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Sample records for atom chip based

  1. Manipulating Neutral Atoms in Chip-Based Magnetic Traps

    Science.gov (United States)

    Aveline, David; Thompson, Robert; Lundblad, Nathan; Maleki, Lute; Yu, Nan; Kohel, James

    2009-01-01

    Several techniques for manipulating neutral atoms (more precisely, ultracold clouds of neutral atoms) in chip-based magnetic traps and atomic waveguides have been demonstrated. Such traps and waveguides are promising components of future quantum sensors that would offer sensitivities much greater than those of conventional sensors. Potential applications include gyroscopy and basic research in physical phenomena that involve gravitational and/or electromagnetic fields. The developed techniques make it possible to control atoms with greater versatility and dexterity than were previously possible and, hence, can be expected to contribute to the value of chip-based magnetic traps and atomic waveguides. The basic principle of these techniques is to control gradient magnetic fields with suitable timing so as to alter a trap to exert position-, velocity-, and/or time-dependent forces on atoms in the trap to obtain desired effects. The trap magnetic fields are generated by controlled electric currents flowing in both macroscopic off-chip electromagnet coils and microscopic wires on the surface of the chip. The methods are best explained in terms of examples. Rather than simply allowing atoms to expand freely into an atomic waveguide, one can give them a controllable push by switching on an externally generated or a chip-based gradient magnetic field. This push can increase the speed of the atoms, typically from about 5 to about 20 cm/s. Applying a non-linear magnetic-field gradient exerts different forces on atoms in different positions a phenomenon that one can exploit by introducing a delay between releasing atoms into the waveguide and turning on the magnetic field.

  2. Ultracold atoms on atom chips

    DEFF Research Database (Denmark)

    Krüger, Peter; Hofferberth, S.; Haller, E.

    2005-01-01

    Miniaturized potentials near the surface of atom chips can be used as flexible and versatile tools for the manipulation of ultracold atoms on a microscale. The full scope of possibilities is only accessible if atom-surface distances can be reduced to microns. We discuss experiments in this regime...

  3. Atom-chip-based quantum gravimetry for the precise determination of absolute gravity

    Science.gov (United States)

    Abend, Sven; Schubert, Christian; Ertmer, Wolfgang; Rasel, Ernst

    2017-04-01

    We present a novel technique for the precise measurement of absolute local gravity with a quantum gravimeter based on an atom chip. Atom interferometry utilizes the interference of matter waves interrogated by laser light to read out inertial forces. Today's generation of these devices typically operate with test mass samples, that consists of ensembles of laser cooled atoms. Their performance is limited by the velocity spread and finite-size of the test masses that impose systematic uncertainties at the level of a few μGal [1]. Rather than laser cooled atoms we employ quantum degenerate ensembles, so called Bose-Einstein condensates [2], as ultra-sensitive probes for gravity. These sources offer unique properties that will allow to overcome the current limitations in the next generation of sensors. Furthermore, atom-chip technology offers the possibility to generate Bose-Einstein condensates in a fast and reliable way. We present a lab-based prototype that uses the atom chip itself to retro-reflect the interrogation laser and thus serves as inertial reference inside the vacuum [3]. With this setup, it is possible to demonstrate all necessary steps to measure gravity, including the preparation of the source, spanning an interferometer as well as the detection of the output signal. All steps are pursued on a baseline of 1 cm right below the atom chip and to analyze relevant systematic effects. In the framework of the center of excellence geoQ a next generation device is under construction at the Institut für Quantenoptik, that will target for in-field measurements. This device will feature a state-of-the-art atom-chip source with a high-flux of ultra-cold atoms at a repetition rate of 1-2 Hz [4]. The device will be characterized in cooperation with the Müller group at the Institut für Erdmessung the sensor and finally employed in a campaign to measure the Fennoscandian uplift at the level of 1 μGal. The presented work is supported by the CRC 1227 DQ-mat, the

  4. Optical lattice on an atom chip

    DEFF Research Database (Denmark)

    Gallego, D.; Hofferberth, S.; Schumm, Thorsten

    2009-01-01

    Optical dipole traps and atom chips are two very powerful tools for the quantum manipulation of neutral atoms. We demonstrate that both methods can be combined by creating an optical lattice potential on an atom chip. A red-detuned laser beam is retroreflected using the atom chip surface as a high......-quality mirror, generating a vertical array of purely optical oblate traps. We transfer thermal atoms from the chip into the lattice and observe cooling into the two-dimensional regime. Using a chip-generated Bose-Einstein condensate, we demonstrate coherent Bloch oscillations in the lattice....

  5. Ex Vacuo Atom Chip Bose-Einstein Condensate (BEC)

    CERN Document Server

    Squires, Matthew B; Kasch, Brian; Stickney, James A; Erickson, Christopher J; Crow, Jonathan A R; Carlson, Evan J; Burke, John H

    2016-01-01

    Ex vacuo atom chips, used in conjunction with a custom thin walled vacuum chamber, have enabled the rapid replacement of atom chips for magnetically trapped cold atom experiments. Atoms were trapped in $>2$ kHz magnetic traps created using high power atom chips. The thin walled vacuum chamber allowed the atoms to be trapped $\\lesssim1$ mm from the atom chip conductors which were located outside of the vacuum system. Placing the atom chip outside of the vacuum simplified the electrical connections and improved thermal management. Using a multi-lead Z-wire chip design, a Bose-Einstein condensate was produced with an external atom chip. Vacuum and optical conditions were maintained while replacing the Z-wire chip with a newly designed cross-wire chip. The atom chips were exchanged and an initial magnetic trap was achieved in less than three hours.

  6. Absorption imaging of ultracold atoms on atom chips

    DEFF Research Database (Denmark)

    Smith, David A.; Aigner, Simon; Hofferberth, Sebastian

    2011-01-01

    Imaging ultracold atomic gases close to surfaces is an important tool for the detailed analysis of experiments carried out using atom chips. We describe the critical factors that need be considered, especially when the imaging beam is purposely reflected from the surface. In particular we present...... methods to measure the atom-surface distance, which is a prerequisite for magnetic field imaging and studies of atom surface-interactions....

  7. Microfabricated cells for chip-scale atomic clock based on coherent population trapping: Fabrication and investigation

    Directory of Open Access Journals (Sweden)

    S.V. Ermak

    2015-03-01

    Full Text Available A universal method for fabrication of miniature cells for frequency standards and quantum magnetometers containing 87Rb atoms in the atmosphere of inert gas neon based on integrated technologies is considered. The results of experimental studies of coherent population trapping signals observed for a series of cells which provided recovery of vapors of an alkali metal from the rubidium dichromate salt with the help of laser radiation are presented. The coherent population trapping signals with a typical linewidth of 2–3 kHz and a signal-to-noise ratio of 1500 in the 1-Hz bandwidth were observed, which allows one to provide a relative frequency stability of atomic clock of 10−11 at 100 s.

  8. Atom chip apparatus for experiments with ultracold rubidium and potassium gases.

    Science.gov (United States)

    Ivory, M K; Ziltz, A R; Fancher, C T; Pyle, A J; Sensharma, A; Chase, B; Field, J P; Garcia, A; Jervis, D; Aubin, S

    2014-04-01

    We present a dual chamber atom chip apparatus for generating ultracold (87)Rb and (39)K atomic gases. The apparatus produces quasi-pure Bose-Einstein condensates of 10(4) (87)Rb atoms in an atom chip trap that features a dimple and good optical access. We have also demonstrated production of ultracold (39)K and subsequent loading into the chip trap. We describe the details of the dual chamber vacuum system, the cooling lasers, the magnetic trap, the multicoil magnetic transport system, the atom chip, and two optical dipole traps. Due in part to the use of light-induced atom desorption, the laser cooling chamber features a sufficiently good vacuum to also support optical dipole trap-based experiments. The apparatus is well suited for studies of atom-surface forces, quantum pumping and transport experiments, atom interferometry, novel chip-based traps, and studies of one-dimensional many-body systems.

  9. Electrostatic trapping and in situ detection of Rydberg atoms above chip-based transmission lines

    CERN Document Server

    Lancuba, P

    2016-01-01

    Beams of helium atoms in Rydberg-Stark states with principal quantum number $n=48$ and electric dipole moments of 4600~D have been decelerated from a mean initial longitudinal speed of 2000~m/s to zero velocity in the laboratory-fixed frame-of-reference in the continuously moving electric traps of a transmission-line decelerator. In this process accelerations up to $-1.3\\times10^{7}$~m/s$^2$ were applied, and changes in kinetic energy of $\\Delta E_{\\mathrm{kin}}=1.3\\times10^{-20}$~J ($\\Delta E_{\\mathrm{kin}}/e = 83$~meV) per atom were achieved. Guided and decelerated atoms, and those confined in stationary electrostatic traps, were detected in situ by pulsed electric field ionisation. The results of numerical calculations of particle trajectories within the decelerator have been used to characterise the observed deceleration efficiencies, and aid in the interpretation of the experimental data.

  10. Potential roughness near lithographically fabricated atom chips

    DEFF Research Database (Denmark)

    Krüger, Peter; Andersson, L. M.; Wildermuth, Stefan

    2007-01-01

    Potential roughness has been reported to severely impair experiments in magnetic microtraps. We show that these obstacles can be overcome as we measure disorder potentials that are reduced by two orders of magnitude near lithographically patterned high-quality gold layers on semiconductor atom chip...

  11. Tunable axial potentials for atom-chip waveguides

    Science.gov (United States)

    Stickney, James A.; Imhof, Eric; Kasch, Brian; Kroese, Bethany; Crow, Jonathon A. R.; Olson, Spencer E.; Squires, Matthew B.

    2017-11-01

    We present a method for generating precise, dynamically tunable magnetic potentials that can be described by a polynomial series along the axis of a cold-atom waveguide near the surface of an atom chip. With a single chip design consisting of several wire pairs, various axial potentials can be created by changing the ratio of the currents in the wires, including double wells, triple wells, and pure harmonic traps with suppression of higher-order terms. We use this method to design and fabricate a chip with modest experimental requirements. Finally, we use the chip to demonstrate a double-well potential.

  12. High-temperature operating 894.6nm-VCSELs with extremely low threshold for Cs-based chip scale atomic clocks.

    Science.gov (United States)

    Zhang, Jianwei; Zhang, Xing; Zhu, Hongbo; Zhang, Jian; Ning, Yongqiang; Qin, Li; Wang, Lijun

    2015-06-01

    We report on the design and fabrication of 894.6nm vertical-cavity surface-emitting lasers (VCSELs) with extremely low threshold at high temperatures, for use in chip-scale Cs atomic clocks. A new design method based on the analysis of the threshold gain and the desired carrier density for different active region structures was proposed to gain the low transparent current density. The increase of the threshold current at higher temperatures was successfully suppressed by introducing the large gain-cavity detuning of VCSEL. By detuning the gain-cavity mode to be -11nm, the minimum threshold current of only 0.23mA at 70 °C was achieved. The operating temperature for emitting the wavelength of 894.6nm was 110 °C, with the single mode suppression ratio (SMSR) of more than 25dB and the threshold current of only 0.32mA.

  13. Coherent matter wave optics on an atom chip

    DEFF Research Database (Denmark)

    Krüger, Peter; Hofferberth, S.; Schumm, Thorsten

    2006-01-01

    Coherent manipulation of matter waves in microscopic trapping potentials facilitates both fundamental and technological applications. Here we focus on experiments with a microscopic integrated interferometer that demonstrate coherent operation on an atom chip.......Coherent manipulation of matter waves in microscopic trapping potentials facilitates both fundamental and technological applications. Here we focus on experiments with a microscopic integrated interferometer that demonstrate coherent operation on an atom chip....

  14. The Design, Fabrication and Characterization of a Transparent Atom Chip

    Directory of Open Access Journals (Sweden)

    Ho-Chiao Chuang

    2014-06-01

    Full Text Available This study describes the design and fabrication of transparent atom chips for atomic physics experiments. A fabrication process was developed to define the wire patterns on a transparent glass substrate to create the desired magnetic field for atom trapping experiments. An area on the chip was reserved for the optical access, so that the laser light can penetrate directly through the glass substrate for the laser cooling process. Furthermore, since the thermal conductivity of the glass substrate is poorer than other common materials for atom chip substrate, for example silicon, silicon carbide, aluminum nitride. Thus, heat dissipation copper blocks are designed on the front and back of the glass substrate to improve the electrical current conduction. The testing results showed that a maximum burnout current of 2 A was measured from the wire pattern (with a width of 100 μm and a height of 20 μm without any heat dissipation design and it can increase to 2.5 A with a heat dissipation design on the front side of the atom chips. Therefore, heat dissipation copper blocks were designed and fabricated on the back of the glass substrate just under the wire patterns which increases the maximum burnout current to 4.5 A. Moreover, a maximum burnout current of 6 A was achieved when the entire backside glass substrate was recessed and a thicker copper block was electroplated, which meets most requirements of atomic physics experiments.

  15. The Design, Fabrication and Characterization of a Transparent Atom Chip

    Science.gov (United States)

    Chuang, Ho-Chiao; Huang, Chia-Shiuan; Chen, Hung-Pin; Huang, Chi-Sheng; Lin, Yu-Hsin

    2014-01-01

    This study describes the design and fabrication of transparent atom chips for atomic physics experiments. A fabrication process was developed to define the wire patterns on a transparent glass substrate to create the desired magnetic field for atom trapping experiments. An area on the chip was reserved for the optical access, so that the laser light can penetrate directly through the glass substrate for the laser cooling process. Furthermore, since the thermal conductivity of the glass substrate is poorer than other common materials for atom chip substrate, for example silicon, silicon carbide, aluminum nitride. Thus, heat dissipation copper blocks are designed on the front and back of the glass substrate to improve the electrical current conduction. The testing results showed that a maximum burnout current of 2 A was measured from the wire pattern (with a width of 100 μm and a height of 20 μm) without any heat dissipation design and it can increase to 2.5 A with a heat dissipation design on the front side of the atom chips. Therefore, heat dissipation copper blocks were designed and fabricated on the back of the glass substrate just under the wire patterns which increases the maximum burnout current to 4.5 A. Moreover, a maximum burnout current of 6 A was achieved when the entire backside glass substrate was recessed and a thicker copper block was electroplated, which meets most requirements of atomic physics experiments. PMID:24922456

  16. Hexapole-compensated magneto-optical trap on a mesoscopic atom chip

    DEFF Research Database (Denmark)

    Jöllenbeck, S.; Mahnke, J.; Randoll, R.

    2011-01-01

    Magneto-optical traps on atom chips are usually restricted to small atomic samples due to a limited capture volume caused primarily by distorted field configurations. Here we present a magneto-optical trap based on a millimeter-sized wire structure which generates a magnetic field with minimized...... distortions. Together with the loading from a high-flux two-dimensional magneto-optical trap, we achieve a loading rate of 8.4×1010 atoms/s and maximum number of 8.7×109 captured atoms. The wire structure is placed outside of the vacuum to enable a further adaptation to new scientific objectives. Since all...

  17. Microtrap arrays on magnetic film atom chips for quantum information science.

    NARCIS (Netherlands)

    Leung, Y.F.V.; Tauschinsky, A.; van Druten, N.J.; Spreeuw, R.J.C.

    2011-01-01

    We present two different strategies for developing a quantum information science platform, based on our experimental results with magnetic microtrap arrays on a magnetic-film atom chip. The first strategy aims for mesoscopic ensemble qubits in a lattice of ~5 μm period, so that qubits can be

  18. Nanoscale magnetic atom chips for quantum simulation

    NARCIS (Netherlands)

    La Rooij, A.L.

    2017-01-01

    This thesis consists of five chapters that describe the different things that I have done in the past few years which all concern my effort to create lattices of ultracold gaseous atoms at length-scales of approximately 100 nano-meters (a millionth of a decimeter, or 200 times smaller than the

  19. A double well interferometer on an atom chip

    DEFF Research Database (Denmark)

    Schumm, Thorsten; Krüger, Peter; Hofferberth, S.

    2006-01-01

    Radio-Frequency coupling between magnetically trapped atomic states allows to create versatile adiabatic dressed state potentials for neutral atom manipulation. Most notably, a single magnetic trap can be split into a double well by controlling amplitude and frequency of an oscillating magnetic...... split BECs in time of flight expansion, we realize a matter wave interferometer. The observed interference pattern exhibits a stable relative phase of the two condensates, clearly indicating a coherent splitting process. Furthermore, we measure and control the deterministic phase evolution throughout...... the splitting process. RF induced potentials are especially suited for integrated micro manipulation of neutral atoms on atom chips: designing appropriate wire patterns enables control over the created potentials to the (nanometer) precision of the fabrication process. Additionally, hight local RF amplitudes...

  20. Compact experimental apparatus for producing high-repetition-rate 87Rb Bose-Einstein condensation on an atom chip

    Science.gov (United States)

    Yu, Hoon; Kim, Seung Jin; Moon, Ye Lin; Kim, Jung Bog; Lee, Jin Seung

    2013-08-01

    We construct a compact experimental apparatus for producing high-repetition-rate ultra cold 87Rb atom based on an external atom chip. Initially, we produce an atomic flux from a 2D+ MOT (magneto-optical trap) in a nearly isolated 2D+ MOT chamber and improve the flux by adjusting the cooling beam detuning of the 2D+ MOT. The flux is trapped in the 3D MOT for 1.2 s and is further cooled by performing compressing the MOT for 20 ms and using polarization gradient cooling for 6.2 ms. After optical pumping into the 5 S F = 2 ( m F = 2) ground state, we transport atoms toward the chip surface by performing external Z coil trapping. At 1 mm below the chip surface, the external Z coil trap is completely switched to an atom chip trap by using a Z wire and a dimple wire on the chip with external bias fields. The transport and the switching take totally 520 ms. The number of atoms trapped on the atom chip is measured to be about 2 × 107. After the atoms has been compressed for 100 ms to increase trap frequencies, we perform RF evaporative cooling in the RF frequency range from 32 MHz to 6.82 MHz for 2.4 seconds. The final number of atoms in the atomic cloud after RF cooling is 1.2 × 105 atoms, and we are able to observe some Bose-Einstein condensation. The repetition rate for producing the condensation is 0.234 Hz. In this paper, we describe our experimental apparatus and processes.

  1. Efficient Direct Evaporative Cooling in an Atom Chip Magnetic Trap

    CERN Document Server

    Farkas, Daniel M; Du, Shengwang; Anderson, Dana

    2013-01-01

    We demonstrate direct evaporative cooling of $^{87}$Rb atoms confined in a dimple trap produced by an atom chip. By changing the two chip currents and two external bias fields, we show theoretically that the trap depth can be lowered in a controlled way with no change in the trap frequencies or the value of the field at the trap center. Experimentally, we maximized the decrease in trap depth by allowing some loosening of the trap. In total, we reduced the trap depth by a factor of 20. The geometric mean of the trap frequencies was reduced by less than a factor of 6. The measured phase space density in the final two stages increased by more than two orders of magnitude, and we estimate an increase of four orders of magnitude over the entire sequence. A subsequent rf evaporative sweep of only a few megahertz produced Bose-Einstein condensates. We also produce condensates in which raising the trap bottom pushes hotter atoms into an rf "knife" operating at a fixed frequency of 5\\,MHz.

  2. Cold atoms in microscopic traps from wires to chips

    CERN Document Server

    Cassettari, D

    2000-01-01

    Ioffe-Pritchard trap. In the latter we have achieved the trapping parameters required in the experiments with Bose-Einstein condensates with much reduced power consumption. In a second time we have replaced the free standing wires with an atom chip, which we have used to compress the atomic cloud in potentials with trap frequencies above 100 kHz and ground state sizes below 100 nm. Such potentials are especially interesting for quantum information proposals of performing quantum gate operations with controlled collisions between trapped atoms. Finally, by combining two wire guides we have experimentally realized an innovative kind of beam splitter for guided atoms. We have investigated the splitting potential generated by a Y-shaped wire which has one input, i.e. the central arm of the Y, and two outputs corresponding to the left and right arms of the Y. By tuning the current ratio in the two outputs we have observed atoms switching from left to right as well as symmetric splitting. This and other similar des...

  3. Two-dimensional array of microtraps with atomic shift register on a chip

    NARCIS (Netherlands)

    Whitlock, S.; Gerritsma, R.; Fernholz, T.; Spreeuw, R.J.C.

    2009-01-01

    Arrays of trapped atoms are the ideal starting points for developing registers comprising large numbers of physical qubits for storing and processing quantum information. One very promising approach involves neutral atom traps produced on microfabricated devices known as atom chips, as almost

  4. Wave Atom Based Watermarking

    OpenAIRE

    Bukhari, Ijaz; Nuhman-ul-Haq; Hyat, Khizar

    2013-01-01

    Watermarking helps in ensuring originality, ownership and copyrights of a digital image. This paper aims at embedding a Watermark in an image using Wave Atom Transform. Preference of Wave Atoms on other transformations has been due to its sparser expansion, adaptability to the direction of local pattern, and sharp frequency localization. In this scheme, we had tried to spread the watermark in an image so that the information at one place is very small and undetectable. In order to extract the...

  5. Matter-wave interferometry in a double well on an atom chip

    DEFF Research Database (Denmark)

    Schumm, Thorsten; Hofferberth, S.; Andersson, L. M.

    2005-01-01

    that can manipulate matter waves at the same time as preserving their coherence and phase. Here, we present an integrated interferometer based on a simple, coherent matter-wave beam splitter constructed on an atom chip. Through the use of radio-frequency-induced adiabatic double-well potentials, we...... condensate, we measure the deterministic phase evolution throughout the splitting process.We show that we can control the relative phase between the two fully separated samples and that our beam splitter is phase-preserving....

  6. Atomic structure of machined semiconducting chips: An x-ray absorption spectroscopy study

    Energy Technology Data Exchange (ETDEWEB)

    Paesler, M.; Sayers, D.

    1988-12-01

    X-ray absorption spectroscopy (XAS) has been used to examine the atomic structure of chips of germanium that were produced by single point diamond machining. It is demonstrated that although the local (nearest neighbor) atomic structure is experimentally quite similar to that of single crystal specimens information from more distant atoms indicates the presence of considerable stress. An outline of the technique is given and the strength of XAS in studying the machining process is demonstrated.

  7. Fifteen years of cold matter on the atom chip: promise, realizations, and prospects

    Science.gov (United States)

    Keil, Mark; Amit, Omer; Zhou, Shuyu; Groswasser, David; Japha, Yonathan; Folman, Ron

    2016-01-01

    Here we review the field of atom chips in the context of Bose–Einstein Condensates (BEC) as well as cold matter in general. Twenty years after the first realization of the BEC and 15 years after the realization of the atom chip, the latter has been found to enable extraordinary feats: from producing BECs at a rate of several per second, through the realization of matter-wave interferometry, and all the way to novel probing of surfaces and new forces. In addition, technological applications are also being intensively pursued. This review will describe these developments and more, including new ideas which have not yet been realized. PMID:27499585

  8. Atomic layer deposited TiO{sub 2} for implantable brain-chip interfacing devices

    Energy Technology Data Exchange (ETDEWEB)

    Cianci, E., E-mail: elena.cianci@mdm.imm.cnr.it [Laboratorio MDM, IMM-CNR, 20864 Agrate Brianza (MB) (Italy); Lattanzio, S. [Istituto di Fisiologia, Dipartimento di Anatomia Umana e Fisiologia, Universita di Padova, 35131 Padova (Italy); Dipartimento di Ingegneria dell' Informazione, Universita di Padova, 35131 Padova (Italy); Seguini, G. [Laboratorio MDM, IMM-CNR, 20864 Agrate Brianza (Italy); Vassanelli, S. [Istituto di Fisiologia, Dipartimento di Anatomia Umana e Fisiologia, Universita di Padova, 35131 Padova (Italy); Fanciulli, M. [Laboratorio MDM, IMM-CNR, 20864 Agrate Brianza (Italy); Dipartimento di Scienza dei Materiali, Universita degli Studi di Milano-Bicocca, 20126 Milano (Italy)

    2012-05-01

    In this paper we investigated atomic layer deposition (ALD) TiO{sub 2} thin films deposited on implantable neuro-chips based on electrolyte-oxide-semiconductor (EOS) junctions, implementing both efficient capacitive neuron-silicon coupling and biocompatibility for long-term implantable functionality. The ALD process was performed at 295 Degree-Sign C using titanium tetraisopropoxide and ozone as precursors on needle-shaped silicon substrates. Engineering of the capacitance of the EOS junctions introducing a thin Al{sub 2}O{sub 3} buffer layer between TiO{sub 2} and silicon resulted in a further increase of the specific capacitance. Biocompatibility for long-term implantable neuroprosthetic systems was checked upon in-vitro treatment.

  9. Magnetic-film atom chip with 10 μm period lattices of microtraps for quantum information science with Rydberg atoms

    Energy Technology Data Exchange (ETDEWEB)

    Leung, V. Y. F. [Van der Waals-Zeeman Institute, University of Amsterdam, Science Park 904, PO Box 94485, 1090 GL Amsterdam (Netherlands); Complex Photonic Systems (COPS), MESA Institute for Nanotechnology, University of Twente, PO Box 217, 7500 AE Enschede (Netherlands); Pijn, D. R. M.; Schlatter, H.; Torralbo-Campo, L.; La Rooij, A. L.; Mulder, G. B.; Naber, J.; Soudijn, M. L.; Tauschinsky, A.; Spreeuw, R. J. C., E-mail: r.j.c.spreeuw@uva.nl [Van der Waals-Zeeman Institute, University of Amsterdam, Science Park 904, PO Box 94485, 1090 GL Amsterdam (Netherlands); Abarbanel, C.; Hadad, B.; Golan, E. [Ilse Katz Institute for Nanoscale Science and Technology, Ben-Gurion University of the Negev, Be' er Sheva 84105 (Israel); Folman, R. [Department of Physics and Ilse Katz Institute for Nanoscale Science and Technology, Ben-Gurion University of the Negev, Be' er Sheva 84105 (Israel)

    2014-05-15

    We describe the fabrication and construction of a setup for creating lattices of magnetic microtraps for ultracold atoms on an atom chip. The lattice is defined by lithographic patterning of a permanent magnetic film. Patterned magnetic-film atom chips enable a large variety of trapping geometries over a wide range of length scales. We demonstrate an atom chip with a lattice constant of 10 μm, suitable for experiments in quantum information science employing the interaction between atoms in highly excited Rydberg energy levels. The active trapping region contains lattice regions with square and hexagonal symmetry, with the two regions joined at an interface. A structure of macroscopic wires, cutout of a silver foil, was mounted under the atom chip in order to load ultracold {sup 87}Rb atoms into the microtraps. We demonstrate loading of atoms into the square and hexagonal lattice sections simultaneously and show resolved imaging of individual lattice sites. Magnetic-film lattices on atom chips provide a versatile platform for experiments with ultracold atoms, in particular for quantum information science and quantum simulation.

  10. Magnetic-film atom chip with 10 μm period lattices of microtraps for quantum information science with Rydberg atoms.

    Science.gov (United States)

    Leung, V Y F; Pijn, D R M; Schlatter, H; Torralbo-Campo, L; La Rooij, A L; Mulder, G B; Naber, J; Soudijn, M L; Tauschinsky, A; Abarbanel, C; Hadad, B; Golan, E; Folman, R; Spreeuw, R J C

    2014-05-01

    We describe the fabrication and construction of a setup for creating lattices of magnetic microtraps for ultracold atoms on an atom chip. The lattice is defined by lithographic patterning of a permanent magnetic film. Patterned magnetic-film atom chips enable a large variety of trapping geometries over a wide range of length scales. We demonstrate an atom chip with a lattice constant of 10 μm, suitable for experiments in quantum information science employing the interaction between atoms in highly excited Rydberg energy levels. The active trapping region contains lattice regions with square and hexagonal symmetry, with the two regions joined at an interface. A structure of macroscopic wires, cutout of a silver foil, was mounted under the atom chip in order to load ultracold (87)Rb atoms into the microtraps. We demonstrate loading of atoms into the square and hexagonal lattice sections simultaneously and show resolved imaging of individual lattice sites. Magnetic-film lattices on atom chips provide a versatile platform for experiments with ultracold atoms, in particular for quantum information science and quantum simulation.

  11. Microfluidic chip based microfiber/nanofiber sensors

    Science.gov (United States)

    Zhang, Lei; Tong, Limin

    2017-04-01

    We demonstrate three microfluidic chip based microfiber/nanofiber sensors for ultra-sensitive absorption, fluorescence, and femtoliter-scale sensing, respectively. The sensors shown here may open up new opportunities for ultra-sensitive biosensing and single molecule analysis.

  12. Chip-Scale Magnetic Source of Cold Atoms

    Science.gov (United States)

    2013-06-01

    miniaturization . Prior experiments have shown the creation of a Bose-Einstein Condensate on the surface of a microchip [3]. Using small etched wires on the chip to... miniaturization of the device implies that the slowing magnetic field move at comparable speeds to the beam. To do that, precision control of the high currents...together two CONFLAT, knife -edge seals with a copper gasket in between. However, when the final connection was to be made, from the glass transition

  13. High-Resolution Imaging and Optical Control of Bose-Einstein Condensates in an Atom Chip Magnetic Trap

    CERN Document Server

    Salim, Evan A; Pfeiffer, Jonathan B; Anderson, Dana Z

    2012-01-01

    A high-resolution projection and imaging system for ultracold atoms is implemented using a compound silicon and glass atom chip. The atom chip is metalized to enable magnetic trapping while glass regions enable high numerical aperture optical access to atoms residing in the magnetic trap about 100 microns below the chip surface. The atom chip serves as a wall of the vacuum system, which enables the use of commercial microscope components for projection and imaging. Holographically generated light patterns are used to optically slice a cigar-shaped magnetic trap into separate regions; this has been used to simultaneously generate up to four Bose-condensates. Using fluorescence techniques we have demonstrated in-trap imaging resolution down to 2.5 microns

  14. High-Flux Ultracold-Atom Chip Interferometers Project

    Data.gov (United States)

    National Aeronautics and Space Administration — ColdQuanta's ultimate objective is to produce a compact, turnkey, ultracold-atom system specifically designed for performing interferometry with Bose-Einstein...

  15. Chip-based quantum key distribution.

    Science.gov (United States)

    Sibson, P; Erven, C; Godfrey, M; Miki, S; Yamashita, T; Fujiwara, M; Sasaki, M; Terai, H; Tanner, M G; Natarajan, C M; Hadfield, R H; O'Brien, J L; Thompson, M G

    2017-02-09

    Improvement in secure transmission of information is an urgent need for governments, corporations and individuals. Quantum key distribution (QKD) promises security based on the laws of physics and has rapidly grown from proof-of-concept to robust demonstrations and deployment of commercial systems. Despite these advances, QKD has not been widely adopted, and large-scale deployment will likely require chip-based devices for improved performance, miniaturization and enhanced functionality. Here we report low error rate, GHz clocked QKD operation of an indium phosphide transmitter chip and a silicon oxynitride receiver chip-monolithically integrated devices using components and manufacturing processes from the telecommunications industry. We use the reconfigurability of these devices to demonstrate three prominent QKD protocols-BB84, Coherent One Way and Differential Phase Shift-with performance comparable to state-of-the-art. These devices, when combined with integrated single photon detectors, pave the way for successfully integrating QKD into future telecommunications networks.

  16. Chip based electroanalytical systems for cell analysis

    DEFF Research Database (Denmark)

    Spegel, C.; Heiskanen, A.; Skjolding, L.H.D.

    2008-01-01

    ' measurements of processes related to living cells, i.e., systems without lysing the cells. The focus is on chip based amperometric and impedimetric cell analysis systems where measurements utilizing solely carbon fiber microelectrodes (CFME) and other nonchip electrode formats, such as CFME for exocytosis......This review with 239 references has as its aim to give the reader an introduction to the kinds of methods used for developing microchip based electrode systems as well as to cover the existing literature on electroanalytical systems where microchips play a crucial role for 'nondestructive...... studies and scanning electrochemical microscopy (SECM) studies of living cells have been omitted. Included is also a discussion about some future and emerging nano tools and considerations that might have an impact on the future of "nondestructive" chip based electroanalysis of living cells....

  17. Chip-based quantum key distribution

    Science.gov (United States)

    Sibson, P.; Erven, C.; Godfrey, M.; Miki, S.; Yamashita, T.; Fujiwara, M.; Sasaki, M.; Terai, H.; Tanner, M. G.; Natarajan, C. M.; Hadfield, R. H.; O'Brien, J. L.; Thompson, M. G.

    2017-01-01

    Improvement in secure transmission of information is an urgent need for governments, corporations and individuals. Quantum key distribution (QKD) promises security based on the laws of physics and has rapidly grown from proof-of-concept to robust demonstrations and deployment of commercial systems. Despite these advances, QKD has not been widely adopted, and large-scale deployment will likely require chip-based devices for improved performance, miniaturization and enhanced functionality. Here we report low error rate, GHz clocked QKD operation of an indium phosphide transmitter chip and a silicon oxynitride receiver chip—monolithically integrated devices using components and manufacturing processes from the telecommunications industry. We use the reconfigurability of these devices to demonstrate three prominent QKD protocols—BB84, Coherent One Way and Differential Phase Shift—with performance comparable to state-of-the-art. These devices, when combined with integrated single photon detectors, pave the way for successfully integrating QKD into future telecommunications networks. PMID:28181489

  18. [Study of LED chip spectrum acquisition system based on CPLD].

    Science.gov (United States)

    Shi, Wei; Zhou, Da-Bing; Dong, Zhan-Min; Sun, Hong-San; Xi, An-Min

    2010-03-01

    The light emitting diode (LED) chip spectrum inspection is a key technology in LED chip scaled manufacturing. According to the principle of spectrum inspection and aiming at the demand of applications of LED chip spectrum inspection, the present paper studies the spectrum acquisition system based on complex programmable logic device (CPLD). The CPLD, the main chip, provides the working timing signal to the linear charge coupled device (CCD) and controls the signal modulating, conversion and storage, and transmission of sampling rate and data in transfer module. The system adopts raster monochromator as prismatic parts of apparatus and linear CCD as photoelectricity conversion parts to inspect the opposite spectrum energy distributing curve, and mean while calculate the spectrum parameter of LED chip photics characteristic. Based on the CPLD , the LED chip spectrum acquisition system with the virtues of simplicity and celerity satisfies the precision request of LED chip spectrum inspection.

  19. Heteronanojunctions with atomic size control using a lab-on-chip electrochemical approach with integrated microfluidics

    Energy Technology Data Exchange (ETDEWEB)

    Lunca Popa, P; Dalmas, G; Faramarzi, V; Dayen, J F; Majjad, H; Doudin, B [Institut de Physique et Chimie des Materiaux de Strasbourg, UMR 7504 CNRS-UdS, 23 rue du Loess, BP 43, 67034 Strasbourg (France); Kemp, N T, E-mail: petpo@ifm.liu.se, E-mail: bernard.doudin@ipcms.u-strasbg.fr [Department of Physics, University of Hull, Cottingham Road, Kingston-upon-Hull, HU6 7RX (United Kingdom)

    2011-05-27

    A versatile tool for electrochemical fabrication of heteronanojunctions with nanocontacts made of a few atoms and nanogaps of molecular spacing is presented. By integrating microfluidic circuitry in a lab-on-chip approach, we keep control of the electrochemical environment in the vicinity of the nanojunction and add new versatility for exchanging and controlling the junction's medium. Nanocontacts made of various materials by successive local controlled depositions are demonstrated, with electrical properties revealing sizes reaching a few atoms only. Investigations on benchmark molecular electronics material, trapped between electrodes, reveal the possibility to create nanogaps of size matching those of molecules. We illustrate the interest of a microfluidic approach by showing that exposure of a fabricated molecular junction to controlled high solvent flows can be used as a reliability criterion for the presence of molecular entities in a gap.

  20. High resistivity iron-based, thermally stable magnetic material for on-chip integrated inductors

    Science.gov (United States)

    Deligianni, Hariklia; Gallagher, William J.; Mason, Maurice; O'Sullivan, Eugene J.; Romankiw, Lubomyr T.; Wang, Naigang

    2017-03-07

    An on-chip magnetic structure includes a palladium activated seed layer and a substantially amorphous magnetic material disposed onto the palladium activated seed layer. The substantially amorphous magnetic material includes nickel in a range from about 50 to about 80 atomic % (at. %) based on the total number of atoms of the magnetic material, iron in a range from about 10 to about 50 at. % based on the total number of atoms of the magnetic material, and phosphorous in a range from about 0.1 to about 30 at. % based on the total number of atoms of the magnetic material. The magnetic material can include boron in a range from about 0.1 to about 5 at. % based on the total number of atoms of the magnetic material.

  1. High resistivity iron-based, thermally stable magnetic material for on-chip integrated inductors

    Energy Technology Data Exchange (ETDEWEB)

    Deligianni, Hariklia; Gallagher, William J.; Mason, Maurice; O' Sullivan, Eugene J.; Romankiw, Lubomyr T.; Wang, Naigang

    2017-10-17

    An on-chip magnetic structure includes a palladium activated seed layer and a substantially amorphous magnetic material disposed onto the palladium activated seed layer. The substantially amorphous magnetic material includes nickel in a range from about 50 to about 80 atomic % (at. %) based on the total number of atoms of the magnetic material, iron in a range from about 10 to about 50 at. % based on the total number of atoms of the magnetic material, and phosphorous in a range from about 0.1 to about 30 at. % based on the total number of atoms of the magnetic material. The magnetic material can include boron in a range from about 0.1 to about 5 at. % based on the total number of atoms of the magnetic material.

  2. Chip-based microtrap arrays for cold polar molecules

    Science.gov (United States)

    Hou, Shunyong; Wei, Bin; Deng, Lianzhong; Yin, Jianping

    2017-12-01

    Compared to the atomic chip, which has been a powerful platform to perform an astonishing range of applications from rapid Bose-Einstein condensate (BEC) production to the atomic clock, the molecular chip is only in its infant stages. Recently a one-dimensional electric lattice was demonstrated to trap polar molecules on a chip. This excellent work opens up the way to building a molecular chip laboratory. Here we propose a two-dimensional (2D) electric lattice on a chip with concise and robust structure, which is formed by arrays of squared gold wires. Arrays of microtraps that originate in the microsize electrodes offer a steep gradient and thus allow for confining both light and heavy polar molecules. Theoretical analysis and numerical calculations are performed using two types of sample molecules, N D3 and SrF, to justify the possibility of our proposal. The height of the minima of the potential wells is about 10 μm above the surface of the chip and can be easily adjusted in a wide range by changing the voltages applied on the electrodes. These microtraps offer intriguing perspectives for investigating cold molecules in periodic potentials, such as quantum computing science, low-dimensional physics, and some other possible applications amenable to magnetic or optical lattice. The 2D adjustable electric lattice is expected to act as a building block for a future gas-phase molecular chip laboratory.

  3. Note: A silicon-on-insulator microelectromechanical systems probe scanner for on-chip atomic force microscopy

    Energy Technology Data Exchange (ETDEWEB)

    Fowler, Anthony G.; Maroufi, Mohammad; Moheimani, S. O. Reza, E-mail: Reza.Moheimani@newcastle.edu.au [School of Electrical Engineering and Computer Science, University of Newcastle, Callaghan, NSW 2308 (Australia)

    2015-04-15

    A new microelectromechanical systems-based 2-degree-of-freedom (DoF) scanner with an integrated cantilever for on-chip atomic force microscopy (AFM) is presented. The silicon cantilever features a layer of piezoelectric material to facilitate its use for tapping mode AFM and enable simultaneous deflection sensing. Electrostatic actuators and electrothermal sensors are used to accurately position the cantilever within the x-y plane. Experimental testing shows that the cantilever is able to be scanned over a 10 μm × 10 μm window and that the cantilever achieves a peak-to-peak deflection greater than 400 nm when excited at its resonance frequency of approximately 62 kHz.

  4. Chip-based droplet sorting

    Science.gov (United States)

    Beer, Neil Reginald; Lee, Abraham; Hatch, Andrew

    2017-11-21

    A non-contact system for sorting monodisperse water-in-oil emulsion droplets in a microfluidic device based on the droplet's contents and their interaction with an applied electromagnetic field or by identification and sorting.

  5. Chip-based droplet sorting

    Energy Technology Data Exchange (ETDEWEB)

    Beer, Neil Reginald; Lee, Abraham; Hatch, Andrew

    2017-11-21

    A non-contact system for sorting monodisperse water-in-oil emulsion droplets in a microfluidic device based on the droplet's contents and their interaction with an applied electromagnetic field or by identification and sorting.

  6. Chip-based droplet sorting

    Science.gov (United States)

    Beer, Neil Reginald; Lee, Abraham; Hatch, Andrew

    2014-07-01

    A non-contact system for sorting monodisperse water-in-oil emulsion droplets in a microfluidic device based on the droplet's contents and their interaction with an applied electromagnetic field or by identification and sorting.

  7. Hard and soft acids and bases: atoms and atomic ions.

    Science.gov (United States)

    Reed, James L

    2008-07-07

    The structural origin of hard-soft behavior in atomic acids and bases has been explored using a simple orbital model. The Pearson principle of hard and soft acids and bases has been taken to be the defining statement about hard-soft behavior and as a definition of chemical hardness. There are a number of conditions that are imposed on any candidate structure and associated property by the Pearson principle, which have been exploited. The Pearson principle itself has been used to generate a thermodynamically based scale of relative hardness and softness for acids and bases (operational chemical hardness), and a modified Slater model has been used to discern the electronic origin of hard-soft behavior. Whereas chemical hardness is a chemical property of an acid or base and the operational chemical hardness is an experimental measure of it, the absolute hardness is a physical property of an atom or molecule. A critical examination of chemical hardness, which has been based on a more rigorous application of the Pearson principle and the availability of quantitative measures of chemical hardness, suggests that the origin of hard-soft behavior for both acids and bases resides in the relaxation of the electrons not undergoing transfer during the acid-base interaction. Furthermore, the results suggest that the absolute hardness should not be taken as synonymous with chemical hardness but that the relationship is somewhat more complex. Finally, this work provides additional groundwork for a better understanding of chemical hardness that will inform the understanding of hardness in molecules.

  8. Three-dimensional magnetic trap lattice on an atom chip with an optically induced fictitious magnetic field

    Science.gov (United States)

    Yan, Hui

    2010-05-01

    A robust type of three-dimensional magnetic trap lattice on an atom chip combining optically induced fictitious magnetic field with microcurrent-carrying wires is proposed. Compared to the regular optical lattice, the individual trap in this three-dimensional magnetic trap lattice can be easily addressed and manipulated.

  9. Droplet Microfluidics for Chip-Based Diagnostics

    Science.gov (United States)

    Kaler, Karan V. I. S.; Prakash, Ravi

    2014-01-01

    Droplet microfluidics (DMF) is a fluidic handling technology that enables precision control over dispensing and subsequent manipulation of droplets in the volume range of microliters to picoliters, on a micro-fabricated device. There are several different droplet actuation methods, all of which can generate external stimuli, to either actively or passively control the shape and positioning of fluidic droplets over patterned substrates. In this review article, we focus on the operation and utility of electro-actuation-based DMF devices, which utilize one or more micro-/nano-patterned substrates to facilitate electric field-based handling of chemical and/or biological samples. The underlying theory of DMF actuations, device fabrication methods and integration of optical and opto-electronic detectors is discussed in this review. Example applications of such electro-actuation-based DMF devices have also been included, illustrating the various actuation methods and their utility in conducting chip-based laboratory and clinical diagnostic assays. PMID:25490590

  10. Droplet Microfluidics for Chip-Based Diagnostics

    Directory of Open Access Journals (Sweden)

    Karan V. I. S. Kaler

    2014-12-01

    Full Text Available Droplet microfluidics (DMF is a fluidic handling technology that enables precision control over dispensing and subsequent manipulation of droplets in the volume range of microliters to picoliters, on a micro-fabricated device. There are several different droplet actuation methods, all of which can generate external stimuli, to either actively or passively control the shape and positioning of fluidic droplets over patterned substrates. In this review article, we focus on the operation and utility of electro-actuation-based DMF devices, which utilize one or more micro-/nano-patterned substrates to facilitate electric field-based handling of chemical and/or biological samples. The underlying theory of DMF actuations, device fabrication methods and integration of optical and opto-electronic detectors is discussed in this review. Example applications of such electro-actuation-based DMF devices have also been included, illustrating the various actuation methods and their utility in conducting chip-based laboratory and clinical diagnostic assays.

  11. Chip-based electrochromatography coupled to ESI-MS detection.

    Science.gov (United States)

    Dietze, Claudia; Hackl, Claudia; Gerhardt, Renata; Seim, Stephan; Belder, Detlev

    2016-05-01

    In this study, we present the coupling of chip-based electrochromatography to MS using a glass chip with a monolithically integrated nanoelectrospray emitter. As separation column, an acrylate-based porous polymer monolith is implemented into the glass chip by photopolymerization. For the establishment and development of this method, we used a test mixture detectable with both fluorescence and ESI-MS. After successful evaluation of the approach with the test solutes, it was applied exemplarily for drug analysis such as high-speed separations of benzodiazepines in pharmaceuticals. © 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  12. Graphene oxide-based SPR biosensor chip for immunoassay applications

    National Research Council Canada - National Science Library

    Chiu, Nan-Fu; Huang, Teng-Yi; Lai, Hsin-Chih; Liu, Kou-Chen

    2014-01-01

    ...)-based surface plasmon resonance (SPR) chips. This sensing film, which is formed by chemically modifying a GOS surface, has covalent bonds that strongly interact with the bovine serum albumin (BSA...

  13. Progress in ion torrent semiconductor chip based sequencing.

    Science.gov (United States)

    Merriman, Barry; Rothberg, Jonathan M

    2012-12-01

    In order for next-generation sequencing to become widely used as a diagnostic in the healthcare industry, sequencing instrumentation will need to be mass produced with a high degree of quality and economy. One way to achieve this is to recast DNA sequencing in a format that fully leverages the manufacturing base created for computer chips, complementary metal-oxide semiconductor chip fabrication, which is the current pinnacle of large scale, high quality, low-cost manufacturing of high technology. To achieve this, ideally the entire sensory apparatus of the sequencer would be embodied in a standard semiconductor chip, manufactured in the same fab facilities used for logic and memory chips. Recently, such a sequencing chip, and the associated sequencing platform, has been developed and commercialized by Ion Torrent, a division of Life Technologies, Inc. Here we provide an overview of this semiconductor chip based sequencing technology, and summarize the progress made since its commercial introduction. We described in detail the progress in chip scaling, sequencing throughput, read length, and accuracy. We also summarize the enhancements in the associated platform, including sample preparation, data processing, and engagement of the broader development community through open source and crowdsourcing initiatives. © 2012 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  14. A Compact Microchip-Based Atomic Clock Based on Ultracold Trapped Rb Atoms

    CERN Document Server

    Farkas, Daniel M; Anderson, Dana Z

    2009-01-01

    We propose a compact atomic clock based on ultracold Rb atoms that are magnetically trapped near the surface of an atom microchip. An interrogation scheme that combines electromagnetically-induced transparency (EIT) with Ramsey's method of separated oscillatory fields can achieve atomic shot-noise level performance of 10^{-13}/sqrt(tau) for 10^6 atoms. The EIT signal can be detected with a heterodyne technique that provides noiseless gain; with this technique the optical phase shift of a 100 pW probe beam can be detected at the photon shot-noise level. Numerical calculations of the density matrix equations are used to identify realistic operating parameters at which AC Stark shifts are eliminated. By considering fluctuations in these parameters, we estimate that AC Stark shifts can be canceled to a level better than 2*10^{-14}. An overview of the apparatus is presented with estimates of duty cycle and power consumption.

  15. Nanofabrication for On-Chip Optical Levitation, Atom-Trapping, and Superconducting Quantum Circuits

    Science.gov (United States)

    Norte, Richard Alexander

    a final value of Qm = 5.8(1.1) x 105, representing more than an order of magnitude improvement over the conventional limits of SiO2 for a pendulum geometry. Our technique may enable new opportunities for mechanical sensing and facilitate observations of quantum behavior in this class of mechanical systems. We then give a detailed overview of the techniques used to produce high-aspect-ratio nanostructures with applications in a wide range of quantum optics experiments. The ability to fabricate such nanodevices with high precision opens the door to a vast array of experiments which integrate macroscopic optical setups with lithographically engineered nanodevices. Coupled with atom-trapping experiments in the Kimble Lab, we use these techniques to realize a new waveguide chip designed to address ultra-cold atoms along lithographically patterned nanobeams which have large atom-photon coupling and near 4pi Steradian optical access for cooling and trapping atoms. We describe a fully integrated and scalable design where cold atoms are spatially overlapped with the nanostring cavities in order to observe a resonant optical depth of d0 ≈ 0.15. The nanodevice illuminates new possibilities for integrating atoms into photonic circuits and engineering quantum states of atoms and light on a microscopic scale. We then describe our work with superconducting microwave resonators coupled to a phononic cavity towards the goal of building an integrated device for quantum-limited microwave-to-optical wavelength conversion. We give an overview of our characterizations of several types of substrates for fabricating a low-loss high-frequency electromechanical system. We describe our electromechanical system fabricated on a SiN membrane which consists of a 12 GHz superconducting LC resonator coupled capacitively to the high frequency localized modes of a phononic nanobeam. Using our suspended membrane geometry we isolate our system from substrates with significant loss tangents

  16. Development of gold based solder candidates for flip chip assembly

    DEFF Research Database (Denmark)

    Chidambaram, Vivek; Hald, John; Hattel, Jesper Henri

    2009-01-01

    based on its notorious legacy as a major health hazard across the spectrum of human generations and cultures. Flip chip assembly is also now increasingly being used for the high-performance (H-P) systems. These H-P systems perform mission-critical operations and are expected to experience virtually......Flip chip technology is now rapidly replacing the traditional wire bonding interconnection technology in the first level packaging applications due to the miniaturization drive in the microelectronics industry. Flip chip assembly currently involves the use of high lead containing solders...... for interconnecting the chip to a carrier in certain applications due to the unique properties of lead. Despite of all the beneficial attributes of lead, its potential environmental impact when the products are discarded to land fills has resulted in various legislatives to eliminate lead from the electronic products...

  17. Nanocrystalline silicon-based oligonucleotide chips.

    Science.gov (United States)

    Zhu, Z Q; Zhu, B; Zhang, J; Zhu, J Z; Fan, C H

    2007-04-15

    A novel oligonucleotide array sensor has been developed with nanocrystalline Si (ncSi) substrates. The ncSi was prepared by electrochemical etching technique. Our study indicated that both the binding capacity and the hybridization efficiency are dependent upon the particle size of ncSi. In contrary, the chips developed with Si substrates exhibit the lower binding capacity and hybridization efficiency. The improved performances of the sensor chips are attributed to the large specific surface area of ncSi compared to the existing conventional techniques. The sensor chips with the ncSi substrate of 13 nm-sized particle can be regenerated and reused for at least 12 times. The oligonucleotide array sensor also shows high stability, which can bear relatively the stringent conditions (e.g. 80 degrees C, 75% of relative humidity and 3.6 klx of irradiation).

