Because its effective implementation requires accurate identification, the aim of the present study was to test whether DNA barcoding is a useful tool to identify freshwater fishes in the South African ...

  14. A comparison of DNA barcode clustering methods applied to ...

    Indian Academy of Sciences (India)

    2012-10-15

    Oct 15, 2012 ... ABGD; biodiversity inventory; cluster analysis; cryptic species; cytochrome oxidase subunit I; DNA barcode of life; Fuzzy. Identification; GMYC; SAP .... set of phylogenetic trees is sampled using Bayesian Markov chain Monte Carlo ..... Critical factors for assembling a high volume of DNA barcodes. Philos.

  15. International Barcode of Life Project : Engaging Developing Nations ...

    International Development Research Centre (IDRC) Digital Library (Canada)

    Barcoding has numerous potential applications in, for example, resources conservation, disease prevention, detection of invasive species, water quality control, monitoring disease vectors, identification of illegally traded plants or animals, and the elimination of weed seeds in seed collections. To date, most of the barcoding ...

  16. USE OF A LASER SCANNING SYSTEM FOR PROFESSIONAL PREPARATION AND SCENE ASSESSMENT OF FIRE RESCUE UNITS

    Directory of Open Access Journals (Sweden)

    Zdeněk MAREK

    2017-06-01

    Full Text Available The paper presents results of a study focused on usability of a 3D laser scanning system by fire rescue units during emergencies, respectively during preparations for inspection and tactical exercises. The first part of the study focuses on an applicability of a 3D scanner in relation to an accurate evaluation of a fire scene through digitization and creation of virtual walk-through of the fire scene. The second part deals with detailed documentation of access road to the place of intervention, including a simulation of the fire vehicle arrival.

  17. Operational results for the raster scanning power supply system constructed at the Bevalac Biomedical Facility

    International Nuclear Information System (INIS)

    Stover, G.; Halliwell, J.; Nyman, M.; Dwinell, R.

    1989-03-01

    A raster scanning power supply for controlling an 8.0 Tesla-meter relativistic heavy-ion beam at the Biomedical Facility has been recently completed and is undergoing electrical testing before on- line operation in 1989. The scanner system will provide tightly controlled beam uniformity and off-axis treatment profiles with large aspect ratios and unusual dimensions. This article will discuss original specifications, agreement with measured results and special device performance (i.e. GTOs, FET actuator assembly, etc.). 5 refs., 4 figs

  18. The Scanning TMR Microscope for Biosensor Applications

    Directory of Open Access Journals (Sweden)

    Kunal N. Vyas

    2015-04-01

    Full Text Available We present a novel tunnel magnetoresistance (TMR scanning microscopeset-up capable of quantitatively imaging the magnetic stray field patterns of micron-sizedelements in 3D. By incorporating an Anderson loop measurement circuit for impedancematching, we are able to detect magnetoresistance changes of as little as 0.006%/Oe. By 3Drastering a mounted TMR sensor over our magnetic barcodes, we are able to characterisethe complex domain structures by displaying the real component, the amplitude and thephase of the sensor’s impedance. The modular design, incorporating a TMR sensor withan optical microscope, renders this set-up a versatile platform for studying and imagingimmobilised magnetic carriers and barcodes currently employed in biosensor platforms,magnetotactic bacteria and other complex magnetic domain structures of micron-sizedentities. The quantitative nature of the instrument and its ability to produce vector maps ofmagnetic stray fields has the potential to provide significant advantages over other commonlyused scanning magnetometry techniques.

  19. Three-dimensional facial anthropometry of unilateral cleft lip infants with a structured light scanning system.

    Science.gov (United States)

    Li, Guanghui; Wei, Jianhua; Wang, Xi; Wu, Guofeng; Ma, Dandan; Wang, Bo; Liu, Yanpu; Feng, Xinghua

    2013-08-01

    Cleft lip in the presence or absence of a cleft palate is a major public health problem. However, few studies have been published concerning the soft-tissue morphology of cleft lip infants. Currently, obtaining reliable three-dimensional (3D) surface models of infants remains a challenge. The aim of this study was to investigate a new way of capturing 3D images of cleft lip infants using a structured light scanning system. In addition, the accuracy and precision of the acquired facial 3D data were validated and compared with direct measurements. Ten unilateral cleft lip patients were enrolled in the study. Briefly, 3D facial images of the patients were acquired using a 3D scanner device before and after the surgery. Fourteen items were measured by direct anthropometry and 3D image software. The accuracy and precision of the 3D system were assessed by comparative analysis. The anthropometric data obtained using the 3D method were in agreement with the direct anthropometry measurements. All data calculated by the software were 'highly reliable' or 'reliable', as defined in the literature. The localisation of four landmarks was not consistent in repeated experiments of inter-observer reliability in preoperative images (P0.05). The structured light scanning system is proven to be a non-invasive, accurate and precise method in cleft lip anthropometry. Copyright © 2013 British Association of Plastic, Reconstructive and Aesthetic Surgeons. Published by Elsevier Ltd. All rights reserved.

  20. 3D SCANNING OF LIVE PIGS SYSTEM AND ITS APPLICATION IN BODY MEASUREMENTS

    Directory of Open Access Journals (Sweden)

    H. Guo

    2017-09-01

    Full Text Available The shape of a live pig is an important indicator of its health and value, whether for breeding or for carcass quality. This paper implements a prototype system for live single pig body surface 3d scanning based on two consumer depth cameras, utilizing the 3d point clouds data. These cameras are calibrated in advance to have a common coordinate system. The live 3D point clouds stream of moving single pig is obtained by two Xtion Pro Live sensors from different viewpoints simultaneously. A novel detection method is proposed and applied to automatically detect the frames containing pigs with the correct posture from the point clouds stream, according to the geometric characteristics of pig’s shape. The proposed method is incorporated in a hybrid scheme, that serves as the preprocessing step in a body measurements framework for pigs. Experimental results show the portability of our scanning system and effectiveness of our detection method. Furthermore, an updated this point cloud preprocessing software for livestock body measurements can be downloaded freely from https://github.com/LiveStockShapeAnalysis to livestock industry, research community and can be used for monitoring livestock growth status.

  1. D Scanning of Live Pigs System and its Application in Body Measurements

    Science.gov (United States)

    Guo, H.; Wang, K.; Su, W.; Zhu, D. H.; Liu, W. L.; Xing, Ch.; Chen, Z. R.

    2017-09-01

    The shape of a live pig is an important indicator of its health and value, whether for breeding or for carcass quality. This paper implements a prototype system for live single pig body surface 3d scanning based on two consumer depth cameras, utilizing the 3d point clouds data. These cameras are calibrated in advance to have a common coordinate system. The live 3D point clouds stream of moving single pig is obtained by two Xtion Pro Live sensors from different viewpoints simultaneously. A novel detection method is proposed and applied to automatically detect the frames containing pigs with the correct posture from the point clouds stream, according to the geometric characteristics of pig's shape. The proposed method is incorporated in a hybrid scheme, that serves as the preprocessing step in a body measurements framework for pigs. Experimental results show the portability of our scanning system and effectiveness of our detection method. Furthermore, an updated this point cloud preprocessing software for livestock body measurements can be downloaded freely from https://github.com/LiveStockShapeAnalysis to livestock industry, research community and can be used for monitoring livestock growth status.

  2. A real-time 3D scanning system for pavement distortion inspection

    International Nuclear Information System (INIS)

    Li, Qingguang; Yao, Ming; Yao, Xun; Xu, Bugao

    2010-01-01

    Pavement distortions, such as rutting and shoving, are the common pavement distress problems that need to be inspected and repaired in a timely manner to ensure ride quality and traffic safety. This paper introduces a real-time, low-cost inspection system devoted to detecting these distress features using high-speed 3D transverse scanning techniques. The detection principle is the dynamic generation and characterization of the 3D pavement profile based on structured light triangulation. To improve the accuracy of the system, a multi-view coplanar scheme is employed in the calibration procedure so that more feature points can be used and distributed across the field of view of the camera. A sub-pixel line extraction method is applied for the laser stripe location, which includes filtering, edge detection and spline interpolation. The pavement transverse profile is then generated from the laser stripe curve and approximated by line segments. The second-order derivatives of the segment endpoints are used to identify the feature points of possible distortions. The system can output the real-time measurements and 3D visualization of rutting and shoving distress in a scanned pavement

  3. LIDAR AND INS FUSION IN PERIODS OF GPS OUTAGES FOR MOBILE LASER SCANNING MAPPING SYSTEMS

    Directory of Open Access Journals (Sweden)

    I. Klein

    2012-09-01

    Full Text Available Mobile laser scanning systems are becoming an increasingly popular means to obtain 3D coverage on a large scale. To perform the mapping, the exact position of the vehicle must be known throughout the trajectory. Exact position is achieved via integration of Global Positioning Systems (GPS and Inertial Navigation Systems (INS. Yet, in urban environments, cases of complete or even partial GPS outages may occur leaving the navigation solution to rely only on the INS. The INS navigation solution degrades with time as the Inertial Measurement Unit (IMU measurements contains noise, which permeates into the navigation equations. Degradation of the position determination leads to loss of data in such segments. To circumvent such drift and its effects, we propose fusing INS with lidar data by using building edges. This detection of edges is then translated into position data, which is used as an aiding to the INS. It thereby enables the determination of the vehicle position with a satisfactory level accuracy, sufficient to perform the laser-scanning based mapping in those outage periods.

  4. Nano-pulsed laser irradiation scanning system for phase-change materials

    International Nuclear Information System (INIS)

    Kim, Sookyung; Li Xuezhe; Lee, Sangbin; Kim, Kyung-Ho; Lee, Seung-Yop

    2008-01-01

    Recently, the demand of a laser irradiation tester is increasing for phase change random access memory (PRAM) as well as conventional optical storage media. In this study, a nano-pulsed laser irradiation system is developed to characterize the optical property and writing performance of phase-change materials, based on a commercially available digital versatile disk (DVD) optical pick-up. The precisely controlled focusing and scanning on the material's surface are implemented using the auto-focusing mechanism and a voice coil motor (VCM) of the commercial DVD pick-up. The laser irradiation system provides various writing and reading functions such as adjustable laser power, pulse duration, recording pattern (spot, line and area), and writing/reading repetition, phase transition, and in situ reflectivity measurement before/after irradiation. Measurements of power time effect (PTE) diagram and reflectivity map of Ge 2 Sb 2 Te 5 samples show that the proposed laser irradiation system provides the powerful scanning tool to quantify the optical characteristics of phase-change materials

  5. The effectiveness of the jammer signal characteristics on conical-scan systems

    Science.gov (United States)

    Şahingil, Mehmet C.; Aslan, Murat Ş.

    2015-05-01

    Being passive systems and due to their proliferation to many regions in the world, the infrared (IR) guided missiles constitute probably the most dangerous threats for the aircraft platforms. Early generation surface-to-air and air-to-air IRguided missiles use reticle-based seekers. One of the IR countermeasure (IRCM) techniques for protecting aircraft platforms against these type of threats is to use a modulated jamming signal. Optimizing the parameters of the modulation is the most important issue for an effective protection. If the required characteristic is not satisfied, jamming may not be successful for protecting the aircraft. There are several parameters to define the jammer signal (modulation) characteristic. Optimizing them requires a good understanding of threat seekers' operating principles. In the present paper, we consider protection of a helicopter platform against conical-scan reticle based seeker systems and investigate the effect of the jammer signal modulation parameters on jamming performance via extensive batch simulations. The simulations are performed in a MATLAB-coded simulator which models reticle-based conical-scan seeker, aircraft radiation, aircraft motion and jammer system on the aircraft. The results show that if the properties of the jammer signal are similar to those of the reticle-modulated signal in the missile, the jamming can be successful. Otherwise, applied jamming may not deceive the threat seeker.

  6. [Molecular identification in genus of Lilium based on DNA barcoding].

    Science.gov (United States)

    Zheng, Si-Hao; Li, Ya-Kang; Ren, Wei-Guang; Huang, Lin-Fang

    2014-12-01

    To establish a new method for identifying genus of Lilium by DNA barcoding technology, ITS, ITS2, psbA-trnH, matK and rbcL sequences were analyzed in term of variation of inter- and intra-species, barcoding gap, neighbor-joining tree to distinguish genus of Lilium based on 978 sequences from experimental and GenBank database, and identification efficiency was evaluated by Nearest distance and BLAST1 methods. The results showed that DNA barcoding could identify different species in genus of Lilium. ITS sequence performed higher identification efficiency, and had significant difference between intra- and inter-species. And NJ tree could also divide species into different clades. Results indicate that DNA barcoding can identify genus of Lilium accurately. ITS sequence can be the optimal barcode to identify species of Lilium.

  7. Identifying Chinese species of Gammarus (Crustacea: Amphipoda using DNA barcoding

    Directory of Open Access Journals (Sweden)

    HOU Zhong-E

    2009-04-01

    Full Text Available Using a standard cytochrome c oxidase I sequence, DNA barcoding has been shown to be effective to distinguish known species and to discover cryptic species. Here we assessed the efficiency of DNA barcoding for the amphipod genus Gammarus from China. The maximum intraspecific divergence for widespread species, Gammarus lacustris, was 3.5%, and mean interspecific divergence reached 21.9%. We presented a conservative benchmark for determining provisional species using maximum intraspecific divergence of Gammarus lacustris. Thirty-one species possessed distinct barcode clusters. Two species were comprised of highly divergent clades with strong neighbor-joining bootstrap values, and likely indicated the presence of cryptic species. Although DNA barcoding is effective, future identification of species of Gammarus should incorporate DNA barcoding and morphological detection.

  8. [Hydrophidae identification through analysis on Cyt b gene barcode].

    Science.gov (United States)

    Liao, Li-xi; Zeng, Ke-wu; Tu, Peng-fei

    2015-08-01

    Hydrophidae, one of the precious traditional Chinese medicines, is generally drily preserved to prevent corruption, but it is hard to identify the species of Hydrophidae through the appearance because of the change due to the drying process. The identification through analysis on gene barcode, a new technique in species identification, can avoid the problem. The gene barcodes of the 6 species of Hydrophidae like Lapemis hardwickii were aquired through DNA extraction and gene sequencing. These barcodes were then in sequence alignment and test the identification efficency by BLAST. Our results revealed that the barcode sequences performed high identification efficiency, and had obvious difference between intra- and inter-species. These all indicated that Cyt b DNA barcoding can confirm the Hydrophidae identification.

  9. Scanning Electron Microscope Mapping System Developed for Detecting Surface Defects in Fatigue Specimens

    Science.gov (United States)

    Bonacuse, Peter J.; Kantzos, Peter T.

    2002-01-01

    An automated two-degree-of-freedom specimen positioning stage has been developed at the NASA Glenn Research Center to map and monitor defects in fatigue specimens. This system expedites the examination of the entire gauge section of fatigue specimens so that defects can be found using scanning electron microscopy (SEM). Translation and rotation stages are driven by microprocessor-based controllers that are, in turn, interfaced to a computer running custom-designed software. This system is currently being used to find and record the location of ceramic inclusions in powder metallurgy materials. The mapped inclusions are periodically examined during interrupted fatigue experiments. The number of cycles to initiate cracks from these inclusions and the rate of growth of initiated cracks can then be quantified. This information is necessary to quantify the effect of this type of defect on the durability of powder metallurgy materials. This system was developed with support of the Ultra Safe program.

  10. A flexible LabVIEWTM-based data acquisition and analysis system for scanning microscopy

    International Nuclear Information System (INIS)

    Morse, Daniel H.; Antolak, Arlyn J.; Bench, Graham S.; Roberts, Mark L.

    1999-01-01

    A new data analysis system has been developed with computer-controlled beam and sample positioning, video sample imaging, multiple large solid angle detectors for X-rays and gamma-rays, and surface barrier detectors for charged particles. The system uses the LabVIEW TM programming language allowing it to be easily ported between different computer operating systems. In the present configuration, digital signal processors are directly interfaced to a SCSI CAMAC controller. However, the modular software design permits the substitution of other hardware with LabVIEW-supported drivers. On-line displays of histogram and two-dimensional elemental map images provide a user-friendly data acquisition interface. Subregions of the two-dimensional maps may be selected interactively for detailed analysis or for subsequent scanning. Off-line data processing of archived data currently yields elemental maps, analyzed spectra and reconstructions of tomographic data

  11. A flexible LabVIEW™-based data acquisition and analysis system for scanning microscopy

    Science.gov (United States)

    Morse, Daniel H.; Antolak, Arlyn J.; Bench, Graham S.; Roberts, Mark L.

    1999-10-01

    A new data analysis system has been developed with computer-controlled beam and sample positioning, video sample imaging, multiple large solid angle detectors for X-rays and gamma-rays, and surface barrier detectors for charged particles. The system uses the LabVIEW™ programming language allowing it to be easily ported between different computer operating systems. In the present configuration, digital signal processors are directly interfaced to a SCSI CAMAC controller. However, the modular software design permits the substitution of other hardware with LabVIEW-supported drivers. On-line displays of histogram and two-dimensional elemental map images provide a user-friendly data acquisition interface. Subregions of the two-dimensional maps may be selected interactively for detailed analysis or for subsequent scanning. Off-line data processing of archived data currently yields elemental maps, analyzed spectra and reconstructions of tomographic data.

  12. A flexible Labviewtrademark-based data acquisition and analysis system for scanning microscopy

    International Nuclear Information System (INIS)

    Morse, Daniel H.; Antolak, Arlyn J.; Bench, Graham S.; Roberts, Mark L.

    1998-01-01

    A new data analysis system has been developed with computer-controlled beam and sample positioning, video sample imaging, multiple large solid angle detectors for x-rays and gamma-rays, and surface barrier detectors for charged particles. The system uses the LabVIEWtrademark programming language allowing it to be easily ported between different computer operating systems. In the present configuration, digital signal processors are directly interfaced to a SCSI CAMAC controller. However, the modular software design permits the substitution of other hardware with LabVIEW-supported drivers. On-line displays of histogram and two-dimensional elemental map images provide a user-friendly data acquisition interface. Subregions of the two-dimensional maps may be selected interactively for detailed analysis or for subsequent scanning. Off-line data processing of archived data currently yields elemental maps, analyzed spectra and reconstructions of tomographic data

  13. SU-F-T-213: Commissioning Results of the Prototype Active Scanning Irradiation System of Korea Heavy Ion Medical Accelerator

    Energy Technology Data Exchange (ETDEWEB)

    Kim, C; Seduk, J; Yang, T [Korea Institute of Radiological And Medical Sciences, Seoul, Seoul (Korea, Republic of)

    2016-06-15

    Purpose: A prototype actives scanning beam delivery system was designed, manufactured and installed as a part of the Korea Heavy Ion Medical Accelerator Project. The prototype system includes the most components for steering, modulating, detecting incident beam to patient. The system was installed in MC-50 cyclotron beam line and tested to extract the normal operation conditions. Methods: The commissioning process was completed by using 45 MeV of proton beam. To measure the beam position accuracy along the scanning magnet power supply current, 25 different spots were scanning and measured. The scanning results on GaF film were compared with the irradiation plan. Also, the beam size variation and the intensity reduction using range shifter were measured and analyzed. The results will be used for creating a conversion factors for asymmetric behavior of scanning magnets and a dose compensation factor for longitudinal direction. Results: The results show asymmetry operations on both scanning × and y magnet. In case of scanning magnet × operation, the current to position conversion factors were measured 1.69 mm/A for positive direction and 1.74 mm/A for negative direction. The scanning magnet y operation shows 1.38mm/A and 1.48 mm/A for both directions. The size of incoming beam which was 18 mm as sigma becomes larger up to 55 mm as sigma while using 10 mm of the range shifter plate. As the beam size becomes large, the maximum intensity of the was decreased. In case of using 10 mm of range shifter, the maximum intensity was only 52% compared with no range shifter insertion. Conclusion: For the appropriate operation of the prototype active scanning system, the commissioning process were performed to measure the beam characteristics variation. The obtained results would be applied on the irradiation planning software for more precise dose delivery using the active scanning system.

  14. SU-F-T-213: Commissioning Results of the Prototype Active Scanning Irradiation System of Korea Heavy Ion Medical Accelerator

    International Nuclear Information System (INIS)

    Kim, C; Seduk, J; Yang, T

    2016-01-01

    Purpose: A prototype actives scanning beam delivery system was designed, manufactured and installed as a part of the Korea Heavy Ion Medical Accelerator Project. The prototype system includes the most components for steering, modulating, detecting incident beam to patient. The system was installed in MC-50 cyclotron beam line and tested to extract the normal operation conditions. Methods: The commissioning process was completed by using 45 MeV of proton beam. To measure the beam position accuracy along the scanning magnet power supply current, 25 different spots were scanning and measured. The scanning results on GaF film were compared with the irradiation plan. Also, the beam size variation and the intensity reduction using range shifter were measured and analyzed. The results will be used for creating a conversion factors for asymmetric behavior of scanning magnets and a dose compensation factor for longitudinal direction. Results: The results show asymmetry operations on both scanning × and y magnet. In case of scanning magnet × operation, the current to position conversion factors were measured 1.69 mm/A for positive direction and 1.74 mm/A for negative direction. The scanning magnet y operation shows 1.38mm/A and 1.48 mm/A for both directions. The size of incoming beam which was 18 mm as sigma becomes larger up to 55 mm as sigma while using 10 mm of the range shifter plate. As the beam size becomes large, the maximum intensity of the was decreased. In case of using 10 mm of range shifter, the maximum intensity was only 52% compared with no range shifter insertion. Conclusion: For the appropriate operation of the prototype active scanning system, the commissioning process were performed to measure the beam characteristics variation. The obtained results would be applied on the irradiation planning software for more precise dose delivery using the active scanning system.

  15. A high-resolution scanning pencil-beam scatterometer: system design challenges

    Science.gov (United States)

    Chakraborty, Prantik; Gupta, Priyanka; Misra, Tapan

    2016-05-01

    The scanning pencil-beam Scatterometer configuration is pretty effective in covering a large ground-swath by rotating a moderately sized paraboloid dish at a moderate speed. For example, Oscat (Oceansat-II Scatterometer) did cover a ground-swath of 1550km using a 1m diameter reflector that was rotated at 20.5 rpm. The decade-long service (1999-2009) provided by the Seawinds instrument onboard the Quikscat mission followed by an almost half-a-decade (2009-2014) service of Oscat has made this configuration tremendously popular with the global user community. A major drawback of conventional pencil-beam systems like Seawinds and Oscat is the relatively poor spatial resolution. The ground-resolution is beamwidth-limited azimuthally while, in elevation, the resolution is improved by engaging pulse-compression and range-binning. Oscat's Instantaneous Field of View (IFOV) was 25km wide in azimuth (az) and 50km in elevation (el) at 49° incidence angle. The range-compressed resolution bins had dimensions of 6km (el) x 25km (az). Therefore, qualified wind products could be generated upon square grids no finer than 25km x 25km resolution. According to recommendations of International Ocean Vector Wind Science Team (IOVWST) and Oscat user community, high-resolution scatterometry is the requirement of the day with wind-vector cell-size dimension of 5km or better. One way to improve the resolution is to adopt the SAR principle of Range-Doppler discrimination in the scanning pencil-beam configuration. The footprint can be resolved simultaneously in range as well as in azimuth, thus significantly improving the size of the combined Range-Doppler resolution bin ( 1km). However, the addition of Doppler filtering to conically scanning radar brings with it its own disadvantages e.g. the limitations of dwell time and the constant change in orientation of isodop lines. This paper presents the constraints in system design of high-resolution scanning systems, the design trade-offs, the

  16. APPLICATION OF 3D DIGITAL SCANNING AND CAD/CAM SYSTEMS FOR ZIRCONIA INDIRECT RESTORATIONS

    Directory of Open Access Journals (Sweden)

    Mariela Tsanova

    2016-09-01

    Full Text Available Object: To study the CAD/CAM systems’ possibilities for manufacturing Zirconia indirect restorations for restoring vital, vastly devastated teeth. Material and methods: Five patients with vital, heavily destroyed molars were included in the clinical study. The teeth were prepared according to requirements for Zirconia restorations. The impressions were taken with 3D intraoral scanner. The acquired data is transmitted electronically for designing the future restoration by the CAD software. After designing, the restoration is milled by the CAM module and sintered, according to a specially projected programme in accordance with the manufacturing demands. After clinical check-up, the restorations are glazed, air-blasted and cemented. Results: Setting up an individual protocol for working with CAD/CAM systems for restoring vital, severely devastated teeth with Zirconia indirect restorations. A research is made on 3D digital scanning, occlusal and proximal modeling, virtual articulation, analyzing the incline of the cavity walls, the thickness of the restoration and the possibilities for restoring the anatomy of the tooth according to patient’s individual characteristics of the teeth’s arch. Conclusion: The scanning and design process should be evaluated with the same quality control as when using traditional methods. The CAD software requires excellent preparation of the tooth cavity and digital scanning. This is the reason why these systems require a thorough understanding of CAD/CAM calibration and parameters of the product to be clinically acceptable. Once understood, CAD/CAM dentistry can create detailed and accurate restorations that function and perform with great success and longevity.

  17. DNA Barcoding for Identification of "Candidatus Phytoplasmas" Using a Fragment of the Elongation Factor Tu Gene

    DEFF Research Database (Denmark)

    Makarova, Olga; Contaldo, Nicoletta; Paltrinieri, Samanta

    2012-01-01

    barcoding gap. The use of the tuf barcode allowed separation of main ribosomal groups and most of their subgroups. Phytoplasma tuf barcodes were deposited in the NCBI GenBank and Q-bank databases. Conclusions/Significance This study demonstrates that DNA barcoding principles can be applied...... by plant health services and researchers for online phytoplasma identification....

  18. Novel DNA barcodes for detection, idenfication and tracking of stachybotrys and chaetomium species

    DEFF Research Database (Denmark)

    Lewinska, Anna Malgorzata; Hoof, Jakob Blæsbjerg; Peuhkuri, Ruut Hannele

    2014-01-01

    and Stachybotrys. The existing DNA barcodes: ITS, SSU, LSU, B-TUB, CMD, RP and TEF-1α do not give satisfying species resolution to be considered as DNA barcodes for the two genera. Therefore, novel barcodes for them are needed. Barcode potentials, such as HOG1 a NAHA, were identified using bioinformatics...

  19. Identifying Fishes through DNA Barcodes and Microarrays.

    Science.gov (United States)

    Kochzius, Marc; Seidel, Christian; Antoniou, Aglaia; Botla, Sandeep Kumar; Campo, Daniel; Cariani, Alessia; Vazquez, Eva Garcia; Hauschild, Janet; Hervet, Caroline; Hjörleifsdottir, Sigridur; Hreggvidsson, Gudmundur; Kappel, Kristina; Landi, Monica; Magoulas, Antonios; Marteinsson, Viggo; Nölte, Manfred; Planes, Serge; Tinti, Fausto; Turan, Cemal; Venugopal, Moleyur N; Weber, Hannes; Blohm, Dietmar

    2010-09-07

    International fish trade reached an import value of 62.8 billion Euro in 2006, of which 44.6% are covered by the European Union. Species identification is a key problem throughout the life cycle of fishes: from eggs and larvae to adults in fisheries research and control, as well as processed fish products in consumer protection. This study aims to evaluate the applicability of the three mitochondrial genes 16S rRNA (16S), cytochrome b (cyt b), and cytochrome oxidase subunit I (COI) for the identification of 50 European marine fish species by combining techniques of "DNA barcoding" and microarrays. In a DNA barcoding approach, neighbour Joining (NJ) phylogenetic trees of 369 16S, 212 cyt b, and 447 COI sequences indicated that cyt b and COI are suitable for unambiguous identification, whereas 16S failed to discriminate closely related flatfish and gurnard species. In course of probe design for DNA microarray development, each of the markers yielded a high number of potentially species-specific probes in silico, although many of them were rejected based on microarray hybridisation experiments. None of the markers provided probes to discriminate the sibling flatfish and gurnard species. However, since 16S-probes were less negatively influenced by the "position of label" effect and showed the lowest rejection rate and the highest mean signal intensity, 16S is more suitable for DNA microarray probe design than cty b and COI. The large portion of rejected COI-probes after hybridisation experiments (>90%) renders the DNA barcoding marker as rather unsuitable for this high-throughput technology. Based on these data, a DNA microarray containing 64 functional oligonucleotide probes for the identification of 30 out of the 50 fish species investigated was developed. It represents the next step towards an automated and easy-to-handle method to identify fish, ichthyoplankton, and fish products.

