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Sample records for atomic clock based

  1. Heisenberg-limited atom clocks based on entangled qubits.

    Science.gov (United States)

    Kessler, E M; Kómár, P; Bishof, M; Jiang, L; Sørensen, A S; Ye, J; Lukin, M D

    2014-05-16

    We present a quantum-enhanced atomic clock protocol based on groups of sequentially larger Greenberger-Horne-Zeilinger (GHZ) states that achieves the best clock stability allowed by quantum theory up to a logarithmic correction. Importantly the protocol is designed to work under realistic conditions where the drift of the phase of the laser interrogating the atoms is the main source of decoherence. The simultaneous interrogation of the laser phase with a cascade of GHZ states realizes an incoherent version of the phase estimation algorithm that enables Heisenberg-limited operation while extending the coherent interrogation time beyond the laser noise limit. We compare and merge the new protocol with existing state of the art interrogation schemes, and identify the precise conditions under which entanglement provides an advantage for clock stabilization: it allows a significant gain in the stability for short averaging time.

  2. Compact atomic clock prototype based on coherent population trapping

    Directory of Open Access Journals (Sweden)

    Danet Jean-Marie

    2014-01-01

    Full Text Available Toward the next generations of compact atomic clocks, clocks based on coherent population trapping (CPT offer a very interesting alternative. Thanks to CPT, a quantum interfering process, this technology has made a decisive step in the miniaturization direction. Fractional frequency stability of 1.5x10-10 at 1 s has been demonstrated in commercial devices of a few cm3. The laboratory prototype presented here intends to explore what could be the ultimate stability of a CPT based device. To do so, an original double-Λ optical scheme and a pulsed interrogation have been implemented in order to get a good compromise between contrast and linewidth. A study of two main sources of noise, the relative intensity and the local oscillator (LO noise, has been performed. By designing simple solutions, it led to a new fractional frequency limitation lower than 4x10-13 at 1 s integration. Such a performance proves that such a technology could rival with classical ones as double resonance clocks.

  3. A Compact Microchip-Based Atomic Clock Based on Ultracold Trapped Rb Atoms

    CERN Document Server

    Farkas, Daniel M; Anderson, Dana Z

    2009-01-01

    We propose a compact atomic clock based on ultracold Rb atoms that are magnetically trapped near the surface of an atom microchip. An interrogation scheme that combines electromagnetically-induced transparency (EIT) with Ramsey's method of separated oscillatory fields can achieve atomic shot-noise level performance of 10^{-13}/sqrt(tau) for 10^6 atoms. The EIT signal can be detected with a heterodyne technique that provides noiseless gain; with this technique the optical phase shift of a 100 pW probe beam can be detected at the photon shot-noise level. Numerical calculations of the density matrix equations are used to identify realistic operating parameters at which AC Stark shifts are eliminated. By considering fluctuations in these parameters, we estimate that AC Stark shifts can be canceled to a level better than 2*10^{-14}. An overview of the apparatus is presented with estimates of duty cycle and power consumption.

  4. Rubidium atomic beam clock based on lamp-pumping and fluorescence-detection scheme

    Science.gov (United States)

    Wang, Y. H.; Huang, J. Q.; Gu, Y.; Liu, S. Q.; Dong, T. Q.; Lu, Z. H.

    2011-02-01

    A compact, portable rubidium atomic beam clock based on lamp-pumping and fluorescence-detection scheme is proposed. The expected short-term frequency stability can be at least two orders of magnitude better than previous experimental results. The usages of lamp pumping, fluorescence detection and microwave slow-wave resonance structures make this design robust and compact.

  5. Could Atomic clocks be affected by neutrinos?

    CERN Document Server

    Hanafi, Hanaa

    2016-01-01

    An atomic clock is a clock device that uses an electronic transition frequency of the electromagnetic spectrum of atoms as a frequency standard in order to derive a time standard since time is the reciprocal of frequency. If the electronic transition frequencies are in an "optical region", we are talking in this case about optical atomic clocks. If they are in an "microwave region" these atomic clocks are made of the metallic element cesium so they are called Cesium atomic clocks. Atomic clocks are the most accurate time and frequency standards known despite the different perturbations that can affect them, a lot of researches were made in this domain to show how the transitions can be different for different type of perturbations..Since atomic clocks are very sensitive devices, based on coherent states (A coherent state tends to loose coherence after interacting). One question can arise (from a lot of questions) which is why cosmic neutrinos are not affecting these clocks? The answer to this question requir...

  6. Towards Demonstration of a MOT-Based Continuous Cold CS-Beam Atomic Clock

    National Research Council Canada - National Science Library

    Wang, H; Camparo, J. C; Iyanu, G

    2007-01-01

    ... (MOT). This technique has the unique advantage of generating a useful cold atomic beam just outside the volume of a MOT and, hence, can greatly reduce the size of the atomic clock physics package...

  7. Acceleration effects on atomic clocks

    CERN Document Server

    Dahia, F

    2014-01-01

    We consider a free massive particle inside a box which is dragged by Rindler observers. Admitting that the particle obeys the Klein-Gordon equation, we find the frequencies of the stationary states of this system. Transitions between the stationary states are employed to set a standard frequency for a toy atomic clock. Comparing the energy spectrum of the accelerated system with the energy spectrum of an identical system in an inertial frame, we determine the influence of the instantaneous acceleration on the rate of atomic clocks. We argue that our result does not violate the clock hypothesis.

  8. Stochastic models for atomic clocks

    Science.gov (United States)

    Barnes, J. A.; Jones, R. H.; Tryon, P. V.; Allan, D. W.

    1983-01-01

    For the atomic clocks used in the National Bureau of Standards Time Scales, an adequate model is the superposition of white FM, random walk FM, and linear frequency drift for times longer than about one minute. The model was tested on several clocks using maximum likelihood techniques for parameter estimation and the residuals were acceptably random. Conventional diagnostics indicate that additional model elements contribute no significant improvement to the model even at the expense of the added model complexity.

  9. Microfabricated cells for chip-scale atomic clock based on coherent population trapping: Fabrication and investigation

    Directory of Open Access Journals (Sweden)

    S.V. Ermak

    2015-03-01

    Full Text Available A universal method for fabrication of miniature cells for frequency standards and quantum magnetometers containing 87Rb atoms in the atmosphere of inert gas neon based on integrated technologies is considered. The results of experimental studies of coherent population trapping signals observed for a series of cells which provided recovery of vapors of an alkali metal from the rubidium dichromate salt with the help of laser radiation are presented. The coherent population trapping signals with a typical linewidth of 2–3 kHz and a signal-to-noise ratio of 1500 in the 1-Hz bandwidth were observed, which allows one to provide a relative frequency stability of atomic clock of 10−11 at 100 s.

  10. Atomic clock ensemble in space

    Science.gov (United States)

    Cacciapuoti, L.; Salomon, C.

    2011-12-01

    Atomic Clock Ensemble in Space (ACES) is a mission using high-performance clocks and links to test fundamental laws of physics in space. Operated in the microgravity environment of the International Space Station, the ACES clocks, PHARAO and SHM, will generate a frequency reference reaching instability and inaccuracy at the 1 · 10-16 level. A link in the microwave domain (MWL) and an optical link (ELT) will make the ACES clock signal available to ground laboratories equipped with atomic clocks. Space-to-ground and ground-to-ground comparisons of atomic frequency standards will be used to test Einstein's theory of general relativity including a precision measurement of the gravitational red-shift, a search for time variations of fundamental constants, and Lorentz Invariance tests. Applications in geodesy, optical time transfer, and ranging will also be supported. ACES has now reached an advanced technology maturity, with engineering models completed and successfully tested and flight hardware under development. This paper presents the ACES mission concept and the status of its main instruments.

  11. Testing general relativity and alternative theories of gravity with space-based atomic clocks and atom interferometers

    Directory of Open Access Journals (Sweden)

    Bondarescu Ruxandra

    2015-01-01

    Full Text Available The successful miniaturisation of extremely accurate atomic clocks and atom interferometers invites prospects for satellite missions to perform precision experiments. We discuss the effects predicted by general relativity and alternative theories of gravity that can be detected by a clock, which orbits the Earth. Our experiment relies on the precise tracking of the spacecraft using its observed tick-rate. The spacecraft’s reconstructed four-dimensional trajectory will reveal the nature of gravitational perturbations in Earth’s gravitational field, potentially differentiating between different theories of gravity. This mission can measure multiple relativistic effects all during the course of a single experiment, and constrain the Parametrized Post-Newtonian Parameters around the Earth. A satellite carrying a clock of fractional timing inaccuracy of Δ f / f ∼ 10−16 in an elliptic orbit around the Earth would constrain the PPN parameters |β − 1|, |γ − 1| ≲ 10−6. We also briefly review potential constraints by atom interferometers on scalar tensor theories and in particular on Chameleon and dilaton models.

  12. Effects of mass defect in atomic clocks

    Science.gov (United States)

    Taichenachev, A. V.; Yudin, V. I.

    2018-01-01

    We consider some implications of the mass defect on the frequency of atomic transitions. We have found that some well-known frequency shifts (such as gravitational and quadratic Doppler shifts) can be interpreted as consequences of the mass defect, i.e., without the need for the concept of time dilation used in special and general relativity theories. Moreover, we show that the inclusion of the mass defect leads to previously unknown shifts for clocks based on trapped ions..

  13. Laser controlled atom source for optical clocks

    Science.gov (United States)

    Kock, Ole; He, Wei; Świerad, Dariusz; Smith, Lyndsie; Hughes, Joshua; Bongs, Kai; Singh, Yeshpal

    2016-11-01

    Precision timekeeping has been a driving force in innovation, from defining agricultural seasons to atomic clocks enabling satellite navigation, broadband communication and high-speed trading. We are on the verge of a revolution in atomic timekeeping, where optical clocks promise an over thousand-fold improvement in stability and accuracy. However, complex setups and sensitivity to thermal radiation pose limitations to progress. Here we report on an atom source for a strontium optical lattice clock which circumvents these limitations. We demonstrate fast (sub 100 ms), cold and controlled emission of strontium atomic vapours from bulk strontium oxide irradiated by a simple low power diode laser. Our results demonstrate that millions of strontium atoms from the vapour can be captured in a magneto-optical trap (MOT). Our method enables over an order of magnitude reduction in scale of the apparatus. Future applications range from satellite clocks testing general relativity to portable clocks for inertial navigation systems and relativistic geodesy.

  14. Low-Drift Coherent Population Trapping Clock Based on Laser-Cooled Atoms and High-Coherence Excitation Fields

    Science.gov (United States)

    Liu, Xiaochi; Ivanov, Eugene; Yudin, Valeriy I.; Kitching, John; Donley, Elizabeth A.

    2017-11-01

    A compact cold-atom coherent population trapping clock in which laser-cooled atoms are interrogated with highly coherent coherent population trapping fields under free fall is presented. The system achieves fractional frequency instability at the level of 3 ×10-13 on the time scale of an hour. The clock may lend itself to portable applications since the atoms typically fall only 1.6 mm during the typical interrogation period of 18 ms.

  15. An atomic clock with 10(-18) instability.

    Science.gov (United States)

    Hinkley, N; Sherman, J A; Phillips, N B; Schioppo, M; Lemke, N D; Beloy, K; Pizzocaro, M; Oates, C W; Ludlow, A D

    2013-09-13

    Atomic clocks have been instrumental in science and technology, leading to innovations such as global positioning, advanced communications, and tests of fundamental constant variation. Timekeeping precision at 1 part in 10(18) enables new timing applications in relativistic geodesy, enhanced Earth- and space-based navigation and telescopy, and new tests of physics beyond the standard model. Here, we describe the development and operation of two optical lattice clocks, both using spin-polarized, ultracold atomic ytterbium. A measurement comparing these systems demonstrates an unprecedented atomic clock instability of 1.6 × 10(-18) after only 7 hours of averaging.

  16. The quantum beat principles and applications of atomic clocks

    CERN Document Server

    Major, F

    2007-01-01

    This work attempts to convey a broad understanding of the physical principles underlying the workings of these quantum-based atomic clocks, with introductory chapters placing them in context with the early development of mechanical clocks and the introduction of electronic time-keeping as embodied in the quartz-controlled clocks. While the book makes no pretense at being a history of atomic clocks, it nevertheless takes a historical perspective in its treatment of the subject. Intended for nonspecialists with some knowledge of physics or engineering, The Quantum Beat covers a wide range of salient topics relevant to atomic clocks, treated in a broad intuitive manner with a minimum of mathematical formalism. Detailed descriptions are given of the design principles of the rubidium, cesium, hydrogen maser, and mercury ion standards; the revolutionary changes that the advent of the laser has made possible, such as laser cooling, optical pumping, the formation of "optical molasses," and the cesium "fountain" stand...

  17. Cesium Atomic Fountain Clocks at NMIJ

    Science.gov (United States)

    2010-11-01

    Wynands and S. Weyers, 2005, “Atomic fountain clocks,” Metrologia , 42, S64-S79. [2] M. Takamoto, F. L. Hong, R. Higashi, et al., 2005, “An optical...beam of laser-cooled cesium atoms,” Physical Review, A 60, R4241-R4244. [13] V. Gerginov, N. Nemitz, S. Weyers, et al., 2010, “Uncertainty evaluation of the caesium fountain clock PTB-CSF2,” Metrologia , 47, 65-79.

  18. Laser Technology in Commercial Atomic Clocks

    Science.gov (United States)

    Lutwak, R.

    2006-05-01

    Commercial atomic frequency standards (AFS) are deployed in diverse civilian, military, and aerospace applications, ranging from high-precision measurement and calibration to navigation, communications and, of course, timekeeping. Currently, commercially available AFS include magnetically-selected cesium beam frequency standards and hydrogen masers and lamp-pumped rubidium oscillators. Despite the revolution in atomic physics and laboratory-scale AFS brought about by the advent of the tunable laser in the early 1970s, commercial AFS invariably rely on more conventional atomic physics technology developed in the 1950s. The reason for this lack of advancement of commercial AFS technology is the relatively poor reliability and environmental sensitivity of narrow-linewidth single-mode laser sources at atomic resonance wavelengths. Over the past 8 years, Symmetricom, in collaboration with laser manufacturers, has developed specialized laser sources for commercial AFS applications. These laser devices, optimized for high spectral purity and long-term reliability, will enable a new generation of commercial AFS. This talk will briefly describe two laser-based atomic frequency standard development programs at Symmetricom. The Chip-Scale Atomic Clock, two orders of magnitude smaller and lower power than any commercial AFS, will enable atomic timing accuracy in portable battery-powered applications. The Optically-Pumped Cesium Beam Frequency Standard, under development for deployment onboard the GPS-III satellite constellation, will provide enhanced short-term stability and longer lifetime compared to magnetically-selected cesium beam AFS.

  19. 0.75 atoms improve the clock signal of 10,000 atoms

    DEFF Research Database (Denmark)

    Kruse, I.; Lange, K.; Peise, Jan

    2017-01-01

    Since the pioneering work of Ramsey, atom interferometers are employed for precision metrology, in particular to measure time and to realize the second. In a classical interferometer, an ensemble of atoms is prepared in one of the two input states, whereas the second one is left empty. In this case.......75 atoms to improve the clock sensitivity of 10,000 atoms by 2.05 dB. The SQL poses a significant limitation for today's microwave fountain clocks, which serve as the main time reference. We evaluate the major technical limitations and challenges for devising a next generation of fountain clocks based...... on atomic squeezed vacuum....

  20. Atomic Clocks Research - An Overview.

    Science.gov (United States)

    1987-08-15

    magnet. Since atomic deflection in an inhomogeneous magnetic field is inversely proportional to the square of the atomic speed, the atomic velocity...purifier and controlled leak; an atomic source (i.e., the dissociator under 39 study); a dipole electromagnetic with pole pieces shaped to produce an...34Relaxation Magnetique d’Atomes de Rubidium sur des Parois Paraffines," J. Phys. (Paris) 24, 379 (1963). 21. S. Wexler, "Deposition of Atomic Beams

  1. The quantum beat the physical principles of atomic clocks

    CERN Document Server

    Major, F G

    1998-01-01

    One of the indicators of the level of technological development of a society has been, throughout history, the precision of clocks it was able to build. This book examines the physical principles underlying the workings of clocks--from the earliest mechanical clocks to the present-day sophisticated clocks based on the properties of individual atoms. Intended for non-specialists with some knowledge of physics or engineering,the book treats the material in a broad intuitive manner, with a minimum of mathematical formalism. The presentation covers a broad range of salient topics relevant to the measurement of frequency and time intervals. The main focus is on electronic time-keeping: clocks based on quartz crystal oscillators and, at greater length, atomic clocks based on quantum resonance in rubidium, cesium, and hydrogen atoms, and, more recently, mercury ions. The book treats the revolutionary changes that the optical laser has wrought on atomic standards through laser cooling and optical pumping, and it disc...

  2. Phase Locking a Clock Oscillator to a Coherent Atomic Ensemble

    Directory of Open Access Journals (Sweden)

    R. Kohlhaas

    2015-04-01

    Full Text Available The sensitivity of an atomic interferometer increases when the phase evolution of its quantum superposition state is measured over a longer interrogation interval. In practice, a limit is set by the measurement process, which returns not the phase but its projection in terms of population difference on two energetic levels. The phase interval over which the relation can be inverted is thus limited to the interval [-π/2,π/2]; going beyond it introduces an ambiguity in the readout, hence a sensitivity loss. Here, we extend the unambiguous interval to probe the phase evolution of an atomic ensemble using coherence-preserving measurements and phase corrections, and demonstrate the phase lock of the clock oscillator to an atomic superposition state. We propose a protocol based on the phase lock to improve atomic clocks limited by local oscillator noise, and foresee the application to other atomic interferometers such as inertial sensors.

  3. Improvement of an Atomic Clock using Squeezed Vacuum

    DEFF Research Database (Denmark)

    Kruse, I.; Lange, K; Peise, Jan

    2016-01-01

    .75 atoms to improve the clock sensitivity of 10000 atoms by 2.05+0.34−0.37  dB. The SQL poses a significant limitation for today’s microwave fountain clocks, which serve as the main time reference. We evaluate the major technical limitations and challenges for devising a next generation of fountain clocks...

  4. Pulsed optically pumped atomic clock with zero-dead-time

    Science.gov (United States)

    Lin, Haixiao; Lin, Jinda; Deng, Jianliao; Zhang, Song; Wang, Yuzhu

    2017-12-01

    By alternatively operating two pulsed optically pumped (POP) atomic clocks, the dead time in a single clock can be eliminated, and the local oscillator can be discriminated continuously. A POP atomic clock with a zero-dead-time (ZDT) method is then insensitive to the microwave phase noise. From τ = 0.01 to 1 s, the Allan deviation of the ZDT-POP clock is reduced as nearly τ-1, which is significantly faster than τ-1/2 of a conventional clock. During 1-40 s, the Allan deviation returns to τ-1/2. Moreover, the frequency stability of the ZDT-POP clock is improved by one order of magnitude compared with that of the conventional POP clock. We also analyze the main factors that limit the short-term frequency stability of the POP atomic clock.

  5. Atomic clocks as a tool to monitor vertical surface motion

    CERN Document Server

    Bondarescu, Ruxandra; Lundgren, Andrew; Hetényi, György; Houlié, Nicolas; Jetzer, Philippe; Bondarescu, Mihai

    2015-01-01

    Atomic clock technology is advancing rapidly, now reaching stabilities of $\\Delta f/f \\sim 10^{-18}$, which corresponds to resolving $1$ cm in equivalent geoid height over an integration timescale of about 7 hours. At this level of performance, ground-based atomic clock networks emerge as a tool for monitoring a variety of geophysical processes by directly measuring changes in the gravitational potential. Vertical changes of the clock's position due to magmatic, volcanic, post-seismic or tidal deformations can result in measurable variations in the clock tick rate. As an example, we discuss the geopotential change arising due to an inflating point source (Mogi model), and apply it to the Etna volcano. Its effect on an observer on the Earth's surface can be divided into two different terms: one purely due to uplift and one due to the redistribution of matter. Thus, with the centimetre-level precision of current clocks it is already possible to monitor volcanoes. The matter redistribution term is estimated to b...

  6. Gravitational wave detection with optical lattice atomic clocks

    CERN Document Server

    Kolkowitz, Shimon; Langellier, Nicholas; Lukin, Mikhail D; Walsworth, Ronald L; Ye, Jun

    2016-01-01

    We propose a space-based gravitational wave detector consisting of two spatially separated, drag-free satellites sharing ultra-stable optical laser light over a single baseline. Each satellite contains an optical lattice atomic clock, which serves as a sensitive, narrowband detector of the local frequency of the shared laser light. A synchronized two-clock comparison between the satellites will be sensitive to the effective Doppler shifts induced by incident gravitational waves (GWs) at a level competitive with other proposed space-based GW detectors, while providing complementary features. The detected signal is a differential frequency shift of the shared laser light due to the relative velocity of the satellites, rather than a phase shift arising from the relative satellite positions, and the detection window can be tuned through the control sequence applied to the atoms' internal states. This scheme enables the detection of GWs from continuous, spectrally narrow sources, such as compact binary inspirals, ...

  7. Parcs:. a Laser-Cooled Atomic Clock in Space

    Science.gov (United States)

    Heavner, T. P.; Hollberg, L. W.; Jefferts, S. R.; Robinson, H. G.; Sullivan, D. B.; Walls, F. L.; Ashby, N.; Klipstein, W. M.; Maleki, L.; Seidel, D. J.; Thompson, R. J.; Wu, S.; Young, L.; Mattison, E. M.; Vessot, R. F. C.; Demarchi, A.

    2002-04-01

    This paper describes progress toward the development of a Primary Atomic Reference Clock in Space (PARCS) and reviews the scientific and technical objectives of the PARCS mission. PARCS is a collaborative effort involving the National Institute of Standards and Technology (NIST), the University of Colorado, the Jet Propulsion Laboratory (JPL), the Harvard Smithsonian Center for Astrophysics (SAO) and the Politecnico di Torino. Space systems for this experiment include a laser-cooled cesium atomic clock and a GPS frequency-comparison and orbit determination system, along with a hydrogen maser that serves as both a local oscillator for the cesium clock and a reference against which certain tests of gravitational theory can be made. In the microgravity environment of the International Space Station (ISS), cesium atoms can be launched more slowly through the clock's microwave cavity, thus significantly reducing a number of troubling effects (including several critical systematic effects), so clock performance can be substantially improved beyond that achieved on earth.

  8. Quantum Atomic Clock Synchronization: An Entangled Concept of Nonlocal Simultaneity

    Science.gov (United States)

    Abrams, D.; Dowling, J.; Williams, C.; Jozsa, R.

    2000-01-01

    We demonstrate that two spatially separated parties (Alice and Bob) can utilize shared prior quantum entanglement, as well as a classical information channel, to establish a synchronized pair of atomic clocks.

  9. Optical lattice clock with strontium atoms; Horloge a reseau optique a atomes de strontium

    Energy Technology Data Exchange (ETDEWEB)

    Baillard, X.; Le Targat, R.; Fouche, M.; Brusch, A.; Westergaard, Ph.G.; Lecallier, A.; Lodewyck, J.; Lemonde, P. [Observatoire de Paris, LNE-SYRTE, Systemes de Reference Temps Espace, 75 (France)

    2009-07-01

    Optical lattice clocks, which were first imagined in 2000, should allow one to achieve unprecedented performances in the domain of atomic clocks. We present here the Strontium lattice clock, developed at LNE-SYRTE. The principle, in particular trapping atoms in the Lamb-Dicke regime and the notion of magic wavelength, is first explained. We then present the results obtained for the {sup 87}Sr isotope, with a frequency accuracy of 2,6.10{sup -15}, and the {sup 88}Sr isotope, with. which we perform the first frequency measurement of an optical lattice clock with bosonic atoms. (authors)

  10. High-temperature operating 894.6nm-VCSELs with extremely low threshold for Cs-based chip scale atomic clocks.

    Science.gov (United States)

    Zhang, Jianwei; Zhang, Xing; Zhu, Hongbo; Zhang, Jian; Ning, Yongqiang; Qin, Li; Wang, Lijun

    2015-06-01

    We report on the design and fabrication of 894.6nm vertical-cavity surface-emitting lasers (VCSELs) with extremely low threshold at high temperatures, for use in chip-scale Cs atomic clocks. A new design method based on the analysis of the threshold gain and the desired carrier density for different active region structures was proposed to gain the low transparent current density. The increase of the threshold current at higher temperatures was successfully suppressed by introducing the large gain-cavity detuning of VCSEL. By detuning the gain-cavity mode to be -11nm, the minimum threshold current of only 0.23mA at 70 °C was achieved. The operating temperature for emitting the wavelength of 894.6nm was 110 °C, with the single mode suppression ratio (SMSR) of more than 25dB and the threshold current of only 0.32mA.

  11. Essen and the National Physical Laboratory's atomic clock

    Science.gov (United States)

    Henderson, Dale

    2005-06-01

    To commemorate the fiftieth anniversary of the development of the first atomic frequency standard, we present some notes about the work of Louis Essen at the National Physical Laboratory. In addition, we publish below some personal recollections of Essen on his work, which have previously been available only on the Internet (http://www.btinternet.com/~time.lord/TheAtomicClock.htm).

  12. PHARAO space atomic clock: new developments on the laser source

    Science.gov (United States)

    Saccoccio, Muriel; Loesel, Jacques; Coatantiec, Claude; Simon, Eric; Laurent, Philippe; Lemonde, Pierre; Maksimovic, I.; Abgrall, M.

    2017-11-01

    The PHARAO project purpose is to open the way for a new atomic clock generation in space, where laser cooling techniques and microgravity allow high frequency stability and accuracy. The French space agency, CNES is funding and managing the clock construction. The French SYRTE and LKB laboratories are scientific and technical advisers for the clock requirements and the follow-up of subsystem development in industrial companies. EADS SODERN is developing two main subsystems of the PHARAO clock: the Laser Source and the Cesium Tube where atoms are cooled, launched, selected and detected by laser beams. The Laser Source includes an optical bench and electronic devices to generate the laser beams required. This paper describes PHARAO and the role laser beams play in its principle of operation. Then we present the Laser Source design, the technologies involved, and the status of development. Lastly, we focus of a key equipment to reach the performances expected, which is the Extended Cavity Laser Diode.

  13. Extracting dark matter signatures from atomic clock stability measurements

    Science.gov (United States)

    Kalaydzhyan, Tigran; Yu, Nan

    2017-10-01

    We analyze possible effects of the dark matter environment on the atomic clock stability measurements. The dark matter is assumed to exist in the form of waves of ultralight scalar fields or in the form of topological defects (monopoles and strings). We identify dark matter signal signatures in clock Allan deviation plots that can be used to constrain the dark matter coupling to the Standard Model fields. The existing data on the Al+/Hg+ clock comparison are used to put new limits on the dilaton dark matter in the region of masses mϕ>10-15 eV . We also estimate the sensitivities of future atomic clock experiments in space, including the cesium microwave and strontium optical clocks aboard the International Space Station, as well as a potential nuclear clock. These experiments are expected to put new limits on the topological dark matter in the range of masses 10-10 eV

  14. Atomic clocks and the continuous-time random-walk

    Science.gov (United States)

    Formichella, Valerio; Camparo, James; Tavella, Patrizia

    2017-11-01

    Atomic clocks play a fundamental role in many fields, most notably they generate Universal Coordinated Time and are at the heart of all global navigation satellite systems. Notwithstanding their excellent timekeeping performance, their output frequency does vary: it can display deterministic frequency drift; diverse continuous noise processes result in nonstationary clock noise (e.g., random-walk frequency noise, modelled as a Wiener process), and the clock frequency may display sudden changes (i.e., "jumps"). Typically, the clock's frequency instability is evaluated by the Allan or Hadamard variances, whose functional forms can identify the different operative noise processes. Here, we show that the Allan and Hadamard variances of a particular continuous-time random-walk, the compound Poisson process, have the same functional form as for a Wiener process with drift. The compound Poisson process, introduced as a model for observed frequency jumps, is an alternative to the Wiener process for modelling random walk frequency noise. This alternate model fits well the behavior of the rubidium clocks flying on GPS Block-IIR satellites. Further, starting from jump statistics, the model can be improved by considering a more general form of continuous-time random-walk, and this could bring new insights into the physics of atomic clocks.

  15. PARCS-Primary Atomic Reference Clock in Space

    Science.gov (United States)

    Ashby, Neil

    2000-04-01

    The purpose of the PARCS project is to place an advanced Cesium clock on the International Space Station (ISS). The project has been approved by NASA at the level of Science Concept Review. Groups at the National Institute of Standards and Technology, Jet Propulsion Laboratory, University of Colorado, and Harvard-Smithsonian Astrophysical Observatory, University of Torino are collaborating on clock design and construction. The microgravity space environment allows laser-cooled Cs atoms to spend longer times in the beam, resulting in improved clock performance. Clock stabilities of 3 × 10-14 at one second and accuracies of 1 × 10-16 are projected. With improved clock performance, significant improvements in several fundamental special and general relativity experiments are expected. For an ISS orbit at 400 km altitude and eccentricity 0.02, the gravitational frequency shift should be measureable about 35 times better than the previous best, Gravity Probe A. Improvements in testing Local Position Invariance and in a Kennedy-Thorndike experiment are expected. Areas of technology such as world-wide timing and time transfer and navigation will also directly benefit from such a high-performance clock in space. This paper will briefly describe the PARCS clock. The principal limitations on performance of relativity experiments, scientific objectives and benefits, and projected outcomes, will be discussed.

  16. Improved Tracking of an Atomic-Clock Resonance Transition

    Science.gov (United States)

    Prestage, John D.; Chung, Sang K.; Tu, Meirong

    2010-01-01

    An improved method of making an electronic oscillator track the frequency of an atomic-clock resonance transition is based on fitting a theoretical nonlinear curve to measurements at three oscillator frequencies within the operational frequency band of the transition (in other words, at three points within the resonance peak). In the measurement process, the frequency of a microwave oscillator is repeatedly set at various offsets from the nominal resonance frequency, the oscillator signal is applied in a square pulse of the oscillator signal having a suitable duration (typically, of the order of a second), and, for each pulse at each frequency offset, fluorescence photons of the transition in question are counted. As described below, the counts are used to determine a new nominal resonance frequency. Thereafter, offsets are determined with respect to the new resonance frequency. The process as described thus far is repeated so as to repeatedly adjust the oscillator to track the most recent estimate of the nominal resonance frequency.

  17. Searching for dark matter with optical atomic clocks

    CERN Document Server

    Wcislo, Piotr; Bober, Marcin; Cygan, Agata; Lisak, Daniel; Ciurylo, Roman; Zawada, Michal

    2016-01-01

    One of the most fundamental questions of modern physics is the existence of yet unknown forms of matter and interactions. The total mass density of the Universe appears to be dominated by some hypothetical dark matter (DM). However, beyond its gravitational interaction at galactic scale, little is known about the DM nature and properties. One possibility is that it has a form of stable topological defects built from light scalar fields which, for nonzero DM-SM coupling, would result in transient variations of fundamental constants. Optical atomic clocks, highly sensitive to variations of the fine-structure constant, seem to be natural candidates for such searches. Here we demonstrate the first experimental constraint on the strength of transient DM-SM coupling determined with optical atomic clocks. Instead of measuring the phase difference between two distant clocks we determine a common component of their readouts. We show that our constraint, even for one-day measurement, greatly exceeds previous laboratory...

  18. Optical lattice clock with Strontium atoms; Horloge a reseau optique a atomes de strontium

    Energy Technology Data Exchange (ETDEWEB)

    Baillard, X

    2008-01-15

    This thesis presents the latest achievements regarding the optical lattice clock with Strontium atoms developed at LNE-SYRTE. After a review of the different types of optical clocks that are currently under development, we stress on the concept of optical lattice clock which was first imagined for Sr{sup 87} using the {sup 1}S{sub 0} {yields} {sup 3}P{sub 0} transition. We exhibit the features of this atom, in particular the concept of magic wavelength for the trap, and the achievable performances for this kind of clock. The second part presents the experimental aspects, insisting particularly on the ultra-stable laser used for the interrogation of the atoms which is a central part of the experiment. Among the latest improvements, an optical pumping phase and an interrogation phase using a magnetic field have been added in order to refine the evaluation of the Zeeman effect. Finally, the last part presents the experimental results. The last evaluation of the clock using Sr{sup 87} atoms allowed us to reach a frequency accuracy of 2.6*10{sup -15} and a measurement in agreement with the one made at JILA (Tokyo university) at the 10{sup -15} level. On another hand, thanks to recent theoretical proposals, we made a measurement using the bosonic isotope Sr{sup 88} by adapting the experimental setup. This measurement represents the first evaluation for this type of clock, with a frequency accuracy of 7*10{sup -14}. (author)

  19. Atomic clock ensemble in space (ACES) data analysis

    Science.gov (United States)

    Meynadier, F.; Delva, P.; le Poncin-Lafitte, C.; Guerlin, C.; Wolf, P.

    2018-02-01

    The Atomic Clocks Ensemble in Space (ACES/PHARAO mission, ESA & CNES) will be installed on board the International Space Station (ISS) next year. A crucial part of this experiment is its two-way microwave link (MWL), which will compare the timescale generated on board with those provided by several ground stations disseminated on the Earth. A dedicated data analysis center is being implemented at SYRTE—Observatoire de Paris, where our team currently develops theoretical modelling, numerical simulations and the data analysis software itself. In this paper, we present some key aspects of the MWL measurement method and the associated algorithms for simulations and data analysis. We show the results of tests using simulated data with fully realistic effects such as fundamental measurement noise, Doppler, atmospheric delays, or cycle ambiguities. We demonstrate satisfactory performance of the software with respect to the specifications of the ACES mission. The main scientific product of our analysis is the clock desynchronisation between ground and space clocks, i.e. the difference of proper times between the space clocks and ground clocks at participating institutes. While in flight, this measurement will allow for tests of general relativity and Lorentz invariance at unprecedented levels, e.g. measurement of the gravitational redshift at the 3×10-6 level. As a specific example, we use real ISS orbit data with estimated errors at the 10 m level to study the effect of such errors on the clock desynchronisation obtained from MWL data. We demonstrate that the resulting effects are totally negligible.

  20. Clock Technology Development in the Laser Cooling and Atomic Physics (LCAP) Program

    Science.gov (United States)

    Seidel, Dave; Thompson, R. J.; Klipstein, W. M.; Kohel, J.; Maleki, L.

    2000-01-01

    This paper presents the Laser Cooling and Atomic Physics (LCAP) program. It focuses on clock technology development. The topics include: 1) Overview of LCAP Flight Projects; 2) Space Clock 101; 3) Physics with Clocks in microgravity; 4) Space Clock Challenges; 5) LCAP Timeline; 6) International Space Station (ISS) Science Platforms; 7) ISS Express Rack; 8) Space Qualification of Components; 9) Laser Configuration; 10) Clock Rate Comparisons: GPS Carrier Phase Frequency Transfer; and 11) ISS Model Views. This paper is presented in viewgraph form.

  1. A high-performance Raman-Ramsey Cs vapor cell atomic clock

    Science.gov (United States)

    Abdel Hafiz, Moustafa; Coget, Grégoire; Yun, Peter; Guérandel, Stéphane; de Clercq, Emeric; Boudot, Rodolphe

    2017-03-01

    We demonstrate a high-performance coherent-population-trapping (CPT) Cs vapor cell atomic clock using the push-pull optical pumping technique in the pulsed regime, allowing the detection of high-contrast and narrow Ramsey-CPT fringes. The impact of several experimental parameters onto the clock resonance and short-term fractional frequency stability, including the laser power, the cell temperature, and the Ramsey sequence parameters, has been investigated. We observe and explain the existence of a slight dependence on laser power of the central Ramsey-CPT fringe line-width in the pulsed regime. We report also that the central fringe line-width is commonly narrower than the expected Ramsey line-width given by 1 / ( 2 T R ) , with TR the free-evolution time, for short values of TR. The clock demonstrates a short-term fractional frequency stability at the level of 2.3 × 10 - 13 τ - 1 / 2 up to 100 s averaging time, mainly limited by the laser amplitude modulation noise. Comparable performances are obtained in the conventional continuous wave regime, with the use of an additional laser power stabilization setup. The pulsed interaction allows to reduce significantly the clock frequency sensitivity to laser power variations, especially for high values of TR. This pulsed CPT clock, ranking among the best microwave vapor cell atomic frequency standards, could find applications in telecommunication, instrumentation, defense or satellite-based navigation systems.

  2. Tunable dual-frequency laser source for coherent population trapping cesium atomic clocks

    Science.gov (United States)

    Camargo, F. A.; Georges, P.; Lucas-Leclin, G.; Baili, G.; Morvan, L.; Dolfi, D.; Holleville, D.; Guerandel, S.; Sagnes, I.

    2017-11-01

    Coherent population trapping (CPT) has been demonstrated as an interesting technique for miniature atomic frequency references [1,2] and quantum information. It is based on the coupling of the two hyperfine ground states of an alkali atom - namely cesium (133Cs) for atomic clocks - through excitation to a common atomic level by two phase-coherent laser fields nearly resonant with the atomic transitions. The frequency difference between the two laser fields is tuned at the atomic frequency splitting in the microwave range, equal to 9.192 GHz for 133Cs atoms. Outputs powers in the mW range and narrow-linewidth emission (<500 kHz) are required for the two laser beams.

  3. Optical Atomic Clock for Fundamental Physics and Precision Metrology in Space

    Science.gov (United States)

    Williams, Jason; Le, Thanh; Kulas, Sascha; Yu, Nan

    2017-04-01

    The maturity of optical atomic clocks (OC), which operate at optical frequencies for higher quality-factor as compared to their microwave counterparts, has rapidly progressed to the point where lab-based systems now outperform the record cesium clocks by orders of magnitude in both accuracy and stability. We will present our efforts to develop a strontium optical clock testbed at JPL, aimed towards extending the exceptional performance demonstrated by OCs from state-of-the-art laboratory designs to a transportable instrument that can fit within the space and power constraints of e.g. a single express rack onboard the International Space Station. The overall technology will find applications for future fundamental physics research, both on ground and in space, precision time keeping, and NASA/JPL time and frequency test capabilities. This research was carried out at the Jet Propulsion Laboratory, California Institute of Technology, under a contract with the National Aeronautics and Space Administration.

  4. A clock synchronization skeleton based on RTAI

    NARCIS (Netherlands)

    Huang, Y.; Visser, P.M.; Broenink, Johannes F.

    2006-01-01

    This paper presents a clock synchronization skeleton based on RTAI (Real Time Application Interface). The skeleton is a thin layer that provides unified but extendible interfaces to the underlying operating system, the synchronization algorithms and the upper level applications in need of clock

  5. Optical lattice clock with strontium atoms: a second generation of cold atom clocks; Horloge a reseau optique au strontium: une 2. generation d'horloges a atomes froids

    Energy Technology Data Exchange (ETDEWEB)

    Le Targat, R

    2007-07-15

    Atomic fountains, based on a microwave transition of Cesium or Rubidium, constitute the state of the art atomic clocks, with a relative accuracy close to 10{sup -16}. It nevertheless appears today that it will be difficult to go significantly beyond this level with this kind of device. The use of an optical transition, the other parameters being unchanged, gives hope for a 4 or 5 orders of magnitude improvement of the stability and of the relative uncertainty on most systematic effects. As for motional effects on the atoms, they can be controlled on a very different manner if they are trapped in an optical lattice instead of experiencing a free ballistic flight stage, characteristic of fountains. The key point of this approach lies in the fact that the trap can be operated in such a way that a well chosen, weakly allowed, J=0 {yields} J=0 clock transition can be free from light shift effects. In this respect, the strontium atom is one of the most promising candidate, the 1S{sub 0} {yields} 3P{sub 0} transition has a natural width of 1 mHz, and several other easily accessible transitions can be used to efficiently laser cool atoms down to 10 {mu}K. This thesis demonstrates the experimental feasibility of an optical lattice clock based on the strontium atom, and reports on a preliminary evaluation of the relative accuracy with the fermionic isotope {sup 87}Sr, at a level of a few 10{sup -15}. (author)

  6. High power VCSEL devices for atomic clock applications

    Science.gov (United States)

    Watkins, L. S.; Ghosh, C.; Seurin, J.-F.; Zhou, D.; Xu, G.; Xu, B.; Miglo, A.

    2015-09-01

    We are developing VCSEL technology producing >100mW in single frequency at wavelengths 780nm, 795nm and 850nm. Small aperture VCSELs with few mW output have found major applications in atomic clock experiments. Using an external cavity three-mirror configuration we have been able to operate larger aperture VCSELs and obtain >70mW power in single frequency operation. The VCSEL has been mounted in a fiber pigtailed package with the external mirror mounted on a shear piezo. The package incorporates a miniature Rb cell locker to lock the VCSEL wavelength. This VCSEL operates in single frequency and is tuned by a combination of piezo actuator, temperature and current. Mode-hop free tuning over >30GHz frequency span is obtained. The VCSEL has been locked to the Rb D2 line and feedback control used to obtain line-widths of <100kHz.

  7. Metrological characterization of custom-designed 894.6 nm VCSELs for miniature atomic clocks.

    Science.gov (United States)

    Gruet, F; Al-Samaneh, A; Kroemer, E; Bimboes, L; Miletic, D; Affolderbach, C; Wahl, D; Boudot, R; Mileti, G; Michalzik, R

    2013-03-11

    We report on the characterization and validation of custom-designed 894.6 nm vertical-cavity surface-emitting lasers (VCSELs), for use in miniature Cs atomic clocks based on coherent population trapping (CPT). The laser relative intensity noise (RIN) is measured to be 1 × 10(-11) Hz(-1) at 10 Hz Fourier frequency, for a laser power of 700 μW. The VCSEL frequency noise is 10(13) · f(-1) Hz(2)/Hz in the 10 Hz VCSEL’s measured fractional frequency instability (Allan deviation) of ≈ 1 × 10(-8) at 1 s, and also is consistent with the VCSEL’s typical optical linewidth of 20-25 MHz. The VCSEL bias current can be directly modulated at 4.596 GHz with a microwave power of -6 to +6 dBm to generate optical sidebands for CPT excitation. With such a VCSEL, a 1.04 kHz linewidth CPT clock resonance signal is detected in a microfabricated Cs cell filled with Ne buffer gas. These results are compatible with state-of-the-art CPT-based miniature atomic clocks exhibiting a short-term frequency instability of 2-3 × 10(-11) at τ = 1 s and few 10(-12) at τ = 10(4) s integration time..

  8. Role of the multipolar black-body radiation shifts in the atomic clocks ...

    Indian Academy of Sciences (India)

    2014-07-27

    BBR) shifts in the single ion atomic clocks to appraise the anticipated 10-18 uncertainty level. With an attempt to use the advanced technologies for reducing the instrumental uncertainties at the unprecedented low, it is essential ...

  9. High-performance Atomic Clock Modeling and Its Application in Precise Point Positioning

    Directory of Open Access Journals (Sweden)

    ZHANG Xiaohong

    2015-04-01

    Full Text Available Presently, many IGS tracking stations have been equipped with high performance atomic clocks. In this paper, the modified Allan variance method is used to analyze the time-domain characterization of random noise of receiver clocks from different IGS tracking stations. Then, we not only evaluate the short-term stability of different types of receiver clock and the feasibility of clock modeling, but also take advantage of the observational data of Active Hydrogen Maser from IGS station in order to constrain random variation of receiver clock offset by implementing short-term clock modeling in precise point positioning(PPP algorithm and improve positioning performance of PPP. The experiment results show that the method of clock modeling reduces the correlation between the height component, the zenith path delay and receiver clock offset parameter, the accuracy of height component can be improved by 50%. The proposed method can improve the PPP performance in crustal deformation monitoring, LEO satellite orbit determination, GNSS methodology and many other high precise GNSS geoscience fields when a high-performance atomic clock is deployed.

  10. A VLBI experiment using a remote atomic clock via a coherent fibre link

    Science.gov (United States)

    Clivati, Cecilia; Ambrosini, Roberto; Artz, Thomas; Bertarini, Alessandra; Bortolotti, Claudio; Frittelli, Matteo; Levi, Filippo; Mura, Alberto; Maccaferri, Giuseppe; Nanni, Mauro; Negusini, Monia; Perini, Federico; Roma, Mauro; Stagni, Matteo; Zucco, Massimo; Calonico, Davide

    2017-02-01

    We describe a VLBI experiment in which, for the first time, the clock reference is delivered from a National Metrology Institute to a radio telescope using a coherent fibre link 550 km long. The experiment consisted of a 24-hours long geodetic campaign, performed by a network of European telescopes; in one of those (Medicina, Italy) the local clock was alternated with a signal generated from an optical comb slaved to a fibre-disseminated optical signal. The quality of the results obtained with this facility and with the local clock is similar: interferometric fringes were detected throughout the whole 24-hours period and it was possible to obtain a solution whose residuals are comparable to those obtained with the local clock. These results encourage further investigation of the ultimate VLBI performances achievable using fibre dissemination at the highest precision of state-of-the-art atomic clocks.

  11. Spin squeezing in optical lattice clocks through lattice based quantum non-demolition measurements

    Science.gov (United States)

    Meiser, Dominic; Holland, Murray J.

    2008-05-01

    Optical lattice clocks based on neutral earth alkaline atoms have made dramatic progress recently and are now competitive with the most stable frequency standards. In the current generation of experiments the short time stability of the clocks is within a factor of two of the spin projection noise limited stability. In this presentation we show that the atoms imprint information on the lattice beams that can be used to perform a quantum non-demolition measurement of the atomic state. Such a quantum non-demolition measurement can reduce the spin-projection noise below the standard quantum limit through measurement back-action induced spin squeezing thus enabling still better short time stability of the lattice clock. In addition to potentially leading to better clocks this work also opens up new areas of research at the interface of cavity QED, condensed matter physics and precision measurements.

  12. Atomic clocks: A brief history and current status of research in India

    Indian Academy of Sciences (India)

    2014-02-19

    Feb 19, 2014 ... The first practical pendulum clock based on the principles first outlined by Galileo ... Pendulum clocks were then succeeded by quartz crystal oscil- lators, which were based on the ... scheme is rather simple and that the 852-nm wavelength of its D2 line falls right into the range where silicon photodiodes are ...

  13. An Optical Lattice Clock with Spin 1/2 Atoms

    Science.gov (United States)

    2012-01-01

    one piece, albeit an important one. There are several reasons to search for such variations, ranging from tests of new cosmological and unification...that the outcome of a non- gravitational measurement does not depend on the value of the local gravitational potential. Space-born optical clocks could...Alternatively, the ratio could be monitored as the satellite traverses a highly eccentric orbit, thus modulating the gravitational potential in time. In this

  14. Susceptibility of Redundant Versus Singular Clock Domains Implemented in SRAM-Based FPGA TMR Designs

    Science.gov (United States)

    Berg, Melanie D.; LaBel, Kenneth A.; Pellish, Jonathan

    2016-01-01

    We present the challenges that arise when using redundant clock domains due to their clock-skew. Radiation data show that a singular clock domain (DTMR) provides an improved TMR methodology for SRAM-based FPGAs over redundant clocks.

  15. Feasibility of hollow core fiber based optical lattice clock

    Science.gov (United States)

    Ilinova, Ekaterina; Babb, James F.; Derevianko, Andrei; Theoretical atomic; molecular physics group Team; Atomic; Molecular Physics Division Team

    2017-04-01

    The possibility of building the optical lattice clock based on the narrow 1S0 -3P0 transition in Hg and other alkaline-earth like atoms optically trapped inside the hollow core fiber has been studied. The general form of the long range atom-surface interaction potential at non-zero temperatures has been calculated for the hollow capillary geometry. The resulting 1S0 -3P0 transition frequency shift has been calculated for Sr and Hg atoms as a function of their position inside the capillary. Its dependence on the geometric parameters and optical properties of the capillary material has been analyzed. The resonant enhancement of the atom-surface interaction potential and radiative decay rate of the 3P0 state at certain parameters of the waveguide has been studied. For the silica capillary with inner radius Rin > 15 μm and thickness d 1 μm the atom surface interaction induced 1S0 -3P0 transition frequency shift on the capillary axis can be suppressed down to the level δν / ν <10-18 . The additional frequency shifts and atom loss from the optical trap due to the residual birefringence of the waveguide and collisions with the buffer gas molecules have been evaluated. University of Nevada, Reno.

  16. Role of the multipolar black-body radiation shifts in the atomic clocks ...

    Indian Academy of Sciences (India)

    BBR) shifts in the single ion atomic clocks to appraise the anticipated 10. −18 uncertainty level. With an attempt to use the advanced technologies for reducing the instrumental uncertainties at the unprece- dented low, it is essential to investigate ...

  17. Atomic clocks: A brief history and current status of research in India

    Indian Academy of Sciences (India)

    National Physical Laboratory India (NPLI) is the nation's timekeeper and is developing an atomic fountain clock which will be a primary frequency standard. ... Time and Frequency Division, CSIR-National Physical Laboratory, Dr K S Krishnan Road, New Delhi 110 012, India. Dates. Early published: 19 February 2014 ...

  18. Clock Technology Development for the Laser Cooling and Atomic Physics (LCAP) Program

    Science.gov (United States)

    Klipstein, W. M.; Thompson, R. J.; Seidel, D. J.; Kohel, J.; Maleki, L.

    1998-01-01

    The Time and Frequency Sciences and Technology Group at Jet Propulsion Laboratory (JPL) has developed a laser cooling capability for flight and has been selected by NASA to support the Laser-Cooling and Atomic Physics (LCAP) program. Current work in the group includes design and development for tee two laser-cooled atomic clock experiments which have been selected for flight on the International Space Station.

  19. Atomic fountain clock with very high frequency stability employing a pulse-tube-cryocooled sapphire oscillator.

    Science.gov (United States)

    Takamizawa, Akifumi; Yanagimachi, Shinya; Tanabe, Takehiko; Hagimoto, Ken; Hirano, Iku; Watabe, Ken-ichi; Ikegami, Takeshi; Hartnett, John G

    2014-09-01

    The frequency stability of an atomic fountain clock was significantly improved by employing an ultra-stable local oscillator and increasing the number of atoms detected after the Ramsey interrogation, resulting in a measured Allan deviation of 8.3 × 10(-14)τ(-1/2)). A cryogenic sapphire oscillator using an ultra-low-vibration pulse-tube cryocooler and cryostat, without the need for refilling with liquid helium, was applied as a local oscillator and a frequency reference. High atom number was achieved by the high power of the cooling laser beams and optical pumping to the Zeeman sublevel m(F) = 0 employed for a frequency measurement, although vapor-loaded optical molasses with the simple (001) configuration was used for the atomic fountain clock. The resulting stability is not limited by the Dick effect as it is when a BVA quartz oscillator is used as the local oscillator. The stability reached the quantum projection noise limit to within 11%. Using a combination of a cryocooled sapphire oscillator and techniques to enhance the atom number, the frequency stability of any atomic fountain clock, already established as primary frequency standard, may be improved without opening its vacuum chamber.

  20. DFB-ridge laser diodes at 894 nm for Cesium atomic clocks

    Science.gov (United States)

    von Bandel, N.; Garcia, M.; Lecomte, M.; Larrue, A.; Robert, Y.; Vinet, E.; Driss, O.; Parrilaud, O.; Krakowski, M.; Gruet, F.; Matthey, R.; Mileti, G.

    2016-02-01

    Time and frequency applications are in need of high accuracy and high stability clocks. Optically pumped compact industrial Cesium atomic clocks are a promising approach that could satisfy these demands. However, the stability of these clocks relies, among others, on the performances of the laser diodes that are used. This issue has led the III-V Lab to commit to the European Euripides-LAMA project that aims to provide competitive compact optical Cesium clocks for ground applications. This work will provide key experience for further space technology qualification. III-V Lab is in charge of the design, fabrication and reliability of Distributed-Feedback diodes (DFB) at 894 nm (D1 line of Cesium) and 852 nm (D2 line). LTF-Unine is in charge of their spectral characterisation. The use of D1 line for pumping will provide simplified clock architecture compared to the D2 line pumping thanks to simpler atomic transitions and a larger spectral separation between lines in the 894 nm case. Also, D1 line pumping overcomes the issue of unpumped "idle states" that occur with D2 line. The modules should provide narrow linewidth (= 10 Hz and 109 Hz2/Hz @ f >= 10 Hz.

  1. Possibility of triple magic trapping of clock and Rydberg states of divalent atoms in optical lattices

    CERN Document Server

    Topcu, T

    2016-01-01

    We predict the possibility of "triply-magic" optical lattice trapping of neutral divalent atoms. In such a lattice, the ${^1}\\!S_{0}$ and ${^3}\\!P_{0}$ clock states and an additional Rydberg state experience identical optical potentials, fully mitigating detrimental effects of the motional decoherence. In particular, we show that this triply magic trapping condition can be satisfied for Yb atom at optical wavelengths and for various other divalent systems (Ca, Mg, Hg and Sr) in the UV region. We assess the quality of triple magic trapping conditions by estimating the probability of excitation out of the motional ground state as a result of the excitations between the clock and the Rydberg states. We also calculate trapping laser-induced photoionization rates of divalent Rydberg atoms at magic frequencies. We find that such rates are below the radiative spontaneous-emission rates, due to the presence of Cooper minima in photoionization cross-sections.

  2. Blackbody-radiation shift in the Sr optical atomic clock

    Science.gov (United States)

    Safronova, M. S.; Porsev, S. G.; Safronova, U. I.; Kozlov, M. G.; Clark, Charles W.

    2013-01-01

    We evaluated the static and dynamic polarizabilities of the 5s21S0 and 5s5p3P0o states of Sr using the high-precision relativistic configuration interaction combined with the all-order method. Our calculation explains the discrepancy between the recent experimental 5s21S0-5s5p3P0o dc Stark shift measurement Δα=247.379(7) [Middelmann , Phys. Rev. Lett.PRLTAO0031-900710.1103/PhysRevLett.109.263004 109, 263004 (2012)] and the earlier theoretical result of 261(4) a.u. [Porsev and Derevianko, Phys. Rev. APLRAAN1050-294710.1103/PhysRevA.74.020502 74, 020502(R) (2006)]. Our present value of 247.5 a.u. is in excellent agreement with the experimental result. We also evaluated the dynamic correction to the BBR shift with 1% uncertainty; -0.1492(16) Hz. The dynamic correction to the BBR shift is unusually large in the case of Sr (7%) and it enters significantly into the uncertainty budget of the Sr optical lattice clock. We suggest future experiments that could further reduce the present uncertainties.

  3. Blackbody radiation shift in the Sr optical atomic clock

    Science.gov (United States)

    Porsev, Sergey; Safronova, Marianna; Safronova, Ul'yana; Kozlov, Mikhail; Clark, Charles

    2013-05-01

    We evaluated the static and dynamic polarizabilities of the 5s21S0 and 5 s 5 p 3P0o states of Sr using the high-precision relativistic configuration interaction + all-order method. Our calculation explains the discrepancy between the recent experimental 5s21S0 - 5 s 5 p3P0o dc Stark shift measurement Δα = 247 . 379 (7) [Middelmann et al., Phys. Rev. Lett. 109, 263004 (2012)] and the earlier theoretical result of 261(4) a.u. [Porsev and Derevianko, Phys. Rev. A 74, 020502R (2006)]. Our present value of 247.5 a.u. is in excellent agreement with the experimental result. We also evaluated the dynamic correction to the BBR shift with 1% uncertainty; -0.1492(16) Hz. The dynamic correction to the BBR shift is unusually large in the case of Sr (7%) and it enters significantly into the uncertainty budget of the Sr optical lattice clock. We suggest future experiments that could further reduce the present uncertainties. NIST, ONR, NSF, RFBR

  4. Al-free active region laser diodes at 894 nm for compact Cesium atomic clocks

    Science.gov (United States)

    Von Bandel, N.; Bébé Manga Lobé, J.; Garcia, M.; Larrue, A.; Robert, Y.; Vinet, E.; Lecomte, M.; Drisse, O.; Parillaud, O.; Krakowski, M.

    2015-03-01

    Time-frequency applications are in need of high accuracy and high stability clocks. Compact industrial Cesium atomic clocks optically pumped is a promising area that could satisfy these demands. However, the stability of these clocks relies, among others, on the performances of laser diodes that are used for atomic pumping. This issue has led the III-V Lab to commit to the European Euripides-LAMA project that aims to provide competitive compact optical Cesium clocks for earth applications. This work will provide key experience for further space technology qualification. We are in charge of the design, fabrication and reliability of Distributed-Feedback diodes (DFB) at 894nm (D1 line of Cesium) and 852nm (D2 line). The use of D1 line for pumping will provide simplified clock architecture compared to D2 line pumping thanks to simpler atomic transitions and larger spectral separation between lines in the 894nm case. Also, D1 line pumping overcomes the issue of unpumped "dark states" that occur with D2 line. The modules should provide narrow linewidth (<1MHz), very good reliability in time and, crucially, be insensitive to optical feedback. The development of the 894nm wavelength is grounded on our previous results for 852nm DFB. Thus, we show our first results from Al-free active region with InGaAsP quantum well broad-area lasers (100μm width, with lengths ranging from 2mm to 4mm), for further DFB operation at 894nm. We obtained low internal losses below 2cm-1, the external differential efficiency is 0.49W/A with uncoated facets and a low threshold current density of 190A/cm², for 2mm lasers at 20°C.

  5. Microfabricated vapor cells filled with a cesium dispensing paste for miniature atomic clocks

    Science.gov (United States)

    Maurice, V.; Rutkowski, J.; Kroemer, E.; Bargiel, S.; Passilly, N.; Boudot, R.; Gorecki, C.; Mauri, L.; Moraja, M.

    2017-04-01

    A method for filling alkali vapor cells with cesium from a dispensing paste is proposed and its compliance with miniature atomic clock applications is evaluated. The paste is an organic-inorganic composition of cesium molybdate, zirconium-aluminum powder, and a hybrid organic-inorganic binder. It is compatible with collective deposition processes such as micro-drop dispensing, which can be done under ambient atmosphere at the wafer-level. After deposition and sealing by anodic bonding, cesium is released from the consolidated paste through local heating with a high power laser. Linear absorption signals have been observed over one year in several cells, showing a stable atomic density. For further validation of this technology for clock applications, one cell has been implemented in a coherent population trapping clock setup to monitor its frequency stability. A fractional frequency aging rate around -4.4 × 10-12 per day has been observed, which is compliant with a clock frequency instability below 1 × 10-11 at one day integration time. This filling method can drastically reduce the cost and the complexity of alkali vapor cell fabrication.

  6. Limits on gravitational Einstein Equivalence Principle violation from monitoring atomic clock frequencies during a year

    CERN Document Server

    Dzuba, V A

    2016-01-01

    Sun's gravitation potential at earth varies during a year due to varying Earth-Sun distance. Comparing the results of very accurate measurements of atomic clock transitions performed at different time in the year allows us to study the dependence of the atomic frequencies on the gravitational potential. We examine the measurement data for the ratio of the frequencies in Hg$^+$ and Al$^+$ clock transitions and absolute frequency measurements (with respect to caesium frequency standard) for Dy, Sr, H, hyperfine transitions in Rb and H, and obtain significantly improved limits on the values of the gravity related parameter of the Einstein Equivalence Principle violating term in the Standard Model Extension Hamiltonian $c_{00} = (3.0 \\pm 5.7) \\times 10^{-7}$ and the parameter for the gravity-related variation of the fine structure constant $\\kappa_{\\alpha} = (-5.3 \\pm 10) \\times 10^{-8}$.

  7. 5D optics for atomic clocks and gravito-inertial sensors

    Science.gov (United States)

    Bordé, Ch. J.

    2008-10-01

    A new framework is proposed to compare and unify photon and atomoptics, which rests on the quantization of proper time. A common waveequation written in five dimensions reduces both cases to 5D-optics ofmassless particles. The ordinary methods of optics (eikonal equation, Kirchhoff integral, Lagrange invariant, Fermat principle, symplectic algebraand ABCD matrices,...) are used to solve this equation in practical cases.The various phase shift cancellations, which occur in atom interferometers, and the quantum Langevin twin paradox for atoms, are then easily explained.A general phase-shift formula for interferometers is derived in fivedimensions, which applies to clocks as well as to gravito-inertial sensors.The application of this formula is illustrated in the case of atomicfountain clocks.

  8. The potential of continuous, local atomic clock measurements for earthquake prediction and volcanology

    Directory of Open Access Journals (Sweden)

    Bondarescu Mihai

    2015-01-01

    Full Text Available Modern optical atomic clocks along with the optical fiber technology currently being developed can measure the geoid, which is the equipotential surface that extends the mean sea level on continents, to a precision that competes with existing technology. In this proceeding, we point out that atomic clocks have the potential to not only map the sea level surface on continents, but also look at variations of the geoid as a function of time with unprecedented timing resolution. The local time series of the geoid has a plethora of applications. These include potential improvement in the predictions of earthquakes and volcanoes, and closer monitoring of ground uplift in areas where hydraulic fracturing is performed.

  9. Search for domain wall dark matter with atomic clocks on board global positioning system satellites.

    Science.gov (United States)

    Roberts, Benjamin M; Blewitt, Geoffrey; Dailey, Conner; Murphy, Mac; Pospelov, Maxim; Rollings, Alex; Sherman, Jeff; Williams, Wyatt; Derevianko, Andrei

    2017-10-30

    Cosmological observations indicate that dark matter makes up 85% of all matter in the universe yet its microscopic composition remains a mystery. Dark matter could arise from ultralight quantum fields that form macroscopic objects. Here we use the global positioning system as a ~ 50,000 km aperture dark matter detector to search for such objects in the form of domain walls. Global positioning system navigation relies on precision timing signals furnished by atomic clocks. As the Earth moves through the galactic dark matter halo, interactions with domain walls could cause a sequence of atomic clock perturbations that propagate through the satellite constellation at galactic velocities ~ 300 km s -1 . Mining 16 years of archival data, we find no evidence for domain walls at our current sensitivity level. This improves the limits on certain quadratic scalar couplings of domain wall dark matter to standard model particles by several orders of magnitude.

  10. An Atomic Clock with 10 (exp -18) Instability

    Science.gov (United States)

    2013-09-13

    in 1018 enables new timing applications in relativistic geodesy , enhanced Emi h- and space-based navigation and telescopy, and new tests of physics ...in relativistic geodesy , enhanced Earth- and space-based navigation and telescopy, and new tests of physics beyond the standard model. Here, we...experimental tools to address exciting topics in cosmology and gravitational physics such as Hawking radiation (13) or Unruh effect (27). References

  11. Improvement of the frequency stability below the Dick limit with a continuous atomic fountain clock.

    Science.gov (United States)

    Devenoges, Laurent; Stefanov, André; Joyet, Alain; Thomann, Pierre; Di Domenico, Gianni

    2012-02-01

    The frequency instability of a shot-noise limited atomic fountain clock is inversely proportional to its signal-tonoise ratio. Therefore, increasing the atomic flux is a direct way to improve the stability. Nevertheless, in pulsed operation, the local oscillator noise limits the performance via the Dick effect. We experimentally demonstrate here that a continuous atomic fountain allows one to overcome this limitation. In this work, we take advantage of two-laser optical pumping on a cold cesium beam to increase the useful fountain flux and, thus, to reduce the frequency instability below the Dick limit. A stability of 6 × 10(-14)τ(-1/2) has been measured with the continuous cesium fountain FOCS-2.