  18. System-on-chip based Doppler radar occupancy sensor.

    Science.gov (United States)

    Yavari, Ehsan; Song, Chenyan; Lubecke, Victor; Boric-Lubecke, Olga

    2011-01-01

    System-on-Chip (SoC) based Doppler radar occupancy sensor is developed through non contact detection of respiratory signals. The radio was developed using off the shelf low power RF CC2530 SoC chip by Texas Instruments. In order to save power, the transmitter sends signal intermittently at 2.405 GHz. Reflected pulses are demodulated, and the baseband signals are processed to recover periodic motion. The system was tested both with mechanical target and a human subject. In both cases Doppler radar detected periodic motion closely matched the actual motion, and it has been shown that an SoC based system can be used for subject detection.

  19. Novel definition files for human GeneChips based on GeneAnnot

    National Research Council Canada - National Science Library

    Ferrari, Francesco; Bortoluzzi, Stefania; Coppe, Alessandro; Sirota, Alexandra; Safran, Marilyn; Shmoish, Michael; Ferrari, Sergio; Lancet, Doron; Danieli, Gian Antonio; Bicciato, Silvio

    2007-01-01

    .... We developed a novel set of custom Chip Definition Files (CDF) and the corresponding Bioconductor libraries for Affymetrix human GeneChips, based on the information contained in the GeneAnnot database...

  20. Note: A microfluidic freezer based on evaporative cooling of atomized aqueous microdroplets.

    Science.gov (United States)

    Song, Jin; Chung, Minsub; Kim, Dohyun

    2015-01-01

    We report for the first time water-based evaporative cooling integrated into a microfluidic chip for temperature control and freezing of biological solution. We opt for water as a nontoxic, effective refrigerant. Aqueous solutions are atomized in our device and evaporation of microdroplets under vacuum removes heat effectively. We achieve rapid cooling (-5.1 °C/s) and a low freezing temperature (-14.1 °C). Using this approach, we demonstrate freezing of deionized water and protein solution. Our simple, yet effective cooling device may improve many microfluidic applications currently relying on external power-hungry instruments for cooling and freezing.

  1. Droplet-based micro oscillating-flow PCR chip

    Science.gov (United States)

    Wang, Wei; Li, Zhi-Xin; Luo, Rong; Lü, Shu-Hai; Xu, Ai-Dong; Yang, Yong-Jun

    2005-08-01

    Polymerase chain reactions (PCR), thermally activated chemical reactions which are widely used for nucleic acid amplification, have recently received much attention in microelectromechanical systems and micro total analysis systems because a wide variety of DNA/RNA molecules can be enriched by PCR for further analyses. In the present work, a droplet-based micro oscillating-flow PCR chip was designed and fabricated by the silicon microfabrication technique. Three different temperature zones, which were stable at denaturation, extension and annealing temperatures and isolated from each other by a thin-wall linkage, were integrated with a single, simple and straight microchannel to form the chip's basic functional structure. The PCR mixture was injected into the chip as a single droplet and flowed through the three temperature zones in the main microchannel in an oscillating manner to achieve the temperature maintenance and transitions. The chip's thermal performance was theoretically analyzed and numerically simulated. The results indicated that the time needed for the temperature of the droplet to change to the target value is less than 1 s, and the root mean square error of temperature is less than 0.2 °C. A droplet of 1 µl PCR mixture with standard HPV (Human Papilloma Virus)-DNA sample inside was amplified by the present chip and the results were analyzed by slab gel electrophoresis with separation of DNA markers in parallel. The electrophoresis results demonstrated that the micro oscillating-flow PCR chip successfully amplified the HPV-DNA, with a processing time of about 15 min which is significantly reduced compared to that for the conventional PCR instrument.

  2. Chip electrophoresis of gelatin-based nanoparticles.

    Science.gov (United States)

    Weiss, Victor U; Lehner, Angela; Grombe, Ringo; Marchetti-Deschmann, Martina; Allmaier, Günter

    2013-08-01

    Recently, biodegradable nanoparticles received increasing attention for pharmaceutical applications as well as applications in the food industry. With the current investigation we demonstrate chip electrophoresis of fluorescently (FL) labeled gelatin nanoparticles (gelatin NPs) on a commercially available instrument. FL labeling included a step for the removal of low molecular mass material (especially excess dye molecules). Nevertheless, for the investigated gelatin NP preparation two analyte peaks, one very homogeneous with an electrophoretic net mobility of μ = -24.6 ± 0.3 × 10(-9) m(2) /Vs at the peak apex (n = 17) and another more heterogeneous peak with μ between approximately -27.2 ± 0.2 × 10(-9) m(2) /Vs and -36.6 ± 0.2 × 10(-9) m(2) /Vs at the peak beginning and end point (n = 11, respectively) were recorded. Filtration allowed enrichment of particles in the size range of approximately 35 nm (pore size employed for concentration of gelatin NPs) to 200 nm (pore size employed during FL labeling). This corresponded to the very homogeneous peak linking it to gelatin NPs, whereas the more heterogeneous peak probably corresponds to gelatin not cross-linked to such a high degree (NP building blocks). Several further gelatin NP preparations were analyzed according to the same protocol yielding peaks with electrophoretic net mobilities between -23.3 ± 0.3 × 10(-9) m(2) /Vs and -28.9 ± 0.2 × 10(-9) m(2) /Vs at peak apexes (n = 15 and 6). Chip electrophoresis allows analyte separation in less than two minutes (including electrophoretic sample injection). Together with the high sensitivity of the FL detection - the LOD as derived for the first main peak of the applied dye from the threefold standard deviation of the background noise values 80 pM for determined separation conditions - this leads to a very promising high throughput separation technique especially for the analysis of bionanoparticles. For gelatin NP preparations, chip electrophoresis

  3. Lab-on-a-Chip Based Protein Crystallization

    Science.gov (United States)

    vanderWoerd, Mark J.; Brasseur, Michael M.; Spearing, Scott F.; Whitaker, Ann F. (Technical Monitor)

    2001-01-01

    We are developing a novel technique with which we will grow protein crystals in very small volumes, utilizing chip-based, microfluidic ("LabChip") technology. This development, which is a collaborative effort between NASA's Marshall Space Flight Center and Caliper Technologies Corporation, promises a breakthrough in the field of protein crystal growth. Our initial results obtained from two model proteins, Lysozyme and Thaumatin, show that it is feasible to dispense and adequately mix protein and precipitant solutions on a nano-liter scale. The mixtures have shown crystal growth in volumes in the range of 10 nanoliters to 5 microliters. In addition, large diffraction quality crystals were obtained by this method. X-ray data from these crystals were shown to be of excellent quality. Our future efforts will include the further development of protein crystal growth with LabChip(trademark) technology for more complex systems. We will initially address the batch growth method, followed by the vapor diffusion method and the liquid-liquid diffusion method. The culmination of these chip developments is to lead to an on orbit protein crystallization facility on the International Space Station. Structural biologists will be invited to utilize the on orbit Iterative Biological Crystallization facility to grow high quality macromolecular crystals in microgravity.

  4. Fabrication LSPR sensor chip of Ag NPs and their biosensor application based on interparticle coupling

    Science.gov (United States)

    Ghodselahi, T.; Neishaboorynejad, T.; Arsalani, S.

    2015-07-01

    We introduce a simple method to synthesize localized surface plasmon resonance (LSPR) sensor chip of Ag NPs on the hydrogenated amorphous carbon by co-deposition of RF-Sputtering and RF-PECVD. The X-ray photoelectron spectroscopy revealed the content of Ag and C atoms. X-ray diffraction profile and atomic force microscopy indicate that the Ag NPs have fcc crystal structure and spherical shape and by increasing deposition time, particle sizes do not vary and only Ag NPs aggregation occurs, resulting in LSPR wavelength shift. Firstly, by increasing Ag NPs content, in-plan interparticles coupling is dominant and causes redshift in LSPR. At the early stage of agglomeration, out-plane coupling occurs and in-plane coupling is reduced, resulting a blueshift in the LSPR. By further increasing of Ag NPs content, agglomeration is completed on the substrate and in-plan coupling rises, resulting significant redshift in the LSPR. Results were used to implement biosensor application of chips. Detection of DNA primer at fM concentration was achieved based on breaking interparticles coupling of Ag NPs. A significant wavelength shift sensitivity of 30 nm and a short response time of 30 min were obtained, where both of these are prerequisite for biosensor applications.

  5. Neural Cell Chip Based Electrochemical Detection of Nanotoxicity

    Directory of Open Access Journals (Sweden)

    Md. Abdul Kafi

    2015-07-01

    Full Text Available Development of a rapid, sensitive and cost-effective method for toxicity assessment of commonly used nanoparticles is urgently needed for the sustainable development of nanotechnology. A neural cell with high sensitivity and conductivity has become a potential candidate for a cell chip to investigate toxicity of environmental influences. A neural cell immobilized on a conductive surface has become a potential tool for the assessment of nanotoxicity based on electrochemical methods. The effective electrochemical monitoring largely depends on the adequate attachment of a neural cell on the chip surfaces. Recently, establishment of integrin receptor specific ligand molecules arginine-glycine-aspartic acid (RGD or its several modifications RGD-Multi Armed Peptide terminated with cysteine (RGD-MAP-C, C(RGD4 ensure farm attachment of neural cell on the electrode surfaces either in their two dimensional (dot or three dimensional (rod or pillar like nano-scale arrangement. A three dimensional RGD modified electrode surface has been proven to be more suitable for cell adhesion, proliferation, differentiation as well as electrochemical measurement. This review discusses fabrication as well as electrochemical measurements of neural cell chip with particular emphasis on their use for nanotoxicity assessments sequentially since inception to date. Successful monitoring of quantum dot (QD, graphene oxide (GO and cosmetic compound toxicity using the newly developed neural cell chip were discussed here as a case study. This review recommended that a neural cell chip established on a nanostructured ligand modified conductive surface can be a potential tool for the toxicity assessments of newly developed nanomaterials prior to their use on biology or biomedical technologies.

  6. An Ultraviolet-Visible (UV Photometry System Based on the PDMS-based Microfluidic Chip

    Directory of Open Access Journals (Sweden)

    Xiang Changhua

    2017-01-01

    Full Text Available In order to avoid a problem remains with the low accuracy and poor portability of the photometry system, the system based on the photometry method and microfluidic chip technology was built. As the characteristics of cheap, solid and good transmission, Polydimethylsiloxane (PDMS was chosen as the material of the designed chip in the paper. To the designed UV photometry system, the light-emitting diode with wavelength of 580m is chosen as the light source. The experimental result indicates that there is no significant deviation between the designed UV photometry system and the conventional immuneturbidimetric assay, the correlation coefficient is 0.95 obtained by adopting the linear regression analysis. The linearity of the designed UV photometry system based on the PDMS-based microfluidic chip has increased by 17.3% in comparison with the system based on the silicon-based microfluidic chip.

  7. Note: Guaranteed collocated multimode control of an atomic force microscope cantilever using on-chip piezoelectric actuation and sensing

    Science.gov (United States)

    Ruppert, Michael G.; Yong, Yuen K.

    2017-08-01

    The quality (Q) factor is an important parameter of the resonance of the microcantilever as it determines both imaging bandwidth and force sensitivity. The ability to control the Q factor of multiple modes is believed to be of great benefit for atomic force microscopy techniques involving multiple eigenmodes. In this paper, we propose a novel cantilever design employing multiple piezoelectric transducers which are used for separated actuation and sensing, leading to guaranteed collocation of the first eight eigenmodes up to 3 MHz. The design minimizes the feedthrough usually observed with these systems by incorporating a guard trace on the cantilever chip. As a result, a multimode Q controller is demonstrated to be able to modify the quality factor of the first two eigenmodes over up to four orders of magnitude without sacrificing robust stability.

  8. Embedded Processor Based Automatic Temperature Control of VLSI Chips

    Directory of Open Access Journals (Sweden)

    Narasimha Murthy Yayavaram

    2009-01-01

    Full Text Available This paper presents embedded processor based automatic temperature control of VLSI chips, using temperature sensor LM35 and ARM processor LPC2378. Due to the very high packing density, VLSI chips get heated very soon and if not cooled properly, the performance is very much affected. In the present work, the sensor which is kept very near proximity to the IC will sense the temperature and the speed of the fan arranged near to the IC is controlled based on the PWM signal generated by the ARM processor. A buzzer is also provided with the hardware, to indicate either the failure of the fan or overheating of the IC. The entire process is achieved by developing a suitable embedded C program.

  9. Demonstration of a Chip-based Nonlinear Optical Isolator

    CERN Document Server

    Hua, Shiyue; Jiang, Xiaoshun; Hua, Qian; Jiang, Liang; Xiao, Min

    2016-01-01

    Despite fundamentally challenging in integrated (nano)photonics, achieving chip-based light nonreciprocity becomes increasingly urgent in signal processing and optical communications. Because of material incompatibilities in conventional approaches based on Faraday effects, alternative solutions have resorted to nonlinear processes to obtain one-way transmission. However, revealed dynamic reciprocity in a recent theoretical analysis has pinned down the functionalities of these nonlinear isolators. To overcome this dynamic reciprocity, we here report the first demonstration of a nonlinear optical isolator on a silicon chip enforced by phase-matched parametric amplification. Using a high-Q microtoroid resonator, we realize highly nonreciprocal transport at the 1,550 nm wavelength when waves are simultaneously launched in both forward and backward directions. Our design, compatible with current CMOS technique, yields convincing isolation performance with sufficiently low insertion loss for a wide range of input ...

  10. Spreadsheet-Based Program for Simulating Atomic Emission Spectra

    Science.gov (United States)

    Flannigan, David J.

    2014-01-01

    A simple Excel spreadsheet-based program for simulating atomic emission spectra from the properties of neutral atoms (e.g., energies and statistical weights of the electronic states, electronic partition functions, transition probabilities, etc.) is described. The contents of the spreadsheet (i.e., input parameters, formulas for calculating…

  11. Characterizing Rat PNS Electrophysiological Response to Electrical Stimulation Using in vitro Chip-Based Human Investigational Platform (iCHIP)

    Energy Technology Data Exchange (ETDEWEB)

    Khani, Joshua [Georgetown Univ., Washington, DC (United States); Prescod, Lindsay [Georgetown Univ., Washington, DC (United States); Enright, Heather [Georgetown Univ., Washington, DC (United States); Felix, Sarah [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Osburn, Joanne [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Wheeler, Elizabeth [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Kulp, Kris [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)

    2015-08-18

    Ex vivo systems and organ-on-a-chip technology offer an unprecedented approach to modeling the inner workings of the human body. The ultimate goal of LLNL’s in vitro Chip-based Human Investigational Platform (iCHIP) is to integrate multiple organ tissue cultures using microfluidic channels, multi-electrode arrays (MEA), and other biosensors in order to effectively simulate and study the responses and interactions of the major organs to chemical and physical stimulation. In this study, we focused on the peripheral nervous system (PNS) component of the iCHIP system. Specifically we sought to expound on prior research investigating the electrophysiological response of rat dorsal root ganglion cells (rDRGs) to chemical exposures, such as capsaicin. Our aim was to establish a protocol for electrical stimulation using the iCHIP device that would reliably elicit a characteristic response in rDRGs. By varying the parameters for both the stimulation properties – amplitude, phase width, phase shape, and stimulation/ return configuration – and the culture conditions – day in vitro and neural cell types - we were able to make several key observations and uncover a potential convention with a minimal number of devices tested. Future work will seek to establish a standard protocol for human DRGs in the iCHIP which will afford a portable, rapid method for determining the effects of toxins and novel therapeutics on the PNS.

  12. A Transportable Gravity Gradiometer Based on Atom Interferometry

    Science.gov (United States)

    Yu, Nan; Thompson, Robert J.; Kellogg, James R.; Aveline, David C.; Maleki, Lute; Kohel, James M.

    2010-01-01

    A transportable atom interferometer-based gravity gradiometer has been developed at JPL to carry out measurements of Earth's gravity field at ever finer spatial resolutions, and to facilitate high-resolution monitoring of temporal variations in the gravity field from ground- and flight-based platforms. Existing satellite-based gravity missions such as CHAMP and GRACE measure the gravity field via precise monitoring of the motion of the satellites; i.e. the satellites themselves function as test masses. JPL's quantum gravity gradiometer employs a quantum phase measurement technique, similar to that employed in atomic clocks, made possible by recent advances in laser cooling and manipulation of atoms. This measurement technique is based on atomwave interferometry, and individual laser-cooled atoms are used as drag-free test masses. The quantum gravity gradiometer employs two identical atom interferometers as precision accelerometers to measure the difference in gravitational acceleration between two points (Figure 1). By using the same lasers for the manipulation of atoms in both interferometers, the accelerometers have a common reference frame and non-inertial accelerations are effectively rejected as common mode noise in the differential measurement of the gravity gradient. As a result, the dual atom interferometer-based gravity gradiometer allows gravity measurements on a moving platform, while achieving the same long-term stability of the best atomic clocks. In the laboratory-based prototype (Figure 2), the cesium atoms used in each atom interferometer are initially collected and cooled in two separate magneto-optic traps (MOTs). Each MOT, consisting of three orthogonal pairs of counter-propagating laser beams centered on a quadrupole magnetic field, collects up to 10(exp 9) atoms. These atoms are then launched vertically as in an atom fountain by switching off the magnetic field and introducing a slight frequency shift between pairs of lasers to create a moving

  13. Magnetohydrodynamic-based Laboratories on a Chip for Analysis of Biomolecules Project

    Data.gov (United States)

    National Aeronautics and Space Administration — A laboratory-on-a-chip design based on magnetohydrodynamic (MHD) microfluidics and integrated microelectrochemical detection is proposed. The proposed device is...

  14. An Emulsion System Based on a Chip Polymerase Chain Reaction

    Directory of Open Access Journals (Sweden)

    Pinfei Yu

    2008-12-01

    Full Text Available In this paper we describe a novel method for detecting many DNA fragments through efficient amplification by using an emulsion system based on “on-chip” PCR instead of conventional multiplex polymerase chain reaction (PCR. During the preparation of on-chip PCR, a set of primers were immobilized on a slide and other sets were in an emulsion system. Different emulsion phase primers and other related PCR components were dispersed in different droplets of the emulsion system, and then, due to the thermal instability of emulsion droplets, they would be released onto the surface of the slide after preheating in the first PCR step. To test the above method, we used plasma DNAs from pregnant women who was carrying a male fetus for gender identification. Four different Y chromosome DNA fragments were selected. Results showed that different DNA fragments could be simultaneously amplified with satisfactory results. It is suggested that a simple, convenient and inexpensive on-chip PCR method has been developed.

  15. A multi-chip data acquisition system based on a heterogeneous system-on-chip platform

    CERN Document Server

    Fiergolski, Adrian

    2017-01-01

    The Control and Readout Inner tracking BOard (CaRIBOu) is a versatile readout system targeting a multitude of detector prototypes. It profits from the heterogeneous platform of the Zynq System-on-Chip (SoC) and integrates in a monolithic device front-end FPGA resources with a back-end software running on a hard-core ARM-based processor. The user-friendly Linux terminal with the pre-installed DAQ software is combined with the efficiency and throughput of a system fully implemented in the FPGA fabric. The paper presents the design of the SoC-based DAQ system and its building blocks. It also shows examples of the achieved functionality for the CLICpix2 readout ASIC.

  16. A Nanofiber-Based Optical Conveyor Belt for Cold Atoms

    CERN Document Server

    Schneeweiss, Philipp; Mitsch, Rudolf; Reitz, Daniel; Vetsch, Eugen; Rauschenbeutel, Arno

    2012-01-01

    We demonstrate optical transport of cold cesium atoms over millimeter-scale distances along an optical nanofiber. The atoms are trapped in a one-dimensional optical lattice formed by a two-color evanescent field surrounding the nanofiber, far red- and blue-detuned with respect to the atomic transition. The blue-detuned field is a propagating nanofiber-guided mode while the red-detuned field is a standing-wave mode which leads to the periodic axial confinement of the atoms. Here, this standing wave is used for transporting the atoms along the nanofiber by mutually detuning the two counter-propagating fields which form the standing wave. The performance and limitations of the nanofiber-based transport are evaluated and possible applications are discussed.

  17. Fabrication LSPR sensor chip of Ag NPs and their biosensor application based on interparticle coupling

    Energy Technology Data Exchange (ETDEWEB)

    Ghodselahi, T., E-mail: t_ghodselahi@yahoo.com [Nano Mabna Iranian Inc., PO Box 1676664116, Tehran (Iran, Islamic Republic of); School of Physics, Institute for Research in Fundamental Sciences, PO Box 19395-5531, Tehran (Iran, Islamic Republic of); Neishaboorynejad, T. [School of Physics, Institute for Research in Fundamental Sciences, PO Box 19395-5531, Tehran (Iran, Islamic Republic of); Department of Physics, Central Tehran Branch, Islamic Azad University, Tehran (Iran, Islamic Republic of); Arsalani, S. [School of Physics, Institute for Research in Fundamental Sciences, PO Box 19395-5531, Tehran (Iran, Islamic Republic of); School of Medicine, Bam University of Medical Sciences, Bam (Iran, Islamic Republic of)

    2015-07-15

    Highlights: • Localized surface plasmon resonance (LSPR) sensor of silver nanoparticles on hydrogenated amorphous carbon thin film were synthetized by co-deposition of RF-sputtering and RF-PECVD. • Samples were characterized by XRD, XPS, AFM, and UV visible. • DNA primer at fM concentration was detected based on breaking of inter-particles coupling. • Dipolar plasmon of isolated Ag NPs, coupled Ag NPs plasmons, in-plane and out-plane coupling, and quadrupole plasmon modes were considered to explain biosensor properties. • The initial response, wavelength shift sensitivity, and response time of LSPR sensors were compared by morphology. - Abstract: We introduce a simple method to synthesize localized surface plasmon resonance (LSPR) sensor chip of Ag NPs on the hydrogenated amorphous carbon by co-deposition of RF-Sputtering and RF-PECVD. The X-ray photoelectron spectroscopy revealed the content of Ag and C atoms. X-ray diffraction profile and atomic force microscopy indicate that the Ag NPs have fcc crystal structure and spherical shape and by increasing deposition time, particle sizes do not vary and only Ag NPs aggregation occurs, resulting in LSPR wavelength shift. Firstly, by increasing Ag NPs content, in-plan interparticles coupling is dominant and causes redshift in LSPR. At the early stage of agglomeration, out-plane coupling occurs and in-plane coupling is reduced, resulting a blueshift in the LSPR. By further increasing of Ag NPs content, agglomeration is completed on the substrate and in-plan coupling rises, resulting significant redshift in the LSPR. Results were used to implement biosensor application of chips. Detection of DNA primer at fM concentration was achieved based on breaking interparticles coupling of Ag NPs. A significant wavelength shift sensitivity of 30 nm and a short response time of 30 min were obtained, where both of these are prerequisite for biosensor applications.

  18. Real-time tunability of chip-based light source enabled by microfluidic mixing

    DEFF Research Database (Denmark)

    Olsen, Brian Bilenberg; Rasmussen, Torben; Balslev, Søren

    2006-01-01

    We demonstrate real-time tunability of a chip-based liquid light source enabled by microfluidic mixing. The mixer and light source are fabricated in SU-8 which is suitable for integration in SU-8-based laboratory-on-a-chip microsystems. The tunability of the light source is achieved by changing...

  19. A single-chip event sequencer and related microcontroller instrumentation for atomic physics research.

    Science.gov (United States)

    Eyler, E E

    2011-01-01

    A 16-bit digital event sequencer with 50 ns resolution and 50 ns trigger jitter is implemented by using an internal 32-bit timer on a dsPIC30F4013 microcontroller, controlled by an easily modified program written in standard C. It can accommodate hundreds of output events, and adjacent events can be spaced as closely as 1.5 μs. The microcontroller has robust 5 V inputs and outputs, allowing a direct interface to common laboratory equipment and other electronics. A USB computer interface and a pair of analog ramp outputs can be added with just two additional chips. An optional display/keypad unit allows direct interaction with the sequencer without requiring an external computer. Minor additions also allow simple realizations of other complex instruments, including a precision high-voltage ramp generator for driving spectrum analyzers or piezoelectric positioners, and a low-cost proportional integral differential controller and lock-in amplifier for laser frequency stabilization with about 100 kHz bandwidth.

  20. Metamaterial perfect absorber based on artificial dielectric "atoms".

    Science.gov (United States)

    Liu, Xiaoming; Bi, Ke; Li, Bo; Zhao, Qian; Zhou, Ji

    2016-09-05

    In this work, we numerically designed and then experimentally verified a metamaterial perfect absorber based on artificial dielectric "atoms". This metamaterial absorber is composed of dielectric ceramic material (SrTiO3) "atoms" embedded in a background matrix on a metal plate. The dielectric "atoms" couple strongly to the incident electric and magnetic fields at the Mie resonance mode, leading to the narrow perfect absorption band with simulated and experimental absorptivities of 99% and 98.5% at 8.96 GHz, respectively. The designed metamaterial perfect absorber is polarization insensitive and can operate in wide angle incidence.

  1. Rydberg-atom-based scheme of nonadiabatic geometric quantum computation

    Science.gov (United States)

    Zhao, P. Z.; Cui, Xiao-Dan; Xu, G. F.; Sjöqvist, Erik; Tong, D. M.

    2017-11-01

    Nonadiabatic geometric quantum computation provides a means to perform fast and robust quantum gates. It has been implemented in various physical systems, such as trapped ions, nuclear magnetic resonance, and superconducting circuits. Another system being adequate for implementation of nonadiabatic geometric quantum computation may be Rydberg atoms, since their internal states have very long coherence time and the Rydberg-mediated interaction facilitates the implementation of a two-qubit gate. Here, we propose a scheme of nonadiabatic geometric quantum computation based on Rydberg atoms, which combines the robustness of nonadiabatic geometric gates with the merits of Rydberg atoms.

  2. An integrated, multiparametric flow cytometry chip using "microfluidic drifting" based three-dimensional hydrodynamic focusing.

    Science.gov (United States)

    Mao, Xiaole; Nawaz, Ahmad Ahsan; Lin, Sz-Chin Steven; Lapsley, Michael Ian; Zhao, Yanhui; McCoy, J Philip; El-Deiry, Wafik S; Huang, Tony Jun

    2012-06-01

    In this work, we demonstrate an integrated, single-layer, miniature flow cytometry device that is capable of multi-parametric particle analysis. The device integrates both particle focusing and detection components on-chip, including a "microfluidic drifting" based three-dimensional (3D) hydrodynamic focusing component and a series of optical fibers integrated into the microfluidic architecture to facilitate on-chip detection. With this design, multiple optical signals (i.e., forward scatter, side scatter, and fluorescence) from individual particles can be simultaneously detected. Experimental results indicate that the performance of our flow cytometry chip is comparable to its bulky, expensive desktop counterpart. The integration of on-chip 3D particle focusing with on-chip multi-parametric optical detection in a single-layer, mass-producible microfluidic device presents a major step towards low-cost flow cytometry chips for point-of-care clinical diagnostics.

  3. Nondestructive diagnosis of flip chips based on vibration analysis using PCA-RBF

    Science.gov (United States)

    Su, Lei; Shi, Tielin; Liu, Zhiping; Zhou, Hongdi; Du, Li; Liao, Guanglan

    2017-02-01

    Flip chip technology combined with solder bump interconnection has been widely applied in IC package. The solder bumps are sandwiched between dies and substrates, leading to conventional techniques being difficult to diagnose the flip chips. Meanwhile, these conventional diagnosis methods are usually performed by human visual judgment. The human eye-fatigue can easily cause fault detection. Thus, it is difficult and crucial to detect the defects of flip chips automatically. In this paper, a nondestructive diagnosis system based on vibration analysis is proposed. The flip chip is excited by air-coupled ultrasounds and raw vibration signals are measured by a laser scanning vibrometer. Forty-two features are extracted for analysis, including ten time domain features, sixteen frequency domain features and sixteen wavelet packet energy features. Principal component analysis is used for feature reduction. Radial basis function neural network is adopted for classification and recognition. Flip chips in three states (good flip chips, flip chips with missing solder bumps and flip chips with open solder bumps) are utilized to validate the proposed method. The results demonstrate that this method is effective for defect inspection in flip chip package.

  4. Neural network predicts sequence of TP53 gene based on DNA chip

    DEFF Research Database (Denmark)

    Spicker, J.S.; Wikman, F.; Lu, M.L.

    2002-01-01

    We have trained an artificial neural network to predict the sequence of the human TP53 tumor suppressor gene based on a p53 GeneChip. The trained neural network uses as input the fluorescence intensities of DNA hybridized to oligonucleotides on the surface of the chip and makes between zero...

  5. Atomic Action Refinement in Model Based Testing

    NARCIS (Netherlands)

    van der Bijl, H.M.; Rensink, Arend; Tretmans, G.J.

    2007-01-01

    In model based testing (MBT) test cases are derived from a specification of the system that we want to test. In general the specification is more abstract than the implementation. This may result in 1) test cases that are not executable, because their actions are too abstract (the implementation

  6. Embedded 3D Graphics Core for FPGA-based System-on-Chip Applications

    DEFF Research Database (Denmark)

    Holten-Lund, Hans Erik

    2005-01-01

    This paper presents a 3D graphics accelerator core for an FPGA based system, and illustrates how to build a System-on-Chip containing a Xilinx MicroBlaze soft-core CPU and our 3D graphics accelerator core. The system is capable of running uClinux and hardware accelerated 3D graphics applications...... such as a VRML viewer. The 3D graphics core is connected to a PLB 64-bit on-chip bus, and can render graphics into an on-chip tile buffer, which is later copied, using bus-master DMA transfers, to the frame-buffer in external DDR SDRAM memory. This memory is shared between the CPU, the 3D graphics core...... consumption is reduced as well. We show how an FPGA based embedded system is capable of most tasks in a single chip solution, without requiring additional CPU or graphics chips....

  7. A simulation-based design method to transfer surface mount RF system to flip-chip die implementation

    OpenAIRE

    Zheng, Liqiang; Rodgers, Kenneth; Mathewson, Alan; O'Flynn, Brendan; Hayes, Michael; Ó Mathúna, S. Cian

    2010-01-01

    The flip-chip technology is a high chip density solution to meet the demand for very large scale integration design. For wireless sensor node or some similar RF applications, due to the growing requirements for the wearable and implantable implementations, flip-chip appears to be a leading technology to realize the integration and miniaturization. In this paper, flip-chip is considered as part of the whole system to affect the RF performance. A simulation based design is presented to transfer...

  8. Integrated on-chip solid state capacitor based on vertically aligned carbon nanofibers, grown using a CMOS temperature compatible process

    Science.gov (United States)

    Saleem, Amin M.; Andersson, Rickard; Desmaris, Vincent; Enoksson, Peter

    2018-01-01

    Complete miniaturized on-chip integrated solid-state capacitors have been fabricated based on conformal coating of vertically aligned carbon nanofibers (VACNFs), using a CMOS temperature compatible microfabrication processes. The 5 μm long VACNFs, operating as electrode, are grown on a silicon substrate and conformally coated by aluminum oxide dielectric using atomic layer deposition (ALD) technique. The areal (footprint) capacitance density value of 11-15 nF/mm2 is realized with high reproducibility. The CMOS temperature compatible microfabrication, ultra-low profile (less than 7 μm thickness) and high capacitance density would enables direct integration of micro energy storage devices on the active CMOS chip, multi-chip package and passives on silicon or glass interposer. A model is developed to calculate the surface area of VACNFs and the effective capacitance from the devices. It is thereby shown that 71% of surface area of the VACNFs has contributed to the measured capacitance, and by using the entire area the capacitance can potentially be increased.

  9. Long-Term Stability of NIST Chip-Scale Atomic Clock Physics Packages

    Science.gov (United States)

    2007-01-01

    L. Moi, and G. Orriols, 1976, “ Experimental -Method for Observation of Rf Transitions and Laser Beat Resonances in Oriented Na Vapor,” Nuovo Cimento...della Societa Italiana di Fisica B-General Physics, Relativity, Astronomy, and Mathematical Physics and Methods, 36, 5-20. [16] N. Cyr, M. Têtu...2000, “Theoretical and experimental study of light shift in a CPT-based Rb vapor cell frequency standard,” in Proceedings of the 32nd Annual Precise

  10. Hybrid Macro-Micro Fluidics System for a Chip-Based Biosensor

    National Research Council Canada - National Science Library

    Tamanaha, C. R; Whitman, L. J; Colton, R.J

    2002-01-01

    We describe the engineering of a hybrid fluidics platform for a chip-based biosensor system that combines high-performance microfluidics components with powerful, yet compact, millimeter-scale pump and valve actuators...

  11. Develop draft chip seal cover aggregate specification based on AIMS angularity, shape and texture test results.

    Science.gov (United States)

    2013-03-01

    The objective of the study is to improve Oklahoma Department of Transportation (ODOT) chip : seal design and performance through introducing new criteria for the selection of cover : aggregate and binder. These criteria will be based upon the recent ...

  12. Energy Harvesting Chip and the Chip Based Power Supply Development for a Wireless Sensor Network.

    Science.gov (United States)

    Lee, Dasheng

    2008-12-02

    In this study, an energy harvesting chip was developed to scavenge energy from artificial light to charge a wireless sensor node. The chip core is a miniature transformer with a nano-ferrofluid magnetic core. The chip embedded transformer can convert harvested energy from its solar cell to variable voltage output for driving multiple loads. This chip system yields a simple, small, and more importantly, a battery-less power supply solution. The sensor node is equipped with multiple sensors that can be enabled by the energy harvesting power supply to collect information about the human body comfort degree. Compared with lab instruments, the nodes with temperature, humidity and photosensors driven by harvested energy had variation coefficient measurement precision of less than 6% deviation under low environmental light of 240 lux. The thermal comfort was affected by the air speed. A flow sensor equipped on the sensor node was used to detect airflow speed. Due to its high power consumption, this sensor node provided 15% less accuracy than the instruments, but it still can meet the requirement of analysis for predicted mean votes (PMV) measurement. The energy harvesting wireless sensor network (WSN) was deployed in a 24-hour convenience store to detect thermal comfort degree from the air conditioning control. During one year operation, the sensor network powered by the energy harvesting chip retained normal functions to collect the PMV index of the store. According to the one month statistics of communication status, the packet loss rate (PLR) is 2.3%, which is as good as the presented results of those WSNs powered by battery. Referring to the electric power records, almost 54% energy can be saved by the feedback control of an energy harvesting sensor network. These results illustrate that, scavenging energy not only creates a reliable power source for electronic devices, such as wireless sensor nodes, but can also be an energy source by building an energy efficient

  13. Energy Harvesting Chip and the Chip Based Power Supply Development for a Wireless Sensor Network

    Directory of Open Access Journals (Sweden)

    Dasheng Lee

    2008-12-01

    Full Text Available In this study, an energy harvesting chip was developed to scavenge energy from artificial light to charge a wireless sensor node. The chip core is a miniature transformer with a nano-ferrofluid magnetic core. The chip embedded transformer can convert harvested energy from its solar cell to variable voltage output for driving multiple loads. This chip system yields a simple, small, and more importantly, a battery-less power supply solution. The sensor node is equipped with multiple sensors that can be enabled by the energy harvesting power supply to collect information about the human body comfort degree. Compared with lab instruments, the nodes with temperature, humidity and photosensors driven by harvested energy had variation coefficient measurement precision of less than 6% deviation under low environmental light of 240 lux. The thermal comfort was affected by the air speed. A flow sensor equipped on the sensor node was used to detect airflow speed. Due to its high power consumption, this sensor node provided 15% less accuracy than the instruments, but it still can meet the requirement of analysis for predicted mean votes (PMV measurement. The energy harvesting wireless sensor network (WSN was deployed in a 24-hour convenience store to detect thermal comfort degree from the air conditioning control. During one year operation, the sensor network powered by the energy harvesting chip retained normal functions to collect the PMV index of the store. According to the one month statistics of communication status, the packet loss rate (PLR is 2.3%, which is as good as the presented results of those WSNs powered by battery. Referring to the electric power records, almost 54% energy can be saved by the feedback control of an energy harvesting sensor network. These results illustrate that, scavenging energy not only creates a reliable power source for electronic devices, such as wireless sensor nodes, but can also be an energy source by building an

  14. Modeling and optimizing of the random atomic spin gyroscope drift based on the atomic spin gyroscope.

    Science.gov (United States)

    Quan, Wei; Lv, Lin; Liu, Baiqi

    2014-11-01

    In order to improve the atom spin gyroscope's operational accuracy and compensate the random error caused by the nonlinear and weak-stability characteristic of the random atomic spin gyroscope (ASG) drift, the hybrid random drift error model based on autoregressive (AR) and genetic programming (GP) + genetic algorithm (GA) technique is established. The time series of random ASG drift is taken as the study object. The time series of random ASG drift is acquired by analyzing and preprocessing the measured data of ASG. The linear section model is established based on AR technique. After that, the nonlinear section model is built based on GP technique and GA is used to optimize the coefficients of the mathematic expression acquired by GP in order to obtain a more accurate model. The simulation result indicates that this hybrid model can effectively reflect the characteristics of the ASG's random drift. The square error of the ASG's random drift is reduced by 92.40%. Comparing with the AR technique and the GP + GA technique, the random drift is reduced by 9.34% and 5.06%, respectively. The hybrid modeling method can effectively compensate the ASG's random drift and improve the stability of the system.

  15. Modeling and optimizing of the random atomic spin gyroscope drift based on the atomic spin gyroscope

    Energy Technology Data Exchange (ETDEWEB)

    Quan, Wei; Lv, Lin, E-mail: lvlinlch1990@163.com; Liu, Baiqi [School of Instrument Science and Opto-Electronics Engineering, Beihang University, Beijing 100191 (China)

    2014-11-15

    In order to improve the atom spin gyroscope's operational accuracy and compensate the random error caused by the nonlinear and weak-stability characteristic of the random atomic spin gyroscope (ASG) drift, the hybrid random drift error model based on autoregressive (AR) and genetic programming (GP) + genetic algorithm (GA) technique is established. The time series of random ASG drift is taken as the study object. The time series of random ASG drift is acquired by analyzing and preprocessing the measured data of ASG. The linear section model is established based on AR technique. After that, the nonlinear section model is built based on GP technique and GA is used to optimize the coefficients of the mathematic expression acquired by GP in order to obtain a more accurate model. The simulation result indicates that this hybrid model can effectively reflect the characteristics of the ASG's random drift. The square error of the ASG's random drift is reduced by 92.40%. Comparing with the AR technique and the GP + GA technique, the random drift is reduced by 9.34% and 5.06%, respectively. The hybrid modeling method can effectively compensate the ASG's random drift and improve the stability of the system.

  16. Error analysis for pesticide detection performed on paper-based microfluidic chip devices

    Science.gov (United States)

    Yang, Ning; Shen, Kai; Guo, Jianjiang; Tao, Xinyi; Xu, Peifeng; Mao, Hanping

    2017-07-01

    Paper chip is an efficient and inexpensive device for pesticide residues detection. However, the reasons of detection error are not clear, which is the main problem to hinder the development of pesticide residues detection. This paper focuses on error analysis for pesticide detection performed on paper-based microfluidic chip devices, which test every possible factor to build the mathematical models for detection error. In the result, double-channel structure is selected as the optimal chip structure to reduce detection error effectively. The wavelength of 599.753 nm is chosen since it is the most sensitive detection wavelength to the variation of pesticide concentration. At last, the mathematical models of detection error for detection temperature and prepared time are concluded. This research lays a theory foundation on accurate pesticide residues detection based on paper-based microfluidic chip devices.

  17. Mission Profile Based Sizing of IGBT Chip Area for PV Inverter Applications

    DEFF Research Database (Denmark)

    Shen, Yanfeng; Wang, Huai; Yang, Yongheng

    2016-01-01

    Maximizing the total energy generation is of importance for Photovoltaic (PV) plants. This paper proposes a method to optimize the IGBT chip area for PV inverters to minimize the annual energy loss of the active switches based on long-term operation conditions (i.e., mission profile). The design...... process is firstly introduced. Then the power loss, thermal characteristic and lifetime for IGBT modules with different chip areas are modeled. After that, the dependence of the annual energy loss and maximum junction temperature on the IGBT chip area and switching frequency is derived under a specific...

  18. A Universal Intelligent System-on-Chip Based Sensor Interface

    Directory of Open Access Journals (Sweden)

    Gabriele Ferri

    2010-08-01

    Full Text Available The need for real-time/reliable/low-maintenance distributed monitoring systems, e.g., wireless sensor networks, has been becoming more and more evident in many applications in the environmental, agro-alimentary, medical, and industrial fields. The growing interest in technologies related to sensors is an important indicator of these new needs. The design and the realization of complex and/or distributed monitoring systems is often difficult due to the multitude of different electronic interfaces presented by the sensors available on the market. To address these issues the authors propose the concept of a Universal Intelligent Sensor Interface (UISI, a new low-cost system based on a single commercial chip able to convert a generic transducer into an intelligent sensor with multiple standardized interfaces. The device presented offers a flexible analog and/or digital front-end, able to interface different transducer typologies (such as conditioned, unconditioned, resistive, current output, capacitive and digital transducers. The device also provides enhanced processing and storage capabilities, as well as a configurable multi-standard output interface (including plug-and-play interface based on IEEE 1451.3. In this work the general concept of UISI and the design of reconfigurable hardware are presented, together with experimental test results validating the proposed device.

  19. A universal intelligent system-on-chip based sensor interface.

    Science.gov (United States)

    Mattoli, Virgilio; Mondini, Alessio; Mazzolai, Barbara; Ferri, Gabriele; Dario, Paolo

    2010-01-01

    The need for real-time/reliable/low-maintenance distributed monitoring systems, e.g., wireless sensor networks, has been becoming more and more evident in many applications in the environmental, agro-alimentary, medical, and industrial fields. The growing interest in technologies related to sensors is an important indicator of these new needs. The design and the realization of complex and/or distributed monitoring systems is often difficult due to the multitude of different electronic interfaces presented by the sensors available on the market. To address these issues the authors propose the concept of a Universal Intelligent Sensor Interface (UISI), a new low-cost system based on a single commercial chip able to convert a generic transducer into an intelligent sensor with multiple standardized interfaces. The device presented offers a flexible analog and/or digital front-end, able to interface different transducer typologies (such as conditioned, unconditioned, resistive, current output, capacitive and digital transducers). The device also provides enhanced processing and storage capabilities, as well as a configurable multi-standard output interface (including plug-and-play interface based on IEEE 1451.3). In this work the general concept of UISI and the design of reconfigurable hardware are presented, together with experimental test results validating the proposed device.

  20. [Measurement of atomic number of alkali vapor and pressure of buffer gas based on atomic absorption].

    Science.gov (United States)

    Zheng, Hui-jie; Quan, Wei; Liu, Xiang; Chen, Yao; Lu, Ji-xi

    2015-02-01

    High sensitivitymagnetic measurementscanbe achieved by utilizing atomic spinmanipulation in the spin-exchange-relaxation-free (SERF) regime, which uses an alkali cell as a sensing element. The atomic number density of the alkali vapor and the pressure of the buffer gasare among the most important parameters of the cell andrequire accurate measurement. A method has been proposed and developedto measure the atomic number density and the pressure based on absorption spectroscopy, by sweeping the absorption line and fittingthe experiment data with a Lorentzian profile to obtainboth parameters. Due to Doppler broadening and pressure broadening, which is mainly dominated by the temperature of the cell and the pressure of buffer gas respectively, this work demonstrates a simulation of the errorbetween the peaks of the Lorentzian profile and the Voigt profile caused by bothfactors. The results indicates that the Doppler broadening contribution is insignificant with an error less than 0.015% at 313-513 K for a 4He density of 2 amg, and an error of 0.1% in the presence of 0.6-5 amg at 393 K. We conclude that the Doppler broadening could be ignored under above conditions, and that the Lorentzianprofile is suitably applied to fit the absorption spectrumobtainingboth parameters simultaneously. In addition we discuss the resolution and the instability due to thelight source, wavelength and the temperature of the cell. We find that the cell temperature, whose uncertainty is two orders of magnitude larger than the instability of the light source and the wavelength, is one of the main factors which contributes to the error.

  1. On-Chip Power-Combining for High-Power Schottky Diode Based Frequency Multipliers

    Science.gov (United States)

    Siles Perez, Jose Vicente (Inventor); Chattopadhyay, Goutam (Inventor); Lee, Choonsup (Inventor); Schlecht, Erich T. (Inventor); Jung-Kubiak, Cecile D. (Inventor); Mehdi, Imran (Inventor)

    2015-01-01

    A novel MMIC on-chip power-combined frequency multiplier device and a method of fabricating the same, comprising two or more multiplying structures integrated on a single chip, wherein each of the integrated multiplying structures are electrically identical and each of the multiplying structures include one input antenna (E-probe) for receiving an input signal in the millimeter-wave, submillimeter-wave or terahertz frequency range inputted on the chip, a stripline based input matching network electrically connecting the input antennas to two or more Schottky diodes in a balanced configuration, two or more Schottky diodes that are used as nonlinear semiconductor devices to generate harmonics out of the input signal and produce the multiplied output signal, stripline based output matching networks for transmitting the output signal from the Schottky diodes to an output antenna, and an output antenna (E-probe) for transmitting the output signal off the chip into the output waveguide transmission line.

  2. Solid state silicon based condenser microphone for hearing aid, has transducer chip and IC chip between intermediate chip and openings on both sides of intermediate chip, to allow sound towards diaphragm

    DEFF Research Database (Denmark)

    2000-01-01

    NOVELTY - A silicon transducer chip (1) has parallel backplate and movable diaphragm (12) and forms an electrical capacitor. The chip and electronic circuit chip (3) are provided on either sides of intermediate chip (2). The chip (2) has openings (4,10) between two sides of the chip, to allow sound...... towards diaphragm. Surface of the chip (2) has electrical conductors (14) to connect chip with IC chip (3). USE - For use in miniature electroacoustic devices such as hearing aid. ADVANTAGE - Since sound inlet is covered by filter, dust, moisture and other impurities do not obstruct interior and sound...

  3. Enhanced on-chip SERS based biomolecular detection using electrokinetically active microwells†

    OpenAIRE

    Huh, Yun Suk; Chung, Aram J.; Cordovez, Bernardo; Erickson, David

    2008-01-01

    Here we present a novel microfluidic technique for on-chip surface enhanced Raman spectroscopy (SERS) based biomolecular detection, exploiting the use of electrokinetically active microwells. Briefly, the chip comprises of a series of microfluidic channels containing embedded microwells that, when electrically actuated, either locally attract or repulse species from solution through a combination of electrokinetic effects. We demonstrate that the approach combines the advantages of existing h...

  4. Simulations of Ground and Space-Based Oxygen Atom Experiments

    Science.gov (United States)

    Minton, T. K.; Cline, J. A.; Braunstein, M.

    2002-01-01

    Fast, pulsed atomic oxygen sources are a key tool in ground-based investigations of spacecraft contamination and surface erosion effects. These technically challenging ground-based studies provide a before and after picture of materials under low-earth-orbit (LEO) conditions. It would be of great interest to track in real time the pulsed flux from the source to the surface sample target and beyond in order to characterize the population of atoms and molecules that actually impact the surface and those that make it downstream to any coincident detectors. We have performed simulations in order to provide such detailed descriptions of these ground-based measurements and to provide an assessment of their correspondence to the actual LEO environment. Where possible we also make comparisons to measured fluxes and erosion yields. To perform the calculations we use a detailed description of a measurement beam and surface geometry based on the W, pulsed apparatus at Montana State University. In this system, a short pulse (on the order of 10 microseconds) of an O/O2 beam impacts a flat sample about 40 cm downstream and slightly displaced &om the beam s central axis. Past this target, at the end of the beam axis is a quadrupole mass spectrometer that measures the relative in situ flux of 0102 to give an overall normalized erosion yield. In our simulations we use the Direct Simulation Monte Carlo (DSMC) method, and track individual atoms within the atomic oxygen pulse. DSMC techniques are typically used to model rarefied (few collision) gas-flows which occur at altitudes above approximately 110 kilometers. These techniques are well suited for the conditions here, and multi-collision effects that can only be treated by this or a similar technique are included. This simulation includes collisions with the surface and among gas atoms that have scattered from the surface. The simulation also includes descriptions of the velocity spread and spatial profiles of the O/O2 beam

  5. Single-chip photonic transceiver based on bulk-silicon, as a chip-level photonic I/O platform for optical interconnects.

    Science.gov (United States)

    Kim, Gyungock; Park, Hyundai; Joo, Jiho; Jang, Ki-Seok; Kwack, Myung-Joon; Kim, Sanghoon; Kim, In Gyoo; Oh, Jin Hyuk; Kim, Sun Ae; Park, Jaegyu; Kim, Sanggi

    2015-06-10

    When silicon photonic integrated circuits (PICs), defined for transmitting and receiving optical data, are successfully monolithic-integrated into major silicon electronic chips as chip-level optical I/Os (inputs/outputs), it will bring innovative changes in data computing and communications. Here, we propose new photonic integration scheme, a single-chip optical transceiver based on a monolithic-integrated vertical photonic I/O device set including light source on bulk-silicon. This scheme can solve the major issues which impede practical implementation of silicon-based chip-level optical interconnects. We demonstrated a prototype of a single-chip photonic transceiver with monolithic-integrated vertical-illumination type Ge-on-Si photodetectors and VCSELs-on-Si on the same bulk-silicon substrate operating up to 50 Gb/s and 20 Gb/s, respectively. The prototype realized 20 Gb/s low-power chip-level optical interconnects for λ ~ 850 nm between fabricated chips. This approach can have a significant impact on practical electronic-photonic integration in high performance computers (HPC), cpu-memory interface, hybrid memory cube, and LAN, SAN, data center and network applications.

  6. Heisenberg-limited atom clocks based on entangled qubits.

    Science.gov (United States)

    Kessler, E M; Kómár, P; Bishof, M; Jiang, L; Sørensen, A S; Ye, J; Lukin, M D

    2014-05-16

    We present a quantum-enhanced atomic clock protocol based on groups of sequentially larger Greenberger-Horne-Zeilinger (GHZ) states that achieves the best clock stability allowed by quantum theory up to a logarithmic correction. Importantly the protocol is designed to work under realistic conditions where the drift of the phase of the laser interrogating the atoms is the main source of decoherence. The simultaneous interrogation of the laser phase with a cascade of GHZ states realizes an incoherent version of the phase estimation algorithm that enables Heisenberg-limited operation while extending the coherent interrogation time beyond the laser noise limit. We compare and merge the new protocol with existing state of the art interrogation schemes, and identify the precise conditions under which entanglement provides an advantage for clock stabilization: it allows a significant gain in the stability for short averaging time.