  20. Identifying Fishes through DNA Barcodes and Microarrays.

    Directory of Open Access Journals (Sweden)

    Marc Kochzius

    Full Text Available BACKGROUND: International fish trade reached an import value of 62.8 billion Euro in 2006, of which 44.6% are covered by the European Union. Species identification is a key problem throughout the life cycle of fishes: from eggs and larvae to adults in fisheries research and control, as well as processed fish products in consumer protection. METHODOLOGY/PRINCIPAL FINDINGS: This study aims to evaluate the applicability of the three mitochondrial genes 16S rRNA (16S, cytochrome b (cyt b, and cytochrome oxidase subunit I (COI for the identification of 50 European marine fish species by combining techniques of "DNA barcoding" and microarrays. In a DNA barcoding approach, neighbour Joining (NJ phylogenetic trees of 369 16S, 212 cyt b, and 447 COI sequences indicated that cyt b and COI are suitable for unambiguous identification, whereas 16S failed to discriminate closely related flatfish and gurnard species. In course of probe design for DNA microarray development, each of the markers yielded a high number of potentially species-specific probes in silico, although many of them were rejected based on microarray hybridisation experiments. None of the markers provided probes to discriminate the sibling flatfish and gurnard species. However, since 16S-probes were less negatively influenced by the "position of label" effect and showed the lowest rejection rate and the highest mean signal intensity, 16S is more suitable for DNA microarray probe design than cty b and COI. The large portion of rejected COI-probes after hybridisation experiments (>90% renders the DNA barcoding marker as rather unsuitable for this high-throughput technology. CONCLUSIONS/SIGNIFICANCE: Based on these data, a DNA microarray containing 64 functional oligonucleotide probes for the identification of 30 out of the 50 fish species investigated was developed. It represents the next step towards an automated and easy-to-handle method to identify fish, ichthyoplankton, and fish products.

  1. System to measure contrast-sensitivity function with a scanning-laser ophthalmoscope

    Science.gov (United States)

    Frambach, Donald A.; Sebag, Jerry; Lawton, Terry; Sadun, Alfredo

    1994-06-01

    A scanning laser ophthalmoscope (SLO) employs an extremely low power laser that is focused to a 10 micron spot on the human retina and scanned across the retina at the same rate and pattern that an electron beam travels across a television screen. An image is acquired by measuring the retina's reflectance along each raster. An acousto-optic modulator, in the path of the laser beam, can be used to write targets directly onto the retina. since the SLO can project targets onto the retina while simultaneously viewing the retina, retinal function at specific locations can be unambiguously assessed. We developed software so that sine wave contrast sensitivity gratings were projected onto subjects' retinas with contrasts ranging from 0 to 63.5%. Subjects determined whether the gratings tilted 45 degree(s) to the right or 45 degree(s) to the left. A staircase protocol using 6 reversals was employed to determine contrast sensitivity at each spatial frequency. In early work with the system, 16 eyes of 11 normal subjects were tested. For 8 eyes the intraclass correlation coefficient of reliability was 0.85. This system yields reproducible measures of contrast sensitivity. It may have advantages over other methods to measure contrast sensitivity because the location of tested retina can be unambiguously assessed and illumination levels from the instrument directly measured and controlled. In addition, the small entrance pupil of the SLO can reduce the effects of cataracts measurements of contrast sensitivity.

  2. Digital biomagnetism: Electrodeposited multilayer magnetic barcodes

    Energy Technology Data Exchange (ETDEWEB)

    Palfreyman, Justin J. [Cavendish Laboratory, Department of Physics, University of Cambridge, Cambridge, CB3 0HE (United Kingdom)], E-mail: jjp38@cam.ac.uk; Cooper, Joshaniel F.K.; Belle, Frieda van; Hong Bingyan; Hayward, Tom J. [Cavendish Laboratory, Department of Physics, University of Cambridge, Cambridge, CB3 0HE (United Kingdom); Lopalco, Maria; Bradley, Mark [School of Chemistry, University of Edinburgh, King' s Buildings, Edinburgh, EH9 3JJ (United Kingdom); Mitrelias, Thanos; Bland, J. Anthony C. [Cavendish Laboratory, Department of Physics, University of Cambridge, Cambridge, CB3 0HE (United Kingdom)

    2009-05-15

    A novel magnetic encoding technique for performing high-throughput biological assays is presented. Electrodeposited Ni/Cu and Co/Cu multilayer pillar structures with a diameter of 15 {mu}m and a thickness up to 10 {mu}m are presented as 'magnetic barcodes', where the number of unique codes possible increases exponentially with a linear increase in length. A gold cap facilitates the growth of self-assembled monolayers (SAMs), while microdrop printing allows efficient generation of large libraries of tagged probes. Coercivity-tuning techniques are used to exploit a non-proximity encoding methodology compatible with microfluidic flow.

  3. Clinical assessment of a commercial delivery system for aerosol ventilation scanning by comparison with Krypton-81m

    International Nuclear Information System (INIS)

    Wollmer, P.; Eriksson, L.; Andersson, A.

    1985-01-01

    A commercial aerosol delivery system for ventilation scanning was evaluated in 23 patients with lung disease involving regional disturbances of ventilation. Ventilation scans obtained after inhalation of an aerosol labeled with In-113m were compared with Kr-81m ventilation scans. An indirect comparison was also made with a settling bag technique. There was close agreement between the aerosol and the Kr-81m ventilation scans in all of the patients. The aerosol outlined the ventilated parts of the lung adequately, and central deposition of particles was minimal. The penetration of the aerosol into the lung was higher with the delivery system that with a settling bag system. The aerosol delivery system appears suitable for clinical pulmonary ventilation scintigraphy

  4. Extended investigation into continuous laser scanning of underground mine workings by means of Landis inertial navigation system

    Science.gov (United States)

    Belyaev, E. N.

    2017-10-01

    The paper investigates the method of applying mobile scanning systems (MSSs) with inertial navigators in the underground conditions for carrying out the surveying tasks. The available mobile laser scanning systems cannot be used in the underground environment since Global Positioning System (GPS) signals cannot be received in mines. This signal not only is necessary for space positioning, but also operates as the main corrective signal for the primary navigation system - the inertial navigation system. The idea of the method described in this paper consists in using MSSs with a different correction of the inertial system than GPS is.

  5. Single-mirror beam steering system: analysis and synthesis of high-order conic-section scan patterns

    Science.gov (United States)

    Li, Yajun

    2008-01-01

    The vector approach introduced in an early paper for modeling mirror-scanning devices [Y. Li, Appl. Opt. 34, 6417 (1995)] provides the basis of a rigorous study of the scan field generated by a single-mirror beam steering system, in which a hinged movable mirror is able to turn about a fixed pivot point to steering a single laser beam. Because of fewer constraints on mirror angular motion, the system may behave like a true point source for both vector and raster scanning applications. After a summary of the expressions for scan fields generated under different conditions, some fundamental and advanced topics of the single-mirror system are addressed: (1) basic parameters of high-order conic-section scan patterns, (2) scanning spot kinematics, (3) effect of input offset and pixels distortions on two-dimensional images displayed on screens of different formats, (4) mapping and its inverse between the mirror vector space and the scan vector space, and (5) single-mirror beam steering system as a one-element reflective and continuous image zooming device.

  6. Multiple multilocus DNA barcodes from the plastid genome discriminate plant species equally well.

    Directory of Open Access Journals (Sweden)

    Aron J Fazekas

    Full Text Available A universal barcode system for land plants would be a valuable resource, with potential utility in fields as diverse as ecology, floristics, law enforcement and industry. However, the application of plant barcoding has been constrained by a lack of consensus regarding the most variable and technically practical DNA region(s. We compared eight candidate plant barcoding regions from the plastome and one from the mitochondrial genome for how well they discriminated the monophyly of 92 species in 32 diverse genera of land plants (N = 251 samples. The plastid markers comprise portions of five coding (rpoB, rpoC1, rbcL, matK and 23S rDNA and three non-coding (trnH-psbA, atpF-atpH, and psbK-psbI loci. Our survey included several taxonomically complex groups, and in all cases we examined multiple populations and species. The regions differed in their ability to discriminate species, and in ease of retrieval, in terms of amplification and sequencing success. Single locus resolution ranged from 7% (23S rDNA to 59% (trnH-psbA of species with well-supported monophyly. Sequence recovery rates were related primarily to amplification success (85-100% for plastid loci, with matK requiring the greatest effort to achieve reasonable recovery (88% using 10 primer pairs. Several loci (matK, psbK-psbI, trnH-psbA were problematic for generating fully bidirectional sequences. Setting aside technical issues related to amplification and sequencing, combining the more variable plastid markers provided clear benefits for resolving species, although with diminishing returns, as all combinations assessed using four to seven regions had only marginally different success rates (69-71%; values that were approached by several two- and three-region combinations. This performance plateau may indicate fundamental upper limits on the precision of species discrimination that is possible with DNA barcoding systems that include moderate numbers of plastid markers. Resolution to the

  7. Global scanning of antihistamines in the environment: Analysis of occurrence and hazards in aquatic systems.

    Science.gov (United States)

    Kristofco, Lauren A; Brooks, Bryan W

    2017-08-15

    Concentration of the global population is increasingly occurring in megacities and other developing regions, where access to medicines is increasing more rapidly than waste management systems are implemented. Because freshwater and coastal systems are influenced by wastewater effluent discharges of differential quality, exposures in aquatic systems must be considered. Here, we performed a global scanning assessment of antihistamines (AHs), a common class of medicines, in surface waters and effluents. Antihistamines were identified, literature occurrence and ecotoxicology data on AHs collated, therapeutic hazard values (THVs) calculated, and environmental exposure distributions (EEDs) of AHs compared to ecotoxicity thresholds and drug specific THVs to estimate hazards in surface waters and effluents. Literature searches of 62 different AHs in environmental matrices identified 111 unique occurrence publications of 24 specific AHs, largely from Asia-Pacific, Europe, and North America. However, the majority of surface water (63%) and effluent (85%) observations were from Europe and North America, which highlights relatively limited information from many regions, including developing countries and rapidly urbanizing areas in Africa, Latin America and Asia. Less than 10% of all observations were for estuarine or marine systems, though the majority of human populations reside close to coastal habitats. EED 5 th and 95 th centiles for all AHs were 2 and 212ng/L in surface water, 5 and 1308ng/L in effluent and 6 and 4287ng/L in influent, respectively. Unfortunately, global hazards and risks of AHs to non-target species remain poorly understood. However, loratadine observations in surface waters exceeded a THV without an uncertainty factor 40% of the time, indicating future research is needed to understand aquatic toxicology, hazards and risks associated with this AH. This unique global scanning study further illustrates the utility of global assessments of pharmaceuticals

  8. Tree Root System Characterization and Volume Estimation by Terrestrial Laser Scanning and Quantitative Structure Modeling

    Directory of Open Access Journals (Sweden)

    Aaron Smith

    2014-12-01

    Full Text Available The accurate characterization of three-dimensional (3D root architecture, volume, and biomass is important for a wide variety of applications in forest ecology and to better understand tree and soil stability. Technological advancements have led to increasingly more digitized and automated procedures, which have been used to more accurately and quickly describe the 3D structure of root systems. Terrestrial laser scanners (TLS have successfully been used to describe aboveground structures of individual trees and stand structure, but have only recently been applied to the 3D characterization of whole root systems. In this study, 13 recently harvested Norway spruce root systems were mechanically pulled from the soil, cleaned, and their volumes were measured by displacement. The root systems were suspended, scanned with TLS from three different angles, and the root surfaces from the co-registered point clouds were modeled with the 3D Quantitative Structure Model to determine root architecture and volume. The modeling procedure facilitated the rapid derivation of root volume, diameters, break point diameters, linear root length, cumulative percentages, and root fraction counts. The modeled root systems underestimated root system volume by 4.4%. The modeling procedure is widely applicable and easily adapted to derive other important topological and volumetric root variables.

  9. Development of a prototype pipework scanning system based upon energy dispersive X-ray diffraction (EDXRD)

    International Nuclear Information System (INIS)

    Garrity, D.J.; De Rosa, A.J.; Bradley, D.A.; Jarman, S.E.; Jenneson, P.M.; Vincent, S.M.

    2010-01-01

    A prototype pipework scanning system based upon energy dispersive X-ray diffraction (EDXRD) has been produced, for which system development and preliminary results are presented here. This apparatus has been developed from experience with 2D and 3D bench-top EDXRD systems and comprises a conventional industrial X-ray tube coupled to a bespoke design of tungsten collimators and compact CdTe detector. It is designed as a robust system, rather than delicate lab-based system, to investigate sections of stainless steel pipework for structural changes induced through quenching the steel in liquid nitrogen, and damaging effects such as chloride-induced stress corrosion cracking (SCC). Given the properties of tungsten, namely its brittle nature, a complex programme of electro-discharge machining (EDM) has been devised to precisely manufacture the collimators from a series of sintered tungsten blocks. Preliminary measurements have focused on calibrating the system using the extreme ferrite and austenite phases, meeting a pre-requisite benchmark for attempting more challenging measurements such as the austenite to martensite transformation and investigations of SCC in these sections of pipework.

  10. Development of teaching modules for geology and engineering coursework using terrestrial LiDAR scanning systems

    Science.gov (United States)

    Yarbrough, L. D.; Katzenstein, K.

    2012-12-01

    Exposing students to active and local examples of physical geologic processes is beneficial to the learning process. Students typically respond with interest to examples that use state-of-the-art technologies to investigate local or regional phenomena. For lower cognitive level of learning (e.g. knowledge, comprehension, and application), the use of "close-to-home" examples ensures that students better understand concepts. By providing these examples, the students may already have a familiarity or can easily visit the location. Furthermore, these local and regional examples help students to offer quickly other examples of similar phenomena. Investigation of these examples using normal photographic techniques, as well as a more sophisticated 3-D Light Detection And Ranging (LiDAR) (AKA Terrestrial Laser Scanning or TLS) system, allows students to gain a better understanding of the scale and the mechanics of the geologic processes and hazards. The systems are used for research, teaching and outreach efforts and depending on departmental policies can be accessible to students are various learning levels. TLS systems can yield scans at sub-centimeter resolution and contain surface reflectance of targets. These systems can serve a number of learning goals that are essential for training geoscientists and engineers. While querying the data to answer geotechnical or geomorphologic related questions, students will develop skills using large, spatial databases. The upper cognitive level of learning (e.g. analysis, synthesis, and evaluation) is also promoted by using a subset of the data and correlating the physical geologic process of stream bank erosion and rock slope failures with mathematical and computer models using the scanned data. Students use the examples and laboratory exercises to help build their engineering judgment skills with Earth materials. The students learn not only applications of math and engineering science but also the economic and social implication

  11. Permanent 3D laser scanning system for an active landslide in Gresten (Austria)

    Science.gov (United States)

    Canli, Ekrem; Höfle, Bernhard; Hämmerle, Martin; Benni, Thiebes; Glade, Thomas

    2015-04-01

    Terrestrial laser scanners (TLS) have widely been used for high spatial resolution data acquisition of topographic features and geomorphic analyses. Existing applications encompass different landslides including rockfall, translational or rotational landslides, debris flow, but also coastal cliff erosion, braided river evolution or river bank erosion. The main advantages of TLS are (a) the high spatial sampling density of XYZ-measurements (e.g. 1 point every 2-3 mm at 10 m distance), particularly in comparison with the low data density monitoring techniques such as GNSS or total stations, (b) the millimeter accuracy and precision of the range measurement to centimeter accuracy of the final DEM, and (c) the highly dense area-wide scanning that enables to look through vegetation and to measure bare ground. One of its main constraints is the temporal resolution of acquired data due to labor costs and time requirements for field campaigns. Thus, repetition measurements are generally performed only episodically. However, for an increased scientific understanding of the processes as well as for early warning purposes, we present a novel permanent 3D monitoring setup to increase the temporal resolution of TLS measurements. This accounts for different potential monitoring deliverables such as volumetric calculations, spatio-temporal movement patterns, predictions and even alerting. This system was installed at the active Salcher landslide in Gresten (Austria) that is situated in the transition zone of the Gresten Klippenbelt (Helvetic) and the Flyschzone (Penninic). The characteristic lithofacies are the Gresten Beds of Early Jurassic age that are covered by a sequence of marly and silty beds with intercalated sandy limestones. Permanent data acquisition can be implemented into our workflow with any long-range TLS system offering fully automated capturing. We utilize an Optech ILRIS-3D scanner. The time interval between two scans is currently set to 24 hours, but can be

  12. New insights on crystallization in a benchmark organic photovoltaic system by fast scanning chip calorimetry

    Science.gov (United States)

    van den Brande, Niko; van Mele, Bruno; Ediger, Mark

    Using the advanced thermal analysis technique of Fast Scanning Chip Calorimetry, which relies on thin membrane chips, a methodology was developed which allows for a true isothermal study, i.e. avoiding non-isothermal effects which may alter metastable structures, by employing scanning rates of 30000 K.s-1. Isothermally formed structures, which were not observable before, were now conserved and analyzed in the subsequent heating. This methodology was used to investigate the P3HT/PC61BM (poly(3-hexylthiophene/[6 6] phenyl C61 butyric acid methyl ester) benchmark system used in organic photovoltaics, as well as its pure components. By applying the methodology to P3HT, the bell-shaped curve of isothermal crystallization rate was constructed for a P3HT layer with a thickness of ca. 550. Surprisingly, the PC61BM acceptor is capable of crystallizing significantly below its glass transition, a type of behavior seen before for several non-polymeric organic glasses.

  13. Exploring Canadian Echinoderm Diversity through DNA Barcodes.

    Directory of Open Access Journals (Sweden)

    Kara K S Layton

    Full Text Available DNA barcoding has proven an effective tool for species identification in varied groups of marine invertebrates including crustaceans, molluscs, polychaetes and echinoderms. In this study, we further validate its utility by analyzing almost half of the 300 species of Echinodermata known from Canadian waters. COI sequences from 999 specimens were assigned to 145 BINs. In most cases, species discrimination was straightforward due to the large difference (25-fold between mean intra- (0.48% and inter- (12.0% specific divergence. Six species were flagged for further taxonomic investigation because specimens assigned to them fell into two or three discrete sequence clusters. The potential influence of larval dispersal capacity and glacial events on patterns of genetic diversity is discussed for 19 trans-oceanic species. Although additional research is needed to clarify biogeographic patterns and resolve taxonomic questions, this study represents an important step in the assembly of a DNA barcode library for all Canadian echinoderms, a valuable resource for future biosurveillance programs.

  14. Evaluation of three different rotary systems during endodontic retreatment - Analysis by scanning electron microscopy.

    Science.gov (United States)

    Vidal, Flávia-Teixeira; Nunes, Eduardo; Horta, Martinho-Campolina-Rebello; Freitas, Maria-Rita-Lopes-da Silva; Silveira, Frank-Ferreira

    2016-04-01

    Endodontic therapy is considered a series of important and interdependent steps, and failure of any of these steps may compromise the treatment outcome. This study aimed to evaluate the effectiveness of three different rotary systems in removing obturation materials during endodontic retreatment using scanning electron microscopy (SEM) analysis. Thirty-six endodontically treated teeth were selected and divided into 3 groups of 10 and 1 control group with 6 dental elements. The groups were divided according to the rotary system used for removing gutta-percha, as follows: G1: ProTaper system; G2: K3 system; G3: Mtwo system; and G4: Control group. Thereafter, the roots were split and the sections were observed under SEM, for analysis and counting of clear dentinal tubules, creating the variable "degree of dentinal tubule patency" (0: intensely clear; 1: moderately clear; 2: slightly clear; 3: completely blocked). The data were subjected to the Friedman and Kruskal-Wallis statistical tests. No differences were observed in the "degree of dentinal tubule patency" neither between the root thirds (to each evaluated group) nor between the groups (to each evaluated third). Nevertheless, when the three root thirds were grouped (providing evaluation of all root extension), the "degree of dentinal tubule patency" was lower in G1 than in G3 (pretreatment.

  15. Design and Implementation of a Mechanical Control System for the Scanning Microwave Limb Sounder

    Science.gov (United States)

    Bowden, William

    2011-01-01

    The Scanning Microwave Limb Sounder (SMLS) will use technological improvements in low noise mixers to provide precise data on the Earth's atmospheric composition with high spatial resolution. This project focuses on the design and implementation of a real time control system needed for airborne engineering tests of the SMLS. The system must coordinate the actuation of optical components using four motors with encoder readback, while collecting synchronized telemetric data from a GPS receiver and 3-axis gyrometric system. A graphical user interface for testing the control system was also designed using Python. Although the system could have been implemented with a FPGA-based setup, we chose to use a low cost processor development kit manufactured by XMOS. The XMOS architecture allows parallel execution of multiple tasks on separate threads-making it ideal for this application and is easily programmed using XC (a subset of C). The necessary communication interfaces were implemented in software, including Ethernet, with significant cost and time reduction compared to an FPGA-based approach. For these reasons, the XMOS technology is an attractive, cost effective, alternative to FPGA-based technologies for this design and similar rapid prototyping projects.

  16. Impact of Barcode Medication Administration Technology on How Nurses Spend Their Time On Clinical Care

    OpenAIRE

    Poon, Eric G; Keohane, Carol; Featherstone, Erica; Hays, Brandon; Dervan, Andrew; Woolf, Seth; Hayes, Judy; Bane, Anne; Newmark, Lisa; Gandhi, Tejal K

    2006-01-01

    In a time-motion study conducted in a hospital that recently implemented barcode medication administration (BCMA) technology, we found that the BCMA system did not increase the amount of time nurses spend on medication administration activities, and did not compromise the amount of time nurses spent on direct care of patients. Our results should allay concerns regarding the impact of BCMA on nursing workflow.

  17. Environmental barcoding reveals massive dinoflagellate diversity in marine environments.

    Directory of Open Access Journals (Sweden)

    Rowena F Stern

    2010-11-01

    Full Text Available Dinoflagellates are an ecologically important group of protists with important functions as primary producers, coral symbionts and in toxic red tides. Although widely studied, the natural diversity of dinoflagellates is not well known. DNA barcoding has been utilized successfully for many protist groups. We used this approach to systematically sample known "species", as a reference to measure the natural diversity in three marine environments.In this study, we assembled a large cytochrome c oxidase 1 (COI barcode database from 8 public algal culture collections plus 3 private collections worldwide resulting in 336 individual barcodes linked to specific cultures. We demonstrate that COI can identify to the species level in 15 dinoflagellate genera, generally in agreement with existing species names. Exceptions were found in species belonging to genera that were generally already known to be taxonomically challenging, such as Alexandrium or Symbiodinium. Using this barcode database as a baseline for cultured dinoflagellate diversity, we investigated the natural diversity in three diverse marine environments (Northeast Pacific, Northwest Atlantic, and Caribbean, including an evaluation of single-cell barcoding to identify uncultivated groups. From all three environments, the great majority of barcodes were not represented by any known cultured dinoflagellate, and we also observed an explosion in the diversity of genera that previously contained a modest number of known species, belonging to Kareniaceae. In total, 91.5% of non-identical environmental barcodes represent distinct species, but only 51 out of 603 unique environmental barcodes could be linked to cultured species using a conservative cut-off based on distances between cultured species.COI barcoding was successful in identifying species from 70% of cultured genera. When applied to environmental samples, it revealed a massive amount of natural diversity in dinoflagellates. This highlights

  18. A transcontinental challenge--a test of DNA barcode performance for 1,541 species of Canadian Noctuoidea (Lepidoptera.

    Directory of Open Access Journals (Sweden)

    Reza Zahiri

    Full Text Available This study provides a first, comprehensive, diagnostic use of DNA barcodes for the Canadian fauna of noctuoids or "owlet" moths (Lepidoptera: Noctuoidea based on vouchered records for 1,541 species (99.1% species coverage, and more than 30,000 sequences. When viewed from a Canada-wide perspective, DNA barcodes unambiguously discriminate 90% of the noctuoid species recognized through prior taxonomic study, and resolution reaches 95.6% when considered at a provincial scale. Barcode sharing is concentrated in certain lineages with 54% of the cases involving 1.8% of the genera. Deep intraspecific divergence exists in 7.7% of the species, but further studies are required to clarify whether these cases reflect an overlooked species complex or phylogeographic variation in a single species. Non-native species possess higher Nearest-Neighbour (NN distances than native taxa, whereas generalist feeders have lower NN distances than those with more specialized feeding habits. We found high concordance between taxonomic names and sequence clusters delineated by the Barcode Index Number (BIN system with 1,082 species (70% assigned to a unique BIN. The cases of discordance involve both BIN mergers and BIN splits with 38 species falling into both categories, most likely reflecting bidirectional introgression. One fifth of the species are involved in a BIN merger reflecting the presence of 158 species sharing their barcode sequence with at least one other taxon, and 189 species with low, but diagnostic COI divergence. A very few cases (13 involved species whose members fell into both categories. Most of the remaining 140 species show a split into two or three BINs per species, while Virbia ferruginosa was divided into 16. The overall results confirm that DNA barcodes are effective for the identification of Canadian noctuoids. This study also affirms that BINs are a strong proxy for species, providing a pathway for a rapid, accurate estimation of animal diversity.

  19. CT scan findings and EEG in systemic lupus erythematodes patients with neuro-psychiatric disorders

    International Nuclear Information System (INIS)

    Kan, Rumiko; Hagiwara, Mariko; Katayose, Keiko; Yashima, Yuko; Kumashiro, Hisashi

    1988-01-01

    In 14 patients with systemic lupus erythematodes presenting with neuro-psychiatric disorders, CT scans were compared with encephalographic (EEG) findings. CT findings were markedly abnormal in 6, slight with a sulcal enlargement in 3, and normal in 5. In the group of markedly abnormal CT findings, focal abnormal low density areas were detected in 2, severe generalized cerebral atrophy in one, and severe atrophy of the right hemisphere in one. EEG findings included focal paroxysmal abnormality of high voltage slow burst at the left frontal dominance and positive spike on the right hemisphere. Epileptic seizure and depressed sensorium seemed to be related to CT abnormality. In 3 patients with epileptic seizures, their symptoms were closely related to CT abnormality. Parkinsonisms and depressed sensorium were also related to CT abnormality. (Namekawa, K)

  20. Resolution enhancement of scanning four-point-probe measurements on two-dimensional systems

    DEFF Research Database (Denmark)

    Hansen, Torben Mikael; Stokbro, Kurt; Hansen, Ole

    2003-01-01

    A method to improve the resolution of four-point-probe measurements of two-dimensional (2D) and quasi-2D systems is presented. By mapping the conductance on a dense grid around a target area and postprocessing the data, the resolution can be improved by a factor of approximately 50 to better than 1....../15 of the four-point-probe electrode spacing. The real conductance sheet is simulated by a grid of discrete resistances, which is optimized by means of a standard optimization algorithm, until the simulated voltage-to-current ratios converges with the measurement. The method has been tested against simulated...... data as well as real measurements and is found to successfully deconvolute the four-point-probe measurements. In conjunction with a newly developed scanning four-point probe with electrode spacing of 1.1 µm, the method can resolve the conductivity with submicron resolution. ©2003 American Institute...

  1. Geometric validation of a mobile laser scanning system for urban applications

    Science.gov (United States)

    Guan, Haiyan; Li, Jonathan; Yu, Yongtao; Liu, Yan

    2016-03-01

    Mobile laser scanning (MLS) technologies have been actively studied and implemented over the past decade, as their application fields are rapidly expanding and extending beyond conventional topographic mapping. Trimble's MX-8, as one of the MLS systems in the current market, generates rich survey-grade laser and image data for urban surveying. The objective of this study is to evaluate whether Trimble MX-8 MLS data satisfies the accuracy requirements of urban surveying. According to the formula of geo-referencing, accuracies of navigation solution and laser scanner determines the accuracy of the collected LiDAR point clouds. Two test sites were selected to test the performance of Trimble MX-8. Those extensive tests confirm that Trimble MX-8 offers a very promising tool to survey complex urban areas.

  2. Rotating machinery vibration analysis of the rotary-laser scanning measurement system

    Science.gov (United States)

    Guo, Siyang; Ren, Yongjie; Shi, Shendong; Yang, Linghui; Lin, Jiarui

    2018-01-01

    The workshop Measurement and Positioning System (wMPS) based on the rotary-laser scanning technology has been widely applied in the manufacturing industry to provide an accurate and robust coordinate measurement. However, some vibration-related problems in the rotating machinery inevitably exist. These problems influence the measurement accuracy of wMPS and even reduce its service life. In this paper, the rotating machinery vibration analysis of wMPS is introduced. Some significant factors causing vibrations, such as the mass imbalance of the rotor, are discussed. The vibration signals of rotating machinery are captured experimentally by the three-axis accelerometer. These raw vibration signals are processed by the data pretreatment, the time-domain analysis and the frequency-domain analysis. Based on these analyses, some evaluation criteria of rotating machinery vibration are introduced. These criteria provide guidance to the fault detection and ensure the ongoing operational condition of wMPS.