  12. Optical clocks and relativity.

    Science.gov (United States)

    Chou, C W; Hume, D B; Rosenband, T; Wineland, D J

    2010-09-24

    Observers in relative motion or at different gravitational potentials measure disparate clock rates. These predictions of relativity have previously been observed with atomic clocks at high velocities and with large changes in elevation. We observed time dilation from relative speeds of less than 10 meters per second by comparing two optical atomic clocks connected by a 75-meter length of optical fiber. We can now also detect time dilation due to a change in height near Earth's surface of less than 1 meter. This technique may be extended to the field of geodesy, with applications in geophysics and hydrology as well as in space-based tests of fundamental physics.

  13. Influence of relativistic effects on satellite-based clock synchronization

    Science.gov (United States)

    Wang, Jieci; Tian, Zehua; Jing, Jiliang; Fan, Heng

    2016-03-01

    Clock synchronization between the ground and satellites is a fundamental issue in future quantum telecommunication, navigation, and global positioning systems. Here, we propose a scheme of near-Earth orbit satellite-based quantum clock synchronization with atmospheric dispersion cancellation by taking into account the spacetime background of the Earth. Two frequency entangled pulses are employed to synchronize two clocks, one at a ground station and the other at a satellite. The time discrepancy of the two clocks is introduced into the pulses by moving mirrors and is extracted by measuring the coincidence rate of the pulses in the interferometer. We find that the pulses are distorted due to effects of gravity when they propagate between the Earth and the satellite, resulting in remarkably affected coincidence rates. We also find that the precision of the clock synchronization is sensitive to the source parameters and the altitude of the satellite. The scheme provides a solution for satellite-based quantum clock synchronization with high precision, which can be realized, in principle, with current technology.

  14. Testing for a cosmological influence on local physics using atomic and gravitational clocks

    Science.gov (United States)

    Adams, P. J.; Hellings, R. W.; Canuto, V. M.; Goldman, I.

    1983-01-01

    The existence of a possible influence of the large-scale structure of the universe on local physics is discussed. A particular realization of such an influence is discussed in terms of the behavior in time of atomic and gravitational clocks. Two natural categories of metric theories embodying a cosmic infuence exist. The first category has geodesic equations of motion in atomic units, while the second category has geodesic equations of motion in gravitational units. Equations of motion for test bodies are derived for both categories of theories in the appropriate parametrized post-Newtonian limit and are applied to the Solar System. Ranging data to the Viking lander on Mars are of sufficient precision to reveal (1) if such a cosmological influence exists at the level of Hubble's constant, and (2) which category of theories is appropriate for a descripton of the phenomenon.

  15. Generalized Collective States and Their Role in a Collective State Atomic Interferometer and Atomic Clock

    CERN Document Server

    Sarkar, Resham; Fang, Renpeng; Tu, Yanfei; Shahriar, Selim M

    2014-01-01

    We investigate the behavior of an ensemble of N non-interacting, identical atoms, excited by a laser with a wavelength of $\\lambda$. In general, the i-th atom sees a Rabi frequency $\\Omega_i$, an initial position dependent laser phase $\\phi_i$, and a motion induced Doppler shift of $\\delta_i$. When $\\Omega_i=\\Omega$ and $\\delta_i=\\delta$ for all atoms, the system evolves into a superposition of (N+1) symmetric collective states (SCS), independent of the values of $\\phi_i$. If $\\phi_i=\\phi$ for all atoms, these states simplify to the well-known Dicke collective states. When $\\Omega_i$ or $\\delta_i$ is distinct for each atom, the system evolves into a superposition of SCS as well as asymmetric collective states (ACS). For large N, the number of ACS's $(2^N-N-1)$ is far greater than that of the SCS. We show how to formulate the properties of all the collective states under various non-idealities, and use this formulation to understand the dynamics thereof. For the case where $\\Omega_i=\\Omega$ and $\\delta_i=\\delt...

  16. Frequency ratios of Sr, Yb and Hg based optical lattice clocks and their applications

    CERN Document Server

    Takamoto, Masao; Das, Manoj; Nemitz, Nils; Ohkubo, Takuya; Yamanaka, Kazuhiro; Ohmae, Noriaki; Takano, Tetsushi; Akatsuka, Tomoya; Yamaguchi, Atsushi; Katori, Hidetoshi

    2015-01-01

    This article describes the recent progress of optical lattice clocks with neutral strontium ($^{87}$Sr), ytterbium ($^{171}$Yb) and mercury ($^{199}$Hg) atoms. In particular, we present frequency comparison between the clocks locally via an optical frequency comb and between two Sr clocks at remote sites using a phase-stabilized fibre link. We first review cryogenic Sr optical lattice clocks that reduce the room-temperature blackbody radiation shift by two orders of magnitude and serve as a reference in the following clock comparisons. Similar physical properties of Sr and Yb atoms, such as transition wavelengths and vapour pressure, have allowed our development of a compatible clock for both species. A cryogenic Yb clock is evaluated by referencing a Sr clock. We also report on a Hg clock, which shows one order of magnitude less sensitivity to blackbody radiation, while its large nuclear charge makes the clock sensitive to the variation of fine-structure constant. Connecting all three types of clocks by an o...

  17. Measurement of the magnetic field profile in the atomic fountain clock FoCS-2 using Zeeman spectroscopy

    Science.gov (United States)

    Devenoges, Laurent; Di Domenico, Gianni; Stefanov, André; Jallageas, Antoine; Morel, Jacques; Südmeyer, Thomas; Thomann, Pierre

    2017-04-01

    We report the evaluation of the second-order Zeeman shift in the continuous atomic fountain clock FoCS-2. Because of its continuous operation and geometrical constraints, the methods used in pulsed fountains are not applicable. We use here time-resolved Zeeman spectroscopy to probe the magnetic field profile in the clock. Pulses of ac magnetic excitation allow us to spatially resolve the Zeeman frequency and to evaluate the Zeeman shift with a relative uncertainty smaller than 5× {{10}-16} .

  18. Timing Jitter Analysis for Clock recovery Circuits Based on an Optoelectronic Phase-Locked Loop (OPLL)

    DEFF Research Database (Denmark)

    Zibar, Darko; Mørk, Jesper; Oxenløwe, Leif Katsuo

    2005-01-01

    Timing jitter of an OPLL based clock recovery is investigated. We demonstrate how loop gain, input and VCO signal jitter, loop filter bandwidth and a loop time delay influence jitter of the extracted clock signal...

  19. Generating clock signals for a cycle accurate, cycle reproducible FPGA based hardware accelerator

    Science.gov (United States)

    Asaad, Sameth W.; Kapur, Mohit

    2016-01-05

    A method, system and computer program product are disclosed for generating clock signals for a cycle accurate FPGA based hardware accelerator used to simulate operations of a device-under-test (DUT). In one embodiment, the DUT includes multiple device clocks generating multiple device clock signals at multiple frequencies and at a defined frequency ratio; and the FPG hardware accelerator includes multiple accelerator clocks generating multiple accelerator clock signals to operate the FPGA hardware accelerator to simulate the operations of the DUT. In one embodiment, operations of the DUT are mapped to the FPGA hardware accelerator, and the accelerator clock signals are generated at multiple frequencies and at the defined frequency ratio of the frequencies of the multiple device clocks, to maintain cycle accuracy between the DUT and the FPGA hardware accelerator. In an embodiment, the FPGA hardware accelerator may be used to control the frequencies of the multiple device clocks.

  20. Wave Atom Based Watermarking

    OpenAIRE

    Bukhari, Ijaz; Nuhman-ul-Haq; Hyat, Khizar

    2013-01-01

    Watermarking helps in ensuring originality, ownership and copyrights of a digital image. This paper aims at embedding a Watermark in an image using Wave Atom Transform. Preference of Wave Atoms on other transformations has been due to its sparser expansion, adaptability to the direction of local pattern, and sharp frequency localization. In this scheme, we had tried to spread the watermark in an image so that the information at one place is very small and undetectable. In order to extract the...

  1. Design of Electronic Clock based on STM32

    Science.gov (United States)

    Huang, Jian

    2017-09-01

    This paper describes the design method of electronic clock based on STM32. The hardware circuit is designed, which uses the built-in RTC module of the STM32, and the backup battery is used to supply power. When first programming, the current date and time is wrote, after that the RTC module will automatically count. It also can be used to set the alarm time. Software programming can read the current time and conversion it, then it will be displayed on the LCD screen. The test results show that the design has the advantages of accurate timing, high reliability and long service life.

  2. Ra+ ion trapping : toward an atomic parity violation measurement and an optical clock

    NARCIS (Netherlands)

    Portela, M. Nunez; Dijck, E. A.; Mohanty, A.; Bekker, H.; van den Berg, Joost E.; Giri, G. S.; Hoekstra, S.; Onderwater, C. J. G.; Schlesser, S.; Timmermans, R.G.E.; Versolato, O. O.; Willmann, L.; Wilschut, H. W.; Jungmann, K.

    2014-01-01

    A single Ra+ ion stored in a Paul radio frequency ion trap has excellent potential for a precision measurement of the electroweak mixing angle at low momentum transfer and as the most stable optical clock. The effective transport and cooling of singly charged ions of the isotopes Ra-209 to Ra-214 in

  3. Drifts and Environmental Disturbances in Atomic Clock Subsystems: Quantifying Local Oscillator, Control Loop, and Ion Resonance Interactions.

    Science.gov (United States)

    Enzer, Daphna G; Diener, William A; Murphy, David W; Rao, Shanti R; Tjoelker, Robert L

    2017-03-01

    Linear ion trap frequency standards are among the most stable continuously operating frequency references and clocks. Depending on the application, they have been operated with a variety of local oscillators (LOs), including quartz ultrastable oscillators, hydrogen-masers, and cryogenic sapphire oscillators. The short-, intermediate-, and long-term stability of the frequency output is a complicated function of the fundamental performances, the time dependence of environmental disturbances, the atomic interrogation algorithm, the implemented control loop, and the environmental sensitivity of the LO and the atomic system components. For applications that require moving these references out of controlled lab spaces and into less stable environments, such as fieldwork or spaceflight, a deeper understanding is needed of how disturbances at different timescales impact the various subsystems of the clock and ultimately the output stability. In this paper, we analyze which perturbations have an impact and to what degree. We also report on a computational model of a control loop, which keeps the microwave source locked to the ion resonance. This model is shown to agree with laboratory measurements of how well the feedback removes various disturbances and also with a useful analytic approach we developed for predicting these impacts.

  4. Precision Clock Evaluation Facility

    Data.gov (United States)

    Federal Laboratory Consortium — FUNCTION: Tests and evaluates high-precision atomic clocks for spacecraft, ground, and mobile applications. Supports performance evaluation, environmental testing,...

  5. Mercury Atomic Frequency Standards for Space Based Navigation and Timekeeping

    Science.gov (United States)

    Tjoelker, R. L.; Burt, E. A.; Chung, S.; Hamell, R. L.; Prestage, J. D.; Tucker, B.; Cash, P.; Lutwak, R.

    2012-01-01

    A low power Mercury Atomic Frequency Standard (MAFS) has been developed and demonstrated on the path towards future space clock applications. A self contained mercury ion breadboard clock: emulating flight clock interfaces, steering a USO local oscillator, and consuming approx 40 Watts has been operating at JPL for more than a year. This complete, modular ion clock instrument demonstrates that key GNSS size, weight, and power (SWaP) requirements can be achieved while still maintaining short and long term performance demonstrated in previous ground ion clocks. The MAFS breadboard serves as a flexible platform for optimizing further space clock development and guides engineering model design trades towards fabrication of an ion clock for space flight.

  6. A New Rb Lamp Exciter Circuit for Rb atomic clocks and Studies on Transition from Ring to Red mode

    CERN Document Server

    Singh, Savita; Saxena, G M

    2010-01-01

    In this paper we describe the development of novel RF exciter circuit for electrode less Rb lamp. The lamp exciter circuit is a RF oscillator with a a new configuration operating at 60 to 65 MHz frequency with 3 to 4 watt power. The Rb lamp is used in exciting the ground state hyperfine transitions in Rb atom in a glass cell placed inside a tuned microwave cavity, As the frequency of these hyperfine transitions is very stable it is used in the development of Rb atomic clock by phase locking the oven controlled crystal oscillator (OCXO) to this atomic transition frequency. The details of the Rb lamp exciter are presented in the paper.The Lamp is ideally operated in ring mode as in this mode the linewidth is narrow and there is no self reversal. However, high temperature and RF excitation power may drive the Rb lamp to red mode which gives rise to line broadening and self reversal. It is the experience that mode change from ring to red deteriorates the atomic signal strength and S/N. In this paper the reasons o...

  7. Ultrafast all-optical clock recovery based on phase-only linear optical filtering

    DEFF Research Database (Denmark)

    Maram, Reza; Kong, Deming; Galili, Michael

    2014-01-01

    We report on a novel, efficient technique for all-optical clock recovery from RZ-OOK data signals based on spectral phase-only (all-pass) optical filtering. This technique significantly enhances both the recovered optical clock quality and energy efficiency in comparison with conventional amplitu...... optical filtering approaches using a Fabry-Perot filter. The proposed concept is validated through recovery of the optical clock from a 640 Gbit/s RZ-OOK data signal using a commercial linear optical waveshaper. (C) 2014 Optical Society of America......We report on a novel, efficient technique for all-optical clock recovery from RZ-OOK data signals based on spectral phase-only (all-pass) optical filtering. This technique significantly enhances both the recovered optical clock quality and energy efficiency in comparison with conventional amplitude...

  8. A proportional integral estimator-based clock synchronization protocol for wireless sensor networks.

    Science.gov (United States)

    Yang, Wenlun; Fu, Minyue

    2017-11-01

    Clock synchronization is an issue of vital importance in applications of WSNs. This paper proposes a proportional integral estimator-based protocol (EBP) to achieve clock synchronization for wireless sensor networks. As each local clock skew gradually drifts, synchronization accuracy will decline over time. Compared with existing consensus-based approaches, the proposed synchronization protocol improves synchronization accuracy under time-varying clock skews. Moreover, by restricting synchronization error of clock skew into a relative small quantity, it could reduce periodic re-synchronization frequencies. At last, a pseudo-synchronous implementation for skew compensation is introduced as synchronous protocol is unrealistic in practice. Numerical simulations are shown to illustrate the performance of the proposed protocol. Copyright © 2017 ISA. Published by Elsevier Ltd. All rights reserved.

  9. Feasibility of an optical fiber clock

    Science.gov (United States)

    Ilinova, Ekaterina; Babb, James F.; Derevianko, Andrei

    2017-09-01

    We explore the feasibility of a fiber clock, i.e., a compact, high-precision, optical lattice atomic clock based on atoms trapped inside a hollow-core optical fiber. Such a setup offers an intriguing potential both for a substantially increased number of interrogated atoms (and thereby an improved clock stability) and for miniaturization. We evaluate the sensitivity of the 1S0-3P0 clock transition in Hg and other divalent atoms to the fiber inner core surface at nonzero temperatures. The Casimir-Polder interaction induced 1S0-3P0 transition frequency shift is calculated for the atom inside the hollow capillary as a function of atomic position, capillary material, and geometric parameters. For Hg atoms on the axis of a silica capillary with inner radius ≥15 μ m and optimally chosen thickness d ˜1 μ m , the atom-surface interaction induced 1S0-3P0 clock transition frequency shift can be kept on the level δ ν /νHg˜10-19 . We also estimate the atom loss and heating due to collisions with the buffer gas, lattice intensity noise induced heating, spontaneous photon scattering heating, and residual birefringence induced frequency shifts.

  10. A Transportable Gravity Gradiometer Based on Atom Interferometry

    Science.gov (United States)

    Yu, Nan; Thompson, Robert J.; Kellogg, James R.; Aveline, David C.; Maleki, Lute; Kohel, James M.

    2010-01-01

    A transportable atom interferometer-based gravity gradiometer has been developed at JPL to carry out measurements of Earth's gravity field at ever finer spatial resolutions, and to facilitate high-resolution monitoring of temporal variations in the gravity field from ground- and flight-based platforms. Existing satellite-based gravity missions such as CHAMP and GRACE measure the gravity field via precise monitoring of the motion of the satellites; i.e. the satellites themselves function as test masses. JPL's quantum gravity gradiometer employs a quantum phase measurement technique, similar to that employed in atomic clocks, made possible by recent advances in laser cooling and manipulation of atoms. This measurement technique is based on atomwave interferometry, and individual laser-cooled atoms are used as drag-free test masses. The quantum gravity gradiometer employs two identical atom interferometers as precision accelerometers to measure the difference in gravitational acceleration between two points (Figure 1). By using the same lasers for the manipulation of atoms in both interferometers, the accelerometers have a common reference frame and non-inertial accelerations are effectively rejected as common mode noise in the differential measurement of the gravity gradient. As a result, the dual atom interferometer-based gravity gradiometer allows gravity measurements on a moving platform, while achieving the same long-term stability of the best atomic clocks. In the laboratory-based prototype (Figure 2), the cesium atoms used in each atom interferometer are initially collected and cooled in two separate magneto-optic traps (MOTs). Each MOT, consisting of three orthogonal pairs of counter-propagating laser beams centered on a quadrupole magnetic field, collects up to 10(exp 9) atoms. These atoms are then launched vertically as in an atom fountain by switching off the magnetic field and introducing a slight frequency shift between pairs of lasers to create a moving

  11. Experiments of time elapse comparison of two hydrogen clocks based on two-way satellite time and frequency transfer

    Science.gov (United States)

    Shen, Ziyu; Cai, Chenghui; Shen, Wen-Bin

    2017-04-01

    Since optical atomic clocks in laboratory have achieved a stability and accuracy of 10E-18 level, scientists expect near-future potential applications of precise clocks in geoscience, including for instance the geopotential measurement and world height system unification. Here we provide time ticks comparison between a fixed hydrogen clock and a portable hydrogen clock using the two-way satellite time and frequency transfer (TWSTFT) technique. After comparing the time ticks of two hydrogen clocks at the positions at the same height level for a period, they were separated for a height difference and compared again for a period. Experimental results are expected to confirm the general relativity theory and may provide technical details for future actual applications of precise clocks in geodesy. This study is supported by National 973 Project China (grant No. 2013CB733301 and 2013CB733305) and NSFCs (grant Nos. 41174011, 41429401, 41210006, 41128003, 41021061).

  12. Influence of the ac-Stark shift on GPS atomic clock timekeeping

    Science.gov (United States)

    Formichella, V.; Camparo, J.; Tavella, P.

    2017-01-01

    The ac-Stark shift (or light shift) is a fundamental aspect of the field/atom interaction arising from virtual transitions between atomic states, and as Alfred Kastler noted, it is the real-photon counterpart of the Lamb shift. In the rubidium atomic frequency standards (RAFS) flying on Global Positioning System (GPS) satellites, it plays an important role as one of the major perturbations defining the RAFS' frequency: the rf-discharge lamp in the RAFS creates an atomic signal via optical pumping and simultaneously perturbs the atoms' ground-state hyperfine splitting via the light shift. Though the significance of the light shift has been known for decades, to date there has been no concrete evidence that it limits the performance of the high-quality RAFS flying on GPS satellites. Here, we show that the long-term frequency stability of GPS RAFS is primarily determined by the light shift as a consequence of stochastic jumps in lamplight intensity. Our results suggest three paths forward for improved GPS system timekeeping: (1) reduce the light-shift coefficient of the RAFS by careful control of the lamp's spectrum; (2) operate the lamp under conditions where lamplight jumps are not so pronounced; and (3) employ a light source for optical pumping that does not suffer pronounced light jumps (e.g., a diode laser).

  13. Characterization of commercially available vertical-cavity surface-emitting lasers tuned on Cs D1 line at 894.6  nm for miniature atomic clocks.

    Science.gov (United States)

    Kroemer, Eric; Rutkowski, Jaroslaw; Maurice, Vincent; Vicarini, Rémy; Hafiz, Moustafa Abdel; Gorecki, Christophe; Boudot, Rodolphe

    2016-11-01

    We report on the metrological characterization of novel commercially available 894.6 nm vertical-cavity surface-emitting lasers (VCSELs), dedicated to Cs D1 line spectroscopy experiments. The thermal behavior of the VCSELs is reported, highlighting the existence of a minimum threshold current and maximum output power in the 55°C-60°C range. The laser relative intensity noise, measured to be -108  dB/Hz at 10 Hz Fourier frequency f for a laser power of 25 μW, is reduced with increased power. The VCSELs frequency noise is 108  Hz2/Hz at f=100  Hz. The spectral linewidth of the VCSELs is about 30 MHz. VCSELs injection current can be directly modulated at 4.596 GHz with microwave power in the range of -10 to +0  dBm to generate optical sidebands. A VCSEL was used in a microcell-based Cs atomic clock based on coherent population trapping. A preliminary clock short-term fractional frequency stability of 8×10-11τ-1/2 up to about 100 s is reported, demonstrating the suitability of these VCSELs for miniature atomic clock applications.

  14. Clock-modulation based watermark for protection of embedded processors

    OpenAIRE

    Kufel, Jedrzej; Wilson, Peter; Hill, Stephen; Al-Hashimi, Bashir; Whatmough, Paul N.; Myers, James

    2014-01-01

    This paper presents a novel watermark generation technique for the protection of embedded processors. In previous work, a load circuit is used to generate detectable watermark patterns in the ASIC power supply. This approach leads to hardware area overheads. We propose removing the dedicated load circuit entirely, instead to compensate the reduced power consumption the watermark power pattern is emulated by reusing existing clock gated sequential logic as a zero-overhead load circuit and modu...

  15. Clock Synchronization in Wireless Sensor Networks: Analysis and Design of Error Precision Based on Lossy Networked Control Perspective

    Directory of Open Access Journals (Sweden)

    Wang Ting

    2015-01-01

    Full Text Available Motivated by the importance of the clock synchronization in wireless sensor networks (WSNs, due to the packet loss, the synchronization error variance is a random variable and may exceed the designed boundary of the synchronization variance. Based on the clock synchronization state space model, this paper establishes the model of synchronization error variance analysis and design issues. In the analysis issue, assuming sensor nodes exchange clock information in the network with packet loss, we find a minimum clock information packet arrival rate in order to guarantee the synchronization precision at synchronization node. In the design issue, assuming sensor node freely schedules whether to send the clock information, we look for an optimal clock information exchange rate between synchronization node and reference node which offers the optimal tradeoff between energy consumption and synchronization precision at synchronization node. Finally, simulations further verify the validity of clock synchronization analysis and design from the perspective of synchronization error variance.

  16. Imaging Microwave and DC Magnetic Fields in a Vapor-Cell Rb Atomic Clock

    CERN Document Server

    Affolderbach, Christoph; Bandi, Thejesh; Horsley, Andrew; Treutlein, Philipp; Mileti, Gaetano

    2015-01-01

    We report on the experimental measurement of the DC and microwave magnetic field distributions inside a recently-developed compact magnetron-type microwave cavity, mounted inside the physics package of a high-performance vapor-cell atomic frequency standard. Images of the microwave field distribution with sub-100 $\\mu$m lateral spatial resolution are obtained by pulsed optical-microwave Rabi measurements, using the Rb atoms inside the cell as field probes and detecting with a CCD camera. Asymmetries observed in the microwave field images can be attributed to the precise practical realization of the cavity and the Rb vapor cell. Similar spatially-resolved images of the DC magnetic field distribution are obtained by Ramsey-type measurements. The T2 relaxation time in the Rb vapor cell is found to be position dependent, and correlates with the gradient of the DC magnetic field. The presented method is highly useful for experimental in-situ characterization of DC magnetic fields and resonant microwave structures,...

  17. The ac stark shift and space-borne rubidium atomic clocks

    Science.gov (United States)

    Formichella, V.; Camparo, J.; Sesia, I.; Signorile, G.; Galleani, L.; Huang, M.; Tavella, P.

    2016-11-01

    Due to its small size, low weight, and low power consumption, the Rb atomic frequency standard (RAFS) is routinely the first choice for atomic timekeeping in space. Consequently, though the device has very good frequency stability (rivaling passive hydrogen masers), there is interest in uncovering the fundamental processes limiting its long-term performance, with the goal of improving the device for future space systems and missions. The ac Stark shift (i.e., light shift) is one of the more likely processes limiting the RAFS' long-term timekeeping ability, yet its manifestation in the RAFS remains poorly understood. In part, this comes from the fact that light-shift induced frequency fluctuations must be quantified in terms of the RAFS' light-shift coefficient and the output variations in the RAFS' rf-discharge lamp, which is a nonlinear inductively-couple plasma (ICP). Here, we analyze the light-shift effect for a family of 10 on-orbit Block-IIR GPS RAFS, examining decade-long records of their on-orbit frequency and rf-discharge lamp fluctuations. We find that the ICP's light intensity variations can take several forms: deterministic aging, jumps, ramps, and non-stationary noise, each of which affects the RAFS' frequency via the light shift. Correlating these light intensity changes with RAFS frequency changes, we estimate the light-shift coefficient, κLS, for the family of RAFS: κLS = -(1.9 ± 0.3) × 10-12/%. The 16% family-wide variation in κLS indicates that while each RAFS may have its own individual κLS, the variance of κLS among similarly designed RAFS can be relatively small. Combining κLS with our estimate of the ICP light intensity's non-stationary noise, we find evidence that random-walk frequency noise in high-quality space-borne RAFS is strongly influenced by the RAFS' rf-discharge lamp via the light shift effect.

  18. Internal Clock Drift Estimation in Computer Clusters

    Directory of Open Access Journals (Sweden)

    Hicham Marouani

    2008-01-01

    Full Text Available Most computers have several high-resolution timing sources, from the programmable interrupt timer to the cycle counter. Yet, even at a precision of one cycle in ten millions, clocks may drift significantly in a single second at a clock frequency of several GHz. When tracing the low-level system events in computer clusters, such as packet sending or reception, each computer system records its own events using an internal clock. In order to properly understand the global system behavior and performance, as reported by the events recorded on each computer, it is important to estimate precisely the clock differences and drift between the different computers in the system. This article studies the clock precision and stability of several computer systems, with different architectures. It also studies the typical network delay characteristics, since time synchronization algorithms rely on the exchange of network packets and are dependent on the symmetry of the delays. A very precise clock, based on the atomic time provided by the GPS satellite network, was used as a reference to measure clock drifts and network delays. The results obtained are of immediate use to all applications which depend on computer clocks or network time synchronization accuracy.

  19. Long-Term Stability of NIST Chip-Scale Atomic Clock Physics Packages

    Science.gov (United States)

    2007-01-01

    L. Moi, and G. Orriols, 1976, “ Experimental -Method for Observation of Rf Transitions and Laser Beat Resonances in Oriented Na Vapor,” Nuovo Cimento...della Societa Italiana di Fisica B-General Physics, Relativity, Astronomy, and Mathematical Physics and Methods, 36, 5-20. [16] N. Cyr, M. Têtu...2000, “Theoretical and experimental study of light shift in a CPT-based Rb vapor cell frequency standard,” in Proceedings of the 32nd Annual Precise

  20. Simultaneous Buffer-sizing and Wire-sizing for Clock Trees Based on Lagrangian Relaxation

    Directory of Open Access Journals (Sweden)

    Yu-Min Lee

    2002-01-01

    Full Text Available Delay, power, skew, area and sensitivity are the most important concerns in current clock-tree design. We present in this paper an algorithm for simultaneously optimizing the above objectives by sizing wires and buffers in clock trees. Our algorithm, based on Lagrangian relaxation method, can optimally minimize delay, power and area simultaneously with very low skew and sensitivity. With linear storage overall and linear runtime per iteration, our algorithm is extremely economical, fast and accurate; for example, our algorithm can solve a 6201-wire-segment clock-tree problem using about 1-minute runtime and 1.3-MB memory and still achieve pico-second precision on an IBM RS/6000 workstation.

  1. Phase noise analysis of voltage controlled oscillator used in cesium atomic clock

    Science.gov (United States)

    Zhi, Menghui; Tang, Liang; Qiao, Donghai

    2017-03-01

    Coherent population trapping (CPT) cesium frequency standard plays a significant role in precision guidance of missile and global positioning system (GPS). Low noise 4.596 GHz voltage controlled oscillator (VCO) is an indispensable part of microwave signal source in cesium frequency standard. Low-phase noise is also the most important and difficult performance indicator of VCO. Starting from phase noise analysis method proposed by Leeson, the formulas about the relationship between phase noise of output signal of oscillator feedback model and phase fluctuation spectrum of amplifier, phase noise of oscillator are derived in this paper. Finally, the asymptote model of microwave oscillator is proposed based on the formula derivation. The experiment shows that when the reverse bias voltage of variode is 1.8 V, the designed oscillation frequency of VCO is 4.596 GHz, the power is -1 dBm and the DC power consumption is 19.6 mW. The tendency of phase noise simulation curve and actual test curve conform to asymptote model. The phase noise in 1 and 10 kHz is, respectively, -60.86 and -86.58 dBc/Hz. The significance of the paper lies in determining the main factors influencing oscillator phase noise and providing guiding direction for the design of low-phase noise VCO.

  2. High Performance Clocks and Gravity Field Determination

    Science.gov (United States)

    Müller, J.; Dirkx, D.; Kopeikin, S. M.; Lion, G.; Panet, I.; Petit, G.; Visser, P. N. A. M.

    2018-02-01

    Time measured by an ideal clock crucially depends on the gravitational potential and velocity of the clock according to general relativity. Technological advances in manufacturing high-precision atomic clocks have rapidly improved their accuracy and stability over the last decade that approached the level of 10^{-18}. This notable achievement along with the direct sensitivity of clocks to the strength of the gravitational field make them practically important for various geodetic applications that are addressed in the present paper. Based on a fully relativistic description of the background gravitational physics, we discuss the impact of those highly-precise clocks on the realization of reference frames and time scales used in geodesy. We discuss the current definitions of basic geodetic concepts and come to the conclusion that the advances in clocks and other metrological technologies will soon require the re-definition of time scales or, at least, clarification to ensure their continuity and consistent use in practice. The relative frequency shift between two clocks is directly related to the difference in the values of the gravity potential at the points of clock's localization. According to general relativity the relative accuracy of clocks in 10^{-18} is equivalent to measuring the gravitational red shift effect between two clocks with the height difference amounting to 1 cm. This makes the clocks an indispensable tool in high-precision geodesy in addition to laser ranging and space geodetic techniques. We show how clock measurements can provide geopotential numbers for the realization of gravity-field-related height systems and can resolve discrepancies in classically-determined height systems as well as between national height systems. Another application of clocks is the direct use of observed potential differences for the improved recovery of regional gravity field solutions. Finally, clock measurements for space-borne gravimetry are analyzed along with

  3. Optical clocks and their contribution to gravity modeling

    Science.gov (United States)

    Naeimi, Mohammad; Mohamadhosseini, Babak; Hatami, Mohsen

    2016-04-01

    Optical clocks, as one of the latest achievements in atomic and molecular physics, have applications more than timing, due to their accuracy and stability. In general relativity, gravitational potential differences in space and time, cause frequency difference in optical clocks. Hence, ultra precise optical clocks can be used as a tool to observe potential differences and consequently as a new gravimetry technique. In this contribution, we investigate the latest optical clocks based on atomic transition in Al+ and derive a simple equation for frequency change related to geo-potential differences. Moreover, we consider the capability of optical clocks for gravity modeling in combination with other gravity observations. Finally, the possibility to detect potential changes in geo-dynamically active zones, such as East-Asia and the requirements for such studies are discussed.

  4. One-liter Hg ion clock for space and ground applications

    Science.gov (United States)

    Prestage, John D.; Chung, Sang; Le, Thanh; Beach, Maggie; Maleki, Lute; Tjoelker, Robert L.

    2003-01-01

    We describe the development of a small Hg ion clock suitable for space use. A small clock occupying 1-2 liters volume and producing stability of 10 to the power negative twelve, divided by square root pi would significantly advance the state of space-qualified atomic clocks. Based on recent measurements, this technology should produce long-term stability as good as 10 to the power negative fifteen.

  5. Capacitance ratio-reduced and unity gain buffer-based SC integrator using three phase clocks

    OpenAIRE

    黒木, 伸一; 松本, 寛樹

    2011-01-01

    In this study, a capacitance ratio-reduced and unity gain buffer-based switched-capacitor integrator using three phase clocks is presented. Principle of operation is described and is also confirmed on SIMetrix. The purpose of this proposal circuit is to decrease the capacitor ratio of the SC integrator, and to improve the maximum frequency that can operate. Very large capacitance ratio is derived.

  6. CLOCK gene is implicated in weight reduction in obese patients participating in a dietary programme based on the Mediterranean diet.

    Science.gov (United States)

    Garaulet, M; Corbalán, M D; Madrid, J A; Morales, E; Baraza, J C; Lee, Y C; Ordovas, J M

    2010-03-01

    The success of obesity therapy is dependent on the genetic background of the patient. Circadian Locomotor Output Cycles Kaput (CLOCK), one of the transcription factors from the positive limb of the molecular clock, is involved in metabolic alterations. To investigate whether five candidate polymorphisms from CLOCK were associated with anthropometric, metabolic measures and weight loss in response to a behavioural weight reduction programme based on the Mediterranean diet. Five hundred overweight/obese subjects, aged 20-65 years, who attended outpatient clinics specializing in obesity, were studied. Anthropometric, biochemical and dietary intake variables were analysed. Effectiveness of the programme and weight loss progression during 28 weeks of treatment was assessed. Four of five CLOCK SNPs selected were significantly associated with obesity variables (PCLOCK was associated with obesity at baseline and also affected weight loss. Patients with the variant allele (G) lost significantly less weight i(P=0.008) compared with wild type. Repeated measures analysis showed that weight loss over time was significantly different between rs1801260 CLOCK variations (P=0.038). Carriers of the G allele displayed greater difficulty in losing weight than non-carriers. In this particular polymorphism, the frequency of short-time sleepers (CLOCK polymorphisms were also associated with significant differences in total plasma cholesterol at the completion of dietary treatment (PCLOCK gene polymorphisms and obesity. CLOCK rs1801260 SNP may predict the outcome of body weight reduction strategies based on low-energy diets.

  7. Hard and soft acids and bases: atoms and atomic ions.

    Science.gov (United States)

    Reed, James L

    2008-07-07

    The structural origin of hard-soft behavior in atomic acids and bases has been explored using a simple orbital model. The Pearson principle of hard and soft acids and bases has been taken to be the defining statement about hard-soft behavior and as a definition of chemical hardness. There are a number of conditions that are imposed on any candidate structure and associated property by the Pearson principle, which have been exploited. The Pearson principle itself has been used to generate a thermodynamically based scale of relative hardness and softness for acids and bases (operational chemical hardness), and a modified Slater model has been used to discern the electronic origin of hard-soft behavior. Whereas chemical hardness is a chemical property of an acid or base and the operational chemical hardness is an experimental measure of it, the absolute hardness is a physical property of an atom or molecule. A critical examination of chemical hardness, which has been based on a more rigorous application of the Pearson principle and the availability of quantitative measures of chemical hardness, suggests that the origin of hard-soft behavior for both acids and bases resides in the relaxation of the electrons not undergoing transfer during the acid-base interaction. Furthermore, the results suggest that the absolute hardness should not be taken as synonymous with chemical hardness but that the relationship is somewhat more complex. Finally, this work provides additional groundwork for a better understanding of chemical hardness that will inform the understanding of hardness in molecules.

  8. Low Power Consumption Digital Clock Recovery Circuit Based on Threshold Crossing

    Science.gov (United States)

    Perić, Dragana; Perić, Miroslav

    2016-12-01

    In this paper a new structure of digital clock recovery — DCR circuit is presented. The main features of this DCR are: low complexity design, low power consumption and a single system clock operation. Thus, multiple instantiation of this type of DCR on a single chip is not complex. Due to this, such DCR can target application in energy-efficient cognitive radio systems with carrier aggregation. For performance evaluation, we have derived Markov chain based mathematical model for peak-to-peak and root mean square jitter performance analysis. The stability problem of this model, rising from the fact that some phase error states have several orders of magnitude lower probabilities than the others, is solved using mathematical apparatus for symbolic analysis. The mathematical model validity is examined by laboratorial measurements of proposed DCR for 4-PAM signal. The measurement methodology and results are described in details.

  9. Phase noise analysis of clock recovery based on an optoelectronic phase-locked loop

    DEFF Research Database (Denmark)

    Zibar, Darko; Mørk, Jesper; Oxenløwe, Leif Katsuo

    2007-01-01

    A detailed theoretical analysis of a clock-recovery (CR) scheme based on an optoelectronic phase-locked loop is presented. The analysis emphasizes the phase noise performance, taking into account the noise of the input data signal, the local voltage-controlled oscillator (VCO), and the laser...... employed in the loop. The effects of loop time delay and the laser transfer function are included in the stochastic differential equations describing the system, and a detailed timing jitter analysis of this type of optoelectronic CR for high-speed optical-time-division-multiplexing systems is performed...

  10. Role of atoms in atomic gravitational-wave detectors

    Science.gov (United States)

    Norcia, Matthew A.; Cline, Julia R. K.; Thompson, James K.

    2017-10-01

    Recently, it has been proposed that space-based atomic sensors may be used to detect gravitational waves. These proposals describe the sensors either as clocks or as atom interferometers. Here, we seek to explore the fundamental similarities and differences between the two types of proposals. We present a framework in which the fundamental mechanism for sensitivity is identical for clock and atom interferometer proposals, with the key difference being whether or not the atoms are tightly confined by an external potential. With this interpretation in mind, we propose two major enhancements to detectors using confined atoms, which allow for an enhanced sensitivity analogous to large momentum transfer used in atom interferometry (though with no transfer of momentum to the atoms), and a way to extend the useful coherence time of the sensor beyond the atom's excited-state lifetime.

  11. All-optical clock recovery from 40 Gbit/s RZ signal based on microring resonators.

    Science.gov (United States)

    Xiong, Meng; Ding, Yunhong; Zhang, Qiang; Zhang, Xinliang

    2011-10-01

    A scheme for high-speed clock recovery from return-to-zero (RZ) signal with microring resonators is presented. By using a silicon microring resonator (MRR) for clock extraction and a 3-order nonlinear series-coupled microring resonator (SCMR) for amplitude equalization, clock pulses with amplitude modulation less than 1 dB can be obtained. The proposed scheme is also designed and numerically studied by 3D full vectorial film mode matching method (FMM) and coupled mode theory (CMT). Simulation results show that clock can be recovered at 40 Gbit/s with short rise- and fall- times.

  12. A strontium lattice clock with reduced blackbody radiation shift

    Energy Technology Data Exchange (ETDEWEB)

    Al-Masoudi, Ali Khalas Anfoos

    2016-09-30

    Optical clocks have been quickly moving to the forefront of the frequency standards field due to their high spectral resolution, and therefore the potential high stability and accuracy. The accuracy and stability of the optical clocks are nowadays two orders of magnitude better than microwave Cs clocks, which realize the SI second. Envisioned applications of highly accurate optical clocks are to perform tests of fundamental physics, for example, searching for temporal drifts of the fine structure constant α, violations of the Local Position Invariance (LPI), dark matter and dark energy, or to performance relativistic geodesy. In this work, the uncertainty of a strontium lattice clock, based on the {sup 1}S{sub 0}-{sup 3}P{sub 0} transition in {sup 87}Sr, due to the blackbody radiation (BBR) shift has been reduced to less than 1 x 10{sup -18} by more than one order of magnitude compared to the previous evaluation of the BBR shift uncertainty in this clock. The BBR shift has been reduced by interrogating the atoms in a cryogenic environment. The systematic uncertainty of the cryogenic lattice clock is evaluated to be 1.3 x 10{sup -17} which is dominated by the uncertainty of the AC Stark shift of the lattice laser and the uncertainty contribution of the BBR shift is negligible. Concerning the instability of the clock, the detection noise of the clock has been measured, and a model linking noise and clock instability has been developed. This noise model shows that, in our lattice clock, quantum projection noise is reached if more than 130 atoms are interrogated. By combining the noise model with the degradation due to the Dick effect reflecting the frequency noise of the interrogation laser, the instability of the clock is estimated to be 1.6 x 10{sup -16}/√(τ/s) in regular operation. During this work, several high-accuracy comparisons to other atomic clocks have been performed, including several absolute frequency measurements. The Sr clock transition frequency

  13. Laser heterodyne interferometric signal processing method based on rising edge locking with high frequency clock signal.

    Science.gov (United States)

    Zhang, Enzheng; Chen, Benyong; Yan, Liping; Yang, Tao; Hao, Qun; Dong, Wenjun; Li, Chaorong

    2013-02-25

    A novel phase measurement method composed of the rising-edge locked signal processing and the digital frequency mixing is proposed for laser heterodyne interferometer. The rising-edge locked signal processing, which employs a high frequency clock signal to lock the rising-edges of the reference and measurement signals, not only can improve the steepness of the rising-edge, but also can eliminate the error counting caused by multi-rising-edge phenomenon in fringe counting. The digital frequency mixing is realized by mixing the digital interference signal with a digital base signal that is different from conventional frequency mixing with analogue signals. These signal processing can improve the measurement accuracy and enhance anti-interference and measurement stability. The principle and implementation of the method are described in detail. An experimental setup was constructed and a series of experiments verified the feasibility of the method in large displacement measurement with high speed and nanometer resolution.

  14. First observation of the strongly forbidden transition {sup 1}S{sub 0} - {sup 3}P{sub 0} in Strontium, for an atomic clock with trapped atoms; Premiere observation de la transition fortement interdite {sup 1}S{sub 0} - {sup 3}P{sub 0} du strontium, pour une horloge optique a atomes pieges

    Energy Technology Data Exchange (ETDEWEB)

    Courtillot, I

    2003-11-01

    This thesis reports the first results towards the realization of an optical clock using trapped strontium atoms. This set up would combine advantages of the different approaches commonly used to develop an atomic frequency standard. The first part describes the cold atoms source which is implemented. A magneto-optical trap operating on the {sup 1}S{sub 0}-{sup 1}P{sub 1} transition at 461 nm is loaded from an atomic beam decelerated by a Zeeman slower. The 461 nm laser is obtained by sum-frequency mixing in a potassium titanyl phosphate (KTP) crystal. The second part is devoted to the different stages developed to achieve the direct excitation of the {sup 1}S{sub 0}-{sup 3}P{sub 0} clock transition in {sup 87}Sr. This line has a theoretical natural width of 10{sup -3} Hz. Before this detection, we obtained an estimate of the resonance frequency by measuring absolute frequencies of several allowed optical transitions. (author)

  15. Accelerating Atomic Orbital-based Electronic Structure Calculation via Pole Expansion plus Selected Inversion

    Energy Technology Data Exchange (ETDEWEB)

    Lin, Lin; Chen, Mohan; Yang, Chao; He, Lixin

    2012-02-10

    We describe how to apply the recently developed pole expansion plus selected inversion (PEpSI) technique to Kohn-Sham density function theory (DFT) electronic structure calculations that are based on atomic orbital discretization. We give analytic expressions for evaluating charge density, total energy, Helmholtz free energy and atomic forces without using the eigenvalues and eigenvectors of the Kohn-Sham Hamiltonian. We also show how to update the chemical potential without using Kohn-Sham eigenvalues. The advantage of using PEpSI is that it has a much lower computational complexity than that associated with the matrix diagonalization procedure. We demonstrate the performance gain by comparing the timing of PEpSI with that of diagonalization on insulating and metallic nanotubes. For these quasi-1D systems, the complexity of PEpSI is linear with respect to the number of atoms. This linear scaling can be observed in our computational experiments when the number of atoms in a nanotube is larger than a few hundreds. Both the wall clock time and the memory requirement of PEpSI is modest. This makes it even possible to perform Kohn-Sham DFT calculations for 10,000-atom nanotubes on a single processor. We also show that the use of PEpSI does not lead to loss of accuracy required in a practical DFT calculation.

  16. Multifold clock recovery and demultiplexing based on a polarization-dependent phase modulator incorporated frequency-doubling optoelectronic oscillator

    Science.gov (United States)

    Tang, Yu; Wang, Muguang; Sun, Jian; Wu, Beilei; Zhang, Jing; Ding, Qi; Li, Tangjun

    2017-11-01

    A novel multifold clock recovery structure with demultiplexing function based on a frequency-doubling optoelectronic oscillator (FD-OEO) incorporating a common commercial phase modulator (PM) is proposed and experimentally demonstrated. A special phase modulation is obtained thanks to polarization-sensitive feature of LiNbO3 crystal of the PM. The special phase modulated signal is then split two parts connected by two pairs of polarization controllers (PCs) and polarizers to perform polarization interference and phase modulation to intensity modulation conversion. By controlling the PCs, the joint use of PC and polarizer in the loop is to guarantee an OEO with fundamental frequency self-oscillation, while the other outside of the OEO obtains frequency-doubled microwave signal at the output of the photodetector. Additionally, an optical filter can be inserted into the outside branch to only allow ±2nd-order sidebands pass through and realize frequency quadrupling after beating at the PD. Therefore, a prescaled clock at 10 GHz, a line-rate clock at 20 GHz and a 40 GHz frequency-doubled clock can be extracted from the injection-locked OEO respectively when a 2 × 10 Gb / s optical time division multiplexing (OTDM) data signal is injected. A twofold time division demultiplexing is demonstrated. Theoretical analysis is developed, which is validated by an experiment.

  17. Real-Time PPP Based on the Coupling Estimation of Clock Bias and Orbit Error with Broadcast Ephemeris.

    Science.gov (United States)

    Pan, Shuguo; Chen, Weirong; Jin, Xiaodong; Shi, Xiaofei; He, Fan

    2015-07-22

    Satellite orbit error and clock bias are the keys to precise point positioning (PPP). The traditional PPP algorithm requires precise satellite products based on worldwide permanent reference stations. Such an algorithm requires considerable work and hardly achieves real-time performance. However, real-time positioning service will be the dominant mode in the future. IGS is providing such an operational service (RTS) and there are also commercial systems like Trimble RTX in operation. On the basis of the regional Continuous Operational Reference System (CORS), a real-time PPP algorithm is proposed to apply the coupling estimation of clock bias and orbit error. The projection of orbit error onto the satellite-receiver range has the same effects on positioning accuracy with clock bias. Therefore, in satellite clock estimation, part of the orbit error can be absorbed by the clock bias and the effects of residual orbit error on positioning accuracy can be weakened by the evenly distributed satellite geometry. In consideration of the simple structure of pseudorange equations and the high precision of carrier-phase equations, the clock bias estimation method coupled with orbit error is also improved. Rovers obtain PPP results by receiving broadcast ephemeris and real-time satellite clock bias coupled with orbit error. By applying the proposed algorithm, the precise orbit products provided by GNSS analysis centers are rendered no longer necessary. On the basis of previous theoretical analysis, a real-time PPP system was developed. Some experiments were then designed to verify this algorithm. Experimental results show that the newly proposed approach performs better than the traditional PPP based on International GNSS Service (IGS) real-time products. The positioning accuracies of the rovers inside and outside the network are improved by 38.8% and 36.1%, respectively. The PPP convergence speeds are improved by up to 61.4% and 65.9%. The new approach can change the

  18. An improved adaptive interpolation clock recovery loop based on phase splitting algorithm for coherent optical communication system

    Science.gov (United States)

    Liu, Xuan; Liu, Bo; Zhang, Li-jia; Xin, Xiang-jun; Zhang, Qi; Wang, Yong-jun; Tian, Qing-hua; Tian, Feng; Mao, Ya-ya

    2018-01-01

    Traditional clock recovery scheme achieves timing adjustment by digital interpolation, thus recovering the sampling sequence. Based on this, an improved clock recovery architecture joint channel equalization for coherent optical communication system is presented in this paper. The loop is different from the traditional clock recovery. In order to reduce the interpolation error caused by the distortion in the frequency domain of the interpolator and to suppress the spectral mirroring generated by the sampling rate change, the proposed algorithm joint equalization, improves the original interpolator in the loop, along with adaptive filtering, and makes error compensation for the original signals according to the balanced pre-filtering signals. Then the signals are adaptive interpolated through the feedback loop. Furthermore, the phase splitting timing recovery algorithm is adopted in this paper. The time error is calculated according to the improved algorithm when there is no transition between the adjacent symbols, making calculated timing error more accurate. Meanwhile, Carrier coarse synchronization module is placed before the beginning of timing recovery to eliminate the larger frequency offset interference, which effectively adjust the sampling clock phase. In this paper, the simulation results show that the timing error is greatly reduced after the loop is changed. Based on the phase splitting algorithm, the BER and MSE are better than those in the unvaried architecture. In the fiber channel, using MQAM modulation format, after 100 km-transmission of single-mode fiber, especially when ROF(roll-off factor) values tends to 0, the algorithm shows a better clock performance under different ROFs. When SNR values are less than 8, the BER could achieve 10-2 to 10-1 magnitude. Furthermore, the proposed timing recovery is more suitable for the situation with low SNR values.

  19. Performances evaluation of the PHARAO atomic fountain: participation to the study of the PHARAO space clock; Evaluation des performances de la fontaine atomique PHARAO, participation a l'etude de l'horloge spatiale PHARAO

    Energy Technology Data Exchange (ETDEWEB)

    Abgrall, M

    2003-01-01

    The performances of an atomic frequency standard depend drastically on the observation time of the atoms. The interrogation of laser cooled atoms allows to obtain about half a second interaction time in a fountain geometry. This duration could be much more varied in absence of gravity, and would allow a better trade-off between stability and accuracy. The application of this principle is the aim of the PHARAO project, that should attend to the ACES mission planned in 2006 onboard the International Space Station. The first part of this thesis deals with the cold Cs{sup 133} PHARAO fountain. This clock stems from the transformation of a space clock prototype previously tested in microgravity. A detailed evaluation of the whole frequency shifts has been carried out, reaching a 7.7 10{sup -16} accuracy and a 1.7 10{sup -13}{tau}{sup -1/2} short term stability. These values are obtained for 4 10{sup 5} detected atoms, that provides a good stability-accuracy trade-off. This transportable fountain, built at BNM-SYRTE, has been operating at MPQ in Munich (Germany). The collaboration between the 2 laboratories gave a {approx} 10 improvement factor on the measurement accuracy (1.8 10{sup -14}) for the 1S - 2S two photons hydrogen transition. In a second part of this thesis, we present the characterisation of 2 elements of the PHARAO space clock: the construction of a standard extended cavity laser and the test of the phase symmetry between the two interrogating areas of the space cavity. (author)

  20. RighTime: A real time clock correcting program for MS-DOS-based computer systems

    Science.gov (United States)

    Becker, G. Thomas

    1993-01-01

    A computer program is described which effectively eliminates the misgivings of the DOS system clock in PC/AT-class computers. RighTime is a small, sophisticated memory-resident program that automatically corrects both the DOS system clock and the hardware 'CMOS' real time clock (RTC) in real time. RighTime learns what corrections are required without operator interaction beyond the occasional accurate time set. Both warm (power on) and cool (power off) errors are corrected, usually yielding better than one part per million accuracy in the typical desktop computer with no additional hardware, and RighTime increases the system clock resolution from approximately 0.0549 second to 0.01 second. Program tools are also available which allow visualization of RighTime's actions, verification of its performance, display of its history log, and which provide data for graphing of the system clock behavior. The program has found application in a wide variety of industries, including astronomy, satellite tracking, communications, broadcasting, transportation, public utilities, manufacturing, medicine, and the military.

  1. Development of a strontium optical lattice clock for space applications

    Science.gov (United States)

    Singh, Yeshpal

    2016-07-01

    With timekeeping being of paramount importance for modern life, much research and major scientific advances have been undertaken in the field of frequency metrology, particularly over the last few years. New Nobel-prize winning technologies have enabled a new era of atomic clocks; namely the optical clock. These have been shown to perform significantly better than the best microwave clocks reaching an inaccuracy of 1.6x10-18 [1]. With such results being found in large lab based apparatus, the focus now has shifted to portability - to enable the accuracy of various ground based clocks to be measured, and compact autonomous performance - to enable such technologies to be tested in space. This could lead to a master clock in space, improving not only the accuracy of technologies on which modern life has come to require such as GPS and communication networks. But also more fundamentally, this could lead to the redefinition of the second and tests of fundamental physics including applications in the fields of ground based and satellite geodesy, metrology, positioning, navigation, transport and logistics etc. Within the European collaboration, Space Optical Clocks (SOC2) [2-3] consisting of various institutes and industry partners across Europe we have tried to tackle this problem of miniaturisation whilst maintaining stability, accuracy (5x10-17) and robustness whilst keeping power consumption to a minimum - necessary for space applications. We will present the most recent results of the Sr optical clock in SOC2 and also the novel compact design features, new methods employed and outlook. References [1] B. J. Bloom, T. L. Nicholson, J. R. Williams, S. L. Campbell, M. Bishof, X. Zhang, W. Zhang, S. L. Bromley, and J. Ye, "An optical lattice clock with accuracy and stability at the 10-18 level," Nature 506, 71-75 (2014). [2] S. Schiller et al. "Towards Neutral-atom Space Optical Clocks (SOC2): Development of high-performance transportable and breadboard optical clocks and

  2. Comparison of the Clock Test and a questionnaire-based test for ...

    African Journals Online (AJOL)

    Background: Since it is projected that by 2020 seventy percent of the elderly will reside in developing countries, a reliable screening method for dementia and cognitive impairment in general in populations with diverse languages, culture, education and literacy will be needed. We sought to determine if the Clock Test, ...

  3. Ultrafast Phase Comparator for Phase-Locked Loop-Based Optoelectronic Clock Recovery Systems

    DEFF Research Database (Denmark)

    Gomez-Agis, F.; Oxenløwe, Leif Katsuo; Kurimura, S.

    2009-01-01

    The authors report on a novel application of a chi((2)) nonlinear optical device as an ultrafast phase comparator, an essential element that allows an optoelectronic phase-locked loop to perform clock recovery of ultrahigh-speed optical time-division multiplexed (OTDM) signals. Particular interest...

  4. High-performance coherent population trapping clock with polarization modulation

    CERN Document Server

    Yun, Peter; Calosso, Claudio Eligio; Micalizio, Salvatore; François, Bruno; Boudot, Rodolphe; Guérandel, Stéphane; de Clercq, Emeric

    2016-01-01

    We demonstrate a vapor cell atomic clock prototype based on continuous-wave (CW) interrogation and double-modulation coherent population trapping (DM-CPT) technique. The DM-CPT technique uses a synchronous modulation of polarization and relative phase of a bi-chromatic laser beam in order to increase the number of atoms trapped in a dark state, i.e. a non-absorbing state. The narrow resonance, observed in transmission of a Cs vapor cell, is used as a narrow frequency discriminator in an atomic clock. A detailed characterization of the CPT resonance versus numerous parameters is reported. A short-term frequency stability of $3.2 \\times 10^{-13} \\tau^{-1/2}$ up to 100 s averaging time is measured. These performances are more than one order of magnitude better than industrial Rb clocks and comparable to those of best laboratory-prototype vapor cell clocks. The noise budget analysis shows that the short and mid-term frequency stability is mainly limited by the power fluctuations of the microwave used to generate ...

  5. Spreadsheet-Based Program for Simulating Atomic Emission Spectra

    Science.gov (United States)

    Flannigan, David J.

    2014-01-01

    A simple Excel spreadsheet-based program for simulating atomic emission spectra from the properties of neutral atoms (e.g., energies and statistical weights of the electronic states, electronic partition functions, transition probabilities, etc.) is described. The contents of the spreadsheet (i.e., input parameters, formulas for calculating…

  6. Decamp Clock Board Firmware

    Energy Technology Data Exchange (ETDEWEB)

    Vicente, J. de; Castilla, J.; Martinez, G.

    2007-09-27

    Decamp (Dark Energy Survey Camera) is a new instrument designed to explore the universe aiming to reveal the nature of Dark Energy. The camera consists of 72 CCDs and 520 Mpixels. The readout electronics of DECam is based on the Monsoon system. Monsoon is a new image acquisition system developed by the NOAO (National Optical Astronomical Observatory) for the new generation of astronomical cameras. The Monsoon system uses three types of boards inserted in a Eurocard format based crate: master control board, acquisition board and clock board. The direct use of the Monsoon system for DECam readout electronics requires nine crates mainly due to the high number of clock boards needed. Unfortunately, the available space for DECam electronics is constrained to four crates at maximum. The major drawback to achieve such desired compaction degree resides in the clock board signal density. This document describes the changes performed at CIEMAT on the programmable logic of the Monsoon clock board aiming to meet such restricted space constraints. (Author) 5 refs.

  7. Automatic control of clock duty cycle

    Science.gov (United States)

    Feng, Xiaoxin (Inventor); Roper, Weston (Inventor); Seefeldt, James D. (Inventor)

    2010-01-01

    In general, this disclosure is directed to a duty cycle correction (DCC) circuit that adjusts a falling edge of a clock signal to achieve a desired duty cycle. In some examples, the DCC circuit may generate a pulse in response to a falling edge of an input clock signal, delay the pulse based on a control voltage, adjust the falling edge of the input clock signal based on the delayed pulse to produce an output clock signal, and adjust the control voltage based on the difference between a duty cycle of the output clock signal and a desired duty cycle. Since the DCC circuit adjusts the falling edge of the clock cycle to achieve a desired duty cycle, the DCC may be incorporated into existing PLL control loops that adjust the rising edge of a clock signal without interfering with the operation of such PLL control loops.

  8. Manipulating Neutral Atoms in Chip-Based Magnetic Traps

    Science.gov (United States)

    Aveline, David; Thompson, Robert; Lundblad, Nathan; Maleki, Lute; Yu, Nan; Kohel, James

    2009-01-01

    Several techniques for manipulating neutral atoms (more precisely, ultracold clouds of neutral atoms) in chip-based magnetic traps and atomic waveguides have been demonstrated. Such traps and waveguides are promising components of future quantum sensors that would offer sensitivities much greater than those of conventional sensors. Potential applications include gyroscopy and basic research in physical phenomena that involve gravitational and/or electromagnetic fields. The developed techniques make it possible to control atoms with greater versatility and dexterity than were previously possible and, hence, can be expected to contribute to the value of chip-based magnetic traps and atomic waveguides. The basic principle of these techniques is to control gradient magnetic fields with suitable timing so as to alter a trap to exert position-, velocity-, and/or time-dependent forces on atoms in the trap to obtain desired effects. The trap magnetic fields are generated by controlled electric currents flowing in both macroscopic off-chip electromagnet coils and microscopic wires on the surface of the chip. The methods are best explained in terms of examples. Rather than simply allowing atoms to expand freely into an atomic waveguide, one can give them a controllable push by switching on an externally generated or a chip-based gradient magnetic field. This push can increase the speed of the atoms, typically from about 5 to about 20 cm/s. Applying a non-linear magnetic-field gradient exerts different forces on atoms in different positions a phenomenon that one can exploit by introducing a delay between releasing atoms into the waveguide and turning on the magnetic field.

  9. Ytterbium optical lattice clock with 10-18 level characterization

    Science.gov (United States)

    Phillips, Nathaniel; Sherman, Jeff; Beloy, Kyle; Hinkley, Nathan; Schioppo, Marco; Oates, Chris; Ludlow, Andrew

    2014-05-01

    A recent comparison of two ytterbium-based optical lattice clocks at NIST demonstrated record stability of 1 . 6 parts in 1018 after 25,000s averaging. We report on measurements of the two primary systematic effects that shift the ultra-narrow clock transition, towards a reduction of the clock uncertainty to the 10-18 level. Uncertainty stemming from the blackbody radiation (BBR) shift is largely due to imprecise knowledge of the thermal environment surrounding the atoms. We detail the construction and operation of an in-vacuum, thermally-regulated radiation shield, which permits laser cooling and trapping while enabling an absolute temperature measurement with mK precision. Additionally, while operation of the optical lattice at the magic wavelength (λm) cancels the scalar Stark shift (since both clock states shift equally), higher-order vector and two-photon hyperpolarizability shifts remain. To evaluate these effects, as well as the polarizability away from λm, we implement a lattice buildup cavity around the atoms. The resulting twenty-fold enhancement of the lattice intensity provides a significant lever arm for precise measurement of these effects.

  10. Legal Time of the Republic of Colombia and its international traceability using the Cesium Atomic Clock - Time and Frequency National Standard

    Science.gov (United States)

    Hernández Forero, Liz Catherine; Bahamón Cortés, Nelson

    2017-06-01

    Around the world, there are different providers of timestamp (mobile, radio or television operators, satellites of the GPS network, astronomical measurements, etc.), however, the source of the legal time for a country is either the national metrology institute or another designated laboratory. This activity requires a time standard based on an atomic time scale. The International Bureau of Weights and Measures (BIPM) calculates a weighted average of the time kept in more than 60 nations and produces a single international time scale, called Coordinated Universal Time (UTC). This article presents the current time scale that generates Legal Time for the Republic of Colombia produced by the Instituto Nacional de Metrología (INM) using the time and frequency national standard, a cesium atomic oscillator. It also illustrates how important it is for the academic, scientific and industrial communities, as well as the general public, to be synchronized with this time scale, which is traceable to the International System (SI) of units, through international comparisons that are made in real time.

  11. A HTML5 open source tool to conduct studies based on Libet’s clock paradigm

    Science.gov (United States)

    Garaizar, Pablo; Cubillas, Carmelo P.; Matute, Helena

    2016-01-01

    Libet’s clock is a well-known procedure in experiments in psychology and neuroscience. Examples of its use include experiments exploring the subjective sense of agency, action-effect binding, and subjective timing of conscious decisions and perceptions. However, the technical details of the apparatus used to conduct these types of experiments are complex, and are rarely explained in sufficient detail as to guarantee an exact replication of the procedure. With this in mind, we developed Labclock Web, a web tool designed to conduct online and offline experiments using Libet’s clock. After describing its technical features, we explain how to configure specific experiments using this tool. Its degree of accuracy and precision in the presentation of stimuli has been technically validated, including the use of two cognitive experiments conducted with voluntary participants who performed the experiment both in our laboratory and via the Internet. Labclock Web is distributed without charge under a free software license (GPLv3) since one of our main objectives is to facilitate the replication of experiments and hence the advancement of knowledge in this area. PMID:27623167

  12. A HTML5 open source tool to conduct studies based on Libet's clock paradigm.

    Science.gov (United States)

    Garaizar, Pablo; Cubillas, Carmelo P; Matute, Helena

    2016-09-13

    Libet's clock is a well-known procedure in experiments in psychology and neuroscience. Examples of its use include experiments exploring the subjective sense of agency, action-effect binding, and subjective timing of conscious decisions and perceptions. However, the technical details of the apparatus used to conduct these types of experiments are complex, and are rarely explained in sufficient detail as to guarantee an exact replication of the procedure. With this in mind, we developed Labclock Web, a web tool designed to conduct online and offline experiments using Libet's clock. After describing its technical features, we explain how to configure specific experiments using this tool. Its degree of accuracy and precision in the presentation of stimuli has been technically validated, including the use of two cognitive experiments conducted with voluntary participants who performed the experiment both in our laboratory and via the Internet. Labclock Web is distributed without charge under a free software license (GPLv3) since one of our main objectives is to facilitate the replication of experiments and hence the advancement of knowledge in this area.