  7. A flip chip process based on electroplated solder bumps

    Science.gov (United States)

    Salonen, J.; Salmi, J.

    1994-01-01

    Compared to wire bonding and TAB, flip chip technology using solder joints offers the highest pin count and packaging density and superior electrical performance. The chips are mounted upside down on the substrate, which can be made of silicon, ceramic, glass or - in some cases - even PCB. The extra processing steps required for chips are the deposition of a suitable thin film metal layer(s) on the standard Al pad and the formation of bumps. Also, the development of new fine line substrate technologies is required to utilize the full potential of the technology. In our bumping process, bump deposition is done by electroplating, which was chosen for its simplicity and economy. Sputter deposited molybdenum and copper are used as thin film layers between the aluminum pads and the solder bumps. A reason for this choice is that the metals can be selectively etched after bumping using the bumps as a mask, thus circumventing the need for a separate mask for etching the thin film metals. The bumps are electroplated from a binary Pb-Sn bath using a thick liquid photoresist. An extensively modified commercial flip chip bonder is used for alignment and bonding. Heat assisted tack bonding is used to attach the chips to the substrate, and final reflow joining is done without flux in a vacuum furnace.

  8. Biofunctionalization of electrowetting-on-dielectric digital microfluidic chips for miniaturized cell-based applications.

    Science.gov (United States)

    Witters, Daan; Vergauwe, Nicolas; Vermeir, Steven; Ceyssens, Frederik; Liekens, Sandra; Puers, Robert; Lammertyn, Jeroen

    2011-08-21

    In this paper we report on the controlled biofunctionalization of the hydrophobic layer of electrowetting-on-dielectric (EWOD) based microfluidic chips with the aim to execute (adherent) cell-based assays. The biofunctionalization technique involves a dry lift-off method with an easy to remove Parylene-C mask and allows the creation of spatially controlled micropatches of biomolecules in the Teflon-AF(®) layer of the chip. Compared to conventional methods, this method (i) is fully biocompatible; and (ii) leaves the hydrophobicity of the chip surface unaffected by the fabrication process, which is a crucial feature for digital microfluidic chips. In addition, full control of the geometry and the dimensions of the micropatches is achieved, allowing cells to be arrayed as cell clusters or as single cells on the digital microfluidic chip surface. The dry Parylene-C lift-off technique proves to have great potential for precise biofunctionalization of digital microfluidic chips, and can enhance their use for heterogeneous bio-assays that are of interest in various biomedical applications. This journal is © The Royal Society of Chemistry 2011

  9. Single-nucleotide polymorphism typing based on pyrosequencing chemistry and acryl-modified glass chip.

    Science.gov (United States)

    Huang, Huan; Wu, Haiping; Xiao, Pengfeng; Zhou, Guohua

    2009-03-01

    A new method (termed as "chip-BAMPER" (bioluminometric assay coupled with modified primer extension reactions)) for single-nucleotide polymorphism (SNPs) genotyping was developed by pyrosequencing chemistry coupled with hydrogel chip immobilized with single-stranded target DNAs. The method is based on allele-specific extension reaction, which is switched by the base type in the 3' end of allele-specific primers. A genotype is determined by comparing the light intensity from a pair of gel pads, and the specificity is improved by introducing an artificially mismatched base at the third position upstream from the 3' end of the allele-specific primer. The big problem of chip-BAMPER is the ultra-high background of the detection mixture because apyrase could not be used. Here, we successfully prepared and used beaded apyrase, which can be removed from the detection mixture before sample typing, to decrease the high background due to adenosine 5'-triphosphate and inorganic pyrophosphate or sodium pyrophosphate decahydrate contamination. Unlike gel-based pyrosequencing, chip-BAMPER is highly sensitive because many bases are extended at a time in one extension reaction. Usually, less than 0.25 microL of PCR products can give a successful genotyping. To evaluate the method, four SNPs, OLR1-C15577T, OLR1-C14417G, PPARG-Pro12Ala, and PPARG-C2821T, were detected. To avoid the crosstalk between two adjacent spots in a gel-chip, mineral oil was dispensed to coat the gel-chip for physically separating two spots. It is shown that this new strategy of SNP typing based on the acryl-modified glass chip is highly sensitive, simple, inexpensive, and easy to be automated. It can be used for various applications of DNA analysis at a relative high-throughput.

  10. Low-Cost Energy-Efficient 3-D Nano-Spikes-Based Electric Cell Lysis Chips

    KAUST Repository

    Riaz, Kashif

    2017-05-04

    Electric cell lysis (ECL) is a promising technique to be integrated with portable lab-on-a-chip without lysing agent due to its simplicity and fast processing. ECL is usually limited by the requirements of high power/voltage and costly fabrication. In this paper, we present low-cost 3-D nano-spikes-based ECL (NSP-ECL) chips for efficient cell lysis at low power consumption. Highly ordered High-Aspect-Ratio (HAR). NSP arrays with controllable dimensions were fabricated on commercial aluminum foils through scalable and electrochemical anodization and etching. The optimized multiple pulse protocols with minimized undesirable electrochemical reactions (gas and bubble generation), common on micro parallel-plate ECL chips. Due to the scalability of fabrication process, 3-D NSPs were fabricated on small chips as well as on 4-in wafers. Phase diagram was constructed by defining critical electric field to induce cell lysis and for cell lysis saturation Esat to define non-ECL and ECL regions for different pulse parameters. NSP-ECL chips have achieved excellent cell lysis efficiencies ηlysis (ca 100%) at low applied voltages (2 V), 2~3 orders of magnitude lower than that of conventional systems. The energy consumption of NSP-ECL chips was 0.5-2 mJ/mL, 3~9 orders of magnitude lower as compared with the other methods (5J/mL-540kJ/mL). [2016-0305

  11. Encoded Silicon-Chip-Based Platform for Combinatorial Synthesis and Screening.

    Science.gov (United States)

    Vastl, Julian; Wang, Tina; Trinh, Thi B; Spiegel, David A

    2017-04-10

    Solid-supported chemical libraries have proven useful for the rapid and cost-effective discovery of bioactive compounds. However, traditional on-bead screening involves time-intensive chemical characterization of hit compounds and high false positive rates. Herein, we report a new platform for encoded chemical synthesis and solid-supported screening using p-Chips, microsized silicon microtransponders capable of storing and emitting unique numerical identifiers (IDs). By encoding the structures of library members using p-Chip IDs, we can track compound identities throughout both split-and-pool synthesis and protein binding assays without destructive cleavage. Thanks to the numerical IDs, our p-Chip platform can provide binding constants for library members simply by stripping and reprobing with different protein concentrations, unlike traditional on-bead assays. To showcase these features, we synthesized a library of 108 hemagglutinin (HA) peptide variants using split-and-pool approach, and measured EC50s for each variant directly on p-Chips. On-chip EC50s obtained from these studies showed excellent correlation (80%) with those obtained using traditional ELISA methods. Our screen also yielded a false positive rate of 14%, markedly superior to that reported for conventional bead-based binding studies (66-96%).1-9 On the basis of these results, we believe the p-Chip platform has the potential to improve the effectiveness of solid-supported high-throughput screening by a significant margin.

  12. Modification and characterization of an aptamer-based surface plasmon resonance sensor chip

    Directory of Open Access Journals (Sweden)

    Tan Junpeng

    2017-01-01

    Full Text Available Recently, aptamer-based surface plasmon resonance (SPR sensors have become increasingly popular due to their high specificity, high sensitivity, real-time detection capabilities, and label-free features. The core component of an aptamer-based SPR sensor is a chip. This paper presents the modification steps and the characterization results of a sensor chip for the construction of a 2, 4, 6-trinitrotoluene-targeted, aptamer-based, SPR sensor. After cleaning the aptamer-based SPR sensor chip, polyethylene glycol (PEG with functional thiol groups at one end was added to the chip surface by Au-S covalent bonds to form a self-assembled film. Then, the carboxyl groups at the other end of PEG and the carboxyl groups of trinitrophenyl-glycine (TNP-Gly were activated and connected via ethylenediamine (EDA. This effectively completed the chip’s modification. During the modification process, relevant experimental conditions were optimized. The chip’s surface elements, as well as their chemical states, were characterized by X-ray photoelectron spectroscopy (XPS. The results, outlined in the following study, demonstrate that this modification of an aptamer-based SPR sensor chip adhered to normative expectations. Thus, the modification process proposed here establishes an important foundation for subsequent study of TNT detection.

  13. High Atom Number in Microsized Atom Traps

    Science.gov (United States)

    2015-12-14

    Final Performance Report on ONR Grant N00014-12-1-0608 High atom number in microsized atom traps for the period 15 May 2012 through 14 September...TYPE Final Technical Report 3. DATES COVERED (From - To) 05/15/2012-09/14/2012 4. TITLE AND SUBTITLE High atom number in microsized atom traps...forces for implementing a small-footprint, large-number atom -chip instrument. Bichromatic forces rely on absorption and stimulated emission to produce

  14. Parallel-plate lab-on-a-chip based on digital microfluidics for on-chip electrochemical analysis

    Science.gov (United States)

    Yu, Yuhua; Chen, Jianfeng; Zhou, Jia

    2014-01-01

    This paper describes an electrowetting on dielectric (EWOD) digital microfluidic-based lab-on-a-chip (LOC) integrated with on-chip electrochemical microsensor by IC compatible fabrication process, and its application for the entire online biosensing process capable of fully automatic analysis for ferrocenemethanol (FcM) and dopamine (DA). In this work, we made full use of the parallel-plate structure of the EWOD digital microfluidic device to fabricate the microfluidic module on the bottom plate and the three-microelectrode-system-integrated electrochemical cell together with patterned ground electrode on the top plate. The proposed LOC possesses the multifunction of: (1) creating, merging and transporting of microliter-level sample droplets, (2) online biosensing, and (3) droplets recycling. The three-electrode-integrated microsensor not only reveals a sensitive electrochemical detection for FcM in a wide concentration range (10 µM-1.0 mM), but also shows good stability, selectivity and reproducibility for surface-controlled detection of DA. The calibration of DA was linear for concentration from 1.0 to 50.0 µM with a high sensitivity of 2145 nA µM-1 cm-2 (R2 = 0.9933) and estimated detection limit of 0.42 µM (signal/noise ratio of 3). This work shows the promise of state-of-the-art digital microfluidic biosensors for fully automatic online bioanalysis in a future LOC to perform on-chip biomedical protocols in vitro diagnostic assays.

  15. Chip-Scale Bioassays Based on Surface-Enhanced Raman Scattering: Fundamentals and Applications

    Energy Technology Data Exchange (ETDEWEB)

    Park, Hye-Young [Iowa State Univ., Ames, IA (United States)

    2005-01-01

    This work explores the development and application of chip-scale bioassays based on surface-enhanced Raman scattering (SERS) for high throughput and high sensitivity analysis of biomolecules. The size effect of gold nanoparticles on the intensity of SERS is first presented. A sandwich immunoassay was performed using Raman-labeled immunogold nanoparticles with various sizes. The SERS responses were correlated to particle densities, which were obtained by atomic force microscopy (AFM). The response of individual particles was also investigated using Raman-microscope and an array of gold islands on a silicon substrate. The location and the size of individual particles were mapped using AFM. The next study describes a low-level detection of Escherichia coli 0157:H7 and simulants of biological warfare agents in a sandwich immunoassay format using SERS labels, which have been termed Extrinsic Raman labels (ERLs). A new ERL scheme based on a mixed monolayer is also introduced. The mixed monolayer ERLs were created by covering the gold nanoparticles with a mixture of two thiolates, one thiolate for covalently binding antibody to the particle and the other thiolate for producing a strong Raman signal. An assay platform based on mixed self-assembled monolayers (SAMs) on gold is then presented. The mixed SAMs were prepared from dithiobis(succinimidyl undecanoate) (DSU) to covalently bind antibodies on gold substrate and oligo(ethylene glycol)-terminated thiol to prevent nonspecific adsorption of antibodies. After the mixed SAMs surfaces, formed from various mole fraction of DSU were incubated with antibodies, AFM was used to image individual antibodies on the surface. The final study presents a collaborative work on the single molecule adsorption of YOYO-I labeled {lambda}-DNA at compositionally patterned SAMs using total internal reflection fluorescence microscopy. The role of solution pH, {lambda}-DNA concentration, and domain size was investigated. This work also revealed

  16. Atomic physics and quantum optics using superconducting circuits.

    Science.gov (United States)

    You, J Q; Nori, Franco

    2011-06-29

    Superconducting circuits based on Josephson junctions exhibit macroscopic quantum coherence and can behave like artificial atoms. Recent technological advances have made it possible to implement atomic-physics and quantum-optics experiments on a chip using these artificial atoms. This Review presents a brief overview of the progress achieved so far in this rapidly advancing field. We not only discuss phenomena analogous to those in atomic physics and quantum optics with natural atoms, but also highlight those not occurring in natural atoms. In addition, we summarize several prospective directions in this emerging interdisciplinary field.

  17. 76 FR 26283 - Blue Chip Energy LLC; Supplemental Notice That Initial Market-Based Rate Filing Includes Request...

    Science.gov (United States)

    2011-05-06

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF ENERGY Federal Energy Regulatory Commission Blue Chip Energy LLC; Supplemental Notice That Initial Market- Based Rate...-referenced proceeding of Blue Chip Energy LLC's application for market-based rate authority, with an...

  18. On-chip Mode Multiplexer Based on a Single Grating Coupler

    DEFF Research Database (Denmark)

    Ding, Yunhong; Ou, Haiyan; Xu, Jing

    2012-01-01

    A two-mode multiplexer based on a single grating coupler is proposed and demonstrated on a silicon chip. The LP01 and LP11 modes of a few-mode fiber are excited from TE0 and TE1 silicon waveguide modes.......A two-mode multiplexer based on a single grating coupler is proposed and demonstrated on a silicon chip. The LP01 and LP11 modes of a few-mode fiber are excited from TE0 and TE1 silicon waveguide modes....

  19. Electrochemical microfluidic chip based on molecular imprinting technique applied for therapeutic drug monitoring.

    Science.gov (United States)

    Liu, Jiang; Zhang, Yu; Jiang, Min; Tian, Liping; Sun, Shiguo; Zhao, Na; Zhao, Feilang; Li, Yingchun

    2017-05-15

    In this work, a novel electrochemical detection platform was established by integrating molecularly imprinting technique with microfluidic chip and applied for trace measurement of three therapeutic drugs. The chip foundation is acrylic panel with designed grooves. In the detection cell of the chip, a Pt wire is used as the counter electrode and reference electrode, and a Au-Ag alloy microwire (NPAMW) with 3D nanoporous surface modified with electro-polymerized molecularly imprinted polymer (MIP) film as the working electrode. Detailed characterization of the chip and the working electrode was performed, and the properties were explored by cyclic voltammetry and electrochemical impedance spectroscopy. Two methods, respectively based on electrochemical catalysis and MIP/gate effect were employed for detecting warfarin sodium by using the prepared chip. The linearity of electrochemical catalysis method was in the range of 5×10(-6)-4×10(-4)M, which fails to meet clinical testing demand. By contrast, the linearity of gate effect was 2×10(-11)-4×10(-9)M with remarkably low detection limit of 8×10(-12)M (S/N=3), which is able to satisfy clinical assay. Then the system was applied for 24-h monitoring of drug concentration in plasma after administration of warfarin sodium in rabbit, and the corresponding pharmacokinetic parameters were obtained. In addition, the microfluidic chip was successfully adopted to analyze cyclophosphamide and carbamazepine, implying its good versatile ability. It is expected that this novel electrochemical microfluidic chip can act as a promising format for point-of-care testing via monitoring different analytes sensitively and conveniently. Copyright © 2017 Elsevier B.V. All rights reserved.

  20. On-chip temperature-based digital signal processing for customized wireless microcontroller

    Science.gov (United States)

    Farhah Razanah Faezal, Siti; Isa, Mohd Nazrin Md; Harun, Azizi; Nizam Mohyar, Shaiful; Bahari Jambek, Asral

    2017-11-01

    Increases in die size and power density inside system-on-chip (SoC) design have brought thermal issue inside the system. Uneven heat-up and increasing in temperature offset on-chip has become a major factor that can limits the system performance. This paper presents the design and simulation of a temperature-based digital signal processing for modern system-on-chip design using the Verilog HDL. This design yields continuous monitoring of temperature and reacts to specified conditions. The simulation of the system has been done on Altera Quartus Software v. 14. With system above, microcontroller can achieve nominal power dissipation and operation is within the temperature range due to the incorporate of an interrupt-based system.

  1. An all-atom structure-based potential for proteins: bridging minimal models with all-atom empirical forcefields.

    Science.gov (United States)

    Whitford, Paul C; Noel, Jeffrey K; Gosavi, Shachi; Schug, Alexander; Sanbonmatsu, Kevin Y; Onuchic, José N

    2009-05-01

    Protein dynamics take place on many time and length scales. Coarse-grained structure-based (Go) models utilize the funneled energy landscape theory of protein folding to provide an understanding of both long time and long length scale dynamics. All-atom empirical forcefields with explicit solvent can elucidate our understanding of short time dynamics with high energetic and structural resolution. Thus, structure-based models with atomic details included can be used to bridge our understanding between these two approaches. We report on the robustness of folding mechanisms in one such all-atom model. Results for the B domain of Protein A, the SH3 domain of C-Src Kinase, and Chymotrypsin Inhibitor 2 are reported. The interplay between side chain packing and backbone folding is explored. We also compare this model to a C(alpha) structure-based model and an all-atom empirical forcefield. Key findings include: (1) backbone collapse is accompanied by partial side chain packing in a cooperative transition and residual side chain packing occurs gradually with decreasing temperature, (2) folding mechanisms are robust to variations of the energetic parameters, (3) protein folding free-energy barriers can be manipulated through parametric modifications, (4) the global folding mechanisms in a C(alpha) model and the all-atom model agree, although differences can be attributed to energetic heterogeneity in the all-atom model, and (5) proline residues have significant effects on folding mechanisms, independent of isomerization effects. Because this structure-based model has atomic resolution, this work lays the foundation for future studies to probe the contributions of specific energetic factors on protein folding and function.

  2. Fiber‐free coupling between bulk laser beams and on‐chip polymer‐based multimode waveguides

    DEFF Research Database (Denmark)

    Jensen, Thomas Glasdam; Nielsen, Lars Bue; Kutter, Jörg Peter

    2011-01-01

    In this paper, we demonstrate the design of a virtually alignment‐free optical setup for use with microfluidic applications involving a layered glass/SU‐8/PDMS (polydimethylsiloxane) chip. We show how inexpensive external lenses combined with carefully designed on‐chip lenses can be used to couple...... light from a bulk beam to on‐chip waveguides and back into a bulk beam again. Using this setup, as much as 20% of the light coming from the source can be retrieved after passing through the on‐chip waveguides. The proposed setup is based on a pin‐aided alignment system that makes it possible to change...

  3. Machine Learning Based Localization and Classification with Atomic Magnetometers

    Science.gov (United States)

    Deans, Cameron; Griffin, Lewis D.; Marmugi, Luca; Renzoni, Ferruccio

    2018-01-01

    We demonstrate identification of position, material, orientation, and shape of objects imaged by a Rb 85 atomic magnetometer performing electromagnetic induction imaging supported by machine learning. Machine learning maximizes the information extracted from the images created by the magnetometer, demonstrating the use of hidden data. Localization 2.6 times better than the spatial resolution of the imaging system and successful classification up to 97% are obtained. This circumvents the need of solving the inverse problem and demonstrates the extension of machine learning to diffusive systems, such as low-frequency electrodynamics in media. Automated collection of task-relevant information from quantum-based electromagnetic imaging will have a relevant impact from biomedicine to security.

  4. VALD-2: Progress of the Vienna Atomic Line Data Base

    Science.gov (United States)

    Kupka, F.; Piskunov, N.; Ryabchikova, T. A.; Stempels, H. C.; Weiss, W. W.

    1999-07-01

    We describe the updated version of the Vienna Atomic Line Data Base (VALD, \\cite[Piskunov et al. 1995)]{pis95} which represents a considerable improvement over the first installation from 1994. The original line lists have been complemented with critically evaluated data obtained from experimental measurements and theoretical calculations which are necessary for computing state-of-the-art line opacities in stellar atmospheres, as well as for synthesizing spectra for high precision analyses. In this paper, we present new and improved data sets for neutral species and ions of Si, P, Sc, Ti, V, Cr, Mn, Fe, Co, Ni, Cu, Zn, Y, Zr, Ru, Xe, La, Ce, Pr, Nd, Sm, Eu, Gd, Dy, Ho, Er, Tm, Yb, Lu, Re, Pt, Au, Hg, and Pb. For some species data are available in VALD for the first time. We explain our choice of quality rankings by reviewing the literature for the new data and by comparison with source lists included into VALD. For some cases, we produced new line data by weighted averaging of data from different sources with individual error estimates in order to increase the reliability of VALD line lists. Software modifications allow remote users of VALD to specify individual extraction parameters as an alternative to the default settings of the VALD team and to have direct control over the quality ranking of line data. A World-Wide-Web interface is described which provides easy access to all new features. To simplify proper crediting of all authors of atomic data, VALD now includes a compilation of all publications used in each type of reply. Finally, we briefly discuss the future roadmap of VALD developments, including the incorporation of molecular transitions and integration with external data bases. http://www.astro.univie.ac.at/~vald http://www.astro.uu.se/~vald

  5. On-Chip Power-Combining for High-Power Schottky Diode-Based Frequency Multipliers

    Science.gov (United States)

    Chattopadhyay, Goutam; Mehdi, Imran; Schlecht, Erich T.; Lee, Choonsup; Siles, Jose V.; Maestrini, Alain E.; Thomas, Bertrand; Jung, Cecile D.

    2013-01-01

    A 1.6-THz power-combined Schottky frequency tripler was designed to handle approximately 30 mW input power. The design of Schottky-based triplers at this frequency range is mainly constrained by the shrinkage of the waveguide dimensions with frequency and the minimum diode mesa sizes, which limits the maximum number of diodes that can be placed on the chip to no more than two. Hence, multiple-chip power-combined schemes become necessary to increase the power-handling capabilities of high-frequency multipliers. The design presented here overcomes difficulties by performing the power-combining directly on-chip. Four E-probes are located at a single input waveguide in order to equally pump four multiplying structures (featuring two diodes each). The produced output power is then recombined at the output using the same concept.

  6. A PDMS-Based Microfluidic Hanging Drop Chip for Embryoid Body Formation

    Directory of Open Access Journals (Sweden)

    Huei-Wen Wu

    2016-07-01

    Full Text Available The conventional hanging drop technique is the most widely used method for embryoid body (EB formation. However, this method is labor intensive and limited by the difficulty in exchanging the medium. Here, we report a microfluidic chip-based approach for high-throughput formation of EBs. The device consists of microfluidic channels with 6 × 12 opening wells in PDMS supported by a glass substrate. The PDMS channels were fabricated by replicating polydimethyl-siloxane (PDMS from SU-8 mold. The droplet formation in the chip was tested with different hydrostatic pressures to obtain optimal operation pressures for the wells with 1000 μm diameter openings. The droplets formed at the opening wells were used to culture mouse embryonic stem cells which could subsequently developed into EBs in the hanging droplets. This device also allows for medium exchange of the hanging droplets making it possible to perform immunochemistry staining and characterize EBs on chip.

  7. Single-chip computers with microelectromechanical systems-based magnetic memory (invited)

    Science.gov (United States)

    Carley, L. Richard; Bain, James A.; Fedder, Gary K.; Greve, David W.; Guillou, David F.; Lu, Michael S. C.; Mukherjee, Tamal; Santhanam, Suresh; Abelmann, Leon; Min, Seungook

    2000-05-01

    This article describes an approach for implementing a complete computer system (CPU, RAM, I/O, and nonvolatile mass memory) on a single integrated-circuit substrate (a chip)—hence, the name "single-chip computer." The approach presented combines advances in the field of microelectromechanical systems (MEMS) and micromagnetics with traditional low-cost very-large-scale integrated circuit style parallel lithographic manufacturing. The primary barrier to the creation of a computer on a chip is the incorporation of a high-capacity [many gigabytes (GB)] re-writable nonvolatile memory (in today's terminology, a disk drive) into an integrated circuit (IC) manufacturing process. This article presents the following design example: a MEMS-based magnetic memory that can store over 2 GB of data in 2 cm2 of die area and whose fabrication is compatible with a standard IC manufacturing process.

  8. Chip, Chip, Hooray!

    Science.gov (United States)

    Kelly, Susan

    2001-01-01

    Presents a science laboratory using different brands of potato chips in which students test their oiliness, size, thickness, saltiness, quality, and cost, then analyze the results to determine the best chip. Gives a brief history of potato chips. (YDS)

  9. Integrated Surface-enhanced Raman Spectroscopy chip based on liquid core waveguide

    CERN Document Server

    Lai, Chunhong; Chen, Li; Li, Junhui; Liu, Qinghao; Xu, Yi

    2015-01-01

    We propose an integrated surface enhanced Raman scattering (SERS) chip based on liquid-core waveguide with total reflection, through which the depression of leaky mode enable a long propagating distance. An Raman enhancement factor for rhodamine 6G of 2.5*105 is obtained, and a excellent repeatability is shown. The peaks in the SERS spectrum of DNA of silkworm clearly illustrate the information of the molecule structure. The integration of the SERS substrate, micro-fluid, and liquid-core waveguide make such a SERS chip attractive for biochemical detection with high performance.

  10. Integrated optical displacement sensor based on asymmetric Mach-Zehnder interferometer chip

    Science.gov (United States)

    Zhao, Ning; Qian, Guang; Fu, Xing-Chang; Zhang, Li-Jiang; Hu, Wei; Li, Ruo-Zhou; Zhang, Tong

    2017-02-01

    Displacement sensor is one of the most important measuring instruments in many automated systems. We demonstrated an integrated optical displacement sensor based on an asymmetric Mach-Zehnder interferometer chip on a flexible substrate. The sensing chip was made of polymer materials and fabricated by lithography and lift-off techniques. Measured results show that the device has a loss of less than 5 dB and a potential sensitivity of about 0.105 rad/μm with quite a large space for promotion. The sensor has advantages of antielectromagnetic interference, high reliability and stability, simple preparing process, and low cost; it will occupy an important place in displacement sensors.

  11. Experiment-Based Computational Investigation of Thermomechanical Stresses in Flip Chip BGA Using the ATC4.2 Test Vehicle

    Energy Technology Data Exchange (ETDEWEB)

    Burchett, Steven N.; Nguyen, Luu; Peterson, David W.; Sweet, James N.

    1999-08-02

    Stress measurement test chips were flip chip assembled to organic BGA substrates containing micro-vias and epoxy build-up interconnect layers. Mechanical degradation observed during temperature cycling was correlated to a damage theory developed based on 3D finite element method analysis. Degradation included die cracking, edge delamination and radial fillet cracking.

  12. MEMS-based wavelength and orbital angular momentum demultiplexer for on-chip applications

    DEFF Research Database (Denmark)

    Lyubopytov, Vladimir; Porfirev, Alexey P.; Gurbatov, Stanislav O.

    2017-01-01

    Summary form only given. We demonstrate a new tunable MEMS-based WDM&OAM Fabry-Pérot filter for simultaneous wavelength (WDM) and Orbital Angular Momentum (OAM) (de)multiplexing. The WDM&OAM filter is suitable for dense on-chip integration and dedicated for the next generation of optical...

  13. Photonic chip based 1.28 Tbaud transmitter optimization and receiver OTDM demultiplexing

    DEFF Research Database (Denmark)

    Vo, T.D.; Hu, Hao; Galili, Michael

    2010-01-01

    We propose chip-based Tbaud processing for all-optical performance monitoring, switching and demultiplexing. We demonstrate the first transmitter optimization and receiver-end demultiplexing of 1.28 Tbit/s OOK signals. Both exploited Kerr nonlinearity in dispersion-engineered As$_2$S$_3$ planar...

  14. A chip-based silicon nitride platform for mid-infrared nonlinear photonics

    OpenAIRE

    Herkommer, Clemens; Guo, Hairun; Billat, Adrien; Grassani, Davide; Martin PFEIFFER; Zervas, Michael; Brès, Camille-Sophie; Kippenberg, Tobias J.

    2017-01-01

    We developed a chip-based silicon nitride platform with thick waveguides (> 2 mm) that overcomes the usual fabrication limitation. We demonstrate both microresonator frequency comb generation at 2:5 mm and supercontinuum generation extending beyond 4:0 mm in this platform.

  15. Topas Based Lab-on-a-chip Microsystems Fabricated by Thermal Nanoimprint Lithography

    DEFF Research Database (Denmark)

    Olsen, Brian Bilenberg; Hansen, Michael Søren; Özkapici, V.

    2005-01-01

    We, present a one-step technology for fabrication of Topas-based lab-on-a-chip (LOC) microsysterris by the use of thermal nanoimprint lithography (NIL). The technology is demonstrated by the fabrication of two working devices: a particle separator and a LOC with integrated optics for absorbance...

  16. On-chip, CMOS-compatible, hardware-compressive integrated photonic beamformer based on WDM

    NARCIS (Netherlands)

    Burla, M.; Zhuang, L.; Marpaung, D.A.I.; Khan, M.R.H.; Leinse, Arne; Beeker, Willem; Hoekman, M.; Heideman, Rene; Roeloffzen, C.G.H.

    2013-01-01

    We propose and experimentally demonstrate a novel, hardware-compressive architecture for broadband and continuously tunable integrated optical true-time-delay beamformers. The architecture is based on on-chip wavelength division multiplexing (WDM) that, in conjunction with the frequency-periodic

  17. Atomic force microscopy-based characterization and design of biointerfaces

    Science.gov (United States)

    Alsteens, David; Gaub, Hermann E.; Newton, Richard; Pfreundschuh, Moritz; Gerber, Christoph; Müller, Daniel J.

    2017-03-01

    Atomic force microscopy (AFM)-based methods have matured into a powerful nanoscopic platform, enabling the characterization of a wide range of biological and synthetic biointerfaces ranging from tissues, cells, membranes, proteins, nucleic acids and functional materials. Although the unprecedented signal-to-noise ratio of AFM enables the imaging of biological interfaces from the cellular to the molecular scale, AFM-based force spectroscopy allows their mechanical, chemical, conductive or electrostatic, and biological properties to be probed. The combination of AFM-based imaging and spectroscopy structurally maps these properties and allows their 3D manipulation with molecular precision. In this Review, we survey basic and advanced AFM-related approaches and evaluate their unique advantages and limitations in imaging, sensing, parameterizing and designing biointerfaces. It is anticipated that in the next decade these AFM-related techniques will have a profound influence on the way researchers view, characterize and construct biointerfaces, thereby helping to solve and address fundamental challenges that cannot be addressed with other techniques.

  18. PDMS based microfluidic chips and their application in material synthesis

    Science.gov (United States)

    Gong, Xiuqing

    Microfluidics is a highly interdisciplinary science which is to deal with the behavior, control and manipulation of fluids that are constrained to sub-milimeter scale. It incorporates the knowledge and technique intersecting physics, chemistry, mechanics, nanoscience and biotechnology, with practical applications to the design of systems in which small volumes of fluids will be used. In this thesis, we started our research from GER fluid synthesis which then is applied to designing different functions of microfluidic devices, valve, pump, and mixer. We built a way to correlate mechanical signal with electric signal by soft matter. The mechanical devices based GER fluid had good operating stability and mechanical performance. We studied how to improve the performance of GER fluid by increasing the yield stress while avoiding the sendimentation of nanoparticles in GER suspension. The meaning of this work is to enhance the stability and mechanical strength of GER fluid when it is applyed to the microfluidc channels. We tried different oils and studied the particle size for the GER effect. The largest yield stress which amounts to 300 kPa is achievable compared to previous GER fluid with 100 kPa. Microfluidic reactor, directing the flow of microliter volumes along microscale channels, offers the advantages of precise control of reagent loading, fast mixing and an enhanced reaction rate, cessation of the reaction at specific stages, and more. Basically, there are two microfluidic flow regimes, continuous flow and segmented flow (suspended droplets, channel-spanning slug, and wall-wetting films). Both flow regimes offer chemical reaction applications, e.g., continuous flow formation of polymer nanospheres and inorganic nanoparticles, size- and shape-control synthesis by segmented flow, and precipitate-forming reactions in droplets, wherein the segmented flow has gained more popularity in that area. The compartmentalization of segmented flow offers advantages to chemical

  19. Paper-Based Digital Microfluidic Chip for Multiple Electrochemical Assay Operated by a Wireless Portable Control System

    DEFF Research Database (Denmark)

    Ruecha, Nipapan; Lee, Jumi; Chae, Heedo

    2017-01-01

    The printing and modular fabrication of a paper-based active microfluidic lab on a chip implemented with electrochemical sensors (ECSs) is developed and integrated on a portable electrical control system. The electrodes of a chip plate for active electrowetting actuation of digital drops and an ECS...... designed portable power supply and wireless control system, the active paper-based chip platform can be utilized as an advanced point-of-care device for multiple assays in digital microfluidics....... modules are assembled modularly on an open chip plate, forming various novel hybridized open–closed chip formats. By varying the coupled or decoupled sensor modules, excellent detection of three diagnostic biological molecules is demonstrated (glucose, dopamine, and uric acid in human serum). With a newly...

  20. Simulation and experimental validation of a SU-8 based PCR thermocycler chip with integrated heaters and temperature sensor

    DEFF Research Database (Denmark)

    El-Ali, Jamil; Perch-Nielsen, Ivan R.; Poulsen, Claus Riber

    2004-01-01

    C/s, respectively, the performance of the chip is comparable with the best silicon micromachined PCR chips presented in the literature. The SU-8 chamber surface was found to be PCR compatible by amplification of yeast gene ribosomal protein S3 and Campylobacter gene cadF. The PCR compatibility of the chamber......We present a SU-8 based polymerase chain reaction (PCR) chip with integrated platinum thin film heaters and temperature sensor. The device is fabricated in SU-8 on a glass substrate. The use of SU-8 provides a simple microfabrication process for the PCR chamber, controllable surface properties...... and can allow on chip integration to other SU-8 based functional elements. Finite element modeling (FEM) and experiments show that the temperature distribution in the PCR chamber is homogeneous and that the chip is capable of fast thermal cycling. With heating and cooling rates of up to 50 and 30 degrees...

  1. Human-on-a-chip design strategies and principles for physiologically based pharmacokinetics/pharmacodynamics modeling.

    Science.gov (United States)

    Abaci, Hasan Erbil; Shuler, Michael L

    2015-04-01

    Advances in maintaining multiple human tissues on microfluidic platforms has led to a growing interest in the development of microphysiological systems for drug development studies. Determination of the proper design principles and scaling rules for body-on-a-chip systems is critical for their strategic incorporation into physiologically based pharmacokinetic (PBPK)/pharmacodynamic (PD) model-aided drug development. While the need for a functional design considering organ-organ interactions has been considered, robust design criteria and steps to build such systems have not yet been defined mathematically. In this paper, we first discuss strategies for incorporating body-on-a-chip technology into the current PBPK modeling-based drug discovery to provide a conceptual model. We propose two types of platforms that can be involved in the different stages of PBPK modeling and drug development; these are μOrgans-on-a-chip and μHuman-on-a-chip. Then we establish the design principles for both types of systems and develop parametric design equations that can be used to determine dimensions and operating conditions. In addition, we discuss the availability of the critical parameters required to satisfy the design criteria, consider possible limitations for estimating such parameter values and propose strategies to address such limitations. This paper is intended to be a useful guide to the researchers focused on the design of microphysiological platforms for PBPK/PD based drug discovery.

  2. An SOI CMOS-Based Multi-Sensor MEMS Chip for Fluidic Applications.

    Science.gov (United States)

    Mansoor, Mohtashim; Haneef, Ibraheem; Akhtar, Suhail; Rafiq, Muhammad Aftab; De Luca, Andrea; Ali, Syed Zeeshan; Udrea, Florin

    2016-11-04

    An SOI CMOS multi-sensor MEMS chip, which can simultaneously measure temperature, pressure and flow rate, has been reported. The multi-sensor chip has been designed keeping in view the requirements of researchers interested in experimental fluid dynamics. The chip contains ten thermodiodes (temperature sensors), a piezoresistive-type pressure sensor and nine hot film-based flow rate sensors fabricated within the oxide layer of the SOI wafers. The silicon dioxide layers with embedded sensors are relieved from the substrate as membranes with the help of a single DRIE step after chip fabrication from a commercial CMOS foundry. Very dense sensor packing per unit area of the chip has been enabled by using technologies/processes like SOI, CMOS and DRIE. Independent apparatuses were used for the characterization of each sensor. With a drive current of 10 µA-0.1 µA, the thermodiodes exhibited sensitivities of 1.41 mV/°C-1.79 mV/°C in the range 20-300 °C. The sensitivity of the pressure sensor was 0.0686 mV/(Vexcit kPa) with a non-linearity of 0.25% between 0 and 69 kPa above ambient pressure. Packaged in a micro-channel, the flow rate sensor has a linearized sensitivity of 17.3 mV/(L/min)(-0.1) in the tested range of 0-4.7 L/min. The multi-sensor chip can be used for simultaneous measurement of fluid pressure, temperature and flow rate in fluidic experiments and aerospace/automotive/biomedical/process industries.

  3. Compact atomic clock prototype based on coherent population trapping

    Directory of Open Access Journals (Sweden)

    Danet Jean-Marie

    2014-01-01

    Full Text Available Toward the next generations of compact atomic clocks, clocks based on coherent population trapping (CPT offer a very interesting alternative. Thanks to CPT, a quantum interfering process, this technology has made a decisive step in the miniaturization direction. Fractional frequency stability of 1.5x10-10 at 1 s has been demonstrated in commercial devices of a few cm3. The laboratory prototype presented here intends to explore what could be the ultimate stability of a CPT based device. To do so, an original double-Λ optical scheme and a pulsed interrogation have been implemented in order to get a good compromise between contrast and linewidth. A study of two main sources of noise, the relative intensity and the local oscillator (LO noise, has been performed. By designing simple solutions, it led to a new fractional frequency limitation lower than 4x10-13 at 1 s integration. Such a performance proves that such a technology could rival with classical ones as double resonance clocks.

  4. Atomic Structures of Molecules Based on Additivity of Atomic and/or Ionic Radii

    OpenAIRE

    Raji Heyrovska; Sara Narayan

    2009-01-01

    The authors have shown in recent years that interatomic and interionic distances are sums of the radii of the adjacent atoms and/or ions. Many examples will be provided and it will be shown how the experimental bond lengths agree with the radii sums. The examples include inorganic compounds like alkali halides, metal hydrides, graphene, etc., organic like aliphatic and aromatic compounds and biochemical like nucleic acids, amino acids, caffeine-related compounds and vitamins.

  5. Wood chip moisture on-line measurement system based on the combination of the different methods

    Energy Technology Data Exchange (ETDEWEB)

    Jaervinen, T. (VTT Technical Research Centre of Finland, Jyvaeskylae (Finland)); Teppola, P.; Siikanen, S. (VTT Technical Research Centreof Finland, Kuopio (Finland)); Malinen, J.; Hietala, E. (VTT Technical Research Centre of Finland, Oulu (Finland)); Tiitta, M.; Tomppo, L. (Univ. of Kuopio, Dept. of Physics (Finland)), email: markku.tiitta@uku.fi

    2009-07-01

    The aim of the project is to develop wood chip moisture on-line measurement system based on the combination of different methods based on use of nir-, impedance- and radiometric devices. All the measurements were installed in PDU-scale conveyor facility, which can be used for development and testing fuel and bulk material quality and property measurement technology and devices. The system enables to achieve accurate reference moisture content data within sufficient wide range of moisture content variation in full-scale. The usability and accuracy of the separate measurement methods were studied by testing in variable conditions. As a result, the best combination of different methods for each purpose is proposed. The actual system will be implemented in a separate new project under preparation. Good usability and wide range of applicability is prerequisite for the combination system to be used in variable ambient conditions for different types of wood chip like chips for pulping and logging residue chips and even to other biomass materials. (orig.)

  6. Impedance-based real-time position sensor for lab-on-a-chip devices.

    Science.gov (United States)

    Brazey, B; Cottet, J; Bolopion, A; Van Lintel, H; Renaud, P; Gauthier, M

    2018-02-13

    This paper presents the theoretical and experimental development of an integrated position sensor for lab-on-a-chip devices. The interest for single cell analysis is growing. However, this requires monitoring and controlling cell displacements in real time during their journey in the chip. Due to the high number of cells that must be monitored at the same time, classical vision-based sensors are not suitable. This paper aims to present an alternative based on impedance measurement. The position of the cells is obtained from the variation of impedance measured between two electrodes. This technique presents several advantages: the sensor is integrated into the chip, the measurement electrodes are compatible with the fabrication process of actuation electrodes for dielectrophoresis, the sampling time of the sensor is high and the position of the cells can be obtained in real time. This article highlights the concept of position-sensitive impedance sensing. The design of the chip, and in particular of the electrodes, is discussed to improve the sensitivity and repeatability of the measurement. The issue of real-time detection in a noisy environment is solved by using an extended Kalman filter. As a first proof of concept, this article presents experimental validation on a 1D case to determine the longitudinal position of 8.7 μm diameter beads in a channel.

  7. Computer vision based analysis of potato chips--a tool for rapid detection of acrylamide level.

    Science.gov (United States)

    Gökmen, Vural; Senyuva, Hamide Z; Dülek, Berkan; Cetin, Enis

    2006-09-01

    In this study, analysis of digital color images of fried potato chips were combined with parallel LC-MS based analysis of acrylamide in order to develop a rapid tool for the estimation of acrylamide during processing. Pixels of the fried potato image were classified into three sets based on their Euclidian distances to the representative mean values of typical bright yellow, yellowish brown, and dark brown regions using a semiautomatic segmentation algorithm. The featuring parameter extracted from the segmented image was NA2 value which was defined as the number of pixels in Set-2 divided by the total number of pixels of the entire fried potato image. Using training images of potato chips, it was shown that there was a strong linear correlation (r = 0.989) between acrylamide level and NA2 value. Images of a number of test samples were analyzed to predict their acrylamide level by means of this correlation data. The results confirmed that computer vision system described here provided explicit and meaningful description from the viewpoint of inspection and evaluation purpose for potato chips. Assuming a provisional threshold limit of 1000 ng/g for acrylamide, test samples could be successfully inspected with only one failure out of 60 potato chips.

  8. Droplet-based Biosensing for Lab-on-a-Chip, Open Microfluidics Platforms

    Directory of Open Access Journals (Sweden)

    Piyush Dak

    2016-04-01

    Full Text Available Low cost, portable sensors can transform health care by bringing easily available diagnostic devices to low and middle income population, particularly in developing countries. Sample preparation, analyte handling and labeling are primary cost concerns for traditional lab-based diagnostic systems. Lab-on-a-chip (LoC platforms based on droplet-based microfluidics promise to integrate and automate these complex and expensive laboratory procedures onto a single chip; the cost will be further reduced if label-free biosensors could be integrated onto the LoC platforms. Here, we review some recent developments of label-free, droplet-based biosensors, compatible with “open” digital microfluidic systems. These low-cost droplet-based biosensors overcome some of the fundamental limitations of the classical sensors, enabling timely diagnosis. We identify the key challenges that must be addressed to make these sensors commercially viable and summarize a number of promising research directions.

  9. Droplet-based Biosensing for Lab-on-a-Chip, Open Microfluidics Platforms.

    Science.gov (United States)

    Dak, Piyush; Ebrahimi, Aida; Swaminathan, Vikhram; Duarte-Guevara, Carlos; Bashir, Rashid; Alam, Muhammad A

    2016-04-14

    Low cost, portable sensors can transform health care by bringing easily available diagnostic devices to low and middle income population, particularly in developing countries. Sample preparation, analyte handling and labeling are primary cost concerns for traditional lab-based diagnostic systems. Lab-on-a-chip (LoC) platforms based on droplet-based microfluidics promise to integrate and automate these complex and expensive laboratory procedures onto a single chip; the cost will be further reduced if label-free biosensors could be integrated onto the LoC platforms. Here, we review some recent developments of label-free, droplet-based biosensors, compatible with "open" digital microfluidic systems. These low-cost droplet-based biosensors overcome some of the fundamental limitations of the classical sensors, enabling timely diagnosis. We identify the key challenges that must be addressed to make these sensors commercially viable and summarize a number of promising research directions.

  10. Atomic force microscopy-based shape analysis of heart mitochondria.

    Science.gov (United States)

    Lee, Gi-Ja; Park, Hun-Kuk

    2015-01-01

    Atomic force microscopy (AFM) has become an important medical and biological tool for the noninvasive imaging of cells and biomaterials in medical, biological, and biophysical research. The major advantages of AFM over conventional optical and electron microscopes for bio-imaging include the facts that no special coating is required and that imaging can be done in all environments-air, vacuum, or aqueous conditions. In addition, it can also precisely determine pico-nano Newton force interactions between the probe tip and the sample surface from force-distance curve measurements.It is widely known that mitochondrial swelling is one of the most important indicators of the opening of the mitochondrial permeability transition (MPT) pore. As mitochondrial swelling is an ultrastructural change, quantitative analysis of this change requires high-resolution microscopic methods such as AFM. Here, we describe the use of AFM-based shape analysis for the characterization of nanostructural changes in heart mitochondria resulting from myocardial ischemia-reperfusion injury.

  11. Optical dipole mirror for cold atoms based on a metallic diffraction grating

    DEFF Research Database (Denmark)

    Kawalec, Tomasz; Bartoszek-Bober, Dobroslawa; Panas, Roman

    We report on the realization of a plasmonic dipole mirror for cold atoms based on a metallic grating coupler. A cloud of atoms is reflected by the repulsive potential generated by surface plasmon polaritons (SPPs) excited on a reflection gold grating by a 780 nm laser beam. Experimentally...... and numerically determined mirror efficiencies are close to 100%. The intensity of SPPs above a real grating coupler and the atomic trajectories, as well as the momentum dispersion of the atom cloud being reflected, are computed. A suggestion is given as to how the plasmonic mirror might serve as an optical atom...

  12. Optical dipole mirror for cold atoms based on a metallic diffraction grating

    DEFF Research Database (Denmark)

    Kawalec, Tomasz; Bartoszek-Bober, Dobroslawa; Panas, Roman

    2014-01-01

    We report on the realization of a plasmonic dipole mirror for cold atoms based on a metallic grating coupler. A cloud of atoms is reflected by the repulsive potential generated by surface plasmon polaritons (SPPs) excited on a reflection gold grating by a 780 nm laser beam. Experimentally...... and numerically determined mirror efficiencies are close to 100%. The intensity of SPPs above a real grating coupler and the atomic trajectories, as well as the momentum dispersion of the atom cloud being reflected, are computed. A suggestion is given as to how the plasmonic mirror might serve as an optical atom...

  13. Atom devices based on single dopants in silicon nanostructures

    National Research Council Canada - National Science Library

    Moraru, Daniel; Udhiarto, Arief; Anwar, Miftahul; Nowak, Roland; Jablonski, Ryszard; Hamid, Earfan; Tarido, Juli Cha; Mizuno, Takeshi; Tabe, Michiharu

    2011-01-01

    .... In this work, we review our most recent studies on key atom devices with fundamental structures of silicon-on-insulator MOSFETs, such as single-dopant transistors, preliminary memory devices, single...

  14. Microfluidics-Based Lab-on-Chip Systems in DNA-Based Biosensing: An Overview

    Directory of Open Access Journals (Sweden)

    Sabo Wada Dutse

    2011-05-01

    Full Text Available Microfluidics-based lab-on-chip (LOC systems are an active research area that is revolutionising high-throughput sequencing for the fast, sensitive and accurate detection of a variety of pathogens. LOCs also serve as portable diagnostic tools. The devices provide optimum control of nanolitre volumes of fluids and integrate various bioassay operations that allow the devices to rapidly sense pathogenic threat agents for environmental monitoring. LOC systems, such as microfluidic biochips, offer advantages compared to conventional identification procedures that are tedious, expensive and time consuming. This paper aims to provide a broad overview of the need for devices that are easy to operate, sensitive, fast, portable and sufficiently reliable to be used as complementary tools for the control of pathogenic agents that damage the environment.

  15. Multifunctional microfluidic chip for optical nanoprobe based RNA detection - application to Chronic Myeloid Leukemia.

    Science.gov (United States)

    Alves, Pedro Urbano; Vinhas, Raquel; Fernandes, Alexandra R; Birol, Semra Zuhal; Trabzon, Levent; Bernacka-Wojcik, Iwona; Igreja, Rui; Lopes, Paulo; Baptista, Pedro Viana; Águas, Hugo; Fortunato, Elvira; Martins, Rodrigo

    2018-01-10

    Many diseases have their treatment options narrowed and end up being fatal if detected during later stages. As a consequence, point-of-care devices have an increasing importance for routine screening applications in the health sector due to their portability, fast analyses and decreased cost. For that purpose, a multifunctional chip was developed and tested using gold nanoprobes to perform RNA optical detection inside a microfluidic chip without the need of molecular amplification steps. As a proof-of-concept, this device was used for the rapid detection of chronic myeloid leukemia, a hemato-oncological disease that would benefit from early stage diagnostics and screening tests. The chip passively mixed target RNA from samples, gold nanoprobes and saline solution to infer a result from their final colorimetric properties. An optical fiber network was used to evaluate its transmitted spectra inside the chip. Trials provided accurate output results within 3 min, yielding signal-to-noise ratios up to 9 dB. When compared to actual state-of-art screening techniques of chronic myeloid leukemia, these results were, at microscale, at least 10 times faster than the reported detection methods for chronic myeloid leukemia. Concerning point-of-care applications, this work paves the way for other new and more complex versions of optical based genosensors.

  16. Enhanced on-chip SERS based biomolecular detection using electrokinetically active microwells.

    Science.gov (United States)

    Huh, Yun Suk; Chung, Aram J; Cordovez, Bernardo; Erickson, David

    2009-02-07

    Here we present a novel microfluidic technique for on-chip surface enhanced Raman spectroscopy (SERS) based biomolecular detection, exploiting the use of electrokinetically active microwells. Briefly, the chip comprises of a series of microfluidic channels containing embedded microwells that, when electrically actuated, either locally attract or repulse species from solution through a combination of electrokinetic effects. We demonstrate that the approach combines the advantages of existing homogeneous (solution phase) and heterogeneous (surface phase) on-chip techniques by enabling active mixing to enhance the rate of binding between the SERS enhancers and the biomolecular targets as well as rapid concentration of the product for surface phase optical interrogation. This paper describes the chip design and fabrication procedure, experimental results illustrating the optimal conditions for our concentration and mixing processes, and a numerical analysis of the flow pattern. To demonstrate the usefulness of the device we apply it to the quantitative detection of nucleic acid sequences associated with Dengue virus serotype 2. We report a limit of detection for Dengue sequences of 30 pM and show excellent specificity against other serotypes.