  3. Effective Data-Driven Calibration for a Galvanometric Laser Scanning System Using Binocular Stereo Vision.

    Science.gov (United States)

    Tu, Junchao; Zhang, Liyan

    2018-01-12

    A new solution to the problem of galvanometric laser scanning (GLS) system calibration is presented. Under the machine learning framework, we build a single-hidden layer feedforward neural network (SLFN)to represent the GLS system, which takes the digital control signal at the drives of the GLS system as input and the space vector of the corresponding outgoing laser beam as output. The training data set is obtained with the aid of a moving mechanism and a binocular stereo system. The parameters of the SLFN are efficiently solved in a closed form by using extreme learning machine (ELM). By quantitatively analyzing the regression precision with respective to the number of hidden neurons in the SLFN, we demonstrate that the proper number of hidden neurons can be safely chosen from a broad interval to guarantee good generalization performance. Compared to the traditional model-driven calibration, the proposed calibration method does not need a complex modeling process and is more accurate and stable. As the output of the network is the space vectors of the outgoing laser beams, it costs much less training time and can provide a uniform solution to both laser projection and 3D-reconstruction, in contrast with the existing data-driven calibration method which only works for the laser triangulation problem. Calibration experiment, projection experiment and 3D reconstruction experiment are respectively conducted to test the proposed method, and good results are obtained.

  4. Effective Data-Driven Calibration for a Galvanometric Laser Scanning System Using Binocular Stereo Vision

    Directory of Open Access Journals (Sweden)

    Junchao Tu

    2018-01-01

    Full Text Available A new solution to the problem of galvanometric laser scanning (GLS system calibration is presented. Under the machine learning framework, we build a single-hidden layer feedforward neural network (SLFN)to represent the GLS system, which takes the digital control signal at the drives of the GLS system as input and the space vector of the corresponding outgoing laser beam as output. The training data set is obtained with the aid of a moving mechanism and a binocular stereo system. The parameters of the SLFN are efficiently solved in a closed form by using extreme learning machine (ELM. By quantitatively analyzing the regression precision with respective to the number of hidden neurons in the SLFN, we demonstrate that the proper number of hidden neurons can be safely chosen from a broad interval to guarantee good generalization performance. Compared to the traditional model-driven calibration, the proposed calibration method does not need a complex modeling process and is more accurate and stable. As the output of the network is the space vectors of the outgoing laser beams, it costs much less training time and can provide a uniform solution to both laser projection and 3D-reconstruction, in contrast with the existing data-driven calibration method which only works for the laser triangulation problem. Calibration experiment, projection experiment and 3D reconstruction experiment are respectively conducted to test the proposed method, and good results are obtained.

  5. LiDAR Scan Matching Aided Inertial Navigation System in GNSS-Denied Environments

    Science.gov (United States)

    Tang, Jian; Chen, Yuwei; Niu, Xiaoji; Wang, Li; Chen, Liang; Liu, Jingbin; Shi, Chuang; Hyyppä, Juha

    2015-01-01

    A new scan that matches an aided Inertial Navigation System (INS) with a low-cost LiDAR is proposed as an alternative to GNSS-based navigation systems in GNSS-degraded or -denied environments such as indoor areas, dense forests, or urban canyons. In these areas, INS-based Dead Reckoning (DR) and Simultaneous Localization and Mapping (SLAM) technologies are normally used to estimate positions as separate tools. However, there are critical implementation problems with each standalone system. The drift errors of velocity, position, and heading angles in an INS will accumulate over time, and on-line calibration is a must for sustaining positioning accuracy. SLAM performance is poor in featureless environments where the matching errors can significantly increase. Each standalone positioning method cannot offer a sustainable navigation solution with acceptable accuracy. This paper integrates two complementary technologies—INS and LiDAR SLAM—into one navigation frame with a loosely coupled Extended Kalman Filter (EKF) to use the advantages and overcome the drawbacks of each system to establish a stable long-term navigation process. Static and dynamic field tests were carried out with a self-developed Unmanned Ground Vehicle (UGV) platform—NAVIS. The results prove that the proposed approach can provide positioning accuracy at the centimetre level for long-term operations, even in a featureless indoor environment. PMID:26184206

  6. LiDAR Scan Matching Aided Inertial Navigation System in GNSS-Denied Environments.

    Science.gov (United States)

    Tang, Jian; Chen, Yuwei; Niu, Xiaoji; Wang, Li; Chen, Liang; Liu, Jingbin; Shi, Chuang; Hyyppä, Juha

    2015-07-10

    A new scan that matches an aided Inertial Navigation System (INS) with a low-cost LiDAR is proposed as an alternative to GNSS-based navigation systems in GNSS-degraded or -denied environments such as indoor areas, dense forests, or urban canyons. In these areas, INS-based Dead Reckoning (DR) and Simultaneous Localization and Mapping (SLAM) technologies are normally used to estimate positions as separate tools. However, there are critical implementation problems with each standalone system. The drift errors of velocity, position, and heading angles in an INS will accumulate over time, and on-line calibration is a must for sustaining positioning accuracy. SLAM performance is poor in featureless environments where the matching errors can significantly increase. Each standalone positioning method cannot offer a sustainable navigation solution with acceptable accuracy. This paper integrates two complementary technologies-INS and LiDAR SLAM-into one navigation frame with a loosely coupled Extended Kalman Filter (EKF) to use the advantages and overcome the drawbacks of each system to establish a stable long-term navigation process. Static and dynamic field tests were carried out with a self-developed Unmanned Ground Vehicle (UGV) platform-NAVIS. The results prove that the proposed approach can provide positioning accuracy at the centimetre level for long-term operations, even in a featureless indoor environment.

  7. Design and application of Mark IV scanning system for radionuclide computed tomography of the brain

    International Nuclear Information System (INIS)

    Kuhl, D.E.; Hoffman, E.J.; Phelps, M.E.; Ricci, A.; Reivich, M.

    1977-01-01

    The MARK IV system was built in our laboratory to provide fast and accurate radionuclide computed tomography (RCT). It is designed primarily for detecting commonly available radioactive labels such as 99 Tcsup(m), but it is also adapted to detecting positron emitters such as 18 F. The system has interlaced convergent collimation in a four-sided arrangement of 32 independent detectors which continuously rotate as a unit, detecting, processing and displaying the reconstructed data while the study progresses. During the scanning procedure, accumulated data are transferred to a digital computer for reconstruction processing. Data are corrected to equalize detector response and compensate for photon attenuation in the head. This program requires 30 seconds for completion, whereupon the final reconstruction, a 64 x 64 matrix from the single revolution, outputs to a core store and is displayed on the screen of a cathode-ray tube. As the rotation sequence continues, new data from each revolution are added to previous data and reprocessed for a new picture. Since the instrument operates at 50 s per revolution, the continuous collection and processing of data causes a new picture to appear on the display every 50 s as the study progresses. The operator may extend or curtail the duration of the examination according to the appearance of the picture. In practice, a five revolution (4.2 min.) scan is commonly used in most clinical studies. The instrument is a high sensitivity device with approximately uniform resolution (1.7 cm FWHM) throughout the section plane. Quantification of concentration of radioactivity in small regions is accurate and reproducible. The instrument has been applied to the study of alterations in cerebral vascular permeability, blood flow and blood volume, and to the study of cerebral glucose metabolism and cerebral spinal fluid distribution. (author)

  8. Review: Marine Seismic And Side-Scan Sonar Investigations For Seabed Identification With Sonar System

    Directory of Open Access Journals (Sweden)

    Muhammad Zainuddin Lubis

    2017-06-01

    Full Text Available Marine seismic reflection data have been collected for decades and since the mid-to late- 1980s much of this data is positioned relatively accurately. Marine geophysical acquisition of data is a very expensive process with the rates regularly ship through dozens of thousands of euros per day. Acquisition of seismic profiles has the position is determined by a DGPS system and navigation is performed by Hypack and Maxview software that also gives all the offsets for the equipment employed in the survey. Examples of some projects will be described in terms of the project goals and the geophysical equipment selected for each survey and specific geophysical systems according to with the scope of work. For amplitude side scan sonar image, and in the multi-frequency system, color, becoming a significant properties of the sea floor, the effect of which is a bully needs to be fixed. The main confounding effect is due to absorption of water; geometric spread; shape beam sonar function (combined transmit-receive sonar beam intensity as a function of tilt angle obtained in this sonar reference frame; sonar vehicle roll; form and function of the seabed backscatter (proportion incident on the seabed backscattered signal to sonar as a function of the angle of incidence relative to the sea floor; and the slope of the seabed. The different angles of view are generated by the translation of the sonar, because of the discrete steps involved by the sequential pings, the angular sampling of the bottom.

  9. Development of beam monitoring system for proton pencil beam scanning using fiber-optic radiation sensor

    Science.gov (United States)

    Son, Jaeman; Koo, Jihye; Moon, Sunyoung; Yoon, Myonggeun; Jeong, Jonghwi; Kim, Sun-Young; Lim, Youngkyung; Lee, Se Byeong; Shin, Dongho; Kim, Meyoung; Kim, Dongwook

    2017-10-01

    We aimed to develop a beam monitoring system based on a fiber-optic radiation sensor (FORS), which can be used in real time in a beam control room, to monitor a beam in proton therapy, where patients are treated using a pencil beam scanning (PBS) mode, by measuring the beam spot width (BSW) and beam spot position (BSP) of the PBS. We developed two-dimensional detector arrays to monitor the PBS beam in the beam control room. We measured the BSW for five energies of the PBS beam and compared the measurements with those of Lynx and EBT3 film. In order to confirm the BSP, we compared the BSP values of the PBS calculated from radiation treatment planning (RTP), to five BSP values measured using FORS at 224.2 MeV. When comparing BSW values obtained using developed monitoring system to the measurements obtained using commercial EBT3 film, the average difference in BSW value of the PBS beam was 0.1 ± 0.1 mm. In the comparison of BSW values with the measurements obtained using Lynx, the average difference was 0.2 ± 0.1 mm. When comparing BSP measurements to the values calculated from RTP, the average difference was 0.4 ± 0.2 mm. The study results confirmed that the developed FORS-based beam monitoring system can monitor a PBS beam in real time in a beam control room, where proton beam is controlled for the patient.

  10. Development of an automatic scanning system for nuclear emulsion analysis in the OPERA experiment and study of neutrino interactions location

    International Nuclear Information System (INIS)

    Arrabito, L.

    2007-10-01

    Following Super Kamiokande and K2K experiments, Opera (Oscillation Project with Emulsion tracking Apparatus), aims to confirm neutrino oscillation in the atmospheric sector. Taking advantage of a technique already employed in Chorus and in Donut, the Emulsion Cloud Chamber (ECC), Opera will be able to observe the ν μ → ν τ oscillation, through the ν τ appearance in a pure ν μ beam. The Opera experiment, with its ∼ 100000 m 2 of nuclear emulsions, needs a very fast automatic scanning system. Optical and mechanics components have been customized in order to achieve a speed of about 20 cm 2 /hour per emulsion layer (44 μm thick), while keeping a sub-micro-metric resolution. The first part of this thesis was dedicated to the optimization of 4 scanning systems at the French scanning station, based in Lyon. An experimental study on a dry objective scanning system has also been realized. The obtained results show that the performances of dry scanning are similar with respect to the traditional oil scanning, so that it can be successfully used for Opera. The second part of this work was devoted to the study of the neutrino interaction location and reconstruction strategy actually used in Opera. A dedicated test beam was performed at CERN in order to simulate Opera conditions. The obtained results definitely confirm that the proposed strategy is well adapted for tau search. (author)

  11. Prospects for fungus identification using CO1 DNA barcodes, with Penicillium as a test case.

    Science.gov (United States)

    Seifert, Keith A; Samson, Robert A; Dewaard, Jeremy R; Houbraken, Jos; Lévesque, C André; Moncalvo, Jean-Marc; Louis-Seize, Gerry; Hebert, Paul D N

    2007-03-06

    DNA barcoding systems employ a short, standardized gene region to identify species. A 648-bp segment of mitochondrial cytochrome c oxidase 1 (CO1) is the core barcode region for animals, but its utility has not been tested in fungi. This study began with an examination of patterns of sequence divergences in this gene region for 38 fungal taxa with full CO1 sequences. Because these results suggested that CO1 could be effective in species recognition, we designed primers for a 545-bp fragment of CO1 and generated sequences for multiple strains from 58 species of Penicillium subgenus Penicillium and 12 allied species. Despite the frequent literature reports of introns in fungal mitochondrial genomes, we detected introns in only 2 of 370 Penicillium strains. Representatives from 38 of 58 species formed cohesive assemblages with distinct CO1 sequences, and all cases of sequence sharing involved known species complexes. CO1 sequence divergences averaged 0.06% within species, less than for internal transcribed spacer nrDNA or beta-tubulin sequences (BenA). CO1 divergences between species averaged 5.6%, comparable to internal transcribed spacer, but less than values for BenA (14.4%). Although the latter gene delivered higher taxonomic resolution, the amplification and alignment of CO1 was simpler. The development of a barcoding system for fungi that shares a common gene target with other kingdoms would be a significant advance.

  12. Technical Note: Defining cyclotron-based clinical scanning proton machines in a FLUKA Monte Carlo system.

    Science.gov (United States)

    Fiorini, Francesca; Schreuder, Niek; Van den Heuvel, Frank

    2018-02-01

    Cyclotron-based pencil beam scanning (PBS) proton machines represent nowadays the majority and most affordable choice for proton therapy facilities, however, their representation in Monte Carlo (MC) codes is more complex than passively scattered proton system- or synchrotron-based PBS machines. This is because degraders are used to decrease the energy from the cyclotron maximum energy to the desired energy, resulting in a unique spot size, divergence, and energy spread depending on the amount of degradation. This manuscript outlines a generalized methodology to characterize a cyclotron-based PBS machine in a general-purpose MC code. The code can then be used to generate clinically relevant plans starting from commercial TPS plans. The described beam is produced at the Provision Proton Therapy Center (Knoxville, TN, USA) using a cyclotron-based IBA Proteus Plus equipment. We characterized the Provision beam in the MC FLUKA using the experimental commissioning data. The code was then validated using experimental data in water phantoms for single pencil beams and larger irregular fields. Comparisons with RayStation TPS plans are also presented. Comparisons of experimental, simulated, and planned dose depositions in water plans show that same doses are calculated by both programs inside the target areas, while penumbrae differences are found at the field edges. These differences are lower for the MC, with a γ(3%-3 mm) index never below 95%. Extensive explanations on how MC codes can be adapted to simulate cyclotron-based scanning proton machines are given with the aim of using the MC as a TPS verification tool to check and improve clinical plans. For all the tested cases, we showed that dose differences with experimental data are lower for the MC than TPS, implying that the created FLUKA beam model is better able to describe the experimental beam. © 2017 The Authors. Medical Physics published by Wiley Periodicals, Inc. on behalf of American Association of Physicists

  13. Atmospheric scanning electron microscope system with an open sample chamber: Configuration and applications

    Energy Technology Data Exchange (ETDEWEB)

    Nishiyama, Hidetoshi, E-mail: hinishiy@jeol.co.jp [JEOL Ltd., 3-1-2, Musashino, Akishima, Tokyo 196-8558 (Japan); Koizumi, Mitsuru, E-mail: koizumi@jeol.co.jp [JEOL Technics Ltd., 2-6-38 Musashino, Akishima, Tokyo 196-0021 (Japan); Ogawa, Koji, E-mail: kogawa@jeol.co.jp [JEOL Technics Ltd., 2-6-38 Musashino, Akishima, Tokyo 196-0021 (Japan); Kitamura, Shinich, E-mail: kitamura@jeol.co.jp [JEOL Ltd., 3-1-2, Musashino, Akishima, Tokyo 196-8558 (Japan); Konyuba, Yuji, E-mail: ykonyuub@jeol.co.jp [JEOL Ltd., 3-1-2, Musashino, Akishima, Tokyo 196-8558 (Japan); Watanabe, Yoshiyuki, E-mail: watanabeyoshiy@pref.yamagata.jp [Yamagata Research Institute of Technology, 2-2-1, Matsuei, Yamagata 990-2473 (Japan); Ohbayashi, Norihiko, E-mail: n.ohbayashi@m.tohoku.ac.jp [Laboratory of Membrane Trafficking Mechanisms, Department of Developmental Biology and Neurosciences, Graduate School of Life Sciences, Tohoku University, Aobayama, Aoba-ku, Sendai, Miyagi 980-8578 (Japan); Fukuda, Mitsunori, E-mail: nori@m.tohoku.ac.jp [Laboratory of Membrane Trafficking Mechanisms, Department of Developmental Biology and Neurosciences, Graduate School of Life Sciences, Tohoku University, Aobayama, Aoba-ku, Sendai, Miyagi 980-8578 (Japan); Suga, Mitsuo, E-mail: msuga@jeol.co.jp [JEOL Ltd., 3-1-2, Musashino, Akishima, Tokyo 196-8558 (Japan); Sato, Chikara, E-mail: ti-sato@aist.go.jp [Biomedical Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), 1-1-4, Umezono, Tsukuba 305-8568 (Japan)

    2014-12-15

    An atmospheric scanning electron microscope (ASEM) with an open sample chamber and optical microscope (OM) is described and recent developments are reported. In this ClairScope system, the base of the open sample dish is sealed to the top of the inverted SEM column, allowing the liquid-immersed sample to be observed by OM from above and by SEM from below. The optical axes of the two microscopes are aligned, ensuring that the same sample areas are imaged to realize quasi-simultaneous correlative microscopy in solution. For example, the cathodoluminescence of ZnO particles was directly demonstrated. The improved system has (i) a fully motorized sample stage, (ii) a column protection system in the case of accidental window breakage, and (iii) an OM/SEM operation system controlled by a graphical user interface. The open sample chamber allows the external administration of reagents during sample observation. We monitored the influence of added NaCl on the random motion of silica particles in liquid. Further, using fluorescence as a transfection marker, the effect of small interfering RNA-mediated knockdown of endogenous Varp on Tyrp1 trafficking in melanocytes was examined. A temperature-regulated titanium ASEM dish allowed the dynamic observation of colloidal silver nanoparticles as they were heated to 240 °C and sintered. - Highlights: • Atmospheric SEM (ASEM) allows observation of samples in liquid or gas. • Open sample chamber allows in situ monitoring of evaporation and sintering processes. • in situ monitoring of processes during reagent administration is also accomplished. • Protection system for film breakage is developed for ASEM. • Usability of ASEM has been improved significantly including GUI control.

  14. Topological mapping and navigation in indoor environment with invisible barcode

    International Nuclear Information System (INIS)

    Huh, Jin Wook; Chung, Woong Sik; Chung, Wan Kyun

    2006-01-01

    This paper addresses the localization and navigation problem using invisible two dimensional barcodes on the floor. Compared with other methods using natural/artificial landmark, the proposed localization method has great advantages in cost and appearance, since the location of the robot is perfectly known using the barcode information after the mapping is finished. We also propose a navigation algorithm which uses the topological structure. For the topological information, we define nodes and edges which are suitable for indoor navigation, especially for large area having multiple rooms, many walls and many static obstacles. The proposed algorithm also has an advantage that errors occurred in each node are mutually independent and can be compensated exactly after some navigation using barcode. Simulation and experimental results were performed to verify the algorithm in the barcode environment, and the result showed an excellent performance. After mapping, it is also possible to solve the kidnapped case and generate paths using topological information

  15. Keeping track. Barcodes and RFID tags make inroads in hospitals.

    Science.gov (United States)

    Degaspari, John

    2011-03-01

    Barcodes are a proven technology for reducing medication administration errors, while RFID tags show promise for tracking of assets as well as personnel and patients. Yet implementation has been slow, as hospitals struggle with cost and complexity issues.

  16. The approximability of the String Barcoding problem

    Directory of Open Access Journals (Sweden)

    Rizzi Romeo

    2006-08-01

    Full Text Available Abstract The String Barcoding (SBC problem, introduced by Rash and Gusfield (RECOMB, 2002, consists in finding a minimum set of substrings that can be used to distinguish between all members of a set of given strings. In a computational biology context, the given strings represent a set of known viruses, while the substrings can be used as probes for an hybridization experiment via microarray. Eventually, one aims at the classification of new strings (unknown viruses through the result of the hybridization experiment. In this paper we show that SBC is as hard to approximate as Set Cover. Furthermore, we show that the constrained version of SBC (with probes of bounded length is also hard to approximate. These negative results are tight.

  17. Graded core/shell semiconductor nanorods and nanorod barcodes

    Science.gov (United States)

    Alivisatos, A. Paul; Scher, Erik C.; Manna, Liberato

    2010-12-14

    Graded core/shell semiconductor nanorods and shaped nanorods are disclosed comprising Group II-VI, Group III-V and Group IV semiconductors and methods of making the same. Also disclosed are nanorod barcodes using core/shell nanorods where the core is a semiconductor or metal material, and with or without a shell. Methods of labeling analytes using the nanorod barcodes are also disclosed.

  18. Halftone biasing OPC technology: an approach for achieving fine bias control on raster-scan systems

    Science.gov (United States)

    Nakagawa, Kent H.; Chen, J. Fung; Socha, Robert J.; Laidig, Thomas L.; Wampler, Kurt E.; Van Den Broeke, Douglas J.; Dusa, Mircea V.; Caldwell, Roger F.

    1999-08-01

    As the semiconductor roadmap continues to require imaging of smaller features on wafers, we continue to explore new approaches in OPC strategies to enhance existing technology. Advanced reticle design, intended for printing sub-wavelength features, requires the support of very fine-increment biases on semi-densely-pitched lines, where the CD correction requires only a fraction of the spot size of an e-beam system. Halftone biasing, a new OPC strategy, has been proposed to support these biases on a raster-scan e-beam system without the need for a reduced address unit and the consequent write time penalty. The manufacturability and inspectability of halftone-biased lines are explored, using an OPC characterization reticle. Pattern fidelity is examined using both optical and SEM tools. Printed DUV resist line edge profiles are compared for both halftone and non-halftone feature edges. Halftone biasing was applied to an SRAM-type simulation reticle, to examine its impact on data volume, write time reduction, and printing performance.

  19. First result from x-ray pulse height analyzer with radial scanning system for LHD

    Science.gov (United States)

    Muto, Sadatsugu; Morita, Shigeru

    2001-01-01

    Radial profiles of x-ray spectrum have been successfully obtained using an assembly of x-ray pulse height analyzer in large helical device. The observed profile is obtained from plasma heated by ICRF and neutral beam injection (NBI). As a detector, Si(Li) semiconductor is used with a histogramming memory and analog-to-digital converter (ADC) basically working at high counting rate up to 500 kcps. In routine operation a count rate of 62 kcps has been normally obtained with energy resolution better than 400 eV at iron Kα line. The assembly is equipped with four detectors and a radial scanning system which modulates sight lines of the detectors in major radius direction. The profiles of electron temperature and the intensity of metallic impurities have been obtained with a spatial resolution of a few centimeters. Measured electron temperature is in good agreement with that from Thomson scattering. The system is applicable to steady-state discharge. The design philosophy of the assembly and recent results on the performance tests are also presented.

  20. Three-photon fluorescence imaging of melanin with a dual-wedge confocal scanning system

    Science.gov (United States)

    Mega, Yair; Kerimo, Joseph; Robinson, Joseph; Vakili, Ali; Johnson, Nicolette; DiMarzio, Charles

    2012-03-01

    Confocal microscopy can be used as a practical tool in non-invasive applications in medical diagnostics and evaluation. In particular, it is being used for the early detection of skin cancer to identify pathological cellular components and, potentially, replace conventional biopsies. The detection of melanin and its spatial location and distribution plays a crucial role in the detection and evaluation of skin cancer. Our previous work has shown that the visible emission from melanin is strong and can be easily observed with a near-infrared CW laser using low power. This is due to a unique step-wise, (SW) three-photon excitation of melanin. This paper shows that the same SW, 3-photon fluorescence can also be achieved with an inexpensive, continuous-wave laser using a dual-prism scanning system. This demonstrates that the technology could be integrated into a portable confocal microscope for clinical applications. The results presented here are in agreement with images obtained with the larger and more expensive femtosecond laser system used earlier.

  1. Prospective cost-benefit analysis of a two-dimensional barcode for vaccine production, clinical documentation, and public health reporting and tracking.

    Science.gov (United States)

    O'Connor, Alan C; Kennedy, Erin D; Loomis, Ross J; Haque, Saira N; Layton, Christine M; Williams, Warren W; Amoozegar, Jacqueline B; Braun, Fern M; Honeycutt, Amanda A; Weinbaum, Cindy

    2013-06-28

    In the United States recording accurate vaccine lot numbers in immunization records is required by the National Childhood Vaccine Injury Act and is necessary for public health surveillance and implementation of vaccine product recalls. However, this information is often missing or inaccurate in records. The Food and Drug Administration (FDA) requires a linear barcode of the National Drug Code (NDC) on vaccine product labels as a medication verification measure, but lot number and expiration date must still be recorded by hand. Beginning in 2011, FDA permitted manufacturers to replace linear barcodes with two-dimensional (2D) barcodes on unit-of-use product labels. A 2D barcode can contain the NDC, expiration date, and lot number in a symbol small enough to fit on a unit-of-use label. All three data elements could be scanned into a patient record. To assess 2D barcodes' potential impacts, a mixed-methods approach of time-motion data analysis, interview and survey data collection, and cost-benefit analysis was employed. Analysis of a time-motion study conducted at 33 practices suggests scanning 2D-barcoded vaccines could reduce immunization documentation time by 36-39 s per dose. Data from an internet survey of primary care providers and local health officials indicate that 60% of pediatric practices, 54% of family medicine practices, and 39% of health departments would use the 2D barcode, with more indicating they would do so if they used electronic health records. Inclusive of manufacturer and immunization provider costs and benefits, we forecast lower-bound net benefits to be $310-334 million between 2011 and 2023 with a benefit-to-cost ratio of 3.1:1-3.2:1. Although we were unable to monetize benefits for expected improved immunization coverage, surveillance, or reduced medication errors, based on our findings, we expect that using 2D barcodes will lower vaccine documentation costs, facilitate data capture, and enhance immunization data quality. Copyright © 2013

  2. Comparison between a digital scanning system and a conventional screen film system in the full spine radiological procedure in pediatrics

    International Nuclear Information System (INIS)

    Espana, M. L.; Gomez, G.; Romero, A.; Minambres, A.; Albi, G.; Floriano, A.; Rodirguez, A.; Lopez Franco, P.

    2004-01-01

    To compare from both dosimetry and image quality standpoints, a digital scanning system with a conventional screen film system, in the full spine radiological procedure. The standard patient is considered to be 12 years old, and a sample of forty patients referred for full spine radiological procedure has been studied. Gonad shielding has been used in all the patients, and its efficiency has been evaluated. Dosimetric study includes Kerma-area product, and thorax and gonad entrance surface dose. Kerma area product has been measured using a transmission camera, and for entrance surface dose estimation both thermoluminescent dosemeter LiF: Mg, Cu, P and LiF: Mg, Ti have been utilized. Three radiologists have evaluated the image quality according to the degree of fulfilment of the image quality criteria. (Author) 22 refs

  3. Reading 1-D Barcodes with Mobile Phones Using Deformable Templates

    Science.gov (United States)

    Gallo, Orazio; Manduchi, Roberto

    2011-01-01

    Camera cellphones have become ubiquitous, thus opening a plethora of opportunities for mobile vision applications. For instance, they can enable users to access reviews or price comparisons for a product from a picture of its barcode while still in the store. Barcode reading needs to be robust to challenging conditions such as blur, noise, low resolution, or low quality camera lenses, all of which are extremely common. Surprisingly, even state-of-the-art barcode reading algorithms fail when some of these factors come into play. One reason resides in the early-commitment strategy that virtually all existing algorithms adopt: the image is first binarized and then only the binary data is processed. We propose a new approach to barcode decoding that bypasses binarization. Our technique relies on deformable templates and exploits all the gray level information of each pixel. Due to our parametrization of these templates, we can efficiently perform maximum likelihood estimation independently on each digit and enforce spatial coherence in a subsequent step. We show by way of experiments on challenging UPC-A barcode images from five different databases that our approach outperforms competing algorithms. Implemented on a Nokia N95 phone, our algorithm can localize and decode a barcode on a VGA image (640×480, JPEG compressed) in an average time of 400–500 ms. PMID:21173448

  4. Reading 1D Barcodes with Mobile Phones Using Deformable Templates.

    Science.gov (United States)

    Gallo, Orazio; Manduchi, Roberto

    2011-09-01

    Camera cellphones have become ubiquitous, thus opening a plethora of opportunities for mobile vision applications. For instance, they can enable users to access reviews or price comparisons for a product from a picture of its barcode while still in the store. Barcode reading needs to be robust to challenging conditions such as blur, noise, low resolution, or low-quality camera lenses, all of which are extremely common. Surprisingly, even state-of-the-art barcode reading algorithms fail when some of these factors come into play. One reason resides in the early commitment strategy that virtually all existing algorithms adopt: The image is first binarized and then only the binary data are processed. We propose a new approach to barcode decoding that bypasses binarization. Our technique relies on deformable templates and exploits all of the gray-level information of each pixel. Due to our parameterization of these templates, we can efficiently perform maximum likelihood estimation independently on each digit and enforce spatial coherence in a subsequent step. We show by way of experiments on challenging UPC-A barcode images from five different databases that our approach outperforms competing algorithms. Implemented on a Nokia N95 phone, our algorithm can localize and decode a barcode on a VGA image (640 × 480, JPEG compressed) in an average time of 400-500 ms.