  13. A Nanofiber-Based Optical Conveyor Belt for Cold Atoms

    CERN Document Server

    Schneeweiss, Philipp; Mitsch, Rudolf; Reitz, Daniel; Vetsch, Eugen; Rauschenbeutel, Arno

    2012-01-01

    We demonstrate optical transport of cold cesium atoms over millimeter-scale distances along an optical nanofiber. The atoms are trapped in a one-dimensional optical lattice formed by a two-color evanescent field surrounding the nanofiber, far red- and blue-detuned with respect to the atomic transition. The blue-detuned field is a propagating nanofiber-guided mode while the red-detuned field is a standing-wave mode which leads to the periodic axial confinement of the atoms. Here, this standing wave is used for transporting the atoms along the nanofiber by mutually detuning the two counter-propagating fields which form the standing wave. The performance and limitations of the nanofiber-based transport are evaluated and possible applications are discussed.

  14. SOA-based clock recovery and demultiplexing in a lab trial of 640-Gb/s OTDM transmission over 50-km fibre link

    DEFF Research Database (Denmark)

    Tangdiongga, E.; Mulvad, Hans Christian Hansen; Waardt, H. de

    2007-01-01

    We report for the first time SOA-based clock recovery and demultiplexing of 40-Gb/s channels from 640 Gb/s OTDM signals over 50-km link. The system operates at low power and has the potential to be integrated.......We report for the first time SOA-based clock recovery and demultiplexing of 40-Gb/s channels from 640 Gb/s OTDM signals over 50-km link. The system operates at low power and has the potential to be integrated....

  15. Metamaterial perfect absorber based on artificial dielectric "atoms".

    Science.gov (United States)

    Liu, Xiaoming; Bi, Ke; Li, Bo; Zhao, Qian; Zhou, Ji

    2016-09-05

    In this work, we numerically designed and then experimentally verified a metamaterial perfect absorber based on artificial dielectric "atoms". This metamaterial absorber is composed of dielectric ceramic material (SrTiO3) "atoms" embedded in a background matrix on a metal plate. The dielectric "atoms" couple strongly to the incident electric and magnetic fields at the Mie resonance mode, leading to the narrow perfect absorption band with simulated and experimental absorptivities of 99% and 98.5% at 8.96 GHz, respectively. The designed metamaterial perfect absorber is polarization insensitive and can operate in wide angle incidence.

  16. Rydberg-atom-based scheme of nonadiabatic geometric quantum computation

    Science.gov (United States)

    Zhao, P. Z.; Cui, Xiao-Dan; Xu, G. F.; Sjöqvist, Erik; Tong, D. M.

    2017-11-01

    Nonadiabatic geometric quantum computation provides a means to perform fast and robust quantum gates. It has been implemented in various physical systems, such as trapped ions, nuclear magnetic resonance, and superconducting circuits. Another system being adequate for implementation of nonadiabatic geometric quantum computation may be Rydberg atoms, since their internal states have very long coherence time and the Rydberg-mediated interaction facilitates the implementation of a two-qubit gate. Here, we propose a scheme of nonadiabatic geometric quantum computation based on Rydberg atoms, which combines the robustness of nonadiabatic geometric gates with the merits of Rydberg atoms.

  17. Synthetic Spin-Orbit Coupling in an Optical Lattice Clock

    Science.gov (United States)

    Wall, Michael L.; Koller, Andrew P.; Li, Shuming; Zhang, Xibo; Cooper, Nigel R.; Ye, Jun; Rey, Ana Maria

    2016-01-01

    We propose the use of optical lattice clocks operated with fermionic alkaline-earth atoms to study spin-orbit coupling (SOC) in interacting many-body systems. The SOC emerges naturally during the clock interrogation, when atoms are allowed to tunnel and accumulate a phase set by the ratio of the "magic" lattice wavelength to the clock transition wavelength. We demonstrate how standard protocols such as Rabi and Ramsey spectroscopy that take advantage of the sub-Hertz resolution of state-of-the-art clock lasers can perform momentum-resolved band tomography and determine SOC-induced s -wave collisions in nuclear-spin-polarized fermions. With the use of a second counterpropagating clock beam, we propose a method for engineering controlled atomic transport and study how it is modified by p - and s -wave interactions. The proposed spectroscopic probes provide clean and well-resolved signatures at current clock operating temperatures.

  18. Synthetic Spin-Orbit Coupling in an Optical Lattice Clock.

    Science.gov (United States)

    Wall, Michael L; Koller, Andrew P; Li, Shuming; Zhang, Xibo; Cooper, Nigel R; Ye, Jun; Rey, Ana Maria

    2016-01-22

    We propose the use of optical lattice clocks operated with fermionic alkaline-earth atoms to study spin-orbit coupling (SOC) in interacting many-body systems. The SOC emerges naturally during the clock interrogation, when atoms are allowed to tunnel and accumulate a phase set by the ratio of the "magic" lattice wavelength to the clock transition wavelength. We demonstrate how standard protocols such as Rabi and Ramsey spectroscopy that take advantage of the sub-Hertz resolution of state-of-the-art clock lasers can perform momentum-resolved band tomography and determine SOC-induced s-wave collisions in nuclear-spin-polarized fermions. With the use of a second counterpropagating clock beam, we propose a method for engineering controlled atomic transport and study how it is modified by p- and s-wave interactions. The proposed spectroscopic probes provide clean and well-resolved signatures at current clock operating temperatures.

  19. CLOCK gene is implicated in weight reduction in obese patients participating in a dietary programme based on the Mediterranean diet

    Science.gov (United States)

    Introduction: The success of obesity therapy is dependent on the genetic background of the patient. Circadian Locomotor Output Cycles Kaput (CLOCK), one of the transcription factors from the positive limb of the molecular clock, is involved in metabolic alterations. Objective: To investigate whethe...

  20. The Casimir atomic pendulum

    Energy Technology Data Exchange (ETDEWEB)

    Razmi, H. [Department of Physics, University of Qom, Qom 37185-359 (Iran, Islamic Republic of)], E-mail: razmi@qom.ac.ir; Abdollahi, M. [Department of Physics, University of Qom, Qom 37185-359 (Iran, Islamic Republic of)], E-mail: mah.abdollahi@gmail.com

    2008-11-10

    We want to introduce an atomic pendulum whose driving force (torque) is due to the quantum vacuum fluctuations. Applying the well-known Casimir-Polder effect to a special configuration (a combined structure of an atomic nanostring and a conducting plate), an atomic pendulum (Casimir atomic pendulum) is designed. Using practically acceptable data corresponding to the already known world of nanotechnology and based on reasonable/reliable numerical estimates, the period of oscillation for the pendulum is computed. This pendulum can be considered as both a new micro(nano)-electromechanical system and a new simple vacuum machine. Its design may be considered as a first step towards realizing the visualized vacuum (Casimir) clock{exclamation_point}.

  1. The Casimir atomic pendulum

    Science.gov (United States)

    Razmi, H.; Abdollahi, M.

    2008-11-01

    We want to introduce an atomic pendulum whose driving force (torque) is due to the quantum vacuum fluctuations. Applying the well-known Casimir-Polder effect to a special configuration (a combined structure of an atomic nanostring and a conducting plate), an atomic pendulum (Casimir atomic pendulum) is designed. Using practically acceptable data corresponding to the already known world of nanotechnology and based on reasonable/reliable numerical estimates, the period of oscillation for the pendulum is computed. This pendulum can be considered as both a new micro(nano)-electromechanical system and a new simple vacuum machine. Its design may be considered as a first step towards realizing the visualized vacuum (Casimir) clock!

  2. Atomic Action Refinement in Model Based Testing

    NARCIS (Netherlands)

    van der Bijl, H.M.; Rensink, Arend; Tretmans, G.J.

    2007-01-01

    In model based testing (MBT) test cases are derived from a specification of the system that we want to test. In general the specification is more abstract than the implementation. This may result in 1) test cases that are not executable, because their actions are too abstract (the implementation

  3. Breast cancer risk, nightwork, and circadian clock gene polymorphisms

    National Research Council Canada - National Science Library

    Truong, Thérèse; Liquet, Benoît; Menegaux, Florence; Plancoulaine, Sabine; Laurent-Puig, Pierre; Mulot, Claire; Cordina-Duverger, Emilie; Sanchez, Marie; Arveux, Patrick; Kerbrat, Pierre; Richardson, Sylvia; Guénel, Pascal

    2014-01-01

    ...) in 23 circadian clock genes. We also used a gene- and pathway-based approach to investigate the overall effect on breast cancer of circadian clock gene variants that might not be detected in analyses based on individual SNPs...

  4. Entanglement of quantum clocks through gravity.

    Science.gov (United States)

    Castro Ruiz, Esteban; Giacomini, Flaminia; Brukner, Časlav

    2017-03-21

    In general relativity, the picture of space-time assigns an ideal clock to each world line. Being ideal, gravitational effects due to these clocks are ignored and the flow of time according to one clock is not affected by the presence of clocks along nearby world lines. However, if time is defined operationally, as a pointer position of a physical clock that obeys the principles of general relativity and quantum mechanics, such a picture is, at most, a convenient fiction. Specifically, we show that the general relativistic mass-energy equivalence implies gravitational interaction between the clocks, whereas the quantum mechanical superposition of energy eigenstates leads to a nonfixed metric background. Based only on the assumption that both principles hold in this situation, we show that the clocks necessarily get entangled through time dilation effect, which eventually leads to a loss of coherence of a single clock. Hence, the time as measured by a single clock is not well defined. However, the general relativistic notion of time is recovered in the classical limit of clocks.

  5. 320 Gbps to 10 GHz sub-clock recovery using a PPLN-based opto-electronic phase-locked loop.

    Science.gov (United States)

    Ware, Cédric; Oxenløwe, Leif K; Gómez Agis, Fausto; Mulvad, Hans C; Galili, Michael; Kurimura, Sunao; Nakajima, Hirochika; Ichikawa, Junichiro; Erasme, Didier; Clausen, Anders T; Jeppesen, Palle

    2008-03-31

    We present successful extraction of a 10 GHz clock from single-wavelength 160 and 320 Gbps OTDM data streams, using an opto-electronic phase-locked loop based on three-wave mixing in periodically-poled lithium niobate as a phase comparator.

  6. The Satellite Clock Bias Forecast Based on Empirical Mode Decomposition and Least Squares Support Vector Machines

    Science.gov (United States)

    Lei, Y.; Zhao, D. N.

    2014-05-01

    In order to solve the nonlinear and non-stationary characteristics of satellite clock bias (SCB), a hybrid model combining the empirical mode decomposition (EMD) and least squares support vector machines (LSSVM) for the SCB forecasting is proposed in this paper. The main ideas are as follows: the single difference sequence is firstly obtained by making difference between two SCB values of adjacent epoch, and then the EMD is used to decompose the difference sequence into several intrinsic mode function (IMF) components, and one residual component. Secondly, the LSSVM are constructed to forecast these IMFs and residual values individually, and then all these forecasted values are aggregated to produce the forecasted value for the single difference. Finally, the forecasted single difference sequence is recovered to the corresponding predicted SCB. The GPS satellites are taken for example, and the prediction experiments are carried out so as to verify the feasibility and validity of the proposed algorithm. The simulation results show that the proposed EMD-LSSVM model can be employed to predict the SCB effectively, whose predicted accuracy is better than those of the quadratic polynomial (QP) and grey models, as well as the LSSVM model without time series decomposition.

  7. Integration of Bayesian molecular clock methods and fossil-based soft bounds reveals early Cenozoic origin of African lacertid lizards

    Directory of Open Access Journals (Sweden)

    Metzler Dirk

    2009-07-01

    Full Text Available Abstract Background Although current molecular clock methods offer greater flexibility in modelling evolutionary events, calibration of the clock with dates from the fossil record is still problematic for many groups. Here we implement several new approaches in molecular dating to estimate the evolutionary ages of Lacertidae, an Old World family of lizards with a poor fossil record and uncertain phylogeny. Four different models of rate variation are tested in a new program for Bayesian phylogenetic analysis called TreeTime, based on a combination of mitochondrial and nuclear gene sequences. We incorporate paleontological uncertainty into divergence estimates by expressing multiple calibration dates as a range of probabilistic distributions. We also test the reliability of our proposed calibrations by exploring effects of individual priors on posterior estimates. Results According to the most reliable model, as indicated by Bayes factor comparison, modern lacertids arose shortly after the K/T transition and entered Africa about 45 million years ago, with the majority of their African radiation occurring in the Eocene and Oligocene. Our findings indicate much earlier origins for these clades than previously reported, and we discuss our results in light of paleogeographic trends during the Cenozoic. Conclusion This study represents the first attempt to estimate evolutionary ages of a specific group of reptiles exhibiting uncertain phylogenetic relationships, molecular rate variation and a poor fossil record. Our results emphasize the sensitivity of molecular divergence dates to fossil calibrations, and support the use of combined molecular data sets and multiple, well-spaced dates from the fossil record as minimum node constraints. The bioinformatics program used here, TreeTime, is publicly available, and we recommend its use for molecular dating of taxa faced with similar challenges.

  8. Transcriptional architecture of the mammalian circadian clock.

    Science.gov (United States)

    Takahashi, Joseph S

    2017-03-01

    Circadian clocks are endogenous oscillators that control 24-hour physiological and behavioural processes in organisms. These cell-autonomous clocks are composed of a transcription-translation-based autoregulatory feedback loop. With the development of next-generation sequencing approaches, biochemical and genomic insights into circadian function have recently come into focus. Genome-wide analyses of the clock transcriptional feedback loop have revealed a global circadian regulation of processes such as transcription factor occupancy, RNA polymerase II recruitment and initiation, nascent transcription, and chromatin remodelling. The genomic targets of circadian clocks are pervasive and are intimately linked to the regulation of metabolism, cell growth and physiology.

  9. Lego clocks : building a clock from parts

    NARCIS (Netherlands)

    Brunner, Michael; Simons, Mirre J. P.; Merrow, Martha

    2008-01-01

    A new finding opens up speculation that the molecular mechanism of circadian clocks in Synechococcus elongatus is composed of multiple oscillator systems (Kitayama and colleagues, this issue, pp. 1513-1521), as has been described in many eukaryotic clock model systems. However, an alternative

  10. Clock controls timing of mouse pancreatic differentiation through regulation of Wnt- and Notch-based and cell division components.

    Science.gov (United States)

    Li, Zhixing; Ruan, Lingjuan; Lin, Shuibin; Gittes, George K

    2007-08-03

    The oscillations of circadian genes control the daily circadian clock, regulating a diverse array of physiologies with the 24-hour light/dark cue across a wide variety of organisms. Here we first show that before embryonic circadian rhythms occur, the oscillation (nucleocytoplasmic shuttling) of core circadian gene Clock is tissue-specific and correlated with the state of differentiation during both early development and later pancreas organogenesis. Disruption of Clock as well as Timeless in the embryonic pancreas does not block pancreatic differentiation but alters the balance and maturity of endocrine and exocrine cells. Molecular analysis indicates that inhibition of Clock or Timeless expression disturbs not only cell cycle regulators, but also Wnt- and Notch-signaling components, whose oscillations establish the timing mechanism in somitogenesis. Thus, our results provide new insights about circadian genes' function in control of the timing of differentiation during embryonic development.

  11. Synthesizing genetic sequential logic circuit with clock pulse generator

    National Research Council Canada - National Science Library

    Chuang, Chia-Hua; Lin, Chun-Liang

    2014-01-01

    .... This paper presents a genetic sequential logic circuit with a clock pulse generator based on a synthesized genetic oscillator, which generates a consecutive clock signal whose frequency is an inverse...

  12. Hanle Detection for Optical Clocks

    Directory of Open Access Journals (Sweden)

    Xiaogang Zhang

    2015-01-01

    Full Text Available Considering the strong inhomogeneous spatial polarization and intensity distribution of spontaneous decay fluorescence due to the Hanle effect, we propose and demonstrate a universe Hanle detection configuration of electron-shelving method for optical clocks. Experimental results from Ca atomic beam optical frequency standard with electron-shelving method show that a designed Hanle detection geometry with optimized magnetic field direction, detection laser beam propagation and polarization direction, and detector position can improve the fluorescence collection rate by more than one order of magnitude comparing with that of inefficient geometry. With the fixed 423 nm fluorescence, the improved 657 nm optical frequency standard signal intensity is presented. The potential application of the Hanle detection geometry designed for facilitating the fluorescence collection for optical lattice clock with a limited solid angle of the fluorescence collection has been discussed. The Hanle detection geometry is also effective for ion detection in ion optical clock and quantum information experiments. Besides, a cylinder fluorescence collection structure is designed to increase the solid angle of the fluorescence collection in Ca atomic beam optical frequency standard.

  13. A practical clock synchronization algorithm for UWB positioning systems

    NARCIS (Netherlands)

    Xie, Y.; Janssen, G.J.M.; van der Veen, A.J.; Dong, Min; Zheng, Thomas Fang

    2016-01-01

    A clock synchronization scheme is crucial for obtaining accuracy in time-based positioning systems. Existing clock synchronization schemes are mostly based on a simplified linear clock model, which unfortunately have a poor long-term synchronization accuracy. Assuming a two-way time transfer

  14. Modeling and optimizing of the random atomic spin gyroscope drift based on the atomic spin gyroscope.

    Science.gov (United States)

    Quan, Wei; Lv, Lin; Liu, Baiqi

    2014-11-01

    In order to improve the atom spin gyroscope's operational accuracy and compensate the random error caused by the nonlinear and weak-stability characteristic of the random atomic spin gyroscope (ASG) drift, the hybrid random drift error model based on autoregressive (AR) and genetic programming (GP) + genetic algorithm (GA) technique is established. The time series of random ASG drift is taken as the study object. The time series of random ASG drift is acquired by analyzing and preprocessing the measured data of ASG. The linear section model is established based on AR technique. After that, the nonlinear section model is built based on GP technique and GA is used to optimize the coefficients of the mathematic expression acquired by GP in order to obtain a more accurate model. The simulation result indicates that this hybrid model can effectively reflect the characteristics of the ASG's random drift. The square error of the ASG's random drift is reduced by 92.40%. Comparing with the AR technique and the GP + GA technique, the random drift is reduced by 9.34% and 5.06%, respectively. The hybrid modeling method can effectively compensate the ASG's random drift and improve the stability of the system.

  15. Modeling and optimizing of the random atomic spin gyroscope drift based on the atomic spin gyroscope

    Energy Technology Data Exchange (ETDEWEB)

    Quan, Wei; Lv, Lin, E-mail: lvlinlch1990@163.com; Liu, Baiqi [School of Instrument Science and Opto-Electronics Engineering, Beihang University, Beijing 100191 (China)

    2014-11-15

    In order to improve the atom spin gyroscope's operational accuracy and compensate the random error caused by the nonlinear and weak-stability characteristic of the random atomic spin gyroscope (ASG) drift, the hybrid random drift error model based on autoregressive (AR) and genetic programming (GP) + genetic algorithm (GA) technique is established. The time series of random ASG drift is taken as the study object. The time series of random ASG drift is acquired by analyzing and preprocessing the measured data of ASG. The linear section model is established based on AR technique. After that, the nonlinear section model is built based on GP technique and GA is used to optimize the coefficients of the mathematic expression acquired by GP in order to obtain a more accurate model. The simulation result indicates that this hybrid model can effectively reflect the characteristics of the ASG's random drift. The square error of the ASG's random drift is reduced by 92.40%. Comparing with the AR technique and the GP + GA technique, the random drift is reduced by 9.34% and 5.06%, respectively. The hybrid modeling method can effectively compensate the ASG's random drift and improve the stability of the system.

  16. Coherent Population Trapping and Optical Ramsey Interference for Compact Rubidium Clock Development

    Science.gov (United States)

    Warren, Zachary Aron

    Coherent population trapping (CPT) and optical Ramsey interference provide new avenues for developing compact, high-performance atomic clocks. In this work, I have studied the fundamental aspects of CPT and optical Ramsey interference for Raman clock development. This thesis research is composed of two parts: theoretical and experimental studies. The theoretical component of the research was initially based on pre-existing atomic models of a three-level ?-type system in which the phenomena of CPT and Ramsey interference are formed. This model served as a starting point for studying basic characteristics of CPT and Ramsey interference such as power dependence of CPT, effects of average detuning, and ground-state decoherence on linewidth, which directly impact the performance of the Raman clock. The basic three-level model was also used to model pulsed CPT excitation and measure light shift in Ramsey interference which imposes a fundamental limit on the long-term frequency stability of the Raman clock. The theoretical calculations illustrate reduction (or suppression) of light shift in Ramsey interference as an important advantage over CPT for Raman clock development. To make the model more accurate than an ideal three-level system, I developed a comprehensive atomic model using density-matrix equations including all sixteen Zeeman sublevels in the D1 manifold of 87Rb atoms in a vapor medium. The multi-level atomic model has been used for investigating characteristics of CPT and Ramsey interference under different optical excitation schemes pertaining to the polarization states of the frequency-modulated CPT beam in a Raman clock. It is also used to study the effects of axial and traverse magnetic fields on the contrast of CPT and Ramsey interference. More importantly, the multi-level atomic model is also used to accurately calculate light shift in Ramsey interference in the D1 manifold of 87Rb atoms by taking into account all possible off-resonant excitations and

  17. Circadian clocks, epigenetics, and cancer

    KAUST Repository

    Masri, Selma

    2015-01-01

    The interplay between circadian rhythm and cancer has been suggested for more than a decade based on the observations that shift work and cancer incidence are linked. Accumulating evidence implicates the circadian clock in cancer survival and proliferation pathways. At the molecular level, multiple control mechanisms have been proposed to link circadian transcription and cell-cycle control to tumorigenesis.The circadian gating of the cell cycle and subsequent control of cell proliferation is an area of active investigation. Moreover, the circadian clock is a transcriptional system that is intricately regulated at the epigenetic level. Interestingly, the epigenetic landscape at the level of histone modifications, DNA methylation, and small regulatory RNAs are differentially controlled in cancer cells. This concept raises the possibility that epigenetic control is a common thread linking the clock with cancer, though little scientific evidence is known to date.This review focuses on the link between circadian clock and cancer, and speculates on the possible connections at the epigenetic level that could further link the circadian clock to tumor initiation or progression.

  18. [Measurement of atomic number of alkali vapor and pressure of buffer gas based on atomic absorption].

    Science.gov (United States)

    Zheng, Hui-jie; Quan, Wei; Liu, Xiang; Chen, Yao; Lu, Ji-xi

    2015-02-01

    High sensitivitymagnetic measurementscanbe achieved by utilizing atomic spinmanipulation in the spin-exchange-relaxation-free (SERF) regime, which uses an alkali cell as a sensing element. The atomic number density of the alkali vapor and the pressure of the buffer gasare among the most important parameters of the cell andrequire accurate measurement. A method has been proposed and developedto measure the atomic number density and the pressure based on absorption spectroscopy, by sweeping the absorption line and fittingthe experiment data with a Lorentzian profile to obtainboth parameters. Due to Doppler broadening and pressure broadening, which is mainly dominated by the temperature of the cell and the pressure of buffer gas respectively, this work demonstrates a simulation of the errorbetween the peaks of the Lorentzian profile and the Voigt profile caused by bothfactors. The results indicates that the Doppler broadening contribution is insignificant with an error less than 0.015% at 313-513 K for a 4He density of 2 amg, and an error of 0.1% in the presence of 0.6-5 amg at 393 K. We conclude that the Doppler broadening could be ignored under above conditions, and that the Lorentzianprofile is suitably applied to fit the absorption spectrumobtainingboth parameters simultaneously. In addition we discuss the resolution and the instability due to thelight source, wavelength and the temperature of the cell. We find that the cell temperature, whose uncertainty is two orders of magnitude larger than the instability of the light source and the wavelength, is one of the main factors which contributes to the error.

  19. Optical atomic phase reference and timing

    Science.gov (United States)

    Hollberg, L.; Cornell, E. H.; Abdelrahmann, A.

    2017-06-01

    Atomic clocks based on laser-cooled atoms have made tremendous advances in both accuracy and stability. However, advanced clocks have not found their way into widespread use because there has been little need for such high performance in real-world/commercial applications. The drive in the commercial world favours smaller, lower-power, more robust compact atomic clocks that function well in real-world non-laboratory environments. Although the high-performance atomic frequency references are useful to test Einstein's special relativity more precisely, there are not compelling scientific arguments to expect a breakdown in special relativity. On the other hand, the dynamics of gravity, evidenced by the recent spectacular results in experimental detection of gravity waves by the LIGO Scientific Collaboration, shows dramatically that there is new physics to be seen and understood in space-time science. Those systems require strain measurements at less than or equal to 10-20. As we discuss here, cold atom optical frequency references are still many orders of magnitude away from the frequency stability that should be achievable with narrow-linewidth quantum transitions and large numbers of very cold atoms, and they may be able to achieve levels of phase stability, ΔΦ/Φtotal ≤ 10-20, that could make an important impact in gravity wave science. This article is part of the themed issue 'Quantum technology for the 21st century'.

  20. Ultracold atoms for precision measurement of fundamental physical quantities

    CERN Multimedia

    CERN. Geneva

    2003-01-01

    Cooling and trapping of neutral atoms has been one of the most active fields of research in physics in recent years. Several methods were demonstrated to reach temperatures as low as a few nanokelvin allowing, for example, the investigation of quantum degenerate gases. The ability to control the quantum degrees of freedom of atoms opens the way to applications for precision measurement of fundamental physical quantities. Experiments in progress, planned or being considered using new quantum devices based on ultracold atoms, namely atom interferometers and atomic clocks, will be discussed.

  1. Superradiance on the millihertz linewidth strontium clock transition

    Science.gov (United States)

    Norcia, Matthew A.; Winchester, Matthew N.; Cline, Julia R. K.; Thompson, James K.

    2016-01-01

    Laser frequency noise contributes a significant limitation to today’s best atomic clocks. A proposed solution to this problem is to create a superradiant laser using an optical clock transition as its gain medium. This laser would act as an active atomic clock and would be highly immune to the fluctuations in reference cavity length that limit today’s best lasers. We demonstrate and characterize superradiant emission from the millihertz linewidth clock transition in an ensemble of laser-cooled 87Sr atoms trapped within a high-finesse optical cavity. We measure a collective enhancement of the emission rate into the cavity mode by a factor of more than 10,000 compared to independently radiating atoms. We also demonstrate a method for seeding superradiant emission and observe interference between two independent transitions lasing simultaneously. We use this interference to characterize the relative spectral properties of the two lasing subensembles. PMID:27757423

  2. Simulations of Ground and Space-Based Oxygen Atom Experiments

    Science.gov (United States)

    Minton, T. K.; Cline, J. A.; Braunstein, M.

    2002-01-01

    Fast, pulsed atomic oxygen sources are a key tool in ground-based investigations of spacecraft contamination and surface erosion effects. These technically challenging ground-based studies provide a before and after picture of materials under low-earth-orbit (LEO) conditions. It would be of great interest to track in real time the pulsed flux from the source to the surface sample target and beyond in order to characterize the population of atoms and molecules that actually impact the surface and those that make it downstream to any coincident detectors. We have performed simulations in order to provide such detailed descriptions of these ground-based measurements and to provide an assessment of their correspondence to the actual LEO environment. Where possible we also make comparisons to measured fluxes and erosion yields. To perform the calculations we use a detailed description of a measurement beam and surface geometry based on the W, pulsed apparatus at Montana State University. In this system, a short pulse (on the order of 10 microseconds) of an O/O2 beam impacts a flat sample about 40 cm downstream and slightly displaced &om the beam s central axis. Past this target, at the end of the beam axis is a quadrupole mass spectrometer that measures the relative in situ flux of 0102 to give an overall normalized erosion yield. In our simulations we use the Direct Simulation Monte Carlo (DSMC) method, and track individual atoms within the atomic oxygen pulse. DSMC techniques are typically used to model rarefied (few collision) gas-flows which occur at altitudes above approximately 110 kilometers. These techniques are well suited for the conditions here, and multi-collision effects that can only be treated by this or a similar technique are included. This simulation includes collisions with the surface and among gas atoms that have scattered from the surface. The simulation also includes descriptions of the velocity spread and spatial profiles of the O/O2 beam

  3. Very-Narrow-Line Semiconductor Laser and Optical Clocks Based on Spectral Hole Burning Frequency Standards

    National Research Council Canada - National Science Library

    Cone, Rufus

    2000-01-01

    .... The achieved frequency stabilization provides ideal lasers for high-resolution spectroscopy, real time optical signal processing based on spectral holography, and other applications requiring ultra...

  4. The Effects of the Clock and Kickoff Rule Changes on Actual and Market-Based Expected Scoring in NCAA Football

    Directory of Open Access Journals (Sweden)

    Kenneth Linna

    2014-04-01

    Full Text Available Clock rule changes were introduced in the 2006 season with the goal of reducing the average duration of the game; these changes were reversed in 2007. In addition, in 2007 the kickoff rule was changed to create more excitement and potentially more scoring. We examine what happened to actual and expected scoring during these National Collegiate Athletic Association (NCAA football seasons. The clock rule change in 2006 led to lower scoring which was not fully encompassed in the betting market, leading to significant returns to betting the under. Multiple rule changes in 2007 led to volatility in the betting market that subsided by season’s end.

  5. Multi-channel Dual Clocks three-dimensional probability Random Multiple Access protocol for Wireless Public Bus Networks based on RTS/CTS mechanism

    Directory of Open Access Journals (Sweden)

    Zhou Sheng Jie

    2016-01-01

    Full Text Available A MAC protocol for public bus networks, called Bus MAC protocol, designed to provide high quality Internet service for bus passengers. The paper proposed a multi-channel dual clocks three-demission probability random multiple access protocol based on RTS/CTS mechanism, decreasing collisions caused by multiple access from multiple passengers. Use the RTS/CTS mechanism increases the reliability and stability of the system, reducing the collision possibility of the information packets to a certain extent, improves the channel utilization; use the multi-channel mechanism, not only enables the channel load balancing, but also solves the problem of the hidden terminal and exposed terminal. Use the dual clocks mechanism, reducing the system idle time. At last, the different selection of the three-dimensional probabilities can make the system throughput adapt to the network load which could realize the maximum of the system throughput.

  6. The ozone-iodine-chlorate clock reaction.

    Directory of Open Access Journals (Sweden)

    Rafaela T P Sant'Anna

    Full Text Available This work presents a new clock reaction based on ozone, iodine, and chlorate that differs from the known chlorate-iodine clock reaction because it does not require UV light. The induction period for this new clock reaction depends inversely on the initial concentrations of ozone, chlorate, and perchloric acid but is independent of the initial iodine concentration. The proposed mechanism considers the reaction of ozone and iodide to form HOI, which is a key species for producing non-linear autocatalytic behavior. The novelty of this system lies in the presence of ozone, whose participation has never been observed in complex systems such as clock or oscillating reactions. Thus, the autocatalysis demonstrated in this new clock reaction should open the possibility for a new family of oscillating reactions.

  7. GPS Composite Clock Analysis

    OpenAIRE

    Wright, James R.

    2008-01-01

    The GPS composite clock defines GPS time, the timescale used today in GPS operations. GPS time is illuminated by examination of its role in the complete estimation and control problem relative to UTC/TAI. The phase of each GPS clock is unobservable from GPS pseudorange measurements, and the mean phase of the GPS clock ensemble (GPS time) is unobservable. A new and useful observability definition is presented, together with new observability theorems, to demonstrate explicitly that GPS time is...

  8. Evolutionary scenarios for the origin of an Antarctic tardigrade species based on molecular clock analyses and biogeographic data

    NARCIS (Netherlands)

    Guidetti, R.; McInnes, S.J.; Cesari, M.; Rebecchi, L.; Rota-Stabelli, O.

    2017-01-01

    The origin of the Antarctic continental extant fauna is a highly debated topic, complicated by the paucity of organisms for which we have clear biogeographic distributions and understanding of their evolutionary timescale. To shed new light on this topic, we coupled molecular clock analyses with

  9. Clock Synchronization in Wireless Sensor Networks: A New Model and Analysis Approach Based on Networked Control Perspective

    Directory of Open Access Journals (Sweden)

    Wang Ting

    2014-01-01

    Full Text Available Motivated by the importance of the clock synchronization in wireless sensor networks (WSNs, this paper proposes a new research approach and model approach, which quantitatively analyzes clock synchronization from the perspective of modern control theory. Two kinds of control strategies are used as examples to analyze the effect of the control strategy on clock synchronization from different perspectives, namely, the single-step optimal control and the LQG global optimal control. The proposed method establishes a state space model for clock relationship, thus making dimension extension and parameter identification easier, and is robust to changes under the condition of node failures and new nodes. And through the design of different control strategies and performance index functions, the method can satisfy various requirements of the synchronization precision, convergence speed, energy consumption and the computational complexity, and so on. Finally, the simulations show that the synchronization accuracy of the proposed method is higher than that of the existing protocol, and the former convergence speed of the synchronization error is faster.

  10. A Fermi-degenerate three-dimensional optical lattice clock

    Science.gov (United States)

    Campbell, S. L.; Hutson, R. B.; Marti, G. E.; Goban, A.; Darkwah Oppong, N.; McNally, R. L.; Sonderhouse, L.; Robinson, J. M.; Zhang, W.; Bloom, B. J.; Ye, J.

    2017-10-01

    Strontium optical lattice clocks have the potential to simultaneously interrogate millions of atoms with a high spectroscopic quality factor of 4 × 1017. Previously, atomic interactions have forced a compromise between clock stability, which benefits from a large number of atoms, and accuracy, which suffers from density-dependent frequency shifts. Here we demonstrate a scalable solution that takes advantage of the high, correlated density of a degenerate Fermi gas in a three-dimensional (3D) optical lattice to guard against on-site interaction shifts. We show that contact interactions are resolved so that their contribution to clock shifts is orders of magnitude lower than in previous experiments. A synchronous clock comparison between two regions of the 3D lattice yields a measurement precision of 5 × 10-19 in 1 hour of averaging time.

  11. Clocked combustor can array

    Energy Technology Data Exchange (ETDEWEB)

    Kim, Won-Wook; McMahan, Kevin Weston; Srinivasan, Shiva Kumar

    2017-01-17

    The present application provides a clocked combustor can array for coherence reduction in a gas turbine engine. The clocked combustor can array may include a number of combustor cans positioned in a circumferential array. A first set of the combustor cans may have a first orientation and a second set of the combustor cans may have a second orientation.

  12. Biological Clocks & Circadian Rhythms

    Science.gov (United States)

    Robertson, Laura; Jones, M. Gail

    2009-01-01

    The study of biological clocks and circadian rhythms is an excellent way to address the inquiry strand in the National Science Education Standards (NSES) (NRC 1996). Students can study these everyday phenomena by designing experiments, gathering and analyzing data, and generating new experiments. As students explore biological clocks and circadian…

  13. Optical Clocks in Space

    NARCIS (Netherlands)

    Schiller, S.; Görlitz, A.; Nevsky, A.; Koelemeij, J. C J; Wicht, A.; Gill, K.P.; Klein, H. A.; Margolis, H. S.; Mileti, G.; Sterr, U.; Riehle, F.; Peik, E.; Tamm, Chr; Ertmer, W.; Rasel, E.; van der Klein, M; Salomon, C.; Tino, G. M.; Lemonde, P.; Holzwarth, R.; Hänsch, T. W.

    The performance of optical clocks has strongly progressed in recent years, and accuracies and instabilities of 1 part in 1018 are expected in the near future. The operation of optical clocks in space provides new scientific and technological opportunities. In particular, an earth-orbiting satellite

  14. PARP Around the Clock

    OpenAIRE

    Kumar, Vivek; Takahashi, Joseph S.

    2010-01-01

    Cells possess internal ~24-hour or circadian clocks that synchronize physiological processes with daily cycles of light and nutrient availability. In this issue, Asher et al. (2010) find that PARP-1 (Poly(ADP-ribose) polymerase-1) modifies components of the clock machinery in response to feeding, providing a mechanism for how metabolic rhythms coordinate with circadian rhythms.

  15. Egyptian "Star Clocks"

    Science.gov (United States)

    Symons, Sarah

    Diagonal, transit, and Ramesside star clocks are tables of astronomical information occasionally found in ancient Egyptian temples, tombs, and papyri. The tables represent the motions of selected stars (decans and hour stars) throughout the Egyptian civil year. Analysis of star clocks leads to greater understanding of ancient Egyptian constellations, ritual astronomical activities, observational practices, and pharaonic chronology.

  16. Helium Pressure Shift of the Hyperfine Clock Transition in Hg-201(+)

    Science.gov (United States)

    Larigani, S. Taghavi; Burt, E. A.; Tjoelker, R. L.

    2010-01-01

    There are two stable odd isotopes of mercury with singly ionized hyperfine structure suitable for a microwave atomic clock: Hg-199(+) and Hg-201(+). We are investigating the viability of a trapped ion clock based on Hg-201(+) in a configuration that uses a buffer gas to increase ion loading efficiency and counter ion heating from rf trapping fields. Traditionally, either helium or neon is used as the buffer gas at approx. 10(exp -5) torr to confine mercury ions near room temperature. In addition to the buffer gas, other residual background gasses such as H2O, N2, O2, CO, CO2, and CH2 may be present in trace quantities. Collisions between trapped ions and buffer gas or background gas atoms/molecules produce a momentary shift of the ion clock transition frequency and constitute one of the largest systematic effects in this type of clock. Here we report an initial measurement of the He pressure shift in Hg-201(+) and compare this to Hg-199(+).

  17. Circadian clocks: Not your grandfather's clock.

    Science.gov (United States)

    Turek, Fred W

    2016-11-25

    The last 20 years have seen the rapid evolution of our understanding of the molecular genes and networks that enable almost all forms of life to generate 24-hour-or circadian-rhythms. One finding has been particularly exciting: that the molecular circadian clock resides in almost all of the cells of the body and that the clock regulates the timing of many cellular and signaling pathways associated with multiple disease states. Such advances represent a new frontier for medicine: circadian medicine. Copyright © 2016, American Association for the Advancement of Science.

  18. Determination of the thermal radiation effect on an optical strontium lattice clock; Bestimmung des Einflusses thermischer Strahlung auf eine optische Strontium-Gitteruhr

    Energy Technology Data Exchange (ETDEWEB)

    Middelmann, Thomas

    2013-05-31

    Optical clocks have the potential to be 100 times more accurate than current best cesium atomic clocks within a fraction of the averaging time. This corresponds to a fractional uncertainty of the clock frequency on the level of 10{sup -18} and requires highaccuracy knowledge of systematic frequency shifts, such that they can be avoided or corrected for. In strontium optical lattice clocks an ensemble of ultracold strontium atoms is confined in an optical lattice, to allow for spectroscopy of the reference transition 5s{sup 2} {sup 1}S{sub 0}-5s5p {sup 3}P{sub 0} in the Lamb-Dicke regime. The by far largest systematic frequency shift of the strontium clock transition is caused by its high sensitivity to blackbody radiation (BBR). The knowledge of the resulting frequency shift limited the achievable clock uncertainty to about 1 x 10{sup -16}. In this thesis for the first time an experimental approach was followed, to determine the sensitivity of the strontium clock transition to blackbody radiation. At an environmental temperature of 300 K the resulting frequency shift corresponds to 2.277 8(23) Hz. The achieved uncertainty contributes with 5 x 10{sup -18} to the fractional systematic uncertainty of the clock frequency. The determination is based on a precision measurement of the difference of static polarizabilities of the two clock states {Delta}{alpha}{sub dc} = {alpha}(5s5p {sup 3}P{sub 0})-{alpha}(5s{sup 2} {sup 1}S{sub 0}) = 4.078 73(11) x 10{sup -39} Cm{sup 2} /V. For this the de Stark shift of the clock transition has been measured in the accurately known electric field of a precision plate capacitor, which has been developed in this work. The attained static polarizability difference {Delta}{alpha}{sub dc} corresponds to the first term of a power series of the sensitivity to BBR. Higher orders are accumulated as dynamic part of the BBR shift. Which has been modelled using {Delta}{alpha}{sub dc} and experimental data for other atomic properties. To

  19. Prototype of the DLR Operational Composite Clock: Methods and Test Cases

    Science.gov (United States)

    2009-11-01

    Study of Time Scale Algorithms,” Metrologia , 28, 57-63. [2] R. Jones and P. Tryon, 1983, “Estimating Time From Atomic Clocks,” Journal of Research of...L. Galleani and P. Tavella, 2008, “Detection and identification of atomic clock anomalies,” Metrologia , 45, 127-133. [16] C. Zucca and P

  20. Molecular Architecture of the Mammalian Circadian Clock

    Science.gov (United States)

    Partch, Carrie L.; Green, Carla B.; Takahashi, Joseph S.

    2013-01-01

    Circadian clocks coordinate physiology and behavior with the 24-hour solar day to provide temporal homeostasis with the external environment. The molecular clocks that drive these intrinsic rhythmic changes are based on interlocked transcription/translation feedback loops that integrate with diverse environmental and metabolic stimuli to generate internal 24-hour timing. In this review we highlight recent advances in our understanding of the core molecular clock and how it utilizes diverse transcriptional and post-transcriptional mechanisms to impart temporal control onto mammalian physiology. Understanding the way in which biological rhythms are generated throughout the body may provide avenues for temporally-directed therapeutics to improve health and prevent disease. PMID:23916625

  1. An all-atom structure-based potential for proteins: bridging minimal models with all-atom empirical forcefields.

    Science.gov (United States)

    Whitford, Paul C; Noel, Jeffrey K; Gosavi, Shachi; Schug, Alexander; Sanbonmatsu, Kevin Y; Onuchic, José N

    2009-05-01

    Protein dynamics take place on many time and length scales. Coarse-grained structure-based (Go) models utilize the funneled energy landscape theory of protein folding to provide an understanding of both long time and long length scale dynamics. All-atom empirical forcefields with explicit solvent can elucidate our understanding of short time dynamics with high energetic and structural resolution. Thus, structure-based models with atomic details included can be used to bridge our understanding between these two approaches. We report on the robustness of folding mechanisms in one such all-atom model. Results for the B domain of Protein A, the SH3 domain of C-Src Kinase, and Chymotrypsin Inhibitor 2 are reported. The interplay between side chain packing and backbone folding is explored. We also compare this model to a C(alpha) structure-based model and an all-atom empirical forcefield. Key findings include: (1) backbone collapse is accompanied by partial side chain packing in a cooperative transition and residual side chain packing occurs gradually with decreasing temperature, (2) folding mechanisms are robust to variations of the energetic parameters, (3) protein folding free-energy barriers can be manipulated through parametric modifications, (4) the global folding mechanisms in a C(alpha) model and the all-atom model agree, although differences can be attributed to energetic heterogeneity in the all-atom model, and (5) proline residues have significant effects on folding mechanisms, independent of isomerization effects. Because this structure-based model has atomic resolution, this work lays the foundation for future studies to probe the contributions of specific energetic factors on protein folding and function.

  2. Regulation of behavioral circadian rhythms and clock protein PER1 by the deubiquitinating enzyme USP2

    DEFF Research Database (Denmark)

    Yang, Yaoming; Duguay, David; Bédard, Nathalie

    2012-01-01

    Endogenous 24-hour rhythms are generated by circadian clocks located in most tissues. The molecular clock mechanism is based on feedback loops involving clock genes and their protein products. Post-translational modifications, including ubiquitination, are important for regulating the clock...... of the circadian clock, both at the level of the core pacemaker and its response to external cues....... feedback mechanism. Previous work has focused on the role of ubiquitin ligases in the clock mechanism. Here we show a role for the rhythmically-expressed deubiquitinating enzyme ubiquitin specific peptidase 2 (USP2) in clock function. Mice with a deletion of the Usp2 gene (Usp2 KO) display a longer free...

  3. Machine Learning Based Localization and Classification with Atomic Magnetometers

    Science.gov (United States)

    Deans, Cameron; Griffin, Lewis D.; Marmugi, Luca; Renzoni, Ferruccio

    2018-01-01

    We demonstrate identification of position, material, orientation, and shape of objects imaged by a Rb 85 atomic magnetometer performing electromagnetic induction imaging supported by machine learning. Machine learning maximizes the information extracted from the images created by the magnetometer, demonstrating the use of hidden data. Localization 2.6 times better than the spatial resolution of the imaging system and successful classification up to 97% are obtained. This circumvents the need of solving the inverse problem and demonstrates the extension of machine learning to diffusive systems, such as low-frequency electrodynamics in media. Automated collection of task-relevant information from quantum-based electromagnetic imaging will have a relevant impact from biomedicine to security.

  4. VALD-2: Progress of the Vienna Atomic Line Data Base

    Science.gov (United States)

    Kupka, F.; Piskunov, N.; Ryabchikova, T. A.; Stempels, H. C.; Weiss, W. W.

    1999-07-01

    We describe the updated version of the Vienna Atomic Line Data Base (VALD, \\cite[Piskunov et al. 1995)]{pis95} which represents a considerable improvement over the first installation from 1994. The original line lists have been complemented with critically evaluated data obtained from experimental measurements and theoretical calculations which are necessary for computing state-of-the-art line opacities in stellar atmospheres, as well as for synthesizing spectra for high precision analyses. In this paper, we present new and improved data sets for neutral species and ions of Si, P, Sc, Ti, V, Cr, Mn, Fe, Co, Ni, Cu, Zn, Y, Zr, Ru, Xe, La, Ce, Pr, Nd, Sm, Eu, Gd, Dy, Ho, Er, Tm, Yb, Lu, Re, Pt, Au, Hg, and Pb. For some species data are available in VALD for the first time. We explain our choice of quality rankings by reviewing the literature for the new data and by comparison with source lists included into VALD. For some cases, we produced new line data by weighted averaging of data from different sources with individual error estimates in order to increase the reliability of VALD line lists. Software modifications allow remote users of VALD to specify individual extraction parameters as an alternative to the default settings of the VALD team and to have direct control over the quality ranking of line data. A World-Wide-Web interface is described which provides easy access to all new features. To simplify proper crediting of all authors of atomic data, VALD now includes a compilation of all publications used in each type of reply. Finally, we briefly discuss the future roadmap of VALD developments, including the incorporation of molecular transitions and integration with external data bases. http://www.astro.univie.ac.at/~vald http://www.astro.uu.se/~vald

  5. Reduced Kalman Filters for Clock Ensembles

    Science.gov (United States)

    Greenhall, Charles A.

    2011-01-01

    This paper summarizes the author's work ontimescales based on Kalman filters that act upon the clock comparisons. The natural Kalman timescale algorithm tends to optimize long-term timescale stability at the expense of short-term stability. By subjecting each post-measurement error covariance matrix to a non-transparent reduction operation, one obtains corrected clocks with improved short-term stability and little sacrifice of long-term stability.

  6. Photoperiodic plasticity in circadian clock neurons in insects

    Directory of Open Access Journals (Sweden)

    Sakiko eShiga

    2013-08-01

    Full Text Available Since Bünning’s observation of circadian rhythms and photoperiodism in the runner bean Phaseolus multiflorus in 1936, many studies have shown that photoperiodism is based on the circadian clock system. In insects, involvement of circadian clock genes or neurons has been recently shown in the photoperiodic control of developmental arrests, diapause. Based on molecular and neuronal studies in Drosophila melanogaster, photoperiodic changes have been reported for expression patterns of the circadian clock genes, subcellular distribution of clock proteins, fiber distribution, or the number of plausible clock neurons in different species. Photoperiod sets peaks of per or tim mRNA abundance at lights-off in Sarcophaga crassipalpis, Chymomyza costata and Protophormia terraenovae. Abundance of per and Clock mRNA changes by photoperiod in Pyrrhocoris apterus. Subcellular Per distribution in circadian clock neurons changes with photoperiod in P. terraenovae. Although photoperiodism is not known in Leucophaea maderae, under longer day length, more stomata and longer commissural fibers of circadian clock neurons have been found. These plastic changes in the circadian clock neurons could be an important constituent for photoperiodic clock mechanisms to integrate repetitive photoperiodic information and produce different outputs based on day length.

  7. Spin Resonance Clock Transition of the Endohedral Fullerene 15N @ C60

    Science.gov (United States)

    Harding, R. T.; Zhou, S.; Zhou, J.; Lindvall, T.; Myers, W. K.; Ardavan, A.; Briggs, G. A. D.; Porfyrakis, K.; Laird, E. A.

    2017-10-01

    The endohedral fullerene 15N @ C60 has narrow electron paramagnetic resonance lines which have been proposed as the basis for a condensed-matter portable atomic clock. We measure the low-frequency spectrum of this molecule, identifying and characterizing a clock transition at which the frequency becomes insensitive to magnetic field. We infer a linewidth at the clock field of 100 kHz. Using experimental data, we are able to place a bound on the clock's projected frequency stability. We discuss ways to improve the frequency stability to be competitive with existing miniature clocks.

  8. Raman transitions between hyperfine clock states in a magnetic trap

    CERN Document Server

    Naber, J B; Hubert, T; Spreeuw, R J C

    2016-01-01

    We present our experimental investigation of an optical Raman transition between the magnetic clock states of $^{87}$Rb in an atom chip magnetic trap. The transfer of atomic population is induced by a pair of diode lasers which couple the two clock states off-resonantly to an intermediate state manifold. This transition is subject to destructive interference of two excitation paths, which leads to a reduction of the effective two-photon Rabi-frequency. Furthermore, we find that the transition frequency is highly sensitive to the intensity ratio of the diode lasers. Our results are well described in terms of light shifts in the multi-level structure of $^{87}$Rb. The differential light shifts vanish at an optimal intensity ratio, which we observe as a narrowing of the transition linewidth. We also observe the temporal dynamics of the population transfer and find good agreement with a model based on the system's master equation and a Gaussian laser beam profile. Finally, we identify several sources of decoheren...

  9. Atomic force microscopy-based characterization and design of biointerfaces

    Science.gov (United States)

    Alsteens, David; Gaub, Hermann E.; Newton, Richard; Pfreundschuh, Moritz; Gerber, Christoph; Müller, Daniel J.

    2017-03-01

    Atomic force microscopy (AFM)-based methods have matured into a powerful nanoscopic platform, enabling the characterization of a wide range of biological and synthetic biointerfaces ranging from tissues, cells, membranes, proteins, nucleic acids and functional materials. Although the unprecedented signal-to-noise ratio of AFM enables the imaging of biological interfaces from the cellular to the molecular scale, AFM-based force spectroscopy allows their mechanical, chemical, conductive or electrostatic, and biological properties to be probed. The combination of AFM-based imaging and spectroscopy structurally maps these properties and allows their 3D manipulation with molecular precision. In this Review, we survey basic and advanced AFM-related approaches and evaluate their unique advantages and limitations in imaging, sensing, parameterizing and designing biointerfaces. It is anticipated that in the next decade these AFM-related techniques will have a profound influence on the way researchers view, characterize and construct biointerfaces, thereby helping to solve and address fundamental challenges that cannot be addressed with other techniques.

  10. Programmable Clock Waveform Generation for CCD Readout

    Energy Technology Data Exchange (ETDEWEB)

    Vicente, J. de; Castilla, J.; Martinez, G.; Marin, J.

    2006-07-01

    Charge transfer efficiency in CCDs is closely related to the clock waveform. In this paper, an experimental framework to explore different FPGA based clock waveform generator designs is described. Two alternative design approaches for controlling the rise/fall edge times and pulse width of the CCD clock signal have been implemented: level-control and time-control. Both approaches provide similar characteristics regarding the edge linearity and noise. Nevertheless, dissimilarities have been found with respect to the area and frequency range of application. Thus, while the time-control approach consumes less area, the level control approach provides a wider range of clock frequencies since it does not suffer capacitor discharge effect. (Author) 8 refs.

  11. Avian Circadian Organization: A Chorus of Clocks

    Science.gov (United States)

    Cassone, Vincent M

    2013-01-01

    In birds, biological clock function pervades all aspects of biology, controlling daily changes in sleep: wake, visual function, song, migratory patterns and orientation, as well as seasonal patterns of reproduction, song and migration. The molecular bases for circadian clocks are highly conserved, and it is likely the avian molecular mechanisms are similar to those expressed in mammals, including humans. The central pacemakers in the avian pineal gland, retinae and SCN dynamically interact to maintain stable phase relationships and then influence downstream rhythms through entrainment of peripheral oscillators in the brain controlling behavior and peripheral tissues. Birds represent an excellent model for the role played by biological clocks in human neurobiology; unlike most rodent models, they are diurnal, they exhibit cognitively complex social interactions, and their circadian clocks are more sensitive to the hormone melatonin than are those of nocturnal rodents. PMID:24157655

  12. Detection of weak frequency jumps for GNSS onboard clocks.

    Science.gov (United States)

    Huang, Xinming; Gong, Hang; Ou, Gang

    2014-05-01

    In this paper, a weak frequency jump detection method is developed for onboard clocks in global navigation satellite systems (GNSS). A Kalman filter is employed to facilitate the onboard real-time processing of atomic clock measurements, whose N-step prediction residuals are used to construct the weak frequency jump detector. Numerical simulations show that the method can successfully detect weak frequency jumps. The detection method proposed in this paper is helpful for autonomous integrity monitoring of GNSS satellite clocks, and can also be applied to other frequency anomalies with an appropriately modified detector.

  13. Simultaneous 10 Gbps data and polarization-based pulse-per-second clock transmission using a single VCSEL for high-speed optical fibre access networks

    Science.gov (United States)

    Isoe, G. M.; Wassin, S.; Gamatham, R. R. G.; Leitch, A. W. R.; Gibbon, T. B.

    2017-01-01

    Access networks based on vertical cavity surface emitting laser (VCSEL) transmitters offer alternative solution in delivering different high bandwidth, cost effective services to the customer premises. Clock and reference frequency distribution is critical for applications such as Coordinated Universal Time (UTC), GPS, banking and big data science projects. Simultaneous distribution of both data and timing signals over shared infrastructure is thus desirable. In this paper, we propose and experimentally demonstrate a novel, cost-effective technique for multi-signal modulation on a single VCSEL transmitter. Two signal types, an intensity modulated 10 Gbps data signal and a polarization-based pulse per second (PPS) clock signal are directly modulated onto a single VCSEL carrier at 1310 nm. Spectral efficiency is maximized by exploiting inherent orthogonal polarization switching of the VCSEL with changing bias in transmission of the PPS signal. A 10 Gbps VCSEL transmission with PPS over 11 km of G.652 fibre introduced a transmission penalty of 0.52 dB. The contribution of PPS to this penalty was found to be 0.08 dB.

  14. Atomic Structures of Molecules Based on Additivity of Atomic and/or Ionic Radii

    OpenAIRE

    Raji Heyrovska; Sara Narayan

    2009-01-01

    The authors have shown in recent years that interatomic and interionic distances are sums of the radii of the adjacent atoms and/or ions. Many examples will be provided and it will be shown how the experimental bond lengths agree with the radii sums. The examples include inorganic compounds like alkali halides, metal hydrides, graphene, etc., organic like aliphatic and aromatic compounds and biochemical like nucleic acids, amino acids, caffeine-related compounds and vitamins.

  15. Direct Laser Cooling Al{}^{+} Ion Optical Clocks

    Science.gov (United States)

    Zhang, Jie; Deng, Ke; Luo, Jun; Lu, Ze-Huang

    2017-05-01

    The Al {}+ ion optical clock is a very promising optical frequency standard candidate due to its extremely small black-body radiation shift. It has been successfully demonstrated with the indirect cooled, quantum-logic-based spectroscopy technique. Its accuracy is limited by second-order Doppler shift, and its stability is limited by the number of ions that can be probed in quantum logic processing. We propose a direct laser cooling scheme of Al {}+ ion optical clocks where both the stability and accuracy of the clocks are greatly improved. In the proposed scheme, two Al {}+ traps are utilized. The first trap is used to trap a large number of Al {}+ ions to improve the stability of the clock laser, while the second trap is used to trap a single Al {}+ ion to provide the ultimate accuracy. Both traps are cooled with a continuous wave 167 nm laser. The expected clock laser stability can reach 9.0× {10}-17/\\sqrt{τ }. For the second trap, in addition to 167 nm laser Doppler cooling, a second stage pulsed 234 nm two-photon cooling laser is utilized to further improve the accuracy of the clock laser. The total systematic uncertainty can be reduced to about 1× {10}-18. The proposed Al {}+ ion optical clock has the potential to become the most accurate and stable optical clock. Supported by the National Basic Research Program of China under Grant No 2012CB821300, the National Natural Science Foundation of China under Grant Nos 91336213, 11304109, 91536116 and 11174095, and the Program for New Century Excellent Talents by the Ministry of Education under Grant No NCET-11-0176.

  16. A digital clock recovery algorithm based on chromatic dispersion and polarization mode dispersion feedback dual phase detection for coherent optical transmission systems

    Science.gov (United States)

    Liu, Bo; Xin, Xiangjun; Zhang, Lijia; Wang, Fu; Zhang, Qi

    2018-02-01

    A new feedback symbol timing recovery technique using timing estimation joint equalization is proposed for digital receivers with two samples/symbol or higher sampling rate. Different from traditional methods, the clock recovery algorithm in this paper adopts another algorithm distinguishing the phases of adjacent symbols, so as to accurately estimate the timing offset based on the adjacent signals with the same phase. The addition of the module for eliminating phase modulation interference before timing estimation further reduce the variance, thus resulting in a smoothed timing estimate. The Mean Square Error (MSE) and Bit Error Rate (BER) of the resulting timing estimate are simulated to allow a satisfactory estimation performance. The obtained clock tone performance is satisfactory for MQAM modulation formats and the Roll-off Factor (ROF) close to 0. In the back-to-back system, when ROF= 0, the maximum of MSE obtained with the proposed approach reaches 0 . 0125. After 100-km fiber transmission, BER decreases to 10-3 with ROF= 0 and OSNR = 11 dB. With the increase in ROF, the performances of MSE and BER become better.

  17. Atomic force microscopy-based shape analysis of heart mitochondria.

    Science.gov (United States)

    Lee, Gi-Ja; Park, Hun-Kuk

    2015-01-01

    Atomic force microscopy (AFM) has become an important medical and biological tool for the noninvasive imaging of cells and biomaterials in medical, biological, and biophysical research. The major advantages of AFM over conventional optical and electron microscopes for bio-imaging include the facts that no special coating is required and that imaging can be done in all environments-air, vacuum, or aqueous conditions. In addition, it can also precisely determine pico-nano Newton force interactions between the probe tip and the sample surface from force-distance curve measurements.It is widely known that mitochondrial swelling is one of the most important indicators of the opening of the mitochondrial permeability transition (MPT) pore. As mitochondrial swelling is an ultrastructural change, quantitative analysis of this change requires high-resolution microscopic methods such as AFM. Here, we describe the use of AFM-based shape analysis for the characterization of nanostructural changes in heart mitochondria resulting from myocardial ischemia-reperfusion injury.

  18. Optical dipole mirror for cold atoms based on a metallic diffraction grating

    DEFF Research Database (Denmark)

    Kawalec, Tomasz; Bartoszek-Bober, Dobroslawa; Panas, Roman

    We report on the realization of a plasmonic dipole mirror for cold atoms based on a metallic grating coupler. A cloud of atoms is reflected by the repulsive potential generated by surface plasmon polaritons (SPPs) excited on a reflection gold grating by a 780 nm laser beam. Experimentally...... and numerically determined mirror efficiencies are close to 100%. The intensity of SPPs above a real grating coupler and the atomic trajectories, as well as the momentum dispersion of the atom cloud being reflected, are computed. A suggestion is given as to how the plasmonic mirror might serve as an optical atom...

  19. Optical dipole mirror for cold atoms based on a metallic diffraction grating

    DEFF Research Database (Denmark)

    Kawalec, Tomasz; Bartoszek-Bober, Dobroslawa; Panas, Roman

    2014-01-01

    We report on the realization of a plasmonic dipole mirror for cold atoms based on a metallic grating coupler. A cloud of atoms is reflected by the repulsive potential generated by surface plasmon polaritons (SPPs) excited on a reflection gold grating by a 780 nm laser beam. Experimentally...... and numerically determined mirror efficiencies are close to 100%. The intensity of SPPs above a real grating coupler and the atomic trajectories, as well as the momentum dispersion of the atom cloud being reflected, are computed. A suggestion is given as to how the plasmonic mirror might serve as an optical atom...

  20. Atom devices based on single dopants in silicon nanostructures

    National Research Council Canada - National Science Library

    Moraru, Daniel; Udhiarto, Arief; Anwar, Miftahul; Nowak, Roland; Jablonski, Ryszard; Hamid, Earfan; Tarido, Juli Cha; Mizuno, Takeshi; Tabe, Michiharu

    2011-01-01

    .... In this work, we review our most recent studies on key atom devices with fundamental structures of silicon-on-insulator MOSFETs, such as single-dopant transistors, preliminary memory devices, single...

  1. A Faster Algorithm for Solving One-Clock Priced Timed Games

    DEFF Research Database (Denmark)

    Hansen, Thomas Dueholm; Ibsen-Jensen, Rasmus; Miltersen, Peter Bro

    2012-01-01

    previously known time bound for solving one-clock priced timed games was 2^(O(n^2+m)), due to Rutkowski. For our improvement, we introduce and study a new algorithm for solving one-clock priced timed games, based on the sweep-line technique from computational geometry and the strategy iteration paradigm from...... the algorithmic theory of Markov decision processes. As a corollary, we also improve the analysis of previous algorithms due to Bouyer, Cassez, Fleury, and Larsen; and Alur, Bernadsky, and MadhusudanWe present a construction of log-depth formulae for various threshold functions based on atomic threshold gates...... of constant size. From this, we build a new family of linear secret sharing schemes that are multiplicative, scale well as the number of players increases and allows to raise a shared value to the characteristic of the underlying field without interaction. Some of these schemes are in addition strongly...

  2. Clock gene expression in the murine gastrointestinal tract: endogenous rhythmicity and effects of a feeding regimen.

    Science.gov (United States)

    Hoogerwerf, Willemijntje A; Hellmich, Helen L; Cornélissen, Germaine; Halberg, Franz; Shahinian, Vahakn B; Bostwick, Jonathon; Savidge, Tor C; Cassone, Vincent M

    2007-10-01

    Based on observations that the gastrointestinal tract is subject to various 24-hour rhythmic processes, it is conceivable that some of these rhythms are under circadian clock gene control. We hypothesized that clock genes are present in the gastrointestinal tract and that they are part of a functional molecular clock that coordinates rhythmic physiologic functions. The effects of timed feeding and vagotomy on temporal clock gene expression (clock, bmal1, per1-3, cry1-2) in the gastrointestinal tract and suprachiasmatic nucleus (bmal, per2) of C57BL/6J mice were examined using real-time polymerase chain reaction and Western blotting (BMAL, PER2). Colonic clock gene localization was examined using immunohistochemistry (BMAL, PER1-2). Clock immunoreactivity was observed in the myenteric plexus and epithelial crypt cells. Clock genes were expressed rhythmically throughout the gastrointestinal tract. Timed feeding shifted clock gene expression at the RNA and protein level but did not shift clock gene expression in the central clock. Vagotomy did not alter gastric clock gene expression compared with sham-treated controls. The murine gastrointestinal tract contains functional clock genes, which are molecular core components of the circadian clock. Daytime feeding in nocturnal rodents is a strong synchronizer of gastrointestinal clock genes. This synchronization occurs independently of the central clock. Gastric clock gene expression is not mediated through the vagal nerve. The presence of clock genes in the myenteric plexus and epithelial cells suggests a role for clock genes in circadian coordination of gastrointestinal functions such as motility, cell proliferation, and migration.