  17. [Evaluation of genotyping of human papilomavirus by a new DNA liquid chip based on Luminex XMAP].

    Science.gov (United States)

    Deng, Xiao-mei; Liu, Min; Zheng, Gui-xi; Wang, Chuan-xin; Zhang, Jian; Li, Wei

    2009-12-01

    To evaluate the diagnostic value of Luminex XMAP liquid chip for HPV detection. Detect HPV DNA with the liquid chip and HC II in 264 cases, including 231 of cervical cancer and 33 of cervical scrapes. The accordance of two methods were compared and DNA sequencing was performed in conflicting samples and single (infection samples. There is an excellent agreement between the methods. The overall incidence of HPV was 82.95%, the most common genotypes were HPV 16, 52, 58, 18, 11, 31, 6, 39, 33, 56, 70. Among all the positive types, 117 were single type and 102 were multiple types, and 87.43% were high-risk HPV genotypes and 12.57% were low-risk genotypes. Based on the criteria of histology and pathology, the sensitivity, specificity, positive and negative-predictive value of HPV liquid chip and HC II for detecting all cases of CIN II, III and carcinomas were respectively 93.07%, 87.88%, 98.17%, 64.44% and 94.81%, 87.88%, 98.21%, 70.73%. The common types of HPV infection are 16, 52, 58, 18, 11, 6, 56 and 31. Multiplex HPV genotyping by Luminex XMAP liquid chip appears to be highly suitable for diagnostic screening and large-scale epidemiological studies.

  18. On-chip plasmon-induced transparency based on plasmonic coupled nanocavities

    Science.gov (United States)

    Zhu, Yu; Hu, Xiaoyong; Yang, Hong; Gong, Qihuang

    2014-01-01

    On-chip plasmon-induced transparency offers the possibility of realization of ultrahigh-speed information processing chips. Unfortunately, little experimental progress has been made to date because it is difficult to obtain on-chip plasmon-induced transparency using only a single meta-molecule in plasmonic circuits. Here, we report a simple and efficient strategy to realize on-chip plasmon-induced transparency in a nanoscale U-shaped plasmonic waveguide side-coupled nanocavity pair. High tunability in the transparency window is achieved by covering the pair with different organic polymer layers. It is possible to realize ultrafast all-optical tunability based on pump light-induced refractive index change of a graphene cover layer. Compared with previous reports, the overall feature size of the plasmonic nanostructure is reduced by more than three orders of magnitude, while ultrahigh tunability of the transparency window is maintained. This work also provides a superior platform for the study of the various physical effects and phenomena of nonlinear optics and quantum optics. PMID:24435059

  19. NI Based System for Seu Testing of Memory Chips for Avionics

    Directory of Open Access Journals (Sweden)

    Boruzdina Anna

    2016-01-01

    Full Text Available This paper presents the results of implementation of National Instrument based system for Single Event Upset testing of memory chips into neutron generator experimental facility, which used for SEU tests for avionics purposes. Basic SEU testing algorithm with error correction and constant errors detection is presented. The issues of radiation shielding of NI based system are discussed and solved. The examples of experimental results show the applicability of the presented system for SEU memory testing under neutrons influence.

  20. Debugging systems-on-chip communication-centric and abstraction-based techniques

    CERN Document Server

    Vermeulen, Bart

    2014-01-01

    This book describes an approach and supporting infrastructure to facilitate debugging the silicon implementation of a System-on-Chip (SOC), allowing its associated product to be introduced into the market more quickly.  Readers learn step-by-step the key requirements for debugging a modern, silicon SOC implementation, nine factors that complicate this debugging task, and a new debug approach that addresses these requirements and complicating factors.  The authors’ novel communication-centric, scan-based, abstraction-based, run/stop-based (CSAR) debug approach is discussed in detail, showing how it helps to meet debug requirements and address the nine, previously identified factors that complicate debugging silicon implementations of SOCs. The authors also derive the debug infrastructure requirements to support debugging of a silicon implementation of an SOC with their CSAR debug approach. This debug infrastructure consists of a generic on-chip debug architecture, a configurable automated design-for-debug ...

  1. A research on the reliability of light-emitting diode based on analyzing of chip image

    Directory of Open Access Journals (Sweden)

    Ruan Jian

    2016-01-01

    Full Text Available This paper proposes a new method for studying the reliability of high-power light-emitting diode (LED by analyzing chip images taken from a batch of LEDs which are selected to conduct the accelerated aging test lasting for 1400 hours. To exclude the disturbance of electrode in these images, an image processing algorithm based on projection is used to extract the interested section. An index called “dark point” which is related to non-radiative combination to describe the reliability of LED is proposed. The method is based on analyzing the variation trends of dark points in the extracted section of these images. The results show that the proportion of the dark point increases with aging time increasing. The lifetime of LED with higher increasing rate is shorter. Based on the increasing rate of dark point, the lifetime of the chip can be predicted in an easier way.

  2. Single-atom based coherent quantum interference device structure.

    Science.gov (United States)

    Naydenov, Borislav; Rungger, Ivan; Mantega, Mauro; Sanvito, Stefano; Boland, John J

    2015-05-13

    We describe the fabrication, operation principles, and simulation of a coherent single-atom quantum interference device (QID) structure on Si(100) controlled by the properties of single atoms. The energy and spatial distribution of the wave functions associated with the device are visualized by scanning tunneling spectroscopy and the amplitude and phase of the evanescent wave functions that couple into the quantum well states are directly measured, including the action of an electrostatic gate. Density functional theory simulations were employed to simulate the electronic structure of the device structure, which is in excellent agreement with the measurements. Simulations of device transmission demonstrate that our coherent single-atom QID can have ON-OFF ratios in excess of 10(3) with potentially minimal power dissipation.

  3. On-chip wavelength switch based on thermally tunable discrete four-wave mixing in a silicon waveguide

    DEFF Research Database (Denmark)

    Pu, Minhao; Chen, Yaohui; Hu, Hao

    2014-01-01

    An on-chip wavelength switch is proposed based on discrete four-wave mixing in a silicon waveguide. Switching operation can be realized by thermal tuning the waveguide dispersion. We also discuss optimal dimension design concerning device performances.......An on-chip wavelength switch is proposed based on discrete four-wave mixing in a silicon waveguide. Switching operation can be realized by thermal tuning the waveguide dispersion. We also discuss optimal dimension design concerning device performances....

  4. Laser wavelength metrology with color sensor chips.

    Science.gov (United States)

    Jones, Tyler B; Otterstrom, Nils; Jackson, Jarom; Archibald, James; Durfee, Dallin S

    2015-12-14

    We present a laser wavelength meter based on a commercial color sensor chip. The chip consists of an array of photodiodes with different absorptive color filters. By comparing the relative amplitudes of light on the photodiodes, the wavelength of light can be determined. In addition to absorption in the filters, etalon effects add additional spectral features which improve the precision of the device. Comparing the measurements from the device to a commercial wavelength meter and to an atomic reference, we found that the device has picometer-level precision and picometer-scale drift over a period longer than a month.

  5. On-chip magnetic bead-based DNA melting curve analysis using a magnetoresistive sensor

    DEFF Research Database (Denmark)

    Rizzi, Giovanni; Østerberg, Frederik Westergaard; Henriksen, Anders Dahl

    2014-01-01

    We present real-time measurements of DNA melting curves in a chip-based system that detects the amount of surface-bound magnetic beads using magnetoresistive magnetic field sensors. The sensors detect the difference between the amount of beads bound to the top and bottom sensor branches...... of the differential sensor geometry. The sensor surfaces are functionalized with wild type (WT) and mutant type (MT) capture probes, differing by a single base insertion (a single nucleotide polymorphism, SNP). Complementary biotinylated targets in suspension couple streptavidin magnetic beads to the sensor surface....... The beads are magnetized by the field arising from the bias current passed through the sensors. We demonstrate the first on-chip measurements of the melting of DNA hybrids upon a ramping of the temperature. This overcomes the limitation of using a single washing condition at constant temperature. Moreover...

  6. Toward new gas-analytical multisensor chips based on titanium oxide nanotube array.

    Science.gov (United States)

    Fedorov, Fedor; Vasilkov, Michail; Lashkov, Andrey; Varezhnikov, Alexey; Fuchs, Dirk; Kübel, Christian; Bruns, Michael; Sommer, Martin; Sysoev, Victor

    2017-08-29

    Reliable environmental monitoring requires cost effective but highly sensitive and selective gas sensors. While the sensitivity of the sensors is improved by reducing the characteristic dimensions of the gas-sensing material, the selectivity is often approached by combining the sensors into multisensor arrays. The development of scalable methods to manufacture such arrays based on low-dimensional structures offers new perspectives for gas sensing applications. Here we examine an approach to produce multisensor array chips based on the TiO x nanotube layers segmented by multiple Pt strip electrodes. We study the sensitivity and selectivity of the developed chip at operating temperatures up to 400 °C towards organic vapors in the ppm range. The results indicate that the titania nanotubes are a promising material platform for novel cost-effective and powerful gas-analytical multisensor units.

  7. Piezoresistive microcantilever based lab-on-a-chip system for detection of macronutrients in the soil

    Science.gov (United States)

    Patkar, Rajul S.; Ashwin, Mamta; Rao, V. Ramgopal

    2017-12-01

    Monitoring of soil nutrients is very important in precision agriculture. In this paper, we have demonstrated a micro electro mechanical system based lab-on-a-chip system for detection of various soil macronutrients which are available in ionic form K+, NO3-, and H2PO4-. These sensors are highly sensitive piezoresistive silicon microcantilevers coated with a polymer matrix containing methyltridodecylammonium nitrate ionophore/ nitrate ionophore VI for nitrate sensing, 18-crown-6 ether for potassium sensing and Tributyltin chloride for phosphate detection. A complete lab-on-a-chip system integrating a highly sensitive current excited Wheatstone's bridge based portable electronic setup along with arrays of microcantilever devices mounted on a printed circuit board with a liquid flow cell for on the site experimentation for soil test has been demonstrated.

  8. Initiating Heavy-atom Based Phasing by Multi-Dimensional Molecular Replacement

    OpenAIRE

    Pedersen, Bjørn Panyella; Gourdon, Pontus; Liu, Xiangyu; Lykkegaard Karlsen, Jesper; Nissen, Poul

    2014-01-01

    To obtain an electron-density map from a macromolecular crystal the phase problem needs to be solved, which often involves the use of heavy-atom derivative crystals and concomitant heavy-atom substructure determination. This is typically performed by dual-space methods, direct methods or Patterson-based approaches, which however may fail when only poorly diffracting derivative crystals are available. This is often the case for, for example, membrane proteins. Here, an approach for heavy-atom ...

  9. Smart Camera System-on-Chip Architecture for Real-Time Brush Based Interactive Painting Systems

    OpenAIRE

    Claesen, Luc; Vandoren, Peter; VAN LAERHOVEN, Tom; Motten, Andy; Di Fiore, Fabian; Van Reeth, Frank; Liao, Jing; Yu, Jinhui

    2012-01-01

    Interactive virtual paint systems are very useful in editing all kinds of graphics artwork. Because of the digital tracking of strokes, interactive editing operations such as save, redo, resize etc. are possible. The structure of artwork generated can be used for animation in artwork cartoons. A novel System-onChip Smart Camera architecture is presented that can be used for tracking infrared fiber based brushes as well as real brushes in real-time. A dedicated SoC hardware implementation ...

  10. Micromachined fountain pen for atomic force microscope-based nanopatterning

    NARCIS (Netherlands)

    Deladi, S.; Tas, Niels Roelof; Berenschot, Johan W.; Krijnen, Gijsbertus J.M.; de Boer, Meint J.; de Boer, J.H.; Péter, M.; Elwenspoek, Michael Curt

    2004-01-01

    We present a tool that can be used in standard atomic force microscope and that enables chemical, chemical/mechanical, or physical surface modification using continuous liquid supply. The device consists of a reservoir micromachined into the probe support that is connected to fluidic channels

  11. An atom counting and electrophilicity based QSTR approach

    Indian Academy of Sciences (India)

    Quantitative-structure-toxicity-relationship (QSTR) models are developed for predicting the toxicity (pIGC50) of 252 aliphatic compounds on Tetrahymena pyriformis. The single parameter models with a simple molecular descriptor, the number of atoms in the molecule, provide reasonable results. Better QSTR models with ...

  12. Capillary-driven surface-enhanced Raman scattering (SERS)-based microfluidic chip for abrin detection

    Science.gov (United States)

    Yang, Hao; Deng, Min; Ga, Shan; Chen, Shouhui; Kang, Lin; Wang, Junhong; Xin, Wenwen; Zhang, Tao; You, Zherong; An, Yuan; Wang, Jinglin; Cui, Daxiang

    2014-03-01

    Herein, we firstly demonstrate the design and the proof-of-concept use of a capillary-driven surface-enhanced Raman scattering (SERS)-based microfluidic chip for abrin detection. The micropillar array substrate was etched and coated with a gold film by microelectromechanical systems (MEMS) process to integrate into a lateral flow test strip. The detection of abrin solutions of various concentrations was performed by the as-prepared microfluidic chip. It was shown that the correlation between the abrin concentration and SERS signal was found to be linear within the range of 0.1 ng/mL to 1 μg/mL with a limit of detection of 0.1 ng/mL. Our microfluidic chip design enhanced the operability of SERS-based immunodiagnostic techniques, significantly reducing the complication and cost of preparation as compared to previous SERS-based works. Meanwhile, this design proved the superiority to conventional lateral flow test strips in respect of both sensitivity and quantitation and showed great potential in the diagnosis and treatment for abrin poisoning as well as on-site screening of abrin-spiked materials.

  13. Accelerometer for Space Applications Based on Light-Pulse Atom Interferometry Project

    Data.gov (United States)

    National Aeronautics and Space Administration — We propose to build a compact, high-precision single-axis accelerometer based on atom interferometry that is applicable to operation in space environments. Based on...

  14. Lab-on-chip for liquid biopsy (LoC-LB) based on dielectrophoresis.

    Science.gov (United States)

    Mathew, Bobby; Alazzam, Anas; Khashan, Saud; Abutayeh, Mohammad

    2017-03-01

    This short communication presents the proof-of-concept of a novel dielectrophoretic lab-on-chip for identifying/separating circulating tumor cells for purposes of liquid biopsy. The device consists of a polydimethylsiloxane layer, containing a microchannel, bonded on a glass substrate that holds two sets of planar interdigitated transducer electrodes. The lab-on-chip is operated at a frequency that enables dielectrophoretic force to sort cells, based on type, along the lateral direction. The operating frequency ensures attraction force toward the electrodes on cancer cells and repulsion force toward the center of the microchannel on other cells. Initial tests for demonstrating proof-of-concept have successfully identified/separated green fluorescent protein-labelled MDA-MB-231 breast cancer cells from a mixture of the same and regular blood cells suspended in low conductivity sucrose/dextrose medium. Copyright © 2016 Elsevier B.V. All rights reserved.

  15. A superhydrophobic chip based on SU-8 photoresist pillars suspended on a silicon nitride membrane

    KAUST Repository

    Marinaro, Giovanni

    2014-07-28

    We developed a new generation of superhydrophobic chips optimized for probing ultrasmall sample quantities by X-ray scattering and fluorescence techniques. The chips are based on thin Si3N4 membranes with a tailored pattern of SU-8 photoresist pillars. Indeed, aqueous solution droplets can be evaporated and concentrated at predefined positions using a non-periodic pillar pattern. We demonstrated quantitatively the deposition and aggregation of gold glyconanoparticles from the evaporation of a nanomolar droplet in a small spot by raster X-ray nanofluorescence. Further, raster nanocrystallography of biological objects such as rod-like tobacco mosaic virus nanoparticles reveals crystalline macro-domain formation composed of highly oriented nanorods. © 2014 the Partner Organisations.

  16. Extraction, amplification and detection of DNA in microfluidic chip-based assays

    KAUST Repository

    Wu, Jinbo

    2013-12-20

    This review covers three aspects of PCR-based microfluidic chip assays: sample preparation, target amplification, and product detection. We also discuss the challenges related to the miniaturization and integration of each assay and make a comparison between conventional and microfluidic schemes. In order to accomplish these essential assays without human intervention between individual steps, the micro-components for fluid manipulation become critical. We therefore summarize and discuss components such as microvalves (for fluid regulation), pumps (for fluid driving) and mixers (for blending fluids). By combining the above assays and microcomponents, DNA testing of multi-step bio-reactions in microfluidic chips may be achieved with minimal external control. The combination of assay schemes with the use of micro-components also leads to rapid methods for DNA testing via multi-step bioreactions. Contains 259 references.

  17. A novel gold nanoparticle-DNA aptamer-based plasmonic chip for rapid and sensitive detection of bacterial pathogens

    DEFF Research Database (Denmark)

    Sun, Yi; Phuoc Long, Truong; Wolff, Anders

    2016-01-01

    Gold nanoparticles (AuNPs)-based biosensors are emerging technologies for rapid detection of pathogens. However, it is very challenging to develop chip-based AuNP-biosensors for whole cells. This paper describes a novel AuNPs-DNA aptamer-based plasmonic assay which allows DNA aptamers to be detac......Gold nanoparticles (AuNPs)-based biosensors are emerging technologies for rapid detection of pathogens. However, it is very challenging to develop chip-based AuNP-biosensors for whole cells. This paper describes a novel AuNPs-DNA aptamer-based plasmonic assay which allows DNA aptamers...... to be detached from AuNPs when interacting with bacteria. The new strategy greatly increases the sensitivity and specificity of chip-based whole-cell biosensing....

  18. Wireless Charge Based Capacitance Measurement Circuits with On-Chip Spiral Inductor for Radio Frequency Identification Biosensor

    Science.gov (United States)

    Kim, Boram; Uno, Shigeyasu; Nakazato, Kazuo

    2012-04-01

    A wireless measuring system of charge based capacitance measurement (CBCM) circuit has been designed and demonstrated for biomedical applications. The radio frequency identification (RFID) chip that includes on-chip spiral inductor tag antenna, and RFID circuit, and CBCM sensor chip are fabricated within standard complementary metal oxide semiconductor (CMOS) process. The capacitance change caused by DNA detection can be converted into the voltage output using capacitance-to-voltage conversion circuit. To confirm the transmission of the capacitance, the poly-capacitor of fixed capacitance and on-chip spiral inductor tag antenna were fabricated using 1.2 µm, 2-metal, 2-poly CMOS technology. As a result of measurement, three different capacitances (34, 141, 564 fF) were detected wirelessly.

  19. Design, fabrication and characterization of drug delivery systems based on lab-on-a-chip technology.

    Science.gov (United States)

    Nguyen, Nam-Trung; Shaegh, Seyed Ali Mousavi; Kashaninejad, Navid; Phan, Dinh-Tuan

    2013-11-01

    Lab-on-a-chip technology is an emerging field evolving from the recent advances of micro- and nanotechnologies. The technology allows the integration of various components into a single microdevice. Microfluidics, the science and engineering of fluid flow in microscale, is the enabling underlying concept for lab-on-a-chip technology. The present paper reviews the design, fabrication and characterization of drug delivery systems based on this amazing technology. The systems are categorized and discussed according to the scales at which the drug is administered. Starting with the fundamentals on scaling laws of mass transfer and basic fabrication techniques, the paper reviews and discusses drug delivery devices for cellular, tissue and organism levels. At the cellular level, a concentration gradient generator integrated with a cell culture platform is the main drug delivery scheme of interest. At the tissue level, the synthesis of smart particles as drug carriers using lab-on-a-chip technology is the main focus of recent developments. At the organism level, microneedles and implantable devices with fluid-handling components are the main drug delivery systems. For drug delivery to a small organism that can fit into a microchip, devices similar to those of cellular level can be used. Copyright © 2013 Elsevier B.V. All rights reserved.

  20. Integrated confocal Raman probe combined with a free-form reflector based lab-on-chip

    Science.gov (United States)

    Liu, Qing; Barbieri, Giancarlo; Thienpont, Hugo; Ottevaere, Heidi

    2017-08-01

    Raman spectroscopy is a powerful tool for analytical measurements in many applications. Traditional Raman spectroscopic analyses require bulky equipment, considerable time of signal acquisition and manual sampling of substances under test. In this paper, we take a step from bulky and manual consuming laboratory testing towards lab-on-chip (LOC) analyses. We miniaturize the Raman spectroscopic system by combining a free-form reflector based polymer LOC with a customized Raman probe. By using the confocal detection principle, we aim to enhance the detection of the Raman signals from the substance of interest due to the suppression of the background Raman signal from the polymer of the chip. Next to the LOC we miniaturize the external optical components, surrounding the reflector embedding optofluidic chip, and assemble these in a Raman probe. We evaluate the misalignment tolerance of internal optics (LOC) and external optics (Raman probe) by non-sequential ray tracing which shows that off-axis misalignment is around ±400μm and the maximum working distance of our Raman probe is 71mm. Using this probe, the system could be implemented as a portable reader unit containing the external optics, in which a low-cost, robust and mass manufacturable microfluidic LOC containing a freeform reflector is inserted, to enable confocal Raman spectroscopy measurements.

  1. HARDWARE IMPLEMENTATION OF PIPELINE BASED ROUTER DESIGN FOR ON-CHIP NETWORK

    Directory of Open Access Journals (Sweden)

    U. Saravanakumar

    2012-12-01

    Full Text Available As the feature size is continuously decreasing and integration density is increasing, interconnections have become a dominating factor in determining the overall quality of a chip. Due to the limited scalability of system bus, it cannot meet the requirement of current System-on-Chip (SoC implementations where only a limited number of functional units can be supported. Long global wires also cause many design problems, such as routing congestion, noise coupling, and difficult timing closure. Network-on-Chip (NoC architectures have been proposed to be an alternative to solve the above problems by using a packet-based communication network. In this paper, the Circuit-Switched (CS Router was designed and analysed the various parameters such as power, timing and area. The CS router has taken more number of cycles to transfer the data from source to destination. So the pipelining concept was implemented by adding registers in the CS router architecture. The proposed architecture increases the speed of operation and reduces the critical path of the circuit. The router has been implemented using Verilog HDL. The parameters area, power and timing were calculated in 130 nm CMOS technology using Synopsys tool with nominal operating voltage of 1V and packet size is 39 bits. Finally power, area and time of these two routers have been analysed and compared.

  2. Coordination Polymer Framework Based On-Chip Micro-Supercapacitors with AC Line-Filtering Performance.

    Science.gov (United States)

    Yang, Chongqing; Schellhammer, Karl Sebastian; Ortmann, Frank; Sun, Sai; Dong, Renhao; Karakus, Melike; Mics, Zoltán; Löffler, Markus; Zhang, Fan; Zhuang, Xiaodong; Cánovas, Enrique; Cuniberti, Gianaurelio; Bonn, Mischa; Feng, Xinliang

    2017-03-27

    On-chip micro-supercapacitors (MSCs) are important Si-compatible power-source backups for miniaturized electronics. Despite their tremendous advantages, current on-chip MSCs require harsh processing conditions and typically perform like resistors when filtering ripples from alternating current (AC). Herein, we demonstrated a facile layer-by-layer method towards on-chip MSCs based on an azulene-bridged coordination polymer framework (PiCBA). Owing to the good carrier mobility (5×10-3  cm2  V-1  s-1 ) of PiCBA, the permanent dipole moment of azulene skeleton, and ultralow band gap of PiCBA, the fabricated MSCs delivered high specific capacitances of up to 34.1 F cm-3 at 50 mV s-1 and a high volumetric power density of 1323 W cm-3 . Most importantly, such MCSs exhibited AC line-filtering performance (-73° at 120 Hz) with a short resistance-capacitance constant of circa 0.83 ms. © 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

  3. VLSI design of an RSA encryption/decryption chip using systolic array based architecture

    Science.gov (United States)

    Sun, Chi-Chia; Lin, Bor-Shing; Jan, Gene Eu; Lin, Jheng-Yi

    2016-09-01

    This article presents the VLSI design of a configurable RSA public key cryptosystem supporting the 512-bit, 1024-bit and 2048-bit based on Montgomery algorithm achieving comparable clock cycles of current relevant works but with smaller die size. We use binary method for the modular exponentiation and adopt Montgomery algorithm for the modular multiplication to simplify computational complexity, which, together with the systolic array concept for electric circuit designs effectively, lower the die size. The main architecture of the chip consists of four functional blocks, namely input/output modules, registers module, arithmetic module and control module. We applied the concept of systolic array to design the RSA encryption/decryption chip by using VHDL hardware language and verified using the TSMC/CIC 0.35 m 1P4 M technology. The die area of the 2048-bit RSA chip without the DFT is 3.9 × 3.9 mm2 (4.58 × 4.58 mm2 with DFT). Its average baud rate can reach 10.84 kbps under a 100 MHz clock.

  4. Reconfigurable laser arrays with capillary fill microfluidics for chip-based flow cytometry (Conference Presentation)

    Science.gov (United States)

    Thomas, Robert

    2016-03-01

    Low cost, portable chip based flow cytometry has great potential for applications in resource poor and point of care settings. Typical approaches utilise low cost silicon or glass substrates with light emission and detection performed either off-chip using external equipment or incorporated on-chip using `pick and place' diode lasers and photo-detectors. The former approach adds cost and limits portability while the sub-micron alignment tolerances imposed by the application make the latter impractical for all but the simplest of systems. Use of an optically active semiconductor substrate, on the other hand, overcomes these limitations by allowing multiple laser/detector arrays to be formed in the substrate itself using high resolution lithographic techniques. The capacity for multiple emitters and detectors on a single chip not only enables parallel measurement for increased throughput but also allows multiple measurements to be performed on each cell as it passes through the system. Several different experiments can be performed simultaneously and throughput demand can be reduced with the facility for error checking. Furthermore, the fast switching times inherent with semiconductor lasers allows the active sections of the device to be reconfigured on a sub-microsecond time scale providing additional functionality. This is demonstrated here in a capillary fill system using pairs of laser/detectors that are operated in pulsed mode and alternated between lasing and detecting in an interleaved manner. Passing cells are alternately interrogated from opposing directions providing information that can be used to correct for differences in lateral cell position and ultimately differentiate blood cell type.

  5. Titanium nitride based hybrid plasmonic-photonic waveguides for on-chip plasmonic interconnects

    Science.gov (United States)

    Dutta, A.; Saha, S.; Kinsey, N.; Guler, U.; Shalaev, V. M.; Boltasseva, A.

    2017-02-01

    Over the past few decades, photonic technologies have emerged as a promising technology for data communications. They offer advantages such as high data bandwidths at comparable or even lower power consumption than electronics. However, photonic integrated circuits suffer from the diffraction limit of light which is a major obstacle in achieving small device footprints and densely packed on-chip interconnects. In recent years, plasmonics has emerged as a possible solution for densely packed on-chip nanophotonic circuitry. The field of plasmonics deals with oscillations of free electrons in a metal coupled to an electromagnetic field. The large wave-vector associated with these oscillations enables light to be localized in volumes much smaller than the diffraction limit. Consequently, there have been many demonstrations of plasmonic interconnects for on-chip communications, using well known metals such as gold and silver. However these materials are not CMOS compatible and hence their use is not technologically feasible. The growing need for plasmonic materials which are robust, cost-effective, and CMOS-compatible has led to the study of alternate plasmonic materials. For the visible and near infrared ranges, transition metal nitrides have been shown to be suitable metals for plasmonic applications These materials have optical properties comparable to that of gold and are CMOS-compatible, hence, they can be easily integrated into a silicon platform for on-chip applications. In this work, we demonstrate titanium nitride based plasmonic interconnects in an all-solid state geometry which can be easily integrated on a silicon platform.

  6. Fiber-to-Waveguide and 3D Chip-to-Chip Light Coupling Based on Bent Metal-Clad Waveguides

    CERN Document Server

    Lu, Zhaolin; Shi, Kaifeng

    2016-01-01

    Efficient fiber-to-waveguide light coupling has been a key issue in integrated photonics for many years. The main challenge lies in the huge mode mismatch between an optical fiber and a single mode waveguide. Herein, we present a novel fiber-to-waveguide coupler, named "L-coupler", through which the light fed from the top of a chip can bend 90{\\deg} with low reflection and is then efficiently coupled into an on-chip Si waveguide within a short propagation distance (<20{\\mu}m). The key element is a bent metal-clad waveguide with a big matched input port. According to our finite-difference time-domain (FDTD) simulation, the coupling efficiency is over 80% within a broad range of working wavelengths in the near-infrared regime for a transverse electric input Gaussian wave. The coupler is polarization-dependent, with very low coupling efficiency (6%-9%) for transverse magnetic waves. The coupler can also be used for three-dimensional (3D) chip-to-chip optical interconnection by efficiently coupling light into ...

  7. Rapid and Low-Cost CRP Measurement by Integrating a Paper-Based Microfluidic Immunoassay with Smartphone (CRP-Chip).

    Science.gov (United States)

    Dong, Meili; Wu, Jiandong; Ma, Zimin; Peretz-Soroka, Hagit; Zhang, Michael; Komenda, Paul; Tangri, Navdeep; Liu, Yong; Rigatto, Claudio; Lin, Francis

    2017-03-26

    Traditional diagnostic tests for chronic diseases are expensive and require a specialized laboratory, therefore limiting their use for point-of-care (PoC) testing. To address this gap, we developed a method for rapid and low-cost C-reactive protein (CRP) detection from blood by integrating a paper-based microfluidic immunoassay with a smartphone (CRP-Chip). We chose CRP for this initial development because it is a strong biomarker of prognosis in chronic heart and kidney disease. The microfluidic immunoassay is realized by lateral flow and gold nanoparticle-based colorimetric detection of the target protein. The test image signal is acquired and analyzed using a commercial smartphone with an attached microlens and a 3D-printed chip-phone interface. The CRP-Chip was validated for detecting CRP in blood samples from chronic kidney disease patients and healthy subjects. The linear detection range of the CRP-Chip is up to 2 μg/mL and the detection limit is 54 ng/mL. The CRP-Chip test result yields high reproducibility and is consistent with the standard ELISA kit. A single CRP-Chip can perform the test in triplicate on a single chip within 15 min for less than 50 US cents of material cost. This CRP-Chip with attractive features of low-cost, fast test speed, and integrated easy operation with smartphones has the potential to enable future clinical PoC chronic disease diagnosis and risk stratification by parallel measurements of a panel of protein biomarkers.

  8. Support for Programming Models in Network-on-Chip-based Many-core Systems

    DEFF Research Database (Denmark)

    Rasmussen, Morten Sleth

    This thesis addresses aspects of support for programming models in Network-on- Chip-based many-core architectures. The main focus is to consider architectural support for a plethora of programming models in a single system. The thesis has three main parts. The first part considers parallelization...... models to be supported by a single architecture. The architecture features a specialized network interface processor which allows extensive configurability of the memory system. Based on this architecture, a detailed implementation of the cache coherent shared memory programming model is presented...

  9. Addressing On-Chip Power Converstion and Dissipation Issues in Many-Core System-on-a-Chip Based on Conventional Silicon and Emerging Nanotechnologies

    Science.gov (United States)

    Ashenafi, Emeshaw

    Integrated circuits (ICs) are moving towards system-on-a-chip (SOC) designs. SOC allows various small and large electronic systems to be implemented in a single chip. This approach enables the miniaturization of design blocks that leads to high density transistor integration, faster response time, and lower fabrication costs. To reap the benefits of SOC and uphold the miniaturization of transistors, innovative power delivery and power dissipation management schemes are paramount. This dissertation focuses on on-chip integration of power delivery systems and managing power dissipation to increase the lifetime of energy storage elements. We explore this problem from two different angels: On-chip voltage regulators and power gating techniques. On-chip voltage regulators reduce parasitic effects, and allow faster and efficient power delivery for microprocessors. Power gating techniques, on the other hand, reduce the power loss incurred by circuit blocks during standby mode. Power dissipation (Ptotal = Pstatic and Pdynamic) in a complementary metal-oxide semiconductor (CMOS) circuit comes from two sources: static and dynamic. A quadratic dependency on the dynamic switching power and a more than linear dependency on static power as a form of gate leakage (subthreshold current) exist. To reduce dynamic power loss, the supply power should be reduced. A significant reduction in power dissipation occurs when portions of a microprocessor operate at a lower voltage level. This reduction in supply voltage is achieved via voltage regulators or converters. Voltage regulators are used to provide a stable power supply to the microprocessor. The conventional off-chip switching voltage regulator contains a passive floating inductor, which is difficult to be implemented inside the chip due to excessive power dissipation and parasitic effects. Additionally, the inductor takes a very large chip area while hampering the scaling process. These limitations make passive inductor based on-chip

  10. Accelerometer for Space Applications Based on Light-Pulse Atom Interferometry Project

    Data.gov (United States)

    National Aeronautics and Space Administration — We propose to design a compact, high-precision, single-axis accelerometer based on atom interferometry that is applicable to operation in space environments. Our...

  11. Analysis of immunoarrays using a gold grating-based dual mode surface plasmon-coupled emission (SPCE) sensor chip.

    Science.gov (United States)

    Yuk, Jong Seol; Gibson, George N; Rice, James M; Guignon, Ernest F; Lynes, Michael A

    2012-06-07

    We have developed a novel dual mode immunoassay platform that combines the advantages of real-time, label free measurement of surface plasmon resonance (SPR) and the highly directional surface plasmon-coupled emission (SPCE) using a gold grating-based sensor chip. Since only fluorophore-labeled analyte molecules that are close to the metal surface of the sensor chip will couple to the surface plasmon, SPCE detection is highly surface-specific leading to background suppression and increased sensitivity. Theoretical calculations were done to find SPR and SPCE angles for a sensor chip optimized for Alexa Fluor 647. We have confirmed the SPR and SPCE responses on the dual mode sensor chip using Alexa Fluor 647 labeled anti-mouse IgG. Signal fluctuation of the dual mode sensor chip reader was below 1.2% and 0.8% for SPR and SPCE, respectively. The SPR response in this configuration showed a minimum detection level of 1 μg ml(-1), and the SPCE response showed a minimum detection level of 1 ng ml(-1) for the same sample. A range of human IgG concentrations in human serum was also analyzed with the dual mode sensor chip. The SPCE measurement is more sensitive than the SPR real-time measurement, and substantially extends the dynamic range of the assay platform, as well as enabling independent measurements of co-localized analytes on the same sensor chip region of interest. Since this assay platform is capable of measuring more than 1000 spatially encoded regions of interest on a 1 cm(2) sensor chip, it has the potential for high-content analyses of biological samples with both research and clinical applications.

  12. Fiber-free coupling between bulk laser beams and on-chip polymer-based multimode waveguides.

    Science.gov (United States)

    Jensen, Thomas G; Nielsen, Lars B; Kutter, Jörg P

    2011-05-01

    In this paper, we demonstrate the design of a virtually alignment-free optical setup for use with microfluidic applications involving a layered glass/SU-8/PDMS (polydimethylsiloxane) chip. We show how inexpensive external lenses combined with carefully designed on-chip lenses can be used to couple light from a bulk beam to on-chip waveguides and back into a bulk beam again. Using this setup, as much as 20% of the light coming from the source can be retrieved after passing through the on-chip waveguides. The proposed setup is based on a pin-aided alignment system that makes it possible to change chips in the optical train in only a few seconds with a standard deviation of about 2% in the transmitted power. Furthermore, we demonstrate how these optical setups can be combined with microfluidics to create an on-chip flow cytometer enabling detection and counting of polystyrene particles down to 1 μm at a rate of 100 Hz. Copyright © 2011 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  13. Comparative Sensitivities of Gravitational Wave Detectors Based on Atom Interferometers and Light Interferometers

    Science.gov (United States)

    Baker, John G.; Thorpe, J. I.

    2012-01-01

    We consider a class of proposed gravitational wave detectors based on multiple atomic interferometers separated by large baselines and referenced by common laser systems. We compute the sensitivity limits of these detectors due to intrinsic phase noise of the light sources, non-inertial motion of the light sources, and atomic shot noise and compare them to sensitivity limits for traditional light interferometers. We find that atom interferometers and light interferometers are limited in a nearly identical way by intrinsic phase noise and that both require similar mitigation strategies (e.g. multiple arm instruments) to reach interesting sensitivities. The sensitivity limit from motion of the light sources is slightly different and favors the atom interferometers in the low-frequency limit, although the limit in both cases is severe. Whether this potential advantage outweighs the additional complexity associated with including atom interferometers will require further study.

  14. Mercury Atomic Frequency Standards for Space Based Navigation and Timekeeping

    Science.gov (United States)

    Tjoelker, R. L.; Burt, E. A.; Chung, S.; Hamell, R. L.; Prestage, J. D.; Tucker, B.; Cash, P.; Lutwak, R.

    2012-01-01

    A low power Mercury Atomic Frequency Standard (MAFS) has been developed and demonstrated on the path towards future space clock applications. A self contained mercury ion breadboard clock: emulating flight clock interfaces, steering a USO local oscillator, and consuming approx 40 Watts has been operating at JPL for more than a year. This complete, modular ion clock instrument demonstrates that key GNSS size, weight, and power (SWaP) requirements can be achieved while still maintaining short and long term performance demonstrated in previous ground ion clocks. The MAFS breadboard serves as a flexible platform for optimizing further space clock development and guides engineering model design trades towards fabrication of an ion clock for space flight.

  15. A highly sensitive carbapenemase assay using laser desorption/ionization mass spectrometry based on a parylene-matrix chip.

    Science.gov (United States)

    Park, Jong-Min; Kim, Jo-Il; Noh, Joo-Yoon; Kim, Mira; Kang, Min-Jung; Pyun, Jae-Chul

    2017-09-01

    A quantitative carbapenemase assay was developed using laser desorption/ionization mass spectrometry (LDI-MS) based on a parylene-matrix chip. As a first step, the reproducibility (spot-to-spot, shot-to-shot, and day-to-day) of LDI-MS based on a parylene-matrix chip and the quantification ranges for four carbapenem antibiotics (doripenem, ertapenem, imipenem, and meropenem) were determined. A carbapenem-susceptibility test was performed using the four carbapenems and 51 bacterial strains that displayed (1) carbapenem resistance with carbapenemase, (2) carbapenem resistance without carbapenemase, or (3) carbapenem susceptibility. The susceptibility test results showed that LDI-MS based on a parylene-matrix chip was more sensitive and selective for detecting the carbapenemase reaction than conventional MALDI-TOF MS based on a 2,5-dihydroxybenzoic acid matrix. Copyright © 2017 Elsevier Inc. All rights reserved.

  16. Quantifying Asphalt Emulsion-Based Chip Seal Curing Times Using Electrical Resistance Measurements.

    Science.gov (United States)

    2017-04-15

    Chip sealing typically consists of covering a pavement surface with asphalt emulsion into which aggregate chips are embedded. The asphalt emulsion cures through the evaporation of water, thus providing mechanical strength to adhere to the pavement wh...

  17. Implementation and characterization of a quartz tuning fork based probe consisted of discrete resonators for dynamic mode atomic force microscopy.

    Science.gov (United States)

    Akiyama, Terunobu; de Rooij, Nicolaas F; Staufer, Urs; Detterbeck, Manfred; Braendlin, Dominik; Waldmeier, Simon; Scheidiger, Martin

    2010-06-01

    The quartz tuning fork based probe {e.g., Akiyama et al. [Appl. Surf. Sci. 210, 18 (2003)]}, termed "A-Probe," is a self-sensing and self-actuating (exciting) probe for dynamic mode atomic force microscope (AFM) operation. It is an oscillatory force sensor consisting of the two discrete resonators. This paper presents the investigations on an improved A-Probe: its batch fabrication and assembly, mounting on an AFM head, electrical setup, characterization, and AFM imaging. The fundamental features of the A-Probe are electrically and optically characterized in "approach-withdraw" experiments. Further investigations include the frequency response of an A-Probe to small mechanical vibrations externally applied to the tip and the effective loading force yielding between the tip and the sample during the periodic contact. Imaging of an electronic chip, a compact disk stamper, carbon nanotubes, and Si beads is demonstrated with this probe at ambient conditions in the so-called frequency modulation mode. A special probe substrate, which can snap on a receptacle fixed on an AFM head, and a special holder including a preamplifier electronic are introduced. We hope that the implementation and characterization of the A-Probe described in this paper will provide hints for new scanning probe techniques.

  18. Silicon-based all-optical multi microring network-on-chip.

    Science.gov (United States)

    Pintus, Paolo; Contu, Pietro; Raponi, Pier Giorgio; Cerutti, Isabella; Andriolli, Nicola

    2014-02-15

    An optical multi microring network-on-chip (MMR NoC) is proposed and evaluated through numerical simulations. The network architecture consists of a central resonating microring with local microrings connected to the input/output ports. A mathematical model based on the transfer matrix method is used to assess the MMR NoC performance and to analyze the fabrication tolerances. Results show that the proposed architecture exhibits a limited coherent crosstalk with a bandwidth suitable for 10  Gb/s signals, and it is robust to coupling ratio variations and ring radii fabrication inaccuracies.

  19. Microwave Chip-Based Beam Splitter for Low-Energy Guided Electrons.

    Science.gov (United States)

    Hammer, Jakob; Thomas, Sebastian; Weber, Philipp; Hommelhoff, Peter

    2015-06-26

    We present a novel beam splitter for low-energy electrons using a micro-structured guiding potential created above the surface of a planar microwave chip. Beam splitting arises from smoothly transforming the transverse guiding potential for an electron beam from a single-well harmonic confinement into a double well, thereby generating two separated output beams with 5 mm lateral spacing. Efficient beam splitting is observed for electron kinetic energies up to 3 eV, in excellent agreement with particle tracking simulations. We discuss prospects of this novel beam splitter approach for electron-based quantum matter-wave optics experiments.

  20. Rapid identification of Yersinia pestis and Brucella melitensis by chip-based continuous flow PCR

    Science.gov (United States)

    Dietzsch, Michael; Hlawatsch, Nadine; Melzer, Falk; Tomaso, Herbert; Gärtner, Claudia; Neubauer, Heinrich

    2012-06-01

    To combat the threat of biological agents like Yersinia pestis and Brucella melitensis in bioterroristic scenarios requires fast, easy-to-use and safe identification systems. In this study we describe a system for rapid amplification of specific genetic markers for the identification of Yersinia pestis and Brucella melitensis. Using chip based PCR and continuous flow technology we were able to amplify the targets simultaneously with a 2-step reaction profile within 20 minutes. The subsequent analysis of amplified fragments by standard gel electrophoresis requires another 45 minutes. We were able to detect both pathogens within 75 minutes being much faster than most other nucleic acid amplification technologies.

  1. Chip-based device for parallel sorting, amplification, detection, and identification of nucleic acid subsequences

    Energy Technology Data Exchange (ETDEWEB)

    Beer, Neil Reginald; Colston, Jr, Billy W.

    2016-08-09

    An apparatus for chip-based sorting, amplification, detection, and identification of a sample having a planar substrate. The planar substrate is divided into cells. The cells are arranged on the planar substrate in rows and columns. Electrodes are located in the cells. A micro-reactor maker produces micro-reactors containing the sample. The micro-reactor maker is positioned to deliver the micro-reactors to the planar substrate. A microprocessor is connected to the electrodes for manipulating the micro-reactors on the planar substrate. A detector is positioned to interrogate the sample contained in the micro-reactors.

  2. Random number generator based on an integrated laser with on-chip optical feedback

    Science.gov (United States)

    Verschaffelt, Guy; Khoder, Mulham; Van der Sande, Guy

    2017-11-01

    We discuss the design and testing of a laser integrated with a long on-chip optical feedback section. The device and feedback section have been fabricated on a generic photonic integration platform using only standard building blocks. We have been able to integrate a 10 cm feedback length on a footprint of 5.5 mm2. By controlling the amount of feedback, we achieve chaotic dynamics in the long-cavity regime and show that the resulting dynamics is sufficiently complex in order to generate random bits based on the chaotic intensity fluctuation at a rate of 500 Mbits/s.

  3. Intelligent Home Control System Based on Single Chip Microcomputer

    Science.gov (United States)

    Yang, Libo

    2017-12-01

    Intelligent home as a way to achieve the realization of the family information has become an important part of the development of social information, Internet of Things because of its huge application prospects, will be smart home industry in the development process of a more realistic breakthrough in the smart home industry development has great significance. This article is based on easy to implement, easy to operate, close to the use of the design concept, the use of STC89C52 microcontroller as the control core for the control terminal, and including infrared remote control, buttons, Web interface, including multiple control sources to control household appliances. The second chapter of this paper describes the design of the hardware and software part of the specific implementation, the fifth chapter is based on the design of a good function to build a specific example of the environment.

  4. A high stability optical frequency reference based on thermal calcium atoms

    Science.gov (United States)

    2011-05-21

    simple, compact optical frequency standard based upon thennal calcium atoms. Using a Ramsey- Borde specu·ometer we excite features with linewidths < 5kHz...Optical Frequency (kHz) Figure 2: Ramsey- Borde fringes , shown here with both recoil components. Fringe width is < 5kHz (FWHM). tlli.s theoretical value...send ~ 2 m W of the light to a fom-beam Ramsey- Borde spectrometer that excites the atoms in a thermal beam [3]. Atoms emerge from an aperture in theCa

  5. Enrichment of true positives from structural alerts through the use of novel atomic fragment based descriptors

    DEFF Research Database (Denmark)

    Long, A.; Rydberg, Patrik

    2013-01-01

    To enhance the discrimination rate for methods applying structural alerts and biotransformation rules in the prediction of toxicity and drug metabolism we have developed a set of novel fragment based atomic descriptors. These atomic descriptors encode the properties of the fragments separating...... an atom from the closest end of a branch or the molecule. The end of a branch and the end of a molecule, as well as the selection of the fragments, are made by an algorithm that uses only the distance matrix of the molecule. The novel descriptors are applied to a small set of biotransformation rules...

  6. Fast and accurate grid representations for atom-based docking with partner flexibility.

    Science.gov (United States)

    de Vries, Sjoerd J; Zacharias, Martin

    2017-06-30

    Macromolecular docking methods can broadly be divided into geometric and atom-based methods. Geometric methods use fast algorithms that operate on simplified, grid-like molecular representations, while atom-based methods are more realistic and flexible, but far less efficient. Here, a hybrid approach of grid-based and atom-based docking is presented, combining precalculated grid potentials with neighbor lists for fast and accurate calculation of atom-based intermolecular energies and forces. The grid representation is compatible with simultaneous multibody docking and can tolerate considerable protein flexibility. When implemented in our docking method ATTRACT, grid-based docking was found to be ∼35x faster. With the OPLSX forcefield instead of the ATTRACT coarse-grained forcefield, the average speed improvement was >100x. Grid-based representations may allow atom-based docking methods to explore large conformational spaces with many degrees of freedom, such as multiple macromolecules including flexibility. This increases the domain of biological problems to which docking methods can be applied. © 2017 Wiley Periodicals, Inc. © 2017 Wiley Periodicals, Inc.

  7. Field programmable gate array–based servo control integrated chip for a six-axis articulated robot manipulator

    Directory of Open Access Journals (Sweden)

    Ying-Shieh Kung

    2016-05-01

    Full Text Available The objective of this article is to build a field programmable gate array–based six-axis servo control integrated chip which can integrate the function of a motion trajectory planning and the function of six position/speed/current servo controllers into one integrated chip. In the work, first, a mathematical modeling of a robot manipulator with the actuator using permanent magnet synchronous motor is derived. Second, the proportional controller in the position loop, a proportional–integral controller in the speed loop and a vector controller in the current loop for each axis are applied. Third, a system on a programmable chip technology which comprises an Altera field programmable gate array chip and an embedded soft-core Nios-II processor is considered to develop the proposed servo control integrated chip. However, in the servo control integrated chip, it has two modules. The first module is an embedded soft-core Nios-II processor which is used to generate the motion trajectory planning by software. The second module presents a six-axis servo controller intellectual property by hardware which is applied to execute six position/speed/current controllers. Therefore, the function of a motion trajectory command and the function of six position/speed/current servo controllers for a six-axis robot manipulator can be integrated into one field programmable gate array. Finally, to verify the effectiveness and correctness of the proposed field programmable gate array–based servo control integrated chip, a six-axis robot manipulator is applied and some experimental results are demonstrated.

  8. In vivo continuous glucose monitoring using a chip based near infrared sensor

    Science.gov (United States)

    Ben Mohammadi, L.; Sigloch, S.; Frese, I.; Welzel, K.; Göddel, M.; Klotzbücher, T.

    2014-05-01

    Diabetes is a serious health condition considered to be one of the major healthcare epidemics of modern era. An effective treatment of this disease can be only achieved by reliable continuous information on blood glucose levels. In this work we present a minimally invasive, chip-based near infrared (NIR) sensor, combined with microdialysis, for continuous glucose monitoring (CGM). The sensor principle is based on difference absorption spectroscopy in the 1st overtone band of the near infrared spectrum. The device features a multi-emitter LED and InGaAs-Photodiodes, which are located on a single electronic board (non-disposable part), connected to a personal computer via Bluetooth. The disposable part consists of a chip containing the fluidic connections for microdialysis, two fluidic channels acting as optical transmission cells and total internally reflecting mirrors for in- and out-coupling of the LED light to the chip and to the detectors. The sensor is combined with an intraveneous microdialysis to separate the glucose from the cells and proteins in the blood and operates without any chemical consumption. In vitro measurements showed a linear relationship between glucose concentration and the integrated difference signal with a coefficient of determination of 99 % in the relevant physiological concentration range from 0 to 400 mg/dl. In vivo measurements on 10 patients showed that the NIR-CGM sensor data reflects the blood reference values adequately, if a proper calibration and signal drift compensation is applied. The MARE (mean absolute relative error) value taken over all patient data is 13.8 %. The best achieved MARE value is at 4.8 %, whereas the worst is 25.8 %, with a standard deviation of 5.5 %.