  5. DNA reference libraries of French Guianese mosquitoes for barcoding and metabarcoding

    Science.gov (United States)

    Leroy, Céline; Guidez, Amandine; Dusfour, Isabelle; Girod, Romain; Dejean, Alain; Murienne, Jérôme

    2017-01-01

    The mosquito family (Diptera: Culicidae) constitutes the most medically important group of arthropods because certain species are vectors of human pathogens. In some parts of the world, the diversity is so high that the accurate delimitation and/or identification of species is challenging. A DNA-based identification system for all animals has been proposed, the so-called DNA barcoding approach. In this study, our objectives were (i) to establish DNA barcode libraries for the mosquitoes of French Guiana based on the COI and the 16S markers, (ii) to compare distance-based and tree-based methods of species delimitation to traditional taxonomy, and (iii) to evaluate the accuracy of each marker in identifying specimens. A total of 266 specimens belonging to 75 morphologically identified species or morphospecies were analyzed allowing us to delimit 86 DNA clusters with only 21 of them already present in the BOLD database. We thus provide a substantial contribution to the global mosquito barcoding initiative. Our results confirm that DNA barcodes can be successfully used to delimit and identify mosquito species with only a few cases where the marker could not distinguish closely related species. Our results also validate the presence of new species identified based on morphology, plus potential cases of cryptic species. We found that both COI and 16S markers performed very well, with successful identifications at the species level of up to 98% for COI and 97% for 16S when compared to traditional taxonomy. This shows great potential for the use of metabarcoding for vector monitoring and eco-epidemiological studies. PMID:28575090

  6. Barcoding lichen-forming fungi using 454 pyrosequencing is challenged by artifactual and biological sequence variation.

    Science.gov (United States)

    Mark, Kristiina; Cornejo, Carolina; Keller, Christine; Flück, Daniela; Scheidegger, Christoph

    2016-09-01

    Although lichens (lichen-forming fungi) play an important role in the ecological integrity of many vulnerable landscapes, only a minority of lichen-forming fungi have been barcoded out of the currently accepted ∼18 000 species. Regular Sanger sequencing can be problematic when analyzing lichens since saprophytic, endophytic, and parasitic fungi live intimately admixed, resulting in low-quality sequencing reads. Here, high-throughput, long-read 454 pyrosequencing in a GS FLX+ System was tested to barcode the fungal partner of 100 epiphytic lichen species from Switzerland using fungal-specific primers when amplifying the full internal transcribed spacer region (ITS). The present study shows the potential of DNA barcoding using pyrosequencing, in that the expected lichen fungus was successfully sequenced for all samples except one. Alignment solutions such as BLAST were found to be largely adequate for the generated long reads. In addition, the NCBI nucleotide database-currently the most complete database for lichen-forming fungi-can be used as a reference database when identifying common species, since the majority of analyzed lichens were identified correctly to the species or at least to the genus level. However, several issues were encountered, including a high sequencing error rate, multiple ITS versions in a genome (incomplete concerted evolution), and in some samples the presence of mixed lichen-forming fungi (possible lichen chimeras).

  7. Mobile gamma-ray scanning system for detecting radiation anomalies associated with 226Ra-bearing materials

    International Nuclear Information System (INIS)

    Myrick, T.E.; Blair, M.S.; Doane, R.W.; Goldsmith, W.A.

    1982-11-01

    A mobile gamma-ray scanning system has been developed by Oak Ridge National Laboratory for use in the Department of Energy's remedial action survey programs. The unit consists of a NaI(T1) detection system housed in a specially-equipped van. The system is operator controlled through an on-board mini-computer, with data output provided on the computer video screen, strip chart recorders, and an on-line printer. Data storage is provided by a floppy disk system. Multichannel analysis capabilities are included for qualitative radionuclide identification. A 226 Ra-specific algorithm is employed to identify locations containing residual radium-bearing materials. This report presents the details of the system description, software development, and scanning methods utilized with the ORNL system. Laboratory calibration and field testing have established the system sensitivity, field of view, and other performance characteristics, the results of which are also presented. Documentation of the instrumentation and computer programs are included

  8. Computer-assisted evaluation of pulmonary emphysema in CT scans: comparison between a locally developed system and a freeware system

    International Nuclear Information System (INIS)

    Felix, John Hebert da Silva; Cortez, Paulo Cesar; Costa, Rodrigo Carvalho Sousa; Fortaleza, Simone Castelo Branco; Pereira, Eanes Delgado Barros; Holanda, Marcelo Alcantara

    2009-01-01

    Objective: to present a locally developed system of computer vision for use with HRCT images, designated SIStema para a Deteccao e a quantificacao de Enfisema Pulmonar (SISDEP, System to Detect and Quantify Pulmonary Emphysema), and to compare this system with a free ware system tool. Methods: thirty-three HRCT images scanned at the apex, hilum and base of the lungs of 11 patients with COPD were analyzed. The SISDEP was compared with the Osiris Medical Imaging Software Program regarding lung parenchyma segmentation, precision of the measurement of the cross-sectional area of the lungs in mm 2 , mean lung density (MLD), relative area (RA) of the lung occupied by voxels with attenuation values 2 = 0.99, 0.99, 0.99 and 1.00, respectively). The color mask tool of the SISDEP allowed excellent visualization of hyper inflated areas, discriminating them from normal areas. Conclusions: the SISDEP was efficient in segmenting the lungs and quantifying lung hyper inflation, presenting an excellent correlation with the Osiris system. The SISDEP constitutes a promising computational tool for diagnosing and assessing the progression of emphysema in HRCT images of COPD patients. (author)

  9. Nuclear Scans

    Science.gov (United States)

    Nuclear scans use radioactive substances to see structures and functions inside your body. They use a special ... images. Most scans take 20 to 45 minutes. Nuclear scans can help doctors diagnose many conditions, including ...

  10. Technical Development of Gamma Scanning for Irradiated Fuel Rod after Upgrade of System in Hot-cell

    Energy Technology Data Exchange (ETDEWEB)

    Ryu, Woo Seog; Kim, Hee Moon; Baik, Seung Je; Yoo, Byung Ok; Choo, Yong Sun

    2007-06-15

    Non-destructive test system was installed at hot-cell(M1) in IMEF(Irradiated Materials Examination Facility) more than 10 years ago for the diametric measurement and gamma scanning of fuel rod. But this system must be needed to be remodeled for the effective operations. In 2006, the system was upgraded for 3 months. The collimator bench can be movable with horizontal direction(x-direction) by motorized system for sectional gamma scanning and 3-dimensional tomography of fuel rod. So, gamma scanning for fuel rod can be detectable by x, y and rotation directions. It may be possible to obtain the radioactivities with radial and axial directions of pellet. This system is good for the series experiments with several positions. Operation of fuel bench and gamma detection program were linked each other by new program tools. It can control detection and bench moving automatically when gamma inspection of fuel rod is carried out with axial or radial positions. Some of electronic parts were added in PLC panel, and operating panel was re-designed for the remote control. To operate the fuel bench by computer, AD converter and some I/O cards were installed in computer. All of software were developed in Windows-XP system instead of DOS system. Control programs were made by visual-C language. After upgrade of system, DUPIC fuel which was irradiated in HANARO research reactor was detected by gamma scanning. The results were good and operation of gamma scanning showed reduced inspection time and easy control of data on series of detection with axial positions. With consideration of ECT(Eddy Current Test) installation, the computer program and hardware were set up as well. But ECT is not installed yet, so we have to check abnormal situation of program and hardware system. It is planned to install ECT in 2007.

  11. INS/GPS/LiDAR Integrated Navigation System for Urban and Indoor Environments Using Hybrid Scan Matching Algorithm.

    Science.gov (United States)

    Gao, Yanbin; Liu, Shifei; Atia, Mohamed M; Noureldin, Aboelmagd

    2015-09-15

    This paper takes advantage of the complementary characteristics of Global Positioning System (GPS) and Light Detection and Ranging (LiDAR) to provide periodic corrections to Inertial Navigation System (INS) alternatively in different environmental conditions. In open sky, where GPS signals are available and LiDAR measurements are sparse, GPS is integrated with INS. Meanwhile, in confined outdoor environments and indoors, where GPS is unreliable or unavailable and LiDAR measurements are rich, LiDAR replaces GPS to integrate with INS. This paper also proposes an innovative hybrid scan matching algorithm that combines the feature-based scan matching method and Iterative Closest Point (ICP) based scan matching method. The algorithm can work and transit between two modes depending on the number of matched line features over two scans, thus achieving efficiency and robustness concurrently. Two integration schemes of INS and LiDAR with hybrid scan matching algorithm are implemented and compared. Real experiments are performed on an Unmanned Ground Vehicle (UGV) for both outdoor and indoor environments. Experimental results show that the multi-sensor integrated system can remain sub-meter navigation accuracy during the whole trajectory.

  12. Robust dead reckoning system for mobile robots based on particle filter and raw range scan.

    Science.gov (United States)

    Duan, Zhuohua; Cai, Zixing; Min, Huaqing

    2014-09-04

    Robust dead reckoning is a complicated problem for wheeled mobile robots (WMRs), where the robots are faulty, such as the sticking of sensors or the slippage of wheels, for the discrete fault models and the continuous states have to be estimated simultaneously to reach a reliable fault diagnosis and accurate dead reckoning. Particle filters are one of the most promising approaches to handle hybrid system estimation problems, and they have also been widely used in many WMRs applications, such as pose tracking, SLAM, video tracking, fault identification, etc. In this paper, the readings of a laser range finder, which may be also interfered with by noises, are used to reach accurate dead reckoning. The main contribution is that a systematic method to implement fault diagnosis and dead reckoning in a particle filter framework concurrently is proposed. Firstly, the perception model of a laser range finder is given, where the raw scan may be faulty. Secondly, the kinematics of the normal model and different fault models for WMRs are given. Thirdly, the particle filter for fault diagnosis and dead reckoning is discussed. At last, experiments and analyses are reported to show the accuracy and efficiency of the presented method.

  13. BrainWatch software for interactive exploration of brain scans in 3D virtual reality systems.

    Science.gov (United States)

    Taswell, S Koby; Veeramacheneni, Teja; Taswell, Carl

    2017-07-01

    The ability to view medical images as 3D objects, which can be explored interactively, has now become possible due to the advent of rapidly emerging virtual reality (VR) technologies. In the past, VR has been used as an educational tool for learning anatomy, a visualization tool for assisting surgery, and a therapeutic tool for rehabilitating patients with motor disorders. However, these older systems were either expensive to build or difficult to acquire and use. Exploiting the arrival of new consumer devices such as the Oculus Rift that are now affordable, we have developed a software application called BrainWatch for VR ready computers to enable 3D visualization and interactive exploration of DICOM data sets focusing on PET and MRI brain scans. BrainWatch software provides a unique set of 3 approaches for interacting with the virtual object which we have named the observatory scenario with an external camera, the planetarium scenario with an internal camera, and the voyager scenario with a mobile camera. A live interactive demo of BrainWatch VR with the Oculus Rift CV1 will be available for conference attendees to experience at EMBC 2017.

  14. A FEASIBILITY STUDY ON USE OF GENERIC MOBILE LASER SCANNING SYSTEM FOR DETECTING ASPHALT PAVEMENT CRACKS

    Directory of Open Access Journals (Sweden)

    X. Chen

    2016-06-01

    Full Text Available This study aims to automatically detect pavement cracks on urban roads by employing the 3D point clouds acquired by a mobile laser scanning (MLS system. Our method consists of four steps: ground point filtering, high-pass convolution, matched filtering, and noise removal. First, a voxel-based upward growing method is applied to construct Digital Terrain Model (DTM of the road surface. Then, a high-pass filter convolutes the DTM to detect local elevation changes that may embed cracking information. Next, a two-step matched filter is applied to extract crack features. Lastly, a noise removal process is conducted to refine the results. Instead of using MLS intensity, this study takes advantages of the MLS elevation information to perform automated crack detection from large-volume, mixed-density, unstructured MLS point clouds. Four types of cracks including longitudinal, transvers, random, and alligator cracks are detected. Our results demonstrated that the proposed method works well with the RIEGL VMX-450 point clouds and can detect cracks in moderate-to-severe severity (13 - 25 mm within a 200 m by 30 m urban road segment located in Kingston, Ontario, at one time. Due to the resolution capability, small cracks with slight severity remain unclear in the MLS point cloud.

  15. Image-based autonomous micromanipulation system for arrangement of spheres in a scanning electron microscope

    International Nuclear Information System (INIS)

    Kasaya, Takeshi; Miyazaki, Hideki T.; Saito, Shigeki; Koyano, Koichi; Yamaura, Tomio; Sato, Tomomasa

    2004-01-01

    The micromanipulation technique in a scanning electron microscope (SEM) has been attracting interest as a technique to produce microstructures such as three-dimensional photonic crystals or advanced high-density electronic circuits. However, it is difficult to fabricate a large-scale structure or to conduct a systematic experiment using numbers of structures, as long as we rely on manually operated micromanipulation. In this study, we constructed an automatic system which arranges 10-μm-sized microspheres into a given two-dimensional pattern in a SEM. The spheres are picked up by touching with the center of the planar tip of a probe (needle), and placed on the substrate by moving the contact point to the edge of the tip and inclining the probe. The positions of the probe and the spheres are visually recognized from the SEM image from above and the optical microscope image from the side. The generalized Hough transform, which can robustly detect arbitrary shape from the edge fragments, is employed for the image recognition. Contact force information obtained by a force sensor with a resolution of 14 μN is also utilized for the control. Completely automatic rearrangement of randomly sprinkled metal spheres with a diameter of 30 μm into arbitrary patterns was successfully demonstrated. Autonomous micromanipulation technique under the observation of a SEM would contribute not merely to laboratories but also to the opto-electronics industry

  16. Cosmetic and aesthetic skin photosurgery using a computer-assisted CO2 laser-scanning system

    Science.gov (United States)

    Dutu, Doru C. A.; Dumitras, Dan C.; Nedelcu, Ioan; Ghetie, Sergiu D.

    1997-12-01

    Since the first application of CO2 laser in skin photosurgery, various techniques such as laser pulsing, beam scanning and computer-assisted laser pulse generator have been introduced for the purpose of reducing tissue carbonization and thermal necrosis. Using a quite simple XY optical scanner equipped with two galvanometric driven mirrors and an appropriate software to process the scanning data and control the interaction time and energy density in the scanned area, we have obtained a device which can improve CO2 laser application in cosmetic and aesthetic surgery. The opto-mechanical CO2 laser scanner based on two total reflecting flat mirrors placed at 90 degree(s) in respect to the XY scanning directions and independently driven through a magnetic field provides a linear movement of the incident laser beam in the operating field. A DA converter supplied with scanning data by the software enables a scanning with linearity better than 1% for a maximum angular deviation of 20 degree(s). Because the scanning quality of the laser beam in the operating field is given not only by the displacement function of the two mirrors, but also by the beam characteristics in the focal plane and the cross distribution in the laser beam, the surgeon can control through software either the scanning field dimensions or the distance between two consecutive points of the vertically and/or horizontally sweep line. The development of computer-assisted surgical scanning techniques will help control the surgical laser, to create either a reproducible incision with a controlled depth or a controlled incision pattern with minimal incision width, a long desired facility for plastic surgery, neurosurgery, ENT and dentistry.

  17. The neuromuscular system of Pycnophyes kielensis (Kinorhyncha: Allomalorhagida investigated by confocal laser scanning microscopy

    Directory of Open Access Journals (Sweden)

    Andreas Altenburger

    2016-11-01

    Full Text Available Abstract Background Kinorhynchs are ecdysozoan animals with a phylogenetic position close to priapulids and loriciferans. To understand the nature of segmentation within Kinorhyncha and to infer a probable ancestry of segmentation within the last common ancestor of Ecdysozoa, the musculature and the nervous system of the allomalorhagid kinorhynch Pycnophyes kielensis were investigated by use of immunohistochemistry, confocal laser scanning microscopy, and 3D reconstruction software. Results The kinorhynch body plan comprises 11 trunk segments. Trunk musculature consists of paired ventral and dorsal longitudinal muscles in segments 1–10 as well as dorsoventral muscles in segments 1–11. Dorsal and ventral longitudinal muscles insert on apodemes of the cuticle inside the animal within each segment. Strands of longitudinal musculature extend over segment borders in segments 1–6. In segments 7–10, the trunk musculature is confined to the segments. Musculature of the digestive system comprises a strong pharyngeal bulb with attached mouth cone muscles as well as pharyngeal bulb protractors and retractors. The musculature of the digestive system shows no sign of segmentation. Judged by the size of the pharyngeal bulb protractors and retractors, the pharyngeal bulb, as well as the introvert, is moved passively by internal pressure caused by concerted action of the dorsoventral muscles. The nervous system comprises a neuropil ring anterior to the pharyngeal bulb. Associated with the neuropil ring are flask-shaped serotonergic somata extending anteriorly and posteriorly. A ventral nerve cord is connected to the neuropil ring and runs toward the anterior until an attachment point in segment 1, and from there toward the posterior with one ganglion in segment 6. Conclusions Segmentation within Kinorhyncha likely evolved from an unsegmented ancestor. This conclusion is supported by continuous trunk musculature in the anterior segments 1–6, continuous

  18. The neuromuscular system of Pycnophyes kielensis (Kinorhyncha: Allomalorhagida) investigated by confocal laser scanning microscopy.

    Science.gov (United States)

    Altenburger, Andreas

    2016-01-01

    Kinorhynchs are ecdysozoan animals with a phylogenetic position close to priapulids and loriciferans. To understand the nature of segmentation within Kinorhyncha and to infer a probable ancestry of segmentation within the last common ancestor of Ecdysozoa, the musculature and the nervous system of the allomalorhagid kinorhynch Pycnophyes kielensis were investigated by use of immunohistochemistry, confocal laser scanning microscopy, and 3D reconstruction software. The kinorhynch body plan comprises 11 trunk segments. Trunk musculature consists of paired ventral and dorsal longitudinal muscles in segments 1-10 as well as dorsoventral muscles in segments 1-11. Dorsal and ventral longitudinal muscles insert on apodemes of the cuticle inside the animal within each segment. Strands of longitudinal musculature extend over segment borders in segments 1-6. In segments 7-10, the trunk musculature is confined to the segments. Musculature of the digestive system comprises a strong pharyngeal bulb with attached mouth cone muscles as well as pharyngeal bulb protractors and retractors. The musculature of the digestive system shows no sign of segmentation. Judged by the size of the pharyngeal bulb protractors and retractors, the pharyngeal bulb, as well as the introvert, is moved passively by internal pressure caused by concerted action of the dorsoventral muscles. The nervous system comprises a neuropil ring anterior to the pharyngeal bulb. Associated with the neuropil ring are flask-shaped serotonergic somata extending anteriorly and posteriorly. A ventral nerve cord is connected to the neuropil ring and runs toward the anterior until an attachment point in segment 1, and from there toward the posterior with one ganglion in segment 6. Segmentation within Kinorhyncha likely evolved from an unsegmented ancestor. This conclusion is supported by continuous trunk musculature in the anterior segments 1-6, continuous pharyngeal bulb protractors and retractors throughout the anterior

  19. Atomic Metrology in Ordered/Disordered Systems Using Scanning Transmission Electron Microscopy

    Science.gov (United States)

    Oni, Adedapo Adesoji

    Electron microscopy has become a powerful tool for the characterization of material structure from the micron-scale to the Angstrom-scale. Notably, scanning transmission electron microscopy (STEM) with sub-Angstrom imaging capability provides access to atomic structure information. The latest STEMs equipped with small electron sources (Schottky or cold field emission gun), aberration-correctors, and improved electronic and mechanical stability enables spatial resolution better than 1 A. Herein, electron microscopy is utlized for structural and chemical atomic-scale characterization of ordered/disordered material systems. Structural quantification is commonly performed using spatially averaging approaches, such as X-ray or neutron diffraction. These techniques preclude real space analysis with local spatial sensitivity, e.g. across interfaces or at defects. In contrast, atomic resolution STEM enables direct imaging of the crystal structures, but until now, drift distortion has prevented accurate crystallographic measurements. Rather, the development of revolving STEM (RevSTEM) has enabled direct lattice parameter measurements to be performed across ordered/disordered systems using a probe{corrected scanning tranmission electron microscope with high accuracy and precision. Furthermore, the high spatial resolution of the probe-corrected STEM and advancement in the high sensitivity detector system owing to the state-of-the-art Super-X energy dispersive X-ray spectroscopy (EDS) detector enables simultaneous EDS elemental mapping at atomic resolution. Consequently, the site preference of solute atoms can be directly determined in the structure sublattice of the ordered intermetallic phase. Also, chemical segregation behavior of the constitutent elements within the microstructure are investigated using a combination of EDS and atom probe tomography (APT) analysis. In this dissertation, strain analysis was conducted across electron microscopy sample using multiple atomic

  20. DNA Barcoding: Amplification and sequence analysis of rbcl and matK genome regions in three divergent plant species

    Directory of Open Access Journals (Sweden)

    Javed Iqbal Wattoo

    2016-11-01

    Full Text Available Background: DNA barcoding is a novel method of species identification based on nucleotide diversity of conserved sequences. The establishment and refining of plant DNA barcoding systems is more challenging due to high genetic diversity among different species. Therefore, targeting the conserved nuclear transcribed regions would be more reliable for plant scientists to reveal genetic diversity, species discrimination and phylogeny. Methods: In this study, we amplified and sequenced the chloroplast DNA regions (matk+rbcl of Solanum nigrum, Euphorbia helioscopia and Dalbergia sissoo to study the functional annotation, homology modeling and sequence analysis to allow a more efficient utilization of these sequences among different plant species. These three species represent three families; Solanaceae, Euphorbiaceae and Fabaceae respectively. Biological sequence homology and divergence of amplified sequences was studied using Basic Local Alignment Tool (BLAST. Results: Both primers (matk+rbcl showed good amplification in three species. The sequenced regions reveled conserved genome information for future identification of different medicinal plants belonging to these species. The amplified conserved barcodes revealed different levels of biological homology after sequence analysis. The results clearly showed that the use of these conserved DNA sequences as barcode primers would be an accurate way for species identification and discrimination. Conclusion: The amplification and sequencing of conserved genome regions identified a novel sequence of matK in native species of Solanum nigrum. The findings of the study would be applicable in medicinal industry to establish DNA based identification of different medicinal plant species to monitor adulteration.

  1. Review: two-photon scanning systems for clinical high resolution in vivo tissue imaging

    Science.gov (United States)

    König, K.; Müller, J.; Höfer, M.; Müller, C.; Weinigel, M.; Bückle, R.; Elsner, P.; Kaatz, M.; Messerschmidt, B.

    2008-02-01

    The femtosecond laser multiphoton tomograph DermaInspect as well as high NA two-photon GRIN microendoscopes for in vivo tomography of human skin have been used to detect malignant melanoma as well as to study the diffusion and intradermal accumulation of topically applied cosmetical and pharmaceutical components. So far, more than 500 patients and volunteers in Europe, Australia, and Asia have been investigated with this unique tomograph. Near infrared 80 MHz picojoule femtosecond laser pulses were employed to excite endogenous fluorophores such as NAD(P)H, flavoproteins, melanin, and elastin as well as fluorescent components of a variety of ointments via a twophoton excitation process. In addition, collagen has been imaged by second harmonic generation. Using a two-PMT detection system, the ratio of elastin to collagen was determined during optical sectioning. A high submicron spatial resolution and 50 picosecond temporal resolution was achieved using galvoscan mirrors and piezodriven focusing optics as well as a time-correlated single photon counting module with a fast microchannel plate detector and fast photomultipliers. Individual intratissue cells, mitochondria, melanosomes, and the morphology of the nuclei as well as extracellular matrix elements could be clearly visualized due to molecular imaging and the calculation of fluorescence lifetime images. Nanoparticles and intratissue drugs have been detected non-invasively, in situ and over a period of up to 3 months. In addition, hydration effects and UV effects were studied by monitoring modifications of cellular morphology and autofluorescence. The system was used to observe the diffusion through the stratum corneum and the accumulation and release of functionalized nanoparticles along hair shafts and epidermal ridges. The DermaInspect been also employed to gain information on skin age and wound healing in patients with ulcers. Novel developments include a galvo/piezo-scan driven flexible articulated arm as

  2. Characterizing a Proton Beam Scanning System for Monte Carlo Dose Calculation in Patients

    Science.gov (United States)

    Grassberger, C; Lomax, Tony; Paganetti, H

    2015-01-01

    The presented work has two goals. First, to demonstrate the feasibility of accurately characterizing a proton radiation field at treatment head exit for Monte Carlo dose calculation of active scanning patient treatments. Second, to show that this characterization can be done based on measured depth dose curves and spot size alone, without consideration of the exact treatment head delivery system. This is demonstrated through calibration of a Monte Carlo code to the specific beam lines of two institutions, Massachusetts General Hospital (MGH) and Paul Scherrer Institute (PSI). Comparison of simulations modeling the full treatment head at MGH to ones employing a parameterized phase space of protons at treatment head exit reveals the adequacy of the method for patient simulations. The secondary particle production in the treatment head is typically below 0.2% of primary fluence, except for low–energy electrons (protons), whose contribution to skin dose is negligible. However, there is significant difference between the two methods in the low-dose penumbra, making full treatment head simulations necessary to study out-of field effects such as secondary cancer induction. To calibrate the Monte Carlo code to measurements in a water phantom, we use an analytical Bragg peak model to extract the range-dependent energy spread at the two institutions, as this quantity is usually not available through measurements. Comparison of the measured with the simulated depth dose curves demonstrates agreement within 0.5mm over the entire energy range. Subsequently, we simulate three patient treatments with varying anatomical complexity (liver, head and neck and lung) to give an example how this approach can be employed to investigate site-specific discrepancies between treatment planning system and Monte Carlo simulations. PMID:25549079

  3. Equivalente esférico e valores da espessura da camada de fibras nervosas obtidas com o GDX TM Scanning Laser System® Spherical equivalent and nerve fiber layer thickness assessed with GDX TM Scanning Laser System®

    Directory of Open Access Journals (Sweden)

    Lênio Souza Alvarenga

    1999-12-01

    Full Text Available Objetivo: Estudar a influência do equivalente esférico nos valores obtidos pelo GDX TM Scanning Laser System®. Métodos: Foram avaliados 41 olhos de 41 voluntários sem doenças oculares e com campo visual sem alterações. Foi realizada a polarimetria de varredura a laser com o GDX TM Scanning Laser System® de acordo com as instruções contidas no manual do aparelho. Foram comparados os valores obtidos nesse exame em um grupo de pacientes com equivalente esférico positivo e em um outro com este valor nulo ou negativo, pelo teste de Mann-Whitney. Resultados: Não se verificou diferença estatística entre os valores obtidos nos olhos de pacientes do grupo I e os do grupo II. Não foi encontrada correlação entre o equivalente esférico e os valores obtidos com o GDX TM Scanning Laser System®. Conclusões: Na amostra estudada não houve diferença estatística entre os valores obtidos em um grupo de olhos com equivalente esférico positivo e outro com este valor negativo ou nulo, usando-se o GDX TM Scanning Laser System®.Purpose: To evaluate the effect of spherical equivalent on the acquisition of nerve fiber layer (NFL thickness with GDX TM Scanning Laser System®. Methods: Forty-one eyes of 41 volunteers were enrolled in this study. All of them presented with no ocular disease and no visual field defect. The NFL thickness was measured with GDX TM Scanning Laser System® as described in its manual. The values obtained in a group of volunteers with negative spherical equivalent (group I were compared to those from a group with a positive spherical equivalent (group II by the Mann-Whitney test. Results: There was no statistical difference between mea-surements in eyes of group I and those in group II. The NFL thickness measurements were not correlated with the sphe-rical equivalent. Conclusions: In the studied group there was no statistical difference in the GDX TM Scanning Laser System® parameters related to spherical equivalent.

  4. Image-based tracking system for vibration measurement of a rotating object using a laser scanning vibrometer

    Energy Technology Data Exchange (ETDEWEB)

    Kim, Dongkyu, E-mail: akein@gist.ac.kr; Khalil, Hossam; Jo, Youngjoon; Park, Kyihwan, E-mail: khpark@gist.ac.kr [School of Mechatronics, Gwangju Institute of Science and Technology, Buk-gu, Gwangju, South Korea, 500-712 (Korea, Republic of)

    2016-06-28

    An image-based tracking system using laser scanning vibrometer is developed for vibration measurement of a rotating object. The proposed system unlike a conventional one can be used where the position or velocity sensor such as an encoder cannot be attached to an object. An image processing algorithm is introduced to detect a landmark and laser beam based on their colors. Then, through using feedback control system, the laser beam can track a rotating object.