  3. The role of the mechanical clock in medieval science.

    Science.gov (United States)

    Álvarez, Víctor Pérez

    2015-03-01

    The invention and spread of the mechanical clock is a complex and multifaceted historical phenomenon. Some of these facets, such as its social impact, have been widely studied, but their scientific dimensions have often been dismissed. The mechanical clock was probably born as a scientific instrument for driving a model of the universe, and not only natural philosophers but also kings, nobles and other members of the social elites showed an interest in clocks as scientific instruments. Public clocks later spread a new way of telling time based on equal hours, laying the foundations for changes in time consciousness that would accelerate scientific thinking. Copyright © 2015 Elsevier Ltd. All rights reserved.

  4. The modern molecular clock.

    Science.gov (United States)

    Bromham, Lindell; Penny, David

    2003-03-01

    The discovery of the molecular clock--a relatively constant rate of molecular evolution--provided an insight into the mechanisms of molecular evolution, and created one of the most useful new tools in biology. The unexpected constancy of rate was explained by assuming that most changes to genes are effectively neutral. Theory predicts several sources of variation in the rate of molecular evolution. However, even an approximate clock allows time estimates of events in evolutionary history, which provides a method for testing a wide range of biological hypotheses ranging from the origins of the animal kingdom to the emergence of new viral epidemics.

  5. Ultracold Molecules in Optical Lattices: Efficient Production and Application to Molecular Clocks

    Science.gov (United States)

    2015-05-03

    Martin, M. M. Boyd, and J. Ye. Rabi spectroscopy and excitation inhomogeneity in a one-dimensional optical lattice clock. Phys. Rev. A, 80:052703, 2009...can fully control the molecules’ internal and external quantum states, as in state-of-the-art atomic lattice clocks. Using the quantized molecular...spectra in an optical lattice , we devised a new lattice thermometry method that is advantageous for many lattice experiments, including clocks and

  6. Single-atom based coherent quantum interference device structure.

    Science.gov (United States)

    Naydenov, Borislav; Rungger, Ivan; Mantega, Mauro; Sanvito, Stefano; Boland, John J

    2015-05-13

    We describe the fabrication, operation principles, and simulation of a coherent single-atom quantum interference device (QID) structure on Si(100) controlled by the properties of single atoms. The energy and spatial distribution of the wave functions associated with the device are visualized by scanning tunneling spectroscopy and the amplitude and phase of the evanescent wave functions that couple into the quantum well states are directly measured, including the action of an electrostatic gate. Density functional theory simulations were employed to simulate the electronic structure of the device structure, which is in excellent agreement with the measurements. Simulations of device transmission demonstrate that our coherent single-atom QID can have ON-OFF ratios in excess of 10(3) with potentially minimal power dissipation.

  7. Initiating Heavy-atom Based Phasing by Multi-Dimensional Molecular Replacement

    OpenAIRE

    Pedersen, Bjørn Panyella; Gourdon, Pontus; Liu, Xiangyu; Lykkegaard Karlsen, Jesper; Nissen, Poul

    2014-01-01

    To obtain an electron-density map from a macromolecular crystal the phase problem needs to be solved, which often involves the use of heavy-atom derivative crystals and concomitant heavy-atom substructure determination. This is typically performed by dual-space methods, direct methods or Patterson-based approaches, which however may fail when only poorly diffracting derivative crystals are available. This is often the case for, for example, membrane proteins. Here, an approach for heavy-atom ...

  8. Micromachined fountain pen for atomic force microscope-based nanopatterning

    NARCIS (Netherlands)

    Deladi, S.; Tas, Niels Roelof; Berenschot, Johan W.; Krijnen, Gijsbertus J.M.; de Boer, Meint J.; de Boer, J.H.; Péter, M.; Elwenspoek, Michael Curt

    2004-01-01

    We present a tool that can be used in standard atomic force microscope and that enables chemical, chemical/mechanical, or physical surface modification using continuous liquid supply. The device consists of a reservoir micromachined into the probe support that is connected to fluidic channels

  9. An atom counting and electrophilicity based QSTR approach

    Indian Academy of Sciences (India)

    Quantitative-structure-toxicity-relationship (QSTR) models are developed for predicting the toxicity (pIGC50) of 252 aliphatic compounds on Tetrahymena pyriformis. The single parameter models with a simple molecular descriptor, the number of atoms in the molecule, provide reasonable results. Better QSTR models with ...

  10. GNSS Clock Error Impacts on Radio Occultation Retrievals

    Science.gov (United States)

    Weiss, Jan; Sokolovskiy, Sergey; Schreiner, Bill; Yoon, Yoke

    2017-04-01

    We assess the impacts of GPS and GLONASS clock errors on radio occultation retrieval of bending angle, refractivity, and temperature from low Earth orbit. The major contributing factor is the interpretation of GNSS clock offsets sampled at 30 sec or longer intervals. Using 1 Hz GNSS clock estimates as truth we apply several interpolation and fitting schemes to evaluate how they affect the accuracy of atmospheric retrieval products. The results are organized by GPS and GLONASS space vehicle and the GNSS clock interpolation/fitting scheme. We find that bending angle error is roughly similar for all current GPS transmitters (about 0.7 mcrad) but note some differences related to the type of atomic oscillator onboard the transmitter satellite. GLONASS bending angle errors show more variation over the constellation and are approximately two times larger than GPS. An investigation of the transmitter clock spectra reveals this is due to more power in periods between 2-10 sec. Retrieved refractivity and temperature products show clear differences between GNSS satellite generations, and indicate that GNSS clocks sampled at intervals smaller than 5 sec significantly improve accuracy, particularly for GLONASS. We conclude by summarizing the tested GNSS clock estimation and application strategies in the context of current and future radio occultation missions.

  11. Cryptochromes and Biological Clocks

    Indian Academy of Sciences (India)

    Home; Journals; Resonance – Journal of Science Education; Volume 7; Issue 9. Cryptochromes and Biological Clocks. V R Bhagwat. General Article Volume 7 Issue 9 September 2002 pp 36-48. Fulltext. Click here to view fulltext PDF. Permanent link: http://www.ias.ac.in/article/fulltext/reso/007/09/0036-0048. Keywords.

  12. Accelerometer for Space Applications Based on Light-Pulse Atom Interferometry Project

    Data.gov (United States)

    National Aeronautics and Space Administration — We propose to build a compact, high-precision single-axis accelerometer based on atom interferometry that is applicable to operation in space environments. Based on...

  13. An Algorithm for the Detection of the Frequency Jumps in Space Clocks

    Science.gov (United States)

    2010-11-01

    Tavella, 2008, “Detection and identification of atomic clock anomalies,” Metrologia , 45, 127-133. [4] L. Galleani, 2008, “Detection of changes in clock...noise using the time–frequency spectrum,” Metrologia , 45, 143-153. [5] I. Sesia, L. Galleani, and P. Tavella, 2007, “Implementation of the Dynamic

  14. Cold beam of isotopically pure Yb atoms by deflection using 1D ...

    Indian Academy of Sciences (India)

    Both clock and EDM measurements gain from having a cold continuous beam of atoms that is separated from the cooling laser beams. For atomic clocks, a continuous beam avoids intermodulation or the Dick effect [10], seen in pulsed fountain clocks. For. EDM experiments, the electric-field plates can be brought very close ...

  15. ClockWork: a Real-Time Feasibility Analysis Tool

    NARCIS (Netherlands)

    Jansen, P.G.; Hanssen, F.T.Y.; Mullender, Sape J.

    ClockWork shows that we can improve the flexibility and efficiency of real-time kernels. We do this by proposing methods for scheduling based on so-called Real-Time Transactions. ClockWork uses Real-Time Transactions which allow scheduling decisions to be taken by the system. A programmer does not

  16. Frequency shift due to blackbody radiation in a cesium atomic fountain and improvement of the clock performances; Deplacement de frequence du au rayonnement du corps noir dans une fontaine atomique a cesium et amelioration des performances de l'horloge

    Energy Technology Data Exchange (ETDEWEB)

    Zhang, S

    2004-07-01

    FO1 was the first caesium fountain primary frequency standard in the world. The most recent evaluation in 2002 before improvement reached an accuracy of 1*10{sup -15} when operated with optical molasses. Working as an extremely precise and stable instrument, FO1 has contributed to fundamental physics and technical measurements: - Frequency comparison between Cs and Rb fountains over an interval of 5 years sets an upper limit for a possible variation of the fine structure constant as |alpha/alpha| < 2*10{sup -15}/y. The resolution is about 5 times better than the previous test in our laboratory. The projected accuracy of the space clock PHARAO is 1*10{sup -16}. We confirmed its Ramsey cavity performance by testing the phase difference between the two interaction zones in FO1. The measured temperature T dependent frequency shift of the Cs clock induced by the blackbody radiation field is given as nu(T)=154(6)*10{sup -6}*(T/300){sup 4}[1+{epsilon}(T/300){sup 2}] Hz with the theoretical value {epsilon} = 0,014. The obtained accuracy represents a 3 times improvement over the previous measurement by the PTB group. Some improvements have been carried out on FO1. The new FO1 version works directly with optical molasses loaded by a laser slowed atomic beam. The application of the adiabatic passage method to perform the state selection allows us to determine the atom number dependent frequency shifts due to the cold collision and cavity pulling effects at a level of of 10{sup -16}. Recently, the obtained frequency stability is 2,8*10{sup -14}*{tau}{sup -1/2} for about 4*10{sup 6} detected atoms. The accuracy is currently under evaluation, the expected value is a few times 10{sup -16}. (author)

  17. Oscillating perceptions: the ups and downs of the CLOCK protein in ...

    Indian Academy of Sciences (India)

    2008-12-31

    Dec 31, 2008 ... A functional mouse CLOCK protein has long been thought to be essential for mammalian circadian clockwork function, based mainly on studies of mice bearing a dominant negative, antimorphic mutation in the Clock gene. However, new discoveries using recently developed Clock-null mutant mice have ...

  18. Oscillating perceptions: the ups and downs of the CLOCK protein in ...

    Indian Academy of Sciences (India)

    A functional mouse CLOCK protein has long been thought to be essential for mammalian circadian clockwork function, based mainly on studies of mice bearing a dominant negative, antimorphic mutation in the Clock gene. However, new discoveries using recently developed Clock-null mutant mice have shaken up this ...

  19. [Clocks, Behavior, and Cognition].

    Science.gov (United States)

    Futamura, Akinori; Shiromaru, Azusa; Kuroda, Takeshi; Honma, Motoyasu; Kinno, Ryuta; Ono, Kenjiro; Kawamura, Mitsuru

    2017-06-01

    The nerve center responsible for controlling our circadian rhythm is located in a cluster of cells known as the suprachiasmatic nucleus in the hypothalamus. Various physiological functions such as sleep, arousal, blood pressure, body temperature, and hormone secretion are regulated in a 24-hour rhythm by this circuit. Somatic cells of other organs have a peripheral clock gene and by synchronizing the rhythm of the central and peripheral clocks, it is possible to live a healthy life. Due to aging and degenerative disease, circadian rhythm gradually collapses. Factors that can contribute to this include reduced expression of the time gene associated with photo stimulation, a reduction in neurotransmitter levels, and reduced melatonin production. Biological clocks play an important role in our emotions, cognitive function, and behavior. Sleep disorders and metabolic disease related to the circadian rhythm affect metabolic and endocrine activities via the autonomic nervous system and the intestinal bacterial flora. Shift work disorder is associated with insomnia and excessive drowsiness as individuals often work during their sleeping hours. Now time management is placed at the center of our society, and it is important to evaluate the medical risk of engaging in shift work. In frontotemporal dementia (FTD), the stereotypical behaviors may be associated with time. In some patients, multiple timed behaviors occupy a considerable part of the patient's daily life. Stereotypical behaviors in FTD are often considered in contrast to obsessive-compulsive disease (OCD). Studies of OCD have found a close correlation between clinical symptoms, cognitive function, and brain function.

  20. Clock spectroscopy of interacting bosons in deep optical lattices

    Science.gov (United States)

    Bouganne, R.; Bosch Aguilera, M.; Dareau, A.; Soave, E.; Beugnon, J.; Gerbier, F.

    2017-11-01

    We report on high-resolution optical spectroscopy of interacting bosonic 174Yb atoms in deep optical lattices with negligible tunneling. We prepare Mott insulator phases with singly- and doubly-occupied isolated sites and probe the atoms using an ultra-narrow ‘clock’ transition. Atoms in singly-occupied sites undergo long-lived Rabi oscillations. Atoms in doubly-occupied sites are strongly affected by interatomic interactions, and we measure their inelastic decay rates and energy shifts. We deduce from these measurements all relevant collisional parameters involving both clock states, in particular the intra- and inter-state scattering lengths.

  1. Accelerometer for Space Applications Based on Light-Pulse Atom Interferometry Project

    Data.gov (United States)

    National Aeronautics and Space Administration — We propose to design a compact, high-precision, single-axis accelerometer based on atom interferometry that is applicable to operation in space environments. Our...

  2. Tectonic blocks and molecular clocks

    Science.gov (United States)

    2016-01-01

    Evolutionary timescales have mainly used fossils for calibrating molecular clocks, though fossils only really provide minimum clade age constraints. In their place, phylogenetic trees can be calibrated by precisely dated geological events that have shaped biogeography. However, tectonic episodes are protracted, their role in vicariance is rarely justified, the biogeography of living clades and their antecedents may differ, and the impact of such events is contingent on ecology. Biogeographic calibrations are no panacea for the shortcomings of fossil calibrations, but their associated uncertainties can be accommodated. We provide examples of how biogeographic calibrations based on geological data can be established for the fragmentation of the Pangaean supercontinent: (i) for the uplift of the Isthmus of Panama, (ii) the separation of New Zealand from Gondwana, and (iii) for the opening of the Atlantic Ocean. Biogeographic and fossil calibrations are complementary, not competing, approaches to constraining molecular clock analyses, providing alternative constraints on the age of clades that are vital to avoiding circularity in investigating the role of biogeographic mechanisms in shaping modern biodiversity. This article is part of the themed issue ‘Dating species divergences using rocks and clocks’. PMID:27325840

  3. Comparative Sensitivities of Gravitational Wave Detectors Based on Atom Interferometers and Light Interferometers

    Science.gov (United States)

    Baker, John G.; Thorpe, J. I.

    2012-01-01

    We consider a class of proposed gravitational wave detectors based on multiple atomic interferometers separated by large baselines and referenced by common laser systems. We compute the sensitivity limits of these detectors due to intrinsic phase noise of the light sources, non-inertial motion of the light sources, and atomic shot noise and compare them to sensitivity limits for traditional light interferometers. We find that atom interferometers and light interferometers are limited in a nearly identical way by intrinsic phase noise and that both require similar mitigation strategies (e.g. multiple arm instruments) to reach interesting sensitivities. The sensitivity limit from motion of the light sources is slightly different and favors the atom interferometers in the low-frequency limit, although the limit in both cases is severe. Whether this potential advantage outweighs the additional complexity associated with including atom interferometers will require further study.

  4. A Novel Method of Clock Synchronization in Distributed Systems

    Science.gov (United States)

    Li, Gun; Niu, Meng-jie; Chai, Yang-shun; Chen, Xin; Ren, Yan-qiu

    2017-04-01

    Time synchronization plays an important role in the spacecraft formation flight and constellation autonomous navigation, etc. For the application of clock synchronization in a network system, it is not always true that all the observed nodes in the network are interconnected, therefore, it is difficult to achieve the high-precision time synchronization of a network system in the condition that a certain node can only obtain the measurement information of clock from a single neighboring node, but cannot obtain it from other nodes. Aiming at this problem, a novel method of high-precision time synchronization in a network system is proposed. In this paper, each clock is regarded as a node in the network system, and based on the definition of different topological structures of a distributed system, the three control algorithms of time synchronization under the following three cases are designed: without a master clock (reference clock), with a master clock (reference clock), and with a fixed communication delay in the network system. And the validity of the designed clock synchronization protocol is proved by both stability analysis and numerical simulation.

  5. Circadian clock regulation of skeletal muscle growth and repair.

    Science.gov (United States)

    Chatterjee, Somik; Ma, Ke

    2016-01-01

    Accumulating evidence indicates that the circadian clock, a transcriptional/translational feedback circuit that generates ~24-hour oscillations in behavior and physiology, is a key temporal regulatory mechanism involved in many important aspects of muscle physiology. Given the clock as an evolutionarily-conserved time-keeping mechanism that synchronizes internal physiology to environmental cues, locomotor activities initiated by skeletal muscle enable entrainment to the light-dark cycles on earth, thus ensuring organismal survival and fitness. Despite the current understanding of the role of molecular clock in preventing age-related sarcopenia, investigations into the underlying molecular pathways that transmit clock signals to the maintenance of skeletal muscle growth and function are only emerging. In the current review, the importance of the muscle clock in maintaining muscle mass during development, repair and aging, together with its contribution to muscle metabolism, will be discussed. Based on our current understandings of how tissue-intrinsic muscle clock functions in the key aspects muscle physiology, interventions targeting the myogenic-modulatory activities of the clock circuit may offer new avenues for prevention and treatment of muscular diseases. Studies of mechanisms underlying circadian clock function and regulation in skeletal muscle warrant continued efforts.

  6. The role of biological clock in glucose homeostasis 

    Directory of Open Access Journals (Sweden)

    Piotr Chrościcki

    2013-06-01

    Full Text Available The mechanism of the biological clock is based on a rhythmic expression of clock genes and clock-controlled genes. As a result of their transcripto-translational associations, endogenous rhythms in the synthesis of key proteins of various physiological and metabolic processes are created. The major timekeeping mechanism for these rhythms exists in the central nervous system. The master circadian clock, localized in suprachiasmatic nucleus (SCN, regulates multiple metabolic pathways, while feeding behavior and metabolite availability can in turn regulate the circadian clock. It is also suggested that in the brain there is a food entrainable oscillator (FEO or oscillators, resulting in activation of both food anticipatory activity and hormone secretion that control digestion processes. Moreover, most cells and tissues express autonomous clocks. Maintenance of the glucose homeostasis is particularly important for the proper function of the body, as this sugar is the main source of energy for the brain, retina, erythrocytes and skeletal muscles. Thus, glucose production and utilization are synchronized in time. The hypothalamic excited orexin neurons control energy balance of organism and modulate the glucose production and utilization. Deficiency of orexin action results in narcolepsy and weight gain, whereas glucose and amino acids can affect activity of the orexin cells. Large-scale genetic studies in rodents and humans provide evidence for the involvement of disrupted clock gene expression rhythms in the pathogenesis of obesity and type 2 diabetes. In general, the current lifestyle of the developed modern societies disturbs the action of biological clock

  7. Radium single-ion optical clock

    CERN Document Server

    Versolato, O O; Jungmann, K; Timmermans, R G E; Willmann, L; Wilschut, H W

    2011-01-01

    We explore the potential of the electric quadrupole transitions $7s\\,^2S_{1/2}$ - $6d\\,^2D_{3/2}$, $6d\\,^2D_{5/2}$ in radium isotopes as single-ion optical frequency standards. The frequency shifts of the clock transitions due to external fields and the corresponding uncertainties are calculated. Several competitive $^A$Ra$^+$ candidates with $A=$ 223 - 229 are identified. In particular, we show that the transition $7s\\,^2S_{1/2}\\,(F=2,m_F=0)$ - $6d\\,^2D_{3/2}\\,(F=0,m_F=0)$ at 828 nm in $^{223}$Ra$^+$, with no linear Zeeman and electric quadrupole shifts, stands out as a relatively simple case, which could be exploited as a compact, robust, and low-cost atomic clock operating at a fractional frequency uncertainty of $10^{-17}$. With more experimental effort, the $^{223,225,226}$Ra$^+$ clocks could be pushed to a projected performance reaching the $10^{-18}$ level.

  8. CSAC Characterization and Its Impact on GNSS Clock Augmentation Performance.

    Science.gov (United States)

    Fernández, Enric; Calero, David; Parés, M Eulàlia

    2017-02-14

    Chip Scale Atomic Clocks (CSAC) are recently-developed electronic instruments that, when used together with a Global Navigation Satellite Systems (GNSS) receiver, help improve the performance of GNSS navigation solutions in certain conditions (i.e., low satellite visibility). Current GNSS receivers include a Temperature Compensated Cristal Oscillator (TCXO) clock characterized by a short-term stability (τ = 1 s) of 10-9 s that leads to an error of 0.3 m in pseudorange measurements. The CSAC can achieve a short-term stability of 2.5 × 10-12 s, which implies a range error of 0.075 m, making for an 87.5% improvement over TCXO. Replacing the internal TCXO clock of GNSS receivers with a higher frequency stability clock such as a CSAC oscillator improves the navigation solution in terms of low satellite visibility positioning accuracy, solution availability, signal recovery (holdover), multipath and jamming mitigation and spoofing attack detection. However, CSAC suffers from internal systematic instabilities and errors that should be minimized if optimal performance is desired. Hence, for operating CSAC at its best, the deterministic errors from the CSAC need to be properly modelled. Currently, this modelling is done by determining and predicting the clock frequency stability (i.e., clock bias and bias rate) within the positioning estimation process. The research presented in this paper aims to go a step further, analysing the correlation between temperature and clock stability noise and the impact of its proper modelling in the holdover recovery time and in the positioning performance. Moreover, it shows the potential of fine clock coasting modelling. With the proposed model, an improvement in vertical positioning precision of around 50% with only three satellites can be achieved. Moreover, an increase in the navigation solution availability is also observed, a reduction of holdover recovery time from dozens of seconds to only a few can be achieved.

  9. CSAC Characterization and Its Impact on GNSS Clock Augmentation Performance

    Directory of Open Access Journals (Sweden)

    Enric Fernández

    2017-02-01

    Full Text Available Chip Scale Atomic Clocks (CSAC are recently-developed electronic instruments that, when used together with a Global Navigation Satellite Systems (GNSS receiver, help improve the performance of GNSS navigation solutions in certain conditions (i.e., low satellite visibility. Current GNSS receivers include a Temperature Compensated Cristal Oscillator (TCXO clock characterized by a short-term stability (τ = 1 s of 10−9 s that leads to an error of 0.3 m in pseudorange measurements. The CSAC can achieve a short-term stability of 2.5 × 10−12 s, which implies a range error of 0.075 m, making for an 87.5% improvement over TCXO. Replacing the internal TCXO clock of GNSS receivers with a higher frequency stability clock such as a CSAC oscillator improves the navigation solution in terms of low satellite visibility positioning accuracy, solution availability, signal recovery (holdover, multipath and jamming mitigation and spoofing attack detection. However, CSAC suffers from internal systematic instabilities and errors that should be minimized if optimal performance is desired. Hence, for operating CSAC at its best, the deterministic errors from the CSAC need to be properly modelled. Currently, this modelling is done by determining and predicting the clock frequency stability (i.e., clock bias and bias rate within the positioning estimation process. The research presented in this paper aims to go a step further, analysing the correlation between temperature and clock stability noise and the impact of its proper modelling in the holdover recovery time and in the positioning performance. Moreover, it shows the potential of fine clock coasting modelling. With the proposed model, an improvement in vertical positioning precision of around 50% with only three satellites can be achieved. Moreover, an increase in the navigation solution availability is also observed, a reduction of holdover recovery time from dozens of seconds to only a few can be achieved.

  10. A high stability optical frequency reference based on thermal calcium atoms

    Science.gov (United States)

    2011-05-21

    simple, compact optical frequency standard based upon thennal calcium atoms. Using a Ramsey- Borde specu·ometer we excite features with linewidths < 5kHz...Optical Frequency (kHz) Figure 2: Ramsey- Borde fringes , shown here with both recoil components. Fringe width is < 5kHz (FWHM). tlli.s theoretical value...send ~ 2 m W of the light to a fom-beam Ramsey- Borde spectrometer that excites the atoms in a thermal beam [3]. Atoms emerge from an aperture in theCa

  11. Enrichment of true positives from structural alerts through the use of novel atomic fragment based descriptors

    DEFF Research Database (Denmark)

    Long, A.; Rydberg, Patrik

    2013-01-01

    To enhance the discrimination rate for methods applying structural alerts and biotransformation rules in the prediction of toxicity and drug metabolism we have developed a set of novel fragment based atomic descriptors. These atomic descriptors encode the properties of the fragments separating...... an atom from the closest end of a branch or the molecule. The end of a branch and the end of a molecule, as well as the selection of the fragments, are made by an algorithm that uses only the distance matrix of the molecule. The novel descriptors are applied to a small set of biotransformation rules...

  12. Fast and accurate grid representations for atom-based docking with partner flexibility.

    Science.gov (United States)

    de Vries, Sjoerd J; Zacharias, Martin

    2017-06-30

    Macromolecular docking methods can broadly be divided into geometric and atom-based methods. Geometric methods use fast algorithms that operate on simplified, grid-like molecular representations, while atom-based methods are more realistic and flexible, but far less efficient. Here, a hybrid approach of grid-based and atom-based docking is presented, combining precalculated grid potentials with neighbor lists for fast and accurate calculation of atom-based intermolecular energies and forces. The grid representation is compatible with simultaneous multibody docking and can tolerate considerable protein flexibility. When implemented in our docking method ATTRACT, grid-based docking was found to be ∼35x faster. With the OPLSX forcefield instead of the ATTRACT coarse-grained forcefield, the average speed improvement was >100x. Grid-based representations may allow atom-based docking methods to explore large conformational spaces with many degrees of freedom, such as multiple macromolecules including flexibility. This increases the domain of biological problems to which docking methods can be applied. © 2017 Wiley Periodicals, Inc. © 2017 Wiley Periodicals, Inc.

  13. Effect of atom- and group-based truncations on biomolecules simulated with reaction-field electrostatics

    Science.gov (United States)

    Ni, Boris

    2011-01-01

    The performance of the reaction-field method of electrostatics is tested in molecular dynamics simulations of protein human interleukin-4 and a short DNA fragment in explicit solvent. Two truncation schemes are considered: one based on the position of atomic charges in water molecules and the other on the position of groups of charges. The group-based truncation leads to the melting of the DNA double helix. In contrast, the atom-based truncation maintains the helical structure intact. Similarly for the protein, the group-based truncation leads to an unfolding at pH 2 while the atom-based truncation produces stable trajectories at low and normal pH, in agreement with experiment. Artificial repulsion between charged residues associated with the group-based truncation is identified as the microscopic reason behind unfolding of the protein. Implications of different truncation schemes in reaction-field simulations of biomolecules are discussed. PMID:21311933

  14. Restoring the lattice of Si-based atom probe reconstructions for enhanced information on dopant positioning.

    Science.gov (United States)

    Breen, Andrew J; Moody, Michael P; Ceguerra, Anna V; Gault, Baptiste; Araullo-Peters, Vicente J; Ringer, Simon P

    2015-12-01

    The following manuscript presents a novel approach for creating lattice based models of Sb-doped Si directly from atom probe reconstructions for the purposes of improving information on dopant positioning and directly informing quantum mechanics based materials modeling approaches. Sophisticated crystallographic analysis techniques are used to detect latent crystal structure within the atom probe reconstructions with unprecedented accuracy. A distortion correction algorithm is then developed to precisely calibrate the detected crystal structure to the theoretically known diamond cubic lattice. The reconstructed atoms are then positioned on their most likely lattice positions. Simulations are then used to determine the accuracy of such an approach and show that improvements to short-range order measurements are possible for noise levels and detector efficiencies comparable with experimentally collected atom probe data. Copyright © 2015 Elsevier B.V. All rights reserved.

  15. A Light Clock Satisfying the Clock Hypothesis of Special Relativity

    Science.gov (United States)

    West, Joseph

    2007-01-01

    The design of the FMEL, a floor-mirrored Einstein-Langevin "light clock", is introduced. The clock provides a physically intuitive manner to calculate and visualize the time dilation effects for a spatially extended set of observers (an accelerated "frame") undergoing unidirectional acceleration or observers on a rotating cylinder of constant…

  16. Regulation of behavioral circadian rhythms and clock protein PER1 by the deubiquitinating enzyme USP2

    Directory of Open Access Journals (Sweden)

    Yaoming Yang

    2012-06-01

    Endogenous 24-hour rhythms are generated by circadian clocks located in most tissues. The molecular clock mechanism is based on feedback loops involving clock genes and their protein products. Post-translational modifications, including ubiquitination, are important for regulating the clock feedback mechanism. Previous work has focused on the role of ubiquitin ligases in the clock mechanism. Here we show a role for the rhythmically-expressed deubiquitinating enzyme ubiquitin specific peptidase 2 (USP2 in clock function. Mice with a deletion of the Usp2 gene (Usp2 KO display a longer free-running period of locomotor activity rhythms and altered responses of the clock to light. This was associated with altered expression of clock genes in synchronized Usp2 KO mouse embryonic fibroblasts and increased levels of clock protein PERIOD1 (PER1. USP2 can be coimmunoprecipitated with several clock proteins but directly interacts specifically with PER1 and deubiquitinates it. Interestingly, this deubiquitination does not alter PER1 stability. Taken together, our results identify USP2 as a new core component of the clock machinery and demonstrate a role for deubiquitination in the regulation of the circadian clock, both at the level of the core pacemaker and its response to external cues.

  17. Regulation of behavioral circadian rhythms and clock protein PER1 by the deubiquitinating enzyme USP2.

    Science.gov (United States)

    Yang, Yaoming; Duguay, David; Bédard, Nathalie; Rachalski, Adeline; Baquiran, Gerardo; Na, Chan Hyun; Fahrenkrug, Jan; Storch, Kai-Florian; Peng, Junmin; Wing, Simon S; Cermakian, Nicolas

    2012-08-15

    Endogenous 24-hour rhythms are generated by circadian clocks located in most tissues. The molecular clock mechanism is based on feedback loops involving clock genes and their protein products. Post-translational modifications, including ubiquitination, are important for regulating the clock feedback mechanism. Previous work has focused on the role of ubiquitin ligases in the clock mechanism. Here we show a role for the rhythmically-expressed deubiquitinating enzyme ubiquitin specific peptidase 2 (USP2) in clock function. Mice with a deletion of the Usp2 gene (Usp2 KO) display a longer free-running period of locomotor activity rhythms and altered responses of the clock to light. This was associated with altered expression of clock genes in synchronized Usp2 KO mouse embryonic fibroblasts and increased levels of clock protein PERIOD1 (PER1). USP2 can be coimmunoprecipitated with several clock proteins but directly interacts specifically with PER1 and deubiquitinates it. Interestingly, this deubiquitination does not alter PER1 stability. Taken together, our results identify USP2 as a new core component of the clock machinery and demonstrate a role for deubiquitination in the regulation of the circadian clock, both at the level of the core pacemaker and its response to external cues.

  18. Using Integer Clocks to Verify the Timing-Sync Sensor Network Protocol

    Science.gov (United States)

    Huang, Xiaowan; Singh, Anu; Smolka, Scott A.

    2010-01-01

    We use the UPPAAL model checker for Timed Automata to verify the Timing-Sync time-synchronization protocol for sensor networks (TPSN). The TPSN protocol seeks to provide network-wide synchronization of the distributed clocks in a sensor network. Clock-synchronization algorithms for sensor networks such as TPSN must be able to perform arithmetic on clock values to calculate clock drift and network propagation delays. They must be able to read the value of a local clock and assign it to another local clock. Such operations are not directly supported by the theory of Timed Automata. To overcome this formal-modeling obstacle, we augment the UPPAAL specification language with the integer clock derived type. Integer clocks, which are essentially integer variables that are periodically incremented by a global pulse generator, greatly facilitate the encoding of the operations required to synchronize clocks as in the TPSN protocol. With this integer-clock-based model of TPSN in hand, we use UPPAAL to verify that the protocol achieves network-wide time synchronization and is devoid of deadlock. We also use the UPPAAL Tracer tool to illustrate how integer clocks can be used to capture clock drift and resynchronization during protocol execution

  19. The chlorate-iodine-nitrous acid clock reaction.

    Directory of Open Access Journals (Sweden)

    Rafaela T P Sant'Anna

    Full Text Available A new clock reaction based on chlorate, iodine and nitrous acid is presented. The induction period of this new clock reaction decreases when the initial concentrations of chlorate, nitrous acid and perchloric acid increase, but it is independent on the initial iodine concentration. The proposed mechanism is based on the LLKE autocatalytic mechanism for the chlorite-iodide reaction and the initial reaction between chlorate and nitrous acid to produce nitrate and chlorite. This new clock reaction opens the possibility for a new family of oscillating reactions containing chlorate or nitrous acid, which in both cases has not been observed until now.

  20. Coherent and dynamic beam splitting based on light storage in cold atoms

    OpenAIRE

    Kwang-Kyoon Park; Tian-Ming Zhao; Jong-Chan Lee; Young-Tak Chough; Yoon-Ho Kim

    2016-01-01

    We demonstrate a coherent and dynamic beam splitter based on light storage in cold atoms. An input weak laser pulse is first stored in a cold atom ensemble via electromagnetically-induced transparency (EIT). A set of counter-propagating control fields, applied at a later time, retrieves the stored pulse into two output spatial modes. The high visibility interference between the two output pulses clearly demonstrates that the beam splitting process is coherent. Furthermore, by manipulating the...

  1. The Brazilian time and frequency atomic standards program

    Directory of Open Access Journals (Sweden)

    Mushtaq Ahmed

    2008-06-01

    Full Text Available Cesium atomic beam clocks have been the workhorse for many demanding applications in science and technology for the past four decades. Tests of the fundamental laws of physics and the search for minute changes in fundamental constants, the synchronization of telecommunication networks, and realization of the satellite-based global positioning system would not be possible without atomic clocks. The adoption of optical cooling and trapping techniques, has produced a major advance in atomic clock precision. Cold-atom fountain and compact cold-atom clocks have also been developed. Measurement precision of a few parts in 10(15 has been demonstrated for a cold-atom fountain clock. We present here an overview of the time and frequency metrology program based on cesium atoms under development at USP São Carlos. This activity consists of construction and characterization of atomic-beam, and several variations of cold-atom clocks. We discuss the basic working principles, construction, evaluation, and important applications of atomic clocks in the Brazilian program.Relógios atômicos de feixe de Césio têm sido a base para diversas aplicações em ciência e tecnologia nas últimas quatro décadas. Testes de leis fundamentais de física, buscas por mínimas variações em constantes fundamentais, sincronização de redes de telecomunicações e o funcionamento do sistema de posicionamento global, baseado em satélites de navegação, não seriam possíveis sem os relógios atômicos. A adoção de técnicas de aprisionamento e resfriamento ópticos tem permitido um grande avanço na precisão dos relógios atômicos. Chafarizes de átomos frios e relógios compactos de átomos frios também têm sido desenvolvidos. Precisões de medida de algumas partes em 1015 foram demonstradas para relógios do tipo chafariz de átomos frios. Apresentamos uma visão geral do programa de metrologia de tempo e freqüência baseado em átomos de césio, em

  2. Hybrid statistics-simulations based method for atom-counting from ADF STEM images

    Energy Technology Data Exchange (ETDEWEB)

    De wael, Annelies, E-mail: annelies.dewael@uantwerpen.be [Electron Microscopy for Materials Science (EMAT), University of Antwerp, Groenenborgerlaan 171, 2020 Antwerp (Belgium); De Backer, Annick [Electron Microscopy for Materials Science (EMAT), University of Antwerp, Groenenborgerlaan 171, 2020 Antwerp (Belgium); Jones, Lewys; Nellist, Peter D. [Department of Materials, University of Oxford, Parks Road, OX1 3PH Oxford (United Kingdom); Van Aert, Sandra, E-mail: sandra.vanaert@uantwerpen.be [Electron Microscopy for Materials Science (EMAT), University of Antwerp, Groenenborgerlaan 171, 2020 Antwerp (Belgium)

    2017-06-15

    A hybrid statistics-simulations based method for atom-counting from annular dark field scanning transmission electron microscopy (ADF STEM) images of monotype crystalline nanostructures is presented. Different atom-counting methods already exist for model-like systems. However, the increasing relevance of radiation damage in the study of nanostructures demands a method that allows atom-counting from low dose images with a low signal-to-noise ratio. Therefore, the hybrid method directly includes prior knowledge from image simulations into the existing statistics-based method for atom-counting, and accounts in this manner for possible discrepancies between actual and simulated experimental conditions. It is shown by means of simulations and experiments that this hybrid method outperforms the statistics-based method, especially for low electron doses and small nanoparticles. The analysis of a simulated low dose image of a small nanoparticle suggests that this method allows for far more reliable quantitative analysis of beam-sensitive materials. - Highlights: • A hybrid method for atom-counting from ADF STEM images is introduced. • Image simulations are incorporated into a statistical framework in a reliable manner. • Limits of the existing methods for atom-counting are far exceeded. • Reliable counting results from an experimental low dose image are obtained. • Progress towards reliable quantitative analysis of beam-sensitive materials is made.

  3. Model-based investigation of the circadian clock and cell cycle coupling in mouse embryonic fibroblasts: Prediction of RevErb-α up-regulation during mitosis.

    Science.gov (United States)

    Traynard, Pauline; Feillet, Céline; Soliman, Sylvain; Delaunay, Franck; Fages, François

    2016-11-01

    Experimental observations have put in evidence autonomous self-sustained circadian oscillators in most mammalian cells, and proved the existence of molecular links between the circadian clock and the cell cycle. Some mathematical models have also been built to assess conditions of control of the cell cycle by the circadian clock. However, recent studies in individual NIH3T3 fibroblasts have shown an unexpected acceleration of the circadian clock together with the cell cycle when the culture medium is enriched with growth factors, and the absence of such acceleration in confluent cells. In order to explain these observations, we study a possible entrainment of the circadian clock by the cell cycle through a regulation of clock genes around the mitosis phase. We develop a computational model and a formal specification of the observed behavior to investigate the conditions of entrainment in period and phase. We show that either the selective activation of RevErb-α or the selective inhibition of Bmal1 transcription during the mitosis phase, allow us to fit the experimental data on both period and phase, while a uniform inhibition of transcription during mitosis seems incompatible with the phase data. We conclude on the arguments favoring the RevErb-α up-regulation hypothesis and on some further predictions of the model. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.

  4. Analysis list: CLOCK [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available CLOCK Blood,Digestive tract + hg19 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/target/CLOCK....1.tsv http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/target/CLOCK.5.tsv http://dbarchive.biosc...iencedbc.jp/kyushu-u/hg19/target/CLOCK.10.tsv http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/colo/CLOCK.Blo...od.tsv,http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/colo/CLOCK.Digestive_tract

  5. Transcriptional oscillation of canonical clock genes in mouse peripheral tissues

    Directory of Open Access Journals (Sweden)

    Nakahata Yasukazu

    2004-10-01

    Full Text Available Abstract Background The circadian rhythm of about 24 hours is a fundamental physiological function observed in almost all organisms from prokaryotes to humans. Identification of clock genes has allowed us to study the molecular bases for circadian behaviors and temporal physiological processes such as hormonal secretion, and has prompted the idea that molecular clocks reside not only in a central pacemaker, the suprachiasmatic nuclei (SCN of hypothalamus in mammals, but also in peripheral tissues, even in immortalized cells. Furthermore, previous molecular dissection revealed that the mechanism of circadian oscillation at a molecular level is based on transcriptional regulation of clock and clock-controlled genes. Results We systematically analyzed the mRNA expression of clock and clock-controlled genes in mouse peripheral tissues. Eight genes (mBmal1, mNpas2, mRev-erbα, mDbp, mRev-erbβ, mPer3, mPer1 and mPer2; given in the temporal order of the rhythm peak showed robust circadian expressions of mRNAs in all tissues except testis, suggesting that these genes are core molecules of the molecular biological clock. The bioinformatics analysis revealed that these genes have one or a combination of 3 transcriptional elements (RORE, DBPE, and E-box, which are conserved among human, mouse, and rat genome sequences, and indicated that these 3 elements may be responsible for the biological timing of expression of canonical clock genes. Conclusions The observation of oscillatory profiles of canonical clock genes is not only useful for physiological and pathological examination of the circadian clock in various organs but also important for systematic understanding of transcriptional regulation on a genome-wide basis. Our finding of the oscillatory expression of canonical clock genes with a temporal order provides us an interesting hypothesis, that cyclic timing of all clock and clock-controlled genes may be dependent on several transcriptional elements

  6. Atomic layer deposition of scandium-based oxides

    Energy Technology Data Exchange (ETDEWEB)

    Nyns, Laura; Lisoni, Judit G.; Bosch, Geert van den; Elshocht, Sven van; Houdt, Jan van [IMEC, Leuven (Belgium)

    2014-02-15

    Gd{sub x}Sc{sub 2-x}O{sub 3} and Al{sub x}Sc{sub 2-x}O{sub 3} have been investigated as potential high-k intergate dielectric (IGD) in planar NAND flash technology, such as hybrid floating gate (HFG). We have examined the atomic layer deposition (ALD) of Sc{sub 2}O{sub 3}, Gd{sub x}Sc{sub 2-x}O{sub 3}, and Al{sub x}Sc{sub 2-x}O{sub 3} on Si using Sc(MeCp){sub 3}, Gd({sup i}PrCp){sub 3}, TMA, and H{sub 2}O as precursors. The composition of Gd{sub x}Sc{sub 2-x}O{sub 3} and Al{sub x}Sc{sub 2-x}O{sub 3} ranged from 4% to 76% Gd and from 7% to 66% Al, respectively. All compositions show linear growth behavior. While pure Sc{sub 2}O{sub 3} is crystalline as-deposited, the layer becomes amorphous once ∝20% of Al is added. The (222) reflection of the cubic phase is also seen for Gd{sub x}Sc{sub 2-x}O{sub 3} with less than 9% Gd. The bandgap of as-deposited Gd{sub x}Sc{sub 2-x}O{sub 3} decreases with increasing Gd content while the opposite trend is observed for Al{sub x}Sc{sub 2-x}O{sub 3}. A k-value of ∝21 can be obtained for Gd{sub x}Sc{sub 2-x}O{sub 3} with approximately 26-52% Gd, irrespective of the Gd content. For Al{sub x}Sc{sub 2-x}O{sub 3} on the other hand, a maximum k-value of ∝19 is achieved with ∝48% Al. Although the k-value of Al{sub x}Sc{sub 2-x}O{sub 3} is lower than that of Gd{sub x}Sc{sub 2-x}O{sub 3}, its large breakdown field makes this material more suitable for HFG flash applications. (copyright 2014 WILEY-VCH Verlag GmbH and Co. KGaA, Weinheim)

  7. Comparison of Atom Interferometers and Light Interferometers as Space-Based Gravitational Wave Detectors

    Science.gov (United States)

    Baker, John G.

    2012-01-01

    We consider a class of proposed gravitational wave detectors based on multiple atomic interferometers separated by large baselines and referenced by common laser systems. We compute the sensitivity limits of these detectors due to intrinsic phase noise of the light sources, non-inertial motion of the light sources, and atomic shot noise and compare them to sensitivity limits for traditional light interferometers. We find that atom interferometers and light interferometers are limited in a nearly identical way by intrinsic phase noise and that both require similar mitigation strategies (e.g. multiple arm instruments) to reach interesting sensitivities. The sensitivity limit from motion of the light sources is slightly different and favors the atom interferometers in the low-frequency limit, although the limit in both cases is severe.

  8. Efficient polarization insensitive complex wavefront control using Huygens' metasurfaces based on dielectric resonant meta-atoms

    CERN Document Server

    Chong, Katie E; Staude, Isabelle; James, Anthony; Dominguez, Jason; Liu, Sheng; Subramania, Ganapathi S; Decker, Manuel; Neshev, Dragomir N; Brener, Igal; Kivshar, Yuri S

    2016-01-01

    Subwavelength-thin metasurfaces have shown great promises for the control of optical wavefronts, thus opening new pathways for the development of efficient flat optics. In particular, Huygens' metasurfaces based on all-dielectric resonant meta-atoms have already shown a huge potential for practical applications with their polarization insensitivity and high transmittance efficiency. Here, we experimentally demonstrate a polarization insensitive holographic Huygens' metasurface based on dielectric resonant meta-atoms capable of complex wavefront control at telecom wavelengths. Our metasurface produces a hologram image in the far-field with 82% transmittance efficiency and 40% imaging efficiency. Such efficient complex wavefront control shows that Huygens' metasurfaces based on resonant dielectric meta-atoms are a big step towards practical applications of metasurfaces in wavefront design related technologies, including computer-generated holograms, ultra-thin optics, security and data storage devices.

  9. Clock Gating Based Energy Efficient and Thermal Aware Design of Latin Unicode Reader for Natural Language Processing on FPGA

    DEFF Research Database (Denmark)

    Singh, Ritu; Kalia, Kartik; Minver, M. H.

    2016-01-01

    Abstract-In this paper we have aimed to design an energy efficient and thermally aware Latin Unicode Reader. Our design is based on 28nm FPGA (Kintex-7) and 40nm FPGA (Artix-7). In order to test the portability of our design, we are operating our design with respective frequency of different mobile...

  10. Comparing laser interferometry and atom interferometry approaches to space-based gravitational-wave measurement

    Science.gov (United States)

    Ira Thorpe, James; Jennrich, Oliver; McNamara, Paul; Baker, John G.

    2012-07-01

    The science enabled by a space-based low-frequency gravitational-wave instrument is a high-priority objective of the international astronomy community. Mission concepts based on laser interferometry, such as the Laser Interferometer Space Antenna (LISA), have been thoroughly studied and determined to be capable of delivering significant science returns. Ongoing developments in laboratory atom interferometry techniques have inspired new gravitational-wave mission concepts. We present a comparative analysis of LISA-like light interferometer systems and atom interferometer systems for gravitational-wave detection. Specific attention is paid to the sources of instrumental noise that are most important for light interferometer systems. We find that the response to laser frequency noise is identical in light interferometer and atom interferometer systems and that similar mitigation strategies (e.g. multiple-arm interferometers) must be employed to reach interesting gravitational wave sensitivities. Response to acceleration of the optical platforms is slightly different, allowing smaller spacecraft separations in the atom interferometry approach, but the acceleration noise requirements are similar. Based on this analysis, we find no clear advantage of the atom interferometry approach over traditional laser interferometry.

  11. Coherent population trapping resonances in Cs-Ne vapor microcells for miniature clocks applications

    Science.gov (United States)

    Boudot, R.; Dziuban, P.; Hasegawa, M.; Chutani, R. K.; Galliou, S.; Giordano, V.; Gorecki, C.

    2011-01-01

    We report the characterization of dark line resonances observed in Cs vapor microcells filled with a unique neon (Ne) buffer gas. The impact on the coherent population trapping (CPT) resonance of some critical external parameters such as laser intensity, cell temperature, and microwave power is studied. We show the suppression of the first-order light shift by proper choice of the microwave power. The temperature dependence of the Cs ground state hyperfine resonance frequency is shown to be canceled in the 77-80 °C range for various Ne buffer gas pressures. The necessity to adjust the Ne buffer gas pressure or the cell dimensions to optimize the CPT signal height at the frequency inversion temperature is pointed out. Based on such Cs-Ne microcells, we preliminary demonstrate a 852 nm vertical cavity surface emitted laser (VCSEL)-modulated based CPT atomic clock exhibiting a short term fractional frequency instability σy(τ)=1.5×10-10τ-1/2 until 30 s. These results, similar to those published in the literature by others groups, prove the potential of our original microcell technology in view of the development of high-performance chip scale atomic clocks.

  12. Intermolecular orientations in liquid acetonitrile: new insights based on diffraction measurements and all-atom simulations

    CERN Document Server

    Pothoczki, Szilvia

    2016-01-01

    Intermolecular correlations in liquid acetonitrile (CH3CN) have been revisited by calculating orientational correlation functions. In the present approach, hydrogen atoms are included, so that a concept applicable for molecules of (nearly) tetrahedral shape can be exploited. In this way molecular arrangements are elucidated not only for closest neighbours but also extending well beyond the first coordination sphere. Thus a complementary viewpoint is provided to the more popular dipole-dipole correlations. Our calculations are based on large structural models that were obtained by applying diffraction data and partial radial distribution functions from potential-based (all-atom) molecular dynamics simulation simultaneously, within the framework of the Reverse Monte Carlo method.

  13. Physiological links of circadian clock and biological clock of aging

    Directory of Open Access Journals (Sweden)

    Fang Liu

    2017-01-01

    Full Text Available ABSTRACT Circadian rhythms orchestrate biochemical and physiological processes in living organisms to respond the day/night cycle. In mammals, nearly all cells hold self-sustained circadian clocks meanwhile couple the intrinsic rhythms to systemic changes in a hierarchical manner. The suprachiasmatic nucleus (SCN of the hypothalamus functions as the master pacemaker to initiate daily synchronization according to the photoperiod, in turn determines the phase of peripheral cellular clocks through a variety of signaling relays, including endocrine rhythms and metabolic cycles. With aging, circadian desynchrony occurs at the expense of peripheral metabolic pathologies and central neurodegenerative disorders with sleep symptoms, and genetic ablation of circadian genes in model organisms resembled the aging-related features. Notably, a number of studies have linked longevity nutrient sensing pathways in modulating circadian clocks. Therapeutic strategies that bridge the nutrient sensing pathways and circadian clock might be rational designs to defy aging.

  14. Brain clocks for morning and evening behaviour

    Indian Academy of Sciences (India)

    Unknown

    228 taneously synthesized transcripts of a clock gene, mPer1, in one of the two lobes, and transcripts of another clock gene,. Bmal1, in the other, suggesting antiphasic nature of the two bilaterally symmetric SCN lobes. Further, it was ... resolution of clock cell targeting. The authors developed. Figure 1. Clock neurons in the ...

  15. Simulating Future GPS Clock Scenarios with Two Composite Clock Algorithms

    Science.gov (United States)

    2010-11-01

    Alexandria, Virginia), pp. 223-242. [8] C. A. Greenhall, 2007, “A Kalman filter clock ensemble algorithm that admits measurement noise,” Metrologia ...43, S311-S321. [9] J. A. Davis, C. A. Greenhall, and P. W. Stacey, 2005, “A Kalman filter clock algorithm for use in the presence of flicker frequency modulation noise,” Metrologia , 42, 1-10.

  16. Initiating heavy-atom-based phasing by multi-dimensional molecular replacement.

    Science.gov (United States)

    Pedersen, Bjørn Panyella; Gourdon, Pontus; Liu, Xiangyu; Karlsen, Jesper Lykkegaard; Nissen, Poul

    2016-03-01

    To obtain an electron-density map from a macromolecular crystal the phase problem needs to be solved, which often involves the use of heavy-atom derivative crystals and concomitant heavy-atom substructure determination. This is typically performed by dual-space methods, direct methods or Patterson-based approaches, which however may fail when only poorly diffracting derivative crystals are available. This is often the case for, for example, membrane proteins. Here, an approach for heavy-atom site identification based on a molecular-replacement parameter matrix (MRPM) is presented. It involves an n-dimensional search to test a wide spectrum of molecular-replacement parameters, such as different data sets and search models with different conformations. Results are scored by the ability to identify heavy-atom positions from anomalous difference Fourier maps. The strategy was successfully applied in the determination of a membrane-protein structure, the copper-transporting P-type ATPase CopA, when other methods had failed to determine the heavy-atom substructure. MRPM is well suited to proteins undergoing large conformational changes where multiple search models should be considered, and it enables the identification of weak but correct molecular-replacement solutions with maximum contrast to prime experimental phasing efforts.

  17. Development of collisional data base for elementary processes of electron scattering by atoms and molecules

    Energy Technology Data Exchange (ETDEWEB)

    Marinković, Bratislav P., E-mail: bratislav.marinkovic@ipb.ac.rs [Institute of Physics, University of Belgrade, Pregrevica 118, 11080 Belgrade (Serbia); School of Electrical and Computer Engineering of Applied Studies, Vojvode Stepe 283, 11000 Belgrade (Serbia); Vujčić, Veljko [Astronomical Observatory Belgade, Volgina 7, 11050 Belgrade (Serbia); Faculty of Organizational Sciences, University of Belgrade, Jove Ilića 154, 11000 Belgrade (Serbia); Sushko, Gennady [MBN Research Center, Altenhöferallee 3, 60438 Frankfurt am Main (Germany); Vudragović, Dušan [Institute of Physics, University of Belgrade, Pregrevica 118, 11080 Belgrade (Serbia); Marinković, Dara B. [Faculty of Organizational Sciences, University of Belgrade, Jove Ilića 154, 11000 Belgrade (Serbia); Đorđević, Stefan; Ivanović, Stefan; Nešić, Milutin [School of Electrical and Computer Engineering of Applied Studies, Vojvode Stepe 283, 11000 Belgrade (Serbia); Jevremović, Darko [Astronomical Observatory Belgade, Volgina 7, 11050 Belgrade (Serbia); Solov’yov, Andrey V. [MBN Research Center, Altenhöferallee 3, 60438 Frankfurt am Main (Germany); Mason, Nigel J. [The Open University, Department of Physical Sciences, Walton Hall, Milton Keynes MK7 6AA (United Kingdom)

    2015-07-01

    Highlights: • BEAMDB database maintaining electron/atom-molecule collisional data has been created. • The DB is MySQL, the web server is Nginx and Python application server is Gunicorn. • Only data that have been previously published and formally refereed are included. • Data protocol for exchanging and representing data is in the “xsams” xml format. • BEAMDB becomes a node within the VAMDC consortium and radiation damage RADAM basis. - Abstract: We present a progress report on the development of the Belgrade electron/molecule data base which is hosted by The Institute of Physics, University of Belgrade and The Astronomical Observatory Belgrade. The data base has been developed under the standards of Virtual Atomic Molecular Data Centre (VAMDC) project which provides a common portal for several European data bases that maintain atomic and molecular data. The Belgrade data base (BEAMDB) covers collisional data of electron interactions with atoms and molecules in the form of differential (DCS) and integrated cross sections as well as energy loss spectra. The final goal of BEAMDB becoming both a node within the VAMDC consortium and within the radiation damage RADAM data base has been achieved.

  18. Atom counting in HAADF STEM using a statistical model-based approach: methodology, possibilities, and inherent limitations.

    Science.gov (United States)

    De Backer, A; Martinez, G T; Rosenauer, A; Van Aert, S

    2013-11-01

    In the present paper, a statistical model-based method to count the number of atoms of monotype crystalline nanostructures from high resolution high-angle annular dark-field (HAADF) scanning transmission electron microscopy (STEM) images is discussed in detail together with a thorough study on the possibilities and inherent limitations. In order to count the number of atoms, it is assumed that the total scattered intensity scales with the number of atoms per atom column. These intensities are quantitatively determined using model-based statistical parameter estimation theory. The distribution describing the probability that intensity values are generated by atomic columns containing a specific number of atoms is inferred on the basis of the experimental scattered intensities. Finally, the number of atoms per atom column is quantified using this estimated probability distribution. The number of atom columns available in the observed STEM image, the number of components in the estimated probability distribution, the width of the components of the probability distribution, and the typical shape of a criterion to assess the number of components in the probability distribution directly affect the accuracy and precision with which the number of atoms in a particular atom column can be estimated. It is shown that single atom sensitivity is feasible taking the latter aspects into consideration. © 2013 Elsevier B.V. All rights reserved.

  19. Maximum-Likelihood Estimator of Clock Offset between Nanomachines in Bionanosensor Networks

    Directory of Open Access Journals (Sweden)

    Lin Lin

    2015-12-01

    Full Text Available Recent advances in nanotechnology, electronic technology and biology have enabled the development of bio-inspired nanoscale sensors. The cooperation among the bionanosensors in a network is envisioned to perform complex tasks. Clock synchronization is essential to establish diffusion-based distributed cooperation in the bionanosensor networks. This paper proposes a maximum-likelihood estimator of the clock offset for the clock synchronization among molecular bionanosensors. The unique properties of diffusion-based molecular communication are described. Based on the inverse Gaussian distribution of the molecular propagation delay, a two-way message exchange mechanism for clock synchronization is proposed. The maximum-likelihood estimator of the clock offset is derived. The convergence and the bias of the estimator are analyzed. The simulation results show that the proposed estimator is effective for the offset compensation required for clock synchronization. This work paves the way for the cooperation of nanomachines in diffusion-based bionanosensor networks.

  20. Splitting the second the story of atomic time

    CERN Document Server

    Jones, Tony

    2000-01-01

    Until the 1950s timekeeping was based on the apparent motion of the Sun that in turn reflected the rotation of the Earth on its axis. But the Earth does not turn smoothly. By the 1940s it was clear that the length of the day fluctuated unpredictably and with it the length of the second. Astronomers wanted to redefine the second in terms of the motions of the Moon and the planets. Physicists wanted to dispense with astronomical time altogether and define the second in terms of the fundamental properties of atoms. The physicists won. The revolution began in June 1955 with the operation of the first successful atomic clock and was complete by October 1967 when the atomic second ousted the astronomical second as the international unit of time. Splitting the Second: The Story of Atomic Time presents the story of this revolution, explaining how atomic clocks work, how more than 200 of them are used to form the world's time, and why we need leap seconds. The book illustrates how accurate time is distributed around...

  1. Innovation and reliability of atomic standards for PTTI applications

    Science.gov (United States)

    Kern, R.

    1981-01-01

    Innovation and reliability in hyperfine frequency standards and clock systems are discussed. Hyperfine standards are defined as those precision frequency sources and clocks which use a hyperfine atomic transition for frequency control and which have realized significant commercial production and acceptance (cesium, hydrogen, and rubidium atoms). References to other systems such as thallium and ammonia are excluded since these atomic standards have not been commercially exploited in this country.

  2. Einstein's Clocks and Langevin's Twins

    CERN Document Server

    Weinstein, Galina

    2012-01-01

    In 1905 Einstein presented the Clock Paradox and in 1911 Paul Langevin expanded Einstein's result to human observers, the "Twin Paradox." I will explain the crucial difference between Einstein and Langevin. Einstein did not present the so-called "Twin Paradox." Later Einstein continued to speak about the clock paradox. Einstein might not have been interested in the question: what happens to the observers themselves. The reason for this could be the following; Einstein dealt with measurement procedures, clocks and measuring rods. Einstein's observers were measuring time with these clocks and measuring rods. Einstein might not have been interested in so-called biology of the observers, whether these observers were getting older, younger, or whether they have gone any other changes; these changes appeared to be out of the scope of his "Principle of relativity" or kinematics. The processes and changes occurring within observers seemed to be good for philosophical discussions. Later writers criticized Einstein's c...

  3. Determination of Trace Elements in Nickel Base Gas Turbine Parts by Atomic Absorption Spectrophotometry.

    Science.gov (United States)

    An investigation is described to ascertain whether or not atomic absorption spectrophotometry could be used to determine the concentration of trace ... elements such as silver (Ag), bismuth (Bi), cadmium (Cd), and lead (Pb) in nickel base alloys such as IN100, B1900 and 713C, without interference from

  4. Biological clocks in theory and experiments

    OpenAIRE

    Millar Andrew J

    2005-01-01

    Eukaryotes and some prokaryotes have adapted to the 24 h day/night cycle by evolving circadian clocks. The circadian clock now controls 24-hour rhythms in very many aspects of metabolism, physiology and behaviour. Day-length (photoperiod) measurement depends on the circadian clock, so the 24 h clock mechanism also governs seasonal rhythms, such as reproduction. In the model plant species, Arabidopsis thaliana, the clock controls the expression of about 10% of genes, and this proportion is sim...

  5. Analysis list: Clock [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Clock Liver + mm9 http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/target/Clock.1.tsv... http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/target/Clock.5.tsv http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/target/Clock....10.tsv http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/colo/Clock.Liver.tsv http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/colo/Liver.gml ...

  6. C-C Coupling on Single-Atom-Based Heterogeneous Catalyst.

    Science.gov (United States)

    Zhang, Xiaoyan; Sun, Zaicheng; Wang, Bin; Tang, Yu; Nguyen, Luan; Li, Yuting; Tao, Franklin Feng

    2018-01-24

    Compared to homogeneous catalysis, heterogeneous catalysis allows for ready separation of products from the catalyst and thus reuse of the catalyst. C-C coupling is typically performed on a molecular catalyst which is mixed with reactants in liquid phase during catalysis. This homogeneous mixing at a molecular level in the same phase makes separation of the molecular catalyst extremely challenging and costly. Here we demonstrated that a TiO 2 -based nanoparticle catalyst anchoring singly dispersed Pd atoms (Pd 1 /TiO 2 ) is selective and highly active for more than 10 Sonogashira C-C coupling reactions (R≡CH + R'X → R≡R'; X = Br, I; R' = aryl or vinyl). The coupling between iodobenzene and phenylacetylene on Pd 1 /TiO 2 exhibits a turnover rate of 51.0 diphenylacetylene molecules per anchored Pd atom per minute at 60 °C, with a low apparent activation barrier of 28.9 kJ/mol and no cost of catalyst separation. DFT calculations suggest that the single Pd atom bonded to surface lattice oxygen atoms of TiO 2 acts as a site to dissociatively chemisorb iodobenzene to generate an intermediate phenyl, which then couples with phenylacetylenyl bound to a surface oxygen atom. This coupling of phenyl adsorbed on Pd 1 and phenylacetylenyl bound to O ad of TiO 2 forms the product molecule, diphenylacetylene.

  7. A Polarizable Atomic Multipole-Based Force Field for Molecular Dynamics Simulations of Anionic Lipids.

    Science.gov (United States)

    Chu, Huiying; Peng, Xiangda; Li, Yan; Zhang, Yuebin; Li, Guohui

    2017-12-31

    In all of the classical force fields, electrostatic interaction is simply treated and explicit electronic polarizability is neglected. The condensed-phase polarization, relative to the gas-phase charge distributions, is commonly accounted for in an average way by increasing the atomic charges, which remain fixed throughout simulations. Based on the lipid polarizable force field DMPC and following the same framework as Atomic Multipole Optimized Energetics for BiomoleculAr (AMOEBA) simulation, the present effort expands the force field to new anionic lipid models, in which the new lipids contain DMPG and POPS. The parameters are compatible with the AMOEBA force field, which includes water, ions, proteins, etc. The charge distribution of each atom is represented by the permanent atomic monopole, dipole and quadrupole moments, which are derived from the ab initio gas phase calculations. Many-body polarization including the inter- and intramolecular polarization is modeled in a consistent manner with distributed atomic polarizabilities. Molecular dynamics simulations of the two aqueous DMPG and POPS membrane bilayer systems, consisting of 72 lipids with water molecules, were then carried out to validate the force field parameters. Membrane width, area per lipid, volume per lipid, deuterium order parameters, electron density profile, electrostatic potential difference between the center of the bilayer and water are all calculated, and compared with limited experimental data.