  9. From bioseparation to artificial micro-organs: microfluidic chip based particle manipulation techniques

    Science.gov (United States)

    Stelzle, Martin

    2010-02-01

    Microfluidic device technology provides unique physical phenomena which are not available in the macroscopic world. These may be exploited towards a diverse array of applications in biotechnology and biomedicine ranging from bioseparation of particulate samples to the assembly of cells into structures that resemble the smallest functional unit of an organ. In this paper a general overview of chip-based particle manipulation and separation is given. In the state of the art electric, magnetic, optical and gravitational field effects are utilized. Also, mechanical obstacles often in combination with force fields and laminar flow are employed to achieve separation of particles or molecules. In addition, three applications based on dielectrophoretic forces for particle manipulation in microfluidic systems are discussed in more detail. Firstly, a virus assay is demonstrated. There, antibody-loaded microbeads are used to bind virus particles from a sample and subsequently are accumulated to form a pico-liter sized aggregate located at a predefined position in the chip thus enabling highly sensitive fluorescence detection. Secondly, subcellular fractionation of mitochondria from cell homogenate yields pure samples as was demonstrated by Western Blot and 2D PAGE analysis. Robust long-term operation with complex cell homogenate samples while avoiding electrode fouling is achieved by a set of dedicated technical means. Finally, a chip intended for the dielectrophoretic assembly of hepatocytes and endothelial cells into a structure resembling a liver sinusoid is presented. Such "artificial micro organs" are envisioned as substance screening test systems providing significantly higher predictability with respect to the in vivo response towards a substance under test.

  10. Effect of atom- and group-based truncations on biomolecules simulated with reaction-field electrostatics

    Science.gov (United States)

    Ni, Boris

    2011-01-01

    The performance of the reaction-field method of electrostatics is tested in molecular dynamics simulations of protein human interleukin-4 and a short DNA fragment in explicit solvent. Two truncation schemes are considered: one based on the position of atomic charges in water molecules and the other on the position of groups of charges. The group-based truncation leads to the melting of the DNA double helix. In contrast, the atom-based truncation maintains the helical structure intact. Similarly for the protein, the group-based truncation leads to an unfolding at pH 2 while the atom-based truncation produces stable trajectories at low and normal pH, in agreement with experiment. Artificial repulsion between charged residues associated with the group-based truncation is identified as the microscopic reason behind unfolding of the protein. Implications of different truncation schemes in reaction-field simulations of biomolecules are discussed. PMID:21311933

  11. Restoring the lattice of Si-based atom probe reconstructions for enhanced information on dopant positioning.

    Science.gov (United States)

    Breen, Andrew J; Moody, Michael P; Ceguerra, Anna V; Gault, Baptiste; Araullo-Peters, Vicente J; Ringer, Simon P

    2015-12-01

    The following manuscript presents a novel approach for creating lattice based models of Sb-doped Si directly from atom probe reconstructions for the purposes of improving information on dopant positioning and directly informing quantum mechanics based materials modeling approaches. Sophisticated crystallographic analysis techniques are used to detect latent crystal structure within the atom probe reconstructions with unprecedented accuracy. A distortion correction algorithm is then developed to precisely calibrate the detected crystal structure to the theoretically known diamond cubic lattice. The reconstructed atoms are then positioned on their most likely lattice positions. Simulations are then used to determine the accuracy of such an approach and show that improvements to short-range order measurements are possible for noise levels and detector efficiencies comparable with experimentally collected atom probe data. Copyright © 2015 Elsevier B.V. All rights reserved.

  12. On-chip magnetic bead-based DNA melting curve analysis using a magnetoresistive sensor

    Energy Technology Data Exchange (ETDEWEB)

    Rizzi, Giovanni, E-mail: giori@nanotech.dtu.dk; Østerberg, Frederik W.; Henriksen, Anders D.; Dufva, Martin; Hansen, Mikkel F., E-mail: mikkel.hansen@nanotech.dtu.dk

    2015-04-15

    We present real-time measurements of DNA melting curves in a chip-based system that detects the amount of surface-bound magnetic beads using magnetoresistive magnetic field sensors. The sensors detect the difference between the amount of beads bound to the top and bottom sensor branches of the differential sensor geometry. The sensor surfaces are functionalized with wild type (WT) and mutant type (MT) capture probes, differing by a single base insertion (a single nucleotide polymorphism, SNP). Complementary biotinylated targets in suspension couple streptavidin magnetic beads to the sensor surface. The beads are magnetized by the field arising from the bias current passed through the sensors. We demonstrate the first on-chip measurements of the melting of DNA hybrids upon a ramping of the temperature. This overcomes the limitation of using a single washing condition at constant temperature. Moreover, we demonstrate that a single sensor bridge can be used to genotype a SNP. - Highlights: • We apply magnetoresistive sensors to study solid-surface hybridization kinetics of DNA. • We measure DNA melting profiles for perfectly matching DNA duplexes and for a single base mismatch. • We present a procedure to correct for temperature dependencies of the sensor output. • We reliably extract melting temperatures for the DNA hybrids. • We demonstrate direct measurement of differential binding signal for two probes on a single sensor.

  13. Coherent and dynamic beam splitting based on light storage in cold atoms

    OpenAIRE

    Kwang-Kyoon Park; Tian-Ming Zhao; Jong-Chan Lee; Young-Tak Chough; Yoon-Ho Kim

    2016-01-01

    We demonstrate a coherent and dynamic beam splitter based on light storage in cold atoms. An input weak laser pulse is first stored in a cold atom ensemble via electromagnetically-induced transparency (EIT). A set of counter-propagating control fields, applied at a later time, retrieves the stored pulse into two output spatial modes. The high visibility interference between the two output pulses clearly demonstrates that the beam splitting process is coherent. Furthermore, by manipulating the...

  14. Hybrid statistics-simulations based method for atom-counting from ADF STEM images

    Energy Technology Data Exchange (ETDEWEB)

    De wael, Annelies, E-mail: annelies.dewael@uantwerpen.be [Electron Microscopy for Materials Science (EMAT), University of Antwerp, Groenenborgerlaan 171, 2020 Antwerp (Belgium); De Backer, Annick [Electron Microscopy for Materials Science (EMAT), University of Antwerp, Groenenborgerlaan 171, 2020 Antwerp (Belgium); Jones, Lewys; Nellist, Peter D. [Department of Materials, University of Oxford, Parks Road, OX1 3PH Oxford (United Kingdom); Van Aert, Sandra, E-mail: sandra.vanaert@uantwerpen.be [Electron Microscopy for Materials Science (EMAT), University of Antwerp, Groenenborgerlaan 171, 2020 Antwerp (Belgium)

    2017-06-15

    A hybrid statistics-simulations based method for atom-counting from annular dark field scanning transmission electron microscopy (ADF STEM) images of monotype crystalline nanostructures is presented. Different atom-counting methods already exist for model-like systems. However, the increasing relevance of radiation damage in the study of nanostructures demands a method that allows atom-counting from low dose images with a low signal-to-noise ratio. Therefore, the hybrid method directly includes prior knowledge from image simulations into the existing statistics-based method for atom-counting, and accounts in this manner for possible discrepancies between actual and simulated experimental conditions. It is shown by means of simulations and experiments that this hybrid method outperforms the statistics-based method, especially for low electron doses and small nanoparticles. The analysis of a simulated low dose image of a small nanoparticle suggests that this method allows for far more reliable quantitative analysis of beam-sensitive materials. - Highlights: • A hybrid method for atom-counting from ADF STEM images is introduced. • Image simulations are incorporated into a statistical framework in a reliable manner. • Limits of the existing methods for atom-counting are far exceeded. • Reliable counting results from an experimental low dose image are obtained. • Progress towards reliable quantitative analysis of beam-sensitive materials is made.

  15. Photonic chip based transmitter optimization and receiver demultiplexing of a 1.28 Tbit/s OTDM signal

    DEFF Research Database (Denmark)

    Vo, T.D.; Hu, Hao; Galili, Michael

    2010-01-01

    We demonstrate chip-based Tbaud optical signal processing for all-optical performance monitoring, switching and demultiplexing based on the instantaneous Kerr nonlinearity in a dispersion-engineered As_2S_3 planar waveguide. At the Tbaud transmitter, we use a THz bandwidth radio-frequency spectrum....../s via four-wave mixing with negligible system penalty (

  16. Recent advances in particle and droplet manipulation for lab-on-a-chip devices based on surface acoustic waves.

    Science.gov (United States)

    Wang, Zhuochen; Zhe, Jiang

    2011-04-07

    Manipulation of microscale particles and fluid liquid droplets is an important task for lab-on-a-chip devices for numerous biological researches and applications, such as cell detection and tissue engineering. Particle manipulation techniques based on surface acoustic waves (SAWs) appear effective for lab-on-a-chip devices because they are non-invasive, compatible with soft lithography micromachining, have high energy density, and work for nearly any type of microscale particles. Here we review the most recent research and development of the past two years in SAW based particle and liquid droplet manipulation for lab-on-a-chip devices including particle focusing and separation, particle alignment and patterning, particle directing, and liquid droplet delivery.

  17. 'Cytology-on-a-chip' based sensors for monitoring of potentially malignant oral lesions.

    Science.gov (United States)

    Abram, Timothy J; Floriano, Pierre N; Christodoulides, Nicolaos; James, Robert; Kerr, A Ross; Thornhill, Martin H; Redding, Spencer W; Vigneswaran, Nadarajah; Speight, Paul M; Vick, Julie; Murdoch, Craig; Freeman, Christine; Hegarty, Anne M; D'Apice, Katy; Phelan, Joan A; Corby, Patricia M; Khouly, Ismael; Bouquot, Jerry; Demian, Nagi M; Weinstock, Y Etan; Rowan, Stephanie; Yeh, Chih-Ko; McGuff, H Stan; Miller, Frank R; Gaur, Surabhi; Karthikeyan, Kailash; Taylor, Leander; Le, Cathy; Nguyen, Michael; Talavera, Humberto; Raja, Rameez; Wong, Jorge; McDevitt, John T

    2016-09-01

    Despite significant advances in surgical procedures and treatment, long-term prognosis for patients with oral cancer remains poor, with survival rates among the lowest of major cancers. Better methods are desperately needed to identify potential malignancies early when treatments are more effective. To develop robust classification models from cytology-on-a-chip measurements that mirror diagnostic performance of gold standard approach involving tissue biopsy. Measurements were recorded from 714 prospectively recruited patients with suspicious lesions across 6 diagnostic categories (each confirmed by tissue biopsy -histopathology) using a powerful new 'cytology-on-a-chip' approach capable of executing high content analysis at a single cell level. Over 200 cellular features related to biomarker expression, nuclear parameters and cellular morphology were recorded per cell. By cataloging an average of 2000 cells per patient, these efforts resulted in nearly 13 million indexed objects. Binary "low-risk"/"high-risk" models yielded AUC values of 0.88 and 0.84 for training and validation models, respectively, with an accompanying difference in sensitivity+specificity of 6.2%. In terms of accuracy, this model accurately predicted the correct diagnosis approximately 70% of the time, compared to the 69% initial agreement rate of the pool of expert pathologists. Key parameters identified in these models included cell circularity, Ki67 and EGFR expression, nuclear-cytoplasmic ratio, nuclear area, and cell area. This chip-based approach yields objective data that can be leveraged for diagnosis and management of patients with PMOL as well as uncovering new molecular-level insights behind cytological differences across the OED spectrum. Copyright © 2016 Elsevier Ltd. All rights reserved.

  18. Integrated chip-based physiometer for automated fish embryo toxicity biotests in pharmaceutical screening and ecotoxicology.

    Science.gov (United States)

    Akagi, Jin; Zhu, Feng; Hall, Chris J; Crosier, Kathryn E; Crosier, Philip S; Wlodkowic, Donald

    2014-06-01

    Transgenic zebrafish (Danio rerio) models of human diseases have recently emerged as innovative experimental systems in drug discovery and molecular pathology. None of the currently available technologies, however, allow for automated immobilization and treatment of large numbers of spatially encoded transgenic embryos during real-time developmental analysis. This work describes the proof-of-concept design and validation of an integrated 3D microfluidic chip-based system fabricated directly in the poly(methyl methacrylate) transparent thermoplastic using infrared laser micromachining. At its core, the device utilizes an array of 3D micromechanical traps to actively capture and immobilize single embryos using a low-pressure suction. It also features built-in piezoelectric microdiaphragm pumps, embryo-trapping suction manifold, drug delivery manifold, and optically transparent indium tin oxide heating element to provide optimal temperature during embryo development. Furthermore, we present design of the proof-of-concept off-chip electronic interface equipped with robotic servo actuator driven stage, innovative servomotor-actuated pinch valves, and embedded miniaturized fluorescent USB microscope. Our results showed that the innovative device has 100% embryo-trapping efficiency while supporting normal embryo development for up to 72 hr in a confined microfluidic environment. We also showed data that this microfluidic system can be readily applied to kinetic analysis of a panel of investigational antiangiogenic agents in transgenic zebrafish lines. The optical transparency and embryo immobilization allow for convenient visualization of developing vasculature patterns in response to drug treatment without the need for specimen re-positioning. The integrated electronic interfaces bring the lab-on-a-chip systems a step closer to realization of complete analytical automation. © 2014 International Society for Advancement of Cytometry.

  19. SAD-Based Stereo Vision Machine on a System-on-Programmable-Chip (SoPC

    Directory of Open Access Journals (Sweden)

    Zhangwei Chen

    2013-03-01

    Full Text Available This paper, proposes a novel solution for a stereo vision machine based on the System-on-Programmable-Chip (SoPC architecture. The SOPC technology provides great convenience for accessing many hardware devices such as DDRII, SSRAM, Flash, etc., by IP reuse. The system hardware is implemented in a single FPGA chip involving a 32-bit Nios II microprocessor, which is a configurable soft IP core in charge of managing the image buffer and users’ configuration data. The Sum of Absolute Differences (SAD algorithm is used for dense disparity map computation. The circuits of the algorithmic module are modeled by the Matlab-based DSP Builder. With a set of configuration interfaces, the machine can process many different sizes of stereo pair images. The maximum image size is up to 512 K pixels. This machine is designed to focus on real time stereo vision applications. The stereo vision machine offers good performance and high efficiency in real time. Considering a hardware FPGA clock of 90 MHz, 23 frames of 640 × 480 disparity maps can be obtained in one second with 5 × 5 matching window and maximum 64 disparity pixels.

  20. SAD-based stereo vision machine on a System-on-Programmable-Chip (SoPC).

    Science.gov (United States)

    Zhang, Xiang; Chen, Zhangwei

    2013-03-04

    This paper, proposes a novel solution for a stereo vision machine based on the System-on-Programmable-Chip (SoPC) architecture. The SOPC technology provides great convenience for accessing many hardware devices such as DDRII, SSRAM, Flash, etc., by IP reuse. The system hardware is implemented in a single FPGA chip involving a 32-bit Nios II microprocessor, which is a configurable soft IP core in charge of managing the image buffer and users' configuration data. The Sum of Absolute Differences (SAD) algorithm is used for dense disparity map computation. The circuits of the algorithmic module are modeled by the Matlab-based DSP Builder. With a set of configuration interfaces, the machine can process many different sizes of stereo pair images. The maximum image size is up to 512 K pixels. This machine is designed to focus on real time stereo vision applications. The stereo vision machine offers good performance and high efficiency in real time. Considering a hardware FPGA clock of 90 MHz, 23 frames of 640 × 480 disparity maps can be obtained in one second with 5 × 5 matching window and maximum 64 disparity pixels.

  1. Atomic layer deposition of scandium-based oxides

    Energy Technology Data Exchange (ETDEWEB)

    Nyns, Laura; Lisoni, Judit G.; Bosch, Geert van den; Elshocht, Sven van; Houdt, Jan van [IMEC, Leuven (Belgium)

    2014-02-15

    Gd{sub x}Sc{sub 2-x}O{sub 3} and Al{sub x}Sc{sub 2-x}O{sub 3} have been investigated as potential high-k intergate dielectric (IGD) in planar NAND flash technology, such as hybrid floating gate (HFG). We have examined the atomic layer deposition (ALD) of Sc{sub 2}O{sub 3}, Gd{sub x}Sc{sub 2-x}O{sub 3}, and Al{sub x}Sc{sub 2-x}O{sub 3} on Si using Sc(MeCp){sub 3}, Gd({sup i}PrCp){sub 3}, TMA, and H{sub 2}O as precursors. The composition of Gd{sub x}Sc{sub 2-x}O{sub 3} and Al{sub x}Sc{sub 2-x}O{sub 3} ranged from 4% to 76% Gd and from 7% to 66% Al, respectively. All compositions show linear growth behavior. While pure Sc{sub 2}O{sub 3} is crystalline as-deposited, the layer becomes amorphous once ∝20% of Al is added. The (222) reflection of the cubic phase is also seen for Gd{sub x}Sc{sub 2-x}O{sub 3} with less than 9% Gd. The bandgap of as-deposited Gd{sub x}Sc{sub 2-x}O{sub 3} decreases with increasing Gd content while the opposite trend is observed for Al{sub x}Sc{sub 2-x}O{sub 3}. A k-value of ∝21 can be obtained for Gd{sub x}Sc{sub 2-x}O{sub 3} with approximately 26-52% Gd, irrespective of the Gd content. For Al{sub x}Sc{sub 2-x}O{sub 3} on the other hand, a maximum k-value of ∝19 is achieved with ∝48% Al. Although the k-value of Al{sub x}Sc{sub 2-x}O{sub 3} is lower than that of Gd{sub x}Sc{sub 2-x}O{sub 3}, its large breakdown field makes this material more suitable for HFG flash applications. (copyright 2014 WILEY-VCH Verlag GmbH and Co. KGaA, Weinheim)

  2. Comparison of Atom Interferometers and Light Interferometers as Space-Based Gravitational Wave Detectors

    Science.gov (United States)

    Baker, John G.

    2012-01-01

    We consider a class of proposed gravitational wave detectors based on multiple atomic interferometers separated by large baselines and referenced by common laser systems. We compute the sensitivity limits of these detectors due to intrinsic phase noise of the light sources, non-inertial motion of the light sources, and atomic shot noise and compare them to sensitivity limits for traditional light interferometers. We find that atom interferometers and light interferometers are limited in a nearly identical way by intrinsic phase noise and that both require similar mitigation strategies (e.g. multiple arm instruments) to reach interesting sensitivities. The sensitivity limit from motion of the light sources is slightly different and favors the atom interferometers in the low-frequency limit, although the limit in both cases is severe.

  3. Simple Screening of Listeria monocytogenes Based on a Fluorescence Assay via a Laminated Lab-On-Paper Chip.

    Science.gov (United States)

    Pisamayarom, Kankanit; Suriyasomboon, Annop; Chaumpluk, Piyasak

    2017-11-28

    Monitoring food safety is essential for protecting the health and safety of consumers. Conventional methods used are time consuming and laborious, requiring anywhere from three to seven days to obtain results. Thus, better monitoring methods are required. In this study, a laminated lab-on-paper chip was developed, and its use for the screening of ready-to-eat seafood was demonstrated. The assay on a chip was based on loop-mediated isothermal DNA amplification (LAMP) of the hly gene of Listeria monocytogenes and fluorescence signal detection via SYBR Gold TM . Overall assay processes were completed in 4.5 h., (including 3.5 h. incubation for the bacteria enrichment, direct DNA amplification with no DNA extraction, and signal detection), without relying on standard laboratory facilities. Only positive samples induced fluorescence signals on chip upon illumination with UV light (λ = 460). The method has a limit of detection of 100 copies of L. monocytogenes DNA per 50 g of sample. No cross-reactivity was observed in samples contaminated with other bacteria. On-site monitoring of the seafood products using this chip revealed that one of 30 products from low sanitation vendors (3.33%) were contaminated, and these agreed with the results of PCR. The results demonstrated a benefit of this chip assay for practical on-site monitoring.

  4. An Integrated Microfabricated Chip with Double Functions as an Ion Source and Air Pump Based on LIGA Technology

    Directory of Open Access Journals (Sweden)

    Hua Li

    2017-01-01

    Full Text Available The injection and ionization of volatile organic compounds (VOA by an integrated chip is experimentally analyzed in this paper. The integrated chip consists of a needle-to-cylinder electrode mounting on the Polymethyl Methacrylate (PMMA substrate. The needle-to-cylinder electrode is designed and fabricated by Lithographie, Galvanoformung and Abformung (LIGA technology. In this paper, the needle is connected to a negative power supply of −5 kV and used as the cathode; the cylinder electrodes are composed of two arrays of cylinders and serve as the anode. The ionic wind is produced based on corona and glow discharges of needle-to-cylinder electrodes. The experimental setup is designed to observe the properties of the needle-to-cylinder discharge and prove its functions as an ion source and air pump. In summary, the main results are as follows: (1 the ionic wind velocity produced by the chip is about 0.79 m/s at an applied voltage of −3300 V; (2 acetic acid and ammonia water can be injected through the chip, which is proved by pH test paper; and (3 the current measured by a Faraday cup is about 10 pA for acetic acid and ammonia with an applied voltage of −3185 V. The integrated chip is promising for portable analytical instruments, such as ion mobility spectrometry (IMS, field asymmetric ion mobility spectrometry (FAIMS, and mass spectrometry (MS.

  5. Simple Screening of Listeria monocytogenes Based on a Fluorescence Assay via a Laminated Lab-On-Paper Chip

    Directory of Open Access Journals (Sweden)

    Kankanit Pisamayarom

    2017-11-01

    Full Text Available Monitoring food safety is essential for protecting the health and safety of consumers. Conventional methods used are time consuming and laborious, requiring anywhere from three to seven days to obtain results. Thus, better monitoring methods are required. In this study, a laminated lab-on-paper chip was developed, and its use for the screening of ready-to-eat seafood was demonstrated. The assay on a chip was based on loop-mediated isothermal DNA amplification (LAMP of the hly gene of Listeria monocytogenes and fluorescence signal detection via SYBR GoldTM. Overall assay processes were completed in 4.5 h., (including 3.5 h. incubation for the bacteria enrichment, direct DNA amplification with no DNA extraction, and signal detection, without relying on standard laboratory facilities. Only positive samples induced fluorescence signals on chip upon illumination with UV light (λ = 460. The method has a limit of detection of 100 copies of L. monocytogenes DNA per 50 g of sample. No cross-reactivity was observed in samples contaminated with other bacteria. On-site monitoring of the seafood products using this chip revealed that one of 30 products from low sanitation vendors (3.33% were contaminated, and these agreed with the results of PCR. The results demonstrated a benefit of this chip assay for practical on-site monitoring.

  6. The Evopopbot Chip: Ultra High-throughput Evolutionary Population Bottlenecking using Drop-Based Microfluidics

    Science.gov (United States)

    Chang, Connie; Rotem, Assaf; Serohijos, Adrian; Zhang, Huidan; Tao, Ye; Fischer Hesselbrock, Audrey; Thielen, Peter; Mehoke, Thomas; Wolfe, Joshua; Wobus, Christiane; Feldman, Andrew; Shakhnovich, Eugene; Weitz, David

    2014-03-01

    The study of how viruses propagate is important for curing disease and preventing viral outbreaks. In nature, viruses can compete with one another, and the most evolutionary fit virus usually takes over a population. Yet there exist variants in the population that can escape subjected evolutionary pressures and eventually dominate the population. Successful studies of viral epidemics hinges on the ability to access these variants. Here, we present the use of droplet-based microfluidics as a simple method to segregate and propagate a viral population as individual viral lineages, simultaneously performing millions of in vitroevolutionary bottlenecking experiments. We introduce a novel microfluidic device, called the ``Evopopbot Chip'', that allows for simultaneous passaging of millions of evolutionary bottlenecking events by splitting drops containing previous generations of viruses and merging with drops containing new host cells. After several generations of viral replication in the evolution chip, we discover hundreds of new viruses that are able to escape a neutralizing antibody selection pressure compared to bulk passaging.

  7. Chip based MEMS Ion Thruster to significantly enhance Cold Gas Thruster Lifetime for LISA

    Science.gov (United States)

    Tajmar, M.; Laufer, P.; Bock, D.

    2017-05-01

    Micropropulsion is a key component for ultraprecise attitude and orbit control required by the eLISA mission. LISA pathfinder uses cold gas micro thrusters that are accurate but require large tanks due to their very low specific impulse, which in turn limits the possible mission duration of the follow up eLISA mission. Recently, we developed a compact MEMS ion thruster on the chip with a size of only 1cm2 that can be simply attached to a gas feeding line like the one used for cold gas thrusters. It provides a specific impulse greater than 1000 s and only requires a single DC voltage. Since the operating principle is based on field emission, very low thrust noises similar to FEEP thrusters are expected but with gas propellants. The MEMS ion thruster chip could be mounted in parallel to the existing gold gas system providing high Isp and therefore long mission durations while leaving the cold gas system in place. To enable a possible mission extension, the MEMS ion thruster could take over from the cold gas system as a backup while maintaining the existing micropropulsion thruster system with its heritage therefore minimum risk.

  8. Design of automatic curtain controlled by wireless based on single chip 51 microcomputer

    Science.gov (United States)

    Han, Dafeng; Chen, Xiaoning

    2017-08-01

    In order to realize the wireless control of the domestic intelligent curtains, a set of wireless intelligent curtain control system based on 51 single chip microcomputer have been designed in this paper. The intelligent curtain can work in the manual mode, automatic mode and sleep mode and can be carried out by the button and mobile phone APP mode loop switch. Through the photosensitive resistance module and human pyroelectric infrared sensor to collect the indoor light value and the data whether there is the person in the room, and then after single chip processing, the motor drive module is controlled to realize the positive inversion of the asynchronous motor, the intelligent opening and closing of the curtain have been realized. The operation of the motor can be stopped under the action of the switch and the curtain opening and closing and timing switch can be controlled through the keys and mobile phone APP. The optical fiber intensity, working mode, curtain state and system time are displayed by LCD1602. The system has a high reliability and security under practical testing and with the popularity and development of smart home, the design has broad market prospects.

  9. Continuous Sensing Photonic Lab-on-a-Chip Platform Based on Cross-Linked Enzyme Crystals.

    Science.gov (United States)

    Conejero-Muriel, Mayte; Rodríguez-Ruiz, Isaac; Verdugo-Escamilla, Cristóbal; Llobera, Andreu; Gavira, José A

    2016-12-06

    Microfluidics or lab-on-a-chip technology offer clear advantages over conventional systems such as a dramatic reduction of reagent consumption or a shorter analysis time, which are translated into cost-effective systems. In this work, we present a photonic enzymatic lab-on-a-chip reactor based on cross-linked enzyme crystals (CLECs), able to work in continuous flow, as a highly sensitive, robust, reusable, and stable platform for continuous sensing with superior performance as compared to the state of the art. The microreactor is designed to facilitate the in situ crystallization and crystal cross-linking generating enzymatically active material that can be stored for months/years. Thus, and by means of monolithically integrated micro-optics elements, continuous enzymatic reactions can be spectrophotometrically monitored. Lipase, an enzyme with industrial significance for catalyzed transesterification, hydrolysis, and esterification reactions, is used to demonstrate the potential of the microplatforms as both a continuous biosensor and a microreactor for the synthesis of high value compounds.

  10. A smartphone-based chip-scale microscope using ambient illumination.

    Science.gov (United States)

    Lee, Seung Ah; Yang, Changhuei

    2014-08-21

    Portable chip-scale microscopy devices can potentially address various imaging needs in mobile healthcare and environmental monitoring. Here, we demonstrate the adaptation of a smartphone's camera to function as a compact lensless microscope. Unlike other chip-scale microscopy schemes, this method uses ambient illumination as its light source and does not require the incorporation of a dedicated light source. The method is based on the shadow imaging technique where the sample is placed on the surface of the image sensor, which captures direct shadow images under illumination. To improve the image resolution beyond the pixel size, we perform pixel super-resolution reconstruction with multiple images at different angles of illumination, which are captured while the user is manually tilting the device around any ambient light source, such as the sun or a lamp. The lensless imaging scheme allows for sub-micron resolution imaging over an ultra-wide field-of-view (FOV). Image acquisition and reconstruction are performed on the device using a custom-built Android application, constructing a stand-alone imaging device for field applications. We discuss the construction of the device using a commercial smartphone and demonstrate the imaging capabilities of our system.

  11. Electrochemical chip-based genomagnetic assay for detection of high-risk human papillomavirus DNA.

    Science.gov (United States)

    Bartosik, Martin; Durikova, Helena; Vojtesek, Borivoj; Anton, Milan; Jandakova, Eva; Hrstka, Roman

    2016-09-15

    Cervical cancer, being the fourth leading cause of cancer death in women worldwide, predominantly originates from a persistent infection with a high-risk human papillomavirus (HPV). Detection of DNA sequences from these high-risk strains, mostly HPV-16 and HPV-18, represents promising strategy for early screening, which would help to identify women with higher risk of cervical cancer. In developing countries, inadequate screening options lead to disproportionately high mortality rates, making a fast and inexpensive detection schemes highly important. Electrochemical sensors and assays offer an alternative to current methods of detection. We developed an electrochemical-chip based assay, in which target HPV DNA is captured via magnetic bead-modified DNA probes, followed by an antidigoxigenin-peroxidase detection system at screen-printed carbon electrode chips, enabling parallel measurements of eight samples simultaneously. We show sensitive detection in attomoles of HPV DNA, selective discrimination between HPV-16 and HPV-18 and good reproducibility. Most importantly, we show application of the assay into both cancer cell lines and cervical smears from patients. The electrochemical results correlated well with standard methods, making this assay potentially applicable in clinical practice. Copyright © 2016 Elsevier B.V. All rights reserved.

  12. Ultracompact on-chip photothermal power monitor based on silicon hybrid plasmonic waveguides

    Directory of Open Access Journals (Sweden)

    Wu Hao

    2017-01-01

    Full Text Available We propose and demonstrate an ultracompact on-chip photothermal power monitor based on a silicon hybrid plasmonic waveguide (HPWG, which consists of a metal strip, a silicon core, and a silicon oxide (SiO2 insulator layer between them. When light injected to an HPWG is absorbed by the metal strip, the temperature increases and the resistance of the metal strip changes accordingly due to the photothermal and thermal resistance effects of the metal. Therefore, the optical power variation can be monitored by measuring the resistance of the metal strip on the HPWG. To obtain the electrical signal for the resistance measurement conveniently, a Wheatstone bridge circuit is monolithically integrated with the HPWG on the same chip. As the HPWG has nanoscale light confinement, the present power monitor is as short as ~3 μm, which is the smallest photothermal power monitor reported until now. The compactness helps to improve the thermal efficiency and the response speed. For the present power monitor fabricated with simple fabrication processes, the measured responsivity is as high as about 17.7 mV/mW at a bias voltage of 2 V and the power dynamic range is as large as 35 dB.

  13. Efficient polarization insensitive complex wavefront control using Huygens' metasurfaces based on dielectric resonant meta-atoms

    CERN Document Server

    Chong, Katie E; Staude, Isabelle; James, Anthony; Dominguez, Jason; Liu, Sheng; Subramania, Ganapathi S; Decker, Manuel; Neshev, Dragomir N; Brener, Igal; Kivshar, Yuri S

    2016-01-01

    Subwavelength-thin metasurfaces have shown great promises for the control of optical wavefronts, thus opening new pathways for the development of efficient flat optics. In particular, Huygens' metasurfaces based on all-dielectric resonant meta-atoms have already shown a huge potential for practical applications with their polarization insensitivity and high transmittance efficiency. Here, we experimentally demonstrate a polarization insensitive holographic Huygens' metasurface based on dielectric resonant meta-atoms capable of complex wavefront control at telecom wavelengths. Our metasurface produces a hologram image in the far-field with 82% transmittance efficiency and 40% imaging efficiency. Such efficient complex wavefront control shows that Huygens' metasurfaces based on resonant dielectric meta-atoms are a big step towards practical applications of metasurfaces in wavefront design related technologies, including computer-generated holograms, ultra-thin optics, security and data storage devices.

  14. On-Chip Scan-Based Test Strategy for a Dependable Many-Core Processor Using a NoC as a Test Access Mechanism

    NARCIS (Netherlands)

    Zhang, X.; Kerkhoff, Hans G.; Vermeulen, Bart

    2010-01-01

    Periodic on-chip scan-based tests have to be applied to a many-core processor SoC to improve its dependability. An infrastructural IP module has been designed and incorporated into the SoC to function as an ATE. This paper introduces the reuse of a Network-on-Chip as a test access mechanism. Since

  15. Pre-Allocation Based Flow Control Scheme for Networks-On-Chip

    Science.gov (United States)

    Lin, Shijun; Su, Li; Su, Haibo; Jin, Depeng; Zeng, Lieguang

    Based on the traffic predictability characteristic of Networks-on-Chip (NoC), we propose a pre-allocation based flow control scheme to improve the performance of NoC. In this scheme, routes are pre-allocated and the injection rates of all routes are regulated at the traffic sources according to the average available bandwidths in the links. Then, the number of packets in the network is decreased and thus, the congestion probability is reduced and the communication performance is improved. Simulation results show that this scheme greatly increases the throughput and cuts down the average latency with little area and energy overhead, compared with the switch-to-switch flow control scheme.

  16. Comparing laser interferometry and atom interferometry approaches to space-based gravitational-wave measurement

    Science.gov (United States)

    Ira Thorpe, James; Jennrich, Oliver; McNamara, Paul; Baker, John G.

    2012-07-01

    The science enabled by a space-based low-frequency gravitational-wave instrument is a high-priority objective of the international astronomy community. Mission concepts based on laser interferometry, such as the Laser Interferometer Space Antenna (LISA), have been thoroughly studied and determined to be capable of delivering significant science returns. Ongoing developments in laboratory atom interferometry techniques have inspired new gravitational-wave mission concepts. We present a comparative analysis of LISA-like light interferometer systems and atom interferometer systems for gravitational-wave detection. Specific attention is paid to the sources of instrumental noise that are most important for light interferometer systems. We find that the response to laser frequency noise is identical in light interferometer and atom interferometer systems and that similar mitigation strategies (e.g. multiple-arm interferometers) must be employed to reach interesting gravitational wave sensitivities. Response to acceleration of the optical platforms is slightly different, allowing smaller spacecraft separations in the atom interferometry approach, but the acceleration noise requirements are similar. Based on this analysis, we find no clear advantage of the atom interferometry approach over traditional laser interferometry.

  17. Intermolecular orientations in liquid acetonitrile: new insights based on diffraction measurements and all-atom simulations

    CERN Document Server

    Pothoczki, Szilvia

    2016-01-01

    Intermolecular correlations in liquid acetonitrile (CH3CN) have been revisited by calculating orientational correlation functions. In the present approach, hydrogen atoms are included, so that a concept applicable for molecules of (nearly) tetrahedral shape can be exploited. In this way molecular arrangements are elucidated not only for closest neighbours but also extending well beyond the first coordination sphere. Thus a complementary viewpoint is provided to the more popular dipole-dipole correlations. Our calculations are based on large structural models that were obtained by applying diffraction data and partial radial distribution functions from potential-based (all-atom) molecular dynamics simulation simultaneously, within the framework of the Reverse Monte Carlo method.

  18. Simple chip-based interfaces for on-line monitoring of supramolecular interactions by nano-ESI MS

    NARCIS (Netherlands)

    Brivio, M.; Oosterbroek, R.E.; Verboom, Willem; van den Berg, Albert; Reinhoudt, David

    2005-01-01

    Two simple interfaces were designed and realized, enabling on-line coupling of microfluidics reactor chips to a nanoflow electrospray ionization (NESI) time-of-flight (TOF) mass spectrometer (MS). The interfaces are based on two different approaches: a monolithically integrated design, in which

  19. PMMA to SU-8 Bonding for Polymer Based Lab-on -a-chip Systems with Integrated Optics

    DEFF Research Database (Denmark)

    Clausen, Bjarne

    2003-01-01

    An adhesive bonding technique for wafer-level sealing of SU-8 based lab-on-a-chip microsystems with integrated optical components is presented. Microfluidic channels and optical components, e.g. waveguides, are fabricated in cross-linked SU-8 and sealed with a Pyrex glass substrate by means...

  20. PMMA to SU-8 bonding for polymer based lab-on-a-chip systems with integrated optics

    DEFF Research Database (Denmark)

    Olsen, Brian Bilenberg; Nielsen, Theodor; Clausen, Bjarne Hans

    2004-01-01

    We present an adhesive bonding technique developed for SU-8 based "lab-on-a-chip"- systems with integrated optical components. Microfluidic channels and optical components (e.g. wave-guides) are defined in SU-8 photoresist on a Pyrex glass substrate. The microfluidic channels are sealed by a second...

  1. Chip-based CE for rapid separation of 8-aminopyrene-1,3,6-trisulfonic acid (APTS) derivatized glycans

    Czech Academy of Sciences Publication Activity Database

    Smejkal, Petr; Szekrényes, A.; Ryvolová, M.; Foret, František; Guttman, A.; Bek, F.; Macka, M.

    2010-01-01

    Roč. 22, č. 31 (2010), s. 3783-3786 ISSN 0173-0835 R&D Projects: GA MŠk MEB060821 Institutional research plan: CEZ:AV0Z40310501 Keywords : bioanalyzer * chip-based analysis * glycans Subject RIV: CB - Analytical Chemistry, Separation Impact factor: 3.569, year: 2010

  2. On-chip two-mode division multiplexing using tapered directional coupler-based mode multiplexer and demultiplexer

    DEFF Research Database (Denmark)

    Ding, Yunhong; Xu, Jing; Da Ros, Francesco

    2013-01-01

    Abstract: We demonstrate a novel on-chip two-mode division multiplexing circuit using a tapered directional coupler-based TE0&TE1 mode multiplexer and demultiplexer on the silicon-on-insulator platform. A low insertion loss (0.3 dB), low mode crosstalk (

  3. UW VLSI chip tester

    Science.gov (United States)

    McKenzie, Neil

    1989-12-01

    We present a design for a low-cost, functional VLSI chip tester. It is based on the Apple MacIntosh II personal computer. It tests chips that have up to 128 pins. All pin drivers of the tester are bidirectional; each pin is programmed independently as an input or an output. The tester can test both static and dynamic chips. Rudimentary speed testing is provided. Chips are tested by executing C programs written by the user. A software library is provided for program development. Tests run under both the Mac Operating System and A/UX. The design is implemented using Xilinx Logic Cell Arrays. Price/performance tradeoffs are discussed.

  4. Atomic and Molecular Physics Program

    Science.gov (United States)

    2013-03-05

    Atomic Quantum Memories in Nano-Scale Optical Circuits: Jeff Kimble, Oskar Painter (CalTech) • Demonstration of a nanofiber atom trap: A. Goban...et al, Phys. Rev. Lett. 109, 033603 (2012) • Cavity QED with atomic mirrors: D. Chang, et al, N. J. Phys. 14, 063003 (2012) • Fiber -coupled chip... PMMA -diamond hybrid cavities, coupling stable NV centers • Cavity Optomechanics with Cold Atoms: Dan Stamper-Kurn (UC Berkeley) • Squeezed light

  5. Initiating heavy-atom-based phasing by multi-dimensional molecular replacement.

    Science.gov (United States)

    Pedersen, Bjørn Panyella; Gourdon, Pontus; Liu, Xiangyu; Karlsen, Jesper Lykkegaard; Nissen, Poul

    2016-03-01

    To obtain an electron-density map from a macromolecular crystal the phase problem needs to be solved, which often involves the use of heavy-atom derivative crystals and concomitant heavy-atom substructure determination. This is typically performed by dual-space methods, direct methods or Patterson-based approaches, which however may fail when only poorly diffracting derivative crystals are available. This is often the case for, for example, membrane proteins. Here, an approach for heavy-atom site identification based on a molecular-replacement parameter matrix (MRPM) is presented. It involves an n-dimensional search to test a wide spectrum of molecular-replacement parameters, such as different data sets and search models with different conformations. Results are scored by the ability to identify heavy-atom positions from anomalous difference Fourier maps. The strategy was successfully applied in the determination of a membrane-protein structure, the copper-transporting P-type ATPase CopA, when other methods had failed to determine the heavy-atom substructure. MRPM is well suited to proteins undergoing large conformational changes where multiple search models should be considered, and it enables the identification of weak but correct molecular-replacement solutions with maximum contrast to prime experimental phasing efforts.

  6. Development of collisional data base for elementary processes of electron scattering by atoms and molecules

    Energy Technology Data Exchange (ETDEWEB)

    Marinković, Bratislav P., E-mail: bratislav.marinkovic@ipb.ac.rs [Institute of Physics, University of Belgrade, Pregrevica 118, 11080 Belgrade (Serbia); School of Electrical and Computer Engineering of Applied Studies, Vojvode Stepe 283, 11000 Belgrade (Serbia); Vujčić, Veljko [Astronomical Observatory Belgade, Volgina 7, 11050 Belgrade (Serbia); Faculty of Organizational Sciences, University of Belgrade, Jove Ilića 154, 11000 Belgrade (Serbia); Sushko, Gennady [MBN Research Center, Altenhöferallee 3, 60438 Frankfurt am Main (Germany); Vudragović, Dušan [Institute of Physics, University of Belgrade, Pregrevica 118, 11080 Belgrade (Serbia); Marinković, Dara B. [Faculty of Organizational Sciences, University of Belgrade, Jove Ilića 154, 11000 Belgrade (Serbia); Đorđević, Stefan; Ivanović, Stefan; Nešić, Milutin [School of Electrical and Computer Engineering of Applied Studies, Vojvode Stepe 283, 11000 Belgrade (Serbia); Jevremović, Darko [Astronomical Observatory Belgade, Volgina 7, 11050 Belgrade (Serbia); Solov’yov, Andrey V. [MBN Research Center, Altenhöferallee 3, 60438 Frankfurt am Main (Germany); Mason, Nigel J. [The Open University, Department of Physical Sciences, Walton Hall, Milton Keynes MK7 6AA (United Kingdom)

    2015-07-01

    Highlights: • BEAMDB database maintaining electron/atom-molecule collisional data has been created. • The DB is MySQL, the web server is Nginx and Python application server is Gunicorn. • Only data that have been previously published and formally refereed are included. • Data protocol for exchanging and representing data is in the “xsams” xml format. • BEAMDB becomes a node within the VAMDC consortium and radiation damage RADAM basis. - Abstract: We present a progress report on the development of the Belgrade electron/molecule data base which is hosted by The Institute of Physics, University of Belgrade and The Astronomical Observatory Belgrade. The data base has been developed under the standards of Virtual Atomic Molecular Data Centre (VAMDC) project which provides a common portal for several European data bases that maintain atomic and molecular data. The Belgrade data base (BEAMDB) covers collisional data of electron interactions with atoms and molecules in the form of differential (DCS) and integrated cross sections as well as energy loss spectra. The final goal of BEAMDB becoming both a node within the VAMDC consortium and within the radiation damage RADAM data base has been achieved.

  7. Atom counting in HAADF STEM using a statistical model-based approach: methodology, possibilities, and inherent limitations.

    Science.gov (United States)

    De Backer, A; Martinez, G T; Rosenauer, A; Van Aert, S

    2013-11-01

    In the present paper, a statistical model-based method to count the number of atoms of monotype crystalline nanostructures from high resolution high-angle annular dark-field (HAADF) scanning transmission electron microscopy (STEM) images is discussed in detail together with a thorough study on the possibilities and inherent limitations. In order to count the number of atoms, it is assumed that the total scattered intensity scales with the number of atoms per atom column. These intensities are quantitatively determined using model-based statistical parameter estimation theory. The distribution describing the probability that intensity values are generated by atomic columns containing a specific number of atoms is inferred on the basis of the experimental scattered intensities. Finally, the number of atoms per atom column is quantified using this estimated probability distribution. The number of atom columns available in the observed STEM image, the number of components in the estimated probability distribution, the width of the components of the probability distribution, and the typical shape of a criterion to assess the number of components in the probability distribution directly affect the accuracy and precision with which the number of atoms in a particular atom column can be estimated. It is shown that single atom sensitivity is feasible taking the latter aspects into consideration. © 2013 Elsevier B.V. All rights reserved.

  8. Chalcogenide based rib waveguide for compact on-chip supercontinuum sources in mid-infrared domain

    Science.gov (United States)

    Saini, Than Singh; Tiwari, Umesh Kumar; Sinha, Ravindra Kumar

    2017-08-01

    We have designed and analysed a rib waveguide structure in recently reported Ga-Sb-S based highly nonlinear chalcogenide glass for nonlinear applications. The proposed waveguide structure possesses a very high nonlinear coefficient and can be used to generate broadband supercontinuum in mid-infrared domain. The reported design of the chalcogenide waveguide offers two zero dispersion values at 1800 nm and 2900 nm. Such rib waveguide structure is suitable to generate efficient supercontinuum generation ranging from 500 - 7400 μm. The reported waveguide can be used for the realization of the compact on-chip supercontinuum sources which are highly applicable in optical imaging, optical coherence tomography, food quality control, security and sensing.

  9. Healthcare Chip Based on Integrated Electrochemical Sensors Used for Clinical Diagnostics of Bun

    Science.gov (United States)

    Chang, Chia‑Hsien; Ogawa, Hiroki; Oki, Akio; Takai, Madoka; Nagai, Masao; Hisamoto, Hideaki; Horiike, Yasuhiro

    2006-05-01

    Research based on health marker sensors, such as Na+, glucose, K+ have been carried out using integrated ISE (ion selectivity electrode). In this study, focus has been placed on potentiometric measurement of ammonia and blood urea nitrogen (BUN) sensors using new 19-membered crown ionophore, TD19C6 (2,6,13,16,23,26-hexaoxaheptacyclo-[25.4.4.4 7,12.4 17,22.O 1,17.O 7,12.O 17.22]), poly(vinyl chloride) (PVC) membranes along with anionic additives, potassium tetrakis(4-chlorophenyl)borate (k-TCPB), sodium tetrakis(4-fluorophenyl)borate dehydrate (TFPB), and plasticizers, bis(1-butylphenyl)adipate (BBPA) and tris(2-ethylhexyl)trimellitate (TOTM). Screen-printed electrodes Ag/AgCl (250 mm in diameter) and a disposable polycarbonate chip (PC) designed using a trace amount of whole blood are also used.

  10. An area-efficient network interface for a TDM-based Network-on-Chip

    DEFF Research Database (Denmark)

    Sparsø, Jens; Kasapaki, Evangelia; Schoeberl, Martin

    2013-01-01

    Network interfaces (NIs) are used in multi-core systems where they connect processors, memories, and other IP-cores to a packet switched Network-on-Chip (NOC). The functionality of a NI is to bridge between the read/write transaction interfaces used by the cores and the packet-streaming interface...... used by the routers and links in the NOC. The paper addresses the design of a NI for a NOC that uses time division multiplexing (TDM). By keeping the essence of TDM in mind, we have developed a new area-efficient NI micro-architecture. The new design completely eliminates the need for FIFO buffers...... and credit based flow control - resources which are reported to account for 50–85% of the area in existing NI designs. The paper discusses the design considerations, presents the new NI micro-architecture, and reports area figures for a range of implementations....

  11. Determination of Trace Elements in Nickel Base Gas Turbine Parts by Atomic Absorption Spectrophotometry.

    Science.gov (United States)

    An investigation is described to ascertain whether or not atomic absorption spectrophotometry could be used to determine the concentration of trace ... elements such as silver (Ag), bismuth (Bi), cadmium (Cd), and lead (Pb) in nickel base alloys such as IN100, B1900 and 713C, without interference from

  12. Rubidium atomic beam clock based on lamp-pumping and fluorescence-detection scheme

    Science.gov (United States)

    Wang, Y. H.; Huang, J. Q.; Gu, Y.; Liu, S. Q.; Dong, T. Q.; Lu, Z. H.

    2011-02-01

    A compact, portable rubidium atomic beam clock based on lamp-pumping and fluorescence-detection scheme is proposed. The expected short-term frequency stability can be at least two orders of magnitude better than previous experimental results. The usages of lamp pumping, fluorescence detection and microwave slow-wave resonance structures make this design robust and compact.

  13. [Atomic force microscopy fishing of gp120 on immobilized aptamer and its mass spectrometry identification].

    Science.gov (United States)

    Bukharina, N S; Ivanov, Yu D; Pleshakova, T O; Frantsuzov, P A; Andreeva, E Yu; Kaysheva, A L; Izotov, A A; Pavlova, T I; Ziborov, V S; Radko, S P; Archakov, A I

    2015-01-01

    A method of atomic force microscopy-based fishing (AFM fishing) has been developed for protein detection in the analyte solution using a chip with an immobilized aptamer. This method is based on the biospecific fishing of a target protein from a bulk solution onto the small AFM chip area with the immobilized aptamer to this protein used as the molecular probe. Such aptamer-based approach allows to increase an AFM image contrast compared to the antibody-based approach. Mass spectrometry analysis used after the biospecific fishing to identify the target protein on the AFM chip has proved complex formation. Use of the AFM chip with the immobilized aptamer avoids interference of the antibody and target protein peaks in a mass spectrum.

  14. Accelerating Atomic Orbital-based Electronic Structure Calculation via Pole Expansion plus Selected Inversion

    Energy Technology Data Exchange (ETDEWEB)

    Lin, Lin; Chen, Mohan; Yang, Chao; He, Lixin

    2012-02-10

    We describe how to apply the recently developed pole expansion plus selected inversion (PEpSI) technique to Kohn-Sham density function theory (DFT) electronic structure calculations that are based on atomic orbital discretization. We give analytic expressions for evaluating charge density, total energy, Helmholtz free energy and atomic forces without using the eigenvalues and eigenvectors of the Kohn-Sham Hamiltonian. We also show how to update the chemical potential without using Kohn-Sham eigenvalues. The advantage of using PEpSI is that it has a much lower computational complexity than that associated with the matrix diagonalization procedure. We demonstrate the performance gain by comparing the timing of PEpSI with that of diagonalization on insulating and metallic nanotubes. For these quasi-1D systems, the complexity of PEpSI is linear with respect to the number of atoms. This linear scaling can be observed in our computational experiments when the number of atoms in a nanotube is larger than a few hundreds. Both the wall clock time and the memory requirement of PEpSI is modest. This makes it even possible to perform Kohn-Sham DFT calculations for 10,000-atom nanotubes on a single processor. We also show that the use of PEpSI does not lead to loss of accuracy required in a practical DFT calculation.