  5. Image-based tracking system for vibration measurement of a rotating object using a laser scanning vibrometer

    International Nuclear Information System (INIS)

    Kim, Dongkyu; Khalil, Hossam; Jo, Youngjoon; Park, Kyihwan

    2016-01-01

    An image-based tracking system using laser scanning vibrometer is developed for vibration measurement of a rotating object. The proposed system unlike a conventional one can be used where the position or velocity sensor such as an encoder cannot be attached to an object. An image processing algorithm is introduced to detect a landmark and laser beam based on their colors. Then, through using feedback control system, the laser beam can track a rotating object.

  6. Application of Barcoding to Reduce Error of Patient Identification and to Increase Patient's Information Confidentiality of Test Tube Labelling in a Psychiatric Teaching Hospital.

    Science.gov (United States)

    Liu, Hsiu-Chu; Li, Hsing; Chang, Hsin-Fei; Lu, Mei-Rou; Chen, Feng-Chuan

    2015-01-01

    Learning from the experience of another medical center in Taiwan, Kaohsiung Municipal Kai-Suan Psychiatric Hospital has changed the nursing informatics system step by step in the past year and a half . We considered ethics in the original idea of implementing barcodes on the test tube labels to process the identification of the psychiatric patients. The main aims of this project are to maintain the confidential information and to transport the sample effectively. The primary nurses had been using different work sheets for this project to ensure the acceptance of the new barcode system. In the past two years the errors in the blood testing process were as high as 11,000 in 14,000 events per year, resulting in wastage of resources. The actions taken by the nurses and the new barcode system implementation can improve the clinical nursing care quality, safety of the patients, and efficiency, while decreasing the cost due to the human error.

  7. Patterns of DNA barcode variation in Canadian marine molluscs.

    Science.gov (United States)

    Layton, Kara K S; Martel, André L; Hebert, Paul D N

    2014-01-01

    Molluscs are the most diverse marine phylum and this high diversity has resulted in considerable taxonomic problems. Because the number of species in Canadian oceans remains uncertain, there is a need to incorporate molecular methods into species identifications. A 648 base pair segment of the cytochrome c oxidase subunit I gene has proven useful for the identification and discovery of species in many animal lineages. While the utility of DNA barcoding in molluscs has been demonstrated in other studies, this is the first effort to construct a DNA barcode registry for marine molluscs across such a large geographic area. This study examines patterns of DNA barcode variation in 227 species of Canadian marine molluscs. Intraspecific sequence divergences ranged from 0-26.4% and a barcode gap existed for most taxa. Eleven cases of relatively deep (>2%) intraspecific divergence were detected, suggesting the possible presence of overlooked species. Structural variation was detected in COI with indels found in 37 species, mostly bivalves. Some indels were present in divergent lineages, primarily in the region of the first external loop, suggesting certain areas are hotspots for change. Lastly, mean GC content varied substantially among orders (24.5%-46.5%), and showed a significant positive correlation with nearest neighbour distances. DNA barcoding is an effective tool for the identification of Canadian marine molluscs and for revealing possible cases of overlooked species. Some species with deep intraspecific divergence showed a biogeographic partition between lineages on the Atlantic, Arctic and Pacific coasts, suggesting the role of Pleistocene glaciations in the subdivision of their populations. Indels were prevalent in the barcode region of the COI gene in bivalves and gastropods. This study highlights the efficacy of DNA barcoding for providing insights into sequence variation across a broad taxonomic group on a large geographic scale.

  8. Systematic analyses of vibration noise of a vibration isolation system for high-resolution scanning tunneling microscopes.

    Science.gov (United States)

    Iwaya, Katsuya; Shimizu, Ryota; Hashizume, Tomihiro; Hitosugi, Taro

    2011-08-01

    We designed and constructed an effective vibration isolation system for stable scanning tunneling microscopy measurements using a separate foundation and two vibration isolation stages (i.e., a combination of passive and active vibration isolation dampers). Systematic analyses of vibration data along the horizontal and vertical directions are present, including the vibration transfer functions of each stage and the overall vibration isolation system. To demonstrate the performance of the system, tunneling current noise measurements are conducted with and without the vibration isolation. Combining passive and active vibration isolation dampers successfully removes most of the vibration noise in the tunneling current up to 100 Hz. These comprehensive vibration noise data, along with details of the entire system, can be used to establish a clear guideline for building an effective vibration isolation system for various scanning probe microscopes and electron microscopes.

  9. DNA barcoding of vouchered xylarium wood specimens of nine endangered Dalbergia species

    Science.gov (United States)

    Min Yu; Lichao Jiao; Juan Guo; Alex C. Wiedenhoeft; Tuo He; Xiaomei Jiang; Yafang Yin

    2017-01-01

    ITS2+trnH-psbA was the best combination of DNA barcode to resolve the Dalbergia wood species studied. We demonstrate the feasibility of building a DNA barcode reference database using xylarium wood specimens.

  10. Locating and decoding barcodes in fuzzy images captured by smart phones

    Science.gov (United States)

    Deng, Wupeng; Hu, Jiwei; Liu, Quan; Lou, Ping

    2017-07-01

    With the development of barcodes for commercial use, people's requirements for detecting barcodes by smart phone become increasingly pressing. The low quality of barcode image captured by mobile phone always affects the decoding and recognition rates. This paper focuses on locating and decoding EAN-13 barcodes in fuzzy images. We present a more accurate locating algorithm based on segment length and high fault-tolerant rate algorithm for decoding barcodes. Unlike existing approaches, location algorithm is based on the edge segment length of EAN -13 barcodes, while our decoding algorithm allows the appearance of fuzzy region in barcode image. Experimental results are performed on damaged, contaminated and scratched digital images, and provide a quite promising result for EAN -13 barcode location and decoding.

  11. DNA barcoding in the media: does coverage of cool science reflect its social context?

    Science.gov (United States)

    Geary, Janis; Camicioli, Emma; Bubela, Tania

    2016-09-01

    Paul Hebert and colleagues first described DNA barcoding in 2003, which led to international efforts to promote and coordinate its use. Since its inception, DNA barcoding has generated considerable media coverage. We analysed whether this coverage reflected both the scientific and social mandates of international barcoding organizations. We searched newspaper databases to identify 900 English-language articles from 2003 to 2013. Coverage of the science of DNA barcoding was highly positive but lacked context for key topics. Coverage omissions pose challenges for public understanding of the science and applications of DNA barcoding; these included coverage of governance structures and issues related to the sharing of genetic resources across national borders. Our analysis provided insight into how barcoding communication efforts have translated into media coverage; more targeted communication efforts may focus media attention on previously omitted, but important topics. Our analysis is timely as the DNA barcoding community works to establish the International Society for the Barcode of Life.

  12. DNA barcoding of the vegetable leafminer Liriomyza sativae Blanchard (Diptera: Agromyzidae) in Bangladesh

    Science.gov (United States)

    DNA barcoding revealed the presence of the polyphagous leafminer pest Liriomyza sativae Blanchard in Bangladesh. DNA barcode sequences for mitochondrial COI were generated for Agromyzidae larvae, pupae and adults collected from field populations across Bangladesh. BLAST sequence similarity searches ...

  13. A robust SNP barcode for typing Mycobacterium tuberculosis complex strains

    KAUST Repository

    Coll, Francesc

    2014-09-01

    Strain-specific genomic diversity in the Mycobacterium tuberculosis complex (MTBC) is an important factor in pathogenesis that may affect virulence, transmissibility, host response and emergence of drug resistance. Several systems have been proposed to classify MTBC strains into distinct lineages and families. Here, we investigate single-nucleotide polymorphisms (SNPs) as robust (stable) markers of genetic variation for phylogenetic analysis. We identify ∼92k SNP across a global collection of 1,601 genomes. The SNP-based phylogeny is consistent with the gold-standard regions of difference (RD) classification system. Of the ∼7k strain-specific SNPs identified, 62 markers are proposed to discriminate known circulating strains. This SNP-based barcode is the first to cover all main lineages, and classifies a greater number of sublineages than current alternatives. It may be used to classify clinical isolates to evaluate tools to control the disease, including therapeutics and vaccines whose effectiveness may vary by strain type. © 2014 Macmillan Publishers Limited.

  14. Final report: Mapping Interactions in Hybrid Systems with Active Scanning Probes

    Energy Technology Data Exchange (ETDEWEB)

    Berezovsky, Jesse [Case Western Reserve Univ., Cleveland, OH (United States)

    2017-09-29

    This project aimed to study and map interactions between components of hybrid nanodevices using a novel scanning probe approach. To enable this work, we initially constructed a flexible experimental apparatus allowing for simultaneous scanning probe and confocal optical microscopy measurements. This setup was first used for all-optical measurements of nanostructures, with the focus then shifting to hybrid devices in which single coherent electron spins are coupled to micron-scale ferromagnetic elements, which may prove useful for addressing single spins, enhanced sensing, or spin-wave-mediated coupling of spins for quantum information applications. A significant breakthrough was the realization that it is not necessary to fabricate a magnetic structure on a scanning probe – instead a ferromagnetic vortex core can act as an integrated, solid state, scanning probe. The core of the vortex produces a very strong, localized fringe field which can be used analogously to an MFM tip. Unlike a traditional MFM tip, however, the vortex core is scanned within an integrated device (eliminating drift), and can be moved on vastly faster timescales. This approach allows the detailed investigation of interactions between single spins and complex driven ferromagnetic dynamics.

  15. [Clinical effect of three dimensional human body scanning system BurnCalc in the evaluation of burn wound area].

    Science.gov (United States)

    Lu, J; Wang, L; Zhang, Y C; Tang, H T; Xia, Z F

    2017-10-20

    Objective: To validate the clinical effect of three dimensional human body scanning system BurnCalc developed by our research team in the evaluation of burn wound area. Methods: A total of 48 burn patients treated in the outpatient department of our unit from January to June 2015, conforming to the study criteria, were enrolled in. For the first 12 patients, one wound on the limbs or torso was selected from each patient. The stability of the system was tested by 3 attending physicians using three dimensional human body scanning system BurnCalc to measure the area of wounds individually. For the following 36 patients, one wound was selected from each patient, including 12 wounds on limbs, front torso, and side torso, respectively. The area of wounds was measured by the same attending physician using transparency tracing method, National Institutes of Health (NIH) Image J method, and three dimensional human body scanning system BurnCalc, respectively. The time for getting information of 36 wounds by three methods was recorded by stopwatch. The stability among the testers was evaluated by the intra-class correlation coefficient (ICC). Data were processed with randomized blocks analysis of variance and Bonferroni test. Results: (1) Wound area of patients measured by three physicians using three dimensional human body scanning system BurnCalc was (122±95), (121±95), and (123±96) cm(2,) respectively, and there was no statistically significant difference among them ( F =1.55, P >0.05). The ICC among 3 physicians was 0.999. (2) The wound area of limbs of patients measured by transparency tracing method, NIH Image J method, and three dimensional human body scanning system BurnCalc was (84±50), (76±46), and (84±49) cm(2,) respectively. There was no statistically significant difference in the wound area of limbs of patients measured by transparency tracing method and three dimensional human body scanning system BurnCalc ( P >0.05). The wound area of limbs of patients

  16. DNA barcoding of Bemisia tabaci complex (Hemiptera: Aleyrodidae) reveals southerly expansion of the dominant whitefly species on cotton in Pakistan.

    Science.gov (United States)

    Ashfaq, Muhammad; Hebert, Paul D N; Mirza, M Sajjad; Khan, Arif M; Mansoor, Shahid; Shah, Ghulam S; Zafar, Yusuf

    2014-01-01

    Although whiteflies (Bemisia tabaci complex) are an important pest of cotton in Pakistan, its taxonomic diversity is poorly understood. As DNA barcoding is an effective tool for resolving species complexes and analyzing species distributions, we used this approach to analyze genetic diversity in the B. tabaci complex and map the distribution of B. tabaci lineages in cotton growing areas of Pakistan. Sequence diversity in the DNA barcode region (mtCOI-5') was examined in 593 whiteflies from Pakistan to determine the number of whitefly species and their distributions in the cotton-growing areas of Punjab and Sindh provinces. These new records were integrated with another 173 barcode sequences for B. tabaci, most from India, to better understand regional whitefly diversity. The Barcode Index Number (BIN) System assigned the 766 sequences to 15 BINs, including nine from Pakistan. Representative specimens of each Pakistan BIN were analyzed for mtCOI-3' to allow their assignment to one of the putative species in the B. tabaci complex recognized on the basis of sequence variation in this gene region. This analysis revealed the presence of Asia II 1, Middle East-Asia Minor 1, Asia 1, Asia II 5, Asia II 7, and a new lineage "Pakistan". The first two taxa were found in both Punjab and Sindh, but Asia 1 was only detected in Sindh, while Asia II 5, Asia II 7 and "Pakistan" were only present in Punjab. The haplotype networks showed that most haplotypes of Asia II 1, a species implicated in transmission of the cotton leaf curl virus, occurred in both India and Pakistan. DNA barcodes successfully discriminated cryptic species in B. tabaci complex. The dominant haplotypes in the B. tabaci complex were shared by India and Pakistan. Asia II 1 was previously restricted to Punjab, but is now the dominant lineage in southern Sindh; its southward spread may have serious implications for cotton plantations in this region.

  17. DNA barcoding of Bemisia tabaci complex (Hemiptera: Aleyrodidae reveals southerly expansion of the dominant whitefly species on cotton in Pakistan.

    Directory of Open Access Journals (Sweden)

    Muhammad Ashfaq

    Full Text Available Although whiteflies (Bemisia tabaci complex are an important pest of cotton in Pakistan, its taxonomic diversity is poorly understood. As DNA barcoding is an effective tool for resolving species complexes and analyzing species distributions, we used this approach to analyze genetic diversity in the B. tabaci complex and map the distribution of B. tabaci lineages in cotton growing areas of Pakistan.Sequence diversity in the DNA barcode region (mtCOI-5' was examined in 593 whiteflies from Pakistan to determine the number of whitefly species and their distributions in the cotton-growing areas of Punjab and Sindh provinces. These new records were integrated with another 173 barcode sequences for B. tabaci, most from India, to better understand regional whitefly diversity. The Barcode Index Number (BIN System assigned the 766 sequences to 15 BINs, including nine from Pakistan. Representative specimens of each Pakistan BIN were analyzed for mtCOI-3' to allow their assignment to one of the putative species in the B. tabaci complex recognized on the basis of sequence variation in this gene region. This analysis revealed the presence of Asia II 1, Middle East-Asia Minor 1, Asia 1, Asia II 5, Asia II 7, and a new lineage "Pakistan". The first two taxa were found in both Punjab and Sindh, but Asia 1 was only detected in Sindh, while Asia II 5, Asia II 7 and "Pakistan" were only present in Punjab. The haplotype networks showed that most haplotypes of Asia II 1, a species implicated in transmission of the cotton leaf curl virus, occurred in both India and Pakistan.DNA barcodes successfully discriminated cryptic species in B. tabaci complex. The dominant haplotypes in the B. tabaci complex were shared by India and Pakistan. Asia II 1 was previously restricted to Punjab, but is now the dominant lineage in southern Sindh; its southward spread may have serious implications for cotton plantations in this region.

  18. Design of a scanning gate microscope for mesoscopic electron systems in a cryogen-free dilution refrigerator.

    Science.gov (United States)

    Pelliccione, M; Sciambi, A; Bartel, J; Keller, A J; Goldhaber-Gordon, D

    2013-03-01

    We report on our design of a scanning gate microscope housed in a cryogen-free dilution refrigerator with a base temperature of 15 mK. The recent increase in efficiency of pulse tube cryocoolers has made cryogen-free systems popular in recent years. However, this new style of cryostat presents challenges for performing scanning probe measurements, mainly as a result of the vibrations introduced by the cryocooler. We demonstrate scanning with root-mean-square vibrations of 0.8 nm at 3 K and 2.1 nm at 15 mK in a 1 kHz bandwidth with our design. Using Coulomb blockade thermometry on a GaAs/AlGaAs gate-defined quantum dot, we demonstrate an electron temperature of 45 mK.

  19. A new scanning system for alpha decay events as calibration sources for range-energy relation in nuclear emulsion

    Energy Technology Data Exchange (ETDEWEB)

    Yoshida, J., E-mail: jyoshida@gifu-u.ac.jp; Kinbara, S.; Mishina, A.; Nakazawa, K.; Soe, M.K.; Theint, A.M.M.; Tint, K.T.

    2017-03-01

    A new scanning system named “Vertex picker” has been developed to rapid collect alpha decay events, which are calibration sources for the range-energy relation in nuclear emulsion. A computer-controlled optical microscope scans emulsion layers exhaustively, and a high-speed and high-resolution camera takes their micrographs. A dedicated image processing picks out vertex-like shapes. Practical operations of alpha decay search were demonstrated by emulsion sheets of the KEK-PS E373 experiment. Alpha decays of nearly 28 events were detected in eye-check work on a PC monitor per hour. This yield is nearly 20 times more effective than that by the conventional eye-scan method. The speed and quality is acceptable for the coming new experiment, J-PARC E07.

  20. A new scanning system for alpha decay events as calibration sources for range-energy relation in nuclear emulsion

    International Nuclear Information System (INIS)

    Yoshida, J.; Kinbara, S.; Mishina, A.; Nakazawa, K.; Soe, M.K.; Theint, A.M.M.; Tint, K.T.

    2017-01-01

    A new scanning system named “Vertex picker” has been developed to rapid collect alpha decay events, which are calibration sources for the range-energy relation in nuclear emulsion. A computer-controlled optical microscope scans emulsion layers exhaustively, and a high-speed and high-resolution camera takes their micrographs. A dedicated image processing picks out vertex-like shapes. Practical operations of alpha decay search were demonstrated by emulsion sheets of the KEK-PS E373 experiment. Alpha decays of nearly 28 events were detected in eye-check work on a PC monitor per hour. This yield is nearly 20 times more effective than that by the conventional eye-scan method. The speed and quality is acceptable for the coming new experiment, J-PARC E07.

  1. DNA barcoding of Japanese click beetles (Coleoptera, Elateridae).

    Science.gov (United States)

    Oba, Yuichi; Ôhira, Hitoo; Murase, Yukio; Moriyama, Akihiko; Kumazawa, Yoshinori

    2015-01-01

    Click beetles (Coleoptera: Elateridae) represent one of the largest groups of beetle insects. Some click beetles in larval form, known as wireworms, are destructive agricultural pests. Morphological identification of click beetles is generally difficult and requires taxonomic expertise. This study reports on the DNA barcoding of Japanese click beetles to enable their rapid and accurate identification. We collected and assembled 762 cytochrome oxidase subunit I barcode sequences from 275 species, which cover approximately 75% of the common species found on the Japanese main island, Honshu. This barcode library also contains 20 out of the 21 potential pest species recorded in Japan. Our analysis shows that most morphologically identified species form distinct phylogenetic clusters separated from each other by large molecular distances. This supports the general usefulness of the DNA barcoding approach for quick and reliable identification of Japanese elaterid species for environmental impact assessment, agricultural pest control, and biodiversity analysis. On the other hand, the taxonomic boundary in dozens of species did not agree with the boundary of barcode index numbers (a criterion for sequence-based species delimitation). These findings urge taxonomic reinvestigation of these mismatched taxa.

  2. DNA barcoding of Japanese click beetles (Coleoptera, Elateridae.

    Directory of Open Access Journals (Sweden)

    Yuichi Oba

    Full Text Available Click beetles (Coleoptera: Elateridae represent one of the largest groups of beetle insects. Some click beetles in larval form, known as wireworms, are destructive agricultural pests. Morphological identification of click beetles is generally difficult and requires taxonomic expertise. This study reports on the DNA barcoding of Japanese click beetles to enable their rapid and accurate identification. We collected and assembled 762 cytochrome oxidase subunit I barcode sequences from 275 species, which cover approximately 75% of the common species found on the Japanese main island, Honshu. This barcode library also contains 20 out of the 21 potential pest species recorded in Japan. Our analysis shows that most morphologically identified species form distinct phylogenetic clusters separated from each other by large molecular distances. This supports the general usefulness of the DNA barcoding approach for quick and reliable identification of Japanese elaterid species for environmental impact assessment, agricultural pest control, and biodiversity analysis. On the other hand, the taxonomic boundary in dozens of species did not agree with the boundary of barcode index numbers (a criterion for sequence-based species delimitation. These findings urge taxonomic reinvestigation of these mismatched taxa.

  3. Efficiency of ITS sequences for DNA barcoding in Passiflora (Passifloraceae).

    Science.gov (United States)

    Giudicelli, Giovanna Câmara; Mäder, Geraldo; de Freitas, Loreta Brandão

    2015-04-01

    DNA barcoding is a technique for discriminating and identifying species using short, variable, and standardized DNA regions. Here, we tested for the first time the performance of plastid and nuclear regions as DNA barcodes in Passiflora. This genus is a largely variable, with more than 900 species of high ecological, commercial, and ornamental importance. We analyzed 1034 accessions of 222 species representing the four subgenera of Passiflora and evaluated the effectiveness of five plastid regions and three nuclear datasets currently employed as DNA barcodes in plants using barcoding gap, applied similarity-, and tree-based methods. The plastid regions were able to identify less than 45% of species, whereas the nuclear datasets were efficient for more than 50% using "best match" and "best close match" methods of TaxonDNA software. All subgenera presented higher interspecific pairwise distances and did not fully overlap with the intraspecific distance, and similarity-based methods showed better results than tree-based methods. The nuclear ribosomal internal transcribed spacer 1 (ITS1) region presented a higher discrimination power than the other datasets and also showed other desirable characteristics as a DNA barcode for this genus. Therefore, we suggest that this region should be used as a starting point to identify Passiflora species.

  4. Efficiency of ITS Sequences for DNA Barcoding in Passiflora (Passifloraceae

    Directory of Open Access Journals (Sweden)

    Giovanna Câmara Giudicelli

    2015-04-01

    Full Text Available DNA barcoding is a technique for discriminating and identifying species using short, variable, and standardized DNA regions. Here, we tested for the first time the performance of plastid and nuclear regions as DNA barcodes in Passiflora. This genus is a largely variable, with more than 900 species of high ecological, commercial, and ornamental importance. We analyzed 1034 accessions of 222 species representing the four subgenera of Passiflora and evaluated the effectiveness of five plastid regions and three nuclear datasets currently employed as DNA barcodes in plants using barcoding gap, applied similarity-, and tree-based methods. The plastid regions were able to identify less than 45% of species, whereas the nuclear datasets were efficient for more than 50% using “best match” and “best close match” methods of TaxonDNA software. All subgenera presented higher interspecific pairwise distances and did not fully overlap with the intraspecific distance, and similarity-based methods showed better results than tree-based methods. The nuclear ribosomal internal transcribed spacer 1 (ITS1 region presented a higher discrimination power than the other datasets and also showed other desirable characteristics as a DNA barcode for this genus. Therefore, we suggest that this region should be used as a starting point to identify Passiflora species.

  5. DNA Barcoding of Japanese Click Beetles (Coleoptera, Elateridae)

    Science.gov (United States)

    Oba, Yuichi; Ôhira, Hitoo; Murase, Yukio; Moriyama, Akihiko; Kumazawa, Yoshinori

    2015-01-01

    Click beetles (Coleoptera: Elateridae) represent one of the largest groups of beetle insects. Some click beetles in larval form, known as wireworms, are destructive agricultural pests. Morphological identification of click beetles is generally difficult and requires taxonomic expertise. This study reports on the DNA barcoding of Japanese click beetles to enable their rapid and accurate identification. We collected and assembled 762 cytochrome oxidase subunit I barcode sequences from 275 species, which cover approximately 75% of the common species found on the Japanese main island, Honshu. This barcode library also contains 20 out of the 21 potential pest species recorded in Japan. Our analysis shows that most morphologically identified species form distinct phylogenetic clusters separated from each other by large molecular distances. This supports the general usefulness of the DNA barcoding approach for quick and reliable identification of Japanese elaterid species for environmental impact assessment, agricultural pest control, and biodiversity analysis. On the other hand, the taxonomic boundary in dozens of species did not agree with the boundary of barcode index numbers (a criterion for sequence-based species delimitation). These findings urge taxonomic reinvestigation of these mismatched taxa. PMID:25636000

  6. Fabrication of Cantilevered Tip-on-Aperture Probe for Enhancing Resolution of Scanning Near-Field Optical Microscopy System

    Science.gov (United States)

    Chang, Won-Seok; Jeong, Mun Seok; Kim, Dae-Chul; Kim, Jeongyong

    2007-08-01

    The scanning near-field optical microscopy (SNOM) system achieves a resolution beyond the diffraction limit of the conventional optical microscopy system by subwavelength aperture probe scanning. The problem is that the light throughput decreases very markedly with decreasing aperture diameter. Apertureless scanning near-field optical microscopes obtain a much better resolution by concentrating light field near the tip apex. However, far-field illumination by a focused laser beam generates a large background scattering signal. Both disadvantages are overcome using the tip-on-aperture (TOA) approach presented in previous works. In this study, the fabrication of a cantilevered tip for SNOM and scanning force microscopy (SFM) has been described. The nano-probes are batch-fabricated on a silicon wafer. The Si3N4 has excellent optical transparent characteristics, higher Young’s modulus and yield strength so that it should provide a better probe for SNOM and SFM. For this purpose, a Si3N4 thin film was deposited using low-pressure chemical vapor deposition (LPCVD). To form the aperture and TOA in the probe, we applied focused ion beam (FIB) machining at the end of the sharpened tip. For verification of the efficiency of the micromachined TOA probes, numerical analysis using the finite-difference time domain (FDTD) analysis and experimental measurement using an inverted microscope based the SNOM system were performed.

  7. 78 FR 13006 - New Intelligent Mail Package Barcode Standards To Enhance Package Visibility; Opportunity for...

    Science.gov (United States)

    2013-02-26

    ... POSTAL SERVICE 39 CFR Part 111 New Intelligent Mail Package Barcode Standards To Enhance Package... comments. SUMMARY: The Postal Service is exploring the advisability of requiring the use of Intelligent Mail[supreg] package barcodes (IMpb) or unique tracking Intelligent Mail barcodes (IMb TM ) on all...

  8. Development of electronic barcodes for use in plant pathology and functional genomics.

    Science.gov (United States)

    Kumagai, Monto H; Miller, Philip

    2006-06-01

    We have developed a novel 'electronic barcode' system that uses radio frequency identification (RFID) tags, cell phones, and portable computers to link phenotypic, environmental, and genomic data. We describe a secure, inexpensive system to record and retrieve data from plant samples. It utilizes RFID tags, computers, PDAs, and cell phones to link, record, and retrieve positional, and functional genomic data. Our results suggest that RFID tags can be used in functional genomic screens to record information that is involved in plant development or disease.

  9. Animal house stock control based on bar-coded cage labels.

    Science.gov (United States)

    Wootton, R

    1985-10-01

    In an animal house serving the needs of a large research institute, a regular inventory of the animals in stock is a considerable help towards effective management of the facility. In particular, advising the licence-holders of what animals are being held in their name and reminding them of the costs involved is a valuable exercise. The introduction of a computerized system of stock control, based on bar-coded cage labels, is described. The system has proved economical to operate, accurate, and can be run by persons without computer expertise.

  10. Development of the scanning system to detect the concentration of oxy- and deoxy-hemoglobin by tracking the head

    Science.gov (United States)

    Ko, Woo Seok; Darwish, Naser; Gratton, Enrico; Kim, Soo Hyun

    2005-04-01

    We measure the concentration of oxy-, deoxy- and total hemoglobin by using the frequency-domain, near-infrared spectroscopy(NIRS) scanner. It is a non-invasive instrument that can provide real-time measurements of the changes in concentration. It can provide a diagnostic tool for the study of the brain in infants and children. However, it is difficult to apply it to the baby's head because of the contact of the probe on the soft baby's head. Therefore, we suggest the NIRS scanning system that can track the baby' head movement and detect NIRS parameters on the same position of the head. This system has three key components. The vision system performs the pattern matching for tracking the head by using the normalized cross correlation method with the target as a cross-line on the head during the diagnostic experiment. We can use the change of the position of the baby's head to re-target the light by the scanning system that uses four laser sources, a wavelength selector, and an x-y scanner. The detector system analyzes the resulting signal from the head using the diffusion model. Therefore, NIRS scanning system can provide a diagnostic tool to measure the changes of the NIRS parameters for the study of the baby's brain.

  11. Scanning gamma camera

    International Nuclear Information System (INIS)

    Engdahl, L.W.; Batter, J.F. Jr.; Stout, K.J.

    1977-01-01

    A scanning system for a gamma camera providing for the overlapping of adjacent scan paths is described. A collimator mask having tapered edges provides for a graduated reduction in intensity of radiation received by a detector thereof, the reduction in intensity being graduated in a direction normal to the scanning path to provide a blending of images of adjacent scan paths. 31 claims, 15 figures

  12. Methodology for converting CT medical images to MCNP input using the Scan2MCNP system

    International Nuclear Information System (INIS)

    Boia, L.S.; Silva, A.X.; Cardoso, S.C.; Castro, R.C.