  8. Laser Cooling, Trapping, and Bose-Einstein Condensation of Atoms and Molecules

    Science.gov (United States)

    Leduc, Michèle; Dugué, Julien; Simonet, Juliette

    2009-04-01

    In this paper we first focus on the methods developed to control the position and the velocity of atoms, taking advantage of the radiative forces exerted on atoms placed in a laser beam. Temperatures in the range of μK can be reached for dilute atomic clouds trapped under vacuum in a very small region of space. The application to fountain clocks based on cold cesium atoms is presented. We then describe the characterization and the main features of Bose-Einstein condensates, a new state of matter of purely quantum origin, which can be obtained by subsequent evaporative cooling. The methods in use for cooling molecules are considered, in particular the collision processes or the photoassociation of cold atoms. The possibility of changing interactions between ultracold particles is also explained and photoassociation is illustrated by the recent experiments of our group dealing with metastable helium atoms.

  9. Hybrid statistics-simulations based method for atom-counting from ADF STEM images.

    Science.gov (United States)

    De Wael, Annelies; De Backer, Annick; Jones, Lewys; Nellist, Peter D; Van Aert, Sandra

    2017-06-01

    A hybrid statistics-simulations based method for atom-counting from annular dark field scanning transmission electron microscopy (ADF STEM) images of monotype crystalline nanostructures is presented. Different atom-counting methods already exist for model-like systems. However, the increasing relevance of radiation damage in the study of nanostructures demands a method that allows atom-counting from low dose images with a low signal-to-noise ratio. Therefore, the hybrid method directly includes prior knowledge from image simulations into the existing statistics-based method for atom-counting, and accounts in this manner for possible discrepancies between actual and simulated experimental conditions. It is shown by means of simulations and experiments that this hybrid method outperforms the statistics-based method, especially for low electron doses and small nanoparticles. The analysis of a simulated low dose image of a small nanoparticle suggests that this method allows for far more reliable quantitative analysis of beam-sensitive materials. Copyright © 2017 Elsevier B.V. All rights reserved.

  10. Speckle reduction in optical coherence tomography images based on wave atoms

    Science.gov (United States)

    Du, Yongzhao; Liu, Gangjun; Feng, Guoying; Chen, Zhongping

    2014-01-01

    Abstract. Optical coherence tomography (OCT) is an emerging noninvasive imaging technique, which is based on low-coherence interferometry. OCT images suffer from speckle noise, which reduces image contrast. A shrinkage filter based on wave atoms transform is proposed for speckle reduction in OCT images. Wave atoms transform is a new multiscale geometric analysis tool that offers sparser expansion and better representation for images containing oscillatory patterns and textures than other traditional transforms, such as wavelet and curvelet transforms. Cycle spinning-based technology is introduced to avoid visual artifacts, such as Gibbs-like phenomenon, and to develop a translation invariant wave atoms denoising scheme. The speckle suppression degree in the denoised images is controlled by an adjustable parameter that determines the threshold in the wave atoms domain. The experimental results show that the proposed method can effectively remove the speckle noise and improve the OCT image quality. The signal-to-noise ratio, contrast-to-noise ratio, average equivalent number of looks, and cross-correlation (XCOR) values are obtained, and the results are also compared with the wavelet and curvelet thresholding techniques. PMID:24825507

  11. Support effects on adsorption and catalytic activation of O2in single atom iron catalysts with graphene-based substrates.

    Science.gov (United States)

    Gao, Zheng-Yang; Yang, Wei-Jie; Ding, Xun-Lei; Lv, Gang; Yan, Wei-Ping

    2018-02-27

    The adsorption and catalytic activation of O 2 on single atom iron catalysts with graphene-based substrates were investigated systematically by density functional theory calculation. It is found that the support effects of graphene-based substrates have a significant influence on the stability of the single atom catalysts, the adsorption configuration, the electron transfer mechanism, the adsorption energy and the energy barrier. The differences in the stable adsorption configuration of O 2 on single atom iron catalysts with different graphene-based substrates can be well understood by the symmetrical matching principle based on frontier molecular orbital analysis. There are two different mechanisms of electron transfer, in which the Fe atom acts as the electron donor in single vacancy graphene-based substrates while the Fe atom mainly acts as the bridge for electron transfer in double vacancy graphene-based substrates. The Fermi softness and work function are good descriptors of the adsorption energy and they can well reveal the relationship between electronic structure and adsorption energy. This single atom iron catalyst with single vacancy graphene modified by three nitrogen atoms is a promising non-noble metal single atom catalyst in the adsorption and catalytic oxidation of O 2 . Furthermore, the findings can lay the foundation for the further study of graphene-based support effects and provide a guideline for the development and design of new non-noble-metal single atom catalysts.

  12. Synthetic clock transitions via continuous dynamical decoupling

    Science.gov (United States)

    Trypogeorgos, D.; Valdés-Curiel, A.; Lundblad, N.; Spielman, I. B.

    2018-01-01

    Decoherence of quantum systems due to uncontrolled fluctuations of the environment presents fundamental obstacles in quantum science. Clock transitions which are insensitive to such fluctuations are used to improve coherence, however, they are not present in all systems or for arbitrary system parameters. Here we create a trio of synthetic clock transitions using continuous dynamical decoupling in a spin-1 Bose-Einstein condensate in which we observe a reduction of sensitivity to magnetic-field noise of up to four orders of magnitude; this work complements the parallel work by Anderson et al. [R. P. Anderson et al., following paper, Phys. Rev. A 97, 013408 (2018), 10.1103/PhysRevA.97.013408]. In addition, using a concatenated scheme, we demonstrate suppression of sensitivity to fluctuations in our control fields. These field-insensitive states represent an ideal foundation for the next generation of cold-atom experiments focused on fragile many-body phases relevant to quantum magnetism, artificial gauge fields, and topological matter.

  13. Protein phosphatase 1 (PP1 is a post-translational regulator of the mammalian circadian clock.

    Directory of Open Access Journals (Sweden)

    Isabelle Schmutz

    Full Text Available Circadian clocks coordinate the timing of important biological processes. Interconnected transcriptional and post-translational feedback loops based on a set of clock genes generate and maintain these rhythms with a period of about 24 hours. Many clock proteins undergo circadian cycles of post-translational modifications. Among these modifications, protein phosphorylation plays an important role in regulating activity, stability and intracellular localization of clock components. Several protein kinases were characterized as regulators of the circadian clock. However, the function of protein phosphatases, which balance phosphorylation events, in the mammalian clock mechanism is less well understood. Here, we identify protein phosphatase 1 (PP1 as regulator of period and light-induced resetting of the mammalian circadian clock. Down-regulation of PP1 activity in cells by RNA interference and in vivo by expression of a specific inhibitor in the brain of mice tended to lengthen circadian period. Moreover, reduction of PP1 activity in the brain altered light-mediated clock resetting behavior in mice, enhancing the phase shifts in either direction. At the molecular level, diminished PP1 activity increased nuclear accumulation of the clock component PER2 in neurons. Hence, PP1, may reduce PER2 phosphorylation thereby influencing nuclear localization of this protein. This may at least partially influence period and phase shifting properties of the mammalian circadian clock.

  14. The central clock neurons regulate lipid storage in Drosophila.

    Directory of Open Access Journals (Sweden)

    Justin R DiAngelo

    Full Text Available A proper balance of lipid breakdown and synthesis is essential for achieving energy homeostasis as alterations in either of these processes can lead to pathological states such as obesity. The regulation of lipid metabolism is quite complex with multiple signals integrated to control overall triglyceride levels in metabolic tissues. Based upon studies demonstrating effects of the circadian clock on metabolism, we sought to determine if the central clock cells in the Drosophila brain contribute to lipid levels in the fat body, the main nutrient storage organ of the fly. Here, we show that altering the function of the Drosophila central clock neurons leads to an increase in fat body triglycerides. We also show that although triglyceride levels are not affected by age, they are increased by expression of the amyloid-beta protein in central clock neurons. The effect on lipid storage seems to be independent of circadian clock output as changes in triglycerides are not always observed in genetic manipulations that result in altered locomotor rhythms. These data demonstrate that the activity of the central clock neurons is necessary for proper lipid storage.

  15. Magnetization dynamics, Bennett clocking and associated energy dissipation in multiferroic logic

    Science.gov (United States)

    Salehi Fashami, Mohammad; Roy, Kuntal; Atulasimha, Jayasimha; Bandyopadhyay, Supriyo

    2011-04-01

    It has been recently shown that the magnetization of a multiferroic nanomagnet, consisting of a magnetostrictive layer elastically coupled to a piezoelectric layer, can be rotated by a large angle if a tiny voltage of a few tens of millivolts is applied to the piezoelectric layer. The potential generates stress in the magnetostrictive layer and rotates its magnetization by ~ 90° to implement Bennett clocking in nanomagnetic logic chains. Because of the small voltage needed, this clocking method is far more energy efficient than those that would employ spin transfer torque or magnetic fields to rotate the magnetization. In order to assess if such a clocking scheme can also be reasonably fast, we have studied the magnetization dynamics of a multiferroic logic chain with nearest-neighbor dipole coupling using the Landau-Lifshitz-Gilbert (LLG) equation. We find that clock rates of 2.5 GHz are feasible while still maintaining the exceptionally high energy efficiency. For this clock rate, the energy dissipated per clock cycle per bit flip is ~ 52 000 kT at room temperature in the clocking circuit for properly designed nanomagnets. Had we used spin transfer torque to clock at the same rate, the energy dissipated per clock cycle per bit flip would have been ~ 4 × 108 kT, while with current transistor technology we would have expended ~ 106 kT. For slower clock rates of 1 GHz, stress-based clocking will dissipate only ~ 200 kT of energy per clock cycle per bit flip, while spin transfer torque would dissipate about 108 kT. This shows that multiferroic nanomagnetic logic, clocked with voltage-generated stress, can emerge as a very attractive technique for computing and signal processing since it can be several orders of magnitude more energy efficient than current technologies.

  16. Magnetization dynamics, Bennett clocking and associated energy dissipation in multiferroic logic

    Energy Technology Data Exchange (ETDEWEB)

    Fashami, Mohammad Salehi; Atulasimha, Jayasimha [Department of Mechanical and Nuclear Engineering, Virginia Commonwealth University, Richmond, VA 23284 (United States); Roy, Kuntal; Bandyopadhyay, Supriyo, E-mail: jatulasimha@vcu.edu [Department of Electrical and Computer Engineering, Virginia Commonwealth University, Richmond, VA 23284 (United States)

    2011-04-15

    It has been recently shown that the magnetization of a multiferroic nanomagnet, consisting of a magnetostrictive layer elastically coupled to a piezoelectric layer, can be rotated by a large angle if a tiny voltage of a few tens of millivolts is applied to the piezoelectric layer. The potential generates stress in the magnetostrictive layer and rotates its magnetization by {approx} 90{sup 0} to implement Bennett clocking in nanomagnetic logic chains. Because of the small voltage needed, this clocking method is far more energy efficient than those that would employ spin transfer torque or magnetic fields to rotate the magnetization. In order to assess if such a clocking scheme can also be reasonably fast, we have studied the magnetization dynamics of a multiferroic logic chain with nearest-neighbor dipole coupling using the Landau-Lifshitz-Gilbert (LLG) equation. We find that clock rates of 2.5 GHz are feasible while still maintaining the exceptionally high energy efficiency. For this clock rate, the energy dissipated per clock cycle per bit flip is {approx} 52 000 kT at room temperature in the clocking circuit for properly designed nanomagnets. Had we used spin transfer torque to clock at the same rate, the energy dissipated per clock cycle per bit flip would have been {approx} 4 x 10{sup 8} kT, while with current transistor technology we would have expended {approx} 10{sup 6} kT. For slower clock rates of 1 GHz, stress-based clocking will dissipate only {approx} 200 kT of energy per clock cycle per bit flip, while spin transfer torque would dissipate about 10{sup 8} kT. This shows that multiferroic nanomagnetic logic, clocked with voltage-generated stress, can emerge as a very attractive technique for computing and signal processing since it can be several orders of magnitude more energy efficient than current technologies.

  17. Modeling the mammalian circadian clock

    Science.gov (United States)

    Jolley, Craig; Ueda, Hiroki

    2012-02-01

    In biology, important processes often depend on a temporal schedule. The 24-hour periodicity of solar illumination caused by the earth's rotation has consequences for environmental factors such as temperature and humidity as well as ecological factors such as the presence of food, predators, or potential mates. As a result, many organisms have evolved to develop a circadian clock that allows them to anticipate these environmental changes in the absence of direct temporal cues. In recent years, extensive efforts have been made to deconstruct the biological clockwork from various organisms, develop mathematical models of circadian function, and construct synthetic analogues to test our understanding. My present work has two major foci. First, we have used regulatory principles revealed by recent experimental work to construct a model of the core genetic oscillator of the mammalian circadian system that captures key system-level behaviors. Second, we are exploring the possibility of a post-translational phosphorylation-based oscillator that is coupled to the core oscillator, conferring enhanced robustness and stability on the complete system. A simple model of this post-translational oscillator reveals key design constraints that must be satisfied by any such oscillator.

  18. Rabi Spectroscopy and Excitation Inhomogeneity in a 1D Optical Lattice Clock

    OpenAIRE

    Blatt, S.; Thomsen, J. W.; Campbell, G. K.; Ludlow, A. D.; Swallows, M. D.; Martin, M. J.; Boyd, M. M.; Ye, Jun

    2009-01-01

    We investigate the influence of atomic motion on precision Rabi spectroscopy of ultracold fermionic atoms confined in a deep, one dimensional (1D) optical lattice. We analyze the spectral components of longitudinal sideband spectra and present a model to extract information about the transverse motion and sample temperature from their structure. Rabi spectroscopy of the clock transition itself is also influenced by atomic motion in the weakly confined transverse directions of the optical latt...

  19. Magnetic field modulation spectroscopy of rubidium atoms

    Indian Academy of Sciences (India)

    phase-sensitive detection of the signal, thereby paving the way for very high sensitive measurement in the parts per billion (PPB) levels [4]. On the other hand, the saturation. FMS (SFMS) can be used as a very precise frequency reference in experiments involving laser-cooled atoms, frequency standards as in atomic clock, ...

  20. Sound Clocks and Sonic Relativity

    Science.gov (United States)

    Todd, Scott L.; Menicucci, Nicolas C.

    2017-10-01

    Sound propagation within certain non-relativistic condensed matter models obeys a relativistic wave equation despite such systems admitting entirely non-relativistic descriptions. A natural question that arises upon consideration of this is, "do devices exist that will experience the relativity in these systems?" We describe a thought experiment in which `acoustic observers' possess devices called sound clocks that can be connected to form chains. Careful investigation shows that appropriately constructed chains of stationary and moving sound clocks are perceived by observers on the other chain as undergoing the relativistic phenomena of length contraction and time dilation by the Lorentz factor, γ , with c the speed of sound. Sound clocks within moving chains actually tick less frequently than stationary ones and must be separated by a shorter distance than when stationary to satisfy simultaneity conditions. Stationary sound clocks appear to be length contracted and time dilated to moving observers due to their misunderstanding of their own state of motion with respect to the laboratory. Observers restricted to using sound clocks describe a universe kinematically consistent with the theory of special relativity, despite the preferred frame of their universe in the laboratory. Such devices show promise in further probing analogue relativity models, for example in investigating phenomena that require careful consideration of the proper time elapsed for observers.

  1. Modern Focused-Ion-Beam-Based Site-Specific Specimen Preparation for Atom Probe Tomography.

    Science.gov (United States)

    Prosa, Ty J; Larson, David J

    2017-04-01

    Approximately 30 years after the first use of focused ion beam (FIB) instruments to prepare atom probe tomography specimens, this technique has grown to be used by hundreds of researchers around the world. This past decade has seen tremendous advances in atom probe applications, enabled by the continued development of FIB-based specimen preparation methodologies. In this work, we provide a short review of the origin of the FIB method and the standard methods used today for lift-out and sharpening, using the annular milling method as applied to atom probe tomography specimens. Key steps for enabling correlative analysis with transmission electron-beam backscatter diffraction, transmission electron microscopy, and atom probe tomography are presented, and strategies for preparing specimens for modern microelectronic device structures are reviewed and discussed in detail. Examples are used for discussion of the steps for each of these methods. We conclude with examples of the challenges presented by complex topologies such as nanowires, nanoparticles, and organic materials.

  2. Lattice and strain analysis of atomic resolution Z-contrast images based on template matching

    Energy Technology Data Exchange (ETDEWEB)

    Zuo, Jian-Min, E-mail: jianzuo@uiuc.edu [Department of Materials Science and Engineering, University of Illinois, Urbana, IL 61801 (United States); Seitz Materials Research Laboratory, University of Illinois, Urbana, IL 61801 (United States); Shah, Amish B. [Center for Microanalysis of Materials, Materials Research Laboratory, University of Illinois at Urbana-Champaign, Urbana, IL 61801 (United States); Kim, Honggyu; Meng, Yifei; Gao, Wenpei [Department of Materials Science and Engineering, University of Illinois, Urbana, IL 61801 (United States); Seitz Materials Research Laboratory, University of Illinois, Urbana, IL 61801 (United States); Rouviére, Jean-Luc [CEA-INAC/UJF-Grenoble UMR-E, SP2M, LEMMA, Minatec, Grenoble 38054 (France)

    2014-01-15

    A real space approach is developed based on template matching for quantitative lattice analysis using atomic resolution Z-contrast images. The method, called TeMA, uses the template of an atomic column, or a group of atomic columns, to transform the image into a lattice of correlation peaks. This is helped by using a local intensity adjusted correlation and by the design of templates. Lattice analysis is performed on the correlation peaks. A reference lattice is used to correct for scan noise and scan distortions in the recorded images. Using these methods, we demonstrate that a precision of few picometers is achievable in lattice measurement using aberration corrected Z-contrast images. For application, we apply the methods to strain analysis of a molecular beam epitaxy (MBE) grown LaMnO{sub 3} and SrMnO{sub 3} superlattice. The results show alternating epitaxial strain inside the superlattice and its variations across interfaces at the spatial resolution of a single perovskite unit cell. Our methods are general, model free and provide high spatial resolution for lattice analysis. - Highlights: • A real space approach is developed for strain analysis using atomic resolution Z-contrast images and template matching. • A precision of few picometers is achievable in the measurement of lattice displacements. • The spatial resolution of a single perovskite unit cell is demonstrated for a LaMnO{sub 3} and SrMnO{sub 3} superlattice grown by MBE.

  3. Absolute number densities of helium metastable atoms determined by atomic absorption spectroscopy in helium plasma-based discharges used as ambient desorption/ionization sources for mass spectrometry

    Energy Technology Data Exchange (ETDEWEB)

    Reininger, Charlotte; Woodfield, Kellie [Brigham Young University, Department of Chemistry and Biochemistry, Provo, UT 84602 (United States); Keelor, Joel D.; Kaylor, Adam; Fernández, Facundo M. [Georgia Institute of Technology, School of Chemistry and Biochemistry, Atlanta, GA 30332 (United States); Farnsworth, Paul B., E-mail: paul_farnsworth@byu.edu [Brigham Young University, Department of Chemistry and Biochemistry, Provo, UT 84602 (United States)

    2014-10-01

    The absolute number densities of helium atoms in the 2s {sup 3}S{sub 1} metastable state were determined in four plasma-based ambient desorption/ionization sources by atomic absorption spectroscopy. The plasmas included a high-frequency dielectric barrier discharge (HF-DBD), a low temperature plasma (LTP), and two atmospheric-pressure glow discharges, one with AC excitation and the other with DC excitation. Peak densities in the luminous plumes downstream from the discharge capillaries of the HF-DBD and the LTP were 1.39 × 10{sup 12} cm{sup −3} and 0.011 × 10{sup 12} cm{sup −3}, respectively. Neither glow discharge produced a visible afterglow, and no metastable atoms were detected downstream from the capillary exits. However, densities of 0.58 × 10{sup 12} cm{sup −3} and 0.97 × 10{sup 12} cm{sup −3} were measured in the interelectrode regions of the AC and DC glow discharges, respectively. Time-resolved measurements of metastable atom densities revealed significant random variations in the timing of pulsed absorption signals with respect to the voltage waveforms applied to the discharges. - Highlights: • We determine He metastable number densities for four plasma types • The highest number densities were observed in a dielectric barrier discharge • No helium metastable atoms were observed downstream from the exits of glow discharges.

  4. Comparing Laser Interferometry and Atom Interferometry Approaches to Space-Based Gravitational-Wave Measurement

    Science.gov (United States)

    Baker, John; Thorpe, Ira

    2012-01-01

    Thoroughly studied classic space-based gravitational-wave missions concepts such as the Laser Interferometer Space Antenna (LISA) are based on laser-interferometry techniques. Ongoing developments in atom-interferometry techniques have spurred recently proposed alternative mission concepts. These different approaches can be understood on a common footing. We present an comparative analysis of how each type of instrument responds to some of the noise sources which may limiting gravitational-wave mission concepts. Sensitivity to laser frequency instability is essentially the same for either approach. Spacecraft acceleration reference stability sensitivities are different, allowing smaller spacecraft separations in the atom interferometry approach, but acceleration noise requirements are nonetheless similar. Each approach has distinct additional measurement noise issues.

  5. Radical zinc-atom-transfer-based carbozincation of haloalkynes with dialkylzincs

    Directory of Open Access Journals (Sweden)

    Fabrice Chemla

    2013-02-01

    Full Text Available The formation of alkylidenezinc carbenoids by 1,4-addition/carbozincation of dialkylzincs or alkyl iodides based on zinc atom radical transfer, in the presence of dimethylzinc with β-(propargyloxyenoates having pendant iodo- and bromoalkynes, is disclosed. Formation of the carbenoid intermediate is fully stereoselective at −30 °C and arises from a formal anti-selective carbozincation reaction. Upon warming, the zinc carbenoid is stereochemically labile and isomerizes to its more stable form.

  6. Atom-probe tomography of tribological boundary films resulting from boron-based oil additives

    Energy Technology Data Exchange (ETDEWEB)

    Kim, Yoon-Jun; Baik, Sung-Il; Bertolucci-Coelho, Leonardo; Mazzaferro, Lucca; Ramirez, Giovanni; Erdemir, Ali; Seidman, D K

    2016-01-15

    Correlative characterization using atom-probe tomography (APT) and transmission electron microscopy (TEM) was performed on a tribofilm formed during sliding frictional testing with a fully formulated engine oil, which also contains a boron-based additive. The tribofilm formed is ~15 nm thick and consists of oxides of iron and compounds of B, Ca, P, and S, which are present in the additive. This study provides strong evidence for boron being embedded in the tribofilm, which effectively reduces friction and wear losses.

  7. AUTOMATED FORCE FIELD PARAMETERIZATION FOR NON-POLARIZABLE AND POLARIZABLE ATOMIC MODELS BASED ONAB INITIOTARGET DATA.

    Science.gov (United States)

    Huang, Lei; Roux, Benoît

    2013-08-13

    Classical molecular dynamics (MD) simulations based on atomistic models are increasingly used to study a wide range of biological systems. A prerequisite for meaningful results from such simulations is an accurate molecular mechanical force field. Most biomolecular simulations are currently based on the widely used AMBER and CHARMM force fields, which were parameterized and optimized to cover a small set of basic compounds corresponding to the natural amino acids and nucleic acid bases. Atomic models of additional compounds are commonly generated by analogy to the parameter set of a given force field. While this procedure yields models that are internally consistent, the accuracy of the resulting models can be limited. In this work, we propose a method, General Automated Atomic Model Parameterization (GAAMP), for generating automatically the parameters of atomic models of small molecules using the results from ab initio quantum mechanical (QM) calculations as target data. Force fields that were previously developed for a wide range of model compounds serve as initial guess, although any of the final parameter can be optimized. The electrostatic parameters (partial charges, polarizabilities and shielding) are optimized on the basis of QM electrostatic potential (ESP) and, if applicable, the interaction energies between the compound and water molecules. The soft dihedrals are automatically identified and parameterized by targeting QM dihedral scans as well as the energies of stable conformers. To validate the approach, the solvation free energy is calculated for more than 200 small molecules and MD simulations of 3 different proteins are carried out.

  8. Theoretical realization of cluster-assembled hydrogen storage materials based on terminated carbon atomic chains.

    Science.gov (United States)

    Liu, Chun-Sheng; An, Hui; Guo, Ling-Ju; Zeng, Zhi; Ju, Xin

    2011-01-14

    The capacity of carbon atomic chains with different terminations for hydrogen storage is studied using first-principles density functional theory calculations. Unlike the physisorption of H(2) on the H-terminated chain, we show that two Li (Na) atoms each capping one end of the odd- or even-numbered carbon chain can hold ten H(2) molecules with optimal binding energies for room temperature storage. The hybridization of the Li 2p states with the H(2)σ orbitals contributes to the H(2) adsorption. However, the binding mechanism of the H(2) molecules on Na arises only from the polarization interaction between the charged Na atom and the H(2). Interestingly, additional H(2) molecules can be bound to the carbon atoms at the chain ends due to the charge transfer between Li 2s2p (Na 3s) and C 2p states. More importantly, dimerization of these isolated metal-capped chains does not affect the hydrogen binding energy significantly. In addition, a single chain can be stabilized effectively by the C(60) fullerenes termination. With a hydrogen uptake of ∼10 wt.% on Li-coated C(60)-C(n)-C(60) (n = 5, 8), the Li(12)C(60)-C(n)-Li(12)C(60) complex, keeping the number of adsorbed H(2) molecules per Li and stabilizing the dispersion of individual Li atoms, can serve as better building blocks of polymers than the (Li(12)C(60))(2) dimer. These findings suggest a new route to design cluster-assembled hydrogen storage materials based on terminated sp carbon chains.

  9. A noise-immune cavity-assisted non-destructive detection for an optical lattice clock in the quantum regime

    Science.gov (United States)

    Vallet, G.; Bookjans, E.; Eismann, U.; Bilicki, S.; Le Targat, R.; Lodewyck, J.

    2017-08-01

    We present and implement a non-destructive detection scheme for the transition probability readout of an optical lattice clock. The scheme relies on a differential heterodyne measurement of the dispersive properties of lattice-trapped atoms enhanced by a high finesse cavity. By design, this scheme offers a 1st order rejection of the technical noise sources, an enhanced signal-to-noise ratio, and an homogeneous atom-cavity coupling. We theoretically show that this scheme is optimal with respect to the photon shot noise limit. We experimentally realise this detection scheme in an operational strontium optical lattice clock. The resolution is on the order of a few atoms with a photon scattering rate low enough to keep the atoms trapped after detection. This scheme opens the door to various different interrogations protocols, which reduce the frequency instability, including atom recycling, zero-dead time clocks with a fast repetition rate, and sub quantum projection noise frequency stability.

  10. Clock, Circadian Rhythms, and Breast Cancer

    National Research Council Canada - National Science Library

    Hill, Steven M

    2004-01-01

    .... Work involving circadian clock genes and cell cycle components suggests not only an association between the two time-keeping systems, but also regulation of the cell cycle by the circadian clock...

  11. Atom-chip-based quantum gravimetry for the precise determination of absolute gravity

    Science.gov (United States)

    Abend, Sven; Schubert, Christian; Ertmer, Wolfgang; Rasel, Ernst

    2017-04-01

    We present a novel technique for the precise measurement of absolute local gravity with a quantum gravimeter based on an atom chip. Atom interferometry utilizes the interference of matter waves interrogated by laser light to read out inertial forces. Today's generation of these devices typically operate with test mass samples, that consists of ensembles of laser cooled atoms. Their performance is limited by the velocity spread and finite-size of the test masses that impose systematic uncertainties at the level of a few μGal [1]. Rather than laser cooled atoms we employ quantum degenerate ensembles, so called Bose-Einstein condensates [2], as ultra-sensitive probes for gravity. These sources offer unique properties that will allow to overcome the current limitations in the next generation of sensors. Furthermore, atom-chip technology offers the possibility to generate Bose-Einstein condensates in a fast and reliable way. We present a lab-based prototype that uses the atom chip itself to retro-reflect the interrogation laser and thus serves as inertial reference inside the vacuum [3]. With this setup, it is possible to demonstrate all necessary steps to measure gravity, including the preparation of the source, spanning an interferometer as well as the detection of the output signal. All steps are pursued on a baseline of 1 cm right below the atom chip and to analyze relevant systematic effects. In the framework of the center of excellence geoQ a next generation device is under construction at the Institut für Quantenoptik, that will target for in-field measurements. This device will feature a state-of-the-art atom-chip source with a high-flux of ultra-cold atoms at a repetition rate of 1-2 Hz [4]. The device will be characterized in cooperation with the Müller group at the Institut für Erdmessung the sensor and finally employed in a campaign to measure the Fennoscandian uplift at the level of 1 μGal. The presented work is supported by the CRC 1227 DQ-mat, the

  12. Recent Advances in Atomic Metal Doping of Carbon-based Nanomaterials for Energy Conversion.

    Science.gov (United States)

    Bayatsarmadi, Bita; Zheng, Yao; Vasileff, Anthony; Qiao, Shi-Zhang

    2017-06-01

    Nanostructured metal-contained catalysts are one of the most widely used types of catalysts applied to facilitate some of sluggish electrochemical reactions. However, the high activity of these catalysts cannot be sustained over a variety of pH ranges. In an effort to develop highly active and stable metal-contained catalysts, various approaches have been pursued with an emphasis on metal particle size reduction and doping on carbon-based supports. These techniques enhances the metal-support interactions, originating from the chemical bonding effect between the metal dopants and carbon support and the associated interface, as well as the charge transfer between the atomic metal species and carbon framework. This provides an opportunity to tune the well-defined metal active centers and optimize their activity, selectivity and stability of this type of (electro)catalyst. Herein, recent advances in synthesis strategies, characterization and catalytic performance of single atom metal dopants on carbon-based nanomaterials are highlighted with attempts to understand the electronic structure and spatial arrangement of individual atoms as well as their interaction with the supports. Applications of these new materials in a wide range of potential electrocatalytic processes in renewable energy conversion systems are also discussed with emphasis on future directions in this active field of research. © 2017 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  13. Coherent and dynamic beam splitting based on light storage in cold atoms.

    Science.gov (United States)

    Park, Kwang-Kyoon; Zhao, Tian-Ming; Lee, Jong-Chan; Chough, Young-Tak; Kim, Yoon-Ho

    2016-09-28

    We demonstrate a coherent and dynamic beam splitter based on light storage in cold atoms. An input weak laser pulse is first stored in a cold atom ensemble via electromagnetically-induced transparency (EIT). A set of counter-propagating control fields, applied at a later time, retrieves the stored pulse into two output spatial modes. The high visibility interference between the two output pulses clearly demonstrates that the beam splitting process is coherent. Furthermore, by manipulating the control lasers, it is possible to dynamically control the storage time, the power splitting ratio, the relative phase, and the optical frequencies of the output pulses. With further improvements, the active beam splitter demonstrated in this work might have applications in photonic photonic quantum information and in all-optical information processing.

  14. Double-negative acoustic metamaterial based on hollow steel tube meta-atom

    CERN Document Server

    Chen, Huaijun; Ding, Changlin; Luo, Chunrong; Zhao, Xiaopeng

    2012-01-01

    We presented an acoustic 'meta-atom' model of hollow steel tube (HST). The simulated and experimental results demonstrated that the resonant frequency is closely related to the length of the HST. Based on the HST model, we fabricated a two-dimensional (2D) acoustic metamaterial (AM) with negative effective mass density, which put up the transmission dip and accompanied inverse phase in experiment. By coupling the HST with split hollow sphere (SHS), another kind of 'meta-atom' with negative effective modulus in the layered sponge matrix, a three-dimensional (3D) AM was fabricated with simultaneously negative modulus and negative mass density. From the experiment, it is shown that the transmission peak similar to the electromagnetic metamaterials exhibited in the double-negative region of the AM. We also demonstrated that this kind of doble-negative AM can faithfully distinguish the acoustic sub-wavelength details ({\\lambda}/7) at the resonance frequency of 1630Hz.

  15. Autonomous Rubidium Clock Weak Frequency Jump Detector for Onboard Navigation Satellite System.

    Science.gov (United States)

    Khare, Akshay; Arora, Rajat; Banik, Alak; Mehta, Sanjay D

    2016-02-01

    Frequency jumps are common in rubidium frequency sources. They affect the estimation of user position in navigational satellite systems. These jumps must be detected and corrected immediately as they have direct impact on the navigation system integrity. A novel weak frequency jump detector is proposed based on a Kalman filter with a multi-interval approach. This detector can be applied for both "sudden" and "slow" frequency transitions. In this detection method, noises of clock data are reduced by Kalman filtering, for accurate estimation of jump size with less latency. Analysis on in-orbit rubidium atomic frequency standard (RAFS) phase telemetry data shows that the detector can be used for fast detection and correction of weak frequency jumps. Furthermore, performance comparison of different existing frequency jump detection techniques with the proposed detector is discussed. A multialgorithm-based strategy is proposed depending on the jump size and latency for onboard navigation satellites having RAFS as the primary frequency source.

  16. Recovery of the Earth's Gravity Field Based on Spaceborne Atom-interferometry and Its Accuracy Estimation

    Directory of Open Access Journals (Sweden)

    ZHU Zhu

    2017-09-01

    Full Text Available The electrostatic gravity gradiometer has been successfully applied as a core sensor in satellite gravity gradiometric mission GOCE, and its observations are used to recover the Earth's static gravity field with a degree and order above 200. The lifetime of GOCE has been over, and the next generation satellite gravity gradiometry with higher resolution is urgently required in order to recover the global steady-state gravity field with a degree and order of 200~360. High potential precision can be obtained in space by atom-interferometry gravity gradiometer due to its long interference time, and thus the atom-interferometry-based satellite gravity gradiometry has been proposed as one of the candidate techniques for the next satellite gravity gradiometric mission. In order to achieve the science goal for high resolution gravity field measurement in the future, a feasible scheme of atom-interferometry gravity gradiometry in micro-gravity environment is given in this paper, and the gravity gradient measurement can be achieved with a noise of 0.85mE/Hz1/2. Comparison and estimation of the Earth's gravity field recovery precision for different types of satellite gravity gradiometry is discussed, and the results show that the satellite gravity gradiometry based on atom-interferometry is expected to provide the global gravity field model with an improved accuracy of 7~8cm in terms of geoid height and 3×10-5 m/s2 in terms of gravity anomaly respectively at a degree and order of 252~290.

  17. Multilevel Atomic Coherent States and Atomic Holomorphic Representation

    Science.gov (United States)

    Cao, Chang-Qi; Haake, Fritz

    1996-01-01

    The notion of atomic coherent states is extended to the case of multilevel atom collective. Based on atomic coherent states, a holomorphic representation for atom collective states and operators is defined. An example is given to illustrate its application.

  18. Light and the human circadian clock

    NARCIS (Netherlands)

    Roenneberg, Till; Kantermann, Thomas; Juda, Myriam; Vetter, Céline; Allebrandt, Karla V

    2013-01-01

    The circadian clock can only reliably fulfil its function if it is stably entrained. Most clocks use the light-dark cycle as environmental signal (zeitgeber) for this active synchronisation. How we think about clock function and entrainment has been strongly influenced by the early concepts of the

  19. Ultrafast, laser-based, x-ray science: the dawn of atomic-scale cinematography

    Energy Technology Data Exchange (ETDEWEB)

    Barty, C.P.J. [University of California, Department of Applied Mechanics and Engineering Science, Urey Hall, Mali Code 0339, San Diego, La Jolla, CA (United States)

    2000-03-01

    The characteristics of ultrafast chirped pulse amplification systems are reviewed. Application of ultrafast chirped pulse amplification to the generation of femtosecond, incoherent, 8-keV line radiation is outlined and the use of femtosecond laser-based, x-rays for novel time-resolved diffraction studies of crystalline dynamics with sub-picosecond temporal resolution and sub-picometer spatial resolution is reviewed in detail. Possible extensions of laser-based, x-ray technology and evaluation of alternative x-ray approaches for time-resolved studies of the atomic scale dynamics are given. (author)

  20. Building a multi-walled carbon nanotube-based mass sensor with the atomic force microscope

    DEFF Research Database (Denmark)

    Mateiu, Ramona Valentina; Kuhle, A.; Marie, Rodolphe Charly Willy

    2005-01-01

    are used. The gold substrate is first covered with hydrophobic thiol molecules: octadecanthiol. The octadecanthiol molecules are then selectively removed from small areas by nanoshaving the gold substrate with the tip of an atomic force microscope (AFM) operating in contact mode. Hydrophilic thiols (2......We report an approach for building a mass sensor based on multi-walled carbon nanotubes (MWCNT). We propose a method with a great potential for the positioning of MWCNTs based on self-assembly onto patterned hydrophilic areas. For the experiments ultra flat mica substrates covered with gold...

  1. Metallic nanoparticle-based strain sensors elaborated by atomic layer deposition

    Science.gov (United States)

    Puyoo, E.; Malhaire, C.; Thomas, D.; Rafaël, R.; R'Mili, M.; Malchère, A.; Roiban, L.; Koneti, S.; Bugnet, M.; Sabac, A.; Le Berre, M.

    2017-03-01

    Platinum nanoparticle-based strain gauges are elaborated by means of atomic layer deposition on flexible polyimide substrates. Their electro-mechanical response is tested under mechanical bending in both buckling and conformational contact configurations. A maximum gauge factor of 70 is reached at a strain level of 0.5%. Although the exponential dependence of the gauge resistance on strain is attributed to the tunneling effect, it is shown that the majority of the junctions between adjacent Pt nanoparticles are in a short circuit state. Finally, we demonstrate the feasibility of an all-plastic pressure sensor integrating Pt nanoparticle-based strain gauges in a Wheatstone bridge configuration.

  2. Analysis of the Precision of Pulsar Time Clock Model

    Science.gov (United States)

    Zhao, C. S.; Tong, M. L.; Gao, Y. P.; Yang, T. G.

    2017-05-01

    Millisecond pulsars have high rotation stability, which can be applied to many research fields, such as the establishment of the pulsar time standard, detection of gravitational wave, spacecraft navigation by using X-ray pulsars and so on. In this paper, we employ two millisecond pulsars PSR J0437-4715 and J1713+0743 which are observed by International Pulsar Timing Array (IPTA), to analyze the precision of pulsar clock parameter and the prediction accuracy of pulse time of arrival (TOA). It is found that the uncertainty of spin frequency is 10-15 Hz, the uncertainty of the first derivative of spin frequency is 10-23 s-2, and the precision of measured rotational parameters increases by one order of magnitude with the accumulated observational data every 4-5 years. In addition, the errors of 4.8 yr TOAs which are predicted by the clock model established by the 10 yr data of J0437-4715 are less than 1 μs. Therefore, one can use the pulsar time standard to calibrate the atomic clock, which can make atomic time deviate from TT (Terrestrial Time) less than 1 μs within 4.8 yr.

  3. Brain-specific rescue of Clock reveals system-driven transcriptional rhythms in peripheral tissue.

    Science.gov (United States)

    Hughes, Michael E; Hong, Hee-Kyung; Chong, Jason L; Indacochea, Alejandra A; Lee, Samuel S; Han, Michael; Takahashi, Joseph S; Hogenesch, John B

    2012-01-01

    The circadian regulatory network is organized in a hierarchical fashion, with a central oscillator in the suprachiasmatic nuclei (SCN) orchestrating circadian oscillations in peripheral tissues. The nature of the relationship between central and peripheral oscillators, however, is poorly understood. We used the tetOFF expression system to specifically restore Clock function in the brains of Clock(Δ19) mice, which have compromised circadian clocks. Rescued mice showed normal locomotor rhythms in constant darkness, with activity period lengths approximating wildtype controls. We used microarray analysis to assess whether brain-specific rescue of circadian rhythmicity was sufficient to restore circadian transcriptional output in the liver. Compared to Clock mutants, Clock-rescue mice showed significantly larger numbers of cycling transcripts with appropriate phase and period lengths, including many components of the core circadian oscillator. This indicates that the SCN oscillator overcomes local circadian defects and signals directly to the molecular clock. Interestingly, the vast majority of core clock genes in liver were responsive to Clock expression in the SCN, suggesting that core clock genes in peripheral tissues are intrinsically sensitive to SCN cues. Nevertheless, most circadian output in the liver was absent or severely low-amplitude in Clock-rescue animals, demonstrating that the majority of peripheral transcriptional rhythms depend on a fully functional local circadian oscillator. We identified several new system-driven rhythmic genes in the liver, including Alas1 and Mfsd2. Finally, we show that 12-hour transcriptional rhythms (i.e., circadian "harmonics") are disrupted by Clock loss-of-function. Brain-specific rescue of Clock converted 12-hour rhythms into 24-hour rhythms, suggesting that signaling via the central circadian oscillator is required to generate one of the two daily peaks of expression. Based on these data, we conclude that 12-hour rhythms

  4. Brain-specific rescue of Clock reveals system-driven transcriptional rhythms in peripheral tissue.

    Directory of Open Access Journals (Sweden)

    Michael E Hughes

    Full Text Available The circadian regulatory network is organized in a hierarchical fashion, with a central oscillator in the suprachiasmatic nuclei (SCN orchestrating circadian oscillations in peripheral tissues. The nature of the relationship between central and peripheral oscillators, however, is poorly understood. We used the tetOFF expression system to specifically restore Clock function in the brains of Clock(Δ19 mice, which have compromised circadian clocks. Rescued mice showed normal locomotor rhythms in constant darkness, with activity period lengths approximating wildtype controls. We used microarray analysis to assess whether brain-specific rescue of circadian rhythmicity was sufficient to restore circadian transcriptional output in the liver. Compared to Clock mutants, Clock-rescue mice showed significantly larger numbers of cycling transcripts with appropriate phase and period lengths, including many components of the core circadian oscillator. This indicates that the SCN oscillator overcomes local circadian defects and signals directly to the molecular clock. Interestingly, the vast majority of core clock genes in liver were responsive to Clock expression in the SCN, suggesting that core clock genes in peripheral tissues are intrinsically sensitive to SCN cues. Nevertheless, most circadian output in the liver was absent or severely low-amplitude in Clock-rescue animals, demonstrating that the majority of peripheral transcriptional rhythms depend on a fully functional local circadian oscillator. We identified several new system-driven rhythmic genes in the liver, including Alas1 and Mfsd2. Finally, we show that 12-hour transcriptional rhythms (i.e., circadian "harmonics" are disrupted by Clock loss-of-function. Brain-specific rescue of Clock converted 12-hour rhythms into 24-hour rhythms, suggesting that signaling via the central circadian oscillator is required to generate one of the two daily peaks of expression. Based on these data, we conclude

  5. From a network of computed reaction enthalpies to atom-based thermochemistry (NEAT).

    Science.gov (United States)

    Császár, Attila G; Furtenbacher, Tibor

    2010-04-26

    A simple and fast, weighted, linear least-squares refinement protocol and code is presented for inverting the information contained in a network of quantum chemically computed 0 K reaction enthalpies. This inversion yields internally consistent 0 K enthalpies of formation for the species of the network. The refinement takes advantage of the fact that the accuracy of computed enthalpies depends strongly on the quantum-chemical protocol employed for their determination. Different protocols suffer from different sources of error; thus, the reaction enthalpies computed by them have "random" residual errors. Since it is much more natural for quantum-chemical energy and enthalpy results, including reaction enthalpies, to be based on the electronic ground states of the atoms and not on the historically preferred elemental states, and since these two possible protocols can be converted into each other straightforwardly, it is proposed that first-principles thermochemistry should employ the ground electronic states of atoms. In this scheme, called atom-based thermochemistry (AT), the enthalpy of formation of a gaseous compound corresponds simply to the total atomization energy of the species; it is always positive, and it reflects the bonding strength within the molecule. The inversion protocol developed and based on AT is termed NEAT, which represents the fact that the protocol proceeds from a network of computed reaction enthalpies toward atom-based thermochemistry, most directly to atom-based enthalpies of formation. After assembling a database that consisted of 361 ab initio reactions and reaction enthalpies involving 188 species, collected from 31 literature sources, the following dependable 0 K atom-based enthalpies of formation, Delta(f)${H{{{\\rm AT}\\hfill \\atop 0\\hfill}}}$, all in kJ mol(-1), have been obtained by means of NEAT: H(2)=432.07(0), CH=334.61(15), NH=327.69(25), OH=425.93(21), HF=566.13(31), CO=1072.08(28), O(2)=493.51(34), CH(2)=752.40(21), H(2)O

  6. Biological clocks: riding the tides.

    Science.gov (United States)

    de la Iglesia, Horacio O; Johnson, Carl Hirschie

    2013-10-21

    Animals with habitats in the intertidal zone often display biological rhythms that coordinate with both the tidal and the daily environmental cycles. Two recent studies show that the molecular components of the biological clocks mediating tidal rhythms are likely different from the phylogenetically conserved components that mediate circadian (daily) rhythms. Copyright © 2013 Elsevier Ltd. All rights reserved.

  7. <=ryptochromes and Biological Clocks -36 ...

    Indian Academy of Sciences (India)

    eyes (reptiles), pineal gland and deep brain photoreceptors. In mammals, all existing evidence indicates that photoreceptors. Figure 1. The anatomy of for both vision and the circadian clock are located in the eye. vision. A. Section through eye showing the location of light sensitive layer, the retina. B. The histological.

  8. Spin-exchange frequency shift in a cesium atomic fountain

    NARCIS (Netherlands)

    Tiesinga, E.; Verhaar, B.J.; Stoof, H.T.C.; Bragt, D. van

    1992-01-01

    In connection with experiments aiming at the improvement of the cesium atomic beam clock by means of a fountain of laser-cooled cesium atoms, we present expressions for the line shift and line broadening due to collisions between cesium atoms. The coherent collision cross sections occurring in these

  9. Morphological and structural study of gas atomized Zr-Cu-based glass-forming alloys

    Energy Technology Data Exchange (ETDEWEB)

    Zambon, A.; Badan, B

    2004-07-15

    Zr-Cu-based glass-forming alloys were processed in a laboratory scale gas atomizer, operated in sonic conditions with nitrogen or helium as the atomizing medium. Powders of rather wide size distributions were obtained, in the under 212 {mu}m range, which afforded to carry out comparative phase analyses on particles which underwent quite different cooling conditions. X-ray diffraction examinations as well as light microscopy, transmission electron microscopy, differential thermal analysis (DTA) and microhardness determinations were used to investigate the powders belonging to different size ranges. Amorphous, partially crystalline and fully crystalline powders were obtained from each atomization batch. Light microscopy afforded to evaluate the morphometric details such as the secondary dendrite arm spacing in the crystalline particles, which were correlated with the estimated cooling rates computed by means of a simplified computer code. X-ray diffraction, TEM examinations and electron diffraction confirmed that conditions were established for the development of amorphous or nanocrystalline particles, in particular in the 'under 38 {mu}m' and in the 38-45 {mu}m size ranges. Microhardness determinations showed an extremely high hardness, of the order of 1000-1100 HV{sub 0.05} in the case of fully amorphous particles, which could be encountered mainly in the smaller size ranges, while in the case of crystalline powders the hardness was around a half of such value mainly in the larger, fully crystalline ones.

  10. Optimized distance-dependent atom-pair-based potential DOOP for protein structure prediction.

    Science.gov (United States)

    Chae, Myong-Ho; Krull, Florian; Knapp, Ernst-Walter

    2015-05-01

    The DOcking decoy-based Optimized Potential (DOOP) energy function for protein structure prediction is based on empirical distance-dependent atom-pair interactions. To optimize the atom-pair interactions, native protein structures are decomposed into polypeptide chain segments that correspond to structural motives involving complete secondary structure elements. They constitute near native ligand-receptor systems (or just pairs). Thus, a total of 8609 ligand-receptor systems were prepared from 954 selected proteins. For each of these hypothetical ligand-receptor systems, 1000 evenly sampled docking decoys with 0-10 Å interface root-mean-square-deviation (iRMSD) were generated with a method used before for protein-protein docking. A neural network-based optimization method was applied to derive the optimized energy parameters using these decoys so that the energy function mimics the funnel-like energy landscape for the interaction between these hypothetical ligand-receptor systems. Thus, our method hierarchically models the overall funnel-like energy landscape of native protein structures. The resulting energy function was tested on several commonly used decoy sets for native protein structure recognition and compared with other statistical potentials. In combination with a torsion potential term which describes the local conformational preference, the atom-pair-based potential outperforms other reported statistical energy functions in correct ranking of native protein structures for a variety of decoy sets. This is especially the case for the most challenging ROSETTA decoy set, although it does not take into account side chain orientation-dependence explicitly. The DOOP energy function for protein structure prediction, the underlying database of protein structures with hypothetical ligand-receptor systems and their decoys are freely available at http://agknapp.chemie.fu-berlin.de/doop/. © 2015 Wiley Periodicals, Inc.

  11. Gravitational Wave Detection with Single-Laser Atom Interferometers

    Science.gov (United States)

    Yu, Nan; Tinto, Massimo

    2011-01-01

    A new design for a broadband detector of gravitational radiation relies on two atom interferometers separated by a distance L. In this scheme, only one arm and one laser are used for operating the two atom interferometers. The innovation here involves the fact that the atoms in the atom interferometers are not only considered as perfect test masses, but also as highly stable clocks. Atomic coherence is intrinsically stable, and can be many orders of magnitude more stable than a laser.

  12. Atomic frequency standard relativistic Doppler shift experiment

    Science.gov (United States)

    Peters, H. E.; Reinhardt, V. S.

    1974-01-01

    An experiment has been performed to measure possible space anisotropy as it would effect the frequency of a cesium atomic beam standard clock in a laboratory on earth due to motion relative to external coordinate frames. The cesium frequency was measured as a function of orientation with respect to an atomic hydrogen maser standard. Over a period of 34 days 101 measurements were made. The results are consistent with a conclusion that no general orientation dependance attributable to spacial anisotropy was observed. It is shown that both the airplane clock results, and the null results for the atomic beam clock, are consistent with Einstein general or special relativity, or with the Lorentz transformations alone.

  13. Ultra-stable clock laser system development towards space applications.

    Science.gov (United States)

    Świerad, Dariusz; Häfner, Sebastian; Vogt, Stefan; Venon, Bertrand; Holleville, David; Bize, Sébastien; Kulosa, André; Bode, Sebastian; Singh, Yeshpal; Bongs, Kai; Rasel, Ernst Maria; Lodewyck, Jérôme; Le Targat, Rodolphe; Lisdat, Christian; Sterr, Uwe

    2016-09-26

    The increasing performance of optical lattice clocks has made them attractive for scientific applications in space and thus has pushed the development of their components including the interrogation lasers of the clock transitions towards being suitable for space, which amongst others requires making them more power efficient, radiation hardened, smaller, lighter as well as more mechanically stable. Here we present the development towards a space-compatible interrogation laser system for a strontium lattice clock constructed within the Space Optical Clock (SOC2) project where we have concentrated on mechanical rigidity and size. The laser reaches a fractional frequency instability of 7.9 × 10-16 at 300 ms averaging time. The laser system uses a single extended cavity diode laser that gives enough power for interrogating the atoms, frequency comparison by a frequency comb and diagnostics. It includes fibre link stabilisation to the atomic package and to the comb. The optics module containing the laser has dimensions 60 × 45 × 8 cm3; and the ultra-stable reference cavity used for frequency stabilisation with its vacuum system takes 30 × 30 × 30 cm3. The acceleration sensitivities in three orthogonal directions of the cavity are 3.6 × 10-10/g, 5.8 × 10-10/g and 3.1 × 10-10/g, where g ≈ 9.8 m/s2 is the standard gravitational acceleration.

  14. Experimental Implementation of a Model-Based Inverse Filter to Attenuate Hysteresis in an Atomic Force Microscope

    National Research Council Canada - National Science Library

    Hatch, Andrew; Smith, Ralph G; De, Tathagata

    2004-01-01

    This paper addresses the development and experimental validation of a model-based, open loop control design for mitigating the frequency-dependent effects of hysteresis in an atomic force microscope (AFM...

  15. Circadian clock, cell cycle and cancer

    Directory of Open Access Journals (Sweden)

    Cansu Özbayer

    2011-12-01

    Full Text Available There are a few rhythms of our daily lives that we are under the influence. One of them is characterized by predictable changes over a 24-hour timescale called circadian clock. This cellular clock is coordinated by the suprachiasmatic nucleus in the anterior hypothalamus. The clock consist of an autoregulatory transcription-translation feedback loop compose of four genes/proteins; BMAL1, Clock, Cyrptochrome, and Period. BMAL 1 and Clock are transcriptional factors and Period and Cyrptochrome are their targets. Period and Cyrptochrome dimerize in the cytoplasm to enter the nucleus where they inhibit Clock/BMAL activity.It has been demonstrate that circadian clock plays an important role cellular proliferation, DNA damage and repair mechanisms, checkpoints, apoptosis and cancer.

  16. Atomic scale properties of magnetic Mn-based alloys probed by emission Mössbauer spectroscopy

    CERN Multimedia

    Mn-based alloys are characterized by a wealth of properties, which are of interest both from fundamental physics point of view and particularly attractive for different applications in modern technology: from magnetic storage to sensing and spin-based electronics. The possibility to tune their magnetic properties through post-growth thermal processes and/or stoichiometry engineering is highly important in order to target different applications (i.e. Mn$_{x}$Ga) or to increase their Curie temperature above room temperature (i.e. off-stoichiometric MnSi). In this project, the Mössbauer effect will be applied at $^{57}$Fe sites following implantation of radioactive $^{57}$Mn, to probe the micro-structure and magnetism of Mn-based alloys on the atomic-scale. The proposed experimental plan is devoted to establish a direct correlation between the local structure and bulk magnetism (and other physical properties) of Mn-based alloys.

  17. Guest-cage atomic interactions in a clathrate-based phase-change material.

    Science.gov (United States)

    Loke, Desmond; Skelton, Jonathan M; Law, Leong-Tat; Wang, Wei-Jie; Li, Ming-Hua; Song, Wen-Dong; Lee, Tae-Hoon; Elliott, Stephen R

    2014-03-19

    New clathrate-based phase-change materials with cage-like structures incorporating Cs and Ba guest atoms, are reported as a means of altering crystallization and amorphization behavior by controlling 'guest-cage' interactions via intra-complex guest vibrational effects. Both a high resistance to spontaneous crystallization, and long retention of the amorphous phase are achieved, as well as a low melting energy. This approach provides a route for achieving cage-controlled semiconductor devices. © 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  18. Athermalization in atomic force microscope based force spectroscopy using matched microstructure coupling.

    Science.gov (United States)

    Torun, H; Finkler, O; Degertekin, F L

    2009-07-01

    The authors describe a method for athermalization in atomic force microscope (AFM) based force spectroscopy applications using microstructures that thermomechanically match the AFM probes. The method uses a setup where the AFM probe is coupled with the matched structure and the displacements of both structures are read out simultaneously. The matched structure displaces with the AFM probe as temperature changes, thus the force applied to the sample can be kept constant without the need for a separate feedback loop for thermal drift compensation, and the differential signal can be used to cancel the shift in zero-force level of the AFM.

  19. Atomic force microscopy based nanoindentation study of onion abaxial epidermis walls in aqueous environment

    Energy Technology Data Exchange (ETDEWEB)

    Xi, Xiaoning; Tittmann, Bernhard [Department of Engineering Science and Mechanics, Pennsylvania State University, University Park, Pennsylvania 16802 (United States); Kim, Seong H. [Department of Chemical Engineering, Pennsylvania State University, University Park, Pennsylvania 16802 (United States)

    2015-01-14

    An atomic force microscopy based nanoindentation method was employed to study how the structure of cellulose microfibril packing and matrix polymers affect elastic modulus of fully hydrated primary plant cell walls. The isolated, single-layered abaxial epidermis cell wall of an onion bulb was used as a test system since the cellulose microfibril packing in this cell wall is known to vary systematically from inside to outside scales and the most abundant matrix polymer, pectin, can easily be altered through simple chemical treatments such as ethylenediaminetetraacetic acid and calcium ions. Experimental results showed that the pectin network variation has significant impacts on the cell wall modulus, and not the cellulose microfibril packing.

  20. Note: A microfluidic freezer based on evaporative cooling of atomized aqueous microdroplets.

    Science.gov (United States)

    Song, Jin; Chung, Minsub; Kim, Dohyun

    2015-01-01

    We report for the first time water-based evaporative cooling integrated into a microfluidic chip for temperature control and freezing of biological solution. We opt for water as a nontoxic, effective refrigerant. Aqueous solutions are atomized in our device and evaporation of microdroplets under vacuum removes heat effectively. We achieve rapid cooling (-5.1 °C/s) and a low freezing temperature (-14.1 °C). Using this approach, we demonstrate freezing of deionized water and protein solution. Our simple, yet effective cooling device may improve many microfluidic applications currently relying on external power-hungry instruments for cooling and freezing.

  1. GPS/GLONASS Combined Precise Point Positioning with Receiver Clock Modeling.

    Science.gov (United States)

    Wang, Fuhong; Chen, Xinghan; Guo, Fei

    2015-06-30

    Research has demonstrated that receiver clock modeling can reduce the correlation coefficients among the parameters of receiver clock bias, station height and zenith tropospheric delay. This paper introduces the receiver clock modeling to GPS/GLONASS combined precise point positioning (PPP), aiming to better separate the receiver clock bias and station coordinates and therefore improve positioning accuracy. Firstly, the basic mathematic models including the GPS/GLONASS observation equations, stochastic model, and receiver clock model are briefly introduced. Then datasets from several IGS stations equipped with high-stability atomic clocks are used for kinematic PPP tests. To investigate the performance of PPP, including the positioning accuracy and convergence time, a week of (1-7 January 2014) GPS/GLONASS data retrieved from these IGS stations are processed with different schemes. The results indicate that the positioning accuracy as well as convergence time can benefit from the receiver clock modeling. This is particularly pronounced for the vertical component. Statistic RMSs show that the average improvement of three-dimensional positioning accuracy reaches up to 30%-40%. Sometimes, it even reaches over 60% for specific stations. Compared to the GPS-only PPP, solutions of the GPS/GLONASS combined PPP are much better no matter if the receiver clock offsets are modeled or not, indicating that the positioning accuracy and reliability are significantly improved with the additional GLONASS satellites in the case of insufficient number of GPS satellites or poor geometry conditions. In addition to the receiver clock modeling, the impacts of different inter-system timing bias (ISB) models are investigated. For the case of a sufficient number of satellites with fairly good geometry, the PPP performances are not seriously affected by the ISB model due to the low correlation between the ISB and the other parameters. However, the refinement of ISB model weakens the

  2. Strategies for Partitioning Clock Models in Phylogenomic Dating: Application to the Angiosperm Evolutionary Timescale

    Science.gov (United States)

    Ho, Simon Y.W.

    2017-01-01

    Abstract Evolutionary timescales can be inferred from molecular sequence data using a Bayesian phylogenetic approach. In these methods, the molecular clock is often calibrated using fossil data. The uncertainty in these fossil calibrations is important because it determines the limiting posterior distribution for divergence-time estimates as the sequence length tends to infinity. Here, we investigate how the accuracy and precision of Bayesian divergence-time estimates improve with the increased clock-partitioning of genome-scale data into clock-subsets. We focus on a data set comprising plastome-scale sequences of 52 angiosperm taxa. There was little difference among the Bayesian date estimates whether we chose clock-subsets based on patterns of among-lineage rate heterogeneity or relative rates across genes, or by random assignment. Increasing the degree of clock-partitioning usually led to an improvement in the precision of divergence-time estimates, but this increase was asymptotic to a limit presumably imposed by fossil calibrations. Our clock-partitioning approaches yielded highly precise age estimates for several key nodes in the angiosperm phylogeny. For example, when partitioning the data into 20 clock-subsets based on patterns of among-lineage rate heterogeneity, we inferred crown angiosperms to have arisen 198–178 Ma. This demonstrates that judicious clock-partitioning can improve the precision of molecular dating based on phylogenomic data, but the meaning of this increased precision should be considered critically. PMID:29036288

  3. Crystallization and atomic diffusion behavior of high coercive Ta/Nd-Fe-B/Ta-based permanent magnetic thin film

    Energy Technology Data Exchange (ETDEWEB)

    Tian, Na; Zhang, Xiao; You, Caiyin; Fu, Huarui [Xi' an University of Technology, School of Materials Science and Engineering, Xi' an (China); Shen, Qianlong [Logistics University of People' s Armed Police Force, Tianjin (China)

    2017-06-15

    A high coercivity of about 20.4 kOe was obtained through post-annealing the sputtered Ta/Nd-Fe-B/Ta-based permanent magnetic thin films. Transmission electron microscopy (TEM) and X-ray photoelectron spectroscopy (XPS) analyses were performed to investigate the crystallization and atomic diffusion behaviors during post-annealing. The results show that the buffer and capping Ta layers prefered to intermix with Fe and B atoms, and Nd tends to be combined with O atoms. The preferred atomic combination caused the appearance of the soft magnetic phase of Fe-Ta-B, resulting in a kink of the second quadratic magnetic hysteresis loop. The preferred atomic diffusion and phase formation of the thin films were well explained in terms of the formation enthalpy of the various compounds. (orig.)

  4. Natural radioisotopes. The ''atomic clock'' for the age determination of rocks and archeological discoveries; Natuerliche Radioisotope. Die ''Atomuhr'' fuer die Bestimmung des absoluten Alters von Gesteinen und archaeologischen Funden

    Energy Technology Data Exchange (ETDEWEB)

    Heuel-Fabianek, Burkhard [Forschungszentrum Juelich (Germany)

    2017-04-01

    The contribution describes the fundamentals of radiometric age determination based on natural radionuclides. Organic (carbon containing) materials can be dated up to an age of 60.000 years using C-14. The methods used for radiometric dating of rocks and minerals include the radioactive decay series of U-238, U-235, Th -232, but also the beta decay of Rb-87 to Sr-87 or K-40 to Ar-40. The absolute age of rocks is not necessarily identical with the radiometric dating result, since geological processes could influence the radionuclide ratio.

  5. Breast cancer risk, nightwork, and circadian clock gene polymorphisms.

    Science.gov (United States)

    Truong, Thérèse; Liquet, Benoît; Menegaux, Florence; Plancoulaine, Sabine; Laurent-Puig, Pierre; Mulot, Claire; Cordina-Duverger, Emilie; Sanchez, Marie; Arveux, Patrick; Kerbrat, Pierre; Richardson, Sylvia; Guénel, Pascal

    2014-08-01

    Night shift work has been associated with an increased risk of breast cancer pointing to a role of circadian disruption. We investigated the role of circadian clock gene polymorphisms and their interaction with nightwork in breast cancer risk in a population-based case-control study in France including 1126 breast cancer cases and 1174 controls. We estimated breast cancer risk associated with each of the 577 single nucleotide polymorphisms (SNPs) in 23 circadian clock genes. We also used a gene- and pathway-based approach to investigate the overall effect on breast cancer of circadian clock gene variants that might not be detected in analyses based on individual SNPs. Interactions with nightwork were tested at the SNP, gene, and pathway levels. We found that two SNPs in RORA (rs1482057 and rs12914272) were associated with breast cancer in the whole sample and among postmenopausal women. In this subpopulation, we also reported an association with rs11932595 in CLOCK, and with CLOCK, RORA, and NPAS2 in the analyses at the gene level. Breast cancer risk in postmenopausal women was also associated with overall genetic variation in the circadian gene pathway (P=0.04), but this association was not detected in premenopausal women. There was some evidence of an interaction between PER1 and nightwork in breast cancer in the whole sample (P=0.024), although the effect was not statistically significant after correcting for multiple testing (P=0.452). Our results support the hypothesis that circadian clock gene variants modulate breast cancer risk. © 2014 Society for Endocrinology.