  15. C-C Coupling on Single-Atom-Based Heterogeneous Catalyst.

    Science.gov (United States)

    Zhang, Xiaoyan; Sun, Zaicheng; Wang, Bin; Tang, Yu; Nguyen, Luan; Li, Yuting; Tao, Franklin Feng

    2018-01-24

    Compared to homogeneous catalysis, heterogeneous catalysis allows for ready separation of products from the catalyst and thus reuse of the catalyst. C-C coupling is typically performed on a molecular catalyst which is mixed with reactants in liquid phase during catalysis. This homogeneous mixing at a molecular level in the same phase makes separation of the molecular catalyst extremely challenging and costly. Here we demonstrated that a TiO 2 -based nanoparticle catalyst anchoring singly dispersed Pd atoms (Pd 1 /TiO 2 ) is selective and highly active for more than 10 Sonogashira C-C coupling reactions (R≡CH + R'X → R≡R'; X = Br, I; R' = aryl or vinyl). The coupling between iodobenzene and phenylacetylene on Pd 1 /TiO 2 exhibits a turnover rate of 51.0 diphenylacetylene molecules per anchored Pd atom per minute at 60 °C, with a low apparent activation barrier of 28.9 kJ/mol and no cost of catalyst separation. DFT calculations suggest that the single Pd atom bonded to surface lattice oxygen atoms of TiO 2 acts as a site to dissociatively chemisorb iodobenzene to generate an intermediate phenyl, which then couples with phenylacetylenyl bound to a surface oxygen atom. This coupling of phenyl adsorbed on Pd 1 and phenylacetylenyl bound to O ad of TiO 2 forms the product molecule, diphenylacetylene.

  16. A Polarizable Atomic Multipole-Based Force Field for Molecular Dynamics Simulations of Anionic Lipids.

    Science.gov (United States)

    Chu, Huiying; Peng, Xiangda; Li, Yan; Zhang, Yuebin; Li, Guohui

    2017-12-31

    In all of the classical force fields, electrostatic interaction is simply treated and explicit electronic polarizability is neglected. The condensed-phase polarization, relative to the gas-phase charge distributions, is commonly accounted for in an average way by increasing the atomic charges, which remain fixed throughout simulations. Based on the lipid polarizable force field DMPC and following the same framework as Atomic Multipole Optimized Energetics for BiomoleculAr (AMOEBA) simulation, the present effort expands the force field to new anionic lipid models, in which the new lipids contain DMPG and POPS. The parameters are compatible with the AMOEBA force field, which includes water, ions, proteins, etc. The charge distribution of each atom is represented by the permanent atomic monopole, dipole and quadrupole moments, which are derived from the ab initio gas phase calculations. Many-body polarization including the inter- and intramolecular polarization is modeled in a consistent manner with distributed atomic polarizabilities. Molecular dynamics simulations of the two aqueous DMPG and POPS membrane bilayer systems, consisting of 72 lipids with water molecules, were then carried out to validate the force field parameters. Membrane width, area per lipid, volume per lipid, deuterium order parameters, electron density profile, electrostatic potential difference between the center of the bilayer and water are all calculated, and compared with limited experimental data.

  17. Avoiding Message-Dependent Deadlock in Network-Based Systems on Chip

    NARCIS (Netherlands)

    Hansson, A.; Goossens, K.; Rãdulescu, A.

    2007-01-01

    Networks on chip (NoCs) are an essential component of systems on chip (SoCs) and much research is devoted to deadlock avoidance in NoCs. Prior work focuses on the router network while protocol interactions between NoC and intellectual property (IP) modules are not considered. These interactions

  18. A photonic chip based frequency discriminator for a high performance microwave photonic link

    NARCIS (Netherlands)

    Marpaung, D.A.I.; Roeloffzen, C.G.H.; Leinse, Arne; Hoekman, M.

    2010-01-01

    We report a high performance phase modulation direct detection microwave photonic link employing a photonic chip as a frequency discriminator. The photonic chip consists of five optical ring resonators (ORRs) which are fully programmable using thermo-optical tuning. In this discriminator a drop-port

  19. Single-Chip Computers With Microelectromechanical Systems-Based Magnetic Memory

    NARCIS (Netherlands)

    Carley, L. Richard; Bain, James A.; Fedder, Gary K.; Greve, David W.; Guillou, David F.; Lu, Michael S.C.; Mukherjee, Tamal; Santhanam, Suresh; Abelmann, Leon; Min, Seungook

    This article describes an approach for implementing a complete computer system (CPU, RAM, I/O, and nonvolatile mass memory) on a single integrated-circuit substrate (a chip)—hence, the name "single-chip computer." The approach presented combines advances in the field of microelectromechanical

  20. Hybrid statistics-simulations based method for atom-counting from ADF STEM images.

    Science.gov (United States)

    De Wael, Annelies; De Backer, Annick; Jones, Lewys; Nellist, Peter D; Van Aert, Sandra

    2017-06-01

    A hybrid statistics-simulations based method for atom-counting from annular dark field scanning transmission electron microscopy (ADF STEM) images of monotype crystalline nanostructures is presented. Different atom-counting methods already exist for model-like systems. However, the increasing relevance of radiation damage in the study of nanostructures demands a method that allows atom-counting from low dose images with a low signal-to-noise ratio. Therefore, the hybrid method directly includes prior knowledge from image simulations into the existing statistics-based method for atom-counting, and accounts in this manner for possible discrepancies between actual and simulated experimental conditions. It is shown by means of simulations and experiments that this hybrid method outperforms the statistics-based method, especially for low electron doses and small nanoparticles. The analysis of a simulated low dose image of a small nanoparticle suggests that this method allows for far more reliable quantitative analysis of beam-sensitive materials. Copyright © 2017 Elsevier B.V. All rights reserved.

  1. Speckle reduction in optical coherence tomography images based on wave atoms

    Science.gov (United States)

    Du, Yongzhao; Liu, Gangjun; Feng, Guoying; Chen, Zhongping

    2014-01-01

    Abstract. Optical coherence tomography (OCT) is an emerging noninvasive imaging technique, which is based on low-coherence interferometry. OCT images suffer from speckle noise, which reduces image contrast. A shrinkage filter based on wave atoms transform is proposed for speckle reduction in OCT images. Wave atoms transform is a new multiscale geometric analysis tool that offers sparser expansion and better representation for images containing oscillatory patterns and textures than other traditional transforms, such as wavelet and curvelet transforms. Cycle spinning-based technology is introduced to avoid visual artifacts, such as Gibbs-like phenomenon, and to develop a translation invariant wave atoms denoising scheme. The speckle suppression degree in the denoised images is controlled by an adjustable parameter that determines the threshold in the wave atoms domain. The experimental results show that the proposed method can effectively remove the speckle noise and improve the OCT image quality. The signal-to-noise ratio, contrast-to-noise ratio, average equivalent number of looks, and cross-correlation (XCOR) values are obtained, and the results are also compared with the wavelet and curvelet thresholding techniques. PMID:24825507

  2. Support effects on adsorption and catalytic activation of O2in single atom iron catalysts with graphene-based substrates.

    Science.gov (United States)

    Gao, Zheng-Yang; Yang, Wei-Jie; Ding, Xun-Lei; Lv, Gang; Yan, Wei-Ping

    2018-02-27

    The adsorption and catalytic activation of O 2 on single atom iron catalysts with graphene-based substrates were investigated systematically by density functional theory calculation. It is found that the support effects of graphene-based substrates have a significant influence on the stability of the single atom catalysts, the adsorption configuration, the electron transfer mechanism, the adsorption energy and the energy barrier. The differences in the stable adsorption configuration of O 2 on single atom iron catalysts with different graphene-based substrates can be well understood by the symmetrical matching principle based on frontier molecular orbital analysis. There are two different mechanisms of electron transfer, in which the Fe atom acts as the electron donor in single vacancy graphene-based substrates while the Fe atom mainly acts as the bridge for electron transfer in double vacancy graphene-based substrates. The Fermi softness and work function are good descriptors of the adsorption energy and they can well reveal the relationship between electronic structure and adsorption energy. This single atom iron catalyst with single vacancy graphene modified by three nitrogen atoms is a promising non-noble metal single atom catalyst in the adsorption and catalytic oxidation of O 2 . Furthermore, the findings can lay the foundation for the further study of graphene-based support effects and provide a guideline for the development and design of new non-noble-metal single atom catalysts.

  3. ID-SERS Based Reference Method for Quantification of Large Biomolecules on a Single Chip

    Science.gov (United States)

    Yaghobian, Fatemeh; Stosch, Rainer; Henrion, André; Güttler, Bernd

    2010-08-01

    Accuracy and precision of quantitative SERS results have been significantly increased by applying a method based on the so-called isotope-dilution (ID) principle. In this ID-SERS approach, an isotopically labeled analogue of the target molecule (isotopologue) is spiked to the sample at a known concentration. Due to the slight difference in their molar masses, some Raman bands of the heavier isotopologue are red-shifted with respect to the same signals resulting from the unlabelled compound. As a result, spectra evaluation is reduced to the determination of intensity ratios rather than absolute intensities, and the unknown quantity of the analyte can be calculated from the known quantity of the standard. This procedure is of particular interest in the development of highly accurate reference procedures for metrology in chemistry. Because the sample is spiked prior to any further treatment, potential loss of material or matrix effects would equally affect both isotopologues, without influencing the final result. The method has been successfully applied for quantifying small diagnostic marker molecules like creatinine at their relevant serum concentration levels using silver colloids as SERS substrates. Now, the ID-SERS approach has been realized as a "one-chip" approach using "Bio-chips" made of intrinsically grown spherical silver nanoparticles with gaps less than 10 nm in between (Fig. 1). In addition, the scope of the method has been extended to larger biomolecules like peptides which will be shown using the example of the human growth-hormone (hGH) peptide T12 at physiologically relevant serum concentration levels (Fig. 2). Further developments towards the quantification of full proteins will also be reported.

  4. An Enclosed Paper Microfluidic Chip as a Sample Preconcentrator Based on Ion Concentration Polarization.

    Science.gov (United States)

    Liu, Ning; Phan, Dinh-Tuan; Lew, Wen Siang

    2017-12-01

    Sensitivity is an essential consideration for microfluidic paper-based analytical devices (μPADs) when these devices are used for low concentration sample detection. Very recently, ion concentration polarization (ICP)-based μPADs are emerging as novel tools for bio-sample preconcentration. In this study, we develop an enclosed paper-based microfluidic platform as a preconcentrator based on the ICP effect. This paper chip is fabricated by a Parafilm embedding technique and holds many advantages over traditional open-channel μPADs, which usually suffer from sample contamination and evaporation problems. The enclosed structure minimizes sample evaporation, reduces contamination risk, and increases the mechanical strength of the paper channel. The experiment results show that more than 100-fold concentration enhancement can be achieved in the enclosed paper device, which is comparable with most reported paper-based ICP devices. Additionally, other improved ICP performance has been observed on the enclosed device, including better concentration plug profile, increased concentration durability.

  5. A 3D Microfluidic Chip for Electrochemical Detection of Hydrolysed Nucleic Bases by a Modified Glassy Carbon Electrode

    Directory of Open Access Journals (Sweden)

    Jana Vlachova

    2015-01-01

    Full Text Available Modification of carbon materials, especially graphene-based materials, has wide applications in electrochemical detection such as electrochemical lab-on-chip devices. A glassy carbon electrode (GCE modified with chemically alternated graphene oxide was used as a working electrode (glassy carbon modified by graphene oxide with sulphur containing compounds and Nafion for detection of nucleobases in hydrolysed samples (HCl pH = 2.9, 100 °C, 1 h, neutralization by NaOH. It was found out that modification, especially with trithiocyanuric acid, increased the sensitivity of detection in comparison with pure GCE. All processes were finally implemented in a microfluidic chip formed with a 3D printer by fused deposition modelling technology. As a material for chip fabrication, acrylonitrile butadiene styrene was chosen because of its mechanical and chemical stability. The chip contained the one chamber for the hydrolysis of the nucleic acid and another for the electrochemical detection by the modified GCE. This chamber was fabricated to allow for replacement of the GCE.

  6. Chip-based impedance measurement on single cells for monitoring sub-toxic effects on cell membranes.

    Science.gov (United States)

    Kurz, Christian M; Büth, Heiko; Sossalla, Adam; Vermeersch, Vincent; Toncheva, Veska; Dubruel, Peter; Schacht, Etienne; Thielecke, Hagen

    2011-04-15

    There is a lack of methods suitable for generation of data about the dynamics of effects on cell membranes with a high sensitivity. Such methods are urgently needed to support the optimisation of interaction of substances, particles or materials with cell. The goal of this article is to use an improved microhole chip system to monitor the alterations of cells due to the interactions of polymer-DNA complexes. This should demonstrate exemplarily that subtoxic effect of biological relevant particles or substances at relevant concentrations can be monitored for several hours. By using a microhole cell chip and a microfluidic unit single cells can be electrically interfaced via microholes and the use of small electrodes with high impedances is not necessary. For separation and positioning of the cells onto the hole negative pressure is applied on the reverse side of the chip. Under cell culture conditions the cell starts to spread on the biocompatible insulating chip membrane resulting in a stable interface to an adherent growing cell. After the spreading process is finished, the polymer/polyplex solution is added and the impedance is measured with respect to time. To illustrate the cellular parameter which can affect the measured impedance a simple simulation based on the finite element method (FEM) is performed. It was shown for the first time that the impedance-based method predicated on the microhole chip can be used for biological relevant substances at relevant concentrations and that it is more sensitive than the well-established biological marker. Copyright © 2011 Elsevier B.V. All rights reserved.

  7. Phase change material based tunable reflectarray for free-space optical inter/intra chip interconnects.

    Science.gov (United States)

    Zou, Longfang; Cryan, Martin; Klemm, Maciej

    2014-10-06

    The concept of phase change material (PCM) based optical antennas and antenna arrays is proposed for dynamic beam shaping and steering utilized in free-space optical inter/intra chip interconnects. The essence of this concept lies in the fact that the behaviour of PCM based optical antennas will change due to the different optical properties of the amorphous and crystalline state of the PCM. By engineering optical antennas or antenna arrays, it is feasible to design dynamic optical links in a desired manner. In order to illustrate this concept, a PCM based tunable reflectarray is proposed for a scenario of a dynamic optical link between a source and two receivers. The designed reflectarray is able to switch the optical link between two receivers by switching the two states of the PCM. Two types of antennas are employed in the proposed tunable reflectarray to achieve full control of the wavefront of the reflected beam. Numerical studies show the expected binary beam steering at the optical communication wavelength of 1.55 μm. This study suggests a new research area of PCM based optical antennas and antenna arrays for dynamic optical switching and routing.

  8. Lab-on-a-chip based immunosensor principles and technologies for the detection of cardiac biomarkers: a review.

    Science.gov (United States)

    Mohammed, Mazher-Iqbal; Desmulliez, Marc P Y

    2011-02-21

    This review examines the current state of the art lab-on-a-chip and microfluidic based biosensor technologies used in the detection of cardiac biomarkers. The determination and quantification of blood based, cardiac biomarkers are crucial in the triage and management of a range of cardiac related conditions, where time delay has a major impact on short and longer-term outcomes of a patient. The design and manufacturing of biomarker detection systems are multi-disciplinary in nature and require researchers to have knowledge of both life sciences and engineering for the full potential of this field to be realised. This review will therefore provide a comprehensive overview of chip based immunosensing technology as applied to cardiac biomarker detection, while discussing the potential suitability and limitations of each configuration for incorporation within a clinical diagnostics device suitable for point-of-care applications.

  9. THE CHIPS SHAPES AT THE BEECH WOODTURNING

    Directory of Open Access Journals (Sweden)

    Iulian POPESCU

    2015-05-01

    Full Text Available we did research on the process of beech woodturning with low cutting speed. We studied the different chip shapes resulted for different feeds. Based on chip shapes, the phenomena that occur in the cutting area were interpreted by the theory of woodturning. It was found that broken chips occur and the variable hardness of some areas on the workingpiece determined forming of smaller flowing chips. We give the resulting images of the chips which are then analysed and commented.

  10. Simulation-based Modeling Frameworks for Networked Multi-processor System-on-Chip

    DEFF Research Database (Denmark)

    Mahadevan, Shankar

    2006-01-01

    This thesis deals with modeling aspects of multi-processor system-on-chip (MpSoC) design affected by the on-chip interconnect, also called the Network-on-Chip (NoC), at various levels of abstraction. To begin with, we undertook a comprehensive survey of research and design practices of networked Mp......: namely ARTS and RIPE, that allows to model hardware (computation time, power consumption, network latency, caching effect, etc.) and software (application partition and mapping, operating system scheduling, interrupt handling, etc.) aspects from system-level to cycle-true abstraction. Thereby, we can...

  11. Modern Focused-Ion-Beam-Based Site-Specific Specimen Preparation for Atom Probe Tomography.

    Science.gov (United States)

    Prosa, Ty J; Larson, David J

    2017-04-01

    Approximately 30 years after the first use of focused ion beam (FIB) instruments to prepare atom probe tomography specimens, this technique has grown to be used by hundreds of researchers around the world. This past decade has seen tremendous advances in atom probe applications, enabled by the continued development of FIB-based specimen preparation methodologies. In this work, we provide a short review of the origin of the FIB method and the standard methods used today for lift-out and sharpening, using the annular milling method as applied to atom probe tomography specimens. Key steps for enabling correlative analysis with transmission electron-beam backscatter diffraction, transmission electron microscopy, and atom probe tomography are presented, and strategies for preparing specimens for modern microelectronic device structures are reviewed and discussed in detail. Examples are used for discussion of the steps for each of these methods. We conclude with examples of the challenges presented by complex topologies such as nanowires, nanoparticles, and organic materials.

  12. Lattice and strain analysis of atomic resolution Z-contrast images based on template matching

    Energy Technology Data Exchange (ETDEWEB)

    Zuo, Jian-Min, E-mail: jianzuo@uiuc.edu [Department of Materials Science and Engineering, University of Illinois, Urbana, IL 61801 (United States); Seitz Materials Research Laboratory, University of Illinois, Urbana, IL 61801 (United States); Shah, Amish B. [Center for Microanalysis of Materials, Materials Research Laboratory, University of Illinois at Urbana-Champaign, Urbana, IL 61801 (United States); Kim, Honggyu; Meng, Yifei; Gao, Wenpei [Department of Materials Science and Engineering, University of Illinois, Urbana, IL 61801 (United States); Seitz Materials Research Laboratory, University of Illinois, Urbana, IL 61801 (United States); Rouviére, Jean-Luc [CEA-INAC/UJF-Grenoble UMR-E, SP2M, LEMMA, Minatec, Grenoble 38054 (France)

    2014-01-15

    A real space approach is developed based on template matching for quantitative lattice analysis using atomic resolution Z-contrast images. The method, called TeMA, uses the template of an atomic column, or a group of atomic columns, to transform the image into a lattice of correlation peaks. This is helped by using a local intensity adjusted correlation and by the design of templates. Lattice analysis is performed on the correlation peaks. A reference lattice is used to correct for scan noise and scan distortions in the recorded images. Using these methods, we demonstrate that a precision of few picometers is achievable in lattice measurement using aberration corrected Z-contrast images. For application, we apply the methods to strain analysis of a molecular beam epitaxy (MBE) grown LaMnO{sub 3} and SrMnO{sub 3} superlattice. The results show alternating epitaxial strain inside the superlattice and its variations across interfaces at the spatial resolution of a single perovskite unit cell. Our methods are general, model free and provide high spatial resolution for lattice analysis. - Highlights: • A real space approach is developed for strain analysis using atomic resolution Z-contrast images and template matching. • A precision of few picometers is achievable in the measurement of lattice displacements. • The spatial resolution of a single perovskite unit cell is demonstrated for a LaMnO{sub 3} and SrMnO{sub 3} superlattice grown by MBE.

  13. Absolute number densities of helium metastable atoms determined by atomic absorption spectroscopy in helium plasma-based discharges used as ambient desorption/ionization sources for mass spectrometry

    Energy Technology Data Exchange (ETDEWEB)

    Reininger, Charlotte; Woodfield, Kellie [Brigham Young University, Department of Chemistry and Biochemistry, Provo, UT 84602 (United States); Keelor, Joel D.; Kaylor, Adam; Fernández, Facundo M. [Georgia Institute of Technology, School of Chemistry and Biochemistry, Atlanta, GA 30332 (United States); Farnsworth, Paul B., E-mail: paul_farnsworth@byu.edu [Brigham Young University, Department of Chemistry and Biochemistry, Provo, UT 84602 (United States)

    2014-10-01

    The absolute number densities of helium atoms in the 2s {sup 3}S{sub 1} metastable state were determined in four plasma-based ambient desorption/ionization sources by atomic absorption spectroscopy. The plasmas included a high-frequency dielectric barrier discharge (HF-DBD), a low temperature plasma (LTP), and two atmospheric-pressure glow discharges, one with AC excitation and the other with DC excitation. Peak densities in the luminous plumes downstream from the discharge capillaries of the HF-DBD and the LTP were 1.39 × 10{sup 12} cm{sup −3} and 0.011 × 10{sup 12} cm{sup −3}, respectively. Neither glow discharge produced a visible afterglow, and no metastable atoms were detected downstream from the capillary exits. However, densities of 0.58 × 10{sup 12} cm{sup −3} and 0.97 × 10{sup 12} cm{sup −3} were measured in the interelectrode regions of the AC and DC glow discharges, respectively. Time-resolved measurements of metastable atom densities revealed significant random variations in the timing of pulsed absorption signals with respect to the voltage waveforms applied to the discharges. - Highlights: • We determine He metastable number densities for four plasma types • The highest number densities were observed in a dielectric barrier discharge • No helium metastable atoms were observed downstream from the exits of glow discharges.

  14. Comparing Laser Interferometry and Atom Interferometry Approaches to Space-Based Gravitational-Wave Measurement

    Science.gov (United States)

    Baker, John; Thorpe, Ira

    2012-01-01

    Thoroughly studied classic space-based gravitational-wave missions concepts such as the Laser Interferometer Space Antenna (LISA) are based on laser-interferometry techniques. Ongoing developments in atom-interferometry techniques have spurred recently proposed alternative mission concepts. These different approaches can be understood on a common footing. We present an comparative analysis of how each type of instrument responds to some of the noise sources which may limiting gravitational-wave mission concepts. Sensitivity to laser frequency instability is essentially the same for either approach. Spacecraft acceleration reference stability sensitivities are different, allowing smaller spacecraft separations in the atom interferometry approach, but acceleration noise requirements are nonetheless similar. Each approach has distinct additional measurement noise issues.

  15. Testing general relativity and alternative theories of gravity with space-based atomic clocks and atom interferometers

    Directory of Open Access Journals (Sweden)

    Bondarescu Ruxandra

    2015-01-01

    Full Text Available The successful miniaturisation of extremely accurate atomic clocks and atom interferometers invites prospects for satellite missions to perform precision experiments. We discuss the effects predicted by general relativity and alternative theories of gravity that can be detected by a clock, which orbits the Earth. Our experiment relies on the precise tracking of the spacecraft using its observed tick-rate. The spacecraft’s reconstructed four-dimensional trajectory will reveal the nature of gravitational perturbations in Earth’s gravitational field, potentially differentiating between different theories of gravity. This mission can measure multiple relativistic effects all during the course of a single experiment, and constrain the Parametrized Post-Newtonian Parameters around the Earth. A satellite carrying a clock of fractional timing inaccuracy of Δ f / f ∼ 10−16 in an elliptic orbit around the Earth would constrain the PPN parameters |β − 1|, |γ − 1| ≲ 10−6. We also briefly review potential constraints by atom interferometers on scalar tensor theories and in particular on Chameleon and dilaton models.

  16. A portable lab-on-a-chip instrument based on MCE with dual topbottom capacitive coupled contactless conductivity detector in replaceable cell cartridge

    OpenAIRE

    Ansari Kambiz; Ying Jasmine Yuen Shu; Hauser Peter C.; de Rooij Nico F.; Rodriguez Isabel

    2013-01-01

    A new design for a compact portable lab on a chip instrument based on MCE and dual ca pacitively coupled contactless conductivity detection (dC4D) is described. The instrument is battery powered with total dimension of 14 × 25 × 8 cm3 (w × l × h) and weighs 1.2 kg. The device consists of a front electrophoresis compartment which has the chip holder and the chip the associated high voltage electrodes for electrophoresis injection and separation and the detector. The detection cell is integrat...

  17. Patterned Fibers Embedded Microfluidic Chips Based on PLA and PDMS for Ag Nanoparticle Safety Testing

    Directory of Open Access Journals (Sweden)

    Yaowen Liu

    2016-11-01

    Full Text Available A new method to integrate poly-dl-lactide (PLA patterned electrospun fibers with a polydimethylsiloxane (PDMS microfluidic chip was successfully developed via lithography. Hepatocyte behavior under static and dynamic conditions was investigated. Immunohistochemical analyses indicated good hepatocyte survival under the dynamic culture system with effective hepatocyte spheroid formation in the patterned microfluidic chip vs. static culture conditions and tissue culture plate (TCP. In particular, hepatocytes seeded in this microfluidic chip under a flow rate of 10 μL/min could re-establish hepatocyte polarity to support biliary excretion and were able to maintain high levels of albumin and urea secretion over 15 days. Furthermore, the optimized system could produce sensitive and consistent responses to nano-Ag-induced hepatotoxicity during culture. Thus, this microfluidic chip device provides a new means of fabricating complex liver tissue-engineered scaffolds, and may be of considerable utility in the toxicity screening of nanoparticles.

  18. A Lab-on-a-Chip-Based Non-Invasive Optical Sensor for Measuring Glucose in Saliva

    OpenAIRE

    Jung, Dong Geon; Jung, Daewoong; Kong, Seong Ho

    2017-01-01

    A lab-on-a-chip (LOC)-based non-invasive optical sensor for measuring glucose in saliva was fabricated. Existing glucose sensors utilizing blood require acquisition of a blood sample by pricking the finger, which is painful and inconvenient. To overcome these limitations, we propose a non-invasive glucose sensor with LOC, micro-electro-mechanical system and optical measurement technology. The proposed sensor for measuring glucose in saliva involves pretreatment, mixing, and measurement on a s...

  19. Radical zinc-atom-transfer-based carbozincation of haloalkynes with dialkylzincs

    Directory of Open Access Journals (Sweden)

    Fabrice Chemla

    2013-02-01

    Full Text Available The formation of alkylidenezinc carbenoids by 1,4-addition/carbozincation of dialkylzincs or alkyl iodides based on zinc atom radical transfer, in the presence of dimethylzinc with β-(propargyloxyenoates having pendant iodo- and bromoalkynes, is disclosed. Formation of the carbenoid intermediate is fully stereoselective at −30 °C and arises from a formal anti-selective carbozincation reaction. Upon warming, the zinc carbenoid is stereochemically labile and isomerizes to its more stable form.

  20. Atom-probe tomography of tribological boundary films resulting from boron-based oil additives

    Energy Technology Data Exchange (ETDEWEB)

    Kim, Yoon-Jun; Baik, Sung-Il; Bertolucci-Coelho, Leonardo; Mazzaferro, Lucca; Ramirez, Giovanni; Erdemir, Ali; Seidman, D K

    2016-01-15

    Correlative characterization using atom-probe tomography (APT) and transmission electron microscopy (TEM) was performed on a tribofilm formed during sliding frictional testing with a fully formulated engine oil, which also contains a boron-based additive. The tribofilm formed is ~15 nm thick and consists of oxides of iron and compounds of B, Ca, P, and S, which are present in the additive. This study provides strong evidence for boron being embedded in the tribofilm, which effectively reduces friction and wear losses.

  1. HARDWARE IMPLEMENTATION OF PIPELINE BASED ROUTER DESIGN FOR ON-CHIP NETWORK

    OpenAIRE

    U. Saravanakumar; R. Rangarajan; K. Rajasekar

    2012-01-01

    As the feature size is continuously decreasing and integration density is increasing, interconnections have become a dominating factor in determining the overall quality of a chip. Due to the limited scalability of system bus, it cannot meet the requirement of current System-on-Chip (SoC) implementations where only a limited number of functional units can be supported. Long global wires also cause many design problems, such as routing congestion, noise coupling, and difficult timing closure. ...

  2. Laser Technology in Commercial Atomic Clocks

    Science.gov (United States)

    Lutwak, R.

    2006-05-01

    Commercial atomic frequency standards (AFS) are deployed in diverse civilian, military, and aerospace applications, ranging from high-precision measurement and calibration to navigation, communications and, of course, timekeeping. Currently, commercially available AFS include magnetically-selected cesium beam frequency standards and hydrogen masers and lamp-pumped rubidium oscillators. Despite the revolution in atomic physics and laboratory-scale AFS brought about by the advent of the tunable laser in the early 1970s, commercial AFS invariably rely on more conventional atomic physics technology developed in the 1950s. The reason for this lack of advancement of commercial AFS technology is the relatively poor reliability and environmental sensitivity of narrow-linewidth single-mode laser sources at atomic resonance wavelengths. Over the past 8 years, Symmetricom, in collaboration with laser manufacturers, has developed specialized laser sources for commercial AFS applications. These laser devices, optimized for high spectral purity and long-term reliability, will enable a new generation of commercial AFS. This talk will briefly describe two laser-based atomic frequency standard development programs at Symmetricom. The Chip-Scale Atomic Clock, two orders of magnitude smaller and lower power than any commercial AFS, will enable atomic timing accuracy in portable battery-powered applications. The Optically-Pumped Cesium Beam Frequency Standard, under development for deployment onboard the GPS-III satellite constellation, will provide enhanced short-term stability and longer lifetime compared to magnetically-selected cesium beam AFS.

  3. AUTOMATED FORCE FIELD PARAMETERIZATION FOR NON-POLARIZABLE AND POLARIZABLE ATOMIC MODELS BASED ONAB INITIOTARGET DATA.

    Science.gov (United States)

    Huang, Lei; Roux, Benoît

    2013-08-13

    Classical molecular dynamics (MD) simulations based on atomistic models are increasingly used to study a wide range of biological systems. A prerequisite for meaningful results from such simulations is an accurate molecular mechanical force field. Most biomolecular simulations are currently based on the widely used AMBER and CHARMM force fields, which were parameterized and optimized to cover a small set of basic compounds corresponding to the natural amino acids and nucleic acid bases. Atomic models of additional compounds are commonly generated by analogy to the parameter set of a given force field. While this procedure yields models that are internally consistent, the accuracy of the resulting models can be limited. In this work, we propose a method, General Automated Atomic Model Parameterization (GAAMP), for generating automatically the parameters of atomic models of small molecules using the results from ab initio quantum mechanical (QM) calculations as target data. Force fields that were previously developed for a wide range of model compounds serve as initial guess, although any of the final parameter can be optimized. The electrostatic parameters (partial charges, polarizabilities and shielding) are optimized on the basis of QM electrostatic potential (ESP) and, if applicable, the interaction energies between the compound and water molecules. The soft dihedrals are automatically identified and parameterized by targeting QM dihedral scans as well as the energies of stable conformers. To validate the approach, the solvation free energy is calculated for more than 200 small molecules and MD simulations of 3 different proteins are carried out.

  4. Theoretical realization of cluster-assembled hydrogen storage materials based on terminated carbon atomic chains.

    Science.gov (United States)

    Liu, Chun-Sheng; An, Hui; Guo, Ling-Ju; Zeng, Zhi; Ju, Xin

    2011-01-14

    The capacity of carbon atomic chains with different terminations for hydrogen storage is studied using first-principles density functional theory calculations. Unlike the physisorption of H(2) on the H-terminated chain, we show that two Li (Na) atoms each capping one end of the odd- or even-numbered carbon chain can hold ten H(2) molecules with optimal binding energies for room temperature storage. The hybridization of the Li 2p states with the H(2)σ orbitals contributes to the H(2) adsorption. However, the binding mechanism of the H(2) molecules on Na arises only from the polarization interaction between the charged Na atom and the H(2). Interestingly, additional H(2) molecules can be bound to the carbon atoms at the chain ends due to the charge transfer between Li 2s2p (Na 3s) and C 2p states. More importantly, dimerization of these isolated metal-capped chains does not affect the hydrogen binding energy significantly. In addition, a single chain can be stabilized effectively by the C(60) fullerenes termination. With a hydrogen uptake of ∼10 wt.% on Li-coated C(60)-C(n)-C(60) (n = 5, 8), the Li(12)C(60)-C(n)-Li(12)C(60) complex, keeping the number of adsorbed H(2) molecules per Li and stabilizing the dispersion of individual Li atoms, can serve as better building blocks of polymers than the (Li(12)C(60))(2) dimer. These findings suggest a new route to design cluster-assembled hydrogen storage materials based on terminated sp carbon chains.

  5. An Algorithm for Sequencing by Hybridization Based on an Alternating DNA Chip.

    Science.gov (United States)

    Radom, Marcin; Formanowicz, Piotr

    2017-02-28

    Sequencing by hybridization allows the reconstruction of the DNA string of a given length from smaller fragments. These fragments are obtained in the hybridization experiment in which the DNA hybridizes to a DNA chip. In a classical approach, the chip consists of all oligonucleotides of a given length, with only one type of oligonucleotide for each probe of the chip. In this paper, we propose an algorithm solving the non-classical case of SBH, where the chip probes consist set of oligonucleotides described by some specific pattern. We will present the definition of such a non-classical DNA chip and the algorithm solving a sequencing problem related to such a chip. Unlike recent metaheuristic approaches to the classical SBH problem, the proposed algorithm tries to find an exact sequence, and even in the presence of all the hybridization errors in spectrum is very often able to do so in a short time. If only negative errors from repetitions are allowed, then the algorithm is able to reconstruct sequences having length of thousands nucleotides.

  6. Silicon-nanowire based attachment of silicon chips for mouse embryo labelling.

    Science.gov (United States)

    Durán, S; Novo, S; Duch, M; Gómez-Martínez, R; Fernández-Regúlez, M; San Paulo, A; Nogués, C; Esteve, J; Ibañez, E; Plaza, J A

    2015-03-21

    The adhesion of small silicon chips to cells has many potential applications as direct interconnection of the cells to the external world can be accomplished. Hence, although some typical applications of silicon nanowires integrated into microsystems are focused on achieving a cell-on-a-chip strategy, we are interested in obtaining chip-on-a-cell systems. This paper reports the design, technological development and characterization of polysilicon barcodes featuring silicon nanowires as nanoscale attachment to identify and track living mouse embryos during their in vitro development. The chips are attached to the outer surface of the Zona Pellucida, the cover that surrounds oocytes and embryos, to avoid the direct contact between the chip and the embryo cell membrane. Two attachment methodologies, rolling and pushpin, which allow two entirely different levels of applied forces to attach the chips to living embryos, are evaluated. The former consists of rolling the mouse embryos over one barcode with the silicon nanowires facing upwards, while in the latter, the barcode is pushed against the embryo with a micropipette. The effect on in vitro embryo development and the retention rate related to the calculated applied forces are stated. Field emission scanning electron microscopy inspection, which allowed high-resolution imaging, also confirms the physical attachment of the nanowires with some of them piercing or wrapped by the Zona Pellucida and revealed extraordinary bent silicon nanowires.

  7. Chip to System Testability

    National Research Council Canada - National Science Library

    McNamer, Michael

    1997-01-01

    The ultimate objective of the Chip-to-System Testability program was the development of a structured testability implementation methodology which will be used as a basis for a PC-based tool called TESPAD...

  8. Design and Fabrication of Polymer-based Lab-on-a-Chip Devices Towards Applications in Food and Environmental Analysis

    DEFF Research Database (Denmark)

    Senkbeil, Silja

    2012-01-01

    and low reagent consumption are attractive for many applications in the life sciences, e.g., for DNA sequencing platforms and screening applications in drug development. It was only recently that the use of LOC systems gained considerable interest in the broad field of environmental analysis. In this work......, several polymeric LOC systems for the analysis of dithiocarbamate (DTC) pesticides were designed and their performance was tested. Cyclic olefin polymer (COP) was studied as a potential material for non-aqueous analysis of DTC pesticides. While COP has some outstanding material properties compared...... be separated on these chips, demonstrating that chips fabricated from thiol:ene offer a great potential within polymer based CE....

  9. A system-on-chip and paper-based inkjet printed electrodes for a hybrid wearable bio-sensing system.

    Science.gov (United States)

    Xie, Li; Yang, Geng; Mäntysalo, Matti; Jonsson, Fredrik; Zheng, Li-Rong

    2012-01-01

    This paper presents a hybrid wearable bio-sensing system, which combines traditional small-area low-power and high-performance System-on-Chip (SoC), flexible paper substrate and cost-effective Printed Electronics. Differential bio-signals are measured, digitized, stored and transmitted by the SoC. The total area of the chip is 1.5 × 3.0 mm(2). This enables the miniaturization of the wearable system. The electrodes and interconnects are inkjet printed on paper substrate and the performance is verified in in-vivo tests. The quality of electrocardiogram signal sensed by printed electrodes is comparable with commercial electrodes, with noise level slightly increased. The paper-based inkjet printed system is flexible, light and thin, which makes the final system comfortable for end-users. The hybrid bio-sensing system offers a potential solution to the next generation wearable healthcare technology.

  10. Recent Advances in Atomic Metal Doping of Carbon-based Nanomaterials for Energy Conversion.

    Science.gov (United States)

    Bayatsarmadi, Bita; Zheng, Yao; Vasileff, Anthony; Qiao, Shi-Zhang

    2017-06-01

    Nanostructured metal-contained catalysts are one of the most widely used types of catalysts applied to facilitate some of sluggish electrochemical reactions. However, the high activity of these catalysts cannot be sustained over a variety of pH ranges. In an effort to develop highly active and stable metal-contained catalysts, various approaches have been pursued with an emphasis on metal particle size reduction and doping on carbon-based supports. These techniques enhances the metal-support interactions, originating from the chemical bonding effect between the metal dopants and carbon support and the associated interface, as well as the charge transfer between the atomic metal species and carbon framework. This provides an opportunity to tune the well-defined metal active centers and optimize their activity, selectivity and stability of this type of (electro)catalyst. Herein, recent advances in synthesis strategies, characterization and catalytic performance of single atom metal dopants on carbon-based nanomaterials are highlighted with attempts to understand the electronic structure and spatial arrangement of individual atoms as well as their interaction with the supports. Applications of these new materials in a wide range of potential electrocatalytic processes in renewable energy conversion systems are also discussed with emphasis on future directions in this active field of research. © 2017 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  11. Adjunctive Effects of A Piscean Collagen-Based Controlled-Release Chlorhexidine Chip in the Treatment of Chronic Periodontitis: A Clinical and Microbiological Study

    Science.gov (United States)

    John, Priya; Lazarus, Flemingson; Selvam, Arul; Prabhuji, Munivenkatappa Lakshmaiah Venkatesh

    2015-01-01

    Introduction PerioChip a bovine origin gelatine based CHX chip has shown beneficial effects in the management of Chronic Periodontitis. A new fish collagen based CHX chip similar to PerioChip is currently available; however this product has not been thoroughly researched. Aim The aim of the present study was to evaluate the effectiveness of a new Piscean collagen-based controlled-release chlorhexidine chip (CHX chip) as an adjunctive therapy to scaling and root planing (SRP). Settings and Design The study was conducted as a randomised, split-mouth, controlled clinical trial at Krishnadevaraya College of Dental Sciences, Bangalore, India. Materials and Methods In a split–mouth study involving 20 sites in 10 patients with chronic periodontitis, control sites received scaling and root planing and test sites received scaling and root planing (SRP) and the intrapocket CHX chip placement as an adjunct. Subgingival plaque samples were collected from both control and test sites at baseline, 11 days and 11 weeks and the anaerobic colony count were assessed. Clinical parameters that were recorded at baseline and 11 weeks were gingival index, Plaque index, Probing pocket depth (PPD), and Clinical attachment level (CAL). Plaque index was recorded additionally at 11 days. Results In the test group there was a statistically significant reduction in the total anaerobic colony count, gingival index and plaque scores from baseline as compared to control sites at all time intervals. An additional 0.8mm reduction in mean probing pocket depth was noted in the test group. Gain in Clinical attachment level was comparable in both groups. Conclusion The adjunctive use of the new collagen-based CHX chip yielded significant antimicrobial benefit accompanied by a reduction in probing depth and a clinical attachment level gain as compared to SRP alone. This suggests that it may be a useful treatment option of nonsurgical periodontal treatment of chronic periodontitis. PMID:26155567

  12. Adjunctive Effects of A Piscean Collagen-Based Controlled-Release Chlorhexidine Chip in the Treatment of Chronic Periodontitis: A Clinical and Microbiological Study.

    Science.gov (United States)

    John, Priya; Lazarus, Flemingson; George, Joann Pauline; Selvam, Arul; Prabhuji, Munivenkatappa Lakshmaiah Venkatesh

    2015-05-01

    PerioChip a bovine origin gelatine based CHX chip has shown beneficial effects in the management of Chronic Periodontitis. A new fish collagen based CHX chip similar to PerioChip is currently available; however this product has not been thoroughly researched. The aim of the present study was to evaluate the effectiveness of a new Piscean collagen-based controlled-release chlorhexidine chip (CHX chip) as an adjunctive therapy to scaling and root planing (SRP). The study was conducted as a randomised, split-mouth, controlled clinical trial at Krishnadevaraya College of Dental Sciences, Bangalore, India. In a split-mouth study involving 20 sites in 10 patients with chronic periodontitis, control sites received scaling and root planing and test sites received scaling and root planing (SRP) and the intrapocket CHX chip placement as an adjunct. Subgingival plaque samples were collected from both control and test sites at baseline, 11 days and 11 weeks and the anaerobic colony count were assessed. Clinical parameters that were recorded at baseline and 11 weeks were gingival index, Plaque index, Probing pocket depth (PPD), and Clinical attachment level (CAL). Plaque index was recorded additionally at 11 days. In the test group there was a statistically significant reduction in the total anaerobic colony count, gingival index and plaque scores from baseline as compared to control sites at all time intervals. An additional 0.8mm reduction in mean probing pocket depth was noted in the test group. Gain in Clinical attachment level was comparable in both groups. The adjunctive use of the new collagen-based CHX chip yielded significant antimicrobial benefit accompanied by a reduction in probing depth and a clinical attachment level gain as compared to SRP alone. This suggests that it may be a useful treatment option of nonsurgical periodontal treatment of chronic periodontitis.

  13. Newborn screening by matrix-assisted laser desorption/ionization mass spectrometry based on parylene-matrix chip.

    Science.gov (United States)

    Kim, Jo-Il; Noh, Joo-Yoon; Kim, Mira; Park, Jong-Min; Song, Hyun-Woo; Kang, Min-Jung; Pyun, Jae-Chul

    2017-08-01

    Newborn screening for diagnosis of phenylketonuria, homocystinuria, and maple syrup urine disease have been conducted by analyzing the concentration of target amino acids using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-ToF MS) based on parylene-matrix chip. Parylene-matrix chip was applied to MALDI-ToF MS analysis reducing the matrix peaks significantly at low mass-to-charge ratio range (m/z mass spectrometric analysis showing 13.3 to 45% of extraction efficiency. Calibration curves for diagnosis of neonatal metabolic disorders were obtained by analyzing methanol-extracted serum spiked with target amino acids using MALDI-ToF MS. They showed good linearity (R2 > 0.98) and the LODs were ranging from 9.0 to 22.9 μg/mL. Effect of proteins in serum was estimated by comparing MALDI-ToF mass spectra of amino acids-spiked serum before and after the methanol extraction. Interference of other amino acids on analysis of target analyte was determined to be insignificant. From these results, MALDI-ToF MS based on parylene-matrix chip could be applicable to medical diagnosis of neonatal metabolic disorders. Copyright © 2017 Elsevier Inc. All rights reserved.

  14. Coherent and dynamic beam splitting based on light storage in cold atoms.

    Science.gov (United States)

    Park, Kwang-Kyoon; Zhao, Tian-Ming; Lee, Jong-Chan; Chough, Young-Tak; Kim, Yoon-Ho

    2016-09-28

    We demonstrate a coherent and dynamic beam splitter based on light storage in cold atoms. An input weak laser pulse is first stored in a cold atom ensemble via electromagnetically-induced transparency (EIT). A set of counter-propagating control fields, applied at a later time, retrieves the stored pulse into two output spatial modes. The high visibility interference between the two output pulses clearly demonstrates that the beam splitting process is coherent. Furthermore, by manipulating the control lasers, it is possible to dynamically control the storage time, the power splitting ratio, the relative phase, and the optical frequencies of the output pulses. With further improvements, the active beam splitter demonstrated in this work might have applications in photonic photonic quantum information and in all-optical information processing.

  15. Double-negative acoustic metamaterial based on hollow steel tube meta-atom

    CERN Document Server

    Chen, Huaijun; Ding, Changlin; Luo, Chunrong; Zhao, Xiaopeng

    2012-01-01

    We presented an acoustic 'meta-atom' model of hollow steel tube (HST). The simulated and experimental results demonstrated that the resonant frequency is closely related to the length of the HST. Based on the HST model, we fabricated a two-dimensional (2D) acoustic metamaterial (AM) with negative effective mass density, which put up the transmission dip and accompanied inverse phase in experiment. By coupling the HST with split hollow sphere (SHS), another kind of 'meta-atom' with negative effective modulus in the layered sponge matrix, a three-dimensional (3D) AM was fabricated with simultaneously negative modulus and negative mass density. From the experiment, it is shown that the transmission peak similar to the electromagnetic metamaterials exhibited in the double-negative region of the AM. We also demonstrated that this kind of doble-negative AM can faithfully distinguish the acoustic sub-wavelength details ({\\lambda}/7) at the resonance frequency of 1630Hz.

  16. System on chip thermal vacuum sensor based on standard CMOS process

    Energy Technology Data Exchange (ETDEWEB)

    Li Jinfeng; Tang Zhenan; Wang Jiaqi, E-mail: ljf970204@yahoo.com.c [Department of Electronic Engineering, Dalian University of Technology, Dalian 116024 (China)

    2009-03-15

    An on-chip microelectromechanical system was fabricated in a 0.5 mum standard CMOS process for gas pressure detection. The sensor was based on a micro-hotplate (MHP) and had been integrated with a rail to rail operational amplifier and an 8-bit successive approximation register (SAR) A/D converter. A tungsten resistor was manufactured on the MHP as the sensing element, and the sacrificial layer of the sensor was made from polysilicon and etched by surface-micromachining technology. The operational amplifier was configured to make the sensor operate in constant current mode. A digital bit stream was provided as the system output. The measurement results demonstrate that the gas pressure sensitive range of the vacuum sensor extends from 1 to 10{sup 5} Pa. In the gas pressure range from 1 to 100 Pa, the sensitivity of the sensor is 0.23 mV/ Pa, the linearity is 4.95%, and the hysteresis is 8.69%. The operational amplifier can drive 200 omega resistors distortionlessly, and the SAR A/D converter achieves a resolution of 7.4 bit with 100 kHz sample rate. The performance of the operational amplifier and the SAR A/D converter meets the requirements of the sensor system.

  17. A programming environment to control switching networks based on STC104 packet routing chip

    Science.gov (United States)

    Legrand, I. C.; Schwendicke, U.; Leich, H.; Medinnis, M.; Koehler, A.; Wegner, P.; Sulanke, K.; Dippel, R.; Gellrich, A.

    1997-02-01

    The software environment used to control a large switching architecture based on SGS-Thomson STC104 (an asynchronous 32-way dynamic packet routing chip) is presented. We are evaluating this switching technology for large scale, real-time parallel systems. A Graphical User Interface (GUI) written as a multi-thread application in Java allows to set the switch configuration and to continuously monitor the state of each link. This GUI connects to a multi-thread server via TCP/IP sockets. The server is running on a PC-Linux system and implements the virtual channel protocol in communicating with the STC104 switching units using the Data Strobe link or the VME bus. Linux I/O drivers to control the Data Strobe link parallel adaptor (STC101) were developed. For each client the server creates a new thread and allocates a new socket for communications. The Java code of the GUI may be transferred to any client using the http protocol providing a user friendly interface to the system with real-time monitoring which is also platform independent.

  18. Silicon-chip-based mid-infrared dual-comb spectroscopy

    CERN Document Server

    Yu, Mengjie; Griffith, Austin G; Picqué, Nathalie; Lipson, Michal; Gaeta, Alexander L

    2016-01-01

    On-chip spectroscopy that could realize real-time fingerprinting with label-free and high-throughput detection of trace molecules is one of the 'holy grails" of sensing. Such miniaturized spectrometers would greatly enable applications in chemistry, bio-medicine, material science or space instrumentation, such as hyperspectral microscopy of live cells or pharmaceutical quality control. Dual-comb spectroscopy (DCS), a recent technique of Fourier transform spectroscopy without moving parts, is particularly promising since it measures high-precision spectra in the gas phase using only a single detector. Here, we present a microresonator-based platform designed for mid-infrared (mid-IR) DCS. A single continuous-wave (CW) low-power pump source generates two mutually coherent mode-locked frequency combs spanning from 2.6 $\\mu$m to 4.1 $\\mu$m in two silicon micro-resonators. Thermal control and free-carrier injection control modelocking of each comb and tune the dual-comb parameters. The large line spacing of the co...

  19. Visual positioning for round pin chips based on a parametric deformable template

    Science.gov (United States)

    Wang, Zujin; Huang, Xiaodiao

    2014-05-01

    With increasing necessities for reliable printed circuit board (PCB) products, there has been a considerable demand for a high speed and high precision vision positioning system. To locate a round pin chip with high accuracy and reliability with the obtained image, a positioning method is proposed based on the analysis of the image features, in which a deformable template is used to detect the deflection angle and the offset. The deformable template is constructed according to the arrangement of pins, whose offset, deflection, and zoom are denoted with five parameters. In addition, an energy function is defined by combining the image gradient, gray, and geometry features, which is optimized with the genetic algorithm to find the best matching position between the deformable template and a target image. The last experimental results show that this method has good accuracy, stability, and computing speed, and the detection errors are <0.1 deg and 0.25 pixels, which can meet the positioning accuracy of the placement machine vision system.

  20. Applications of stereolithography for rapid prototyping of biologically compatible chip-based physiometers

    Science.gov (United States)

    Fuad, Nurul Mohd; Zhu, Feng; Kaslin, Jan; Wlodkowic, Donald

    2016-12-01

    Despite the growing demand and numerous applications for the biomedical community, the developments in millifluidic devices for small model organisms are limited compared to other fields of biomicrofluidics. The main reasons for this stagnanation are difficulties in prototyping of millimeter scale and high aspect ratio devices needed for large metazoan organisms. Standard photolithography is in this context a time consuming procedure not easily adapted for fabrication of molds with vertical dimensions above 1 mm. Moreover, photolithography is still largely unattainable to a gross majority of biomedical laboratories willing to pursue custom development of their own chip-based platforms due to costs and need for dedicated clean room facilities. In this work, we present application of high-definition additive manufacturing systems for fabrication of 3D printed moulds used in soft lithography. Combination of 3D printing with PDMS replica molding appears to be an alternative for millifluidic systems that yields rapid and cost effective prototyping pipeline. We investigated the important aspects on both 3D printed moulds and PDMS replicas such as geometric accuracies and surface topology. Our results demonstrated that SLA technologies could be applied for rapid and accurate fabrication of millifluidic devices for trapping of millimetre-sized specimens such as living zebrafish larvae. We applied the new manufacturing method in a proof-of-concept prototype device capable of trapping and immobilizing living zebrafish larvae for recording heart rate variation in cardio-toxicity experiments.