    2009-01-01

    This paper develops a methodology for the application software Scan2MCNP, which converts medical images DICOM (Digital Imaging and Communications in Medicine) for MCNP input file. The Scan2MCNP handles, processes and executes the medical images generated by CT equipment, allowing the user to perform the selection and parameterization of the study area in question (tissues and organs). The details of these worked in medical imaging software, therefore, will be converted to equity to the process of language analysis of MCNP radiation transport, through the generation of a code input file. With this file, it is possible to simulate any situation/problem of the type and level of radiation to the proposed treatment chosen by the medical staff responsible for the patient. Within a computational process oriented, the Scan2MCNP can contribute along with other software that has been used recently in the area of medical physics, to improve the levels of quality and precision of radiotherapy treatments. In this work, medical images DICOM of the Anthropomorphic Rando Phantom were used in the process of analysis and development of computer software Scan2MCNP. However, it emphasized that the software is successful in certain situations, depending upon a number of auxiliary procedures and software that can help in the solution of certain problems in the natural radiation treatment or express agility by the team of medical physics. (author)

  13. Measurement of stray neutron doses inside the treatment room from a proton pencil beam scanning system

    Czech Academy of Sciences Publication Activity Database

    Mojzeszek, N.; Farah, J.; Klodowska, M.; Ploc, Ondřej; Stolarczyk, L.; Waligorski, M. P. R.; Olko, P.

    2017-01-01

    Roč. 34, č. 2 (2017), s. 80-84 ISSN 1120-1797 Institutional support: RVO:61389005 Keywords : secondary neutrons * proton therapy * pencil beam scanning systtems * out-of-field doses * stray neutron doses * TEPC Subject RIV: FP - Other Medical Disciplines OBOR OECD: Radiology, nuclear medicine and medical imaging Impact factor: 1.990, year: 2016

  14. EchoScan: A new system to objectively assess peripheral hearing disorders

    Directory of Open Access Journals (Sweden)

    Thomas Venet

    2012-01-01

    Full Text Available Pure-tone air-conduction audiometry (PTA is the reference clinical test used in Europe and the United States to measure the extent of hearing loss. It is a subjective, behavioral test, which measures thresholds of hearing sensations and perceptions based on patient responses to frequency-specific pure-tone stimuli. PTA can detect hearing problems due to cochlear or retro-cochlear impairment, without identifying the source of the problem. In contrast, cubic distortion product otoacoustic emissions (DPOAEs detect inner-ear dysfunctions, particularly those involving the outer hair cells sensitive to noise and ototoxicants. Recently, ototoxicants were shown to have an action on the central nuclei driving the middle-ear acoustic reflex. Therefore, a new device, called EchoScan, was conceived to collect and measure performance both in the middle- and inner-ear. Its originality: the use of a battery of DPOAE measurements associated with contra-lateral acoustic stimulation. Changes in DPOAE amplitude due to ageing and gender were incidentally detected and EchoScan was more sensitive than impedancemetry to detect the stapedial reflex. EchoScan can be used both in clinical investigations and in occupational medicine, especially for the auditory follow-up of people exposed to noise or ototoxic agents. EchoScan could be promising to assess early detection in programs to prevent hearing loss.

  15. |SE|S|AM|E| Barcode: NGS-oriented software for amplicon characterization--application to species and environmental barcoding.

    Science.gov (United States)

    Piry, S; Guivier, E; Realini, A; Martin, J-F

    2012-11-01

    Progress in NGS technologies has opened up new opportunities for characterizing biodiversity, both for individual specimen identification and for environmental barcoding. Although the amount of data available to biologist is increasing, user-friendly tools to facilitate data analysis have yet to be developed. Our aim, with |SE|S|AM|E| Barcode, is to provide such support through a unified platform. The sequences are analysed through a pipeline that (i) processes NGS amplicon runs, filtering markers and samples, (ii) builds reference libraries and finally (iii) identifies (barcodes) the sequences in each amplicon from the reference library. We use a simulated data set for specimen identification and a recently published data set for environmental barcoding to validate the method. The results obtained are consistent with the expected characterizations (in silico and previously published, respectively). |SE|S|AM|E| Barcode and its documentation are freely available under the Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported Licence for Windows and Linux from http://www1.montpellier.inra.fr/CBGP/NGS/. © 2012 Blackwell Publishing Ltd.

  16. DNA Barcoding the Heliothinae (Lepidoptera: Noctuidae) of Australia and Utility of DNA Barcodes for Pest Identification in Helicoverpa and Relatives.

    Science.gov (United States)

    Mitchell, Andrew; Gopurenko, David

    2016-01-01

    Helicoverpa and Heliothis species include some of the world's most significant crop pests, causing billions of dollars of losses globally. As such, a number are regulated quarantine species. For quarantine agencies, the most crucial issue is distinguishing native species from exotics, yet even this task is often not feasible because of poorly known local faunas and the difficulties of identifying closely related species, especially the immature stages. DNA barcoding is a scalable molecular diagnostic method that could provide the solution to this problem, however there has been no large-scale test of the efficacy of DNA barcodes for identifying the Heliothinae of any region of the world to date. This study fills that gap by DNA barcoding the entire heliothine moth fauna of Australia, bar one rare species, and comparing results with existing public domain resources. We find that DNA barcodes provide robust discrimination of all of the major pest species sampled, but poor discrimination of Australian Heliocheilus species, and we discuss ways to improve the use of DNA barcodes for identification of pests.

  17. DNA Barcoding the Heliothinae (Lepidoptera: Noctuidae of Australia and Utility of DNA Barcodes for Pest Identification in Helicoverpa and Relatives.

    Directory of Open Access Journals (Sweden)

    Andrew Mitchell

    Full Text Available Helicoverpa and Heliothis species include some of the world's most significant crop pests, causing billions of dollars of losses globally. As such, a number are regulated quarantine species. For quarantine agencies, the most crucial issue is distinguishing native species from exotics, yet even this task is often not feasible because of poorly known local faunas and the difficulties of identifying closely related species, especially the immature stages. DNA barcoding is a scalable molecular diagnostic method that could provide the solution to this problem, however there has been no large-scale test of the efficacy of DNA barcodes for identifying the Heliothinae of any region of the world to date. This study fills that gap by DNA barcoding the entire heliothine moth fauna of Australia, bar one rare species, and comparing results with existing public domain resources. We find that DNA barcodes provide robust discrimination of all of the major pest species sampled, but poor discrimination of Australian Heliocheilus species, and we discuss ways to improve the use of DNA barcodes for identification of pests.

  18. Development of an efficient scanning and purging magnet system for IMRT with narrow high energy photon beams

    Science.gov (United States)

    Andreassen, Björn; Svensson, Roger; Holmberg, Rickard; Danared, Håkan; Brahme, Anders

    2009-12-01

    Due to the clinical advantages of Intensity Modulated Radiation Therapy (IMRT) high flexibility and accuracy in intensity modulated dose delivery is desirable to really maximize treatment outcome. Although it is possible to deliver IMRT by using broad beams in combination with dynamic multileaf collimation the process is rather time consuming and inefficient. By using narrow scanned high energy photon beams the treatment outcome can be improved, the treatment time reduced and accurate 3D in vivo dose delivery monitoring is possible by PET-CT based dose delivery imaging of photo nuclear reactions in human tissues. Narrow photon beams can be produced by directing a low emittance high energy electron beam on a thin target, and then cleaning the therapeutic photon beam from transmitted high energy electrons, and photon generated charged leptons, with a dedicated purging magnet placed directly downstream of the target. To have an effective scanning and purging magnet system the purging magnet should be placed immediately after the bremsstrahlung target to deflect the transmitted electrons to an efficient electron stopper. In the static electron stopper the electrons should be safely collected independent of the desired direction of the therapeutic scanned photon beam. The SID (Source to Isocenter Distance) should preferably be short while retaining the ability to scan over a large area on the patient and consequently there are severe requirements both on the strength and the geometry of the scanning and purging magnets. In the present study an efficient magnet configuration with a purging and scanning magnet assembly is developed for electron energies in the 50-75 MeV range and a SID of 75 cm. For a bremsstrahlung target of 3 mm Be these electron energies produce a photon beam of 25-17 mm FWHM (Full Width Half Maximum) at a SID of 75 cm. The magnet system was examined both in terms of the efficiency in scanning the narrow bremsstrahlung beam and the deflection of

  19. ANALYSIS OF THE POSSIBILITIES OF USING LOW-COST SCANNING SYSTEM IN 3D MODELING

    Directory of Open Access Journals (Sweden)

    M. Kedzierski

    2016-06-01

    Full Text Available The laser scanning technique is still a very popular and fast growing method of obtaining information on modeling 3D objects. The use of low-cost miniature scanners creates new opportunities for small objects of 3D modeling based on point clouds acquired from the scan. The same, the development of accuracy and methods of automatic processing of this data type is noticeable. The article presents methods of collecting raw datasets in the form of a point-cloud using a low-cost ground-based laser scanner FabScan. As part of the research work 3D scanner from an open source FabLab project was constructed. In addition, the results for the analysis of the geometry of the point clouds obtained by using a low-cost laser scanner were presented. Also, some analysis of collecting data of different structures (made of various materials such as: glass, wood, paper, gum, plastic, plaster, ceramics, stoneware clay etc. and of different shapes: oval and similar to oval and prism shaped have been done. The article presents two methods used for analysis: the first one - visual (general comparison between the 3D model and the real object and the second one - comparative method (comparison between measurements on models and scanned objects using the mean error of a single sample of observations. The analysis showed, that the low-budget ground-based laser scanner FabScan has difficulties with collecting data of non-oval objects. Items built of glass painted black also caused problems for the scanner. In addition, the more details scanned object contains, the lower the accuracy of the collected point-cloud is. Nevertheless, the accuracy of collected data (using oval-straight shaped objects is satisfactory. The accuracy, in this case, fluctuates between ± 0,4 mm and ± 1,0 mm whereas when using more detailed objects or a rectangular shaped prism the accuracy is much more lower, between 2,9 mm and ± 9,0 mm. Finally, the publication presents the possibility (for the

  20. Hyper-track selector nuclear emulsion readout system aimed at scanning an area of one thousand square meters

    Science.gov (United States)

    Yoshimoto, Masahiro; Nakano, Toshiyuki; Komatani, Ryosuke; Kawahara, Hiroaki

    2017-10-01

    Automatic nuclear emulsion readout systems have seen remarkable progress since the original idea was developed almost 40 years ago. After the success of its full application to a large-scale neutrino experiment, OPERA, a much faster readout system, the hyper-track selector (HTS), has been developed. HTS, which has an extremely wide-field objective lens, reached a scanning speed of 4700 cm^2/h, which is nearly 100 times faster than the previous system and therefore strongly promotes many new experimental projects. We will describe the concept, specifications, system structure, and achieved performance in this paper.

  1. SCANS (Shipping Cask ANalysis System) a microcomputer-based analysis system for shipping cask design review: User's manual to Version 3a. Volume 1, Revision 2

    International Nuclear Information System (INIS)

    Mok, G.C.; Thomas, G.R.; Gerhard, M.A.; Trummer, D.J.; Johnson, G.L.

    1998-03-01

    SCANS (Shipping Cask ANalysis System) is a microcomputer-based system of computer programs and databases developed at the Lawrence Livermore National Laboratory (LLNL) for evaluating safety analysis reports on spent fuel shipping casks. SCANS is an easy-to-use system that calculates the global response to impact loads, pressure loads and thermal conditions, providing reviewers with an independent check on analyses submitted by licensees. SCANS is based on microcomputers compatible with the IBM-PC family of computers. The system is composed of a series of menus, input programs, cask analysis programs, and output display programs. All data is entered through fill-in-the-blank input screens that contain descriptive data requests. Analysis options are based on regulatory cases described in the Code of Federal Regulations 10 CFR 71 and Regulatory Guides published by the US Nuclear Regulatory Commission in 1977 and 1978

  2. Motor racing, tobacco company sponsorship, barcodes and alibi marketing.

    Science.gov (United States)

    Grant-Braham, Bruce; Britton, John

    2012-11-01

    Sponsorship of Formula One (F1) motor racing, which has been used as an indirect medium of tobacco advertising for several decades, was prohibited by the 2005 European Union Tobacco Advertising Directive. Most F1 tobacco sponsorship of motor racing in the EU has since ceased, with the exception of the Scuderia Ferrari team, which continues to be funded by Philip Morris. In 2007, the Marlboro logo on Ferrari cars and other race regalia was replaced by an evolving 'barcode' design, which Ferrari later claimed was part of the livery of the car, and not a Marlboro advertisement. To determine whether the 'barcode' graphics used by Ferrari represent 'alibi' Marlboro advertising. Academic and grey literature, and online tobacco industry document archives, were searched using terms relevant to tobacco marketing and motorsport. Tobacco sponsorship of F1 motor racing began in 1968, and Philip Morris has sponsored F1 teams since 1972. Phillip Morris first used a 'barcode' design, comprising red vertical parallel lines below the word Marlboro on the British Racing Motors F1 car in 1972. Vertical or horizontal 'barcode' designs have been used in this way, latterly without the word Marlboro, ever since. The modern 'barcode' logos occupied the same position on cars and drivers' clothing as conventional Marlboro logos in the past. The shared use of red colour by Marlboro and Ferrari is also recognised by Philip Morris as a means of promoting brand association between Marlboro and Ferrari. The Ferrari 'barcode' designs are alibi Marlboro logos and hence constitute advertising prohibited by the 2005 EU Tobacco Advertising Directive.

  3. Barcoding Atlantic Canada's mesopelagic and upper bathypelagic marine fishes.

    Directory of Open Access Journals (Sweden)

    Ellen L Kenchington

    Full Text Available DNA barcode sequences were developed from 557 mesopelagic and upper bathypelagic teleost specimens collected in waters off Atlantic Canada. Confident morphological identifications were available for 366 specimens, of 118 species and 93 genera, which yielded 328 haplotypes. Five of the species were novel to the Barcode of Life Database (BOLD. Most of the 118 species conformed to expectations of monophyly and the presence of a "barcode gap", though some known weaknesses in existing taxonomy were confirmed and a deficiency in published keys was revealed. Of the specimens for which no firm morphological identification was available, 156 were successfully identified to species, and a further 11 to genus, using their barcode sequences and a combination of distance- and character-based methods. The remaining 24 specimens were from species for which no reference barcode is yet available or else ones confused by apparent misidentification of publicly available sequences in BOLD. Addition of the new sequences to those previously in BOLD contributed support to recent taxonomic revisions of Chiasmodon and Poromitra, while it also revealed 18 cases of potential cryptic speciation. Most of the latter appear to result from genetic divergence among populations in different ocean basins, while the general lack of strong horizontal environmental gradients within the deep sea has allowed morphology to be conserved. Other examples of divergence appear to distinguish individuals living under the sub-tropical gyre of the North Atlantic from those under that ocean's sub-polar gyre. In contrast, the available sequences for two myctophid species, Benthosema glaciale and Notoscopelus elongatus, showed genetic structuring on finer geographic scales. The observed structure was not consistent with recent suggestions that "resident" populations of myctophids can maintain allopatry despite the mixing of ocean waters. Rather, it indicates that the very rapid speciation

  4. DNA barcoding as a screening tool for cryptic diversity

    DEFF Research Database (Denmark)

    Huemer, Peter; Karsholt, Ole; Mutanen, Marko

    2014-01-01

    oxidase 1) gene and/or distinct barcode gaps to the nearest neighbor support species status for all examined nominal taxa. However, in 8 taxa we observed deep splits with a maximum intraspecific barcode divergence beyond a threshold of 3%, thus indicating possible cryptic diversity. The taxonomy...... of these taxa has to be re-assessed in the future. We investigated one such deep split in Caryocolum amaurella (Hering, 1924) and found it in congruence with yet unrecognized diagnostic morphological characters and specific host-plants. The integrative species delineation leads to the description of Caryocolum...

  5. DNA barcoding as a means for identifying medicinal plants of Pakistan

    International Nuclear Information System (INIS)

    Schori, M.; Showalter, A.M.

    2011-01-01

    DNA barcoding involves the generation of DNA sequencing data from particular genetic regions in an organism and the use of these sequence data to identify or 'barcode' that organism and distinguish it from other species. Here, DNA barcoding is being used to identify several medicinal plants found in Pakistan and distinguished them from other similar species. Several challenges to the successful implementation of plant DNA barcoding are presented and discussed. Despite these challenges, DNA barcoding has the potential to uniquely identify medicinal plants and provide quality control and standardization of the plant material supplied to the pharmaceutical industry. (author)

  6. DNA barcoding reveals a cryptic nemertean invasion in Atlantic and Mediterranean waters

    Science.gov (United States)

    Fernández-Álvarez, Fernando Ángel; Machordom, Annie

    2013-09-01

    For several groups, like nemerteans, morphology-based identification is a hard discipline, but DNA barcoding may help non-experts in the identification process. In this study, DNA barcoding is used to reveal the cryptic invasion of Pacific Cephalothrix cf. simula into Atlantic and Mediterranean coasts. Although DNA barcoding is a promising method for the identification of Nemertea, only 6 % of the known number of nemertean species is currently associated with a correct DNA barcode. Therefore, additional morphological and molecular studies are necessary to advance the utility of DNA barcoding in the characterisation of possible nemertean alien invasions.

  7. Standard symbols for books, journals, and newspapers through the use of barcode

    Directory of Open Access Journals (Sweden)

    T. A. Titiova

    2014-01-01

    Full Text Available Barcode is serves for automatic identification. Barcode information is provided by dark and light strips of different weight. Recently, barcode has been mostly used in different industries e.g. in distributive trade to accelerate the paper-flow and keep or seek the objects in stores, as well as in medical, credit and other cards, and in libraries. Printing matter has another barcode. Like all goods it passes through the cash registers. Therefore, ISBN and SSN international standards ought to be changed for EAN standards. For the first three positions of barcode the indicia 978 for books and 977 for journals are introduced.

  8. Development of Kinematic 3D Laser Scanning System for Indoor Mapping and As-Built BIM Using Constrained SLAM

    Directory of Open Access Journals (Sweden)

    Jaehoon Jung

    2015-10-01

    Full Text Available The growing interest and use of indoor mapping is driving a demand for improved data-acquisition facility, efficiency and productivity in the era of the Building Information Model (BIM. The conventional static laser scanning method suffers from some limitations on its operability in complex indoor environments, due to the presence of occlusions. Full scanning of indoor spaces without loss of information requires that surveyors change the scanner position many times, which incurs extra work for registration of each scanned point cloud. Alternatively, a kinematic 3D laser scanning system, proposed herein, uses line-feature-based Simultaneous Localization and Mapping (SLAM technique for continuous mapping. Moreover, to reduce the uncertainty of line-feature extraction, we incorporated constrained adjustment based on an assumption made with respect to typical indoor environments: that the main structures are formed of parallel or orthogonal line features. The superiority of the proposed constrained adjustment is its reduction for uncertainties of the adjusted lines, leading to successful data association process. In the present study, kinematic scanning with and without constrained adjustment were comparatively evaluated in two test sites, and the results confirmed the effectiveness of the proposed system. The accuracy of the 3D mapping result was additionally evaluated by comparison with the reference points acquired by a total station: the Euclidean average distance error was 0.034 m for the seminar room and 0.043 m for the corridor, which satisfied the error tolerance for point cloud acquisition (0.051 m according to the guidelines of the General Services Administration for BIM accuracy.

  9. Development of kinematic 3D laser scanning system for indoor mapping and as-built BIM using constrained SLAM.

    Science.gov (United States)

    Jung, Jaehoon; Yoon, Sanghyun; Ju, Sungha; Heo, Joon

    2015-10-16

    The growing interest and use of indoor mapping is driving a demand for improved data-acquisition facility, efficiency and productivity in the era of the Building Information Model (BIM). The conventional static laser scanning method suffers from some limitations on its operability in complex indoor environments, due to the presence of occlusions. Full scanning of indoor spaces without loss of information requires that surveyors change the scanner position many times, which incurs extra work for registration of each scanned point cloud. Alternatively, a kinematic 3D laser scanning system, proposed herein, uses line-feature-based Simultaneous Localization and Mapping (SLAM) technique for continuous mapping. Moreover, to reduce the uncertainty of line-feature extraction, we incorporated constrained adjustment based on an assumption made with respect to typical indoor environments: that the main structures are formed of parallel or orthogonal line features. The superiority of the proposed constrained adjustment is its reduction for uncertainties of the adjusted lines, leading to successful data association process. In the present study, kinematic scanning with and without constrained adjustment were comparatively evaluated in two test sites, and the results confirmed the effectiveness of the proposed system. The accuracy of the 3D mapping result was additionally evaluated by comparison with the reference points acquired by a total station: the Euclidean average distance error was 0.034 m for the seminar room and 0.043 m for the corridor, which satisfied the error tolerance for point cloud acquisition (0.051 m) according to the guidelines of the General Services Administration for BIM accuracy.

  10. Scanning Electron Microscopy of Nonconductive Specimens at Critical Energies in a Cathode Lens System

    Czech Academy of Sciences Publication Activity Database

    Frank, Luděk; Zadražil, Martin; Müllerová, Ilona

    2001-01-01

    Roč. 23, č. 1 (2001), s. 36-50 ISSN 0161-0457 R&D Projects: GA ČR GA202/96/0961; GA ČR GA202/99/0008 Institutional research plan: CEZ:AV0Z2065902 Keywords : scanning electron microscopy * specimen charging * nonconductive specimens Subject RIV: JA - Electronics ; Optoelectronics, Electrical Engineering Impact factor: 0.389, year: 2001

  11. The Dentin Tubule System: A Replica and Scanning Electron Microscope Study.

    Science.gov (United States)

    1978-06-20

    this laboratory to prepare soft and calci fied tissues for scanning and transmission electron microscopy. The resolution, magnification range and...several intertubular connections , originally examined at a magnification of 17,000 times (Fig. 7). In addition to the omnipresent lateral tubule...branches , and the ease of penetration therein of endodontic reagents from the pulp. Intratubular network throughout the dentin may be a route of intra

  12. Wide area scanning system and carbon microbeams at the external microbeam facility of the INFN LABEC laboratory in Florence

    Energy Technology Data Exchange (ETDEWEB)

    Giuntini, L. [Istituto Nazionale di Fisica Nucleare (INFN), Sezione di Firenze, Via Sansone 1, I-50019 Sesto Fiorentino, Firenze (Italy); Dipartimento di Fisica e Astronomia, Università di Firenze, Via Sansone 1, I-50019 Sesto Fiorentino, Firenze (Italy); Massi, M. [Istituto Nazionale di Fisica Nucleare (INFN), Sezione di Firenze, Via Sansone 1, I-50019 Sesto Fiorentino, Firenze (Italy); Calusi, S. [Istituto Nazionale di Fisica Nucleare (INFN), Sezione di Firenze, Via Sansone 1, I-50019 Sesto Fiorentino, Firenze (Italy); Dipartimento di Fisica e Astronomia, Università di Firenze, Via Sansone 1, I-50019 Sesto Fiorentino, Firenze (Italy); Castelli, L. [Istituto Nazionale di Fisica Nucleare (INFN), Sezione di Firenze, Via Sansone 1, I-50019 Sesto Fiorentino, Firenze (Italy); Carraresi, L. [Istituto Nazionale di Fisica Nucleare (INFN), Sezione di Firenze, Via Sansone 1, I-50019 Sesto Fiorentino, Firenze (Italy); Dipartimento di Fisica e Astronomia, Università di Firenze, Via Sansone 1, I-50019 Sesto Fiorentino, Firenze (Italy); Fedi, M.E.; Gelli, N. [Istituto Nazionale di Fisica Nucleare (INFN), Sezione di Firenze, Via Sansone 1, I-50019 Sesto Fiorentino, Firenze (Italy); Liccioli, L.; Mandò, P.A.; Mazzinghi, A. [Istituto Nazionale di Fisica Nucleare (INFN), Sezione di Firenze, Via Sansone 1, I-50019 Sesto Fiorentino, Firenze (Italy); Dipartimento di Fisica e Astronomia, Università di Firenze, Via Sansone 1, I-50019 Sesto Fiorentino, Firenze (Italy); Palla, L. [INFN, Sezione di Pisa and Università di Pisa, Largo B. Pontecorvo 3, I-56127 Pisa (Italy); Romano, F.P. [Consiglio Nazionale delle Ricerche (CNR), Istituto per i Beni Archeologici e Monumentali (IBAM), Via Biblioteca, 4, 95124 Catania (Italy); Istituto Nazionale di Fisica Nucleare (INFN), LNS, Via S.Sofia 62, 95125 Catania (Italy); and others

    2015-04-01

    Recently, developments have been made to the external scanning microbeam of INFN-LABEC laboratory in Florence. A new system for mechanical sample scanning was implemented. This system allows us to acquire large maps (up to 20 × 20 cm{sup 2}), of great interest in the Cultural Heritage field. In parallel, the possibility of using carbon microbeams for experiments, such as, for example, ion beam modification of materials and MeV Secondary Ion Mass Spectrometry, has been investigated. As a test application, Particle Induced X-ray Emission with carbon microbeams has been performed on a lapis lazuli stone. First results for both wide area imaging and external carbon microbeams are briefly reported.

  13. Sensitivity Analyses on Aging Elements for Wolsong Unit 1 Using RELAP/CANDU-SCAN Coupled Code System

    Energy Technology Data Exchange (ETDEWEB)

    Kim, Man Woong; Lee, Sang Kyu; Kim, Hyun Koon; Lee, Jong In [Korea Institute of Nuclear Safety, Taejon (Korea, Republic of); Hwang, Su Hyun [FNC Technology Co. Ltd, Taejon (Korea, Republic of)

    2006-07-01

    Wolsong Unit 1 is in operating for 23 years since 1983. As a result of long-term operation, structure, systems and components (SSC) have in general suffered from aging. However, as up to now, the researches for aging are only focused on the individual system, component or structure. Meanwhile, a comprehensive safety analysis considering integrated aging effects for a nuclear power plant (NPP) has not been performed so far. Therefore, in this study, the aging effects on the safety analysis for Wolsong Unit 1 were identified and assessed using RELAP/CANDU-SCAN coupled code system to present the technology basis applied to continuing operation.

  14. Inductively coupled plasma-atomic emission spectroscopy: a computer controlled, scanning monochromator system for the rapid determination of the elements

    Energy Technology Data Exchange (ETDEWEB)

    Floyd, M.A.

    1980-03-01

    A computer controlled, scanning monochromator system specifically designed for the rapid, sequential determination of the elements is described. The monochromator is combined with an inductively coupled plasma excitation source so that elements at major, minor, trace, and ultratrace levels may be determined, in sequence, without changing experimental parameters other than the spectral line observed. A number of distinctive features not found in previously described versions are incorporated into the system here described. Performance characteristics of the entire system and several analytical applications are discussed.

  15. Reliable DNA barcoding performance proved for species and island populations of comoran squamate reptiles.

    Directory of Open Access Journals (Sweden)

    Oliver Hawlitschek

    Full Text Available In the past decade, DNA barcoding became increasingly common as a method for species identification in biodiversity inventories and related studies. However, mainly due to technical obstacles, squamate reptiles have been the target of few barcoding studies. In this article, we present the results of a DNA barcoding study of squamates of the Comoros archipelago, a poorly studied group of oceanic islands close to and mostly colonized from Madagascar. The barcoding dataset presented here includes 27 of the 29 currently recognized squamate species of the Comoros, including 17 of the 18 endemic species. Some species considered endemic to the Comoros according to current taxonomy were found to cluster with non-Comoran lineages, probably due to poorly resolved taxonomy. All other species for which more than one barcode was obtained corresponded to distinct clusters useful for species identification by barcoding. In most species, even island populations could be distinguished using barcoding. Two cryptic species were identified using the DNA barcoding approach. The obtained barcoding topology, a Bayesian tree based on COI sequences of 5 genera, was compared with available multigene topologies, and in 3 cases, major incongruences between the two topologies became evident. Three of the multigene studies were initiated after initial screening of a preliminary version of the barcoding dataset presented here. We conclude that in the case of the squamates of the Comoros Islands, DNA barcoding has proven a very useful and efficient way of detecting isolated populations and promising starting points for subsequent research.

  16. DNA barcoding in the cycadales: testing the potential of proposed barcoding markers for species identification of cycads.