  6. Revisiting a Classic Study of the Molecular Clock.

    Science.gov (United States)

    Robinson, Lauren M; Boland, Joseph R; Braverman, John M

    2016-03-01

    A constant rate of molecular evolution among homologous proteins and across lineages is known as the molecular clock. This concept has been useful for estimating divergence times. Here, we revisit a study by Richard Dickerson (J Mol Evol 1:26-45, 1971), wherein he provided striking visual evidence for a constant rate of amino acid changes among various evolutionary branch points. Dickerson's study is commonly cited as support of the molecular clock and a figure from it is often reproduced in textbooks. Since its publication, however, there have been updates made to dates of common ancestors based on the fossil record that should be considered. Additionally, collecting the accession numbers and carefully outlining Dickerson's methods serves as a resource to students of the molecular clock hypothesis.

  7. Recent results of the pulsed optically pumped rubidium clock

    Science.gov (United States)

    Levi, F.; Micalizio, S.; Godone, A.; Calosso, C.; Bertacco, E.

    2017-11-01

    A laboratory prototype of a pulsed optically pumped (POP) clock based on a rubidium cell with buffer gas is described. This clock has shown very interesting physical and metrological features, such as negligible light-shift, strongly reduced cavity-pulling and very good frequency stability. In this regard, an Allan deviation of σy(τ) = 1.2 τ-1/2 for measurement times up to τ = 105 s has been measured. These results confirm the interesting perspectives of such a frequency standard and make it very attractive for several technological applications, such as radionavigation.

  8. Ultracold strontium clock

    DEFF Research Database (Denmark)

    Ludlow, A. D.; Blatt, S.; Zelevinsky, T.

    2008-01-01

    recent internationally based measurements of the Srclock frequency, we show improved constraints of gravitational andtemporal changes in the fine structure constant and theelectron-proton mass ratio. Finally, we describe how ultracoldatomic strontium, confined in an optical lattice, can beassociated...

  9. Long term stability of atomic time scales

    Science.gov (United States)

    Petit, Gérard; Arias, Elisa Felicitas

    2012-08-01

    International Atomic Time TAI gets its stability from some 400 atomic clocks worldwide that generate the free atomic scale EA L and its accuracy from a small number of primary frequency standards (PFS) which frequency measurements are used to steer the EAL frequency. Because TAI is computed in "real - time" (every month) and has operational constraints, it is not optimal and the BIPM computes in deferred time another time scale TT(BIPM), which is based on a weighted average of the evaluations of TAI frequency by the PFS. We show that a point has been reached where the stability of atomic time scales, the accuracy of primary frequency standards, and the capabilities of frequency transfer are approximately at a similar level, in the low 10 - 16 in relative frequency. The goal is now to reach and surpass 1x10 - 16 and the three fields are in various stages of advancement towards this aim. We review the stability and accuracy recently achieved by frequency standards, focusing on primary frequency standards on one hand, and on new secondary realizations e.g. based on optical transitions on the other hand. We study how these performances can translate to the performance of atomic time scales, and the possible implications of the availability of new high - accuracy frequency standards operating on a regular basis. Finally we show how time transfer is trying to keep up with the progresses of frequency standards. Time transfer is presently the limiting factor at short averaging time (e.g. 1 - 2 weeks) but it should not be limiting the long term stability of atomic time scales, which is the main need of many applications in astronomy.

  10. Tectonic blocks and molecular clocks

    OpenAIRE

    De Baets, Kenneth; Antonelli, Alex; Donoghue, Philip

    2016-01-01

    Evolutionary timescales have mainly used fossils for calibrating molecular clocks, though fossils only really provide minimum clade age constraints. In their place, phylogenetic trees can be calibrated by precisely dated geological events that have shaped biogeography. However, tectonic episodes are protracted, their role in vicariance is rarely justified, the biogeography of living clades and their antecedents may differ, and the impact of such events is contingent on ecology. Biogeographic ...

  11. Inertial Frames and Clock Rates

    CERN Document Server

    Kak, Subhash

    2012-01-01

    This article revisits the historiography of the problem of inertial frames. Specifically, the case of the twins in the clock paradox is considered to see that some resolutions implicitly assume inertiality for the non-accelerating twin. If inertial frames are explicitly identified by motion with respect to the large scale structure of the universe, it makes it possible to consider the relative inertiality of different frames.

  12. Horloge à réseau optique à atomes de Strontium

    OpenAIRE

    Baillard, Xavier

    2008-01-01

    This thesis presents the latest achievements regarding the optical lattice clock with Strontium atoms developed at LNE-SYRTE. After a review of the different types of optical clocks that are currently under development, we stress on the concept of optical lattice clock which was first imagined for 87Sr using the 1S0 - 3P0 transition. We exhibit the features of this atom, in particular the concept of magic wavelength for the trap, and the achievable performances for this kind of clock. The sec...

  13. Simultaneous Faraday filtering of the Mollow triplet sidebands with the Cs-D1 clock transition.

    Science.gov (United States)

    Portalupi, Simone Luca; Widmann, Matthias; Nawrath, Cornelius; Jetter, Michael; Michler, Peter; Wrachtrup, Jörg; Gerhardt, Ilja

    2016-11-25

    Hybrid quantum systems integrating semiconductor quantum dots (QDs) and atomic vapours become important building blocks for scalable quantum networks due to the complementary strengths of individual parts. QDs provide on-demand single-photon emission with near-unity indistinguishability comprising unprecedented brightness-while atomic vapour systems provide ultra-precise frequency standards and promise long coherence times for the storage of qubits. Spectral filtering is one of the key components for the successful link between QD photons and atoms. Here we present a tailored Faraday anomalous dispersion optical filter based on the caesium-D1 transition for interfacing it with a resonantly pumped QD. The presented Faraday filter enables a narrow-bandwidth (Δω=2π × 1 GHz) simultaneous filtering of both Mollow triplet sidebands. This result opens the way to use QDs as sources of single as well as cascaded photons in photonic quantum networks aligned to the primary frequency standard of the caesium clock transition.

  14. Effects of doping of calcium atom(s) on structural, electronic and optical properties of binary strontium chalcogenides - A theoretical investigation using DFT based FP-LAPW methodology

    Science.gov (United States)

    Bhattacharjee, Rahul; Chattopadhyaya, Surya

    2017-09-01

    The effects of doping of Ca atom(s) on structural, electronic and optical properties of binary strontium chalcogenide semiconductor compounds have been investigated theoretically using DFT based FP-LAPW approach by modeling the rock-salt (B1) ternary alloys CaxSr1-xS, CaxSr1-xSe and CaxSr1-xTe at some specific concentrations 0 ≤ x ≤ 1 and studying their aforesaid properties. The exchange-correlation potentials for their structural properties have been computed using the Wu-Cohen generalized-gradient approximation (WC-GGA) scheme, while those for the electronic and optical properties have been computed using recently developed Tran-Blaha modified Becke-Johnson (TB-mBJ) scheme. In addition, we have computed the electronic and optical properties with the traditional BLYP and PBE-GGA schemes for comparison. The atomic and orbital origin of different electronic states in the band structure of each of the compounds have been identified from the respective density of states (DOS). Using the approach of Zunger and co-workers, the microscopic origin of band gap bowing has been discussed in term of volume deformation, charge exchange and structural relaxation. Bonding characteristics among the constituent atoms of each of the specimens have been discussed from their charge density contour plots. Optical properties of the binary compounds and ternary alloys have been investigated theoretically in terms of their respective dielectric function, refractive index, normal incidence reflectivity and optical conductivity. Several calculated results have been compared with available experimental and other theoretical data.

  15. A Novel Graphene Oxide-Based Protein Interaction Measurement Using Atomic Force Microscopy.

    Science.gov (United States)

    Han, Sung-Woong; Morita, Kyohei; Adachi, Taiji

    2015-02-01

    Graphene oxide (GO) is a promising material for biological applications because of its excellent physical/chemical properties such as aqueous processability, amphiphilicity, and surface functionalizability. Here we introduce a new biological application of GO, a novel GO-based technique for probing protein interactions using atomic force microscopy (AFM). GO sheets were intercalated between the protein-modified AFM probe and the polymer substrate in order to reduce the non-specific adhesion force observed during single-molecule force spectroscopy (SMFS). In this study, we used SMFS to probe the interaction of the actin filament and actin-related protein 2/3 complex (Arp2/3), an actin-binding protein. Our results confirm that the GO sheet reduces nonspecific adhesion of the probe to the substrate. Using the GO-based technique, we succeeded in estimating the dissociation constant of the actin filament-binding protein interaction.

  16. Electrical tomography using atomic force microscopy and its application towards carbon nanotube-based interconnects.

    Science.gov (United States)

    Schulze, A; Hantschel, T; Dathe, A; Eyben, P; Ke, X; Vandervorst, W

    2012-08-03

    The fabrication and integration of low-resistance carbon nanotubes (CNTs) for interconnects in future integrated circuits requires characterization techniques providing structural and electrical information at the nanometer scale. In this paper we present a slice-and-view approach based on electrical atomic force microscopy. Material removal achieved by successive scanning using doped ultra-sharp full-diamond probes, manufactured in-house, enables us to acquire two-dimensional (2D) resistance maps originating from different depths (equivalently different CNT lengths) on CNT-based interconnects. Stacking and interpolating these 2D resistance maps results in a three-dimensional (3D) representation (tomogram). This allows insight from a structural (e.g. size, density, distribution, straightness) and electrical point of view simultaneously. By extracting the resistance evolution over the length of an individual CNT we derive quantitative information about the resistivity and the contact resistance between the CNT and bottom electrode.

  17. Multiscale modeling and experimental validation for nanochannel depth control in atomic force microscopy-based nanofabrication

    Energy Technology Data Exchange (ETDEWEB)

    Ren, Jiaqi; Liu, Pinkuan, E-mail: pkliu@sjtu.edu.cn; Zhu, Xiaobo; Zhang, Fan; Chen, Guozhen [State Key Laboratory of Mechanical System and Vibration, School of Mechanical Engineering, Shanghai Jiao Tong University, Shanghai 200240 (China)

    2014-08-21

    Nanochannels are essential features of many microelectronic and biomedical devices. To date, the most commonly employed method to fabricate these nanochannels is atomic force microscopy (AFM). However, there is presently a very poor understanding on the fundamental principles underlying this process, which limits its reliability and controllability. In this study, we present a comprehensive multiscale model by incorporating strain gradient plasticity and strain gradient elasticity theories, which can predict nanochannel depths during AFM-based nanofabrication. The modeling results are directly verified with experiments performed on Cu and Pt substrates. As this model can also be extended to include many additional conditions, it has broad applicability in a wide range of AFM-based nanofabrication applications.

  18. Molecular clocks and evolutionary relationships: possible distortions due to horizontal gene flow.

    Science.gov (United States)

    Syvanen, M

    1987-01-01

    This paper discusses recent evidence suggesting that genetic information from one species occasionally transfers to another remotely related species. Besides addressing the issue of whether or not the molecular data are consistent with a wide-spread influence of horizontal gene transfer, the paper shows that horizontal gene flow would not necessarily preclude a linear molecular clock or change the rate of molecular evolution (assuming the neutral allele theory). A pervasive influence of horizontal gene transfer is more than just consistent with the data of molecular evolution, it also provides a unique explanation for a number of possibly conflicting phylogenies and contradictory clocks. This phenomenon might explain why some protein clocks are linear while the superoxide dismutase clock is not, how the molecular data on the phylogeny of apes and Australian song birds are not necessarily in conflict with those based on morphology, and, finally, why the mycoplasmas have an accelerated molecular clock.

  19. Circadian clock regulation of skeletal muscle growth and repair [version 1; referees: 2 approved

    Directory of Open Access Journals (Sweden)

    Somik Chatterjee

    2016-06-01

    Full Text Available Accumulating evidence indicates that the circadian clock, a transcriptional/translational feedback circuit that generates ~24-hour oscillations in behavior and physiology, is a key temporal regulatory mechanism involved in many important aspects of muscle physiology. Given the clock as an evolutionarily-conserved time-keeping mechanism that synchronizes internal physiology to environmental cues, locomotor activities initiated by skeletal muscle enable entrainment to the light-dark cycles on earth, thus ensuring organismal survival and fitness. Despite the current understanding of the role of molecular clock in preventing age-related sarcopenia, investigations into the underlying molecular pathways that transmit clock signals to the maintenance of skeletal muscle growth and function are only emerging. In the current review, the importance of the muscle clock in maintaining muscle mass during development, repair and aging, together with its contribution to muscle metabolism, will be discussed. Based on our current understandings of how tissue-intrinsic muscle clock functions in the key aspects muscle physiology, interventions targeting the myogenic-modulatory activities of the clock circuit may offer new avenues for prevention and treatment of muscular diseases. Studies of mechanisms underlying circadian clock function and regulation in skeletal muscle warrant continued efforts.

  20. A functional genomics strategy reveals clockwork orange as a transcriptional regulator in the Drosophila circadian clock.

    Science.gov (United States)

    Matsumoto, Akira; Ukai-Tadenuma, Maki; Yamada, Rikuhiro G; Houl, Jerry; Uno, Kenichiro D; Kasukawa, Takeya; Dauwalder, Brigitte; Itoh, Taichi Q; Takahashi, Kuniaki; Ueda, Ryu; Hardin, Paul E; Tanimura, Teiichi; Ueda, Hiroki R

    2007-07-01

    The Drosophila circadian clock consists of integrated autoregulatory feedback loops, making the clock difficult to elucidate without comprehensively identifying the network components in vivo. Previous studies have adopted genome-wide screening for clock-controlled genes using high-density oligonucleotide arrays that identified hundreds of clock-controlled genes. In an attempt to identify the core clock genes among these candidates, we applied genome-wide functional screening using an RNA interference (RNAi) system in vivo. Here we report the identification of novel clock gene candidates including clockwork orange (cwo), a transcriptional repressor belonging to the basic helix-loop-helix ORANGE family. cwo is rhythmically expressed and directly regulated by CLK-CYC through canonical E-box sequences. A genome-wide search for its target genes using the Drosophila genome tiling array revealed that cwo forms its own negative feedback loop and directly suppresses the expression of other clock genes through the E-box sequence. Furthermore, this negative transcriptional feedback loop contributes to sustaining a high-amplitude circadian oscillation in vivo. Based on these results, we propose that the competition between cyclic CLK-CYC activity and the adjustable threshold imposed by CWO keeps E-box-mediated transcription within the controllable range of its activity, thereby rendering a Drosophila circadian clock capable of generating high-amplitude oscillation.

  1. Noncancer mortality based on the Hiroshima Atomic Bomb survivors registry over 30 years, 1968-1997

    Energy Technology Data Exchange (ETDEWEB)

    Kasagi, Keiko [Hiroshima Univ. (Japan). Research Inst. for Radiation Biology and Medicine

    2002-04-01

    The relation of radiation exposure with noncancer mortality was examined on 44,514 atomic bomb survivors (17,935 males, 26,579 females, and mean age 22.8{+-}15.7 yrs at the time of bombing) registered at Research Institute for Radiation Biology and Medicine, Hiroshima University, based on mortality follow-up over 30 years, 1968-1997. Noncancer mortality was significantly related to radiation dose with relative risk of 1.06 at 1 Sv radiation dose, although weaker than the dose response in solid cancer mortality. The significant dose responses were observed especially in circulatory disease, stroke and urinary organ disease, and suggestive dose response in pneumonia. The temporal pattern in dose response by age at the time of bombing indicated that the relative risk of noncancer mortality was higher with follow-up period, which is contrary to a decreasing dose response in solid cancer mortality with follow-up period. The tendency was remarkable in those survivors younger at the time of bombing. These findings suggest that the significant radiation risk observed in noncancer mortality might increase as the proportion of younger survivors among atomic bomb survivors increases. (author)

  2. Ta2O5- and TiO2-based nanostructures made by atomic layer deposition

    Science.gov (United States)

    Kemell, Marianna; Härkönen, Emma; Pore, Viljami; Ritala, Mikko; Leskelä, Markku

    2010-01-01

    Nanotubular Ta2O5- and TiO2-based structures were prepared by atomic layer deposition of Ta2O5 and TiO2 thin films, conformally on pore walls of porous alumina membranes. Both self-supporting alumina membranes and Si-supported thin-film membranes were studied as templates. Long Ta2O5 and TiO2 nanotubes were prepared successfully with the self-supporting membranes. The TiO2 nanotubes showed photocatalytic activity in methylene blue degradation under UV illumination. The Ta2O5 and TiO2 nanotubes were further modified by depositing Pt nanoparticles inside them. The Si-supported thin-film membranes were used as templates for the preparation of robust Ta2O5-coated Ni nanorod arrays on a Si substrate using electrodeposition, chemical etching and atomic layer deposition. In addition to photocatalysis, the nanostructures prepared in this work may find applications as other catalysts and as solid-state or electrochemical capacitors.

  3. Circadian clock components in the rat neocortex

    DEFF Research Database (Denmark)

    Rath, Martin Fredensborg; Rohde, Kristian; Fahrenkrug, Jan

    2013-01-01

    The circadian master clock of the mammalian brain resides in the suprachiasmatic nucleus (SCN) of the hypothalamus. At the molecular level, the clock of the SCN is driven by a transcriptional/posttranslational autoregulatory network with clock gene products as core elements. Recent investigations...... in the rat neocortex. Among these, Per1, Per2, Per3, Cry1, Bmal1, Nr1d1 and Dbp were found to exhibit daily rhythms. The amplitude of circadian oscillation in neocortical clock gene expression was damped and the peak delayed as compared with the SCN. Lesions of the SCN revealed that rhythmic clock gene...... expression in the neocortex is dependent on the SCN. In situ hybridization and immunohistochemistry showed that products of the canonical clock gene Per2 are located in perikarya throughout all areas of the neocortex. These findings show that local circadian oscillators driven by the SCN reside within...

  4. The Allan variance in the presence of a compound Poisson process modelling clock frequency jumps

    Science.gov (United States)

    Formichella, Valerio

    2016-12-01

    Atomic clocks can be affected by frequency jumps occurring at random times and with a random amplitude. The frequency jumps degrade the clock stability and this is captured by the Allan variance. In this work we assume that the random jumps can be modelled by a compound Poisson process, independent of the other stochastic and deterministic processes affecting the clock stability. Then, we derive the analytical expression of the Allan variance of a jumping clock. We find that the analytical Allan variance does not depend on the actual shape of the jumps amplitude distribution, but only on its first and second moments, and its final form is the same as for a clock with a random walk of frequency and a frequency drift. We conclude that the Allan variance cannot distinguish between a compound Poisson process and a Wiener process, hence it may not be sufficient to correctly identify the fundamental noise processes affecting a clock. The result is general and applicable to any oscillator, whose frequency is affected by a jump process with the described statistics.

  5. Genetically Blocking the Zebrafish Pineal Clock Affects Circadian Behavior

    National Research Council Canada - National Science Library

    Ben-Moshe Livne, Zohar; Alon, Shahar; Vallone, Daniela; Bayleyen, Yared; Tovin, Adi; Shainer, Inbal; Nisembaum, Laura G; Aviram, Idit; Smadja-Storz, Sima; Fuentes, Michael; Falcón, Jack; Eisenberg, Eli; Klein, David C; Burgess, Harold A; Foulkes, Nicholas S; Gothilf, Yoav

    2016-01-01

    ... its synchronization with the solar day [2]. At the heart of the molecular clock in vertebrates are daily oscillations in the expression and function of evolutionarily conserved clock genes and their protein products, including CLOCK and BMAL, which form heterodimers that activate the transcription of clock and clock-controlled genes (CCGs) via E-box enhan...

  6. Test of Special Relativity Using a Fiber Network of Optical Clocks

    Science.gov (United States)

    Delva, P.; Lodewyck, J.; Bilicki, S.; Bookjans, E.; Vallet, G.; Le Targat, R.; Pottie, P.-E.; Guerlin, C.; Meynadier, F.; Le Poncin-Lafitte, C.; Lopez, O.; Amy-Klein, A.; Lee, W.-K.; Quintin, N.; Lisdat, C.; Al-Masoudi, A.; Dörscher, S.; Grebing, C.; Grosche, G.; Kuhl, A.; Raupach, S.; Sterr, U.; Hill, I. R.; Hobson, R.; Bowden, W.; Kronjäger, J.; Marra, G.; Rolland, A.; Baynes, F. N.; Margolis, H. S.; Gill, P.

    2017-06-01

    Phase compensated optical fiber links enable high accuracy atomic clocks separated by thousands of kilometers to be compared with unprecedented statistical resolution. By searching for a daily variation of the frequency difference between four strontium optical lattice clocks in different locations throughout Europe connected by such links, we improve upon previous tests of time dilation predicted by special relativity. We obtain a constraint on the Robertson-Mansouri-Sexl parameter |α |≲1.1 ×10-8, quantifying a violation of time dilation, thus improving by a factor of around 2 the best known constraint obtained with Ives-Stilwell type experiments, and by 2 orders of magnitude the best constraint obtained by comparing atomic clocks. This work is the first of a new generation of tests of fundamental physics using optical clocks and fiber links. As clocks improve, and as fiber links are routinely operated, we expect that the tests initiated in this Letter will improve by orders of magnitude in the near future.

  7. Test of Special Relativity Using a Fiber Network of Optical Clocks.

    Science.gov (United States)

    Delva, P; Lodewyck, J; Bilicki, S; Bookjans, E; Vallet, G; Le Targat, R; Pottie, P-E; Guerlin, C; Meynadier, F; Le Poncin-Lafitte, C; Lopez, O; Amy-Klein, A; Lee, W-K; Quintin, N; Lisdat, C; Al-Masoudi, A; Dörscher, S; Grebing, C; Grosche, G; Kuhl, A; Raupach, S; Sterr, U; Hill, I R; Hobson, R; Bowden, W; Kronjäger, J; Marra, G; Rolland, A; Baynes, F N; Margolis, H S; Gill, P

    2017-06-02

    Phase compensated optical fiber links enable high accuracy atomic clocks separated by thousands of kilometers to be compared with unprecedented statistical resolution. By searching for a daily variation of the frequency difference between four strontium optical lattice clocks in different locations throughout Europe connected by such links, we improve upon previous tests of time dilation predicted by special relativity. We obtain a constraint on the Robertson-Mansouri-Sexl parameter |α|≲1.1×10^{-8}, quantifying a violation of time dilation, thus improving by a factor of around 2 the best known constraint obtained with Ives-Stilwell type experiments, and by 2 orders of magnitude the best constraint obtained by comparing atomic clocks. This work is the first of a new generation of tests of fundamental physics using optical clocks and fiber links. As clocks improve, and as fiber links are routinely operated, we expect that the tests initiated in this Letter will improve by orders of magnitude in the near future.

  8. The Square Light Clock and Special Relativity

    Science.gov (United States)

    Galli, J. Ronald; Amiri, Farhang

    2012-01-01

    A thought experiment that includes a square light clock is similar to the traditional vertical light beam and mirror clock, except it is made up of four mirrors placed at a 45[degree] angle at each corner of a square of length L[subscript 0], shown in Fig. 1. Here we have shown the events as measured in the rest frame of the square light clock. By…

  9. Circadian clock genes, ovarian development and diapause

    Directory of Open Access Journals (Sweden)

    Bradshaw William E

    2010-09-01

    Full Text Available Abstract Insects, like most organisms, have an internal circadian clock that oscillates with a daily rhythmicity, and a timing mechanism that mediates seasonal events, including diapause. In research published in BMC Biology, Ikeno et al. show that downregulation of the circadian clock genes period and cycle affects expression of ovarian diapause in the insect Riptortus pedestris. They interpret these important results as support for Erwin Bünning's (1936 hypothesis that the circadian clock constitutes the basis of photoperiodism. However, their observations could also be the result of pleiotropic effects of the individual clock genes. See research article http://www.biomedcentral.com/1741-7007/8/116

  10. Current status and perspectives in atomic force microscopy-based identification of cellular transformation.

    Science.gov (United States)

    Dong, Chenbo; Hu, Xiao; Dinu, Cerasela Zoica

    2016-01-01

    Understanding the complex interplay between cells and their biomechanics and how the interplay is influenced by the extracellular microenvironment, as well as how the transforming potential of a tissue from a benign to a cancerous one is related to the dynamics of both the cell and its surroundings, holds promise for the development of targeted translational therapies. This review provides a comprehensive overview of atomic force microscopy-based technology and its applications for identification of cellular progression to a cancerous phenotype. The review also offers insights into the advancements that are required for the next user-controlled tool to allow for the identification of early cell transformation and thus potentially lead to improved therapeutic outcomes.

  11. Atomic Force Microscopy Based Nanorobotics Modelling, Simulation, Setup Building and Experiments

    CERN Document Server

    Xie, Hui; Régnier, Stéphane; Sitti, Metin

    2012-01-01

    The atomic force microscope (AFM) has been successfully used to perform nanorobotic manipulation operations on nanoscale entities such as particles, nanotubes, nanowires, nanocrystals, and DNA since 1990s. There have been many progress on modeling, imaging, teleoperated or automated control, human-machine interfacing, instrumentation, and applications of AFM based nanorobotic manipulation systems in literature. This book aims to include all of such state-of-the-art progress in an organized, structured, and detailed manner as a reference book and also potentially a textbook in nanorobotics and any other nanoscale dynamics, systems and controls related research and education. Clearly written and well-organized, this text introduces designs and prototypes of the nanorobotic systems in detail with innovative principles of three-dimensional manipulation force microscopy and parallel imaging/manipulation force microscopy.

  12. The possibility of multi-layer nanofabrication via atomic force microscope-based pulse electrochemical nanopatterning

    Science.gov (United States)

    Kim, Uk Su; Morita, Noboru; Lee, Deug Woo; Jun, Martin; Park, Jeong Woo

    2017-05-01

    Pulse electrochemical nanopatterning, a non-contact scanning probe lithography process using ultrashort voltage pulses, is based primarily on an electrochemical machining process using localized electrochemical oxidation between a sharp tool tip and the sample surface. In this study, nanoscale oxide patterns were formed on silicon Si (100) wafer surfaces via electrochemical surface nanopatterning, by supplying external pulsed currents through non-contact atomic force microscopy. Nanoscale oxide width and height were controlled by modulating the applied pulse duration. Additionally, protruding nanoscale oxides were removed completely by simple chemical etching, showing a depressed pattern on the sample substrate surface. Nanoscale two-dimensional oxides, prepared by a localized electrochemical reaction, can be defined easily by controlling physical and electrical variables, before proceeding further to a layer-by-layer nanofabrication process.

  13. Passive microrheology of soft materials with atomic force microscopy: A wavelet-based spectral analysis

    Energy Technology Data Exchange (ETDEWEB)

    Martinez-Torres, C.; Streppa, L. [CNRS, UMR5672, Laboratoire de Physique, Ecole Normale Supérieure de Lyon, 46 Allée d' Italie, Université de Lyon, 69007 Lyon (France); Arneodo, A.; Argoul, F. [CNRS, UMR5672, Laboratoire de Physique, Ecole Normale Supérieure de Lyon, 46 Allée d' Italie, Université de Lyon, 69007 Lyon (France); CNRS, UMR5798, Laboratoire Ondes et Matière d' Aquitaine, Université de Bordeaux, 351 Cours de la Libération, 33405 Talence (France); Argoul, P. [Université Paris-Est, Ecole des Ponts ParisTech, SDOA, MAST, IFSTTAR, 14-20 Bd Newton, Cité Descartes, 77420 Champs sur Marne (France)

    2016-01-18

    Compared to active microrheology where a known force or modulation is periodically imposed to a soft material, passive microrheology relies on the spectral analysis of the spontaneous motion of tracers inherent or external to the material. Passive microrheology studies of soft or living materials with atomic force microscopy (AFM) cantilever tips are rather rare because, in the spectral densities, the rheological response of the materials is hardly distinguishable from other sources of random or periodic perturbations. To circumvent this difficulty, we propose here a wavelet-based decomposition of AFM cantilever tip fluctuations and we show that when applying this multi-scale method to soft polymer layers and to living myoblasts, the structural damping exponents of these soft materials can be retrieved.

  14. Energy efficient lighting for the biological clock

    Science.gov (United States)

    Lang, Dieter

    2011-03-01

    Unexpectedly the existence of a formerly unknown type of photoreceptor in the human eye has been proven about 10 years ago. Primarily sensitive in the blue spectral range it is responsible for transducing light signals directly into the brain, controlling essential biological functions like setting of the circadian clock or daytime activation. Recent scientific research has enabled beneficial applications. The paradigms for good lighting design are shifting and standardization activities have been started to build up a sound base for description and application of biologically effective lighting. Latest improvements of LED technology are now allowing realizeation of advanced lighting solutions based on SSL. Optimization of biological effects is possible while demands on good vision are maintained. As biologically effective lighting is addressing a second system besides vision in the human body a measure beyond lumen per watt is required for a proper description of energy efficiency.

  15. Interdependence of nutrient metabolism and the circadian clock system: Importance for metabolic health

    Science.gov (United States)

    Ribas-Latre, Aleix; Eckel-Mahan, Kristin

    2016-01-01

    , can destroy synchrony between peripheral clocks and the central pacemaker in the brain as well as between peripheral clocks themselves. In addition, we review several studies looking at clock gene SNPs in humans and the metabolic phenotypes or tendencies associated with particular clock gene mutations. Major conclusions Targeted use of specific nutrients based on chronotype has the potential for immense clinical utility in the future. Macronutrients and micronutrients have the ability to function as zeitgebers for the clock by activating or modulating specific clock proteins or accessory proteins (such as nuclear receptors). Circadian clock control by nutrients can be tissue-specific. With a better understanding of the mechanisms that support nutrient-induced circadian control in specific tissues, human chronotype and SNP information might eventually be used to tailor nutritional regimens for metabolic disease treatment and thus be an important part of personalized medicine's future. PMID:26977390

  16. Interdependence of nutrient metabolism and the circadian clock system: Importance for metabolic health.

    Science.gov (United States)

    Ribas-Latre, Aleix; Eckel-Mahan, Kristin

    2016-03-01

    peripheral clocks and the central pacemaker in the brain as well as between peripheral clocks themselves. In addition, we review several studies looking at clock gene SNPs in humans and the metabolic phenotypes or tendencies associated with particular clock gene mutations. Targeted use of specific nutrients based on chronotype has the potential for immense clinical utility in the future. Macronutrients and micronutrients have the ability to function as zeitgebers for the clock by activating or modulating specific clock proteins or accessory proteins (such as nuclear receptors). Circadian clock control by nutrients can be tissue-specific. With a better understanding of the mechanisms that support nutrient-induced circadian control in specific tissues, human chronotype and SNP information might eventually be used to tailor nutritional regimens for metabolic disease treatment and thus be an important part of personalized medicine's future.

  17. The study on the atomic force microscopy base nanoscale electrical discharge machining.

    Science.gov (United States)

    Huang, Jen-Ching; Chen, Chung-Ming

    2012-01-01

    This study proposes an innovative atomic force microscopy (AFM) based nanoscale electrical discharge machining (AFM-based nanoEDM) system which combines an AFM with a self-produced metallic probe and a high-voltage generator to create an atmospheric environment AFM-based nanoEDM system and a deionized water (DI water) environment AFM-based nanoEDM system. This study combines wire-cut processing and electrochemical tip sharpening techniques on a 40-µm thick stainless steel sheet to produce a high conductive AFM probes, the production can withstand high voltage and large current. The tip radius of these probes is approximately 40 nm. A probe test was executed on the AFM using probes to obtain nanoscales morphology of Si wafer surface. The silicon wafer was as a specimen to carry out AFM-base nanoEDM process in atmospheric and DI water environments by AFM-based nanoEDM system. After experiments, the results show that the atmospheric and DI water environment AFM-based nanoEDM systems operate smoothly. From experimental results, it can be found that the electric discharge depth of the silicon wafer at atmospheric environments is a mere 14.54 nm. In a DI water environment, the depth of electric discharge of the silicon wafer can reach 25.4 nm. This indicates that the EDM ability of DI water environment AFM-based nanoEDM system is higher than that of atmospheric environment AFM-based nanoEDM system. After multiple nanoEDM process, the tips become blunt. After applying electrochemical tip sharpening techniques, the tip radius can return to approximately 40 nm. Therefore, AFM probes produced in this study can be reused. © Wiley Periodicals, Inc.

  18. Ferromagnetism and Half-Metallicity in Atomically Thin Holey Nitrogenated Graphene Based Systems.

    Science.gov (United States)

    Choudhuri, Indrani; Pathak, Biswarup

    2017-09-06

    Metal-free half-metallicity has been the subject of immense research focus in the field of spintronic devices. By using density functional theoretical (DFT) calculations, atomically thin holey nitrogenated graphene (C2 N) based systems are studied for possible spintronic applications. Ferromagnetism is observed in all the C-doped holey nitrogenated graphene. Interestingly, the holey nitrogenated graphene (C2 N) based system shows strong half-metallicity with a Curie temperature of approximately 297 K when a particular C-doping concentration is reached. It shows a strong half-metallicity compared with any metal-free systems studied to date. Thus, such carbon nitride based systems can be used for a 100 % spin polarized current. Furthermore, such C-doped systems show excellent dynamical, thermal, and mechanical properties. Thus, we predict a metal-free planar ferromagnetic half-metallic holey nitrogenated graphene based system for room-temperature spintronic devices. © 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

  19. Self-stabilizing byzantine-fault-tolerant clock synchronization system and method

    Science.gov (United States)

    Malekpour, Mahyar R. (Inventor)

    2012-01-01

    Systems and methods for rapid Byzantine-fault-tolerant self-stabilizing clock synchronization are provided. The systems and methods are based on a protocol comprising a state machine and a set of monitors that execute once every local oscillator tick. The protocol is independent of specific application specific requirements. The faults are assumed to be arbitrary and/or malicious. All timing measures of variables are based on the node's local clock and thus no central clock or externally generated pulse is used. Instances of the protocol are shown to tolerate bursts of transient failures and deterministically converge with a linear convergence time with respect to the synchronization period as predicted.

  20. Gigabit Ethernet Asynchronous Clock Compensation FIFO

    Science.gov (United States)

    Duhachek, Jeff

    2012-01-01

    Clock compensation for Gigabit Ethernet is necessary because the clock recovered from the 1.25 Gb/s serial data stream has the potential to be 200 ppm slower or faster than the system clock. The serial data is converted to 10-bit parallel data at a 125 MHz rate on a clock recovered from the serial data stream. This recovered data needs to be processed by a system clock that is also running at a nominal rate of 125 MHz, but not synchronous to the recovered clock. To cross clock domains, an asynchronous FIFO (first-in-first-out) is used, with the write pointer (wprt) in the recovered clock domain and the read pointer (rptr) in the system clock domain. Because the clocks are generated from separate sources, there is potential for FIFO overflow or underflow. Clock compensation in Gigabit Ethernet is possible by taking advantage of the protocol data stream features. There are two distinct data streams that occur in Gigabit Ethernet where identical data is transmitted for a period of time. The first is configuration, which happens during auto-negotiation. The second is idle, which occurs at the end of auto-negotiation and between every packet. The identical data in the FIFO can be repeated by decrementing the read pointer, thus compensating for a FIFO that is draining too fast. The identical data in the FIFO can also be skipped by incrementing the read pointer, which compensates for a FIFO draining too slowly. The unique and novel features of this FIFO are that it works in both the idle stream and the configuration streams. The increment or decrement of the read pointer is different in the idle and compensation streams to preserve disparity. Another unique feature is that the read pointer to write pointer difference range changes between compensation and idle to minimize FIFO latency during packet transmission.

  1. Crystal engineering of giant molecules based on perylene diimide conjugated polyhedral oligomeric silsesquioxane nano-atom

    Science.gov (United States)

    Ren, He

    . In such "bottom-up" approach, the precise fabrication of 2 nm 100 nm nanostructures, is of great research interest. In this thesis, crystal engineering of giant molecules based on PDI conjugated POSS Nano-Atom (PDI-BPOSS) nano-atoms via self-assembly is performed and studied. Herein, three different giant molecules were synthesized: shape amphiphile, m-phenyl-(PDI-BPOSS)2 (S1) and tetrahedron, R-(PDI-BPOSS)4 (S2) and S-(PDI-BPOSS)4 (S3). Single crystals were grown for S1 and S2, X-ray diffraction (XRD), Scanning Electron Microscopy (SEM) and transmission electron microscopy (TEM) were performed, and crystal structures of these samples were determined, while hexagonal superlattice without crystal order can be observed for S3 to exhibit crystal-like morphology.

  2. Arabidopsis circadian clock and photoperiodism: time to think about location

    OpenAIRE

    Imaizumi, Takato

    2009-01-01

    Plants possess a circadian clock that enables them to coordinate internal biological events with external daily changes. Recent studies in Arabidopsis revealed that tissue specific clock components exist and that the clock network architecture also varies within different organs. These findings indicate that the makeup of circadian clock(s) within a plant is quite variable. Plants utilize the circadian clock to measure day-length changes for regulating seasonal responses, such as flowering. T...

  3. The influence of physical and physiological cues on atomic force microscopy-based cell stiffness assessment.

    Directory of Open Access Journals (Sweden)

    Yu-Wei Chiou

    Full Text Available Atomic force microscopy provides a novel technique for differentiating the mechanical properties of various cell types. Cell elasticity is abundantly used to represent the structural strength of cells in different conditions. In this study, we are interested in whether physical or physiological cues affect cell elasticity in Atomic force microscopy (AFM-based assessments. The physical cues include the geometry of the AFM tips, the indenting force and the operating temperature of the AFM. All of these cues show a significant influence on the cell elasticity assessment. Sharp AFM tips create a two-fold increase in the value of the effective Young's modulus (E(eff relative to that of the blunt tips. Higher indenting force at the same loading rate generates higher estimated cell elasticity. Increasing the operation temperature of the AFM leads to decreases in the cell stiffness because the structure of actin filaments becomes disorganized. The physiological cues include the presence of fetal bovine serum or extracellular matrix-coated surfaces, the culture passage number, and the culture density. Both fetal bovine serum and the extracellular matrix are critical for cells to maintain the integrity of actin filaments and consequently exhibit higher elasticity. Unlike primary cells, mouse kidney progenitor cells can be passaged and maintain their morphology and elasticity for a very long period without a senescence phenotype. Finally, cell elasticity increases with increasing culture density only in MDCK epithelial cells. In summary, for researchers who use AFM to assess cell elasticity, our results provide basic and significant information about the suitable selection of physical and physiological cues.

  4. Magnetoencephalography with a Cs-based high-sensitivity compact atomic magnetometer

    Science.gov (United States)

    Sheng, Jingwei; Wan, Shuangai; Sun, Yifan; Dou, Rongshe; Guo, Yuhao; Wei, Kequan; He, Kaiyan; Qin, Jie; Gao, Jia-Hong

    2017-09-01

    In recent years, substantial progress has been made in developing a new generation of magnetoencephalography (MEG) with a spin-exchange relaxation free (SERF)-based atomic magnetometer (AM). An AM employs alkali atoms to detect weak magnetic fields. A compact AM array with high sensitivity is crucial to the design; however, most proposed compact AMs are potassium (K)- or rubidium (Rb)-based with single beam configurations. In the present study, a pump-probe two beam configuration with a Cesium (Cs)-based AM (Cs-AM) is introduced to detect human neuronal magnetic fields. The length of the vapor cell is 4 mm, which can fully satisfy the need of designing a compact sensor array. Compared with state-of-the-art compact AMs, our new Cs-AM has two advantages. First, it can be operated in a SERF regime, requiring much lower heating temperature, which benefits the sensor with a closer distance to scalp due to ease of thermal insulation and less electric heating noise interference. Second, the two-beam configuration in the design can achieve higher sensitivity. It is free of magnetic modulation, which is necessary in one-beam AMs; however, such modulation may cause other interference in multi-channel circumstances. In the frequency band between 10 Hz and 30 Hz, the noise level of the proposed Cs-AM is approximately 10 f T/Hz1/2, which is comparable with state-of-the-art K- or Rb-based compact AMs. The performance of the Cs-AM was verified by measuring human auditory evoked fields (AEFs) in reference to commercial superconducting quantum interference device (SQUID) channels. By using a Cs-AM, we observed a clear peak in AEFs around 100 ms (M100) with a much larger amplitude compared with that of a SQUID, and the temporal profiles of the two devices were in good agreement. The results indicate the possibility of using the compact Cs-AM for MEG recordings, and the current Cs-AM has the potential to be designed for multi-sensor arrays and gradiometers for future neuroscience

  5. The segmentation clock: inherited trait or universal design principle?

    Science.gov (United States)

    Richmond, David L; Oates, Andrew C

    2012-12-01

    Metamerism is a widespread feature of multicellular body plans; however, our understanding of the underlying mechanisms that generate these patterns is currently based on only a few model organisms. In particular, vertebrate embryos use a segmentation clock to rhythmically and sequentially add segments in concert with posterior elongation of their body. Recent evidence of a segmentation clock acting in arthropods indicates that this mechanism may be a widely used strategy for generating serial anatomy in animals. Whether this is due to homology or convergence is not yet known, but the recent discovery of an oscillatory process associated with the production of sequential root primordia in plants suggests that a segmentation clock is a fundamental patterning principle in growing tissues, independent of ancestry. In this review, we consider the principles of the segmentation clock that may be conserved across the animal and plant kingdoms, and discuss opportunities for cross-fertilization between these active fields of research. Copyright © 2012 Elsevier Ltd. All rights reserved.

  6. Topology and dynamics of the zebrafish segmentation clock core circuit.

    Directory of Open Access Journals (Sweden)

    Christian Schröter

    Full Text Available During vertebrate embryogenesis, the rhythmic and sequential segmentation of the body axis is regulated by an oscillating genetic network termed the segmentation clock. We describe a new dynamic model for the core pace-making circuit of the zebrafish segmentation clock based on a systematic biochemical investigation of the network's topology and precise measurements of somitogenesis dynamics in novel genetic mutants. We show that the core pace-making circuit consists of two distinct negative feedback loops, one with Her1 homodimers and the other with Her7:Hes6 heterodimers, operating in parallel. To explain the observed single and double mutant phenotypes of her1, her7, and hes6 mutant embryos in our dynamic model, we postulate that the availability and effective stability of the dimers with DNA binding activity is controlled in a "dimer cloud" that contains all possible dimeric combinations between the three factors. This feature of our model predicts that Hes6 protein levels should oscillate despite constant hes6 mRNA production, which we confirm experimentally using novel Hes6 antibodies. The control of the circuit's dynamics by a population of dimers with and without DNA binding activity is a new principle for the segmentation clock and may be relevant to other biological clocks and transcriptional regulatory networks.

  7. RNA-seq analysis of Drosophila clock and non-clock neurons reveals neuron-specific cycling and novel candidate neuropeptides.

    Directory of Open Access Journals (Sweden)

    Katharine C Abruzzi

    2017-02-01

    Full Text Available Locomotor activity rhythms are controlled by a network of ~150 circadian neurons within the adult Drosophila brain. They are subdivided based on their anatomical locations and properties. We profiled transcripts "around the clock" from three key groups of circadian neurons with different functions. We also profiled a non-circadian outgroup, dopaminergic (TH neurons. They have cycling transcripts but fewer than clock neurons as well as low expression and poor cycling of clock gene transcripts. This suggests that TH neurons do not have a canonical circadian clock and that their gene expression cycling is driven by brain systemic cues. The three circadian groups are surprisingly diverse in their cycling transcripts and overall gene expression patterns, which include known and putative novel neuropeptides. Even the overall phase distributions of cycling transcripts are distinct, indicating that different regulatory principles govern transcript oscillations. This surprising cell-type diversity parallels the functional heterogeneity of the different neurons.

  8. Digital clocks: simple Boolean models can quantitatively describe circadian systems

    Science.gov (United States)

    Akman, Ozgur E.; Watterson, Steven; Parton, Andrew; Binns, Nigel; Millar, Andrew J.; Ghazal, Peter

    2012-01-01

    The gene networks that comprise the circadian clock modulate biological function across a range of scales, from gene expression to performance and adaptive behaviour. The clock functions by generating endogenous rhythms that can be entrained to the external 24-h day–night cycle, enabling organisms to optimally time biochemical processes relative to dawn and dusk. In recent years, computational models based on differential equations have become useful tools for dissecting and quantifying the complex regulatory relationships underlying the clock's oscillatory dynamics. However, optimizing the large parameter sets characteristic of these models places intense demands on both computational and experimental resources, limiting the scope of in silico studies. Here, we develop an approach based on Boolean logic that dramatically reduces the parametrization, making the state and parameter spaces finite and tractable. We introduce efficient methods for fitting Boolean models to molecular data, successfully demonstrating their application to synthetic time courses generated by a number of established clock models, as well as experimental expression levels measured using luciferase imaging. Our results indicate that despite their relative simplicity, logic models can (i) simulate circadian oscillations with the correct, experimentally observed phase relationships among genes and (ii) flexibly entrain to light stimuli, reproducing the complex responses to variations in daylength generated by more detailed differential equation formulations. Our work also demonstrates that logic models have sufficient predictive power to identify optimal regulatory structures from experimental data. By presenting the first Boolean models of circadian circuits together with general techniques for their optimization, we hope to establish a new framework for the systematic modelling of more complex clocks, as well as other circuits with different qualitative dynamics. In particular, we

  9. A Miniature Wide Band Atomic Magnetometer

    Science.gov (United States)

    2011-12-01

    current circuit is easiest to explain if we at first ignore the capacitors . The reference and the DAC output are combined by R401 and R402 to make...atomic magnetometer CSAC – Chip scale atomic clock DAC – Digital to Analog Converter DARPA – Defense Advanced Research Projects Agency DBR...Transform FPGA – Field Programmable Gate Array GHz – Gigahertz MEMS – Micro-Electro Mechanical System MF – z-component Magnetic Quantum Number, MF MFTFM

  10. Global synchronization of parallel processors using clock pulse width modulation

    Science.gov (United States)

    Chen, Dong; Ellavsky, Matthew R.; Franke, Ross L.; Gara, Alan; Gooding, Thomas M.; Haring, Rudolf A.; Jeanson, Mark J.; Kopcsay, Gerard V.; Liebsch, Thomas A.; Littrell, Daniel; Ohmacht, Martin; Reed, Don D.; Schenck, Brandon E.; Swetz, Richard A.

    2013-04-02

    A circuit generates a global clock signal with a pulse width modification to synchronize processors in a parallel computing system. The circuit may include a hardware module and a clock splitter. The hardware module may generate a clock signal and performs a pulse width modification on the clock signal. The pulse width modification changes a pulse width within a clock period in the clock signal. The clock splitter may distribute the pulse width modified clock signal to a plurality of processors in the parallel computing system.

  11. Erosion of Carbon-based spacecraft structures in LEO by Atomic Oxygen

    DEFF Research Database (Denmark)

    Jørgensen, John Leif

    1998-01-01

    Atomic oxygen is constantly generated on the topside of the atmosphere by ionizing radiation. The ionizing solar radiation, UV and particles, will on impact dissociate molecular oxygen to atomic oxygen. However, due to the ratio between the UV and the particle flux from the sun, and due to compar...

  12. Cost and Precision of Brownian Clocks

    CERN Document Server

    Barato, Andre C

    2016-01-01

    Brownian clocks are biomolecular networks that can count time. A paradigmatic example are proteins that go through a cycle thus regulating some oscillatory behaviour in a living system. Typically, such a cycle requires free energy often provided by ATP hydrolysis. We investigate the relation between the precision of such a clock and its thermodynamic costs. For clocks driven by a constant thermodynamic force, a given precision requires a minimal cost that diverges as the uncertainty of the clock vanishes. In marked contrast, we show that a clock driven by a periodic variation of an external protocol can achieve arbitrary precision at arbitrarily low cost. This result constitutes a fundamental difference between processes driven by a fixed thermodynamic force and those driven periodically. As a main technical tool, we map a periodically driven system with a deterministic protocol to one subject to an external protocol that changes in stochastic time intervals, which simplifies calculations significantly. In th...

  13. A critical comparison of coarse-grained structure-based approaches and atomic models of protein folding.

    Science.gov (United States)

    Hu, Jie; Chen, Tao; Wang, Moye; Chan, Hue Sun; Zhang, Zhuqing

    2017-05-31

    Structure-based coarse-grained Gō-like models have been used extensively in deciphering protein folding mechanisms because of their simplicity and tractability. Meanwhile, explicit-solvent molecular dynamics (MD) simulations with physics-based all-atom force fields have been applied successfully to simulate folding/unfolding transitions for several small, fast-folding proteins. To explore the degree to which coarse-grained Gō-like models and their extensions to incorporate nonnative interactions are capable of producing folding processes similar to those in all-atom MD simulations, here we systematically compare the computed unfolded states, transition states, and transition paths obtained using coarse-grained models and all-atom explicit-solvent MD simulations. The conformations in the unfolded state in common Gō models are more extended, and are thus more in line with experiment, than those from all-atom MD simulations. Nevertheless, the structural features of transition states obtained by the two types of models are largely similar. In contrast, the folding transition paths are significantly more sensitive to modeling details. In particular, when common Gō-like models are augmented with nonnative interactions, the predicted dimensions of the unfolded conformations become similar to those computed using all-atom MD. With this connection, the large deviations of all-atom MD from simple diffusion theory are likely caused in part by the presence of significant nonnative effects in folding processes modelled by current atomic force fields. The ramifications of our findings to the application of coarse-grained modeling to more complex biomolecular systems are discussed.

  14. StatSTEM: An efficient program for accurate and precise model-based quantification of atomic resolution electron microscopy images

    Science.gov (United States)

    De Backer, A.; van den Bos, K. H. W.; Van den Broek, W.; Sijbers, J.; Van Aert, S.

    2017-09-01

    An efficient model-based estimation algorithm is introduced in order to quantify the atomic column positions and intensities from atomic resolution (scanning) transmission electron microscopy ((S)TEM) images. This algorithm uses the least squares estimator on image segments containing individual columns fully accounting for the overlap between neighbouring columns, enabling the analysis of a large field of view. For this algorithm, the accuracy and precision with which measurements for the atomic column positions and scattering cross-sections from annular dark field (ADF) STEM images can be estimated, is investigated. The highest attainable precision is reached even for low dose images. Furthermore, advantages of the model-based approach taking into account overlap between neighbouring columns are highlighted. To provide end-users this well-established quantification method, a user friendly program, StatSTEM, is developed which is freely available under a GNU public license.

  15. Study on Droplet Size and Velocity Distributions of a Pressure Swirl Atomizer Based on the Maximum Entropy Formalism

    Directory of Open Access Journals (Sweden)

    Kai Yan

    2015-01-01

    Full Text Available A predictive model for droplet size and velocity distributions of a pressure swirl atomizer has been proposed based on the maximum entropy formalism (MEF. The constraint conditions of the MEF model include the conservation laws of mass, momentum, and energy. The effects of liquid swirling strength, Weber number, gas-to-liquid axial velocity ratio and gas-to-liquid density ratio on the droplet size and velocity distributions of a pressure swirl atomizer are investigated. Results show that model based on maximum entropy formalism works well to predict droplet size and velocity distributions under different spray conditions. Liquid swirling strength, Weber number, gas-to-liquid axial velocity ratio and gas-to-liquid density ratio have different effects on droplet size and velocity distributions of a pressure swirl atomizer.

  16. Evaluating the morphology of erythrocyte population: An approach based on atomic force microscopy and flow cytometry.

    Science.gov (United States)

    Ghosh, Sayari; Chakraborty, Ishita; Chakraborty, Monojit; Mukhopadhyay, Ashis; Mishra, Raghwendra; Sarkar, Debasish

    2016-04-01

    Erythrocyte morphology is gaining importance as a powerful pathological index in identifying the severity of any blood related disease. However, the existing technique of quantitative microscopy is highly time consuming and prone to personalized bias. On the other hand, relatively unexplored, complementary technique based on flow cytometry has not been standardized till date, particularly due to the lack of a proper morphological scoring scale. In this article, we have presented a new approach to formulate a non-empirical scoring scale based on membrane roughness (R(rms)) data obtained from atomic force microscopy. Subsequently, the respective morphological quantifier of the whole erythrocyte population, commonly known as morphological index, was expressed as a function of highest correlated statistical parameters of scattered signal profiles generated by flow cytometry. Feed forward artificial neural network model with multilayer perceptron architecture was used to develop the intended functional form. High correlation coefficient (R(2) = 0.95), even for model-formulation exclusive samples, clearly indicates the universal validity of the proposed model. Moreover, a direct pathological application of the proposed model has been illustrated in relation to patients, diagnosed to be suffering from a wide variety of cancer. Copyright © 2016 Elsevier B.V. All rights reserved

  17. Atomically dispersed metal sites in MOF-based materials for electrocatalytic and photocatalytic energy conversion.

    Science.gov (United States)

    Liang, Zibin; Qu, Chong; Xia, Dingguo; Zou, Ruqiang; Xu, Qiang

    2018-02-19

    Metal sites play an essential role for both electrocatalytic and photocatalytic energy conversion applications. The highly ordered arrangements of the organic linkers and metal nodes and the well-defined pore structures of metal-organic frameworks (MOFs) make them ideal substrates to support atomically dispersed metal sites (ADMSs) located in their metal nodes, linkers, and pores. Besides, porous carbon materials doped with ADMSs can be derived from these ADMS-incorporated MOF precursors through controlled treatments. These ADMSs incorporated in pristine MOFs and MOF-derived carbon materials possess unique merits over the molecular or the bulk metal-based catalysts, bridging the gap between homogeneous and heterogeneous catalysts for energy conversion applications. In this review, recent progress and perspective of design and incorporation of ADMSs in pristine MOFs and MOF-derived materials for energy conversion applications are highlighted, which will hopefully promote further developments of advanced MOF-based catalysts in foreseeable future. © 2018 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  18. [Determination of soil exchangeable base cations by using atomic absorption spectrophotometer and extraction with ammonium acetate].

    Science.gov (United States)

    Zhang, Yu-ge; Xiao, Min; Dong, Yi-hua; Jiang, Yong

    2012-08-01

    A method to determine soil exchangeable calcium (Ca), magnesium (Mg), potassium (K), and sodium (Na) by using atomic absorption spectrophotometer (AAS) and extraction with ammonium acetate was developed. Results showed that the accuracy of exchangeable base cation data with AAS method fits well with the national standard referential soil data. The relative errors for parallel samples of exchangeable Ca and Mg with 66 pair samples ranged from 0.02%-3.14% and 0.06%-4.06%, and averaged to be 1.22% and 1.25%, respectively. The relative errors for exchangeable K and Na with AAS and flame photometer (FP) ranged from 0.06%-8.39% and 0.06-1.54, and averaged to be 3.72% and 0.56%, respectively. A case study showed that the determination method for exchangeable base cations by using AAS was proven to be reliable and trustable, which could reflect the real situation of soil cation exchange properties in farmlands.

  19. Interdependence of nutrient metabolism and the circadian clock system: Importance for metabolic health

    Directory of Open Access Journals (Sweden)

    Aleix Ribas-Latre

    2016-03-01

    Major conclusions: Targeted use of specific nutrients based on chronotype has the potential for immense clinical utility in the future. Macronutrients and micronutrients have the ability to function as zeitgebers for the clock by activating or modulating specific clock proteins or accessory proteins (such as nuclear receptors. Circadian clock control by nutrients can be tissue-specific. With a better understanding of the mechanisms that support nutrient-induced circadian control in specific tissues, human chronotype and SNP information might eventually be used to tailor nutritional regimens for metabolic disease treatment and thus be an important part of personalized medicine's future.

  20. Going Vertical To Improve the Accuracy of Atomic Force Microscopy Based Single-Molecule Force Spectroscopy.

    Science.gov (United States)

    Walder, Robert; Van Patten, William J; Adhikari, Ayush; Perkins, Thomas T

    2018-01-23

    Single-molecule force spectroscopy (SMFS) is a powerful technique to characterize the energy landscape of individual proteins, the mechanical properties of nucleic acids, and the strength of receptor-ligand interactions. Atomic force microscopy (AFM)-based SMFS benefits from ongoing progress in improving the precision and stability of cantilevers and the AFM itself. Underappreciated is that the accuracy of such AFM studies remains hindered by inadvertently stretching molecules at an angle while measuring only the vertical component of the force and extension, degrading both measurements. This inaccuracy is particularly problematic in AFM studies using double-stranded DNA and RNA due to their large persistence length (p ≈ 50 nm), often limiting such studies to other SMFS platforms (e.g., custom-built optical and magnetic tweezers). Here, we developed an automated algorithm that aligns the AFM tip above the DNA's attachment point to a coverslip. Importantly, this algorithm was performed at low force (10-20 pN) and relatively fast (15-25 s), preserving the connection between the tip and the target molecule. Our data revealed large uncorrected lateral offsets for 100 and 650 nm DNA molecules [24 ± 18 nm (mean ± standard deviation) and 180 ± 110 nm, respectively]. Correcting this offset yielded a 3-fold improvement in accuracy and precision when characterizing DNA's overstretching transition. We also demonstrated high throughput by acquiring 88 geometrically corrected force-extension curves of a single individual 100 nm DNA molecule in ∼40 min and versatility by aligning polyprotein- and PEG-based protein-ligand assays. Importantly, our software-based algorithm was implemented on a commercial AFM, so it can be broadly adopted. More generally, this work illustrates how to enhance AFM-based SMFS by developing more sophisticated data-acquisition protocols.

  1. Microwave-clock timescale with instability on order of 10-17

    Science.gov (United States)

    Peil, Steven; Swanson, Thomas B.; Hanssen, James; Taylor, Jennifer

    2017-06-01

    The fundamental limits of atomic fountains as operational clocks are considered. Four rubidium fountains in operation at the US Naval Observatory for over 5.5 years have demonstrated unprecedented long-term stability for continuously running clocks (Peil et al 2014 Metrologia 51 263-9, Peil et al 2016 J. Phys.: Conf. Ser. 723 012004). With only these rubidium fountains, a post-processed timescale can be created that demonstrates superior long-term performance to any individual clock by compensating for occasional frequency steps. By comparing to the world’s primary standards we demonstrate instability of this rubidium fountain timescale reaching the mid 10-17’s and zero drift at the level of 1.3  ×  10-19 d-1. We discuss fundamental limits due to common mode behaviour or individual fountain performance that cannot be corrected.

  2. Facile encapsulation of oxide based thin film transistors by atomic layer deposition based on ozone.

    Science.gov (United States)

    Fakhri, Morteza; Babin, Nikolai; Behrendt, Andreas; Jakob, Timo; Görrn, Patrick; Riedl, Thomas

    2013-05-28

    A simplified encapsulation strategy for metal-oxide based TFTs, using ozone instead of water as an oxygen source in a low-temperature ALD process is demonstrated. Thereby, the threshold voltage remains unaltered and the hysteresis is permanently reduced. Costly energy- and time-consuming post-treatment processes can be avoided. This concept is widely applicable to various encapsulation materials (e.g., Al2 O3 , TiO2 , ZrO2 ) and metal-oxide channel semiconductors (e.g., zinc-tin-oxide (ZTO), indium-gallium-zinc-oxide (IGZO)). Copyright © 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  3. CULLIN-3 controls TIMELESS oscillations in the Drosophila circadian clock.

    Directory of Open Access Journals (Sweden)

    Brigitte Grima

    Full Text Available Eukaryotic circadian clocks rely on transcriptional feedback loops. In Drosophila, the PERIOD (PER and TIMELESS (TIM proteins accumulate during the night, inhibit the activity of the CLOCK (CLK/CYCLE (CYC transcriptional complex, and are degraded in the early morning. The control of PER and TIM oscillations largely depends on post-translational mechanisms. They involve both light-dependent and light-independent pathways that rely on the phosphorylation, ubiquitination, and proteasomal degradation of the clock proteins. SLMB, which is part of a CULLIN-1-based E3 ubiquitin ligase complex, is required for the circadian degradation of phosphorylated PER. We show here that CULLIN-3 (CUL-3 is required for the circadian control of PER and TIM oscillations. Expression of either Cul-3 RNAi or dominant negative forms of CUL-3 in the clock neurons alters locomotor behavior and dampens PER and TIM oscillations in light-dark cycles. In constant conditions, CUL-3 deregulation induces behavioral arrhythmicity and rapidly abolishes TIM cycling, with slower effects on PER. CUL-3 affects TIM accumulation more strongly in the absence of PER and forms protein complexes with hypo-phosphorylated TIM. In contrast, SLMB affects TIM more strongly in the presence of PER and preferentially associates with phosphorylated TIM. CUL-3 and SLMB show additive effects on TIM and PER, suggesting different roles for the two ubiquitination complexes on PER and TIM cycling. This work thus shows that CUL-3 is a new component of the Drosophila clock, which plays an important role in the control of TIM oscillations.

  4. Microfabricated Waveguide Atom Traps.

    Energy Technology Data Exchange (ETDEWEB)

    Jau, Yuan-Yu [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States)

    2017-09-01

    A nanoscale , microfabricated waveguide structure can in - principle be used to trap atoms in well - defined locations and enable strong photon-atom interactions . A neutral - atom platform based on this microfabrication technology will be prealigned , which is especially important for quantum - control applications. At present, there is still no reported demonstration of evanescent - field atom trapping using a microfabricated waveguide structure. We described the capabilities established by our team for future development of the waveguide atom - trapping technology at SNL and report our studies to overcome the technical challenges of loading cold atoms into the waveguide atom traps, efficient and broadband optical coupling to a waveguide, and the waveguide material for high - power optical transmission. From the atomic - physics and the waveguide modeling, w e have shown that a square nano-waveguide can be utilized t o achieve better atomic spin squeezing than using a nanofiber for first time.

  5. Atomic and molecular manipulation

    CERN Document Server

    Mayne, Andrew J

    2011-01-01

    Work with individual atoms and molecules aims to demonstrate that miniaturized electronic, optical, magnetic, and mechanical devices can operate ultimately even at the level of a single atom or molecule. As such, atomic and molecular manipulation has played an emblematic role in the development of the field of nanoscience. New methods based on the use of the scanning tunnelling microscope (STM) have been developed to characterize and manipulate all the degrees of freedom of individual atoms and molecules with an unprecedented precision. In the meantime, new concepts have emerged to design molecules and substrates having specific optical, mechanical and electronic functions, thus opening the way to the fabrication of real nano-machines. Manipulation of individual atoms and molecules has also opened up completely new areas of research and knowledge, raising fundamental questions of "Optics at the atomic scale", "Mechanics at the atomic scale", Electronics at the atomic scale", "Quantum physics at the atomic sca...

  6. Optical memory based on quantized atomic center-of-mass motion.

    Science.gov (United States)

    Lopez, J P; de Almeida, A J F; Felinto, D; Tabosa, J W R

    2017-11-01

    We report a new type of optical memory using a pure two-level system of cesium atoms cooled by the magnetically assisted Sisyphus effect. The optical information of a probe field is stored in the coherence between quantized vibrational levels of the atoms in the potential wells of a 1-D optical lattice. The retrieved pulse shows Rabi oscillations with a frequency determined by the reading beam intensity and are qualitatively understood in terms of a simple theoretical model. The exploration of the external degrees of freedom of an atom may add another capability in the design of quantum-information protocols using light.