  1. Cold atoms close to surfaces

    DEFF Research Database (Denmark)

    Krüger, Peter; Wildermuth, Stephan; Hofferberth, Sebastian

    2005-01-01

    Microscopic atom optical devices integrated on atom chips allow to precisely control and manipulate ultra-cold (T atoms and Bose-Einstein condensates (BECs) close to surfaces. The relevant energy scale of a BEC is extremely small (down to ... be utilized as a sensor for variations of the potential energy of the atoms close to the surface. Here we describe how to use trapped atoms as a measurement device and analyze the performance and flexibility of the field sensor. We demonstrate microscopic magnetic imaging with simultaneous high spatial...

  2. Recovery of the Earth's Gravity Field Based on Spaceborne Atom-interferometry and Its Accuracy Estimation

    Directory of Open Access Journals (Sweden)

    ZHU Zhu

    2017-09-01

    Full Text Available The electrostatic gravity gradiometer has been successfully applied as a core sensor in satellite gravity gradiometric mission GOCE, and its observations are used to recover the Earth's static gravity field with a degree and order above 200. The lifetime of GOCE has been over, and the next generation satellite gravity gradiometry with higher resolution is urgently required in order to recover the global steady-state gravity field with a degree and order of 200~360. High potential precision can be obtained in space by atom-interferometry gravity gradiometer due to its long interference time, and thus the atom-interferometry-based satellite gravity gradiometry has been proposed as one of the candidate techniques for the next satellite gravity gradiometric mission. In order to achieve the science goal for high resolution gravity field measurement in the future, a feasible scheme of atom-interferometry gravity gradiometry in micro-gravity environment is given in this paper, and the gravity gradient measurement can be achieved with a noise of 0.85mE/Hz1/2. Comparison and estimation of the Earth's gravity field recovery precision for different types of satellite gravity gradiometry is discussed, and the results show that the satellite gravity gradiometry based on atom-interferometry is expected to provide the global gravity field model with an improved accuracy of 7~8cm in terms of geoid height and 3×10-5 m/s2 in terms of gravity anomaly respectively at a degree and order of 252~290.

  3. Multilevel Atomic Coherent States and Atomic Holomorphic Representation

    Science.gov (United States)

    Cao, Chang-Qi; Haake, Fritz

    1996-01-01

    The notion of atomic coherent states is extended to the case of multilevel atom collective. Based on atomic coherent states, a holomorphic representation for atom collective states and operators is defined. An example is given to illustrate its application.

  4. Ultrafast, laser-based, x-ray science: the dawn of atomic-scale cinematography

    Energy Technology Data Exchange (ETDEWEB)

    Barty, C.P.J. [University of California, Department of Applied Mechanics and Engineering Science, Urey Hall, Mali Code 0339, San Diego, La Jolla, CA (United States)

    2000-03-01

    The characteristics of ultrafast chirped pulse amplification systems are reviewed. Application of ultrafast chirped pulse amplification to the generation of femtosecond, incoherent, 8-keV line radiation is outlined and the use of femtosecond laser-based, x-rays for novel time-resolved diffraction studies of crystalline dynamics with sub-picosecond temporal resolution and sub-picometer spatial resolution is reviewed in detail. Possible extensions of laser-based, x-ray technology and evaluation of alternative x-ray approaches for time-resolved studies of the atomic scale dynamics are given. (author)

  5. Building a multi-walled carbon nanotube-based mass sensor with the atomic force microscope

    DEFF Research Database (Denmark)

    Mateiu, Ramona Valentina; Kuhle, A.; Marie, Rodolphe Charly Willy

    2005-01-01

    are used. The gold substrate is first covered with hydrophobic thiol molecules: octadecanthiol. The octadecanthiol molecules are then selectively removed from small areas by nanoshaving the gold substrate with the tip of an atomic force microscope (AFM) operating in contact mode. Hydrophilic thiols (2......We report an approach for building a mass sensor based on multi-walled carbon nanotubes (MWCNT). We propose a method with a great potential for the positioning of MWCNTs based on self-assembly onto patterned hydrophilic areas. For the experiments ultra flat mica substrates covered with gold...

  6. Metallic nanoparticle-based strain sensors elaborated by atomic layer deposition

    Science.gov (United States)

    Puyoo, E.; Malhaire, C.; Thomas, D.; Rafaël, R.; R'Mili, M.; Malchère, A.; Roiban, L.; Koneti, S.; Bugnet, M.; Sabac, A.; Le Berre, M.

    2017-03-01

    Platinum nanoparticle-based strain gauges are elaborated by means of atomic layer deposition on flexible polyimide substrates. Their electro-mechanical response is tested under mechanical bending in both buckling and conformational contact configurations. A maximum gauge factor of 70 is reached at a strain level of 0.5%. Although the exponential dependence of the gauge resistance on strain is attributed to the tunneling effect, it is shown that the majority of the junctions between adjacent Pt nanoparticles are in a short circuit state. Finally, we demonstrate the feasibility of an all-plastic pressure sensor integrating Pt nanoparticle-based strain gauges in a Wheatstone bridge configuration.

  7. From a network of computed reaction enthalpies to atom-based thermochemistry (NEAT).

    Science.gov (United States)

    Császár, Attila G; Furtenbacher, Tibor

    2010-04-26

    A simple and fast, weighted, linear least-squares refinement protocol and code is presented for inverting the information contained in a network of quantum chemically computed 0 K reaction enthalpies. This inversion yields internally consistent 0 K enthalpies of formation for the species of the network. The refinement takes advantage of the fact that the accuracy of computed enthalpies depends strongly on the quantum-chemical protocol employed for their determination. Different protocols suffer from different sources of error; thus, the reaction enthalpies computed by them have "random" residual errors. Since it is much more natural for quantum-chemical energy and enthalpy results, including reaction enthalpies, to be based on the electronic ground states of the atoms and not on the historically preferred elemental states, and since these two possible protocols can be converted into each other straightforwardly, it is proposed that first-principles thermochemistry should employ the ground electronic states of atoms. In this scheme, called atom-based thermochemistry (AT), the enthalpy of formation of a gaseous compound corresponds simply to the total atomization energy of the species; it is always positive, and it reflects the bonding strength within the molecule. The inversion protocol developed and based on AT is termed NEAT, which represents the fact that the protocol proceeds from a network of computed reaction enthalpies toward atom-based thermochemistry, most directly to atom-based enthalpies of formation. After assembling a database that consisted of 361 ab initio reactions and reaction enthalpies involving 188 species, collected from 31 literature sources, the following dependable 0 K atom-based enthalpies of formation, Delta(f)${H{{{\\rm AT}\\hfill \\atop 0\\hfill}}}$, all in kJ mol(-1), have been obtained by means of NEAT: H(2)=432.07(0), CH=334.61(15), NH=327.69(25), OH=425.93(21), HF=566.13(31), CO=1072.08(28), O(2)=493.51(34), CH(2)=752.40(21), H(2)O

  8. Microfluidic Free-Flow Electrophoresis Based Solvent Exchanger for Continuously Operating Lab-on-Chip Applications.

    Science.gov (United States)

    Zitzmann, Franziska D; Jahnke, Heinz-Georg; Pfeiffer, Simon A; Frank, Ronny; Nitschke, Felix; Mauritz, Laura; Abel, Bernd; Belder, Detlev; Robitzki, Andrea A

    2017-12-19

    For miniaturization and integration of chemical synthesis and analytics on small length scales, the development of complex lab-on-chip (LOC) systems is in the focus of many current research projects. While application specific synthesis and analytic modules and LOC devices are widely described, the combination and integration of different modules is intensively investigated. Problems for in-line processes such as solvent incompatibilities, e.g., for a multistep synthesis or the combination of an organic drug synthesis with a cell-based biological activity testing system, require a solvent exchange between serialized modules. Here, we present a continuously operating microfluidic solvent exchanger based on the principle of free-flow electrophoresis for miscible organic/aqueous fluids. We highlight a proof-of-principle and describe the working principle for the model compound fluorescein, where the organic solvent DMSO is exchanged against an aqueous buffer. The DMSO removal performance could be significantly increased to 95% by optimization of the microfluidic layout. Moreover, the optimization of the inlet flow ratio resulted in a minimized dilution factor of 5, and we were able to demonstrate that a reduction of the supporting instrumentation is possible without a significant decrease of the DMSO removal performance. Finally, the compatibility of the developed solvent exchanger for cell based downstream applications was proven. The impedimetric monitoring of HEK293A cells in a continuously operating microfluidic setup revealed no adverse effects of the residual DMSO after the solvent replacement. Our solvent exchanger device demonstrates the power of micro-free-flow electrophoresis not only as a powerful technique for separation and purification of compound mixtures but also for solvent replacement.

  9. Performance of a radiation hard 128 channel analogue front-end chip for the readout of a silicon-based hybrid photon detector

    CERN Document Server

    Lacasta, C; Dulinski, W; Chesi, Enrico Guido; Joram, C; Kaplon, J; Lozano-Bahilo, J; Séguinot, Jacques; Szczygiel, R; Weilhammer, Peter; Ypsilantis, Thomas

    2003-01-01

    The performance is described of a front-end chip, the SCT128A-LC chip, originally developed for the readout of a silicon based Hybrid Photon Detector (HPD), which is part of an RICH detector to be run in an LHC experimental environment. The relatively low signal charge from single photoelectrons, impinging on the silicon pad sensor, put very stringent requirements on the noise performance of the front-end chip. An absolute noise calibration using X-ray sources and a **2**4**1Am gamma source was performed. It is demonstrated that sufficiently good signal over noise ratio can be obtained to use this chip for the read-out of an HPD in LHC experiments.

  10. Morphological and structural study of gas atomized Zr-Cu-based glass-forming alloys

    Energy Technology Data Exchange (ETDEWEB)

    Zambon, A.; Badan, B

    2004-07-15

    Zr-Cu-based glass-forming alloys were processed in a laboratory scale gas atomizer, operated in sonic conditions with nitrogen or helium as the atomizing medium. Powders of rather wide size distributions were obtained, in the under 212 {mu}m range, which afforded to carry out comparative phase analyses on particles which underwent quite different cooling conditions. X-ray diffraction examinations as well as light microscopy, transmission electron microscopy, differential thermal analysis (DTA) and microhardness determinations were used to investigate the powders belonging to different size ranges. Amorphous, partially crystalline and fully crystalline powders were obtained from each atomization batch. Light microscopy afforded to evaluate the morphometric details such as the secondary dendrite arm spacing in the crystalline particles, which were correlated with the estimated cooling rates computed by means of a simplified computer code. X-ray diffraction, TEM examinations and electron diffraction confirmed that conditions were established for the development of amorphous or nanocrystalline particles, in particular in the 'under 38 {mu}m' and in the 38-45 {mu}m size ranges. Microhardness determinations showed an extremely high hardness, of the order of 1000-1100 HV{sub 0.05} in the case of fully amorphous particles, which could be encountered mainly in the smaller size ranges, while in the case of crystalline powders the hardness was around a half of such value mainly in the larger, fully crystalline ones.

  11. Development of double-generation gold nanoparticle chip-based dengue virus detection system combining fluorescence turn-on probes.

    Science.gov (United States)

    Tung, Yen-Ting; Chang, Cheng-Chung; Lin, Yi-Ling; Hsieh, Shie-Liang; Wang, Gou-Jen

    2016-03-15

    A sensing platform, combined amino acid labeling kit and a double-generation gold nanoparticle (DG-AuNP) chip, was designed to prove the existence of weak but crucial binding between the DV (dengue virus) and its CLEC5A receptor. At first, we have designed a kit combining the novel fluorescence turn-on sensors for lysine, arginine and cysteine amino acids. Advantages of this kit are that emission on-off switching can increase the signal-to-noise ratio and the virus must be fluorescently labelled with sufficient numbers of fluorophores because the lysine, arginine and cysteine residues of viral proteins are labelled simultaneously. Consequently, this kit can be used to light-on single DV spot both in solution and in cell under fluorescence microscopy. Second, the labeling kit was used to examine the DV binding to the CLEC5A-coated DG-AuNP chip. Based on our study, the double-generation gold nanoparticle construction of chip can support more coating areas for receptor CLEC5A and then, support more binding opportunities for DV. Meanwhile, the grooves between nanohemispheres will provide the extra driving force for DV stacking. We try to give a proof that this sensing platform is very useful for detection of weak binding mechanism. Copyright © 2015 Elsevier B.V. All rights reserved.

  12. Design of a current based readout chip and development of a DEPFET pixel prototype system for the ILC vertex detector

    Energy Technology Data Exchange (ETDEWEB)

    Trimpl, M.

    2005-12-15

    The future TeV-scale linear collider ILC (International Linear Collider) offers a large variety of precision measurements complementary to the discovery potential of the LHC (Large Hadron Collider). To fully exploit its physics potential, a vertex detector with unprecedented performance is needed. One proposed technology for the ILC vertex detector is the DEPFET active pixel sensor. The DEPFET sensor offers particle detection with in-pixel amplification by incorporating a field effect transistor into a fully depleted high-ohmic silicon substrate. The device provides an excellent signal-to-noise ratio and a good spatial resolution at the same time. To establish a very fast readout of a DEPFET pixel matrix with row rates of 20 MHz and more, the 128 channel CURO II ASIC has been designed and fabricated. The architecture of the chip is completely based on current mode techniques (SI) perfectly adapted to the current signal of the sensor. For the ILC vertex detector a prototype system with a 64 x 128 DEPFET pixel matrix read out by the CURO II chip has been developed. The design issues and the standalone performance of the readout chip as well as first results with the prototype system will be presented. (orig.)

  13. Improved liquid chromatography-MS/MS of heparan sulfate oligosaccharides via chip-based pulsed makeup flow.

    Science.gov (United States)

    Huang, Yu; Shi, Xiaofeng; Yu, Xiang; Leymarie, Nancy; Staples, Gregory O; Yin, Hongfeng; Killeen, Kevin; Zaia, Joseph

    2011-11-01

    Microfluidic chip-based hydrophilic interaction chromatography (HILIC) is a useful separation system for liquid chromatography-mass spectrometry (LC-MS) in compositional profiling of heparan sulfate (HS) oligosaccharides; however, ions observed using HILIC LC-MS are low in charge. Tandem MS of HS oligosaccharide ions with low charge results in undesirable losses of SO(3) from precursor ions during collision induced dissociation. One solution is to add metal cations to stabilize sulfate groups. Another is to add a nonvolatile, polar compound such as sulfolane, a molecule known to supercharge proteins, to produce a similar effect for oligosaccharides. We demonstrate use of a novel pulsed makeup flow (MUF) HPLC-chip. The chip enables controlled application of additives during specified chromatographic time windows and thus minimizes the extent to which nonvolatile additives build up in the ion source. The pulsed MUF system was applied to LC-MS/MS of HS oligosaccharides. Metal cations and sulfolane were tested as additives. The most promising results were obtained for sulfolane, for which supercharging of the oligosaccharide ions increased their signal strengths relative to controls. Tandem MS of these supercharged precursor ions showed decreased abundances of product ions from sulfate losses yet more abundant product ions from backbone cleavages.

  14. A polymer lab-on-a-chip for reverse transcription (RT)-PCR based point-of-care clinical diagnostics.

    Science.gov (United States)

    Lee, Soo Hyun; Kim, Sung-Woo; Kang, Ji Yoon; Ahn, Chong H

    2008-12-01

    An innovative polymer lab-on-a-chip (LOC) for reverse transcription (RT)-polymerase chain reaction (PCR) has been designed, fabricated, and characterized for point-of-care testing (POCT) clinical diagnostics. In addition, a portable analyzer that consists of a non-contact infrared (IR) based temperature control system for RT-PCR process and an optical detection system for on-chip detection, has also been developed and used to monitor the RT-PCR LOC. The newly developed LOC and analyzer have been interfaced and optimized for performing RT-PCR procedures and chemiluminescence assays in sequence. As a clinical diagnostic application, human immunodeficiency virus (HIV) for the early diagnosis of acquired immune deficiency syndrome (AIDS) has been successfully detected and analyzed using the newly developed LOC and analyzer, where the primer sets for p24 and gp120 were used as the makers for HIV. The developed polymer LOC and analyzer for RT-PCR can be used for POCT for the analysis of HIV with the on-chip RT-PCR and chemiluminescence assays in shorter than one hour with minimized cross-contamination.

  15. Microfluidic chip-based nanoelectrode array as miniaturized biochemical sensing platform for prostate-specific antigen detection.

    Science.gov (United States)

    Triroj, Napat; Jaroenapibal, Papot; Shi, Haibin; Yeh, Joanne I; Beresford, Roderic

    2011-02-15

    A microfluidic biosensor chip with an embedded three-electrode configuration is developed for the study of the voltammetric response of a nanoelectrode array with controlled inter-electrode distance in a nanoliter-scale sample volume. The on-chip three-electrode cell consists of a 5 × 5 array of Au working nanoelectrodes with radii between 60 and 120 nm, a Cl(2)-plasma-treated Ag/AgCl reference electrode, and a Au counter electrode. The nanoelectrode array is fabricated by creating high-aspect-ratio pores through an alumina insulating layer using an I(2) gas-assisted focused-ion-beam (FIB) milling, ion beam sculpting, and electrodeposition of Au. The glass substrate with the electrode pattern is assembled with a polydimethylsiloxane (PDMS) microchannel slab giving a volume of 180 nL for each channel. Cyclic voltammetry calibration with a standard redox species exhibits a significant increase of current density by two orders of magnitude compared to that obtained from a microelectrode. On-chip functionalization of the nanoelectrodes with a prostate-specific antigen (PSA) biosensor complex and detection of PSA based on a competitive immunoassay method are performed. The detection limit is approximately 10 pg/mL (∼270 fM), which corresponds to roughly 30,000 copies of PSA in the microchannel test volume. Copyright © 2010 Elsevier B.V. All rights reserved.

  16. Plasmon-enhanced fluorescence imaging with silicon-based silver chips for protein and nucleic acid assay.

    Science.gov (United States)

    Yuan, Bing; Jiang, Xiangxu; Yao, Chu; Bao, Meimei; Liu, Jiaojiao; Dou, Yujiang; Xu, Yinze; He, Yao; Yang, Kai; Ma, Yuqiang

    2017-02-22

    Metal-enhanced fluorescence shows great potential for improving the sensitivity of fluoroscopy, which has been widely used in protein and nucleic acid detection for biosensor and bioassay applications. In comparison with the traditional glass-supported metal nanoparticles (MNPs), the introduction of a silicon substrate has been shown to provide an increased surface-enhanced Raman scattering (SERS) effect due to the coupling between the MNPs and the semiconducting silicon substrate. In this work, we further study the fluorescence-enhanced effect of the silicon-supported silver-island (Ag@Si) plasmonic chips. In particular, we investigate their practical application of improving the traditional immunoassay such as the biotin-streptavidin-based protein assay and the protein-/nucleic acid-labeled cell and tissue samples. The protein assay shows a wavelength-dependent enhancement effect of the Ag@Si chip, with an enhancement factor ranging from 1.2 (at 532 nm) to 57.3 (at 800 nm). Moreover, for the protein- and nucleic acid-labeled cell and tissue samples, the Ag@Si chip provides a fluorescence enhancement factor of 3.0-4.1 (at 800 nm) and a significant improvement in the signal/background ratio for the microscopy images. Such a ready accommodation of the fluorescence-enhanced effect for the immunoassay samples with simple manipulations indicates broad potential for applications of the Ag@Si chip not only in biological studies but also in the clinical field. Copyright © 2016 Elsevier B.V. All rights reserved.

  17. Optimized distance-dependent atom-pair-based potential DOOP for protein structure prediction.

    Science.gov (United States)

    Chae, Myong-Ho; Krull, Florian; Knapp, Ernst-Walter

    2015-05-01

    The DOcking decoy-based Optimized Potential (DOOP) energy function for protein structure prediction is based on empirical distance-dependent atom-pair interactions. To optimize the atom-pair interactions, native protein structures are decomposed into polypeptide chain segments that correspond to structural motives involving complete secondary structure elements. They constitute near native ligand-receptor systems (or just pairs). Thus, a total of 8609 ligand-receptor systems were prepared from 954 selected proteins. For each of these hypothetical ligand-receptor systems, 1000 evenly sampled docking decoys with 0-10 Å interface root-mean-square-deviation (iRMSD) were generated with a method used before for protein-protein docking. A neural network-based optimization method was applied to derive the optimized energy parameters using these decoys so that the energy function mimics the funnel-like energy landscape for the interaction between these hypothetical ligand-receptor systems. Thus, our method hierarchically models the overall funnel-like energy landscape of native protein structures. The resulting energy function was tested on several commonly used decoy sets for native protein structure recognition and compared with other statistical potentials. In combination with a torsion potential term which describes the local conformational preference, the atom-pair-based potential outperforms other reported statistical energy functions in correct ranking of native protein structures for a variety of decoy sets. This is especially the case for the most challenging ROSETTA decoy set, although it does not take into account side chain orientation-dependence explicitly. The DOOP energy function for protein structure prediction, the underlying database of protein structures with hypothetical ligand-receptor systems and their decoys are freely available at http://agknapp.chemie.fu-berlin.de/doop/. © 2015 Wiley Periodicals, Inc.

  18. Lab on a chip genotyping for Brucella spp. based on 15-loci multi locus VNTR analysis.

    Science.gov (United States)

    De Santis, Riccardo; Ciammaruconi, Andrea; Faggioni, Giovanni; D'Amelio, Raffaele; Marianelli, Cinzia; Lista, Florigio

    2009-04-07

    Brucellosis is an important zoonosis caused by the genus Brucella. In addition Brucella represents potential biological warfare agents due to the high contagious rates for humans and animals. Therefore, the strain typing epidemiological tool may be crucial for tracing back source of infection in outbreaks and discriminating naturally occurring outbreaks versus bioterroristic event. A Multiple Locus Variable-number tandem repeats (VNTR) Analysis (MLVA) assay based on 15 polymorphic markers was previously described. The obtained MLVA band profiles may be resolved by techniques ranging from low cost manual agarose gels to the more expensive capillary electrophoresis sequencing. In this paper a rapid, accurate and reproducible system, based on the Lab on a chip technology was set up for Brucella spp. genotyping. Seventeen DNA samples of Brucella strains isolated in Sicily, previously genotyped, and twelve DNA samples, provided by MLVA Brucella VNTR ring trial, were analyzed by MLVA-15 on Agilent 2100. The DNA fragment sizes produced by Agilent, compared with those expected, showed discrepancies; therefore, in order to assign the correct alleles to the Agilent DNA fragment sizes, a conversion table was produced. In order to validate the system twelve unknown DNA samples were analyzed by this method obtaining a full concordance with the VNTR ring trial results. In this paper we described a rapid and specific detection method for the characterization of Brucella isolates. The comparison of the MLVA typing data produced by Agilent system with the data obtained by standard sequencing or ethidium bromide slab gel electrophoresis showed a general concordance of the results. Therefore this platform represents a fair compromise among costs, speed and specificity compared to any conventional molecular typing technique.

  19. Protein functionalized carbon nanotubes-based smart lab-on-a-chip.

    Science.gov (United States)

    Ali, Md Azahar; Solanki, Pratima R; Srivastava, Saurabh; Singh, Samer; Agrawal, Ved V; John, Renu; Malhotra, Bansi D

    2015-03-18

    A label-free impedimetric lab on a chip (iLOC) is fabricated using protein (bovine serum albumin) and antiapolipoprotein B functionalized carbon nanotubes-nickel oxide (CNT-NiO) nanocomposite for low-density lipoprotein (LDL) detection. The antiapolipoprotein B (AAB) functionalized CNT-NiO microfluidic electrode is assembled with polydimethylsiloxane rectangular microchannels (cross section: 100 × 100 μm). Cytotoxicity of the synthesized CNTs, NiO nanoparticles, and CNT-NiO nanocomposite has been investigated in the presence of lung epithelial cancer A549 cell line using MTT assay. The CNT-NiO nanocomposite shows higher cell viability at a concentration of 6.5 μg/mL compared to those using individual CNTs. The cell viability and proliferation studies reveal that the toxicity increases with increasing CNTs concentration. The X-ray photoelectron spectroscopy studies have been used to quantify the functional groups present on the CNT-NiO electrode surface before and after proteins functionalization. The binding kinetic and electrochemical activities of CNT-NiO based iLOC have been conducted using chronocoulometry and impedance spectroscopic techniques. This iLOC shows excellent sensitivity of 5.37 kΩ (mg/dL)(-1) and a low detection limit of 0.63 mg/dL in a wide concentration range (5-120 mg/dL) of LDL. The binding kinetics of antigen-antibody interaction of LDL molecules reveal a high association rate constant (8.13 M(-1) s(-1)). Thus, this smart nanocomposite (CNT-NiO) based iLOC has improved stability and reproducibility and has implications toward in vivo diagnostics.

  20. Lab on a chip genotyping for Brucella spp. based on 15-loci multi locus VNTR analysis

    Directory of Open Access Journals (Sweden)

    Marianelli Cinzia

    2009-04-01

    Full Text Available Abstract Background Brucellosis is an important zoonosis caused by the genus Brucella. In addition Brucella represents potential biological warfare agents due to the high contagious rates for humans and animals. Therefore, the strain typing epidemiological tool may be crucial for tracing back source of infection in outbreaks and discriminating naturally occurring outbreaks versus bioterroristic event. A Multiple Locus Variable-number tandem repeats (VNTR Analysis (MLVA assay based on 15 polymorphic markers was previously described. The obtained MLVA band profiles may be resolved by techniques ranging from low cost manual agarose gels to the more expensive capillary electrophoresis sequencing. In this paper a rapid, accurate and reproducible system, based on the Lab on a chip technology was set up for Brucella spp. genotyping. Results Seventeen DNA samples of Brucella strains isolated in Sicily, previously genotyped, and twelve DNA samples, provided by MLVA Brucella VNTR ring trial, were analyzed by MLVA-15 on Agilent 2100. The DNA fragment sizes produced by Agilent, compared with those expected, showed discrepancies; therefore, in order to assign the correct alleles to the Agilent DNA fragment sizes, a conversion table was produced. In order to validate the system twelve unknown DNA samples were analyzed by this method obtaining a full concordance with the VNTR ring trial results. Conclusion In this paper we described a rapid and specific detection method for the characterization of Brucella isolates. The comparison of the MLVA typing data produced by Agilent system with the data obtained by standard sequencing or ethidium bromide slab gel electrophoresis showed a general concordance of the results. Therefore this platform represents a fair compromise among costs, speed and specificity compared to any conventional molecular typing technique.

  1. Experimental Implementation of a Model-Based Inverse Filter to Attenuate Hysteresis in an Atomic Force Microscope

    National Research Council Canada - National Science Library

    Hatch, Andrew; Smith, Ralph G; De, Tathagata

    2004-01-01

    This paper addresses the development and experimental validation of a model-based, open loop control design for mitigating the frequency-dependent effects of hysteresis in an atomic force microscope (AFM...

  2. A low latency and high efficient three-dimension Network-on-Chip based on hierarchical structure

    Science.gov (United States)

    Zhu, Chen; Zhao, Huatao; Chen, Tinghuan; Zhu, Tianbo

    2017-07-01

    Currently, the majority of the Network-on-Chip (NoC) researches are based on 2D algorithm or simple 3D structure. However, the congestion and faulty links in the topology can increase the latency and power consumption. In this paper, the authors try to build a novel 3D topology based on hierarchical structure and TSV links which can reduce the latency and power consumption by decreasing the hops during the process of passing the packets. We employ the C++ tool to test our method, and the results show that the performance can be improved about 21%-36% in throughput, also 3%-11% in latency.

  3. Chip-Based Measurements of Brownian Relaxation of Magnetic Beads Using a Planar Hall Effect Magnetic Field Sensor

    DEFF Research Database (Denmark)

    Østerberg, Frederik Westergaard; Dalslet, Bjarke Thomas; Snakenborg, Detlef

    2010-01-01

    We present a simple 'click-on' fluidic system with integrated electrical contacts, which is suited for electrical measurements on chips in microfluidic systems. We show that microscopic magnetic field sensors based on the planar Hall effect can be used for detecting the complex magnetic response...... using only the self-field arising from the bias current applied to the sensors as excitation field. We present measurements on a suspension of magnetic beads with a nominal diameter of 250 nm vs. temperature and find that the observations are consistent with the Cole-Cole model for Brownian relaxation...... biosensor based on the detection of the dynamic response of magnetic beads....

  4. Atomic scale properties of magnetic Mn-based alloys probed by emission Mössbauer spectroscopy

    CERN Multimedia

    Mn-based alloys are characterized by a wealth of properties, which are of interest both from fundamental physics point of view and particularly attractive for different applications in modern technology: from magnetic storage to sensing and spin-based electronics. The possibility to tune their magnetic properties through post-growth thermal processes and/or stoichiometry engineering is highly important in order to target different applications (i.e. Mn$_{x}$Ga) or to increase their Curie temperature above room temperature (i.e. off-stoichiometric MnSi). In this project, the Mössbauer effect will be applied at $^{57}$Fe sites following implantation of radioactive $^{57}$Mn, to probe the micro-structure and magnetism of Mn-based alloys on the atomic-scale. The proposed experimental plan is devoted to establish a direct correlation between the local structure and bulk magnetism (and other physical properties) of Mn-based alloys.

  5. Optically pumped semiconductor lasers for atomic and molecular physics

    Science.gov (United States)

    Burd, S.; Leibfried, D.; Wilson, A. C.; Wineland, D. J.

    2015-03-01

    Experiments in atomic, molecular and optical (AMO) physics rely on lasers at many different wavelengths and with varying requirements on spectral linewidth, power and intensity stability. Optically pumped semiconductor lasers (OPSLs), when combined with nonlinear frequency conversion, can potentially replace many of the laser systems currently in use. We are developing a source for laser cooling and spectroscopy of Mg+ ions at 280 nm, based on a frequency quadrupled OPSL with the gain chip fabricated at the ORC at Tampere Univ. of Technology, Finland. This OPSL system could serve as a prototype for many other sources used in atomic and molecular physics.

  6. Guest-cage atomic interactions in a clathrate-based phase-change material.

    Science.gov (United States)

    Loke, Desmond; Skelton, Jonathan M; Law, Leong-Tat; Wang, Wei-Jie; Li, Ming-Hua; Song, Wen-Dong; Lee, Tae-Hoon; Elliott, Stephen R

    2014-03-19

    New clathrate-based phase-change materials with cage-like structures incorporating Cs and Ba guest atoms, are reported as a means of altering crystallization and amorphization behavior by controlling 'guest-cage' interactions via intra-complex guest vibrational effects. Both a high resistance to spontaneous crystallization, and long retention of the amorphous phase are achieved, as well as a low melting energy. This approach provides a route for achieving cage-controlled semiconductor devices. © 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  7. Athermalization in atomic force microscope based force spectroscopy using matched microstructure coupling.

    Science.gov (United States)

    Torun, H; Finkler, O; Degertekin, F L

    2009-07-01

    The authors describe a method for athermalization in atomic force microscope (AFM) based force spectroscopy applications using microstructures that thermomechanically match the AFM probes. The method uses a setup where the AFM probe is coupled with the matched structure and the displacements of both structures are read out simultaneously. The matched structure displaces with the AFM probe as temperature changes, thus the force applied to the sample can be kept constant without the need for a separate feedback loop for thermal drift compensation, and the differential signal can be used to cancel the shift in zero-force level of the AFM.

  8. Atomic force microscopy based nanoindentation study of onion abaxial epidermis walls in aqueous environment

    Energy Technology Data Exchange (ETDEWEB)

    Xi, Xiaoning; Tittmann, Bernhard [Department of Engineering Science and Mechanics, Pennsylvania State University, University Park, Pennsylvania 16802 (United States); Kim, Seong H. [Department of Chemical Engineering, Pennsylvania State University, University Park, Pennsylvania 16802 (United States)

    2015-01-14

    An atomic force microscopy based nanoindentation method was employed to study how the structure of cellulose microfibril packing and matrix polymers affect elastic modulus of fully hydrated primary plant cell walls. The isolated, single-layered abaxial epidermis cell wall of an onion bulb was used as a test system since the cellulose microfibril packing in this cell wall is known to vary systematically from inside to outside scales and the most abundant matrix polymer, pectin, can easily be altered through simple chemical treatments such as ethylenediaminetetraacetic acid and calcium ions. Experimental results showed that the pectin network variation has significant impacts on the cell wall modulus, and not the cellulose microfibril packing.

  9. Programming a multicore architecture without coherency and atomic operations

    NARCIS (Netherlands)

    Rutgers, J.H.; Bekooij, Marco Jan Gerrit; Smit, Gerardus Johannes Maria

    2014-01-01

    It is hard to reason about the state of a multicore system-on-chip, because operations on memory need multiple cycles to complete, since cores communicate via an interconnect like a network-on-chip. To simplify programming, atomicity is required, by means of atomic read-modify-write (RMW)

  10. Crystallization and atomic diffusion behavior of high coercive Ta/Nd-Fe-B/Ta-based permanent magnetic thin film

    Energy Technology Data Exchange (ETDEWEB)

    Tian, Na; Zhang, Xiao; You, Caiyin; Fu, Huarui [Xi' an University of Technology, School of Materials Science and Engineering, Xi' an (China); Shen, Qianlong [Logistics University of People' s Armed Police Force, Tianjin (China)

    2017-06-15

    A high coercivity of about 20.4 kOe was obtained through post-annealing the sputtered Ta/Nd-Fe-B/Ta-based permanent magnetic thin films. Transmission electron microscopy (TEM) and X-ray photoelectron spectroscopy (XPS) analyses were performed to investigate the crystallization and atomic diffusion behaviors during post-annealing. The results show that the buffer and capping Ta layers prefered to intermix with Fe and B atoms, and Nd tends to be combined with O atoms. The preferred atomic combination caused the appearance of the soft magnetic phase of Fe-Ta-B, resulting in a kink of the second quadratic magnetic hysteresis loop. The preferred atomic diffusion and phase formation of the thin films were well explained in terms of the formation enthalpy of the various compounds. (orig.)

  11. Cell Monitoring and Manipulation Systems (CMMSs based on Glass Cell-Culture Chips (GC3s

    Directory of Open Access Journals (Sweden)

    Sebastian M. Buehler

    2016-06-01

    Full Text Available We developed different types of glass cell-culture chips (GC3s for culturing cells for microscopic observation in open media-containing troughs or in microfluidic structures. Platinum sensor and manipulation structures were used to monitor physiological parameters and to allocate and permeabilize cells. Electro-thermal micro pumps distributed chemical compounds in the microfluidic systems. The integrated temperature sensors showed a linear, Pt1000-like behavior. Cell adhesion and proliferation were monitored using interdigitated electrode structures (IDESs. The cell-doubling times of primary murine embryonic neuronal cells (PNCs were determined based on the IDES capacitance-peak shifts. The electrical activity of PNC networks was detected using multi-electrode arrays (MEAs. During seeding, the cells were dielectrophoretically allocated to individual MEAs to improve network structures. MEA pads with diameters of 15, 20, 25, and 35 µm were tested. After 3 weeks, the magnitudes of the determined action potentials were highest for pads of 25 µm in diameter and did not differ when the inter-pad distances were 100 or 170 µm. Using 25-µm diameter circular oxygen electrodes, the signal currents in the cell-culture media were found to range from approximately −0.08 nA (0% O2 to −2.35 nA (21% O2. It was observed that 60-nm thick silicon nitride-sensor layers were stable potentiometric pH sensors under cell-culture conditions for periods of days. Their sensitivity between pH 5 and 9 was as high as 45 mV per pH step. We concluded that sensorized GC3s are potential animal replacement systems for purposes such as toxicity pre-screening. For example, the effect of mefloquine, a medication used to treat malaria, on the electrical activity of neuronal cells was determined in this study using a GC3 system.

  12. Human cell chips: adapting DNA microarray spotting technology to cell-based imaging assays.

    Directory of Open Access Journals (Sweden)

    Traver Hart

    Full Text Available Here we describe human spotted cell chips, a technology for determining cellular state across arrays of cells subjected to chemical or genetic perturbation. Cells are grown and treated under standard tissue culture conditions before being fixed and printed onto replicate glass slides, effectively decoupling the experimental conditions from the assay technique. Each slide is then probed using immunofluorescence or other optical reporter and assayed by automated microscopy. We show potential applications of the cell chip by assaying HeLa and A549 samples for changes in target protein abundance (of the dsRNA-activated protein kinase PKR, subcellular localization (nuclear translocation of NFkappaB and activation state (phosphorylation of STAT1 and of the p38 and JNK stress kinases in response to treatment by several chemical effectors (anisomycin, TNFalpha, and interferon, and we demonstrate scalability by printing a chip with approximately 4,700 discrete samples of HeLa cells. Coupling this technology to high-throughput methods for culturing and treating cell lines could enable researchers to examine the impact of exogenous effectors on the same population of experimentally treated cells across multiple reporter targets potentially representing a variety of molecular systems, thus producing a highly multiplexed dataset with minimized experimental variance and at reduced reagent cost compared to alternative techniques. The ability to prepare and store chips also allows researchers to follow up on observations gleaned from initial screens with maximal repeatability.

  13. Validation of a fully autonomous phosphate analyser based on a microfluidic lab-on-a-chip

    DEFF Research Database (Denmark)

    Slater, Conor; Cleary, J.; Lau, K.T.

    2010-01-01

    This work describes the design of a phosphate analyser that utilises a microfluidic lab-on-a-chip. The analyser contains all the required chemical storage, pumping and electronic components to carry out a complete phosphate assay. The system is self-calibrating and self-cleaning, thus capable...

  14. Test-Access Planning and Test Scheduling for Embedded Core-Based System Chips

    NARCIS (Netherlands)

    Goel, Sandeep Kumar

    2005-01-01

    Advances in the semiconductor process technology enable the creation of a complete system on one single die, the so-called system chip or SOC. To reduce time-to-market for large SOCs, reuse of pre-designed and pre-veried blocks called cores is employed. Like the design style, testing of SOCs can be

  15. On-chip tunable long-period grating devices based on liquid crystal photonic bandgap fibers

    DEFF Research Database (Denmark)

    Wei, Lei; Weirich, Johannes; Alkeskjold, Thomas Tanggaard

    2009-01-01

    We design and fabricate an on-chip tunable long-period grating device by integrating a liquid crystal photonic bandgap fiber on silicon structures. The transmission axis of the device can be electrically rotated in steps of 45° as well as switched on and off with the response time...

  16. Refractive index-based detection of gradient elution liquid chromatography using chip-integrated microring resonator arrays.

    Science.gov (United States)

    Wade, James H; Bailey, Ryan C

    2014-01-07

    Refractive index-based sensors offer attractive characteristics as nondestructive and universal detectors for liquid chromatographic separations, but a small dynamic range and sensitivity to minor thermal perturbations limit the utility of commercial RI detectors for many potential applications, especially those requiring the use of gradient elutions. As such, RI detectors find use almost exclusively in sample abundant, isocratic separations when interfaced with high-performance liquid chromatography. Silicon photonic microring resonators are refractive index-sensitive optical devices that feature good sensitivity and tremendous dynamic range. The large dynamic range of microring resonators allows the sensors to function across a wide spectrum of refractive indices, such as that encountered when moving from an aqueous to organic mobile phase during a gradient elution, a key analytical advantage not supported in commercial RI detectors. Microrings are easily configured into sensor arrays, and chip-integrated control microrings enable real-time corrections of thermal drift. Thermal controls allow for analyses at any temperature and, in the absence of rigorous temperature control, obviates extended detector equilibration wait times. Herein, proof of concept isocratic and gradient elution separations were performed using well-characterized model analytes (e.g., caffeine, ibuprofen) in both neat buffer and more complex sample matrices. These experiments demonstrate the ability of microring arrays to perform isocratic and gradient elutions under ambient conditions, avoiding two major limitations of commercial RI-based detectors and maintaining comparable bulk RI sensitivity. Further benefit may be realized in the future through selective surface functionalization to impart degrees of postcolumn (bio)molecular specificity at the detection phase of a separation. The chip-based and microscale nature of microring resonators also make it an attractive potential detection

  17. Extended QoS modelling based on multi-application environment in network on chip

    Science.gov (United States)

    Saadaoui, Abdelkader; Nasri, Salem

    2015-01-01

    Until now, there is no standard method of the quality of service (QoS) measurement and fewer techniques have been used to provide its definition. Therefore, researchers are looking for a projection of QoS on quantifiable space, since it is qualitative, subjective and not measurable. However, a few tentatives have studied QoS parameter estimation. Many applications in network on chip (NoC) present variable QoS parameters such as packet loss rate (PLR), end-to-end delay (EED) and throughput (Thp). However, there are a few papers that have developed different methods to modelise QoS in NoC. Their QoS presentation does not provide a multi-application parameter arbiter. Independently of the approach used, an important challenge associated with QoS provision is the development of an efficient and flexible way to monitor QoS. The originality of our approach is based on a proposition of a QoS-intellectual property module in NoC architecture to improve network performances. We implement an extended approach of QoS metrics modelling for NoC on multi-parameter and multi-application environment. The QoS metrics model is based on QoS parameters such as PLR, EED and Thp for different applications. To validate this work, a dynamic routing simulation for 4 × 4 mesh NoC behaviour under three different applications, namely transmission control protocol, variable bit rate and constant bit rate, is considered. To achieve an ideal network behaviour, load balancing on NoC with multiple concurrent applications is improved using QoS metrics measurement based on dynamic routing. The results have shown that extended QoS modelling approach is easy and cheap to implement in hardware-software quantifiable representation. Thus, implementing a quantifiable representation of QoS can be used to provide a NoC services arbiter. QoS arbiter interacts with other routers to ensure flit flow and QoS modelling to provide a QoS value.

  18. Towards Demonstration of a MOT-Based Continuous Cold CS-Beam Atomic Clock

    National Research Council Canada - National Science Library

    Wang, H; Camparo, J. C; Iyanu, G

    2007-01-01

    ... (MOT). This technique has the unique advantage of generating a useful cold atomic beam just outside the volume of a MOT and, hence, can greatly reduce the size of the atomic clock physics package...

  19. DNA Chip

    Indian Academy of Sciences (India)

    involved in the pathology of schizophrenia. In the human ge- nome, the ratio between coding and non-coding DNA is very low (less than 3% of the human .... construction of a Tm-specific chip, i.e. all the oligos/cDNA on the chip will hybridize at the same temperature. The techniques available are still not able to create a chip ...

  20. An OCP Compliant Network Adapter for GALS-based SoC Design Using the MANGO Network-on-Chip

    DEFF Research Database (Denmark)

    Bjerregaard, Tobias; Mahadevan, Shankar; Olsen, Rasmus Grøndahl

    2005-01-01

    The demand for IP reuse and system level scalability in System-on-Chip (SoC) designs is growing. Network-onchip (NoC) constitutes a viable solution space to emerging SoC design challenges. In this paper we describe an OCP compliant network adapter (NA) architecture for the MANGO NoC. The NA...... decouples communication and computation, providing memory-mapped OCP transactions based on primitive message-passing services of the network. Also, it facilitates GALS-type systems, by adapting to the clockless network. This helps leverage a modular SoC design flow. We evaluate performance and cost of 0...

  1. Optical design of a street lamp based on dual-module chip-on-board LED arrays.

    Science.gov (United States)

    Ge, Aiming; Cai, Jinlin; Chen, Dehua; Shu, Hongyun; Qiu, Peng; Wang, Junwei; Zhu, Ling

    2014-09-01

    We design and propose a compact street lamp based on dual-module chip-on-board LED. The street lamp is composed of six faceted reflectors. It can direct the luminous flux and form uniform illumination on the target area, and it effectively reduces power consumption. We have conducted both simulations and prototype measurements. The test results show good optical performance in that the uniformity of luminance reaches 0.58 for LED lamp zigzag arrangements and 0.60 for LED lamp double-side arrangements. The average luminance can fulfill the requirements in Chinese road lighting Standard CJJ45-2006.

  2. Effects of doping of calcium atom(s) on structural, electronic and optical properties of binary strontium chalcogenides - A theoretical investigation using DFT based FP-LAPW methodology

    Science.gov (United States)

    Bhattacharjee, Rahul; Chattopadhyaya, Surya

    2017-09-01

    The effects of doping of Ca atom(s) on structural, electronic and optical properties of binary strontium chalcogenide semiconductor compounds have been investigated theoretically using DFT based FP-LAPW approach by modeling the rock-salt (B1) ternary alloys CaxSr1-xS, CaxSr1-xSe and CaxSr1-xTe at some specific concentrations 0 ≤ x ≤ 1 and studying their aforesaid properties. The exchange-correlation potentials for their structural properties have been computed using the Wu-Cohen generalized-gradient approximation (WC-GGA) scheme, while those for the electronic and optical properties have been computed using recently developed Tran-Blaha modified Becke-Johnson (TB-mBJ) scheme. In addition, we have computed the electronic and optical properties with the traditional BLYP and PBE-GGA schemes for comparison. The atomic and orbital origin of different electronic states in the band structure of each of the compounds have been identified from the respective density of states (DOS). Using the approach of Zunger and co-workers, the microscopic origin of band gap bowing has been discussed in term of volume deformation, charge exchange and structural relaxation. Bonding characteristics among the constituent atoms of each of the specimens have been discussed from their charge density contour plots. Optical properties of the binary compounds and ternary alloys have been investigated theoretically in terms of their respective dielectric function, refractive index, normal incidence reflectivity and optical conductivity. Several calculated results have been compared with available experimental and other theoretical data.

  3. A Novel Graphene Oxide-Based Protein Interaction Measurement Using Atomic Force Microscopy.

    Science.gov (United States)

    Han, Sung-Woong; Morita, Kyohei; Adachi, Taiji

    2015-02-01

    Graphene oxide (GO) is a promising material for biological applications because of its excellent physical/chemical properties such as aqueous processability, amphiphilicity, and surface functionalizability. Here we introduce a new biological application of GO, a novel GO-based technique for probing protein interactions using atomic force microscopy (AFM). GO sheets were intercalated between the protein-modified AFM probe and the polymer substrate in order to reduce the non-specific adhesion force observed during single-molecule force spectroscopy (SMFS). In this study, we used SMFS to probe the interaction of the actin filament and actin-related protein 2/3 complex (Arp2/3), an actin-binding protein. Our results confirm that the GO sheet reduces nonspecific adhesion of the probe to the substrate. Using the GO-based technique, we succeeded in estimating the dissociation constant of the actin filament-binding protein interaction.

  4. Electrical tomography using atomic force microscopy and its application towards carbon nanotube-based interconnects.

    Science.gov (United States)

    Schulze, A; Hantschel, T; Dathe, A; Eyben, P; Ke, X; Vandervorst, W

    2012-08-03

    The fabrication and integration of low-resistance carbon nanotubes (CNTs) for interconnects in future integrated circuits requires characterization techniques providing structural and electrical information at the nanometer scale. In this paper we present a slice-and-view approach based on electrical atomic force microscopy. Material removal achieved by successive scanning using doped ultra-sharp full-diamond probes, manufactured in-house, enables us to acquire two-dimensional (2D) resistance maps originating from different depths (equivalently different CNT lengths) on CNT-based interconnects. Stacking and interpolating these 2D resistance maps results in a three-dimensional (3D) representation (tomogram). This allows insight from a structural (e.g. size, density, distribution, straightness) and electrical point of view simultaneously. By extracting the resistance evolution over the length of an individual CNT we derive quantitative information about the resistivity and the contact resistance between the CNT and bottom electrode.

  5. Multiscale modeling and experimental validation for nanochannel depth control in atomic force microscopy-based nanofabrication

    Energy Technology Data Exchange (ETDEWEB)

    Ren, Jiaqi; Liu, Pinkuan, E-mail: pkliu@sjtu.edu.cn; Zhu, Xiaobo; Zhang, Fan; Chen, Guozhen [State Key Laboratory of Mechanical System and Vibration, School of Mechanical Engineering, Shanghai Jiao Tong University, Shanghai 200240 (China)

    2014-08-21

    Nanochannels are essential features of many microelectronic and biomedical devices. To date, the most commonly employed method to fabricate these nanochannels is atomic force microscopy (AFM). However, there is presently a very poor understanding on the fundamental principles underlying this process, which limits its reliability and controllability. In this study, we present a comprehensive multiscale model by incorporating strain gradient plasticity and strain gradient elasticity theories, which can predict nanochannel depths during AFM-based nanofabrication. The modeling results are directly verified with experiments performed on Cu and Pt substrates. As this model can also be extended to include many additional conditions, it has broad applicability in a wide range of AFM-based nanofabrication applications.

  6. Graphene Oxide-Poly(dimethylsiloxane)-Based Lab-on-a-Chip Platform for Heavy-Metals Preconcentration and Electrochemical Detection.

    Science.gov (United States)

    Chałupniak, Andrzej; Merkoçi, Arben

    2017-12-27

    Herein, we present the application of a novel graphene oxide-poly(dimethylsiloxane) (GO-PDMS) composite in reversible adsorption/desorption, including detection of heavy metals. GO-PDMS was fabricated by simple blending of GO with silicon monomer in the presence of tetrahydrofuran, followed by polymerization initiated upon the addition of curing agent. We found GO concentration, curing agent concentration, pH, and contact time among the most important factors affecting the adsorption of Pb(II) used as a model heavy metal. The mechanism of adsorption is based on surface complexation, where oxygen active groups of negative charge can bind with bivalent metal ions Me(II). To demonstrate a practical application of this material, we fabricated microfluidic lab-on-a-chip platform for heavy-metals preconcentration and detection. This device consists of a screen-printed carbon electrode, a PDMS chip, and a GO-PDMS chip. The use of GO-PDMS preconcentration platform significantly improves the sensitivity of electrochemical detection of heavy metals (an increase of current up to 30× was observed), without the need of modifying electrodes or special reagents addition. Therefore, samples being so far below the limit of detection (0.5 ppb) were successfully detected. This approach is compatible also with real samples (seawater) as ionic strength was found as indifferent for the adsorption process. To the best of our knowledge, GO-PDMS was used for the first time in sensing application. Moreover, due to mechanical resistance and outstanding durability, it can be used multiple times unlike other GO-based platforms for heavy-metals adsorption.

  7. A versatile polydopamine platform for facile preparation of protein stationary phase for chip-based open tubular capillary electrochromatography enantioseparation.