    Directory of Open Access Journals (Sweden)

    Chodon Sass

    Full Text Available Barcodes are short segments of DNA that can be used to uniquely identify an unknown specimen to species, particularly when diagnostic morphological features are absent. These sequences could offer a new forensic tool in plant and animal conservation-especially for endangered species such as members of the Cycadales. Ideally, barcodes could be used to positively identify illegally obtained material even in cases where diagnostic features have been purposefully removed or to release confiscated organisms into the proper breeding population. In order to be useful, a DNA barcode sequence must not only easily PCR amplify with universal or near-universal reaction conditions and primers, but also contain enough variation to generate unique identifiers at either the species or population levels. Chloroplast regions suggested by the Plant Working Group of the Consortium for the Barcode of Life (CBoL, and two alternatives, the chloroplast psbA-trnH intergenic spacer and the nuclear ribosomal internal transcribed spacer (nrITS, were tested for their utility in generating unique identifiers for members of the Cycadales. Ease of amplification and sequence generation with universal primers and reaction conditions was determined for each of the seven proposed markers. While none of the proposed markers provided unique identifiers for all species tested, nrITS showed the most promise in terms of variability, although sequencing difficulties remain a drawback. We suggest a workflow for DNA barcoding, including database generation and management, which will ultimately be necessary if we are to succeed in establishing a universal DNA barcode for plants.

  17. A novel fast-scanning microwave heterodyne radiometer system for electron cyclotron emission measurements in the HT-7 superconducting tokamak

    International Nuclear Information System (INIS)

    Zhang, S.Y.; Wan, Y.X.; Xie, J.K.; Luo, J.R.; Li, J.G.; Kuang, G.L.; Gao, X.; Zhang, X.D.; Wan, B.N.; Wang, K.J.; Mao, J.S.; Gong, X.Z.; Qin, P.J.

    2000-01-01

    Two sets of fast-scanning microwave heterodyne radiometer receiver systems employing backward-wave oscillators in the 78-118 GHz and 118-178 GHz ranges were developed for electron cyclotron emission measurements (ECE) on the HT-7 superconducting tokamak. The double-sideband radiometer in the 78-118 GHz range measures 16 ECE frequency points with a scanning period of 0.65 ms. The novel design of the 2 mm fast-scanning heterodyne radiometer in the 118-178 GHz range enables the unique system to measure 48 ECE frequency points in 0.65 ms periodically. The plasma profile consistency in reproducible ohmic plasmas was used to relatively calibrate each channel by changing the toroidal magnetic field shot-by-shot. The absolute temperature value was obtained by a comparison with the results from the soft x-ray pulse height analysis measurements and Thomson scattering system. A preliminary temperature profile measurement result in pellet injection plasma is presented. (author)

  18. ConoSurf: Open-source 3D scanning system based on a conoscopic holography device for acquiring surgical surfaces.

    Science.gov (United States)

    Brudfors, Mikael; García-Vázquez, Verónica; Sesé-Lucio, Begoña; Marinetto, Eugenio; Desco, Manuel; Pascau, Javier

    2017-09-01

    A difficulty in computer-assisted interventions is acquiring the patient's anatomy intraoperatively. Standard modalities have several limitations: low image quality (ultrasound), radiation exposure (computed tomography) or high costs (magnetic resonance imaging). An alternative approach uses a tracked pointer; however, the pointer causes tissue deformation and requires sterilizing. Recent proposals, utilizing a tracked conoscopic holography device, have shown promising results without the previously mentioned drawbacks. We have developed an open-source software system that enables real-time surface scanning using a conoscopic holography device and a wide variety of tracking systems, integrated into pre-existing and well-supported software solutions. The mean target registration error of point measurements was 1.46 mm. For a quick guidance scan, surface reconstruction improved the surface registration error compared with point-set registration. We have presented a system enabling real-time surface scanning using a tracked conoscopic holography device. Results show that it can be useful for acquiring the patient's anatomy during surgery. © 2016 The Authors. The International Journal of Medical Robotics and Computer Assisted Surgery Published by John Wiley & Sons Ltd.

  19. ConoSurf: Open‐source 3D scanning system based on a conoscopic holography device for acquiring surgical surfaces

    Science.gov (United States)

    Brudfors, Mikael; García‐Vázquez, Verónica; Sesé‐Lucio, Begoña; Marinetto, Eugenio; Desco, Manuel

    2016-01-01

    Abstract Background A difficulty in computer‐assisted interventions is acquiring the patient's anatomy intraoperatively. Standard modalities have several limitations: low image quality (ultrasound), radiation exposure (computed tomography) or high costs (magnetic resonance imaging). An alternative approach uses a tracked pointer; however, the pointer causes tissue deformation and requires sterilizing. Recent proposals, utilizing a tracked conoscopic holography device, have shown promising results without the previously mentioned drawbacks. Methods We have developed an open‐source software system that enables real‐time surface scanning using a conoscopic holography device and a wide variety of tracking systems, integrated into pre‐existing and well‐supported software solutions. Results The mean target registration error of point measurements was 1.46 mm. For a quick guidance scan, surface reconstruction improved the surface registration error compared with point‐set registration. Conclusions We have presented a system enabling real‐time surface scanning using a tracked conoscopic holography device. Results show that it can be useful for acquiring the patient's anatomy during surgery. PMID:27868345

  20. SU-F-T-156: Monte Carlo Simulation Using TOPAS for Synchrotron Based Proton Discrete Spot Scanning System

    Energy Technology Data Exchange (ETDEWEB)

    Moskvin, V; Pirlepesov, F; Tsiamas, P; Axente, M; Lukose, R; Zhao, L; Farr, J [St. Jude Children’s Hospital, Memphis, TN (United States); Shin, J [Massachusetts General Hospital, Brookline, MA (United States)

    2016-06-15

    Purpose: This study provides an overview of the design and commissioning of the Monte Carlo (MC) model of the spot-scanning proton therapy nozzle and its implementation for the patient plan simulation. Methods: The Hitachi PROBEAT V scanning nozzle was simulated based on vendor specifications using the TOPAS extension of Geant4 code. FLUKA MC simulation was also utilized to provide supporting data for the main simulation. Validation of the MC model was performed using vendor provided data and measurements collected during acceptance/commissioning of the proton therapy machine. Actual patient plans using CT based treatment geometry were simulated and compared to the dose distributions produced by the treatment planning system (Varian Eclipse 13.6), and patient quality assurance measurements. In-house MATLAB scripts are used for converting DICOM data into TOPAS input files. Results: Comparison analysis of integrated depth doses (IDDs), therapeutic ranges (R90), and spot shape/sizes at different distances from the isocenter, indicate good agreement between MC and measurements. R90 agreement is within 0.15 mm across all energy tunes. IDDs and spot shapes/sizes differences are within statistical error of simulation (less than 1.5%). The MC simulated data, validated with physical measurements, were used for the commissioning of the treatment planning system. Patient geometry simulations were conducted based on the Eclipse produced DICOM plans. Conclusion: The treatment nozzle and standard option beam model were implemented in the TOPAS framework to simulate a highly conformal discrete spot-scanning proton beam system.

  1. Management of radiation sources and personal dosimeters based on the optical identification using two-dimensional barcode

    International Nuclear Information System (INIS)

    Takao, Hideaki; Yoshida, Masahiro; Kaneko, Mamoru; Miura, Miwa; Hayashida, Rika; Okumura, Yutaka; Matsuda, Naoki

    2006-01-01

    For accurate and efficient radiation safety management in facilities using radioisotopes, two-dimensional barcode (2-DC) was applied to the optical identification of radiation sources and personal dosimeters. The mobile personal computer (PC) equipped with a barcode reader, which has imported inventory records from the pre-existing radiation management system, enabled us to finish inventory procedures for 170 2-DC-labelled radiation sources in as short as 20min by one person. Identification of 270 personal dosimeters in their monthly replacement procedures also successfully completed within 20 min by incorporating pre-labeled 2-DC to PC installed with inventory records of dosimeters and radiation workers. As equipments and software required for 2-DC are affordable, easy to operate, and potentially expandable, the introduction of 2-DC system may help to establish practically higher level of radiation management. (author)

  2. Fiber optic light collection system for scanning-tunneling-microscope-induced light emission.

    Science.gov (United States)

    Watkins, Neil J; Long, James P; Kafafi, Zakya H; Mäkinen, Antti J

    2007-05-01

    We report a compact light collection scheme suitable for retrofitting a scanning tunneling microscope (STM) for STM-induced light emission experiments. The approach uses a pair of optical fibers with large core diameters and high numerical apertures to maximize light collection efficiency and to moderate the mechanical precision required for alignment. Bench tests indicate that efficiency reduction is almost entirely due to reflective losses at the fiber ends, while losses due to fiber misalignment have virtually been eliminated. Photon-map imaging with nanometer features is demonstrated on a stepped Au(111) surface with signal rates exceeding 10(4) counts/s.

  3. Characterization of photovoltage evolution of ZnO films using a scanning Kelvin probe system

    International Nuclear Information System (INIS)

    Li, W.; Wu, C.W.; Qin, W.G.; Wang, G.C.; Lu, S.Q.; Dong, X.J.; Dong, H.B.; Sun, Q.L.

    2009-01-01

    Work function (WF) and surface photovoltage evolution of films can be measured using the Kelvin probe technique, and further analysis of the photoelectronic behavior can provide information on the energy level structure. In this paper, a theoretical analysis to measure surface photovoltage using Kelvin probe technique is presented. Based on this analysis, the surface photovoltage and its time-resolved evolution process as well as the energy level structure of ZnO films are determined using a scanning Kelvin probe. The present study therefore provides a simple and practical methodology for the characterization of the electronic behavior of films.

  4. A retrospective approach to testing the DNA barcoding method.

    Directory of Open Access Journals (Sweden)

    David G Chapple

    Full Text Available A decade ago, DNA barcoding was proposed as a standardised method for identifying existing species and speeding the discovery of new species. Yet, despite its numerous successes across a range of taxa, its frequent failures have brought into question its accuracy as a short-cut taxonomic method. We use a retrospective approach, applying the method to the classification of New Zealand skinks as it stood in 1977 (primarily based upon morphological characters, and compare it to the current taxonomy reached using both morphological and molecular approaches. For the 1977 dataset, DNA barcoding had moderate-high success in identifying specimens (78-98%, and correctly flagging specimens that have since been confirmed as distinct taxa (77-100%. But most matching methods failed to detect the species complexes that were present in 1977. For the current dataset, there was moderate-high success in identifying specimens (53-99%. For both datasets, the capacity to discover new species was dependent on the methodological approach used. Species delimitation in New Zealand skinks was hindered by the absence of either a local or global barcoding gap, a result of recent speciation events and hybridisation. Whilst DNA barcoding is potentially useful for specimen identification and species discovery in New Zealand skinks, its error rate could hinder the progress of documenting biodiversity in this group. We suggest that integrated taxonomic approaches are more effective at discovering and describing biodiversity.

  5. Identification of Meconopsis species by a DNA barcode sequence ...

    African Journals Online (AJOL)

    Deoxyribonucleic acid (DNA) barcoding is a novel technology that uses a standard DNA sequence to facilitate species identification. Species identification is necessary for the authentication of traditional plant based medicines. Although a consensus has not been agreed regarding which DNA sequences can be used as ...

  6. DNA Barcodes of Lepidoptera Reared from Yawan, Papua New Guinea

    Czech Academy of Sciences Publication Activity Database

    Miller, S. E.; Rosati, M. E.; Gewa, B.; Novotný, Vojtěch; Weiblen, G. D.; Herbert, P. D. N.

    2015-01-01

    Roč. 117, č. 2 (2015), s. 247-250 ISSN 0013-8797 R&D Projects: GA ČR(CZ) GA14-04258S Institutional support: RVO:60077344 Keywords : DNA barcodes * Lepidoptera * Papua New Guinea Subject RIV: EH - Ecology, Behaviour Impact factor: 0.593, year: 2015

  7. Identification of rays through DNA barcoding: an application for ecologists.

    Directory of Open Access Journals (Sweden)

    Florencia Cerutti-Pereyra

    Full Text Available DNA barcoding potentially offers scientists who are not expert taxonomists a powerful tool to support the accuracy of field studies involving taxa that are diverse and difficult to identify. The taxonomy of rays has received reasonable attention in Australia, although the fauna in remote locations such as Ningaloo Reef, Western Australia is poorly studied and the identification of some species in the field is problematic. Here, we report an application of DNA-barcoding to the identification of 16 species (from 10 genera of tropical rays as part of an ecological study. Analysis of the dataset combined across all samples grouped sequences into clearly defined operational taxonomic units, with two conspicuous exceptions: the Neotrygon kuhlii species complex and the Aetobatus species complex. In the field, the group that presented the most difficulties for identification was the spotted whiptail rays, referred to as the 'uarnak' complex. Two sets of problems limited the successful application of DNA barcoding: (1 the presence of cryptic species, species complexes with unresolved taxonomic status and intra-specific geographical variation, and (2 insufficient numbers of entries in online databases that have been verified taxonomically, and the presence of lodged sequences in databases with inconsistent names. Nevertheless, we demonstrate the potential of the DNA barcoding approach to confirm field identifications and to highlight species complexes where taxonomic uncertainty might confound ecological data.

  8. Indigenous species barcode database improves the identification of zooplankton.

    Directory of Open Access Journals (Sweden)

    Jianghua Yang

    Full Text Available Incompleteness and inaccuracy of DNA barcode databases is considered an important hindrance to the use of metabarcoding in biodiversity analysis of zooplankton at the species-level. Species barcoding by Sanger sequencing is inefficient for organisms with small body sizes, such as zooplankton. Here mitochondrial cytochrome c oxidase I (COI fragment barcodes from 910 freshwater zooplankton specimens (87 morphospecies were recovered by a high-throughput sequencing platform, Ion Torrent PGM. Intraspecific divergence of most zooplanktons was < 5%, except Branchionus leydign (Rotifer, 14.3%, Trichocerca elongate (Rotifer, 11.5%, Lecane bulla (Rotifer, 15.9%, Synchaeta oblonga (Rotifer, 5.95% and Schmackeria forbesi (Copepod, 6.5%. Metabarcoding data of 28 environmental samples from Lake Tai were annotated by both an indigenous database and NCBI Genbank database. The indigenous database improved the taxonomic assignment of metabarcoding of zooplankton. Most zooplankton (81% with barcode sequences in the indigenous database were identified by metabarcoding monitoring. Furthermore, the frequency and distribution of zooplankton were also consistent between metabarcoding and morphology identification. Overall, the indigenous database improved the taxonomic assignment of zooplankton.

  9. Are mini DNA-barcodes sufficiently informative to resolve species ...

    Indian Academy of Sciences (India)

    Since then, the COI has been effec- tively used as 'universal DNA barcode' in several animal groups such as birds, butterflies, amphibians and fishes. ∗. For correspondence. E-mail: gravikanth@atree.org. (Hebert et al. 2003; Gu et al. 2011). However, in plants, the. COI was found to be ineffective in discriminating the taxa,.

  10. Application of Environmental Scanning Electron Microscope-Nanomanipulation System on Spheroplast Yeast Cells Surface Observation.

    Science.gov (United States)

    Rad, Maryam Alsadat; Ahmad, Mohd Ridzuan; Nakajima, Masahiro; Kojima, Seiji; Homma, Michio; Fukuda, Toshio

    2017-01-01

    The preparation and observations of spheroplast W303 cells are described with Environmental Scanning Electron Microscope (ESEM). The spheroplasting conversion was successfully confirmed qualitatively, by the evaluation of the morphological change between the normal W303 cells and the spheroplast W303 cells, and quantitatively, by determining the spheroplast conversion percentage based on the OD 800 absorbance data. From the optical microscope observations as expected, the normal cells had an oval shape whereas spheroplast cells resemble a spherical shape. This was also confirmed under four different mediums, that is, yeast peptone-dextrose (YPD), sterile water, sorbitol-EDTA-sodium citrate buffer (SCE), and sorbitol-Tris-Hcl-CaCl 2 (CaS). It was also observed that the SCE and CaS mediums had a higher number of spheroplast cells as compared to the YPD and sterile water mediums. The OD 800 absorbance data also showed that the whole W303 cells were fully converted to the spheroplast cells after about 15 minutes. The observations of the normal and the spheroplast W303 cells were then performed under an environmental scanning electron microscope (ESEM). The normal cells showed a smooth cell surface whereas the spheroplast cells had a bleb-like surface after the loss of its integrity when removing the cell wall.

  11. Clinical neurological, electrophysiological, and cerebral CT scan findings in systemic lupus erythematosus.

    Science.gov (United States)

    Omdal, R; Selseth, B; Kløw, N E; Husby, G; Mellgren, S I

    1989-01-01

    Thirty SLE patients underwent clinical neurological examination, electrophysiological studies, cerebral computer tomographic (CT) scans, and blood sampling. Nineteen patients (63%) had clinical neuropsychiatric and 10 patients (33%) had clinical neuromuscular manifestations. Migrainous headache affecting 11 patients (37%) was the most prevalent clinical manifestation. Electrophysiological testing revealed abnormal electroencephalography in 10 patients (33%). Abnormal electromyography and nerve conduction velocity were found in 13 (43%) and 7 (24%) patients respectively. Abnormal visual evoked response was detected in 2 patients. Cerebral CT scans displayed cerebral atrophy in 20 patients (71%), while 6 patients (21%) had cerebral infractions. Disease activity assessed by two different tests revealed a higher prevalence of cerebral infarctions, classical migraine, muscular weakness, and pathological electromyography and nerve conduction velocity in the higher disease activity groups. Cerebral infarctions were only found among anti-Ro negative patients, but apart from this, no significant association could be found between coagulopathy, circulating immune complexes, cryoglobulins, routine immunological tests, medication, and any clinical, electrophysiological or cerebral CT pathology.

  12. DNA Barcoding of the parasitoid wasp subfamily Doryctinae (Hymenoptera: Braconidae) from Chamela, Mexico

    Science.gov (United States)

    Gutiérrez-Arellano, Daniela; Gutiérrez-Arellano, Claudia Renata

    2015-01-01

    Abstract Background and aims. The Doryctinae is a considerably diverse, poorly studied group of parasitoid wasps and one of the most diverse subfamilies within Braconidae. Taxonomic knowledge of this group remains highly incomplete, specially in the tropics. In Mexico, it has been reported as the subfamily with the highest number of recorded genera. A preliminary Barcoding study carried out in the Chamela region, located near the Mexican pacific coast in Jalisco, identified 185 barcoding species of Dorytinae assigned to 19 identified doryctine genera. This work updates the later study, representing a three years effort to assess the species richness of this subfamily for the Chamela region. Materials and methods. Ten collecting field trips of 5 to 10 days each were carried out from June 2009 to May 2011. A 2% divergence criterion using the BIN system implemented in BOLD was followed in order to establish species boundaries among the specimens that were collected. Results and conclusions. A total of 961 specimens were collected, from which 883 COI sequences were obtained. The sequences generated corresponded to 289 barcoding species and 30 identified genera. The most speciose genera were Heterospilus Haliday (170 spp.), Ecphylus Förster (19 spp.), Allorhogas Gahan (15 spp.) and Callihormius Ashmead (14 spp.). Addition of previously collected material increased the diversity of the subfamily in the region to 34 genera and 290 species. Paraphyly of Heterospilus with respect to Neoheterospilus and Heterospathius was again recovered. Twenty new species and two new genera (Sabinita Belokobylskij, Zaldívar-Riverón et Martínez, Ficobolus Martínez, Belokobylskij et Zaldívar-Riverón) have been described so far from the material collected in this work. PMID:26023287

  13. DNA barcode assessment of Ceramiales (Rhodophyta) in the intertidal zone of the northwestern Yellow Sea

    Science.gov (United States)

    Du, Guoying; Wu, Feifei; Guo, Hao; Xue, Hongfan; Mao, Yunxiang

    2015-05-01

    A total of 142 specimens of Ceramiales (Rhodophyta) were collected each month from October 2011 to November 2012 in the intertidal zone of the northwestern Yellow Sea. These specimens covered 21 species, 14 genera, and four families. Cluster analyses show that the specimens had a high diversity for the three DNA markers, namely, partial large subunit rRNA gene (LSU), universal plastid amplicon (UPA), and partial mitochondrial cytochrome c oxidase subunit I gene (COI). No intraspecific divergence was found in our collection for these markers, except for a 1-3 bp divergence in the COI of Ceramium kondoi, Symphyocladia latiuscula, and Neosiphonia japonica. Because short DNA markers were used, the phylogenetic relationships of higher taxonomic levels were hard to evaluate with poor branch support. More than half species of our collection failed to find their matched sequences owing to shortage information of DNA barcodes for macroalgae in GenBank or BOLD (Barcode of Life Data) Systems. Three specimens were presumed as Heterosiphonia crispella by cluster analyses on DNA barcodes assisted by morphological identification, which was the first record in the investigated area, implying that it might be a cryptic or invasive species in the coastal area of northwestern Yellow Sea. In the neighbor-joining trees of all three DNA markers, Heterosiphonia japonica converged with Dasya spp. and was distant from the other Heterosiphonia spp., implying that H. japonica had affinities to the genus Dasya. The LSU and UPA markers amplified and sequenced easier than the COI marker across the Ceramiales species, but the COI had a higher ability to discriminate between species.

  14. Detection of delamination defects in plate type fuel elements applying an automated C-Scan ultrasonic system

    International Nuclear Information System (INIS)

    Katchadjian, P.; Desimone, C.; Ziobrowski, C.; Garcia, A.

    2002-01-01

    For the inspection of plate type fuel elements to be used in Research Nuclear Reactors it was applied an immersion pulse-echo ultrasonic technique. For that reason an automated movement system was implemented according to the axes X, Y and Z that allows to automate the test and to show the results obtained in format of C-Scan, facilitating the immediate identification of possible defects and making repetitive the inspection. In this work problems found during the laboratory tests and factors that difficult the inspection are commented. Also the results of C-Scans over UMo fuel elements with pattern defects are shown. Finally, the main characteristics of the transducer with the one the better results were obtained are detailed. (author)

  15. 77 FR 59941 - Prospective Grant of Exclusive License: Terahertz Scanning Systems for Cancer Pathology

    Science.gov (United States)

    2012-10-01

    ... Systems for Cancer Pathology AGENCY: National Institutes of Health, Public Health Service, HHS. ACTION... systems for cancer pathology. Upon the expiration or termination of the exclusive evaluation option...

  16. Forensic botany: species identification of botanical trace evidence using a multigene barcoding approach.

    Science.gov (United States)

    Ferri, Gianmarco; Alù, Milena; Corradini, Beatrice; Beduschi, Giovanni

    2009-09-01

    Forensic botany can provide significant supporting evidence during criminal investigations. However, it is still an underutilized field of investigation with its most common application limited to identifying specific as well as suspected illegal plants. The ubiquitous presence of plant species can be useful in forensics, but the absence of an accurate identification system remains the major obstacle to the present inability to routinely and correctly identify trace botanical evidence. Many plant materials cannot be identified and differentiated to the species level by traditional morphological characteristics when botanical specimens are degraded and lack physical features. By taking advantage of a universal barcode system, DNA sequencing, and other biomolecular techniques used routinely in forensic investigations, two chloroplast DNA regions were evaluated for their use as "barcoding" markers for plant identification in the field of forensics. We therefore investigated the forensic use of two non-coding plastid regions, psbA-trnH and trnL-trnF, to create a multimarker system for species identification that could be useful throughout the plant kingdom. The sequences from 63 plants belonging to our local flora were submitted and registered on the GenBank database. Sequence comparison to set up the level of identification (species, genus, or family) through Blast algorithms allowed us to assess the suitability of this method. The results confirmed the effectiveness of our botanic universal multimarker assay in forensic investigations.

  17. A Dynamic Data-Driven Framework for Biological Data Using 2D Barcodes

    Directory of Open Access Journals (Sweden)

    Hui Li

    2012-01-01

    Full Text Available Biology data is increasing exponentially from biological laboratories. It is a complicated problem for further processing the data. Processing computational data and data from biological laboratories manually may lead to potential errors in further analysis. In this paper, we proposed an efficient data-driven framework to inspect laboratory equipment and reduce impending failures. Our method takes advantage of the 2D barcode technology which can be installed on the specimen as a trigger for the data-driven system. For this end, we proposed a series of algorithms to speed up the data processing. The results show that the proposed system increases the system's scalability and flexibility. Also, it demonstrates the ability of linking a physical object with digital information to reduce the manual work related to experimental specimen. The characteristics such as high capacity of storage and data management of the 2D barcode technology provide a solution to collect experimental laboratory data in a quick and accurate fashion.

  18. Identification of echinoderms (Echinodermata) from an anchialine cave in Cozumel Island, Mexico, using DNA barcodes.

    Science.gov (United States)

    Bribiesca-Contreras, Guadalupe; Solís-Marín, Francisco A; Laguarda-Figueras, Alfredo; Zaldívar-Riverón, Alejandro

    2013-11-01

    The echinoderm species richness of the Aerolito de Paraiso anchialine cave, on Cozumel Island, in the Mexican Caribbean, is assessed on the basis of morphological and DNA barcoding data. We included specimens from this cave system and from different open sea areas, and employed two different approaches for species delineation based on DNA barcoding data: a 2% cox1 divergence and the general mixed Yule-coalescent (GMYC) approaches. We subsequently compared the results derived from these approaches with our morphospecies discrimination. A total of 188 cox1 sequences belonging to specimens of four echinoderm classes were examined. The 2% cox1 divergence and GMYC approaches recovered 78 and 70 putative species, respectively, 24 and 22 of which corresponded to specimens from the anchialine system. Of 26 echinoderm species identified in the cave system, seven appear to be endemic to it. Among these are Copidaster carvenicola Solís-Marín & Laguarda-Figueras, 2010, two morphologically distinctive, undescribed species belonging to Asterinides and Ophionereis and four probably cryptic undescribed species originally assigned to Amphipholis squamata (Delle Chiaje, 1839), Astropecten duplicatus Gray, 1840, Copidaster lymani (AH Clark, 1948) and Ophiothrix angulata (Say, 1825). Further research and protection of this particularly fragile ecosystem becomes urgent because construction of tourism developments is planned nearby. © 2013 John Wiley & Sons Ltd.

  19. Analyzing mosquito (Diptera: culicidae diversity in Pakistan by DNA barcoding.

    Directory of Open Access Journals (Sweden)

    Muhammad Ashfaq

    Full Text Available Although they are important disease vectors mosquito biodiversity in Pakistan is poorly known. Recent epidemics of dengue fever have revealed the need for more detailed understanding of the diversity and distributions of mosquito species in this region. DNA barcoding improves the accuracy of mosquito inventories because morphological differences between many species are subtle, leading to misidentifications.Sequence variation in the barcode region of the mitochondrial COI gene was used to identify mosquito species, reveal genetic diversity, and map the distribution of the dengue-vector species in Pakistan. Analysis of 1684 mosquitoes from 491 sites in Punjab and Khyber Pakhtunkhwa during 2010-2013 revealed 32 species with the assemblage dominated by Culex quinquefasciatus (61% of the collection. The genus Aedes (Stegomyia comprised 15% of the specimens, and was represented by six taxa with the two dengue vector species, Ae. albopictus and Ae. aegypti, dominant and broadly distributed. Anopheles made up another 6% of the catch with An. subpictus dominating. Barcode sequence divergence in conspecific specimens ranged from 0-2.4%, while congeneric species showed from 2.3-17.8% divergence. A global haplotype analysis of disease-vectors showed the presence of multiple haplotypes, although a single haplotype of each dengue-vector species was dominant in most countries. Geographic distribution of Ae. aegypti and Ae. albopictus showed the later species was dominant and found in both rural and urban environments.As the first DNA-based analysis of mosquitoes in Pakistan, this study has begun the construction of a barcode reference library for the mosquitoes of this region. Levels of genetic diversity varied among species. Because of its capacity to differentiate species, even those with subtle morphological differences, DNA barcoding aids accurate tracking of vector populations.

  20. Barcoding Queensland Fruit Flies (Bactrocera tryoni): impediments and improvements.

    Science.gov (United States)

    Blacket, Mark J; Semeraro, Linda; Malipatil, Mallik B

    2012-05-01

    Identification of adult fruit flies primarily involves microscopic examination of diagnostic morphological characters, while immature stages, such as larvae, can be more problematic. One of the Australia's most serious horticultural pests, the Queensland Fruit Fly (Bactrocera tryoni: Tephritidae), is of particular biosecurity/quarantine concern as the immature life stages occur within food produce and can be difficult to identify using morphological characteristics. DNA barcoding of the mitochondrial Cytochrome Oxidase I (COI) gene could be employed to increase the accuracy of fruit fly species identifications. In our study, we tested the utility of standard DNA barcoding techniques and found them to be problematic for Queensland Fruit Flies, which (i) possess a nuclear copy (a numt pseudogene) of the barcoding region of COI that can be co-amplified; and (ii) as in previous COI phylogenetic analyses closely related B. tryoni complex species appear polyphyletic. We found that the presence of a large deletion in the numt copy of COI allowed an alternative primer to be designed to only amplify the mitochondrial COI locus in tephritid fruit flies. Comparisons of alternative commonly utilized mitochondrial genes, Cytochrome Oxidase II and Cytochrome b, revealed a similar level of variation to COI; however, COI is the most informative for DNA barcoding, given the large number of sequences from other tephritid fruit fly species available for comparison. Adopting DNA barcoding for the identification of problematic fly specimens provides a powerful tool to distinguish serious quarantine fruit fly pests (Tephritidae) from endemic fly species of lesser concern. © 2012 Blackwell Publishing Ltd.