  7. Correlative atomic force microscopy and localization-based super-resolution microscopy: revealing labelling and image reconstruction artefacts.

    Science.gov (United States)

    Monserrate, Aitor; Casado, Santiago; Flors, Cristina

    2014-03-17

    Hybrid microscopy: A correlative microscopy tool that combines in situ super-resolution fluorescence microscopy based on single-molecule localization and atomic force microscopy is presented. Direct comparison with high- resolution topography allows the authors to improve fluorescence labeling and image analysis in super-resolution imaging. © 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  8. Development Of Beam Position And Profile Monitor Based On Light Radiation Of Atoms Excited By The Beam Particles

    CERN Document Server

    Balalykin, N I; Brovko, O I; Bykovsky, V F; Dietrich, J; Kamerdzhiev, V; Meshkov, I N; Mohos, I; Parfenov, A N

    2004-01-01

    Particle beam position and profile monitor based on registration of the light radiated by residual gas atoms is being developed by collaboration JINR-Forschungszentrum Jülich. Proposed device and first experiments have been performed at Nuclotron (JINR) and COSY (FZJ) accelerators are presented in this report.

  9. Mobile setup for synchrotron based in situ characterization during thermal and plasma-enhanced atomic layer deposition

    NARCIS (Netherlands)

    Dendooven, Jolien; Solano, Eduardo; Minjauw, Matthias M; Van de Kerckhove, Kevin; Coati, Alessandro; Fonda, Emiliano; Portale, Giuseppe; Garreau, Yves; Detavernier, Christophe

    2016-01-01

    We report the design of a mobile setup for synchrotron based in situ studies during atomic layer processing. The system was designed to facilitate in situ grazing incidence small angle x-ray scattering (GISAXS), x-ray fluorescence (XRF), and x-ray absorption spectroscopy measurements at synchrotron

  10. Circadian clocks are designed optimally

    CERN Document Server

    Hasegawa, Yoshihiko

    2014-01-01

    Circadian rhythms are acquired through evolution to increase the chances for survival by synchronizing to the daylight cycle. Reliable synchronization is realized through two trade-off properties: regularity to keep time precisely, and entrainability to synchronize the internal time with daylight. Since both properties have been tuned through natural selection, their adaptation can be formalized in the framework of mathematical optimization. By using a succinct model, we found that simultaneous optimization of regularity and entrainability entails inherent features of the circadian mechanism irrespective of model details. At the behavioral level we discovered the existence of a dead zone, a time during which light pulses neither advance nor delay the clock. At the molecular level we demonstrate the role-sharing of two light inputs, phase advance and delay, as is well observed in mammals. We also reproduce the results of phase-controlling experiments and predict molecular elements responsible for the clockwork...

  11. Fabrication of large scale nanostructures based on a modified atomic force microscope nanomechanical machining system.

    Science.gov (United States)

    Hu, Z J; Yan, Y D; Zhao, X S; Gao, D W; Wei, Y Y; Wang, J H

    2011-12-01

    The atomic force microscope (AFM) tip-based nanomechanical machining has been demonstrated to be a powerful tool for fabricating complex 2D∕3D nanostructures. But the machining scale is very small, which holds back this technique severely. How to enlarge the machining scale is always a major concern for the researches. In the present study, a modified AFM tip-based nanomechanical machining system is established through combination of a high precision X-Y stage with the moving range of 100 mm × 100 mm and a commercial AFM in order to enlarge the machining scale. It is found that the tracing property of the AFM system is feasible for large scale machining by controlling the constant normal load. Effects of the machining parameters including the machining direction and the tip geometry on the uniform machined depth with a large scale are evaluated. Consequently, a new tip trace and an increasing load scheme are presented to achieve a uniform machined depth. Finally, a polymer nanoline array with the dimensions of 1 mm × 0.7 mm, the line density of 1000 lines/mm and the average machined depth of 150 nm, and a 20 × 20 polymer square holes array with the scale of 380 μm × 380 μm and the average machined depth of 250 nm are machined successfully. The uniform of the machined depths for all the nanostructures is acceptable. Therefore, it is verified that the AFM tip-based nanomechanical machining method can be used to machine millimeter scale nanostructures.

  12. Improved zero-order fringe positioning algorithms in white light interference based atomic force microscopy

    Science.gov (United States)

    Hu, Chi; Liu, Xiaojun; Yang, Wenjun; Lu, Wenlong; Yu, Nengguo; Chang, Suping

    2018-01-01

    In white light interference based atomic force microscopy (WLIAFM), the vertical displacement of the probe is obtained by zero-order fringe positioning on the probe cantilever, so the accuracy of zero-order fringe positioning will affect directly that of the WLIAFM. However, due to non-uniform distribution of light intensity and photoelectric noises, accurate zero-order fringe positioning becomes a problem. In this paper, two algorithms are proposed to improve the zero-order fringe positioning accuracy. In the first algorithm which is called improved maximum algorithm, multi-row maximum positions of the interference fringes are obtained and error theory is applied to eliminate erroneous maximum positions, then the average of remaining maximum positions is used as the zero-order fringe position. Another is called phase evaluation algorithm, in which wavelet transform is applied to eliminate effects from disturbances mentioned above and Hilbert transform is used for phase evaluation to obtain the zero-order fringe position. The practicability and accuracy of the two algorithms have been verified by series of experiments. The experiment results indicate that both two algorithms are suitable in this condition and the phase evaluation algorithm has higher accuracy while the improved maximum algorithm has higher processing speed.

  13. Role of atomic layer deposited aluminum oxide as oxidation barrier for silicon based materials

    Energy Technology Data Exchange (ETDEWEB)

    Fiorentino, Giuseppe, E-mail: g.fiorentino@tudelft.nl; Morana, Bruno [Department of Microelectronic, Delft University of Technology, Feldmannweg 17, 2628 CT Delft (Netherlands); Forte, Salvatore [Department of Electronic, University of Naples Federico II, Piazzale Tecchio, 80125 Napoli (Italy); Sarro, Pasqualina Maria [Department of Microelectronic, Delft University of Technology, Feldmannweg 17, 2628 CT, Delft (Netherlands)

    2015-01-15

    In this paper, the authors study the protective effect against oxidation of a thin layer of atomic layer deposited (ALD) aluminum oxide (Al{sub 2}O{sub 3}). Nitrogen doped silicon carbide (poly-SiC:N) based microheaters coated with ALD Al{sub 2}O{sub 3} are used as test structure to investigate the barrier effect of the alumina layers to oxygen and water vapor at very high temperature (up to 1000 °C). Different device sets have been fabricated changing the doping levels, to evaluate possible interaction between the dopants and the alumina layer. The as-deposited alumina layer morphology has been evaluated by means of AFM analysis and compared to an annealed sample (8 h at 1000 °C) to estimate the change in the grain structure and the film density. The coated microheaters are subjected to very long oxidation time in dry and wet environment (up to 8 h at 900 and 1000 °C). By evaluating the electrical resistance variation between uncoated reference devices and the ALD coated devices, the oxide growth on the SiC is estimated. The results show that the ALD alumina coating completely prevents the oxidation of the SiC up to 900 °C in wet environment, while an oxide thickness reduction of 50% is observed at 1000 °C compared to uncoated devices.

  14. Physics-based all-atom modeling of RNA energetics and structure.

    Science.gov (United States)

    Smith, Louis G; Zhao, Jianbo; Mathews, David H; Turner, Douglas H

    2017-09-01

    The database of RNA sequences is exploding, but knowledge of energetics, structures, and dynamics lags behind. All-atom computational methods, such as molecular dynamics, hold promise for closing this gap. New algorithms and faster computers have accelerated progress in improving the reliability and accuracy of predictions. Currently, the methods can facilitate refinement of experimentally determined nuclear magnetic resonance and x-ray structures, but are 'unreliable' for predictions based only on sequence. Much remains to be discovered, however, about the many molecular interactions driving RNA folding and the best way to approximate them quantitatively. The large number of parameters required means that a wide variety of experimental results will be required to benchmark force fields and different approaches. As computational methods become more reliable and accessible, they will be used by an increasing number of biologists, much as x-ray crystallography has expanded. Thus, many fundamental physical principles underlying the computational methods are described. This review presents a summary of the current state of molecular dynamics as applied to RNA. It is designed to be helpful to students, postdoctoral fellows, and faculty who are considering or starting computational studies of RNA. WIREs RNA 2017, 8:e1422. doi: 10.1002/wrna.1422. © 2017 Wiley Periodicals, Inc.

  15. Compact metal probes: a solution for atomic force microscopy based tip-enhanced Raman spectroscopy.

    Science.gov (United States)

    Rodriguez, R D; Sheremet, E; Müller, S; Gordan, O D; Villabona, A; Schulze, S; Hietschold, M; Zahn, D R T

    2012-12-01

    There are many challenges in accomplishing tip-enhanced Raman spectroscopy (TERS) and obtaining a proper tip is probably the greatest one. Since tip size, composition, and geometry are the ultimate parameters that determine enhancement of intensity and lateral resolution, the tip becomes the most critical component in a TERS experiment. However, since the discovery of TERS the cantilevers used in atomic force microscopy (AFM) have remained basically the same: commercial silicon (or silicon nitride) tips covered by a metallic coating. The main issues of using metal-coated silicon cantilevers, such as wearing off of the metal layer or increased tip radius, can be completely overcome by using all-metal cantilevers. Until now in TERS experiments such probes have only been used in a scanning tunneling microscope or in a tuning fork-based shear force microscope but not in AFM. In this work for the first time, we show the use of compact silver cantilevers that are fully compatible with contact and tapping modes in AFM demonstrating their superb performance in TERS experiments.

  16. Mechanical characterization of polymeric thin films by atomic force microscopy based techniques.

    Science.gov (United States)

    Passeri, Daniele; Rossi, Marco; Tamburri, Emanuela; Terranova, Maria Letizia

    2013-02-01

    Polymeric thin films have been awakening continuous and growing interest for application in nanotechnology. For such applications, the assessment of their (nano)mechanical properties is a key issue, since they may dramatically vary between the bulk and the thin film state, even for the same polymer. Therefore, techniques are required for the in situ characterization of mechanical properties of thin films that must be nondestructive or only minimally destructive. Also, they must also be able to probe nanometer-thick ultrathin films and layers and capable of imaging the mechanical properties of the sample with nanometer lateral resolution, since, for instance, at these scales blends or copolymers are not uniform, their phases being separated. Atomic force microscopy (AFM) has been proposed as a tool for the development of a number of techniques that match such requirements. In this review, we describe the state of the art of the main AFM-based methods for qualitative and quantitative single-point measurements and imaging of mechanical properties of polymeric thin films, illustrating their specific merits and limitations.

  17. Terahertz response of fractal meta-atoms based on concentric rectangular square resonators

    Energy Technology Data Exchange (ETDEWEB)

    Song, Zhiqiang; Zhao, Zhenyu, E-mail: zyzhao@shnu.edu.cn; Shi, Wangzhou [Department of Physics, Shanghai Normal University, Shanghai 200234 (China); Peng, Wei [State Key Laboratory of Functional Materials for Informatics, Shanghai Institute of Microsystem and Information Technology, Chinese Academy of Sciences, Shanghai 200050 (China)

    2015-11-21

    We investigate the terahertz electromagnetic responses of fractal meta-atoms (MAs) induced by different mode coupling mechanisms. Two types of MAs based on concentric rectangular square (CRS) resonators are presented: independent CRS (I-CRS) and junctional-CRS (J-CRS). In I-CRS, each resonator works as an independent dipole so as to result in the multiple resonance modes when the fractal level is above 1. In J-CRS, however, the generated layer is rotated by π/2 radius to the adjacent CRS in one MA. The multiple resonance modes are coupled into a single mode resonance. The fractal level increasing induces resonance modes redshift in I-CRS while blueshift in J-CRS. When the fractal level is below 4, the mode Q factor of J-CRS is in between the two modes of I-CRS; when the fractal level is 4 or above, the mode Q factor of J-CRS exceeds the two modes of I-CRS. Furthermore, the modulation depth (MD) decreases in I-CRS while it increases in J-CRS with the increase in fractal levels. The surface currents analysis reveals that the capacitive coupling of modes in I-CRS results in the modes redshift, while the conductive coupling of modes in J-CRS induces the mode blueshift. A high Q mode with large MD can be achieved via conductive coupling between the resonators of different scales in a fractal MA.

  18. Intelligent tuning method of PID parameters based on iterative learning control for atomic force microscopy.

    Science.gov (United States)

    Liu, Hui; Li, Yingzi; Zhang, Yingxu; Chen, Yifu; Song, Zihang; Wang, Zhenyu; Zhang, Suoxin; Qian, Jianqiang

    2018-01-01

    Proportional-integral-derivative (PID) parameters play a vital role in the imaging process of an atomic force microscope (AFM). Traditional parameter tuning methods require a lot of manpower and it is difficult to set PID parameters in unattended working environments. In this manuscript, an intelligent tuning method of PID parameters based on iterative learning control is proposed to self-adjust PID parameters of the AFM according to the sample topography. This method gets enough information about the output signals of PID controller and tracking error, which will be used to calculate the proper PID parameters, by repeated line scanning until convergence before normal scanning to learn the topography. Subsequently, the appropriate PID parameters are obtained by fitting method and then applied to the normal scanning process. The feasibility of the method is demonstrated by the convergence analysis. Simulations and experimental results indicate that the proposed method can intelligently tune PID parameters of the AFM for imaging different topographies and thus achieve good tracking performance. Copyright © 2017 Elsevier Ltd. All rights reserved.

  19. [Efficiency of hemoperfusion on clearing thallium based on atomic absorption spectrometry].

    Science.gov (United States)

    Tian, Tian; Wang, Yongan; Nie, Zhiyong; Wang, Jiao; Peng, Xiaobo; Yuan, Ye; Li, Wanhua; Qiu, Zewu; Xue, Yanping; Xiong, Yiru

    2015-04-01

    To determine thallium in whole blood by atomic absorption detection method, and to investigate the eliminating effect of hemoperfusion (HP) for thallium in blood. The blood of Beagle dogs which had not exposed to thallium before were obtained for preparation of thallium nitrate ( TlNO3 )-containing solution in three concentrations according to the conversion formula based on animal weight and volume of blood. HP was performed in the simulated in vivo environment. The content of TlNO3 in blood of the next group was determined on the amount of TlNO3 for the last HP of the former dose group. Thallium quantity in different samples was measured with atomic absorption spectrometer blood samples before and after HP. Finally, the thallium concentration in blood was analyzed statistically. Thallium concentrations showed a good linear relationship in the range of 0-200 μg/L (r = 0.998 4). The intra-day precision (RSD) was lower than 4.913%, the intra-day recovery rate was 96.2%-111.9%; the inter-day precision (RSD) was lower than 7.502%, the inter-day recovery rate was 89.6%-105.2%. The concentration of thallium in blood was significantly reduced after HP per time in high, middle, and low dose groups [(453.43 ± 27.80) mg/L to (56.09 ± 14.44) mg/L in high dose group, F = 8.820, P = 0.003; (64.51 ± 13.60) mg/L to (3.19 ± 0.23) mg/L in middle dose group, F = 36.312, P = 0.000; (5.40 ± 0.98) mg/L to (0.38 ± 0.25) mg/L in low dose group, F = 46.240, P = 0.000 ]. The adsorption rate of four times of HP in high, middle and low dose group were (87.63 ± 2.48 )%, (95.06 ± 1.54 )% and (92.76 ± 4.87)%, respectively, without significant difference (F = 4.231, P = 0.070). The method for measuring thallium was established, and it shows a very stable, simple, sensitive for determination of thallium. HP can effectively remove thallium from blood. Thallium concentration can be reduced by 90% after four times of HP. HP is also effective even when thallium concentration is not high.

  20. Evaluation of Long Term Performance of Continuously Running Atomic Fountains

    Science.gov (United States)

    2014-05-28

    accurate frequency standards, cold-atom clocks (optical or microwave) find application in frequency metrology [2], precise tests of fundamental symmetries...Dick effect does not improve the stability greatly, while using a single LO for different fountains increases risk significantly. This increase in...operational risk led us to abandon this technique. As confidence in the reliability of the fountains has been gained, the clocks are now being used

  1. High power laser source for atom cooling based on reliable telecoms technology with all fibre frequency stabilisation

    Science.gov (United States)

    Legg, Thomas; Farries, Mark

    2017-02-01

    Cold atom interferometers are emerging as important tools for metrology. Designed into gravimeters they can measure extremely small changes in the local gravitational field strength and be used for underground surveying to detect buried utilities, mineshafts and sinkholes prior to civil works. To create a cold atom interferometer narrow linewidth, frequency stabilised lasers are required to cool the atoms and to setup and measure the atom interferometer. These lasers are commonly either GaAs diodes, Ti Sapphire lasers or frequency doubled InGaAsP diodes and fibre lasers. The InGaAsP DFB lasers are attractive because they are very reliable, mass-produced, frequency controlled by injection current and simply amplified to high powers with fibre amplifiers. In this paper a laser system suitable for Rb atom cooling, based on a 1560nm DFB laser and erbium doped fibre amplifier, is described. The laser output is frequency doubled with fibre coupled periodically poled LiNbO3 to a wavelength of 780nm. The output power exceeds 1 W at 780nm. The laser is stabilised at 1560nm against a fibre Bragg resonator that is passively temperature compensated. Frequency tuning over a range of 1 GHz is achieved by locking the laser to sidebands of the resonator that are generated by a phase modulator. This laser design is attractive for field deployable rugged systems because it uses all fibre coupled components with long term proven reliability.

  2. The circadian clock regulates inflammatory arthritis.

    Science.gov (United States)

    Hand, Laura E; Hopwood, Thomas W; Dickson, Suzanna H; Walker, Amy L; Loudon, Andrew S I; Ray, David W; Bechtold, David A; Gibbs, Julie E

    2016-11-01

    There is strong diurnal variation in the symptoms and severity of chronic inflammatory diseases, such as rheumatoid arthritis. In addition, disruption of the circadian clock is an aggravating factor associated with a range of human inflammatory diseases. To investigate mechanistic links between the biological clock and pathways underlying inflammatory arthritis, mice were administered collagen (or saline as a control) to induce arthritis. The treatment provoked an inflammatory response within the limbs, which showed robust daily variation in paw swelling and inflammatory cytokine expression. Inflammatory markers were significantly repressed during the dark phase. Further work demonstrated an active molecular clock within the inflamed limbs and highlighted the resident inflammatory cells, fibroblast-like synoviocytes (FLSs), as a potential source of the rhythmic inflammatory signal. Exposure of mice to constant light disrupted the clock in peripheral tissues, causing loss of the nighttime repression of local inflammation. Finally, the results show that the core clock proteins cryptochrome (CRY) 1 and 2 repressed inflammation within the FLSs, and provide novel evidence that a CRY activator has anti-inflammatory properties in human cells. We conclude that under chronic inflammatory conditions, the clock actively represses inflammatory pathways during the dark phase. This interaction has exciting potential as a therapeutic avenue for treatment of inflammatory disease.-Hand, L. E., Hopwood, T. W., Dickson, S. H., Walker, A. L., Loudon, A. S. I., Ray, D. W., Bechtold, D. A., Gibbs, J. E. The circadian clock regulates inflammatory arthritis. © The Author(s).

  3. Time clock requirements for hospital physicians.

    Science.gov (United States)

    Shapira, Chen; Vilnai-Yavetz, Iris; Rafaeli, Anat; Zemel, Moran

    2016-06-01

    An agreement negotiated following a doctors' strike in 2011 introduced a requirement that physicians in Israel's public hospitals clock in and out when starting and leaving work. The press reported strong negative reactions to this policy and predicted doctors deserting hospitals en masse. This study examines physicians' reactions toward the clock-in/clock-out policy 6 months after its implementation, and assesses the relationship between these reactions and aspects of their employment context. 676 physicians in 42 hospitals responded to a survey assessing doctor's reactions toward the clock, hospital policy makers, and aspects of their work. Reactions to the clock were generally negative. Sense of calling correlated positively with negative reactions to the clock, and the latter correlated positively with quit intentions. However, overall, respondents reported a high sense of calling and low quit intentions. We suggest that sense of calling buffers and protects physicians from quit intentions. Differences in reactions to the clock were associated with different employment characteristics, but sense of calling did not vary by hospital size or type or by physicians' specialty. The findings offer insights into how physicians' working environment affects their reactions to regulatory interventions, and highlight medical professionalism as buffering reactions to unpopular regulatory policies. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.

  4. Phylogenetic footprint of the plant clock system in angiosperms: evolutionary processes of Pseudo-Response Regulators

    Directory of Open Access Journals (Sweden)

    Saito Shigeru

    2010-05-01

    Full Text Available Abstract Background Plant circadian clocks regulate many photoperiodic and diurnal responses that are conserved among plant species. The plant circadian clock system has been uncovered in the model plant, Arabidopsis thaliana, using genetics and systems biology approaches. However, it is still not clear how the clock system had been organized in the evolutionary history of plants. We recently revealed the molecular phylogeny of LHY/CCA1 genes, one of the essential components of the clock system. The aims of this study are to reconstruct the phylogenetic relationships of angiosperm clock-associated PRR genes, the partner of the LHY/CCA1 genes, and to clarify the evolutionary history of the plant clock system in angiosperm lineages. Results In the present study, to investigate the molecular phylogeny of PRR genes, we performed two approaches: reconstruction of phylogenetic trees and examination of syntenic relationships. Phylogenetic analyses revealed that PRR genes had diverged into three clades prior to the speciation of monocots and eudicots. Furthermore, copy numbers of PRR genes have been independently increased in monocots and eudicots as a result of ancient chromosomal duplication events. Conclusions Based on the molecular phylogenies of both PRR genes and LHY/CCA1 genes, we inferred the evolutionary process of the plant clock system in angiosperms. This scenario provides evolutionary information that a common ancestor of monocots and eudicots had retained the basic components required for reconstructing a clock system and that the plant circadian clock may have become a more elaborate mechanism after the speciation of monocots and eudicots because of the gene expansion that resulted from polyploidy events.

  5. Timing of molt of barn swallows is delayed in a rare Clock genotype

    Directory of Open Access Journals (Sweden)

    Nicola Saino

    2013-02-01

    Full Text Available Photoperiodic responses are major factors entraining circannual life-cycles, functioning to adaptively synchronize annual routines to seasonal fluctuations in ecological conditions. Photoperiodism in physiology and behaviour is enforced by genes, including the vertebrate Clock orthologues, which are associated, for example, with phenology of migration in fish and breeding in birds. However, the role of Clock in photoperiodic plumage molt processes is unknown. We analyzed variation in molt schedules in relation to Clock genotype, using the long-distance migratory barn swallow (Hirundo rustica as a model and by identifying males and females using molecular sexing techniques. Consistently with previous studies, we found one very common (Q7 and two rare (Q6, Q8 variants of a functionally significant Clock polyglutamine repeat. Molt schedules of primary wing feathers of swallows during their wintering period in Nigeria differed among Clock genotypes: rare (1.1% Q7/Q8 heterozygotes had significantly delayed molt compared to the other genotypes. Molt schedules did not differ between males and females, and no differential association between molt and Clock in relation to sex emerged. The same rare Clock genotype that exhibited delayed breeding in Europe was here found to delay molt in Africa. Though based on a limited number of Q7/Q8 individuals from an otherwise very large sample, these novel results suggest that Clock is involved in the photoperiodic control of both molt and breeding, potentially also via reciprocal carry-over effects. If confirmed in species with higher Clock polymorphism, present results may have far-reaching consequences for the study of photoperiodic control of molt and expression of annual routines.

  6. Structural influence on atomic hopping and electronic states of Pd-based bulk metallic glasses

    OpenAIRE

    Tang, X.-P.; Löffler, Jörg F.; Schwarz, R. B.; Johnson, William L.; Wu, Yue

    2005-01-01

    Atomic motion and electronic structures of Pd–Ni–Cu–P bulk metallic glasses were investigated using 31P nuclear magnetic resonance. The hopping rate of P atoms was determined by the stimulated echo technique. Significant hopping was observed in all alloys well below the glass transition temperature. Increasing the Cu content to above 25 at. % increases P hopping significantly, consistent with the previous finding that the openness of the structure increases with Cu content. In contrast, P h...

  7. Quantum gates in mesoscopic atomic ensembles based on adiabatic passage and Rydberg blockade

    OpenAIRE

    Beterov, I. I.; Saffman, M.; Yakshina, E. A.; Zhukov, V. P.; Tretyakov, D. B.; Entin, V. M.; Ryabtsev, I. I.; Mansell, C. W.; MacCormick, C.; Bergamini, S.; Fedoruk, M. P.

    2012-01-01

    We present schemes for geometric phase compensation in adiabatic passage which can be used for the implementation of quantum logic gates with atomic ensembles consisting of an arbitrary number of strongly interacting atoms. Protocols using double sequences of stimulated Raman adiabatic passage (STIRAP) or adiabatic rapid passage (ARP) pulses are analyzed. Switching the sign of the detuning between two STIRAP sequences, or inverting the phase between two ARP pulses, provides state transfer wit...

  8. Atomic layer deposition of tantalum nitride based thin films from cyclopentadienyl type precursor

    Energy Technology Data Exchange (ETDEWEB)

    Anacleto, A. Correia, E-mail: anthony.correia@airliquide.co [Air Liquide, Centre de Recherche Claude Delorme, 1, chemin de la porte des loges - Les Loges en Josas - BP 126, 78354 Jouy en Josas Cedex (France); Zauner, A.; Cany-Canian, D. [Air Liquide, Centre de Recherche Claude Delorme, 1, chemin de la porte des loges - Les Loges en Josas - BP 126, 78354 Jouy en Josas Cedex (France); Gatineau, J. [Air Liquide, Air Liquide Laboratories, 28 Wadai, Tsukuba-shi, Ibaraki-Pref. 300-4247 (Japan); Hugon, M.-C. [Laboratoire de Physique des Gaz et Plasmas, UMR 8578, CNRS - Universite Paris Sud 11, 15, rue Georges Clemenceau, 91405 Orsay Cedex (France)

    2010-10-29

    Tantalum nitride based thin films have been deposited on p-Si (100) and SiO{sub 2}/Si by thermal Atomic Layer Deposition (ALD) using either the Ta(= N{sup t}Bu)(NEt{sub 2}){sub 3} or a derivative, in which one dialkylamido ligand is substituted by a {eta}{sup 5}-cyclopentadienyl ({eta}{sup 5}-Cp), as metal organic precursors with ammonia as reducing agent. TaN{sub x}C{sub y} self-limiting temperature dependent ALD growth was achieved for the TaCp(= N{sup t}Bu)(NEt{sub 2}){sub 2}/NH{sub 3} process with a growth rate of 0.51-0.91 A cycle{sup -1} in the 400-425 {sup o}C temperature range while between 240 and 280 {sup o}C, the growth of TaN based films from the Ta(= N{sup t}Bu)(NEt{sub 2}){sub 3} was accompanied by a partial decomposition of the precursor. The {eta}{sup 5}-cyclopentadienyl type compound allows lower nitrogen content in the precursor and thereafter in the deposited film. Although N/Ta ratio is close to one at temperatures of 390 and 400 {sup o}C, as analyzed by Rutherford Back Scattering and Nuclear Reaction Analysis, films were amorphous independently of the deposition temperature. Since Ta-C bonds are present in the Cp derivative, the TaCp(= N{sup t}Bu)(NEt{sub 2}){sub 2} tends more likely to form tantalum carbide compared to Ta(= N{sup t}Bu)(NEt{sub 2}){sub 3}, which leads to lower thin film resistivity. For both precursors, employed in their respective ALD window, films were smooth with a root-mean-square roughness close to 1 nm.

  9. Laser Cooling and Trapping of Neutral Mercury Atoms Using an Optically-Pumped External-Cavity Semiconductor Laser

    Science.gov (United States)

    Paul, Justin; Lytle, Christian; Jones, R. Jason

    2011-05-01

    The level structure of the Hg atom is similar to other alkaline earth-like atoms, offering the possibility to realize an extremely high quality resonance factor (Q) on the ``clock'' transition (1S0- 3P0) when confined in an optical lattice at the Stark-shift free wavelength. A key feature of the Hg system is the reduced uncertainty due to black-body induced Stark shifts, making it an interesting candidate as an optical frequency standard. One challenge to laser-cooling neutral Hg atoms is finding a reliable source for cooling on the 1S0-3 P1 transition at 253.7 nm. We employ an optically pumped semiconductor laser (OPSEL) operating at 1015 nm, whose frequency is quadrupled in two external-cavity doubling stages to generate over 120 mW at 253.7 nm. With this new laser source we have trapped Hg199 from a background vapor in a standard MOT. We trap up to 2 × 106 atoms with a 1/e2 radius of our MOT of ~310 microns, corresponding to a density of 1.28 × 1010 atoms/cm3. We report on the progress of our Hg system and plans for precision lattice-based spectroscopy of the clock transition. Support for this work is supported through the U.S. Air Force Office of Scientific Research (AFOSR) through grant no. FA9550-09-1-0563.

  10. Measurement noise 100 times lower than the quantum-projection limit using entangled atoms

    Science.gov (United States)

    Hosten, Onur; Engelsen, Nils J.; Krishnakumar, Rajiv; Kasevich, Mark A.

    2016-01-01

    Quantum metrology uses quantum entanglement—correlations in the properties of microscopic systems—to improve the statistical precision of physical measurements. When measuring a signal, such as the phase shift of a light beam or an atomic state, a prominent limitation to achievable precision arises from the noise associated with the counting of uncorrelated probe particles. This noise, commonly referred to as shot noise or projection noise, gives rise to the standard quantum limit (SQL) to phase resolution. However, it can be mitigated down to the fundamental Heisenberg limit by entangling the probe particles. Despite considerable experimental progress in a variety of physical systems, a question that persists is whether these methods can achieve performance levels that compare favourably with optimized conventional (non-entangled) systems. Here we demonstrate an approach that achieves unprecedented levels of metrological improvement using half a million 87Rb atoms in their ‘clock’ states. The ensemble is 20.1 ± 0.3 decibels (100-fold) spin-squeezed via an optical-cavity-based measurement. We directly resolve small microwave-induced rotations 18.5 ± 0.3 decibels (70-fold) beyond the SQL. The single-shot phase resolution of 147 microradians achieved by the apparatus is better than that achieved by the best engineered cold atom sensors despite lower atom numbers. We infer entanglement of more than 680 ± 35 particles in the atomic ensemble. Applications include atomic clocks, inertial sensors, and fundamental physics experiments such as tests of general relativity or searches for electron electric dipole moment. To this end, we demonstrate an atomic clock measurement with a quantum enhancement of 10.5 ± 0.3 decibels (11-fold), limited by the phase noise of our microwave source.

  11. Transcripts from the Circadian Clock: Telling Time and Season

    NARCIS (Netherlands)

    K. Brand (Karl)

    2011-01-01

    textabstractWe all know it when we wake mere moments before an alarm clock is scheduled to wake us: our body clock made the alarm clock redundant. This phenomenon is driven by an endogenous timer known as the biological, or circadian clock. Each revolution of the Earth about its own axis produces

  12. Cancellation of Collisional Frequency Shifts in Optical Lattice Clocks with Rabi Spectroscopy

    OpenAIRE

    Lee, Sangkyung; Park, Chang Yong; Lee, Won-Kyu; Yu, Dai-Hyuk

    2015-01-01

    We analyze both the s- and p-wave collision induced frequency shifts and propose a over-$\\pi$ pulse scheme to cancel the shifts in optical lattice clocks interrogated by a Rabi pulse. The collisional frequency shifts are analytically solved as a function of the pulse area and the inhomogeneity of the Rabi frequencies. Experimentally measured collisional frequency shifts in an Yb optical lattice clock are in good agreement with the analytical calculations. Based on our analysis, the over-$\\pi$...

  13. Atomic rivals

    Energy Technology Data Exchange (ETDEWEB)

    Goldschmidt, B.

    1990-01-01

    This book is a memoir of rivalries among the Allies over the bomb, by a participant and observer. Nuclear proliferation began in the uneasy wartime collaboration of the United States, England, Canada, and Free France to produce the atom bomb. Through the changes of history, a young French chemist had a role in almost every act of this international drama. This memoir is based on Goldschmidt's own recollections, interviews with other leading figures, and 3,000 pages of newly declassified documents in Allied archives. From his own start as Marie Curie's lab assistant, Goldschmidt's career was closely intertwined with Frances complicated rise to membership in the nuclear club. As a refugee from the Nazis, he became part of the wartime nuclear energy project in Canada and found himself the only French scientist to work (although briefly) on the American atom bomb project.

  14. Clock Drawing in Spatial Neglect: A Comprehensive Analysis of Clock Perimeter, Placement, and Accuracy

    Science.gov (United States)

    Chen, Peii; Goedert, Kelly M.

    2012-01-01

    Clock drawings produced by right-brain-damaged (RBD) individuals with spatial neglect often contain an abundance of empty space on the left while numbers and hands are placed on the right. However, the clock perimeter is rarely compromised in neglect patients’ drawings. By analyzing clock drawings produced by 71 RBD and 40 healthy adults, this study investigated whether the geometric characteristics of the clock perimeter reveal novel insights to understanding spatial neglect. Neglect participants drew smaller clocks than either healthy or non-neglect RBD participants. While healthy participants’ clock perimeter was close to circular, RBD participants drew radially extended ellipses. The mechanisms for these phenomena were investigated by examining the relation between clock-drawing characteristics and performance on six subtests of the Behavioral Inattention Test (BIT). The findings indicated that the clock shape was independent of any BIT subtest or the drawing placement on the test sheet and that the clock size was significantly predicted by one BIT subtest: the poorer the figure and shape copying, the smaller the clock perimeter. Further analyses revealed that in all participants, clocks decreased in size as they were placed farther from the center of the paper. However, even when neglect participants placed their clocks towards the center of the page, they were smaller than those produced by healthy or non-neglect RBD participants. These results suggest a neglect-specific reduction in the subjectively available workspace for graphic production from memory, consistent with the hypothesis that neglect patients are impaired in the ability to enlarge the attentional aperture. PMID:22390278

  15. GPS satellite clock error estimation for real time PPP and the assessment of position quality

    Science.gov (United States)

    Galera Monico, J. F.; Marques, H. A.

    2012-12-01

    Real time PPP method requires the availability of real time precise orbits and corrections or errors of the satellites clocks. Currently, it is possible to use the predicted IGU ephemerides available by the IGS centers. However, the satellites clocks corrections available in the IGU do not present enough accuracy (3 ns or 0.9 m) to accomplish real time PPP with centimeter accuracy. Therefore, it is necessary to develop appropriate methodologies for estimating the satellite clock corrections in real time with better quality. The estimation of satellite clock corrections can be carried out based on a GNSS network of reference and performing the adjustment in a combined PPP mode. Thus, all systematic effects involved with the GNSS satellite signals must be modeled appropriately for each station of the network. Once the corrections of the satellite clocks are estimated in real time, they should be sent to the users, which will use them for application in the GNSS data processing from a particular station also in real time PPP mode. To achieve such aim, a system composed by two software's, one for estimating the satellite clock corrections based on data from a GNSS network and the other for the realization of the real time PPP was developed. The results were generated in real time and post-processed mode (simulating real time). The estimate of the satellites clocks corrections was generated based on the measurements of the pseudorange smoothed by carrier phase and also using the original pseudorange and carrier phase with ambiguities estimation for each satellite available at each station. The daily accuracy of the estimated satellite clock corrections reached the order of 0.15 ns (0,05 m) and the application in the GNSS positioning shows that is possible now to accomplish real time PPP in the kinematic mode with accuracy of the order of 10 to 20 cm.

  16. Atomic orbital-based SOS-MP2 with tensor hypercontraction. II. Local tensor hypercontraction

    Science.gov (United States)

    Song, Chenchen; Martínez, Todd J.

    2017-01-01

    In the first paper of the series [Paper I, C. Song and T. J. Martinez, J. Chem. Phys. 144, 174111 (2016)], we showed how tensor-hypercontracted (THC) SOS-MP2 could be accelerated by exploiting sparsity in the atomic orbitals and using graphical processing units (GPUs). This reduced the formal scaling of the SOS-MP2 energy calculation to cubic with respect to system size. The computational bottleneck then becomes the THC metric matrix inversion, which scales cubically with a large prefactor. In this work, the local THC approximation is proposed to reduce the computational cost of inverting the THC metric matrix to linear scaling with respect to molecular size. By doing so, we have removed the primary bottleneck to THC-SOS-MP2 calculations on large molecules with O(1000) atoms. The errors introduced by the local THC approximation are less than 0.6 kcal/mol for molecules with up to 200 atoms and 3300 basis functions. Together with the graphical processing unit techniques and locality-exploiting approaches introduced in previous work, the scaled opposite spin MP2 (SOS-MP2) calculations exhibit O(N2.5) scaling in practice up to 10 000 basis functions. The new algorithms make it feasible to carry out SOS-MP2 calculations on small proteins like ubiquitin (1231 atoms/10 294 atomic basis functions) on a single node in less than a day.

  17. Specific Adaptation of Gas Atomization Processing for Al-Based Alloy Powder for Additive Manufacturing

    Energy Technology Data Exchange (ETDEWEB)

    Anderson, Iver [Ames Lab., Ames, IA (United States); Siemon, John [Alcoa, Inc, Pittsburgh, PA (United States)

    2017-06-30

    The initial three atomization attempts resulted in “freeze-outs” within the pour tubes in the pilot-scale system and yielded no powder. Re-evaluation of the alloy liquidus temperatures and melting characteristics, in collaboration with Alcoa, showed further superheat to be necessary to allow the liquid metal to flow through the pour tube to the atomization nozzle. A subsequent smaller run on the experimental atomization system verified these parameters and was successful, as were all successive runs on the larger pilot scale system. One alloy composition froze-out part way through the atomization on both pilot scale runs. SEM images showed needle formation and phase segregations within the microstructure. Analysis of the pour tube freeze-out microstructures showed that large needles formed within the pour tube during the atomization experiment, which eventually blocked the melt stream. Alcoa verified the needle formation in this alloy using theoretical modeling of phase solidification. Sufficient powder of this composition was still generated to allow powder characterization and additive manufacturing trials at Alcoa.

  18. SCA1+ Cells from the Heart Possess a Molecular Circadian Clock and Display Circadian Oscillations in Cellular Functions

    Directory of Open Access Journals (Sweden)

    Bastiaan C. Du Pré

    2017-09-01

    Full Text Available Stem cell antigen 1-positive (SCA1+ cells (SPCs have been investigated in cell-based cardiac repair and pharmacological research, although improved cardiac function after injection has been variable and the mode of action remains unclear. Circadian (24-hr rhythms are biorhythms regulated by molecular clocks that play an important role in (pathophysiology. Here, we describe (1 the presence of a molecular circadian clock in SPCs and (2 circadian rhythmicity in SPC function. We isolated SPCs from human fetal heart and found that these cells possess a molecular clock based on typical oscillations in core clock components BMAL1 and CRY1. Functional analyses revealed that circadian rhythmicity also governs SPC proliferation, stress tolerance, and growth factor release, with large differences between peaks and troughs. We conclude that SPCs contain a circadian molecular clock that controls crucial cellular functions. Taking circadian rhythms into account may improve reproducibility and outcome of research and therapies using SPCs.

  19. The Mechanics of Mechanical Watches and Clocks

    CERN Document Server

    Du, Ruxu

    2013-01-01

    "The Mechanics of Mechanical Watches and Clocks" presents historical views and mathematical models of mechanical watches and clocks. Although now over six hundred years old, mechanical watches and clocks are still popular luxury items that fascinate many people around the world. However few have examined the theory of how they work as presented in this book. The illustrations and computer animations are unique and have never been published before. It will be of significant interest to researchers in mechanical engineering, watchmakers and clockmakers, as well as people who have an engineering background and are interested in mechanical watches and clocks. It will also inspire people in other fields of science and technology, such as mechanical engineering and electronics engineering, to advance their designs. Professor Ruxu Du works at the Chinese University of Hong Kong, China. Assistant Professor Longhan Xie works at the South China University of Technology, China.

  20. CDDIS_GNSS_products_clocks_final

    Data.gov (United States)

    National Aeronautics and Space Administration — Satellite and receiver clock products derived from analysis of Global Navigation Satellite System (GNSS) data. These products are the generated by analysis centers...

  1. CDDIS_GNSS_products_clocks_rapid

    Data.gov (United States)

    National Aeronautics and Space Administration — Satellite and receiver clock products derived from analysis of Global Navigation Satellite System (GNSS) data. These products are the generated by analysis centers...

  2. Mini Review: Circadian Clocks, Stress and Immunity

    Directory of Open Access Journals (Sweden)

    Rebecca eDumbell

    2016-05-01

    Full Text Available In mammals, molecular circadian clocks are present in most cells of the body, and this circadian network plays an important role in synchronizing physiological processes and behaviors to the appropriate time of day. The hypothalamic-pituitary-adrenal endocrine axis regulates the response to acute and chronic stress, acting through its final effectors – glucocorticoids – released from the adrenal cortex. Glucocorticoid secretion, characterized by its circadian rhythm, has an important role in synchronizing peripheral clocks and rhythms downstream of the master circadian pacemaker in the suprachiasmatic nucleus. Finally, glucocorticoids are powerfully anti-inflammatory, and recent work has implicated the circadian clock in various aspects and cells of the immune system, suggesting a tight interplay of stress and circadian systems in the regulation of immunity. This mini-review summarizes our current understanding of the role of the circadian clock network in both, the HPA axis and the immune system, and discusses their interactions.

  3. Cellular Reprogramming–Turning the Clock Back

    Indian Academy of Sciences (India)

    Cellular Reprogramming - Turning the Clock Back - Nobel Prize in Physiology or Medicine, 2012. Deepa Subramanyam ... Keywords. Embryonic stem cells; pluripotency; reprogramming; differentiation; Nobel Prize 2012. ... National Centre for Cell Science University of Pune Campus Ganeshkhind Pune 411 007, India.

  4. Draper Clock-Synchronization Protocol in SAL

    Data.gov (United States)

    National Aeronautics and Space Administration — In 1973, Daly, Hpokins, and McKenna (from Draper Lab.) presented a fault-tolerant digital clocking system at the FTCS conference. This is probably one of the first...

  5. Cell-permeable Circadian Clock Proteins

    National Research Council Canada - National Science Library

    Johnson, Carl

    2002-01-01

    .... These 'biological clocks' are important to human physiology. For example, psychiatric and medical studies have shown that circadian rhythmicity is involved in some forms of depressive illness, 'jet lag', drug tolerance/efficacy, memory, and insomnia...

  6. Entrainment of the Neurospora circadian clock

    NARCIS (Netherlands)

    Merrow, M; Boesl, C; Ricken, J; Messerschmitt, M; Goedel, M; Roenneberg, T

    2006-01-01

    Neurospora crassa has been systematically investigated for circadian entrainment behavior. Many aspects of synchronization can be investigated in this simple, cellular system, ranging from systematic entrainment and drivenness to masking. Clock gene expression during entrainment and entrainment

  7. Photoemission delay: The White Rabbit's clock

    Science.gov (United States)

    Calegari, Francesca

    2017-03-01

    Without a very precise timer one can never catch up with the electron released in photoemission. Attosecond streaking spectroscopy allows such a chronometer clock to be set to zero and reveals the role of electron correlations.

  8. Atomic force microscopy based investigations of anti-inflammatory effects in lipopolysaccharide-stimulated macrophages.

    Science.gov (United States)

    Pi, Jiang; Cai, Huaihong; Yang, Fen; Jin, Hua; Liu, Jianxin; Yang, Peihui; Cai, Jiye

    2016-01-01

    A new method based on atomic force microscopy (AFM) was developed to investigate the anti-inflammatory effects of drugs on lipopolysaccharide (LPS)-stimulated RAW264.7 macrophages. The LPS-stimulated RAW264.7 macrophage cell line is a widely used in vitro cell model for the screening of anti-inflammatory drugs or the study of anti-inflammatory mechanisms. In this work, the inhibitory effects of dexamethasone and quercetin on LPS-CD14 receptor binding in RAW264.7 macrophages was probed by LPS-functionalized tips for the first time. Both dexamethasone and quercetin were found to inhibit LPS-induced NO production, iNOS expression, IκBα phosphorylation, and IKKα/β phosphorylation in RAW264.7 macrophages. The morphology and ultrastructure of RAW264.7 macrophages were determined by AFM, which indicated that dexamethasone and quercetin could inhibit LPS-induced cell surface particle size and roughness increase in RAW264.7 macrophages. The binding of LPS and its receptor in RAW264.7 macrophages was determined by LPS-functionalized AFM tips, which demonstrated that the binding force and binding probability between LPS and CD14 receptor on the surface of RAW264.7 macrophages were also inhibited by dexamethasone or quercetin treatment. The obtained results imply that AFM, which is very useful for the investigation of potential targets for anti-inflammatory drugs on native macrophages and the enhancement of our understanding of the anti-inflammatory effects of drugs, is expected to be developed into a promising tool for the study of anti-inflammatory drugs.

  9. Atomic layer deposition on polymer based flexible packaging materials: Growth characteristics and diffusion barrier properties

    Energy Technology Data Exchange (ETDEWEB)

    Kaeaeriaeinen, Tommi O., E-mail: tommi.kaariainen@lut.f [ASTRaL, Lappeenranta University of Technology, Prikaatinkatu 3 E, 50100 Mikkeli (Finland); Maydannik, Philipp, E-mail: philipp.maydannik@lut.f [ASTRaL, Lappeenranta University of Technology, Prikaatinkatu 3 E, 50100 Mikkeli (Finland); Cameron, David C., E-mail: david.cameron@lut.f [ASTRaL, Lappeenranta University of Technology, Prikaatinkatu 3 E, 50100 Mikkeli (Finland); Lahtinen, Kimmo, E-mail: kimmo.lahtinen@tut.f [Tampere University of Technology, Paper Converting and Packaging Technology, P.O. Box 541, 33101 Tampere (Finland); Johansson, Petri, E-mail: petri.johansson@tut.f [Tampere University of Technology, Paper Converting and Packaging Technology, P.O. Box 541, 33101 Tampere (Finland); Kuusipalo, Jurkka, E-mail: jurkka.kuusipalo@tut.f [Tampere University of Technology, Paper Converting and Packaging Technology, P.O. Box 541, 33101 Tampere (Finland)

    2011-03-01

    One of the most promising areas for the industrial application of atomic layer deposition (ALD) is for gas barrier layers on polymers. In this work, a packaging material system with improved diffusion barrier properties has been developed and studied by applying ALD on flexible polymer based packaging materials. Nanometer scale metal oxide films have been applied to polymer-coated papers and their diffusion barrier properties have been studied by means of water vapor and oxygen transmission rates. The materials for the study were constructed in two stages: the paper was firstly extrusion coated with polymer film, which was then followed by the ALD deposition of oxide layer. The polymers used as extrusion coatings were polypropylene, low and high density polyethylene, polylactide and polyethylene terephthalate. Water vapor transmission rates (WVTRs) were measured according to method SCAN-P 22:68 and oxygen transmission rates (O{sub 2}TRs) according to a standard ASTM D 3985. According to the results a 10 nm oxide layer already decreased the oxygen transmission by a factor of 10 compared to uncoated material. WVTR with 40 nm ALD layer was better than the level currently required for most common dry flexible packaging applications. When the oxide layer thickness was increased to 100 nm and above, the measured WVTRs were limited by the measurement set up. Using an ALD layer allowed the polymer thickness on flexible packaging materials to be reduced. Once the ALD layer was 40 nm thick, WVTRs and O{sub 2}TRs were no longer dependent on polymer layer thickness. Thus, nanometer scale ALD oxide layers have shown their feasibility as high quality diffusion barriers on flexible packaging materials.

  10. A Systematic Methodology for Uncertainty Analysis of Group Contribution Based and Atom Connectivity Index Based Models for Estimation of Properties of Pure Components

    DEFF Research Database (Denmark)

    Hukkerikar, Amol; Sarup, Bent; Sin, Gürkan

    concentration. The application of the developed methodology is highlighted through a set of molecules not used in the parameter estimation step. The developed methodology can be used to assist uncertainty and sensitivity analysis of product/process design to obtain rationally the risk/ safety factors...... and atomic connectivity index method) has been employed to create the missing groups and predict their contributions through the regressed contributions of connectivity indices. The objective of this work is to develop a systematic methodology to carry out uncertainty analysis of group contribution based...... and atom connectivity index based property prediction models. This includes: (i) parameter estimation using available MG based property prediction models and large training sets to determine improved group and atom contributions; and (ii) uncertainty analysis to establish statistical information...

  11. Synchrony dynamics during initiation, failure, and rescue of the segmentation clock.

    Science.gov (United States)

    Riedel-Kruse, Ingmar H; Müller, Claudia; Oates, Andrew C

    2007-09-28

    The "segmentation clock" is thought to coordinate sequential segmentation of the body axis in vertebrate embryos. This clock comprises a multicellular genetic network of synchronized oscillators, coupled by intercellular Delta-Notch signaling. How this synchrony is established and how its loss determines the position of segmentation defects in Delta and Notch mutants are unknown. We analyzed the clock's synchrony dynamics by varying strength and timing of Notch coupling in zebra-fish embryos with techniques for quantitative perturbation of gene function. We developed a physical theory based on coupled phase oscillators explaining the observed onset and rescue of segmentation defects, the clock's robustness against developmental noise, and a critical point beyond which synchrony decays. We conclude that synchrony among these genetic oscillators can be established by simultaneous initiation and self-organization and that the segmentation defect position is determined by the difference between coupling strength and noise.

  12. Adhesion of resin-based sealers to dentine: an atomic force microscopy study.

    Science.gov (United States)

    do Prado, M; de Assis, D F; Gomes, B P F A; Simão, R A

    2014-11-01

    To evaluate the effect of several final irrigants on the adhesion force (Fad) between dentine and resin-based sealers by means of atomic force microscopy (AFM). Twelve distal roots of mandibular molars were used. The roots were smoothened and cut to obtain 36 specimens. During chemomechanical preparation of the root canals, 5.25% NaOCl was used as the irrigant. The specimens were then divided into six groups according to the final irrigant used: control group - immersed in distilled water (DW) for 1 min; chlorhexidine (CHX) group - in 2% CHX for 1 min; NaOCl group - in 5.25% NaOCl for 1 min; EDTA group - in 17% EDTA for 5 min, EDTA/CHX group - in EDTA, followed by intermediate flushing with DW and then immersed in CHX; EDTA/NaOCl group - in EDTA, followed by intermediate flushing with DW and then immersed in NaOCl. After the treatments, all groups were washed with DW to remove all traces of the irrigants. Afterwards, the samples were dried and attached to a glass base. AFM tips containing AH Plus and Real Seal SE sealers were used to obtain force-distance curves with regard to dentine-treated surfaces. Data were analysed statistically using nonparametric tests with the significance level set at P < 0.05. In the groups with smear layer, a final flush with CHX and NaOCl resulted in significantly higher Fad values than the control group for both sealers (P < 0.001). When smear layer was removed, the highest Fad values associated with AH Plus occurred with a final flush of NaOCl, whilst in Real Seal SE, the highest values were found with a final flush of CHX (all results significant at P < 0.001). Irrigants had a positive effect on the adhesion of the resin-based sealers, AH Plus and Real Seal SE, to dentine. © 2014 International Endodontic Journal. Published by John Wiley & Sons Ltd.

  13. Nanomechanical assessment of human and murine collagen fibrils via atomic force microscopy cantilever-based nanoindentation.

    Science.gov (United States)

    Andriotis, Orestis G; Manuyakorn, Wiparat; Zekonyte, Jurgita; Katsamenis, Orestis L; Fabri, Sebastien; Howarth, Peter H; Davies, Donna E; Thurner, Philipp J

    2014-11-01

    The nanomechanical assessment of collagen fibrils via atomic force microscopy (AFM) is of increasing interest within the biomedical research community. In contrast to conventional nanoindentation there exists no common standard for conducting experiments and analysis of data. Currently used analysis approaches vary between studies and validation of quantitative results is usually not performed, which makes comparison of data from different studies difficult. Also there are no recommendations with regards to the maximum indentation depth that should not be exceeded to avoid substrate effects. Here we present a methodology and analysis approach for AFM cantilever-based nanoindentation experiments that allows efficient use of captured data and relying on a reference sample for determination of tip shape. Further we show experimental evidence that maximum indentation depth on collagen fibrils should be lower than 10-15% of the height of the fibril to avoid substrate effects and we show comparisons between our and other approaches used in previous works. While our analysis approach yields similar values for indentation modulus compared to the Oliver-Pharr method we found that Hertzian analysis yielded significantly lower values. Applying our approach we successfully and efficiently indented collagen fibrils from human bronchi, which were about 30 nm in size, considerably smaller compared to collagen fibrils obtained from murine tail-tendon. In addition, derived mechanical parameters of collagen fibrils are in agreement with data previously published. To establish a quantitative validation we compared indentation results from conventional and AFM cantilever-based nanoindentation on polymeric samples with known mechanical properties. Importantly we can show that our approach yields similar results when compared to conventional nanoindentation on polymer samples. Introducing an approach that is reliable, efficient and taking into account the AFM tip shape, we anticipate

  14. Biological clocks and the practice of psychiatry

    OpenAIRE

    Schulz, Pierre

    2007-01-01

    Endogenous biological clocks enable living species to acquire some independence in relation to time. They improve the efficiency of biological systems, by allowing them to anticipate future constraints on major physyological systems and cell energy metabolism. The temporal organization of a giwen biological function can be impaired in its coordination with astronomical time or with other biological function. There are also external conditions that influence biological clocks. This temporal or...

  15. Clock gene variation in Tachycineta swallows

    Science.gov (United States)

    Dor, Roi; Cooper, Caren B; Lovette, Irby J; Massoni, Viviana; Bulit, Flor; Liljesthrom, Marcela; Winkler, David W

    2012-01-01

    Many animals use photoperiod cues to synchronize reproduction with environmental conditions and thereby improve their reproductive success. The circadian clock, which creates endogenous behavioral and physiological rhythms typically entrained to photoperiod, is well characterized at the molecular level. Recent work provided evidence for an association between Clock poly-Q length polymorphism and latitude and, within a population, an association with the date of laying and the length of the incubation period. Despite relatively high overall breeding synchrony, the timing of clutch initiation has a large impact on the fitness of swallows in the genus Tachycineta. We compared length polymorphism in the Clock poly-Q region among five populations from five different Tachycineta species that breed across a hemisphere-wide latitudinal gradient (Fig. 1). Clock poly-Q variation was not associated with latitude; however, there was an association between Clock poly-Q allele diversity and the degree of clutch size decline within breeding seasons. We did not find evidence for an association between Clock poly-Q variation and date of clutch initiation in for any of the five Tachycineta species, nor did we found a relationship between incubation duration and Clock genotype. Thus, there is no general association between latitude, breeding phenology, and Clock polymorphism in this clade of closely related birds. Figure 1 Photos of Tachycineta swallows that were used in this study: A) T. bicolor from Ithaca, New York, B) T. leucorrhoa from Chascomús, Argentina, C) T. albilinea from Hill Bank, Belize, D) T. meyeni from Puerto Varas, Chile, and E) T. thalassina from Mono Lake, California, Photographers: B: Valentina Ferretti; A, C-E: David Winkler. PMID:22408729

  16. Clock Genes Control Cortical Critical Period Timing

    OpenAIRE

    Kobayashi, Yohei; Ye, Zhanlei; Hensch, Takao K.

    2015-01-01

    Circadian rhythms control a variety of physiological processes, but whether they may also time brain development remains largely unknown. Here, we show that circadian clock genes control the onset of critical period plasticity in the neocortex. Within visual cortex of Clock-deficient mice, the emergence of circadian gene expression was dampened, and the maturation of inhibitory parvalbumin (PV)-cell networks slowed. Loss of visual acuity in response to brief monocular deprivation was concomit...

  17. Electrostatic trapping and in situ detection of Rydberg atoms above chip-based transmission lines

    CERN Document Server

    Lancuba, P

    2016-01-01

    Beams of helium atoms in Rydberg-Stark states with principal quantum number $n=48$ and electric dipole moments of 4600~D have been decelerated from a mean initial longitudinal speed of 2000~m/s to zero velocity in the laboratory-fixed frame-of-reference in the continuously moving electric traps of a transmission-line decelerator. In this process accelerations up to $-1.3\\times10^{7}$~m/s$^2$ were applied, and changes in kinetic energy of $\\Delta E_{\\mathrm{kin}}=1.3\\times10^{-20}$~J ($\\Delta E_{\\mathrm{kin}}/e = 83$~meV) per atom were achieved. Guided and decelerated atoms, and those confined in stationary electrostatic traps, were detected in situ by pulsed electric field ionisation. The results of numerical calculations of particle trajectories within the decelerator have been used to characterise the observed deceleration efficiencies, and aid in the interpretation of the experimental data.

  18. 4D Flexible Atom-Pairs: An efficient probabilistic conformational space comparison for ligand-based virtual screening

    Science.gov (United States)

    2011-01-01

    Background The performance of 3D-based virtual screening similarity functions is affected by the applied conformations of compounds. Therefore, the results of 3D approaches are often less robust than 2D approaches. The application of 3D methods on multiple conformer data sets normally reduces this weakness, but entails a significant computational overhead. Therefore, we developed a special conformational space encoding by means of Gaussian mixture models and a similarity function that operates on these models. The application of a model-based encoding allows an efficient comparison of the conformational space of compounds. Results Comparisons of our 4D flexible atom-pair approach with over 15 state-of-the-art 2D- and 3D-based virtual screening similarity functions on the 40 data sets of the Directory of Useful Decoys show a robust performance of our approach. Even 3D-based approaches that operate on multiple conformers yield inferior results. The 4D flexible atom-pair method achieves an averaged AUC value of 0.78 on the filtered Directory of Useful Decoys data sets. The best 2D- and 3D-based approaches of this study yield an AUC value of 0.74 and 0.72, respectively. As a result, the 4D flexible atom-pair approach achieves an average rank of 1.25 with respect to 15 other state-of-the-art similarity functions and four different evaluation metrics. Conclusions Our 4D method yields a robust performance on 40 pharmaceutically relevant targets. The conformational space encoding enables an efficient comparison of the conformational space. Therefore, the weakness of the 3D-based approaches on single conformations is circumvented. With over 100,000 similarity calculations on a single desktop CPU, the utilization of the 4D flexible atom-pair in real-world applications is feasible. PMID:21733172

  19. 4D Flexible Atom-Pairs: An efficient probabilistic conformational space comparison for ligand-based virtual screening

    Directory of Open Access Journals (Sweden)

    Jahn Andreas

    2011-07-01

    Full Text Available Abstract Background The performance of 3D-based virtual screening similarity functions is affected by the applied conformations of compounds. Therefore, the results of 3D approaches are often less robust than 2D approaches. The application of 3D methods on multiple conformer data sets normally reduces this weakness, but entails a significant computational overhead. Therefore, we developed a special conformational space encoding by means of Gaussian mixture models and a similarity function that operates on these models. The application of a model-based encoding allows an efficient comparison of the conformational space of compounds. Results Comparisons of our 4D flexible atom-pair approach with over 15 state-of-the-art 2D- and 3D-based virtual screening similarity functions on the 40 data sets of the Directory of Useful Decoys show a robust performance of our approach. Even 3D-based approaches that operate on multiple conformers yield inferior results. The 4D flexible atom-pair method achieves an averaged AUC value of 0.78 on the filtered Directory of Useful Decoys data sets. The best 2D- and 3D-based approaches of this study yield an AUC value of 0.74 and 0.72, respectively. As a result, the 4D flexible atom-pair approach achieves an average rank of 1.25 with respect to 15 other state-of-the-art similarity functions and four different evaluation metrics. Conclusions Our 4D method yields a robust performance on 40 pharmaceutically relevant targets. The conformational space encoding enables an efficient comparison of the conformational space. Therefore, the weakness of the 3D-based approaches on single conformations is circumvented. With over 100,000 similarity calculations on a single desktop CPU, the utilization of the 4D flexible atom-pair in real-world applications is feasible.

  20. Design of a Low Phase Noise VCO for Rubidium Atomic Frequency Standard

    Directory of Open Access Journals (Sweden)

    Ju Qingyun

    2016-01-01

    Full Text Available Compared to the size and the power consumption of the traditional atomic clocks, the ones based on coherent population trapping (CPT can provide improvement by two orders of magnitude in both aspects above, making them needed urgently in many fields. Among different CPT atomic clocks, the one made with the rubidium atom are used widely, and their operating performance largely depends on its internal voltage-controlled oscillator (VCO which is used to provide a proper microwave signal. Based on this, a small size and low phase noise 3.035GHz VCO is designed with a modified Clapp circuit topology using low-cost surface-mount components, including a coaxial resonant (COAX with high quality factor. The designed VCO is simulated and optimized with the combined use of the negative resistance analysis method and the transmission analysis with a virtual-ground. In order to obtain the desired results, different values of key capacitor elements are tried according to their concrete influences on the VCO during the process of the circuit tuning. The test results show that the phase noises of the VCO are -60.49dBc/Hz@300Hz, -73.08dBc/Hz@1KHz and -97.48dBc/Hz@10KHz, the output power is -1.13dBm and the voltage-controlled tuning sensitivity is about 12MHz/V.

  1. Do Caucasian and Asian clocks tick differently?

    Directory of Open Access Journals (Sweden)

    A.A. Barbosa

    Full Text Available The Period 3 and Clock genes are important components of the mammalian molecular circadian system. Studies have shown association between polymorphisms in these clock genes and circadian phenotypes in different populations. Nevertheless, differences in the pattern of allele frequency and genotyping distribution are systematically observed in studies with different ethnic groups. To investigate and compare the pattern of distribution in a sample of Asian and Caucasian populations living in Brazil, we evaluated two well-studied polymorphisms in the clock genes: a variable number of tandem repeats (VNTR in PER3 and a single nucleotide polymorphism (SNP in CLOCK. The aim of this investigation was to search for clues about human evolutionary processes related to circadian rhythms. We selected 109 Asian and 135 Caucasian descendants. The frequencies of the shorter allele (4 repeats in the PER3 gene and the T allele in the CLOCK gene among Asians (0.86 and 0.84, respectively were significantly higher than among Caucasians (0.69 and 0.71, respectively. Our results directly confirmed the different distribution of these polymorphisms between the Asian and Caucasian ethnic groups. Given the genetic differences found between groups, two points became evident: first, ethnic variations may have implications for the interpretation of results in circadian rhythm association studies, and second, the question may be raised about which evolutionary conditions shaped these genetic clock variations.

  2. Do Caucasian and Asian clocks tick differently?

    Science.gov (United States)

    Barbosa, A A; Pedrazzoli, M; Koike, B D V; Tufik, S

    2010-01-01

    The Period 3 and Clock genes are important components of the mammalian molecular circadian system. Studies have shown association between polymorphisms in these clock genes and circadian phenotypes in different populations. Nevertheless, differences in the pattern of allele frequency and genotyping distribution are systematically observed in studies with different ethnic groups. To investigate and compare the pattern of distribution in a sample of Asian and Caucasian populations living in Brazil, we evaluated two well-studied polymorphisms in the clock genes: a variable number of tandem repeats (VNTR) in PER3 and a single nucleotide polymorphism (SNP) in CLOCK. The aim of this investigation was to search for clues about human evolutionary processes related to circadian rhythms. We selected 109 Asian and 135 Caucasian descendants. The frequencies of the shorter allele (4 repeats) in the PER3 gene and the T allele in the CLOCK gene among Asians (0.86 and 0.84, respectively) were significantly higher than among Caucasians (0.69 and 0.71, respectively). Our results directly confirmed the different distribution of these polymorphisms between the Asian and Caucasian ethnic groups. Given the genetic differences found between groups, two points became evident: first, ethnic variations may have implications for the interpretation of results in circadian rhythm association studies, and second, the question may be raised about which evolutionary conditions shaped these genetic clock variations.

  3. Cost and Precision of Brownian Clocks

    Directory of Open Access Journals (Sweden)

    Andre C. Barato

    2016-12-01

    Full Text Available Brownian clocks are biomolecular networks that can count time. A paradigmatic example are proteins that go through a cycle, thus regulating some oscillatory behavior in a living system. Typically, such a cycle requires free energy often provided by ATP hydrolysis. We investigate the relation between the precision of such a clock and its thermodynamic costs. For clocks driven by a constant thermodynamic force, a given precision requires a minimal cost that diverges as the uncertainty of the clock vanishes. In marked contrast, we show that a clock driven by a periodic variation of an external protocol can achieve arbitrary precision at arbitrarily low cost. This result constitutes a fundamental difference between processes driven by a fixed thermodynamic force and those driven periodically. As a main technical tool, we map a periodically driven system with a deterministic protocol to one subject to an external protocol that changes in stochastic time intervals, which simplifies calculations significantly. In the nonequilibrium steady state of the resulting bipartite Markov process, the uncertainty of the clock can be deduced from the calculable dispersion of a corresponding current.

  4. Cost and Precision of Brownian Clocks

    Science.gov (United States)

    Barato, Andre C.; Seifert, Udo

    2016-10-01

    Brownian clocks are biomolecular networks that can count time. A paradigmatic example are proteins that go through a cycle, thus regulating some oscillatory behavior in a living system. Typically, such a cycle requires free energy often provided by ATP hydrolysis. We investigate the relation between the precision of such a clock and its thermodynamic costs. For clocks driven by a constant thermodynamic force, a given precision requires a minimal cost that diverges as the uncertainty of the clock vanishes. In marked contrast, we show that a clock driven by a periodic variation of an external protocol can achieve arbitrary precision at arbitrarily low cost. This result constitutes a fundamental difference between processes driven by a fixed thermodynamic force and those driven periodically. As a main technical tool, we map a periodically driven system with a deterministic protocol to one subject to an external protocol that changes in stochastic time intervals, which simplifies calculations significantly. In the nonequilibrium steady state of the resulting bipartite Markov process, the uncertainty of the clock can be deduced from the calculable dispersion of a corresponding current.

  5. Network features of the mammalian circadian clock.

    Directory of Open Access Journals (Sweden)

    Julie E Baggs

    2009-03-01

    Full Text Available The mammalian circadian clock is a cell-autonomous system that drives oscillations in behavior and physiology in anticipation of daily environmental change. To assess the robustness of a human molecular clock, we systematically depleted known clock components and observed that circadian oscillations are maintained over a wide range of disruptions. We developed a novel strategy termed Gene Dosage Network Analysis (GDNA in which small interfering RNA (siRNA-induced dose-dependent changes in gene expression were used to build gene association networks consistent with known biochemical constraints. The use of multiple doses powered the analysis to uncover several novel network features of the circadian clock, including proportional responses and signal propagation through interacting genetic modules. We also observed several examples where a gene is up-regulated following knockdown of its paralog, suggesting the clock network utilizes active compensatory mechanisms rather than simple redundancy to confer robustness and maintain function. We propose that these network features act in concert as a genetic buffering system to maintain clock function in the face of genetic and environmental perturbation.

  6. Do Caucasian and Asian clocks tick differently?

    Directory of Open Access Journals (Sweden)

    A.A. Barbosa

    2010-01-01

    Full Text Available The Period 3 and Clock genes are important components of the mammalian molecular circadian system. Studies have shown association between polymorphisms in these clock genes and circadian phenotypes in different populations. Nevertheless, differences in the pattern of allele frequency and genotyping distribution are systematically observed in studies with different ethnic groups. To investigate and compare the pattern of distribution in a sample of Asian and Caucasian populations living in Brazil, we evaluated two well-studied polymorphisms in the clock genes: a variable number of tandem repeats (VNTR in PER3 and a single nucleotide polymorphism (SNP in CLOCK. The aim of this investigation was to search for clues about human evolutionary processes related to circadian rhythms. We selected 109 Asian and 135 Caucasian descendants. The frequencies of the shorter allele (4 repeats in the PER3 gene and the T allele in the CLOCK gene among Asians (0.86 and 0.84, respectively were significantly higher than among Caucasians (0.69 and 0.71, respectively. Our results directly confirmed the different distribution of these polymorphisms between the Asian and Caucasian ethnic groups. Given the genetic differences found between groups, two points became evident: first, ethnic variations may have implications for the interpretation of results in circadian rhythm association studies, and second, the question may be raised about which evolutionary conditions shaped these genetic clock variations.

  7. Clock genes control cortical critical period timing.

    Science.gov (United States)

    Kobayashi, Yohei; Ye, Zhanlei; Hensch, Takao K

    2015-04-08

    Circadian rhythms control a variety of physiological processes, but whether they may also time brain development remains largely unknown. Here, we show that circadian clock genes control the onset of critical period plasticity in the neocortex. Within visual cortex of Clock-deficient mice, the emergence of circadian gene expression was dampened, and the maturation of inhibitory parvalbumin (PV) cell networks slowed. Loss of visual acuity in response to brief monocular deprivation was concomitantly delayed and rescued by direct enhancement of GABAergic transmission. Conditional deletion of Clock or Bmal1 only within PV cells recapitulated the results of total Clock-deficient mice. Unique downstream gene sets controlling synaptic events and cellular homeostasis for proper maturation and maintenance were found to be mis-regulated by Clock deletion specifically within PV cells. These data demonstrate a developmental role for circadian clock genes outside the suprachiasmatic nucleus, which may contribute mis-timed brain plasticity in associated mental disorders. Copyright © 2015 Elsevier Inc. All rights reserved.

  8. Maximum Likelihood Estimation of Clock Skew in IEEE 1588 with Fractional Gaussian Noise

    Directory of Open Access Journals (Sweden)

    Chagai Levy

    2015-01-01

    Full Text Available To support system-wide synchronization accuracy and precision in the sub-microsecond range without using GPS technique, the precise time protocol (PTP standard IEEE-1588 v2 is chosen. Recently, a new clock skew estimation technique was proposed for the slave based on a dual slave clock method that assumes that the packet delay variation (PDV in the Ethernet network is a constant delay. However, papers dealing with the Ethernet network have shown that this PDV is a long range dependency (LRD process which may be modeled as a fractional Gaussian noise (fGn with Hurst exponent (H in the range of 0.5clock skew estimator based on the maximum likelihood (ML technique and derive an approximated expression for the Cramer-Rao lower bound (CRLB both valid for the case where the PDV is modeled as fGn (0.5clock skew method outperforms the dual slave clock approach and that the simulated mean square error (MSE obtained by our new proposed clock skew estimator approaches asymptotically the developed CRLB.

  9. Manipulating Atoms with Light Achievements and Perspectives

    CERN Multimedia

    CERN. Geneva

    2006-01-01

    During the last few decades spectacular progress has been achieved in the control of atomic systems by light. It will be shown how it is possible to use the basic conservation laws in atom-photon interactions for polarizing atoms, for trapping them, for cooling them to extremely low temperatures, in the microkelvin, and even in the nanokelvin range. A review will be given of recent advances in this field and of new applications, including atomic clocks with very high relative stability and accuracy, atomic interferometers allowing precise measurement of rotation speeds and gravitational fields, the realization of new states of matter such as Bose-Einstein condensates, matter waves and atom lasers, ultracold molecules. New perspectives opened by these results will be also briefly discussed.

  10. Micromachined fountain pen as a tool for atomic force microscope-based nanoelectrochemical metal deposition

    NARCIS (Netherlands)

    Deladi, S.; Tas, Niels Roelof; Berenschot, Johan W.; de Boer, Meint J.; Krijnen, Gijsbertus J.M.; Elwenspoek, Michael Curt; de Boer, J.H.

    2005-01-01

    We present a device that enables nanoelectrochemical deposition using atomic force microscope. The micromachined fountain pen is a probe that consists of a fluidic reservoir, fluidic channels encapsulated in cantilevers and a pyramidal probe tip by which the fluid transfer to the sample surface

  11. T-Path Formula and Atomic Bases for Cluster Algebras of Type D

    Science.gov (United States)

    Gunawan, Emily; Musiker, Gregg

    2015-07-01

    We extend a T-path expansion formula for arcs on an unpunctured surface to the case of arcs on a once-punctured polygon and use this formula to give a combinatorial proof that cluster monomials form the atomic basis of a cluster algebra of type D.

  12. Determination of Trace Elements in Nickel Base Alloys by Atomic Absorption Spectrophotometry.

    Science.gov (United States)

    An investigation is described to ascertain whether or not atomic absorption spectrophotometry could be used to determine the concentration of trace ... elements such as silver (Ag), bismuth (Bi), cadmium (Cd), lead (Pb), phosphorus (P), and arsenic (As) in nickel alloys such as Udimet 500 without interference of other constituent elements. (Author)

  13. Low-temperature atomic layer deposition delivers more active and stable Pt-based catalysts

    NARCIS (Netherlands)

    Bui, H.V.; Grillo, F.; Kulkarni, S.S.; Bevaart, Ronald; Nguyên, V.T.; van der Linden, B.; Moulijn, J.A.; Makkee, M.; Kreutzer, M.T.; van Ommen, J.R.

    2017-01-01

    We tailored the size distribution of Pt nanoparticles (NPs) on graphene nanoplatelets at a given metal loading by using low-temperature atomic layer deposition carried out in a fluidized bed reactor operated at atmospheric pressure. The Pt NPs deposited at low temperature (100 °C) after 10 cycles

  14. Effective atomic numbers of some H-, C-, N-and O-based composite ...

    Indian Academy of Sciences (India)

    The differential incoherent scattering cross-sections of the composite materials of interest measured at these three angles in the same set-up and substituted in this expression would yield their effective atomic number at the three energies. Results obtained in this manner for bakelite, nylon, epoxy, teflon, perspex and some ...

  15. Initiating Heavy-atom Based Phasing by Multi-Dimensional Molecular Replacement

    DEFF Research Database (Denmark)

    Pedersen, Bjørn Panyella; Gourdon, Pontus; Liu, Xiangyu

    2014-01-01

    in the determination of a membrane protein structure, the CopA Cu+-ATPase, when other methods had failed to resolve the heavy atom substructure. MRPM is particularly suited for proteins undergoing large conformational changes where multiple search models should be generated, and it enables the identification of weak...

  16. Chain-Branching Control of the Atomic Structure of Alkanethiol-Based Gold–Sulfur Interfaces

    DEFF Research Database (Denmark)

    Wang, Yun; Chi, Qijin; Zhang, Jingdong

    2011-01-01

    Density functional theory structure calculations at 0 K and simulations at 300 K of observed high-resolution in situ scanning tunneling microscopy (STM) images reveal three different atomic-interface structures for the self-assembled monolayers (SAMs) of three isomeric butanethiols on Au(111...

  17. Initiating Heavy-atom Based Phasing by Multi-Dimensional Molecular Replacement

    DEFF Research Database (Denmark)

    Pedersen, Bjørn Panyella; Gourdon, Pontus Emanuel; Liu, Xiangyu

    2014-01-01

    in the determination of a membrane protein structure, the CopA Cu+-ATPase, when other methods had failed to resolve the heavy atom substructure. MRPM is particularly suited for proteins undergoing large conformational changes where multiple search models should be generated, and it enables the identification of weak...... but correct molecular replacement solutions with maximum contrast to prime experimental phasing efforts....

  18. Rydberg-atom based radio-frequency electrometry using frequency modulation spectroscopy in room temperature vapor cells.

    Science.gov (United States)

    Kumar, Santosh; Fan, Haoquan; Kübler, Harald; Jahangiri, Akbar J; Shaffer, James P

    2017-04-17

    Rydberg atom-based electrometry enables traceable electric field measurements with high sensitivity over a large frequency range, from gigahertz to terahertz. Such measurements are particularly useful for the calibration of radio frequency and terahertz devices, as well as other applications like near field imaging of electric fields. We utilize frequency modulated spectroscopy with active control of residual amplitude modulation to improve the signal to noise ratio of the optical readout of Rydberg atom-based radio frequency electrometry. Matched filtering of the signal is also implemented. Although we have reached similarly, high sensitivity with other read-out methods, frequency modulated spectroscopy is advantageous because it is well-suited for building a compact, portable sensor. In the current experiment, ∼3 µV cm-1 Hz-1/2 sensitivity is achieved and is found to be photon shot noise limited.

  19. Understanding the Atomic Scale Mechanisms that Control the Attainment of Ultralow Friction and Wear in Carbon-Based Materials

    Science.gov (United States)

    2016-01-16

    2015. 15. Invited. New Insights into Friction and Wear through In-Situ Nanotribology. Joint Symposium of the Surface Science Society of Japan and...and Carpick, R.W. Influence of Surface Passivation on the Friction and Wear Behavior of Ultrananocrystalline Diamond and Tetrahedral Amorphous Carbon...AFRL-AFOSR-JP-TR-2016-0053 Understanding the Atomic Scale Mechanism that controls the attainment of ultralow friction and wear in carbon based

  20. A new model based on group theory for correlating vibrational displacement vectors of attached atoms and shapes of the central atom otbitals in ABn(n=2-5 molecules

    Directory of Open Access Journals (Sweden)

    R. Tayebee

    2003-12-01

    Full Text Available   Stretching and bending normal vibrations of AB2(C2v, AB3(D3h, AB4(D4h, and AB5(D3h molecules are described by correlating the vibrational displacement vectors of the attached atoms with the standard representations of s, p and d atomic orbitals of the central atom in ABn(n=2-5 molecules. It is found that stretching and bending normal vibrations of simple molecules accord with probability density of hybrid orbitals of the central atom. So, stretching and bending normal vibrations can be determined based on the irreducible representations of each vibration, and symbols for the representations which are suggested by Muliken.

  1. The clock in the cell : Entrainment of the circadian clock in Neurospora crassa

    NARCIS (Netherlands)

    Madeti Jyothi-Boesl, Cornelia

    2008-01-01

    Since reports of daily leaf movements 2000 years ago, a so-called circadian clock (‘circa diem’ meaning ‘about a day’) has been described in organisms from almost all phyla. The work presented in this thesis gives special emphasis on the circadian clock in the fungus Neurospora crassa, a rather

  2. StatSTEM: An efficient approach for accurate and precise model-based quantification of atomic resolution electron microscopy images

    Energy Technology Data Exchange (ETDEWEB)

    De Backer, A.; Bos, K.H.W. van den [Electron Microscopy for Materials Science (EMAT), University of Antwerp, Groenenborgerlaan 171, 2020 Antwerp (Belgium); Van den Broek, W. [AG Strukturforschung/Elektronenmikroskopie, Institut für Physik, Humboldt-Universität zu Berlin, Newtonstraße 15, 12489 Berlin (Germany); Sijbers, J. [iMinds-Vision Lab, University of Antwerp, Universiteitsplein 1, 2610 Wilrijk (Belgium); Van Aert, S., E-mail: sandra.vanaert@uantwerpen.be [Electron Microscopy for Materials Science (EMAT), University of Antwerp, Groenenborgerlaan 171, 2020 Antwerp (Belgium)

    2016-12-15

    An efficient model-based estimation algorithm is introduced to quantify the atomic column positions and intensities from atomic resolution (scanning) transmission electron microscopy ((S)TEM) images. This algorithm uses the least squares estimator on image segments containing individual columns fully accounting for overlap between neighbouring columns, enabling the analysis of a large field of view. For this algorithm, the accuracy and precision with which measurements for the atomic column positions and scattering cross-sections from annular dark field (ADF) STEM images can be estimated, has been investigated. The highest attainable precision is reached even for low dose images. Furthermore, the advantages of the model-based approach taking into account overlap between neighbouring columns are highlighted. This is done for the estimation of the distance between two neighbouring columns as a function of their distance and for the estimation of the scattering cross-section which is compared to the integrated intensity from a Voronoi cell. To provide end-users this well-established quantification method, a user friendly program, StatSTEM, is developed which is freely available under a GNU public license. - Highlights: • An efficient model-based method for quantitative electron microscopy is introduced. • Images are modelled as a superposition of 2D Gaussian peaks. • Overlap between neighbouring columns is taken into account. • Structure parameters can be obtained with the highest precision and accuracy. • StatSTEM, auser friendly program (GNU public license) is developed.

  3. Correction of clock errors in seismic data using noise cross-correlations

    Science.gov (United States)

    Hable, Sarah; Sigloch, Karin; Barruol, Guilhem; Hadziioannou, Céline

    2017-04-01

    drifts (1 ms/day) as well as large clock jumps (6 min) are identified. The same method is applied to records of five OBS stations deployed within a radius of 150 km around La Réunion. The assumption of a linear clock drift is verified by correlating OBS for which GPS-based skew corrections were available with land stations. For two OBS stations without skew estimates, we find clock drifts of 0.9 ms/day and 0.4 ms/day. This study salvages expensive seismic records from remote regions that would be otherwise lost for seismicity or tomography studies.

  4. Dynamic properties of the segmentation clock mediated by microRNA.

    Science.gov (United States)

    Jing, Bo; Yuan, Julin; Yin, Zhongqiong; Lv, Cheng; Lu, Shengming; Xiong, Haoshan; Tang, Huaqiao; Ye, Gang; Shi, Fei

    2015-01-01

    Somites are embryonic precursors that give rise to the axial skeleton and skeletal muscles and form the segmental vertebrate body plan. Somitogenesis is controlled by the "segmentation clock", which contains multiple oscillator genes that must be tightly regulated at both the transcriptional and post-transcriptional levels for proper clock function. However, how the segmentation clock governs the formation of the somites at post-transcriptional level, remains unclear. In this work, we develop an integrated model with three modules for the segmentation clock and explore the mechanism for somite segmentation based on the dynamics of the network. By numerical simulations, we find that the amplitude and period of the somite segmentation clock are sensitive to Notch activity, which is fine-tuned by Lunatic fringe (Lfng) and microRNA (miRNA), and Lfng and miRNA are essential for forming the proper segmentation during somitogenesis. Moreover, miRNA is found to have a crucial role in minimizing the fluctuation period and amplitude to maintain coherent oscillation. Introduction of stochasticity in the model enables us to explain the available experimental data with dampening of oscillations. These findings uncover a fresh mechanism for regulation of the segmentation clock at a post-transcriptional level and provide important insights into how the relatively subtle effects of miRNAs on target genes can have broad effects in developmental situations that have critical requirements for tight posttranscriptional regulation.

  5. Peripheral Skin Temperature and Circadian Biological Clock in Shift Nurses after a Day off

    Science.gov (United States)

    Bracci, Massimo; Ciarapica, Veronica; Copertaro, Alfredo; Barbaresi, Mariella; Manzella, Nicola; Tomasetti, Marco; Gaetani, Simona; Monaco, Federica; Amati, Monica; Valentino, Matteo; Rapisarda, Venerando; Santarelli, Lory

    2016-01-01

    The circadian biological clock is essentially based on the light/dark cycle. Some people working with shift schedules cannot adjust their sleep/wake cycle to the light/dark cycle, and this may result in alterations of the circadian biological clock. This study explored the circadian biological clock of shift and daytime nurses using non-invasive methods. Peripheral skin temperature, cortisol and melatonin levels in saliva, and Per2 expression in pubic hair follicle cells were investigated for 24 h after a day off. Significant differences were observed in peripheral skin temperature and cortisol levels between shift and daytime nurses. No differences in melatonin levels were obtained. Per2 maximum values were significantly different between the two groups. Shift nurses exhibited lower circadian variations compared to daytime nurses, and this may indicate an adjustment of the circadian biological clock to continuous shift schedules. Non-invasive procedures, such as peripheral skin temperature measurement, determination of cortisol and melatonin in saliva, and analysis of clock genes in hair follicle cells, may be effective approaches to extensively study the circadian clock in shift workers. PMID:27128899

  6. Peripheral Skin Temperature and Circadian Biological Clock in Shift Nurses after a Day off

    Directory of Open Access Journals (Sweden)

    Massimo Bracci

    2016-04-01

    Full Text Available The circadian biological clock is essentially based on the light/dark cycle. Some people working with shift schedules cannot adjust their sleep/wake cycle to the light/dark cycle, and this may result in alterations of the circadian biological clock. This study explored the circadian biological clock of shift and daytime nurses using non-invasive methods. Peripheral skin temperature, cortisol and melatonin levels in saliva, and Per2 expression in pubic hair follicle cells were investigated for 24 h after a day off. Significant differences were observed in peripheral skin temperature and cortisol levels between shift and daytime nurses. No differences in melatonin levels were obtained. Per2 maximum values were significantly different between the two groups. Shift nurses exhibited lower circadian variations compared to daytime nurses, and this may indicate an adjustment of the circadian biological clock to continuous shift schedules. Non-invasive procedures, such as peripheral skin temperature measurement, determination of cortisol and melatonin in saliva, and analysis of clock genes in hair follicle cells, may be effective approaches to extensively study the circadian clock in shift workers.

  7. Peripheral Skin Temperature and Circadian Biological Clock in Shift Nurses after a Day off.

    Science.gov (United States)

    Bracci, Massimo; Ciarapica, Veronica; Copertaro, Alfredo; Barbaresi, Mariella; Manzella, Nicola; Tomasetti, Marco; Gaetani, Simona; Monaco, Federica; Amati, Monica; Valentino, Matteo; Rapisarda, Venerando; Santarelli, Lory

    2016-04-26

    The circadian biological clock is essentially based on the light/dark cycle. Some people working with shift schedules cannot adjust their sleep/wake cycle to the light/dark cycle, and this may result in alterations of the circadian biological clock. This study explored the circadian biological clock of shift and daytime nurses using non-invasive methods. Peripheral skin temperature, cortisol and melatonin levels in saliva, and Per2 expression in pubic hair follicle cells were investigated for 24 h after a day off. Significant differences were observed in peripheral skin temperature and cortisol levels between shift and daytime nurses. No differences in melatonin levels were obtained. Per2 maximum values were significantly different between the two groups. Shift nurses exhibited lower circadian variations compared to daytime nurses, and this may indicate an adjustment of the circadian biological clock to continuous shift schedules. Non-invasive procedures, such as peripheral skin temperature measurement, determination of cortisol and melatonin in saliva, and analysis of clock genes in hair follicle cells, may be effective approaches to extensively study the circadian clock in shift workers.

  8. A Byzantine-Fault Tolerant Self-Stabilizing Protocol for Distributed Clock Synchronization Systems

    Science.gov (United States)

    Malekpour, Mahyar R.

    2006-01-01

    Embedded distributed systems have become an integral part of safety-critical computing applications, necessitating system designs that incorporate fault tolerant clock synchronization in order to achieve ultra-reliable assurance levels. Many efficient clock synchronization protocols do not, however, address Byzantine failures, and most protocols that do tolerate Byzantine failures do not self-stabilize. Of the Byzantine self-stabilizing clock synchronization algorithms that exist in the literature, they are based on either unjustifiably strong assumptions about initial synchrony of the nodes or on the existence of a common pulse at the nodes. The Byzantine self-stabilizing clock synchronization protocol presented here does not rely on any assumptions about the initial state of the clocks. Furthermore, there is neither a central clock nor an externally generated pulse system. The proposed protocol converges deterministically, is scalable, and self-stabilizes in a short amount of time. The convergence time is linear with respect to the self-stabilization period. Proofs of the correctness of the protocol as well as the results of formal verification efforts are reported.

  9. Trojan Horse Strategy for Non-invasive Interference of Clock Gene in the Oyster Crassostrea gigas.

    Science.gov (United States)

    Payton, Laura; Perrigault, Mickael; Bourdineaud, Jean-Paul; Marcel, Anjara; Massabuau, Jean-Charles; Tran, Damien

    2017-08-01

    RNA interference is a powerful method to inhibit specific gene expression. Recently, silencing target genes by feeding has been successfully carried out in nematodes, insects, and small aquatic organisms. A non-invasive feeding-based RNA interference is reported here for the first time in a mollusk bivalve, the pacific oyster Crassostrea gigas. In this Trojan horse strategy, the unicellular alga Heterocapsa triquetra is the food supply used as a vector to feed oysters with Escherichia coli strain HT115 engineered to express the double-stranded RNA targeting gene. To test the efficacy of the method, the Clock gene, a central gene of the circadian clock, was targeted for knockout. Results demonstrated specific and systemic efficiency of the Trojan horse strategy in reducing Clock mRNA abundance. Consequences of Clock disruption were observed in Clock-related genes (Bmal, Tim1, Per, Cry1, Cry2, Rev.-erb, and Ror) and triploid oysters were more sensitive than diploid to the interference. This non-invasive approach shows an involvement of the circadian clock in oyster bioaccumulation of toxins produced by the harmful alga Alexandrium minutum.

  10. The Circadian Clock Mutation Promotes Intestinal Dysbiosis.

    Science.gov (United States)

    Voigt, Robin M; Summa, Keith C; Forsyth, Christopher B; Green, Stefan J; Engen, Phillip; Naqib, Ankur; Vitaterna, Martha H; Turek, Fred W; Keshavarzian, Ali

    2016-02-01

    Circadian rhythm disruption is a prevalent feature of modern day society that is associated with an increase in pro-inflammatory diseases, and there is a clear need for a better understanding of the mechanism(s) underlying this phenomenon. We have previously demonstrated that both environmental and genetic circadian rhythm disruption causes intestinal hyperpermeability and exacerbates alcohol-induced intestinal hyperpermeability and liver pathology. The intestinal microbiota can influence intestinal barrier integrity and impact immune system function; thus, in this study, we sought to determine whether genetic alteration of the core circadian clock gene, Clock, altered the intestinal microbiota community. Male Clock(Δ19) -mutant mice (mice homozygous for a dominant-negative-mutant allele) or littermate wild-type mice were fed 1 of 3 experimental diets: (i) a standard chow diet, (ii) an alcohol-containing diet, or (iii) an alcohol-control diet in which the alcohol calories were replaced with dextrose. Stool microbiota was assessed with 16S ribosomal RNA gene amplicon sequencing. The fecal microbial community of Clock-mutant mice had lower taxonomic diversity, relative to wild-type mice, and the Clock(Δ19) mutation was associated with intestinal dysbiosis when mice were fed either the alcohol-containing or the control diet. We found that alcohol consumption significantly altered the intestinal microbiota in both wild-type and Clock-mutant mice. Our data support a model by which circadian rhythm disruption by the Clock(Δ19) mutation perturbs normal intestinal microbial communities, and this trend was exacerbated in the context of a secondary dietary intestinal stressor. Copyright © 2016 by the Research Society on Alcoholism.

  11. CODE's multi-GNSS orbit and clock solution

    Science.gov (United States)

    Prange, Lars; Orliac, Etienne; Dach, Rolf; Arnold, Daniel; Beutler, Gerhard; Schaer, Stefan; Jäggi, Adrian

    2015-04-01

    The Center for Orbit Determination in Europe (CODE) is contributing as a global analysis center to the International GNSS Service (IGS). Since 2012 CODE participates in the "Multi-GNSS EXperiment" (MGEX), launched by the IGS as a testbed for the incorporation of new GNSS and their signals into the existing IGS processing chains and software packages. We present CODE's latest MGEX solution - a fully integrated 5-system (GPS, GLONASS, Galileo, BeiDou, QZSS) GNSS orbit and clock solution, based on data starting from January 2014. The impact of radiation pressure modeling and orbital arc length on the solution quality will be discussed. The results will be validated with satellite laser ranging (SLR), assessment of satellite clock performance, and precise point positioning (PPP). The CODE MGEX orbit and clock products are publicly available in the IGS MGEX products directory at the CDDIS data center: ftp://cddis.gsfc.nasa.gov/gnss/products/mgex (the solution ID "com" stands for CODE-MGEX). The CODE MGEX products have been generated occasionally so far. Beginning in early 2015 they are provided in a more operational way with a delay of about two weeks.

  12. Fullerene-Based Macro-Heterocycle Prepared through Selective Incorporation of Three N and Two O Atoms into C60.

    Science.gov (United States)

    Li, Yanbang; Zhang, Gaihong; Wang, Dian; Xu, Beidi; Xu, Dan; Lou, Ning; Gan, Liangbing

    2016-11-14

    A 14-membered heterocycle is created on the C 60 cage skeleton through a multistep procedure. Key steps involve repeated PCl 5 -induced hydroxylamino N-O bond cleavage leading to insertion of nitrogen atoms, and also piperidine-induced peroxo O-O bond cleavage leading to insertion of oxygen atoms. The hetero atoms form one pyrrole, two pyran, and one diazepine rings in conjunction with the C 60 skeleton carbon atoms. The fullerene-based macrocycle showed unique reactivities towards fluoride ion and copper salts. © 2016 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

  13. Atomic-resolution measurements with a new tunable diode laser-based interferometer

    DEFF Research Database (Denmark)

    Silver, R.M.; Zou, H.; Gonda, S.

    2004-01-01

    We develop a new implementation of a Michelson interferometer designed to make measurements with an uncertainty of less than 20 pm. This new method uses a tunable diode laser as the light source, with the diode laser wavelength continuously tuned to fix the number of fringes in the measured optical...... path. The diode laser frequency is measured by beating against a reference laser. High-speed, accurate frequency measurements of the beat frequency signal enables the diode laser wavelength to be measured with nominally 20-pm accuracy for the measurements described. The new interferometer design...... is lightweight and is mounted directly on an ultra-high vacuum scanning tunneling microscope capable of atomic resolution. We report the simultaneous acquisition of an atomic resolution image, while the relative lateral displacement of the tip along the sample distance is measured with the new tunable diode...

  14. Biological clocks and rhythms in intertidal crustaceans.

    Science.gov (United States)

    de la Iglesia, Horacio O; Hsu, Yun-Wei A

    2010-06-01

    Animals with habitats within the intertidal zone are exposed to environmental cycles that include the ebb and flow of tidal waters, changes in tidal levels associated with the lunar month, the light-dark cycle and the alternation of seasons. This intricate temporal environment results in the selection of biological timing systems with endogenous clocks that can oscillate with this wide range of periodicities. Whereas great progress has been made in our understanding of the molecular and neural bases of circadian rhythms, that is, endogenous rhythms synchronized to the solar day, there is little understanding on how circatidal rhythms, namely endogenous rhythms synchronized to tides, are generated. Intertidal crustaceans have been a pivotal group for the demonstration of the endogenous nature of circatidal rhythms and their mechanisms of entrainment. We review here some of the classic work using intertidal crustaceans to unmask basic properties of circatidal systems, as well as work from our laboratory that aims to identify putative chemical signals that could be involved in the circatidal systems of decapod crustaceans.

  15. Localised quantum states of atomic and molecular particles physisorbed on carbon-based nanoparticles

    Czech Academy of Sciences Publication Activity Database

    Kaprálová-Žďánská, Petra Ruth; Trachta, Michal; Bludský, Ota; Špirko, Vladimír

    2014-01-01

    Roč. 141, č. 11 (2014), "114702-1"-"114702-10" ISSN 0021-9606 R&D Projects: GA ČR GAP205/11/0571; GA ČR GAP208/11/0436; GA ČR GAP208/10/0725 Institutional support: RVO:68378271 ; RVO:61388963 Keywords : periodic structure * carbon nanostructures * graphene * quantum mechanics * physisorbed Subject RIV: BG - Nuclear, Atomic and Molecular Physics, Colliders Impact factor: 2.952, year: 2014

  16. Relativistic multireference coupled-cluster theory based on a B -spline basis: Application to atomic francium

    Science.gov (United States)

    Tang, Yong-Bo; Lou, Bing-Qiong; Shi, Ting-Yun

    2017-08-01

    In this paper, we report the relativistic Fock space multireference coupled-cluster method for atomic structure calculations. We use the no-pair Dirac-Coulomb-Breit Hamiltonian, together with a finite B -spline basis set to expand the large and small components of the Dirac wave function. Our method is applied to calculate ionization energies, reduced matrix elements, lifetimes, and polarizabilities for many states of atomic francium. To evaluate uncertainties of our results and investigate the role of electron correlation effects, we carry out calculations using approximated models at different levels. The quality of our calculations is assessed by comparing with available experimental results, showing a good agreement. In addition, the tune-out wavelengths of the ground state in the range of 340-800 nm, the magic wavelengths for the transition 7 s -8 s in the range of 800-1500 nm and the transition 7 s -7 p in the range of 600-1500 nm are determined by evaluating the dynamic polarizabilities of the 7 s , 8 s , and 7 p states for a linearly polarized light. These tune-out and magic wavelengths may be useful for laser cooling and trapping of the Fr atom, and for related high-precision trapping measurements.

  17. A simple image based method for obtaining electron density and atomic number in dual energy CT

    Science.gov (United States)

    Szczykutowicz, Timothy P.; Qi, Zhihua; Chen, Guang-Hong

    2011-03-01

    The extraction of electron density and atomic number information in computed tomography is possible when image values can be sampled using two different effective energies. The foundation for this extraction lies in the ability to express the linear attenuation coefficient using two basis functions that are dependent on electron density and atomic number over the diagnostic energy range used in CT. Material basis functions separate images into clinically familiar quantities such as 'bone' images and 'soft tissue' images. Physically, all basis function choices represent the expression of the linear attenuation coefficient in terms of a photoelectric and a Compton scattering term. The purpose of this work is to develop a simple dual energy decomposition method that requires no a priori knowledge about the energy characteristics of the imaging system. It is shown that the weighted sum of two basis images yields an electron density image where the weights for each basis image are the electron density of that basis image's basis material. Using the electron density image, effective atomic number information can also be obtained. These methods are performed solely in the image domain and require no spectrum or detector energy response information as required by some other dual energy decomposition methods.

  18. Multiscale approach for the construction of equilibrated all-atom models of a poly(ethylene glycol)-based hydrogel

    Science.gov (United States)

    Li, Xianfeng; Murthy, N. Sanjeeva; Becker, Matthew L.; Latour, Robert A.

    2016-01-01

    A multiscale modeling approach is presented for the efficient construction of an equilibrated all-atom model of a cross-linked poly(ethylene glycol) (PEG)-based hydrogel using the all-atom polymer consistent force field (PCFF). The final equilibrated all-atom model was built with a systematic simulation toolset consisting of three consecutive parts: (1) building a global cross-linked PEG-chain network at experimentally determined cross-link density using an on-lattice Monte Carlo method based on the bond fluctuation model, (2) recovering the local molecular structure of the network by transitioning from the lattice model to an off-lattice coarse-grained (CG) model parameterized from PCFF, followed by equilibration using high performance molecular dynamics methods, and (3) recovering the atomistic structure of the network by reverse mapping from the equilibrated CG structure, hydrating the structure with explicitly represented water, followed by final equilibration using PCFF parameterization. The developed three-stage modeling approach has application to a wide range of other complex macromolecular hydrogel systems, including the integration of peptide, protein, and/or drug molecules as side-chains within the hydrogel network for the incorporation of bioactivity for tissue engineering, regenerative medicine, and drug delivery applications. PMID:27013229

  19. A neural network potential-energy surface for the water dimer based on environment-dependent atomic energies and charges

    Science.gov (United States)

    Morawietz, Tobias; Sharma, Vikas; Behler, Jörg

    2012-02-01

    Understanding the unique properties of water still represents a significant challenge for theory and experiment. Computer simulations by molecular dynamics require a reliable description of the atomic interactions, and in recent decades countless water potentials have been reported in the literature. Still, most of these potentials contain significant approximations, for instance a frozen internal structure of the individual water monomers. Artificial neural networks (NNs) offer a promising way for the construction of very accurate potential-energy surfaces taking all degrees of freedom explicitly into account. These potentials are based on electronic structure calculations for representative configurations, which are then interpolated to a continuous energy surface that can be evaluated many orders of magnitude faster. We present a full-dimensional NN potential for the water dimer as a first step towards the construction of a NN potential for liquid water. This many-body potential is based on environment-dependent atomic energy contributions, and long-range electrostatic interactions are incorporated employing environment-dependent atomic charges. We show that the potential and derived properties like vibrational frequencies are in excellent agreement with the underlying reference density-functional theory calculations.

  20. Clock drawing: analysis in a retirement community.

    Science.gov (United States)

    Paganini-Hill, A; Clark, L J; Henderson, V W; Birge, S J

    2001-07-01

    To test the hypothesis that performance on a clock-drawing test in a mailed survey to an older cohort is associated with known and potential risk and protective factors for Alzheimer's disease. The Leisure World Cohort Study is an ongoing study, begun in 1981, of nearly 14,000 older adults. In November 1992, the 8,406 living cohort members were mailed a follow-up questionnaire. Leisure World Laguna Hills, a southern California retirement community. The study population is a predominantly white, well-educated, upper-middle-class community; approximately two-thirds are women. Data from 4,843 cohort members (mean age 80 years; range 52-101) were analyzed. The questionnaire included a clock-drawing task: a predrawn circle 3 1/4 inches (8.3 cm) in diameter was provided with instructions "In the circle below, draw in the numbers as on a clock face. Make no erasures." Clocks were scored on 7 items: all numbers 1-12 present without adding extra or omitting numbers, sequencing of numbers, position of numbers, orientation of numbers to circle, consistent number style (either Arabic or Roman), tilt of numbers, and superfluous marks. A total clock score was calculated by summing the number of correct individual items (0-7). We also classified individuals as cognitively impaired by a previously suggested method: individuals were affected if they did not have three numbers drawn in the upper left quadrant of the clock face. Ninety percent or more of the participants across all ages placed the numbers 1 to 12 on their clocks without omissions or additions; 35% completed the clock drawing without error. The mean total clock scores decreased with each successive 5-year age group in both men and women. Regression analysis indicated a significant effect for age (b = -0.15, P education (b = 0.05, P =.0001), smoking (b = 0.13, P =.03), and female gender (b = -0.05, P =.05) and a marginally significant effect of nonrheumatoid arthritis (b = 0.05, P =.07) on total clock score. No other

  1. Characterization of nano-sized precipitates in a Mn-based lean maraging steel by atom probe tomography

    Energy Technology Data Exchange (ETDEWEB)

    Millan, J.; Ponge, D.; Raabe, D.; Choi, P.; Dmitrieva, O. [Max-Planck-Institut fuer Eisenforschung, Duesseldorf (Germany)

    2011-02-15

    We present atom probe tomography results of a precipitation-hardened Mn-based maraging steel (9 Mn, 1.9 Ni, 0.6 Mo, 1.1 Ti, 0.33 Al; in at.%). The alloy is characterized by the surprising effect that both, strength and total elongation increase upon aging. The material reveals a high ultimate tensile strength (UTS) up to 1 GPa and good ductility (total elongation (TE) of up to 15% in a tensile test) depending on aging conditions. We map the evolution of the precipitates after 450 C aging treatment using atom probe tomography in terms of chemical composition and size distribution. (Copyright copyright 2011 Wiley-VCH Verlag GmbH and Co. KGaA, Weinheim)

  2. Atomic-scale insight into the origin of pyridine inhibition of MoS2-based hydrotreating catalysts

    DEFF Research Database (Denmark)

    Temel, Burcin; Tuxen, Anders K.; Kibsgaard, Jakob

    2010-01-01

    Basic nitrogen-containing compounds such as pyridine are well known to be inhibitors of the hydrodesulfurization (HDS) reaction for the MoS2-based catalysts. From an interplay of scanning tunneling microscopy (STM) experiments and density functional theory (DFT) calculations, atomic-scale insight...... also at the edges. The calculated DFT energies and simulated STM images allowed us to conclude that these species are pyridinium ions located at the catalytically active brim sites. Furthermore, the DFT results for the vibrational modes of the adsorbed pyridinium species agree well with those observed...... in earlier IR experiments on high surface alumina-supported MoS2 catalyst. The adsorption sites appear to be very similar to the brim sites involved in hydrogenation reactions in HDS. Thus, the combined STM and DFT results provide new atomic-scale insight into the inhibition effect of basic N...

  3. Mapping of Proteomic Composition on the Surfaces of Bacillus spores by Atomic Force Microscopy-based Immunolabeling

    Energy Technology Data Exchange (ETDEWEB)

    Plomp, M; Malkin, A J

    2008-06-02

    Atomic force microscopy provides a unique capability to image high-resolution architecture and structural dynamics of pathogens (e.g. viruses, bacteria and bacterial spores) at near molecular resolution in native conditions. Further development of atomic force microscopy in order to enable the correlation of pathogen protein surface structures with specific gene products is essential to understand the mechanisms of the pathogen life cycle. We have applied an AFM-based immunolabeling technique for the proteomic mapping of macromolecular structures through the visualization of the binding of antibodies, conjugated with nanogold particles, to specific epitopes on Bacillus spore surfaces. This information is generated while simultaneously acquiring the surface morphology of the pathogen. The immunospecificity of this labeling method was established through the utilization of specific polyclonal and monoclonal antibodies that target spore coat and exosporium epitopes of Bacillus atrophaeus and Bacillus anthracis spores.

  4. Imaging method for downward-looking sparse linear array three-dimensional synthetic aperture radar based on reweighted atomic norm

    Science.gov (United States)

    Bao, Qian; Han, Kuoye; Lin, Yun; Zhang, Bingchen; Liu, Jianguo; Hong, Wen

    2016-01-01

    We propose an imaging algorithm for downward-looking sparse linear array three-dimensional synthetic aperture radar (DLSLA 3-D SAR) in the circumstance of cross-track sparse and nonuniform array configuration. Considering the off-grid effect and the resolution improvement, the algorithm combines pseudo-polar formatting algorithm, reweighed atomic norm minimization (RANM), and a parametric relaxation-based cyclic approach (RELAX) to improve the imaging performance with a reduced number of array antennas. RANM is employed in the cross-track imaging after pseudo-polar formatting the DLSLA 3-D SAR echo signal, then the reconstructed results are refined by RELAX. By taking advantage of the reweighted scheme, RANM can improve the resolution of the atomic norm minimization, and outperforms discretized compressive sensing schemes that suffer from off-grid effect. The simulated and real data experiments of DLSLA 3-D SAR verify the performance of the proposed algorithm.

  5. Mobile setup for synchrotron based in situ characterization during thermal and plasma-enhanced atomic layer deposition

    Science.gov (United States)

    Dendooven, Jolien; Solano, Eduardo; Minjauw, Matthias M.; Van de Kerckhove, Kevin; Coati, Alessandro; Fonda, Emiliano; Portale, Giuseppe; Garreau, Yves; Detavernier, Christophe

    2016-11-01

    We report the design of a mobile setup for synchrotron based in situ studies during atomic layer processing. The system was designed to facilitate in situ grazing incidence small angle x-ray scattering (GISAXS), x-ray fluorescence (XRF), and x-ray absorption spectroscopy measurements at synchrotron facilities. The setup consists of a compact high vacuum pump-type reactor for atomic layer deposition (ALD). The presence of a remote radio frequency plasma source enables in situ experiments during both thermal as well as plasma-enhanced ALD. The system has been successfully installed at different beam line end stations at the European Synchrotron Radiation Facility and SOLEIL synchrotrons. Examples are discussed of in situ GISAXS and XRF measurements during thermal and plasma-enhanced ALD growth of ruthenium from RuO4 (ToRuS™, Air Liquide) and H2 or H2 plasma, providing insights in the nucleation behavior of these processes.

  6. Al2O3 on WSe2 by ozone based atomic layer deposition: Nucleation and interface study

    Directory of Open Access Journals (Sweden)

    Angelica Azcatl

    2017-08-01

    Full Text Available In this work, the atomic layer deposition process using ozone and trimethylaluminum (TMA for the deposition of Al2O3 films on WSe2 was investigated. It was found that the ozone-based atomic layer deposition enhanced the nucleation of Al2O3 in comparison to the water/TMA process. In addition, the chemistry at the Al2O3/WSe2 interface and the surface morphology of the Al2O3 films exhibited a dependence on the deposition temperature. A non-covalent functionalizing effect of ozone on WSe2 at low deposition temperatures 30 °C was identified which prevented the formation of pinholes in the Al2O3 films. These findings aim to provide an approach to obtain high-quality gate dielectrics on WSe2 for two-dimensional transistor applications.

  7. Circadian clock genes in Drosophila: recent developments.

    Science.gov (United States)

    Subramanian, P; Balamurugan, E; Suthakar, G

    2003-08-01

    Circadian rhythms provide a temporal framework to living organisms and are established in a majority of eukaryotes and in a few prokaryotes. The molecular mechanisms of circadian clock is constantly being investigated in Drosophila melanogaster. The core of the clock mechanism was described by a transcription-translation feedback loop model involving period (per), timeless (tim), dclock and cycle genes. However, recent research has identified multiple feedback loops controlling rhythm generation and expression. Novel mutations of timeless throw more light on the functions of per and tim products. Analysis of pdf neuropeptide gene (expressed in circadian pacemaker cells in Drosophila), indicate that PDF acts as the principal circadian transmitter and is involved in output pathways. The product of cryptochrome is known to function as a circadian photoreceptor as well as component of the circadian clock. This review focuses on the recent progress in the field of molecular rhythm research in the fruit fly. The gene(s) and the gene product(s) that are involved in the transmission of environmental information to the clock, as well as the timing signals from the clock outward to cellular functions are remain to be determined.

  8. Dating phylogenies with hybrid local molecular clocks.

    Directory of Open Access Journals (Sweden)

    Stéphane Aris-Brosou

    Full Text Available BACKGROUND: Because rates of evolution and species divergence times cannot be estimated directly from molecular data, all current dating methods require that specific assumptions be made before inferring any divergence time. These assumptions typically bear either on rates of molecular evolution (molecular clock hypothesis, local clocks models or on both rates and times (penalized likelihood, Bayesian methods. However, most of these assumptions can affect estimated dates, oftentimes because they underestimate large amounts of rate change. PRINCIPAL FINDINGS: A significant modification to a recently proposed ad hoc rate-smoothing algorithm is described, in which local molecular clocks are automatically placed on a phylogeny. This modification makes use of hybrid approaches that borrow from recent theoretical developments in microarray data analysis. An ad hoc integration of phylogenetic uncertainty under these local clock models is also described. The performance and accuracy of the new methods are evaluated by reanalyzing three published data sets. CONCLUSIONS: It is shown that the new maximum likelihood hybrid methods can perform better than penalized likelihood and almost as well as uncorrelated Bayesian models. However, the new methods still tend to underestimate the actual amount of rate change. This work demonstrates the difficulty of estimating divergence times using local molecular clocks.

  9. Regulation of clock-controlled genes in mammals.

    Directory of Open Access Journals (Sweden)

    Katarzyna Bozek

    Full Text Available The complexity of tissue- and day time-specific regulation of thousands of clock-controlled genes (CCGs suggests that many regulatory mechanisms contribute to the transcriptional output of the circadian clock. We aim to predict these mechanisms using a large scale promoter analysis of CCGs.Our study is based on a meta-analysis of DNA-array data from rodent tissues. We searched in the promoter regions of 2065 CCGs for highly overrepresented transcription factor binding sites. In order to compensate the relatively high GC-content of CCG promoters, a novel background model to avoid a bias towards GC-rich motifs was employed. We found that many of the transcription factors with overrepresented binding sites in CCG promoters exhibit themselves circadian rhythms. Among the predicted factors are known regulators such as CLOCKratioBMAL1, DBP, HLF, E4BP4, CREB, RORalpha and the recently described regulators HSF1, STAT3, SP1 and HNF-4alpha. As additional promising candidates of circadian transcriptional regulators PAX-4, C/EBP, EVI-1, IRF, E2F, AP-1, HIF-1 and NF-Y were identified. Moreover, GC-rich motifs (SP1, EGR, ZF5, AP-2, WT1, NRF-1 and AT-rich motifs (MEF-2, HMGIY, HNF-1, OCT-1 are significantly overrepresented in promoter regions of CCGs. Putative tissue-specific binding sites such as HNF-3 for liver, NKX2.5 for heart or Myogenin for skeletal muscle were found. The regulation of the erythropoietin (Epo gene was analysed, which exhibits many binding sites for circadian regulators. We provide experimental evidence for its circadian regulated expression in the adult murine kidney. Basing on a comprehensive literature search we integrate our predictions into a regulatory network of core clock and clock-controlled genes. Our large scale analysis of the CCG promoters reveals the complexity and extensiveness of the circadian regulation in mammals. Results of this study point to connections of the circadian clock to other functional systems including

  10. Regulation of Clock-Controlled Genes in Mammals

    Science.gov (United States)

    Kielbasa, Szymon M.; Heine, Markus; Dame, Christof; Kramer, Achim; Herzel, Hanspeter

    2009-01-01

    The complexity of tissue- and day time-specific regulation of thousands of clock-controlled genes (CCGs) suggests that many regulatory mechanisms contribute to the transcriptional output of the circadian clock. We aim to predict these mechanisms using a large scale promoter analysis of CCGs. Our study is based on a meta-analysis of DNA-array data from rodent tissues. We searched in the promoter regions of 2065 CCGs for highly overrepresented transcription factor binding sites. In order to compensate the relatively high GC-content of CCG promoters, a novel background model to avoid a bias towards GC-rich motifs was employed. We found that many of the transcription factors with overrepresented binding sites in CCG promoters exhibit themselves circadian rhythms. Among the predicted factors are known regulators such as CLOCK∶BMAL1, DBP, HLF, E4BP4, CREB, RORα and the recently described regulators HSF1, STAT3, SP1 and HNF-4α. As additional promising candidates of circadian transcriptional regulators PAX-4, C/EBP, EVI-1, IRF, E2F, AP-1, HIF-1 and NF-Y were identified. Moreover, GC-rich motifs (SP1, EGR, ZF5, AP-2, WT1, NRF-1) and AT-rich motifs (MEF-2, HMGIY, HNF-1, OCT-1) are significantly overrepresented in promoter regions of CCGs. Putative tissue-specific binding sites such as HNF-3 for liver, NKX2.5 for heart or Myogenin for skeletal muscle were found. The regulation of the erythropoietin (Epo) gene was analysed, which exhibits many binding sites for circadian regulators. We provide experimental evidence for its circadian regulated expression in the adult murine kidney. Basing on a comprehensive literature search we integrate our predictions into a regulatory network of core clock and clock-controlled genes. Our large scale analysis of the CCG promoters reveals the complexity and extensiveness of the circadian regulation in mammals. Results of this study point to connections of the circadian clock to other functional systems including metabolism, endocrine

  11. BDS Precise Point Positioning for Seismic Displacements Monitoring: Benefit from the High-Rate Satellite Clock Corrections

    Directory of Open Access Journals (Sweden)

    Tao Geng

    2016-12-01

    Full Text Available In order to satisfy the requirement of high-rate high-precision applications, 1 Hz BeiDou Navigation Satellite System (BDS satellite clock corrections are generated based on precise orbit products, and the quality of the generated clock products is assessed by comparing with those from the other analysis centers. The comparisons show that the root mean square (RMS of clock errors of geostationary Earth orbits (GEO is about 0.63 ns, whereas those of inclined geosynchronous orbits (IGSO and medium Earth orbits (MEO are about 0.2–0.3 ns and 0.1 ns, respectively. Then, the 1 Hz clock products are used for BDS precise point positioning (PPP to retrieve seismic displacements of the 2015 Mw 7.8 Gorkha, Nepal, earthquake. The derived seismic displacements from BDS PPP are consistent with those from the Global Positioning System (GPS PPP, with RMS of 0.29, 0.38, and 1.08 cm in east, north, and vertical components, respectively. In addition, the BDS PPP solutions with different clock intervals of 1 s, 5 s, 30 s, and 300 s are processed and compared with each other. The results demonstrate that PPP with 300 s clock intervals is the worst and that with 1 s clock interval is the best. For the scenario of 5 s clock intervals, the precision of PPP solutions is almost the same to 1 s results. Considering the time consumption of clock estimates, we suggest that 5 s clock interval is competent for high-rate BDS solutions.

  12. BDS Precise Point Positioning for Seismic Displacements Monitoring: Benefit from the High-Rate Satellite Clock Corrections.

    Science.gov (United States)

    Geng, Tao; Su, Xing; Fang, Rongxin; Xie, Xin; Zhao, Qile; Liu, Jingnan

    2016-12-20

    In order to satisfy the requirement of high-rate high-precision applications, 1 Hz BeiDou Navigation Satellite System (BDS) satellite clock corrections are generated based on precise orbit products, and the quality of the generated clock products is assessed by comparing with those from the other analysis centers. The comparisons show that the root mean square (RMS) of clock errors of geostationary Earth orbits (GEO) is about 0.63 ns, whereas those of inclined geosynchronous orbits (IGSO) and medium Earth orbits (MEO) are about 0.2-0.3 ns and 0.1 ns, respectively. Then, the 1 Hz clock products are used for BDS precise point positioning (PPP) to retrieve seismic displacements of the 2015 Mw 7.8 Gorkha, Nepal, earthquake. The derived seismic displacements from BDS PPP are consistent with those from the Global Positioning System (GPS) PPP, with RMS of 0.29, 0.38, and 1.08 cm in east, north, and vertical components, respectively. In addition, the BDS PPP solutions with different clock intervals of 1 s, 5 s, 30 s, and 300 s are processed and compared with each other. The results demonstrate that PPP with 300 s clock intervals is the worst and that with 1 s clock interval is the best. For the scenario of 5 s clock intervals, the precision of PPP solutions is almost the same to 1 s results. Considering the time consumption of clock estimates, we suggest that 5 s clock interval is competent for high-rate BDS solutions.

  13. Toward the beginning of time: circadian rhythms in metabolism precede rhythms in clock gene expression in mouse embryonic stem cells.

    Directory of Open Access Journals (Sweden)

    Jiffin K Paulose

    Full Text Available The appearance, progression, and potential role for circadian rhythms during early development have previously focused mainly on the suprachiasmatic nucleus (SCN and peri- and postnatal expression of canonical clock genes. More recently, gene expression studies in embryonic stem cells have shown that some clock genes are expressed in undifferentiated cells; however rhythmicity was only established when cells are directed toward a neural fate. These studies also concluded that a functional clock is not present in ESCs, based solely on their gene expression. The null hypothesis underlying the present study is that embryonic stem cells become rhythmic in both clock gene expression and glucose utilization only when allowed to spontaneously differentiate. Undifferentiated stem cells (ESCs, n = 6 cultures/timepoint for all experiments were either maintained in their pluripotent state or released into differentiation (dESCs, n = 6 cultures/timepoint for all experiments. Glucose utilization was assayed through 2-deoxyglucose uptake measurement, and clock gene and glucose transporter expression was assayed every 4 hours for 2 days in ESCs and dESCs by quantitative PCR (qPCR in the same cell lysates. Undifferentiated stem cells expressed a self-sustained rhythm in glucose uptake that was not coincident with rhythmic expression of clock genes. This physiological rhythm was paralleled by glucose transporter mRNA expression. Upon differentiation, circadian patterns of some but not all clock genes were expressed, and the amplitude of the glucose utilization rhythm was enhanced in dESCs. These data provide the earliest evidence of a functional circadian clock, in addition to further challenging the idea that rhythmic transcription of clock genes are necessary for rhythmic physiological output and suggest a role for a clock-controlled physiology in the earliest stages of development.

  14. Evolutionary links between circadian clocks and photoperiodic diapause in insects.

    Science.gov (United States)

    Meuti, Megan E; Denlinger, David L

    2013-07-01

    In this article, we explore links between circadian clocks and the clock involved in photoperiodic regulation of diapause in insects. Classical resonance (Nanda-Hamner) and night interruption (Bünsow) experiments suggest a circadian basis for the diapause response in nearly all insects that have been studied. Neuroanatomical studies reveal physical connections between circadian clock cells and centers controlling the photoperiodic diapause response, and both mutations and knockdown of clock genes with RNA interference (RNAi) point to a connection between the clock genes and photoperiodic induction of diapause. We discuss the challenges of determining whether the clock, as a functioning module, or individual clock genes acting pleiotropically are responsible for the photoperiodic regulation of diapause, and how a stable, central circadian clock could be linked to plastic photoperiodic responses without compromising the clock's essential functions. Although we still lack an understanding of the exact mechanisms whereby insects measure day/night length, continued classical and neuroanatomical approaches, as well as forward and reverse genetic experiments, are highly complementary and should enable us to decipher the diverse ways in which circadian clocks have been involved in the evolution of photoperiodic induction of diapause in insects. The components of circadian clocks vary among insect species, and diapause appears to have evolved independently numerous times, thus, we anticipate that not all photoperiodic clocks of insects will interact with circadian clocks in the same fashion.

  15. Sugars, the clock and transition to flowering

    Directory of Open Access Journals (Sweden)

    Mohammad Reza eBolouri Moghaddam

    2013-02-01

    Full Text Available Sugars do not only act as source of energy, but they also act as signals in plants. This mini review summarizes the emerging links between sucrose-mediated signaling and the cellular networks involved in flowering time control and defense. Cross-talks with gibberellin (GA and jasmonate (JA signaling pathways are highlighted. The circadian clock fulfills a crucial role at the heart of cellular networks and the bilateral relation between sugar signaling and the clock is discussed. It is proposed that important factors controlling plant growth (DELLAs, PIFs, invertases and trehalose- 6-phosphate or T6P might fulfill central roles in the transition to flowering as well. The emerging concept of ‘sweet immunity’, modulated by the clock, might at least partly rely on a sucrose-specific signaling pathway that needs further exploration.

  16. RNA-seq analysis of Drosophila clock and non-clock neurons reveals neuron-specific cycling and novel candidate neuropeptides

    Science.gov (United States)

    Luo, Weifei; Wiyanto, Evelyn; Rahman, Reazur; Guo, Fang; Shafer, Orie

    2017-01-01

    Locomotor activity rhythms are controlled by a network of ~150 circadian neurons within the adult Drosophila brain. They are subdivided based on their anatomical locations and properties. We profiled transcripts “around the clock” from three key groups of circadian neurons with different functions. We also profiled a non-circadian outgroup, dopaminergic (TH) neurons. They have cycling transcripts but fewer than clock neurons as well as low expression and poor cycling of clock gene transcripts. This suggests that TH neurons do not have a canonical circadian clock and that their gene expression cycling is driven by brain systemic cues. The three circadian groups are surprisingly diverse in their cycling transcripts and overall gene expression patterns, which include known and putative novel neuropeptides. Even the overall phase distributions of cycling transcripts are distinct, indicating that different regulatory principles govern transcript oscillations. This surprising cell-type diversity parallels the functional heterogeneity of the different neurons. PMID:28182648

  17. Ultracold photodissociation and progress towards a molecular lattice clock with 88 Sr

    Science.gov (United States)

    Lee, Chih-Hsi; McGuyer, Bart; McDonald, Mickey; Apfelback, Florian; Grier, Andrew; Zelevinsky, Tanya

    2016-05-01

    Techniques originally developed for the construction of atomic clocks can be adapted to the study of ultracold molecules, with applications ranging from studies of ultracold chemistry to searches for new physics. We present recent experimental results involving studies of fully quantum state-resolved photodissociation of 88 Sr2 molecules, as well as progress toward building a molecular clock. First, our system has allowed for precise, quantum state-resolved photodissociation studies, revealing not only excellent control over quantum states but also a more accurate way to describe the photodissociation of diatomic molecules and access ultracold chemistry. Second, the molecular clock will allow us to search for a possible time variation of the proton-electron mass ratio. The ``oscillator'' of such a molecular clock would consist of the frequency difference between two lasers driving a two-photon Raman transition between deeply and intermediately-bound rovibrational levels in the electronic ground state. Accomplishing this task requires exploring several research directions, including the precision spectroscopy of bound states and developing tools for the control and minimization of differential lattice light shifts.

  18. Sample-Clock Phase-Control Feedback

    Science.gov (United States)

    Quirk, Kevin J.; Gin, Jonathan W.; Nguyen, Danh H.; Nguyen, Huy

    2012-01-01

    To demodulate a communication signal, a receiver must recover and synchronize to the symbol timing of a received waveform. In a system that utilizes digital sampling, the fidelity of synchronization is limited by the time between the symbol boundary and closest sample time location. To reduce this error, one typically uses a sample clock in excess of the symbol rate in order to provide multiple samples per symbol, thereby lowering the error limit to a fraction of a symbol time. For systems with a large modulation bandwidth, the required sample clock rate is prohibitive due to current technological barriers and processing complexity. With precise control of the phase of the sample clock, one can sample the received signal at times arbitrarily close to the symbol boundary, thus obviating the need, from a synchronization perspective, for multiple samples per symbol. Sample-clock phase-control feedback was developed for use in the demodulation of an optical communication signal, where multi-GHz modulation bandwidths would require prohibitively large sample clock frequencies for rates in excess of the symbol rate. A custom mixedsignal (RF/digital) offset phase-locked loop circuit was developed to control the phase of the 6.4-GHz clock that samples the photon-counting detector output. The offset phase-locked loop is driven by a feedback mechanism that continuously corrects for variation in the symbol time due to motion between the transmitter and receiver as well as oscillator instability. This innovation will allow significant improvements in receiver throughput; for example, the throughput of a pulse-position modulation (PPM) with 16 slots can increase from 188 Mb/s to 1.5 Gb/s.

  19. Clock frequency estimation under spontaneous emission

    Science.gov (United States)

    Qin, Xi-Zhou; Huang, Jia-Hao; Zhong, Hong-Hua; Lee, Chaohong

    2018-02-01

    We investigate the quantum dynamics of a driven two-level system under spontaneous emission and its application in clock frequency estimation. By using the Lindblad equation to describe the system, we analytically obtain its exact solutions, which show three different regimes: Rabi oscillation, damped oscillation, and overdamped decay. From the analytical solutions, we explore how the spontaneous emission affects the clock frequency estimation. We find that under a moderate spontaneous emission rate, the transition frequency can still be inferred from the Rabi oscillation. Our results enable potential practical applications in frequency measurement and quantum control under decoherence.

  20. Clocking Scheme for Switched-Capacitor Circuits

    DEFF Research Database (Denmark)

    Steensgaard-Madsen, Jesper

    1998-01-01

    A novel clocking scheme for switched-capacitor (SC) circuits is presented. It can enhance the understanding of SC circuits and the errors caused by MOSFET (MOS) switches. Charge errors, and techniques to make SC circuits less sensitive to them are discussed.......A novel clocking scheme for switched-capacitor (SC) circuits is presented. It can enhance the understanding of SC circuits and the errors caused by MOSFET (MOS) switches. Charge errors, and techniques to make SC circuits less sensitive to them are discussed....