  1. Analyzing mosquito (Diptera: culicidae) diversity in Pakistan by DNA barcoding.

    Science.gov (United States)

    Ashfaq, Muhammad; Hebert, Paul D N; Mirza, Jawwad H; Khan, Arif M; Zafar, Yusuf; Mirza, M Sajjad

    2014-01-01

    Although they are important disease vectors mosquito biodiversity in Pakistan is poorly known. Recent epidemics of dengue fever have revealed the need for more detailed understanding of the diversity and distributions of mosquito species in this region. DNA barcoding improves the accuracy of mosquito inventories because morphological differences between many species are subtle, leading to misidentifications. Sequence variation in the barcode region of the mitochondrial COI gene was used to identify mosquito species, reveal genetic diversity, and map the distribution of the dengue-vector species in Pakistan. Analysis of 1684 mosquitoes from 491 sites in Punjab and Khyber Pakhtunkhwa during 2010-2013 revealed 32 species with the assemblage dominated by Culex quinquefasciatus (61% of the collection). The genus Aedes (Stegomyia) comprised 15% of the specimens, and was represented by six taxa with the two dengue vector species, Ae. albopictus and Ae. aegypti, dominant and broadly distributed. Anopheles made up another 6% of the catch with An. subpictus dominating. Barcode sequence divergence in conspecific specimens ranged from 0-2.4%, while congeneric species showed from 2.3-17.8% divergence. A global haplotype analysis of disease-vectors showed the presence of multiple haplotypes, although a single haplotype of each dengue-vector species was dominant in most countries. Geographic distribution of Ae. aegypti and Ae. albopictus showed the later species was dominant and found in both rural and urban environments. As the first DNA-based analysis of mosquitoes in Pakistan, this study has begun the construction of a barcode reference library for the mosquitoes of this region. Levels of genetic diversity varied among species. Because of its capacity to differentiate species, even those with subtle morphological differences, DNA barcoding aids accurate tracking of vector populations.

  2. Analyzing Mosquito (Diptera: Culicidae) Diversity in Pakistan by DNA Barcoding

    Science.gov (United States)

    Ashfaq, Muhammad; Hebert, Paul D. N.; Mirza, Jawwad H.; Khan, Arif M.; Zafar, Yusuf; Mirza, M. Sajjad

    2014-01-01

    Background Although they are important disease vectors mosquito biodiversity in Pakistan is poorly known. Recent epidemics of dengue fever have revealed the need for more detailed understanding of the diversity and distributions of mosquito species in this region. DNA barcoding improves the accuracy of mosquito inventories because morphological differences between many species are subtle, leading to misidentifications. Methodology/Principal Findings Sequence variation in the barcode region of the mitochondrial COI gene was used to identify mosquito species, reveal genetic diversity, and map the distribution of the dengue-vector species in Pakistan. Analysis of 1684 mosquitoes from 491 sites in Punjab and Khyber Pakhtunkhwa during 2010–2013 revealed 32 species with the assemblage dominated by Culex quinquefasciatus (61% of the collection). The genus Aedes (Stegomyia) comprised 15% of the specimens, and was represented by six taxa with the two dengue vector species, Ae. albopictus and Ae. aegypti, dominant and broadly distributed. Anopheles made up another 6% of the catch with An. subpictus dominating. Barcode sequence divergence in conspecific specimens ranged from 0–2.4%, while congeneric species showed from 2.3–17.8% divergence. A global haplotype analysis of disease-vectors showed the presence of multiple haplotypes, although a single haplotype of each dengue-vector species was dominant in most countries. Geographic distribution of Ae. aegypti and Ae. albopictus showed the later species was dominant and found in both rural and urban environments. Conclusions As the first DNA-based analysis of mosquitoes in Pakistan, this study has begun the construction of a barcode reference library for the mosquitoes of this region. Levels of genetic diversity varied among species. Because of its capacity to differentiate species, even those with subtle morphological differences, DNA barcoding aids accurate tracking of vector populations. PMID:24827460

  3. DNA barcoding of sigmodontine rodents: identifying wildlife reservoirs of zoonoses.

    Science.gov (United States)

    Müller, Lívia; Gonçalves, Gislene L; Cordeiro-Estrela, Pedro; Marinho, Jorge R; Althoff, Sérgio L; Testoni, André F; González, Enrique M; Freitas, Thales R O

    2013-01-01

    Species identification through DNA barcoding is a tool to be added to taxonomic procedures, once it has been validated. Applying barcoding techniques in public health would aid in the identification and correct delimitation of the distribution of rodents from the subfamily Sigmodontinae. These rodents are reservoirs of etiological agents of zoonoses including arenaviruses, hantaviruses, Chagas disease and leishmaniasis. In this study we compared distance-based and probabilistic phylogenetic inference methods to evaluate the performance of cytochrome c oxidase subunit I (COI) in sigmodontine identification. A total of 130 sequences from 21 field-trapped species (13 genera), mainly from southern Brazil, were generated and analyzed, together with 58 GenBank sequences (24 species; 10 genera). Preliminary analysis revealed a 9.5% rate of misidentifications in the field, mainly of juveniles, which were reclassified after examination of external morphological characters and chromosome numbers. Distance and model-based methods of tree reconstruction retrieved similar topologies and monophyly for most species. Kernel density estimation of the distance distribution showed a clear barcoding gap with overlapping of intraspecific and interspecific densities < 1% and 21 species with mean intraspecific distance < 2%. Five species that are reservoirs of hantaviruses could be identified through DNA barcodes. Additionally, we provide information for the description of a putative new species, as well as the first COI sequence of the recently described genus Drymoreomys. The data also indicated an expansion of the distribution of Calomys tener. We emphasize that DNA barcoding should be used in combination with other taxonomic and systematic procedures in an integrative framework and based on properly identified museum collections, to improve identification procedures, especially in epidemiological surveillance and ecological assessments.

  4. DNA barcode detects high genetic structure within neotropical bird species.

    Directory of Open Access Journals (Sweden)

    Erika Sendra Tavares

    Full Text Available BACKGROUND: Towards lower latitudes the number of recognized species is not only higher, but also phylogeographic subdivision within species is more pronounced. Moreover, new genetically isolated populations are often described in recent phylogenies of Neotropical birds suggesting that the number of species in the region is underestimated. Previous COI barcoding of Argentinean bird species showed more complex patterns of regional divergence in the Neotropical than in the North American avifauna. METHODS AND FINDINGS: Here we analyzed 1,431 samples from 561 different species to extend the Neotropical bird barcode survey to lower latitudes, and detected even higher geographic structure within species than reported previously. About 93% (520 of the species were identified correctly from their DNA barcodes. The remaining 41 species were not monophyletic in their COI sequences because they shared barcode sequences with closely related species (N = 21 or contained very divergent clusters suggestive of putative new species embedded within the gene tree (N = 20. Deep intraspecific divergences overlapping with among-species differences were detected in 48 species, often with samples from large geographic areas and several including multiple subspecies. This strong population genetic structure often coincided with breaks between different ecoregions or areas of endemism. CONCLUSIONS: The taxonomic uncertainty associated with the high incidence of non-monophyletic species and discovery of putative species obscures studies of historical patterns of species diversification in the Neotropical region. We showed that COI barcodes are a valuable tool to indicate which taxa would benefit from more extensive taxonomic revisions with multilocus approaches. Moreover, our results support hypotheses that the megadiversity of birds in the region is associated with multiple geographic processes starting well before the Quaternary and extending to more recent

  5. a Real-Time Earthquake Moment Tensor Scanning Code for the Antelope System (brtt, Inc)

    Science.gov (United States)

    Macpherson, K. A.; Ruppert, N. A.; Freymueller, J. T.; Lindquist, K.; Harvey, D.; Dreger, D. S.; Lombard, P. N.; Guilhem, A.

    2015-12-01

    While all seismic observatories routinely determine hypocentral location and local magnitude within a few minutes of an earthquake's occurrence, the ability to estimate seismic moment and sense of slip in a similar time frame is less widespread. This is unfortunate, because moment and mechanism are critical parameters for rapid hazard assessment; for larger events, moment magnitude is more reliable due to the tendency of local magnitude to saturate, and certain mechanisms such as off-shore thrust events might indicate earthquakes with tsunamigenic potential. In order to increase access to this capability, we have developed a continuous moment tensor scanning code for Antelope, the ubiquitous open-architecture seismic acquisition and processing software in use around the world. The scanning code, which uses an algorithm that has previously been employed for real-time monitoring at the University of California, Berkeley, is able to produce full moment tensor solutions for moderate events from regional seismic data. The algorithm monitors a grid of potential sources by continuously cross-correlating pre-computed synthetic seismograms with long-period recordings from a sparse network of broad-band stations. The code package consists of 3 modules. One module is used to create a monitoring grid by constructing source-receiver geometry, calling a frequency-wavenumber code to produce synthetics, and computing the generalized linear inverse of the array of synthetics. There is a real-time scanning module that correlates streaming data with pre-inverted synthetics, monitors the variance reduction, and writes the moment tensor solution to a database if an earthquake detection occurs. Finally, there is an 'off-line' module that is very similar to the real-time scanner, with the exception that it utilizes pre-recorded data stored in Antelope databases and is useful for testing purposes or for quickly producing moment tensor catalogs for long time series. The code is open source

  6. Circularly polarized light emission in scanning tunneling microscopy of magnetic systems

    International Nuclear Information System (INIS)

    Apell, S.P.; Penn, D.R.; Johansson, P.

    2000-01-01

    Light is produced when a scanning tunneling microscope is used to probe a metal surface. Recent experiments on cobalt utilizing a tungsten tip found that the light is circularly polarized; the sense of circular polarization depends on the direction of the sample magnetization, and the degree of polarization is of order 10%. This raises the possibility of constructing a magnetic microscope with very good spatial resolution. We present a theory of this effect for iron and cobalt and find a degree of polarization of order 0.1%. This is in disagreement with the experiments on cobalt as well as previous theoretical work which found order of magnitude agreement with the experimental results. However, a recent experiment on iron showed 0.0±2%. We predict that the use of a silver tip would increase the degree of circular polarization for a range of photon energies

  7. Species-specific identification from incomplete sampling: applying DNA barcodes to monitoring invasive solanum plants.

    Science.gov (United States)

    Zhang, Wei; Fan, Xiaohong; Zhu, Shuifang; Zhao, Hong; Fu, Lianzhong

    2013-01-01

    Comprehensive sampling is crucial to DNA barcoding, but it is rarely performed because materials are usually unavailable. In practice, only a few rather than all species of a genus are required to be identified. Thus identification of a given species using a limited sample is of great importance in current application of DNA barcodes. Here, we selected 70 individuals representing 48 species from each major lineage of Solanum, one of the most species-rich genera of seed plants, to explore whether DNA barcodes can provide reliable specific-species discrimination in the context of incomplete sampling. Chloroplast genes ndhF and trnS-trnG and the nuclear gene waxy, the commonly used markers in Solanum phylogeny, were selected as the supplementary barcodes. The tree-building and modified barcode gap methods were employed to assess species resolution. The results showed that four Solanum species of quarantine concern could be successfully identified through the two-step barcoding sampling strategy. In addition, discrepancies between nuclear and cpDNA barcodes in some samples demonstrated the ability to discriminate hybrid species, and highlights the necessity of using barcode regions with different modes of inheritance. We conclude that efficient phylogenetic markers are good candidates as the supplementary barcodes in a given taxonomic group. Critically, we hypothesized that a specific-species could be identified from a phylogenetic framework using incomplete sampling-through this, DNA barcoding will greatly benefit the current fields of its application.

  8. Use of multimedia messaging system (MMS) by junior doctors for scan image transmission in neurosurgery.

    Science.gov (United States)

    Ling, Ji Min; Lim, Kim Zhuan; Ng, Wai Hoe

    2012-02-01

    Multimedia Messaging Service (MMS) is used by neurosurgical residents to transmit scan images to the attending neurosurgeon in conjunction with telephone consultation. This service has been well received by the attending neurosurgeons, who felt that after viewing scan images on their phones, they felt increased confidence in clinical decision making and that it reduced the need for recall to the hospital. The use of MMS can be extended to junior doctors making referrals from regional hospitals with no neurosurgical cover. This study aims to validate the competency of non-neurosurgically trained junior doctors in selecting optimal images to transmit via MMS to the attending neurosurgeon on call. Ten junior doctors with no formal neurosurgical training and five neurosurgical residents were interviewed. They were shown the full complement of images together with relevant clinical history and assessment. They were then asked to make the radiological diagnosis and then select two images for MMS transmission to the attending neurosurgeon that they thought would best aid the neurosurgeon in clinical decision making. The attending neurosurgeon was asked to comment, on each image, whether his management plan would differ if he was shown the entire series of the images. All the images chosen are deemed appropriate, and the decision made based on the MMS images would be similar if the entire series of images were available to the neurosurgeon. However, 7 of 10 junior doctors were unable to read magnetic resonance images of lumbar spine. There was no significant difference in the images chosen by the neurosurgical residents and the junior doctors. It is feasible and safe for junior doctors to utilize MMS to transmit computed tomographic images to a neurosurgeon while making an urgent referral. The images selected are representative of the disease pathology and facilitate clinical decision making. Copyright © 2012 Elsevier Inc. All rights reserved.

  9. Assessment of DNA replication in central nervous system by Laser Scanning Cytometry

    Science.gov (United States)

    Lenz, Dominik; Mosch, Birgit; Bocsi, Jozsef; Arendt, Thomas; Tárnok, Attila

    2004-07-01

    μIn neurons of patients with Alzheimers's disease (AD) signs of cell cycle re-entry as well as polyploidy have been reported1, 2, indicating that the entire or a part of the genome of the neurons is duplicated before its death but mitosis is not initiated so that the cellular DNA content remains tetraploid. It was concluded, that this imbalance is the direct cause of the neuronal loss in AD3. Manual counting of polyploidal cells is possible but time consuming and possibly statistically insufficient. The aim of this study was to develop an automated method that detects the neuronal DNA content abnormalities with Laser Scanning Cytometry (LSC).Frozen sections of formalin-fixed brain tissue of AD patients and control subjects were labelled with anti-cyclin B and anti-NeuN antibodies. Immunolabelling was performed using Cy5- and Cy2-conjugated secondary antibodies and biotin streptavidin or tyramid signal amplification. In the end sections of 20m thickness were incubated with propidium iodide (PI) (50μg/ml) and covered on slides. For analysis by the LSC PI was used as trigger. Cells identified as neurons by NeuN expression were analyzed for cyclin B expression. Per specimen data of at least 10,000 neurons were acquired. In the frozen brain sections an automated quantification of the amount of nuclear DNA is possible with LSC. The DNA ploidy as well as the cell cycle distribution can be analyzed. A high number of neurons can be scanned and the duration of measuring is shorter than a manual examination. The amount of DNA is sufficiently represented by the PI fluorescence to be able to distinguish between eu- and polyploid neurons.

  10. Identification of aphid (Hemiptera: Aphididae) species of economic importance in Kenya using DNA barcodes and PCR-RFLP-based approach.

    Science.gov (United States)

    Kinyanjui, G; Khamis, F M; Mohamed, S; Ombura, L O; Warigia, M; Ekesi, S

    2016-02-01

    Aphids are among pests of economic importance throughout the world. Together with transmitting plant viruses, aphids are capable of inflicting severe crop production losses. They also excrete honeydew that favours the growth of sooty mold which reduces the quality of vegetables and fruits and hence their market values. Rapid and accurate identification of aphids to the species level is a critical component in effective pest management and plant quarantine systems. Even though morphological taxonomy has made a tremendous impact on species-level identifications, polymorphism, morphological plasticity and immature stages are among the many challenges to accurate identification. In addition, their small size, presence of cryptic species and damaged specimens dictate the need for a strategy that will ensure timely and accurate identification. In this study, polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP)-based on mitochondrial cytochrome c oxidase subunit I gene and DNA barcoding were applied to identify different aphid species collected from different agro-ecological zones of Kenya. Three restriction enzymes RsaI, AluI and Hinf1 produced patterns that allowed unambiguous identification of the species except Aphis craccivora and Aphis fabae. Analyses of the barcode region indicated intraspecific and interspecific sequence divergences of 0.08 and 6.63%, respectively. DNA barcoding identified all species, including the morphologically indistinguishable A. craccivora and A. fabae and separated two subspecies of A. fabae. Based on these results, both PCR-RFLPs and DNA barcoding could provide quick and accurate tools for identification of aphid species within Aphididae subsequently aiding in effective pest management programmes and enhance plant quarantine systems.

  11. Serial cranial computed-tomography scans in children with leukemia given two different forms of central nervous system therapy

    International Nuclear Information System (INIS)

    Ochs, J.J.; Parvey, L.S.; Whitaker, J.N.; Bowman, W.P.; Ch'ien, L.; Campbell, M.; Coburn, T.

    1983-01-01

    Cranial computed tomography (CT) was used to estimate the frequency and permanence of brain abnormalities in 108 consecutive children with acute lymphoblastic leukemia (ALL). Fifty-five patients received cranial irradiation (1,800 rad) with intrathecal methotrexate (RT group) and 53 patients received intravenous and intrathecal methotrexate without irradiation (IVIT group). Continuation treatment included sequential drug pairs for the RT group and periodic IVIT methotrexate for the other group. After 12 to 24 months of serial evaluation, five (9%) of the 55 patients in the RT group have had CT scan abnormalities, compared to 10 (19%) of 52 in the IVIT group (p . 0.171). Fourteen of the 15 patients with CT scan abnormalities had focal or diffuse white-matter hypodensity; these have reverted to normal in most cases, reflecting a dynamic process. While such CT findings are of concern and may be an early indicator of central nervous system toxicity, this remains to be proven. Therapy should not be altered on the basis of abnormal CT scans alone but in the context of the entire clinical situation

  12. Cooperative scans

    NARCIS (Netherlands)

    M. Zukowski (Marcin); P.A. Boncz (Peter); M.L. Kersten (Martin)

    2004-01-01

    textabstractData mining, information retrieval and other application areas exhibit a query load with multiple concurrent queries touching a large fraction of a relation. This leads to individual query plans based on a table scan or large index scan. The implementation of this access path in most

  13. Micrometric precision of prosthetic dental crowns obtained by optical scanning and computer-aided designing/computer-aided manufacturing system

    Science.gov (United States)

    das Neves, Flávio Domingues; de Almeida Prado Naves Carneiro, Thiago; do Prado, Célio Jesus; Prudente, Marcel Santana; Zancopé, Karla; Davi, Letícia Resende; Mendonça, Gustavo; Soares, Carlos José

    2014-08-01

    The current study evaluated prosthetic dental crowns obtained by optical scanning and a computer-aided designing/computer-aided manufacturing system using micro-computed tomography to compare the marginal fit. The virtual models were obtained with four different scanning surfaces: typodont (T), regular impressions (RI), master casts (MC), and powdered master casts (PMC). Five virtual models were obtained for each group. For each model, a crown was designed on the software and milled from feldspathic ceramic blocks. Micro-CT images were obtained for marginal gap measurements and the data were statistically analyzed by one-way analysis of variance followed by Tukey's test. The mean vertical misfit was T=62.6±65.2 μm; MC=60.4±38.4 μm; PMC=58.1±38.0 μm, and RI=89.8±62.8 μm. Considering a percentage of vertical marginal gap of up to 75 μm, the results were T=71.5%, RI=49.2%, MC=69.6%, and PMC=71.2%. The percentages of horizontal overextension were T=8.5%, RI=0%, MC=0.8%, and PMC=3.8%. Based on the results, virtual model acquisition by scanning the typodont (simulated mouth) or MC, with or without powder, showed acceptable values for the marginal gap. The higher result of marginal gap of the RI group suggests that it is preferable to scan this directly from the mouth or from MC.

  14. Technology scan of future traveler information systems and applications in Georgia.

    Science.gov (United States)

    2013-10-01

    Statewide traveler information provided in Georgia through its NaviGAtor/5-1-1 system is : primarily based on Intelligent Transportation Systems (ITS) related to freeway traffic : management. The purpose of this study is to evaluate traveler informat...

  15. Using the T-scan III system to analyze occlusal function in mandibular reconstruction patients: A pilot study

    Directory of Open Access Journals (Sweden)

    Chao-Wei Liu

    2015-02-01

    Full Text Available Background: This study was designed to analyze the post-rehabilitation occlusal function of subjects treated with complex mandibular resection and subsequently rehabilitated with fibula osteoseptocutaneous flaps, dental implants, and fixed prostheses utilizing the T-scan system. Methods: Ten mandibular complex resection cases that adopted fibula osteoseptocutaneous flaps, dental implants, and fixed prostheses to reconstruct occlusal function were analyzed. The mandibular reconstructions were divided into three groups based on size: full mandibular reconstructions, mandibular reconstructions larger than half of the arch, and mandibular reconstructions smaller than half of the arch. The T-scan III system was used to measure maximum occlusal force, occlusal time, anterior-posterior as well as left-right occlusal force asymmetries, and anterior-posterior as well as left-right asymmetrical locations of occlusal centers. Results: Subjects with larger mandibular reconstructions and dental implants with fixed partial dentures demonstrated decreased average occlusal force; however, the difference did not reach the statistically significant level (p > 0.05. The most significant asymmetry of occlusal center location occurred among subjects with mandibular reconstructed areas larger than half of the mandibular arch. Conclusions: Comparison of the parameters of T-scan system used to analyze the occlusal function showed that the occlusal force was not an objective reference. Measurements of the location of the occlusal center appeared more repeatable, and were less affected by additional factors. The research results of this study showed that the size of a reconstruction did not affect the occlusal force after reconstruction and larger reconstructed areas did not decrease the average occlusal force. The most significant parameter was left and right asymmetry of the occlusion center (LROC and was measured in subjects with reconstruction areas larger than half

  16. Electronic structure of carbon nanotube systems measured with scanning tunneling microscopy

    Science.gov (United States)

    Hornbaker, Daniel Jay

    Carbon fullerenes are unusually structured molecules with robust mechanical and electronic properties. Their versatility is astounding; envisioned applications range from field emission displays to impregnated metal composites, battery storage media, and nanoelectronic devices. The combination of simple constituency, diverse behavior, and ease of fabrication makes these materials a cornerstone topic in current research. This thesis details scanning tunneling microscopy (STM) experiments investigating how carbon nanotube fullerenes interact with and couple to their local environment. Scanning tunneling microscopy continues to be a key method for characterizing fullerenes, particularly in regards to their electronic properties. The atomic scale nature of this technique makes it uniquely suited for observing individual molecules and determining correlations between locally measured electronic properties and the particular environment of the molecule. The primary subject of this study is single-wall carbon nanotubes (SWNTs), which were observed under various perturbative influences resulting in measurable changes in the electronic structure. Additionally, fullerene heterostructures formed by the encapsulation of C60 molecules within the hollow interiors of SWNTs were characterized for the first time with STM. These novel macromolecules (dubbed "peapods") demonstrate the potential for custom engineering the properties of fullerene materials. Measurements indicate that the properties of individual nanotubes depend sensitively on local interactions. In particular, pronounced changes in electronic behavior are observed in nanotubes exhibiting mechanical distortion, interacting with extrinsic materials (including other nanotubes), and possessing intrinsic defects in the atomic lattice. In fullerene peapods, while no discernable change in the atomic ordering of the encapsulating nanotubes was evident, the presence of interior C60 molecules has a dramatic effect on the

  17. Electro interstitial scan system: assessment of 10 years of research and development

    Directory of Open Access Journals (Sweden)

    Maarek A

    2012-03-01

    Full Text Available Albert MaarekResearch and Development, LD Technology, Miami, FL, USABackground: Ten years of research and development have allowed an understanding of how the electro interstitial scan (EIS works and what its clinical applications may be.Materials and methods: The EIS is a galvanic skin response device. The measurements are performed by electrical stimulation of the post sympathetic cholinergic fiber with weak DC current and voltage 1.28V applied during 2 minutes and in bipolar mode.Current scientific knowledge: EIS electrical measurements are related to: (1 the concentration of free chloride ions in the interstitial fluid, which affects the transfer of electrical current and the ratio intensity/voltage; (2 the morphology of the interstitial fluid, which is related to the electrical dispersion calculated from the Cole equation (α parameter; (3 electrical stimulation, which causes a change in sweat rate at the passive electrodes – post sympathetic cholinergic fiber electrical stimulation appears to be responsible for activating M2 receptors, which regulate nitric oxide (NO production in the endothelial cell and cause vasodilation and a released sweat response; and (4 the electrochemical redox reactions (electrolysis of the released sweat on electrodes, which are different on the bulk of the metal electrodes (O2 + [4H+] + [4e-] and on the Ag/AgCl disposable electrodes (AgCl precipitation.Results: For each of the EIS clinical results, various explanations were posited, such as: (1 electrical stimulation of the postsympathetic cholinergic fiber-activating NO production in the endothelial cell, which causes vasodilation and a released sweat response (diabetes detection; (2 estimation of interstitial fluid's acid–base balance, which is reflected in an electrochemical reaction on the bulk of the electrodes through the released sweat (prostate cancer detection; (3 estimation of cerebral interstitial fluid chloride ions (detection of ADHD in

  18. Extrinsic Parameter Calibration for Line Scanning Cameras on Ground Vehicles with Navigation Systems Using a Calibration Pattern

    Directory of Open Access Journals (Sweden)

    Alexander Wendel

    2017-10-01

    Full Text Available Line scanning cameras, which capture only a single line of pixels, have been increasingly used in ground based mobile or robotic platforms. In applications where it is advantageous to directly georeference the camera data to world coordinates, an accurate estimate of the camera’s 6D pose is required. This paper focuses on the common case where a mobile platform is equipped with a rigidly mounted line scanning camera, whose pose is unknown, and a navigation system providing vehicle body pose estimates. We propose a novel method that estimates the camera’s pose relative to the navigation system. The approach involves imaging and manually labelling a calibration pattern with distinctly identifiable points, triangulating these points from camera and navigation system data and reprojecting them in order to compute a likelihood, which is maximised to estimate the 6D camera pose. Additionally, a Markov Chain Monte Carlo (MCMC algorithm is used to estimate the uncertainty of the offset. Tested on two different platforms, the method was able to estimate the pose to within 0.06 m/1.05 ∘ and 0.18 m/2.39 ∘ . We also propose several approaches to displaying and interpreting the 6D results in a human readable way.

  19. An Online Solution of LiDAR Scan Matching Aided Inertial Navigation System for Indoor Mobile Mapping

    Directory of Open Access Journals (Sweden)

    Xiaoji Niu

    2017-01-01

    Full Text Available Multisensors (LiDAR/IMU/CAMERA integrated Simultaneous Location and Mapping (SLAM technology for navigation and mobile mapping in a GNSS-denied environment, such as indoor areas, dense forests, or urban canyons, becomes a promising solution. An online (real-time version of such system can extremely extend its applications, especially for indoor mobile mapping. However, the real-time response issue of multisensors is a big challenge for an online SLAM system, due to the different sampling frequencies and processing time of different algorithms. In this paper, an online Extended Kalman Filter (EKF integrated algorithm of LiDAR scan matching and IMU mechanization for Unmanned Ground Vehicle (UGV indoor navigation system is introduced. Since LiDAR scan matching is considerably more time consuming than the IMU mechanism, the real-time synchronous issue is solved via a one-step-error-state-transition method in EKF. Stationary and dynamic field tests had been performed using a UGV platform along typical corridor of office building. Compared to the traditional sequential postprocessed EKF algorithm, the proposed method can significantly mitigate the time delay of navigation outputs under the premise of guaranteeing the positioning accuracy, which can be used as an online navigation solution for indoor mobile mapping.

  20. CO-REGISTRATION OF DSMs GENERATED BY UAV AND TERRESTRIAL LASER SCANNING SYSTEMS

    Directory of Open Access Journals (Sweden)

    R. A. Persad

    2016-06-01

    Full Text Available An approach for the co-registration of Digital Surface Models (DSMs derived from Unmanned Aerial Vehicles (UAVs and Terrestrial Laser Scanners (TLS is proposed. Specifically, a wavelet-based feature descriptor for matching surface keypoints on the 2.5D DSMs is developed. DSMs are useful in wide-scope of various applications such as 3D building modelling and reconstruction, cultural heritage, urban and environmental planning, aircraft navigation/path routing, accident and crime scene reconstruction, mining as well as, topographic map revision and change detection. For these listed applications, it is not uncommon that there will be a need for automatically aligning multi-temporal DSMs which may have been acquired from multiple sensors, with different specifications over a period of time, and may have various overlaps. Terrestrial laser scanners usually capture urban facades in an accurate manner; however this is not the case for building roof structures. On the other hand, vertical photography from UAVs can capture the roofs. Therefore, the automatic fusion of UAV and laser-scanning based DSMs is addressed here as it serves various geospatial applications.