    Science.gov (United States)

    Liu, Chun-Ming; Liang, Ru-Ping; Wang, Xiao-Ni; Wang, Jing-Wu; Qiu, Jian-Ding

    2013-06-14

    A novel, simple, and economical method for the preparation of chiral stationary phases for chip-based enantioselective open tubular capillary electrochromatography (OT-CEC) using polydopamine (PDA) coating as an adhesive layer was reported for the first time. After the poly(dimethylsiloxane) (PDMS) microfluidic chip was filled with dopamine (DA) solution, PDA film was gradually formed and deposited on the inner wall of microchannel as permanent coating via the oxidation of DA by the oxygen dissolved in the solution. Due to possessing plentiful catechol and amine functional groups, PDA coating can serve as a versatile multifunctional platform for further secondary reactions, leading to tailoring of the coatings for protein bioconjugation by the thiols and amines via Michael addition or Schiff base reactions. Bovine serum albumin (BSA), acting as a target protein, was then stably and homogeneously immobilized in the PDA-coated PDMS microchannel to fabricate a novel protein stationary phase. Compared with the native PDMS microchannels, the modified surfaces exhibited much better wettability, more stable and enhanced electroosmotic mobility, and less nonspecific adsorption. The water contact angle and electroosmotic flow of PDA/BSA-coated PDMS substrate were measured to be 44° and 2.83×10(-4)cm(2)V(-1)s(-1), compared to those of 112° and 2.10×10(-4)cm(2)V(-1)s(-1) from the untreated one, respectively. Under a mild condition, d- and l-tryptophan were efficiently separated with a resolution of 1.68 within 130s utilizing a separation length of 37mm coupled with in-column amperometric detection on the PDA/BSA-coated PDMS microchips. This present versatile platform, facile conjugation of biomolecules onto microchip surfaces via mussel adhesive protein inspired coatings, may offer new processing strategies to prepare a biomimetic surface design on microfluidic chips, which is promising in high-throughput and complex biological analysis. Copyright © 2013 Elsevier B

  8. Noncancer mortality based on the Hiroshima Atomic Bomb survivors registry over 30 years, 1968-1997

    Energy Technology Data Exchange (ETDEWEB)

    Kasagi, Keiko [Hiroshima Univ. (Japan). Research Inst. for Radiation Biology and Medicine

    2002-04-01

    The relation of radiation exposure with noncancer mortality was examined on 44,514 atomic bomb survivors (17,935 males, 26,579 females, and mean age 22.8{+-}15.7 yrs at the time of bombing) registered at Research Institute for Radiation Biology and Medicine, Hiroshima University, based on mortality follow-up over 30 years, 1968-1997. Noncancer mortality was significantly related to radiation dose with relative risk of 1.06 at 1 Sv radiation dose, although weaker than the dose response in solid cancer mortality. The significant dose responses were observed especially in circulatory disease, stroke and urinary organ disease, and suggestive dose response in pneumonia. The temporal pattern in dose response by age at the time of bombing indicated that the relative risk of noncancer mortality was higher with follow-up period, which is contrary to a decreasing dose response in solid cancer mortality with follow-up period. The tendency was remarkable in those survivors younger at the time of bombing. These findings suggest that the significant radiation risk observed in noncancer mortality might increase as the proportion of younger survivors among atomic bomb survivors increases. (author)

  9. Ta2O5- and TiO2-based nanostructures made by atomic layer deposition

    Science.gov (United States)

    Kemell, Marianna; Härkönen, Emma; Pore, Viljami; Ritala, Mikko; Leskelä, Markku

    2010-01-01

    Nanotubular Ta2O5- and TiO2-based structures were prepared by atomic layer deposition of Ta2O5 and TiO2 thin films, conformally on pore walls of porous alumina membranes. Both self-supporting alumina membranes and Si-supported thin-film membranes were studied as templates. Long Ta2O5 and TiO2 nanotubes were prepared successfully with the self-supporting membranes. The TiO2 nanotubes showed photocatalytic activity in methylene blue degradation under UV illumination. The Ta2O5 and TiO2 nanotubes were further modified by depositing Pt nanoparticles inside them. The Si-supported thin-film membranes were used as templates for the preparation of robust Ta2O5-coated Ni nanorod arrays on a Si substrate using electrodeposition, chemical etching and atomic layer deposition. In addition to photocatalysis, the nanostructures prepared in this work may find applications as other catalysts and as solid-state or electrochemical capacitors.

  10. A preliminary study on the identification of vehicle paint chip based on optical coherence tomography

    Science.gov (United States)

    Zhang, Ning; Li, Zhihui; Xu, Xiaojing; Huang, Wei; Xu, Lei; Guo, Jingjing; Xie, Lanchi

    2015-12-01

    Vehicle paint chip is a common evidence that plays a significant role in many criminal cases. This paper introduced a novel imaging technology - optical coherence tomography (OCT), which can realize non-invasive, rapid, high-resolution and cross-sectional imaging for the identification of vehicle paint chips. In this paper, a 1310nm swept-source OCT system was adopted to implement the paint imaging. The results show that, compared with conventional spectroscopy and SEM methods, OCT technology can directly obtain the tomographic images of the paints without slicing. In addition, the optical attenuation properties were analyzed to provide a new feature for separating different paint samples. The OCT technology and traditional methods can be combined to further narrow the scope of investigation, providing a comprehensive means to determine or rule out the suspect vehicles.

  11. Raman-Spectroscopy Based Cell Identification on a Microhole Array Chip

    Directory of Open Access Journals (Sweden)

    Ute Neugebauer

    2014-04-01

    Full Text Available Circulating tumor cells (CTCs from blood of cancer patients are valuable prognostic markers and enable monitoring responses to therapy. The extremely low number of CTCs makes their isolation and characterization a major technological challenge. For label-free cell identification a novel combination of Raman spectroscopy with a microhole array platform is described that is expected to support high-throughput and multiplex analyses. Raman spectra were registered from regularly arranged cells on the chip with low background noise from the silicon nitride chip membrane. A classification model was trained to distinguish leukocytes from myeloblasts (OCI-AML3 and breast cancer cells (MCF-7 and BT-20. The model was validated by Raman spectra of a mixed cell population. The high spectral quality, low destructivity and high classification accuracy suggests that this approach is promising for Raman activated cell sorting.

  12. A chip-based rapid genotyping assay to discriminate between rhinovirus species A, B and C.

    Science.gov (United States)

    Westerhuis, Brenda M; Wiewel, Maryse A; Ende, Alexander Am; van der Linden, Lonneke; Koekkoek, Sylvie M; Wolthers, Katja C; Landt, Olfert

    2017-12-08

    Human rhinoviruses (RVs) are increasingly associated with severe disease of the respiratory tract. Multiple studies highlighted the clinical significance of different RV species; RV-C is linked to asthma exacerbations and increased disease severity in children, whereas RV-B seems to correlate with milder disease. Current typing strategies for differentiation of RV species are time consuming and require extensive equipment. Here we present a novel genotyping tool to discriminate RV species A, B and C. The method encompasses a VP4/VP2 polymerase chain reaction (PCR), followed by hybridization of the product on a macro array with probes covering RV-A, B, and C, produced by Chipron as custom array. Validation was performed with respiratory specimens submitted for diagnostic evaluation to the Academic Medical Center. A selection of RV PCR-positive samples genotyped based on VP4/VP2 sequencing was evaluated. Diagnostic performance was tested on respiratory samples positive for RV in an in-house multiplex respiratory PCR from January 2016 to January 2017. In-house primers and additional genotype-specific primers were used for sequencing to investigate array-negative and array-double-positive samples. The majority of samples pretyped RVs (n = 135) were classified correctly, except for one that was assigned RV-C instead of RV-A, and 3 samples tested negative. The array gave four double-positive results; the presence of more than one genotype was confirmed in two samples. In 173/187 (92.5%) RV-positive tested patient samples from 2016, the test resulted in a designated species. RV species A was identified in 109 specimens (58.3%), RV-B in 26 (13.9%), and RV-C in 56 (29.9%) samples. Sequencing of the probe region of 14 (7.6%) negative samples revealed up to 3 mismatches to the probes for 12 samples; in 2 cases no PCR product was generated. Notably, in 18 samples the chip detected more than one species, of which 16 were confirmed by sequencing. The Chipron LCD RV array

  13. A microwave chip-based beam splitter for low-energy guided electrons

    OpenAIRE

    Hammer, Jakob; Thomas, Sebastian; Weber, Philipp; Hommelhoff, Peter

    2014-01-01

    We demonstrate the splitting of a low-energy electron beam by means of a microwave pseudopotential formed above a planar chip substrate. Beam splitting arises from smoothly transforming the transverse guiding potential for an electron beam from a single-well harmonic confinement into a double-well, thereby generating two separated output beams with $5\\,$mm lateral spacing. Efficient beam splitting is observed for electron kinetic energies up to $3\\,$eV, in excellent agreement with particle tr...

  14. Validation of a fully autonomous phosphate analyser based on a microfluidic lab-on-a-chip

    OpenAIRE

    Slater, Conor; Cleary, John; Lau, King-Tong; Snakenborg, D.; Corcoran, Brian; Kutter, J.P.; Diamond, Dermot

    2010-01-01

    This work describes the design of a phosphate analyser that utilises a microfluidic lab-on-a-chip. The analyser contains all the required chemical storage, pumping and electronic components to carry out a complete phosphate assay. The system is self-calibrating and self-cleaning, thus capable of long-term operation. This was proven by a bench top calibration of the analyser using standard solutions and also by comparing the analyser's performance to a commercially available phosphate monitor ...

  15. Defense Against Chip Cloning Attacks Based on Fractional Hopfield Neural Networks.

    Science.gov (United States)

    Pu, Yi-Fei; Yi, Zhang; Zhou, Ji-Liu

    2017-06-01

    This paper presents a state-of-the-art application of fractional hopfield neural networks (FHNNs) to defend against chip cloning attacks, and provides insight into the reason that the proposed method is superior to physically unclonable functions (PUFs). In the past decade, PUFs have been evolving as one of the best types of hardware security. However, the development of the PUFs has been somewhat limited by its implementation cost, its temperature variation effect, its electromagnetic interference effect, the amount of entropy in it, etc. Therefore, it is imperative to discover, through promising mathematical methods and physical modules, some novel mechanisms to overcome the aforementioned weaknesses of the PUFs. Motivated by this need, in this paper, we propose applying the FHNNs to defend against chip cloning attacks. At first, we implement the arbitrary-order fractor of a FHNN. Secondly, we describe the implementation cost of the FHNNs. Thirdly, we propose the achievement of the constant-order performance of a FHNN when ambient temperature varies. Fourthly, we analyze the electrical performance stability of the FHNNs under electromagnetic disturbance conditions. Fifthly, we study the amount of entropy of the FHNNs. Lastly, we perform experiments to analyze the pass-band width of the fractor of an arbitrary-order FHNN and the defense against chip cloning attacks capability of the FHNNs. In particular, the capabilities of defense against chip cloning attacks, anti-electromagnetic interference, and anti-temperature variation of a FHNN are illustrated experimentally in detail. Some significant advantages of the FHNNs are that their implementation cost is considerably lower than that of the PUFs, their electrical performance is much more stable than that of the PUFs under different temperature conditions, their electrical performance stability of the FHNNs under electromagnetic disturbance conditions is much more robust than that of the PUFs, and their amount of

  16. Formal Verification of Firmware-Based System-on-Chip Modules

    OpenAIRE

    Villarraga, Carlos

    2017-01-01

    In current practices of system-on-chip (SoC) design a trend can be observed to integrate more and more low-level software components into the system hardware at different levels of granularity. The implementation of important control functions and communication structures is frequently shifted from the SoC’s hardware into its firmware. As a result, the tight coupling of hardware and software at a low level of granularity raises substantial verification challenges since the conventional practi...

  17. Integrated lab-on-chip biosensing systems based on magnetic particle actuation--a comprehensive review.

    Science.gov (United States)

    van Reenen, Alexander; de Jong, Arthur M; den Toonder, Jaap M J; Prins, Menno W J

    2014-06-21

    The demand for easy to use and cost effective medical technologies inspires scientists to develop innovative lab-on-chip technologies for point-of-care in vitro diagnostic testing. To fulfill medical needs, the tests should be rapid, sensitive, quantitative, and miniaturizable, and need to integrate all steps from sample-in to result-out. Here, we review the use of magnetic particles actuated by magnetic fields to perform the different process steps that are required for integrated lab-on-chip diagnostic assays. We discuss the use of magnetic particles to mix fluids, to capture specific analytes, to concentrate analytes, to transfer analytes from one solution to another, to label analytes, to perform stringency and washing steps, and to probe biophysical properties of the analytes, distinguishing methodologies with fluid flow and without fluid flow (stationary microfluidics). Our review focuses on efforts to combine and integrate different magnetically actuated assay steps, with the vision that it will become possible in the future to realize integrated lab-on-chip biosensing assays in which all assay process steps are controlled and optimized by magnetic forces.

  18. Peroxynitrous-acid-induced chemiluminescence detection of nitrite based on Microfluidic chip.

    Science.gov (United States)

    Wu, Jing; Wang, Xiong; Lin, Yitong; Zheng, Yongzan; Lin, Jin-Ming

    2016-07-01

    A chemiluminescent method for nitrite detection was developed on microfluidic chip. Carbon dots-NaNO2(-) acidified H2O2 system was adopted. Chemiluminescence (CL) spectrum of this system was detected. The radiative recombination of hole-injected and electron-injected carbon dots explained their CL property. Spiral microchannels were designed on the microfluidic chip to allow enough reaction time for the carbon dots-NaNO2-acidified H2O2 system. Carbon dots and NaNO2 were premixed in the branch microchannel, then, the mixture reacted with acidified H2O2 in spiral microchannels. Concentrations of H2SO4 and H2O2, dilution ratio of carbon dots in H2O and flow rate were optimized to obtain the best CL signals. The approach presented satisfactory linear relationship between NaNO2 concentration and CL intensity. The tolerance of metal ions in determination of 1×10(-5)M nitrite was analyzed. The nitrites in water and beverage samples were successfully analyzed on the microfluidic chip with good repeatability. The data were well accordance with the results obtained from GB 5009.33(-) 2010. This microfluidic CL detection method is believed to be a simple, automatic and agent-save approach for inorganic ion analysis. Copyright © 2016 Elsevier B.V. All rights reserved.

  19. Dual fiber optical trapping in a polymer-based microfluidic chip

    Science.gov (United States)

    Ottevaere, Heidi; de Coster, Diane; Vervaeke, Michael; Van Erps, Jürgen; Callewaert, Manly; Wuytens, Pieter; De Malsche, Wim; Thienpont, Hugo

    2016-04-01

    We present a microfluidic chip in Polymethyl methacrylate (PMMA) for optical trapping of particles in an 80μm wide microchannel using two counterpropagating single-mode beams. The trapping fibers are separated from the sample fluid by 70μm thick polymer walls. We calculate the optical forces that act on particles flowing in the microchannel using wave optics in combination with non-sequential ray-tracing and further mathematical processing. We use a novel fabrication process that consists of a premilling step and ultraprecision diamond tooling for the manufacturing of the molds and double-sided hot embossing for replication, resulting in a robust microfluidic chip for optical trapping. In a proof-of-concept demonstration, we show the trapping capabilities of the hot embossed chip by trapping spherical beads with a diameter of 6μm, 8μm and 10μm and use the power spectrum analysis of the trapped particle displacements to characterize the trap strength.

  20. Evaluation of wood chip-based biofilters to reduce odor, hydrogen sulfide, and ammonia from swine barn ventilation air.

    Science.gov (United States)

    Chen, Lide; Hoff, Steven; Cai, Lingshuang; Koziel, Jacek; Zelle, Brian

    2009-05-01

    A pilot-scale biofilter was developed in which two types of wood chips (western cedar [WC] and 2-in. hardwood [HW]) were examined to treat odor emissions from a deep-pit swine finishing facility in central Iowa. The biofilters were operated continuously for 13 weeks at different airflow rates resulting in variable empty bed residence times (EBRTs) from 1.6 to 7.3 sec. The effects of three media moisture levels were also evaluated. A dynamic forced-choice olfactometer was used to evaluate odor concentrations from both the control (inlet) plenum and biofilter treatments (outlet). Hydrogen sulfide (H2S) and ammonia (NH3) concentrations were also measured from these olfactometry samples. Solid-phase microextraction (SPME) polydimethylsiloxane (PDMS)/divinylbenzene (DVB) 65-microm fibers were used to extract volatile organic compounds from both the control plenum and biofilter treatments. Analyses of separated odors were carried out using a gas chromatography-mass spectrometry-olfactometry (GC-MS-O) system. Static sample results indicated that both types of chips achieved significant reductions in odor (average 70.1 and 82.3% for HW and WC, respectively), H2S (average 81.8 and 88.6% for HW and WC, respectively) and NH3 (average 43.4 and 74% for HW and WC, respectively) concentrations. GC-MS-O aromagram results showed both treatments reached high odor reduction efficiency (average 99.4 and 99.8% for HW and WC, respectively). The results also showed that maintaining proper moisture content and a minimum EBRT are critical to the success of wood chip-based biofilters.

  1. Dynamic analysis of angiogenesis in transgenic zebrafish embryos using a 3D multilayer chip-based technology

    Science.gov (United States)

    Akagi, Jin; Zhu, Feng; Hall, Chris J.; Khoshmanesh, Khashayar; Kalantar-Zadeh, Kourosh; Mitchell, Arnan; Crosier, Kathryn E.; Crosier, Philip S.; Wlodkowic, Donald

    2013-03-01

    Transgenic zebrafish (Danio rerio) models of human diseases have recently emerged as innovative experimental systems in drug discovery and molecular pathology. None of the currently available technologies, however, allow for automated immobilization and treatment of large numbers of spatially encoded transgenic embryos during real-time developmental analysis. This work describes the proof-of-concept design and validation of an integrated 3D microfluidic chip-based system fabricated directly in the poly(methyl methacrylate) transparent thermoplastic using infrared laser micromachining. At its core, the device utilizes an array of 3D micro-mechanical traps to actively capture and immobilize single embryos using a low-pressure suction. It also features built-in piezoelectric microdiaphragm pumps, embryo trapping suction manifold, drug delivery manifold and optically transparent indium tin oxide (ITO) heating element to provide optimal temperature during embryo development. Furthermore, we present design of the proof-of-concept off-chip electronic interface equipped with robotic servo actuator driven stage, innovative servomotor-actuated pinch valves and miniaturized fluorescent USB microscope. Our results show that the innovative device has 100% embryo trapping efficiency while supporting normal embryo development for up to 72 hours in a confined microfluidic environment. We also present data that this microfluidic system can be readily applied to kinetic analysis of a panel of investigational anti-angiogenic agents in transgenic zebrafish Tg(fli1a:EGFP) line. The optical transparency and embryo immobilization allow for convenient visualization of developing vasculature patterns in response to drug treatment without the need for specimen re-positioning. The integrated electronic interfaces bring the Lab-on-a-Chip systems a step closer to realization of complete analytical automation.

  2. Liquid-phase microextraction in a microfluidic-chip

    DEFF Research Database (Denmark)

    Payán, María D. Ramos; Jensen, Henrik; Petersen, Nickolaj J.

    2012-01-01

    In this work, a microfluidic-chip based system for liquid-phase microextraction (LPME-chip) was developed. Sample solutions were pumped into the LPME-chip with a micro-syringe pump at a flow rate of 3-4µLmin(-1). Inside the LPME chip, the sample was in direct contact with a supported liquid...

  3. New Generation GridPix: Development and characterisation of pixelated gaseous detectors based on the Timepix3 chip

    CERN Document Server

    AUTHOR|(CDS)2082958; Hessey, Nigel

    Due to the increasing demands of high energy physics experiments there is a need for particle detectors which enable high precision measurements. In this regard, the GridPix detector is a novel detector concept which combines the benefits of a pixel chip with an integrated gas amplification structure. The resulting unit is a detector sensitive to single electrons with a great potential for particle tracking and energy loss measurements. This thesis is focusing on the development of a new generation of GridPix detectors based on the Timepix3 chip, which implements a high resolution Time to Digital Converter (TDC) in each pixel. After an introductory chapter describing the motivation behind GridPix, the manuscript presents the physics of gaseous detectors in chapter 2 along with the gaseous detectors used for particle tracking in chapter 3. Chapters 4 and 5 are focusing on the tracking performance of GridPix detectors. Chapter 4 presents results obtained with a GridPix detector based on a small scale prototy...

  4. A colorimetric detection of acrylamide in potato chips based on nucleophile-initiated thiol-ene Michael addition.

    Science.gov (United States)

    Hu, Qinqin; Fu, Yingchun; Xu, Xiahong; Qiao, Zhaohui; Wang, Ronghui; Zhang, Ying; Li, Yanbin

    2016-02-07

    Acrylamide (AA), a neurotoxin and a potential carcinogen, has been found in various thermally processed foods such as potato chips, biscuits, and coffee. Simple, cost-effective, and sensitive methods for the rapid detection of AA are needed to ensure food safety. Herein, a novel colorimetric method was proposed for the visual detection of AA based on a nucleophile-initiated thiol-ene Michael addition reaction. Gold nanoparticles (AuNPs) were aggregated by glutathione (GSH) because of a ligand-replacement, accompanied by a color change from red to purple. In the presence of AA, after the thiol-ene Michael addition reaction between GSH and AA with the catalysis of a nucleophile, the sulfhydryl group of GSH was consumed by AA, which hindered the subsequent ligand-replacement and the aggregation of AuNPs. Therefore, the concentration of AA could be determined by the visible color change caused by dispersion/aggregation of AuNPs. This new method showed high sensitivity with a linear range from 0.1 μmol L(-1) to 80 μmol L(-1) and a detection limit of 28.6 nmol L(-1), and especially revealed better selectivity than the fluorescence sensing method reported previously. Moreover, this new method was used to detect AA in potato chips with a satisfactory result in comparison with the standard methods based on chromatography, which indicated that the colorimetric method can be expanded for the rapid detection of AA in thermally processed foods.

  5. Chip based common-path optical coherence tomography system with an on-chip microlens and multi-reference suppression algorithm

    NARCIS (Netherlands)

    Chang, Lantian; Weiss, Nicolás; van Leeuwen, Ton G.; Pollnau, Markus; de Ridder, René M.; Wörhoff, Kerstin; Subramaniam, Vinod; Kanger, Johannes S.

    2016-01-01

    We demonstrate an integrated optical probe including an on-chip microlens for a common-path swept-source optical coherence tomography system. This common-path design uses the end facet of the silicon oxynitride waveguide as the reference plane, thus eliminating the need of a space-consuming and

  6. Chip based common-path optical coherence tomography system with an on-chip microlens and multi-reference suppresion algorithm

    NARCIS (Netherlands)

    Chang, Lantian; Weiss, Nicolas; van Leeuwen, Ton; Pollnau, Markus; de Ridder, R.M.; Worhoff, Kerstin; Subramaniam, Vinod; Kanger, Johannes S.

    2016-01-01

    We demonstrate an integrated optical probe including an on-chip microlens for a common-path swept-source optical coherence tomography system. This common-path design uses the end facet of the silicon oxynitride waveguide as the reference plane, thus eliminating the need of a space-consuming and

  7. On-Chip Magnetic Bead Manipulation and Detection Using a Magnetoresistive Sensor-Based Micro-Chip: Design Considerations and Experimental Characterization

    KAUST Repository

    Gooneratne, Chinthaka P.

    2016-08-26

    The remarkable advantages micro-chip platforms offer over cumbersome, time-consuming equipment currently in use for bio-analysis are well documented. In this research, a micro-chip that includes a unique magnetic actuator (MA) for the manipulation of superparamagnetic beads (SPBs), and a magnetoresistive sensor for the detection of SPBs is presented. A design methodology, which takes into account the magnetic volume of SPBs, diffusion and heat transfer phenomena, is presented with the aid of numerical analysis to optimize the parameters of the MA. The MA was employed as a magnetic flux generator and experimental analysis with commercially available COMPEL™ and Dynabeads® demonstrated the ability of the MA to precisely transport a small number of SPBs over long distances and concentrate SPBs to a sensing site for detection. Moreover, the velocities of COMPEL™ and Dynabead® SPBs were correlated to their magnetic volumes and were in good agreement with numerical model predictions. We found that 2.8 μm Dynabeads® travel faster, and can be attracted to a magnetic source from a longer distance, than 6.2 μm COMPEL™ beads at magnetic flux magnitudes of less than 10 mT. The micro-chip system could easily be integrated with electronic circuitry and microfluidic functions, paving the way for an on-chip biomolecule quantification device

  8. Current status and perspectives in atomic force microscopy-based identification of cellular transformation.

    Science.gov (United States)

    Dong, Chenbo; Hu, Xiao; Dinu, Cerasela Zoica

    2016-01-01

    Understanding the complex interplay between cells and their biomechanics and how the interplay is influenced by the extracellular microenvironment, as well as how the transforming potential of a tissue from a benign to a cancerous one is related to the dynamics of both the cell and its surroundings, holds promise for the development of targeted translational therapies. This review provides a comprehensive overview of atomic force microscopy-based technology and its applications for identification of cellular progression to a cancerous phenotype. The review also offers insights into the advancements that are required for the next user-controlled tool to allow for the identification of early cell transformation and thus potentially lead to improved therapeutic outcomes.

  9. Atomic Force Microscopy Based Nanorobotics Modelling, Simulation, Setup Building and Experiments

    CERN Document Server

    Xie, Hui; Régnier, Stéphane; Sitti, Metin

    2012-01-01

    The atomic force microscope (AFM) has been successfully used to perform nanorobotic manipulation operations on nanoscale entities such as particles, nanotubes, nanowires, nanocrystals, and DNA since 1990s. There have been many progress on modeling, imaging, teleoperated or automated control, human-machine interfacing, instrumentation, and applications of AFM based nanorobotic manipulation systems in literature. This book aims to include all of such state-of-the-art progress in an organized, structured, and detailed manner as a reference book and also potentially a textbook in nanorobotics and any other nanoscale dynamics, systems and controls related research and education. Clearly written and well-organized, this text introduces designs and prototypes of the nanorobotic systems in detail with innovative principles of three-dimensional manipulation force microscopy and parallel imaging/manipulation force microscopy.

  10. The possibility of multi-layer nanofabrication via atomic force microscope-based pulse electrochemical nanopatterning

    Science.gov (United States)

    Kim, Uk Su; Morita, Noboru; Lee, Deug Woo; Jun, Martin; Park, Jeong Woo

    2017-05-01

    Pulse electrochemical nanopatterning, a non-contact scanning probe lithography process using ultrashort voltage pulses, is based primarily on an electrochemical machining process using localized electrochemical oxidation between a sharp tool tip and the sample surface. In this study, nanoscale oxide patterns were formed on silicon Si (100) wafer surfaces via electrochemical surface nanopatterning, by supplying external pulsed currents through non-contact atomic force microscopy. Nanoscale oxide width and height were controlled by modulating the applied pulse duration. Additionally, protruding nanoscale oxides were removed completely by simple chemical etching, showing a depressed pattern on the sample substrate surface. Nanoscale two-dimensional oxides, prepared by a localized electrochemical reaction, can be defined easily by controlling physical and electrical variables, before proceeding further to a layer-by-layer nanofabrication process.

  11. Passive microrheology of soft materials with atomic force microscopy: A wavelet-based spectral analysis

    Energy Technology Data Exchange (ETDEWEB)

    Martinez-Torres, C.; Streppa, L. [CNRS, UMR5672, Laboratoire de Physique, Ecole Normale Supérieure de Lyon, 46 Allée d' Italie, Université de Lyon, 69007 Lyon (France); Arneodo, A.; Argoul, F. [CNRS, UMR5672, Laboratoire de Physique, Ecole Normale Supérieure de Lyon, 46 Allée d' Italie, Université de Lyon, 69007 Lyon (France); CNRS, UMR5798, Laboratoire Ondes et Matière d' Aquitaine, Université de Bordeaux, 351 Cours de la Libération, 33405 Talence (France); Argoul, P. [Université Paris-Est, Ecole des Ponts ParisTech, SDOA, MAST, IFSTTAR, 14-20 Bd Newton, Cité Descartes, 77420 Champs sur Marne (France)

    2016-01-18

    Compared to active microrheology where a known force or modulation is periodically imposed to a soft material, passive microrheology relies on the spectral analysis of the spontaneous motion of tracers inherent or external to the material. Passive microrheology studies of soft or living materials with atomic force microscopy (AFM) cantilever tips are rather rare because, in the spectral densities, the rheological response of the materials is hardly distinguishable from other sources of random or periodic perturbations. To circumvent this difficulty, we propose here a wavelet-based decomposition of AFM cantilever tip fluctuations and we show that when applying this multi-scale method to soft polymer layers and to living myoblasts, the structural damping exponents of these soft materials can be retrieved.

  12. The study on the atomic force microscopy base nanoscale electrical discharge machining.

    Science.gov (United States)

    Huang, Jen-Ching; Chen, Chung-Ming

    2012-01-01

    This study proposes an innovative atomic force microscopy (AFM) based nanoscale electrical discharge machining (AFM-based nanoEDM) system which combines an AFM with a self-produced metallic probe and a high-voltage generator to create an atmospheric environment AFM-based nanoEDM system and a deionized water (DI water) environment AFM-based nanoEDM system. This study combines wire-cut processing and electrochemical tip sharpening techniques on a 40-µm thick stainless steel sheet to produce a high conductive AFM probes, the production can withstand high voltage and large current. The tip radius of these probes is approximately 40 nm. A probe test was executed on the AFM using probes to obtain nanoscales morphology of Si wafer surface. The silicon wafer was as a specimen to carry out AFM-base nanoEDM process in atmospheric and DI water environments by AFM-based nanoEDM system. After experiments, the results show that the atmospheric and DI water environment AFM-based nanoEDM systems operate smoothly. From experimental results, it can be found that the electric discharge depth of the silicon wafer at atmospheric environments is a mere 14.54 nm. In a DI water environment, the depth of electric discharge of the silicon wafer can reach 25.4 nm. This indicates that the EDM ability of DI water environment AFM-based nanoEDM system is higher than that of atmospheric environment AFM-based nanoEDM system. After multiple nanoEDM process, the tips become blunt. After applying electrochemical tip sharpening techniques, the tip radius can return to approximately 40 nm. Therefore, AFM probes produced in this study can be reused. © Wiley Periodicals, Inc.

  13. A DNA-Based Encryption Method Based on Two Biological Axioms of DNA Chip and Polymerase Chain Reaction (PCR) Amplification Techniques.

    Science.gov (United States)

    Zhang, Yunpeng; Wang, Zhiwen; Wang, Zhenzhen; Liu, Xin; Yuan, Xiaojing

    2017-09-27

    Researchers have gained a deeper understanding of DNA-based encryption and its effectiveness in enhancing information security in recent years. However, there are many theoretical and technical issues about DNA-based encryption that need to be addressed before it can be effectively used in the field of security. Currently, the most popular DNA-based encryption schemes are based on traditional cryptography and the integration of existing DNA technology. These schemes are not completely based on DNA computing and biotechnology. Herein, as inspired by nature, encryption based on DNA has been developed, which is, in turn, based on two fundamental biological axioms about DNA sequencing: 1) DNA sequencing is difficult under the conditions of not knowing the correct sequencing primers and probes, and 2) without knowing the correct probe, it is difficult to decipher precisely and sequence the information of unknown and mixed DNA/peptide nucleic acid (PNA) probes, which only differ in nucleotide sequence, arranged on DNA chips (microarrays). In essence, when creating DNA-based encryption by means of biological technologies, such as DNA chips and polymerase chain reaction (PCR) amplification, the encryption method discussed herein cannot be decrypted, unless the DNA/PNA probe or PCR amplification is known. The biological analysis, mathematical analysis, and simulation results demonstrate the feasibility of the method, which provides much stronger security and reliability than that of traditional encryption methods. © 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

  14. Ferromagnetism and Half-Metallicity in Atomically Thin Holey Nitrogenated Graphene Based Systems.

    Science.gov (United States)

    Choudhuri, Indrani; Pathak, Biswarup

    2017-09-06

    Metal-free half-metallicity has been the subject of immense research focus in the field of spintronic devices. By using density functional theoretical (DFT) calculations, atomically thin holey nitrogenated graphene (C2 N) based systems are studied for possible spintronic applications. Ferromagnetism is observed in all the C-doped holey nitrogenated graphene. Interestingly, the holey nitrogenated graphene (C2 N) based system shows strong half-metallicity with a Curie temperature of approximately 297 K when a particular C-doping concentration is reached. It shows a strong half-metallicity compared with any metal-free systems studied to date. Thus, such carbon nitride based systems can be used for a 100 % spin polarized current. Furthermore, such C-doped systems show excellent dynamical, thermal, and mechanical properties. Thus, we predict a metal-free planar ferromagnetic half-metallic holey nitrogenated graphene based system for room-temperature spintronic devices. © 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

  15. A chip of fiber optical trap

    Science.gov (United States)

    Su, Heming; Hu, Huizhu; Zhang, Lei; Ge, Xiaojia; Shen, Yu

    2016-10-01

    A chip of fiber optical trap paves the way to realize the miniaturization and portability of devices based on dual beam optical trap, without loss of stability. We have designed two types of chip of fiber optical trap according to our theoretical simulation. The first one integrates dual beam optical trap with microfluidic chip, called a chip of semi-sealing fiber optical trap. It is generally used in chemical, biological, medical and other high-throughput experiments. The second one is a chip of full-sealing fiber optical trap. It is used to measure precisely the coefficient of viscosity or the Brownian movement of micro-object's in liquid. This paper focuses on the chip of fiber optical trap. We present two types of chips of fiber optical trap and detail their designs, fabrication and validation. The chip of semi-sealing fiber optical trap is integrated with optical fiber and microfluidic chip made of polydimethylsiloxane (PDMS). We have achieved the micro-sized alignment of optical paths and the trapping of micro-sized particles in the chip of semi-sealing fiber optical trap. In addition, it is easy to fabrication and clean. The chip of full-sealing fiber optical trap was based on a cubic micro-cavity made by a rectangular capillary tube and sealed by PDMS. We have achieved micro-sized alignment accuracy, high trapping efficiency and better trapping stability in the chip of full-sealing fiber optical trap as well.

  16. Enzymic colorimetry-based DNA chip: a rapid and accurate assay for detecting mutations for clarithromycin resistance in the 23S rRNA gene of Helicobacter pylori.

    Science.gov (United States)

    Xuan, Shi-Hai; Zhou, Yu-Gui; Shao, Bo; Cui, Ya-Lin; Li, Jian; Yin, Hong-Bo; Song, Xiao-Ping; Cong, Hui; Jing, Feng-Xiang; Jin, Qing-Hui; Wang, Hui-Min; Zhou, Jie

    2009-11-01

    Macrolide drugs, such as clarithromycin (CAM), are a key component of many combination therapies used to eradicate Helicobacter pylori. However, resistance to CAM is increasing in H. pylori and is becoming a serious problem in H. pylori eradication therapy. CAM resistance in H. pylori is mostly due to point mutations (A2142G/C, A2143G) in the peptidyltransferase-encoding region of the 23S rRNA gene. In this study an enzymic colorimetry-based DNA chip was developed to analyse single-nucleotide polymorphisms of the 23S rRNA gene to determine the prevalence of mutations in CAM-related resistance in H. pylori-positive patients. The results of the colorimetric DNA chip were confirmed by direct DNA sequencing. In 63 samples, the incidence of the A2143G mutation was 17.46 % (11/63). The results of the colorimetric DNA chip were concordant with DNA sequencing in 96.83 % of results (61/63). The colorimetric DNA chip could detect wild-type and mutant signals at every site, even at a DNA concentration of 1.53 x 10(2) copies microl(-1). Thus, the colorimetric DNA chip is a reliable assay for rapid and accurate detection of mutations in the 23S rRNA gene of H. pylori that lead to CAM-related resistance, directly from gastric tissues.

  17. Crystal engineering of giant molecules based on perylene diimide conjugated polyhedral oligomeric silsesquioxane nano-atom

    Science.gov (United States)

    Ren, He

    . In such "bottom-up" approach, the precise fabrication of 2 nm 100 nm nanostructures, is of great research interest. In this thesis, crystal engineering of giant molecules based on PDI conjugated POSS Nano-Atom (PDI-BPOSS) nano-atoms via self-assembly is performed and studied. Herein, three different giant molecules were synthesized: shape amphiphile, m-phenyl-(PDI-BPOSS)2 (S1) and tetrahedron, R-(PDI-BPOSS)4 (S2) and S-(PDI-BPOSS)4 (S3). Single crystals were grown for S1 and S2, X-ray diffraction (XRD), Scanning Electron Microscopy (SEM) and transmission electron microscopy (TEM) were performed, and crystal structures of these samples were determined, while hexagonal superlattice without crystal order can be observed for S3 to exhibit crystal-like morphology.

  18. Combining SDM-Based Circuit Switching with Packet Switching in a Router for On-Chip Networks

    Directory of Open Access Journals (Sweden)

    Angelo Kuti Lusala

    2012-01-01

    Full Text Available A Hybrid router architecture for Networks-on-Chip “NoC” is presented, it combines Spatial Division Multiplexing “SDM” based circuit switching and packet switching in order to efficiently and separately handle both streaming and best-effort traffic generated in real-time applications. Furthermore the SDM technique is combined with Time Division Multiplexing “TDM” technique in the circuit switching part in order to increase path diversity, thus improving throughput while sharing communication resources among multiple connections. Combining these two techniques allows mitigating the poor resource usage inherent to circuit switching. In this way Quality of Service “QoS” is easily provided for the streaming traffic through the circuit-switched sub-router while the packet-switched sub-router handles best-effort traffic. The proposed hybrid router architectures were synthesized, placed and routed on an FPGA. Results show that a practicable Network-on-Chip “NoC” can be built using the proposed router architectures. 7 × 7 mesh NoCs were simulated in SystemC. Simulation results show that the probability of establishing paths through the NoC increases with the number of sub-channels and has its highest value when combining SDM with TDM, thereby significantly reducing contention in the NoC.

  19. A lab-on-chip cell-based biosensor for label-free sensing of water toxicants.

    Science.gov (United States)

    Liu, F; Nordin, A N; Li, F; Voiculescu, I

    2014-04-07

    This paper presents a lab-on-chip biosensor containing an enclosed fluidic cell culturing well seeded with live cells for rapid screening of toxicants in drinking water. The sensor is based on the innovative placement of the working electrode for the electrical cell-substrate impedance sensing (ECIS) technique as the top electrode of a quartz crystal microbalance (QCM) resonator. Cell damage induced by toxic water will cause a decrease in impedance, as well as an increase in the resonant frequency. For water toxicity tests, the biosensor's unique capabilities of performing two complementary measurements simultaneously (impedance and mass-sensing) will increase the accuracy of detection while decreasing the false-positive rate. Bovine aortic endothelial cells (BAECs) were used as toxicity sensing cells. The effects of the toxicants, ammonia, nicotine and aldicarb, on cells were monitored with both the QCM and the ECIS technique. The lab-on-chip was demonstrated to be sensitive to low concentrations of toxicants. The responses of BAECs to toxic samples occurred during the initial 5 to 20 minutes depending on the type of chemical and concentrations. Testing the multiparameter biosensor with aldicarb also demonstrated the hypothesis that using two different sensors to monitor the same cell monolayer provides cross validation and increases the accuracy of detection. For low concentrations of aldicarb, the variations in impedance measurements are insignificant in comparison with the shifts of resonant frequency monitored using the QCM resonator. A highly linear correlation between signal shifts and chemical concentrations was demonstrated for each toxicant.

  20. A Lab-on-a-Chip-Based Non-Invasive Optical Sensor for Measuring Glucose in Saliva

    Directory of Open Access Journals (Sweden)

    Dong Geon Jung

    2017-11-01

    Full Text Available A lab-on-a-chip (LOC-based non-invasive optical sensor for measuring glucose in saliva was fabricated. Existing glucose sensors utilizing blood require acquisition of a blood sample by pricking the finger, which is painful and inconvenient. To overcome these limitations, we propose a non-invasive glucose sensor with LOC, micro-electro-mechanical system and optical measurement technology. The proposed sensor for measuring glucose in saliva involves pretreatment, mixing, and measurement on a single tiny chip. Saliva containing glucose and glucose oxidase for glucose oxidation are injected through Inlets 1 and 2, respectively. Next, H2O2 is produced by the reaction between glucose and glucose oxidase in the pretreatment part. The saliva and generated H2O2 are mixed with a colorizing agent injected through Inlet 3 during the mixing part and the absorbance of the colorized mixture is measured in the measurement part. The absorbance of light increases as a function of glucose concentration at a wavelength of 630 nm. To measure the absorbance of the colorized saliva, a light-emitting diode with a wavelength of 630 nm and a photodiode were used during the measurement part. As a result, the measured output current of the photodiode decreased as glucose concentration in the saliva increased.

  1. An integrated lab-on-a-chip-based electrochemical biosensor for rapid and sensitive detection of cancer biomarkers.

    Science.gov (United States)

    Uludag, Yildiz; Narter, Fehmi; Sağlam, Erkin; Köktürk, Güzin; Gök, M Yağmur; Akgün, Mete; Barut, Serkan; Budak, Sinan

    2016-11-01

    Recent advances in the area of biosensor technology and microfluidic applications have enabled the miniaturisation of the sensing platforms. Here we describe a new integrated and fully automated lab-on-a-chip-based biosensor device prototype (MiSens) that has potential to be used for point-of-care cancer biomarker testing. The key features of the device include a new biochip, a device integrated microfluidic system and real-time amperometric measurements during the flow of enzyme substrate. For ease of use, a new plug and play type sensor chip docking station has been designed. This system allows the formation of an ∼7 μL capacity flow cell on the electrode array with the necessary microfluidic and electronic connections with one move of a handle. As a case study, the developed prototype has been utilised for the detection of prostate-specific antigen (PSA) level in serum that is routinely used as a biomarker for the diagnosis of prostate cancer. The patient samples from a nearby hospital have been collected and tested using the MiSens device, and the results have been compared to the hospital results. The obtained results indicate the potential of the MiSens device as a useful tool for point-of-care testing. Graphical abstract Microfluidics integrated and automated electrochemical biosensor device "MiSens" has been designed and fabricated by a multidisciplinary team and utilised to detect PSA from clinical samples.

  2. Fabrication of a Highly-sensitive Acetylcholine Sensor Based on AChOx Immobilized Smart-chips

    Directory of Open Access Journals (Sweden)

    M. M. RAHMAN

    2011-03-01

    Full Text Available Acetylcholine (ACh sensor based on acetylcholine oxidase (AChOx on EDC activated thioglycolic acid self-assembled monolayer (TGA-SAM using smart-chip has been developed. The simple cyclic voltammetry (CV, at 0.1 V/s technique is performed in total investigation, where 0.5M K3Fe(CN6 is utilized as a standard mediator in phosphate buffer solution (PBS, 0.1M. The ACh sensor exhibited a lower detection limit (DL, 0.1392 ± 0.005 nM, a wide linear dynamic range (LDR, 1.0 nM to 1.0 mM, good linearity (R=0.9951, and higher sensitivity (7.3543 ± 0.2 μAμM-1cm-2, and required small sample volume (70.0 μL as well as good stability and reproducibility. The smart-chip system employed a simple and efficient approach to the immobilization of enzymes onto active sensitive surface, which can enhance sensor performances to a large group of bio-molecules for wide range of biomedical applications in health care fields.

  3. Poly(dimethylsiloxane) microchip-based immunoassay with multiple reaction zones: Toward on-chip multiplex detection platform

    Energy Technology Data Exchange (ETDEWEB)

    Shao, Guocheng; Wang, Jun; Li, Zhaohui; Saraf, Laxmikant V.; Wang, Wanjun; Lin, Yuehe

    2011-09-20

    In this work, a poly(dimethylsiloxane) (PDMS) microchip-based immuno-sensing platform with integrated pneumatic micro valves is described. The microchip was fabricated with multiple layer soft lithography technology. By controlling the activation status of corresponding valves, reagent flows in the microchannel network can be well manipulated so that immuno-reactions only take place at designated reaction zones (DRZs). Four DRZs are included in the prototype microchip. Since these DRZs are all isolated from each other by micro valves, cross contamination is prevented. Using the inner surface of the all-PDMS microchannel as immunoassay substrate, on-chip sandwich format solid phase immunoassay was performed to demonstrate the feasibility of this immuno-sensing platform. Mouse IgG and fluorescein isothiocyanate (FITC) were used as the model analyte and the signal reporter respectively. Only 10 ul sample is needed for the assay and low detection limit of 5 ng/ml (≈33 pM) was achieved though low-cost polyclonal antibodies were used in our experiment for feasibility study only. The encouraging results from mouse IgG immunoassay proved the feasibility of our microchip design. With slight modification of the assay protocol, the same chip design can be used for multi-target detection and can provide a simple, cost-effective and integrated microchip solution for multiplex immunoassay applications.

  4. Building a multi-FPGA-based emulation framework to support networks-on-chip design and verification

    Science.gov (United States)

    Liu, Yangfan; Liu, Peng; Jiang, Yingtao; Yang, Mei; Wu, Kejun; Wang, Weidong; Yao, Qingdong

    2010-10-01

    In this article, we present a highly scalable, flexible hardware-based network-on-chip (NoC) emulation framework, through which NoCs built upon various types of network topologies, routing algorithms, switching protocols and flow control schemes can be explored, compared, and validated with injected or self-generated traffic from both real-life and synthetic applications. This high degree of scalability and flexibility is achieved due to the field programmable gate array (FPGA) design choices made at both functional and physical levels. At the functional level, a NoC system to be emulated can be partitioned into two parts: (i) the processing cores and (ii) the network. Each part is mapped onto a different FPGA so that when there is any change to be made to any one of these parts, only the corresponding FPGA needs to be reconfigured and the rest of the FPGAs will be left untouched. At the physical level, two levels of interconnects are adopted to mimic NoC on-chip communications: high bandwidth and low latency parallel on-board wires, and high-speed serial multigigabit transceivers available in FPGAs. The latter is particularly important as it helps the proposed NoC emulation platform scale well with the size increase of the NoCs.

  5. A Lab-on-a-Chip-Based Non-Invasive Optical Sensor for Measuring Glucose in Saliva.

    Science.gov (United States)

    Jung, Dong Geon; Jung, Daewoong; Kong, Seong Ho

    2017-11-13

    A lab-on-a-chip (LOC)-based non-invasive optical sensor for measuring glucose in saliva was fabricated. Existing glucose sensors utilizing blood require acquisition of a blood sample by pricking the finger, which is painful and inconvenient. To overcome these limitations, we propose a non-invasive glucose sensor with LOC, micro-electro-mechanical system and optical measurement technology. The proposed sensor for measuring glucose in saliva involves pretreatment, mixing, and measurement on a single tiny chip. Saliva containing glucose and glucose oxidase for glucose oxidation are injected through Inlets 1 and 2, respectively. Next, H₂O₂ is produced by the reaction between glucose and glucose oxidase in the pretreatment part. The saliva and generated H₂O₂ are mixed with a colorizing agent injected through Inlet 3 during the mixing part and the absorbance of the colorized mixture is measured in the measurement part. The absorbance of light increases as a function of glucose concentration at a wavelength of 630 nm. To measure the absorbance of the colorized saliva, a light-emitting diode with a wavelength of 630 nm and a photodiode were used during the measurement part. As a result, the measured output current of the photodiode decreased as glucose concentration in the saliva increased.

  6. Bayesian-based aberration correction and numerical diffraction for improved lensfree on-chip microscopy of biological specimens

    Science.gov (United States)

    Wong, Alexander; Kazemzadeh, Farnoud; Jin, Chao; Wang, Xiao Yu

    2015-05-01

    Lensfree on-chip microscopy is an emerging imaging technique that can be used to visualize and study biological specimens without the need for imaging lens systems. Important issues that can limit the performance of lensfree on-chip microscopy include interferometric aberrations, acquisition noise, and image reconstruction artifacts. In this study, we introduce a Bayesian-based method for performing aberration correction and numerical diffraction that accounts for all three of these issues to improve the effective numerical aperture (NA) and signal-to-noise ratio (SNR) of the reconstructed microscopic image. The proposed method was experimentally validated using the USAF resolution target as well as real waterborne Anabaena flos-aquae samples, demonstrating improvements in NA by ~25% over the standard method, and improvements in SNR of 2.3 dB and 3.8 dB in the reconstructed image when compared to the reconstructed images produced using the standard method and a maximum likelihood estimation method, respectively.

  7. Liquid carry-over in an injection moulded all-polymer chip system for immiscible phase magnetic bead-based solid-phase extraction

    DEFF Research Database (Denmark)

    Kistrup, Kasper; Sørensen, Karen Skotte; Wolff, Anders

    2014-01-01

    We present an all-polymer, single-use microfluidic chip system produced by injection moulding and bonded by ultrasonic welding. Both techniques are compatible with low-cost industrial mass-production. The chip is produced for magnetic bead-based solid-phase extraction facilitated by immiscible...... phase filtration and features passive liquid filling and magnetic bead manipulation using an external magnet. In this work, we determine the system compatibility with various surfactants. Moreover, we quantify the volume of liquid co-transported with magnetic bead clusters from Milli-Q water or a lysis...

  8. The influence of physical and physiological cues on atomic force microscopy-based cell stiffness assessment.

    Directory of Open Access Journals (Sweden)

    Yu-Wei Chiou

    Full Text Available Atomic force microscopy provides a novel technique for differentiating the mechanical properties of various cell types. Cell elasticity is abundantly used to represent the structural strength of cells in different conditions. In this study, we are interested in whether physical or physiological cues affect cell elasticity in Atomic force microscopy (AFM-based assessments. The physical cues include the geometry of the AFM tips, the indenting force and the operating temperature of the AFM. All of these cues show a significant influence on the cell elasticity assessment. Sharp AFM tips create a two-fold increase in the value of the effective Young's modulus (E(eff relative to that of the blunt tips. Higher indenting force at the same loading rate generates higher estimated cell elasticity. Increasing the operation temperature of the AFM leads to decreases in the cell stiffness because the structure of actin filaments becomes disorganized. The physiological cues include the presence of fetal bovine serum or extracellular matrix-coated surfaces, the culture passage number, and the culture density. Both fetal bovine serum and the extracellular matrix are critical for cells to maintain the integrity of actin filaments and consequently exhibit higher elasticity. Unlike primary cells, mouse kidney progenitor cells can be passaged and maintain their morphology and elasticity for a very long period without a senescence phenotype. Finally, cell elasticity increases with increasing culture density only in MDCK epithelial cells. In summary, for researchers who use AFM to assess cell elasticity, our results provide basic and significant information about the suitable selection of physical and physiological cues.

  9. Magnetoencephalography with a Cs-based high-sensitivity compact atomic magnetometer

    Science.gov (United States)

    Sheng, Jingwei; Wan, Shuangai; Sun, Yifan; Dou, Rongshe; Guo, Yuhao; Wei, Kequan; He, Kaiyan; Qin, Jie; Gao, Jia-Hong

    2017-09-01

    In recent years, substantial progress has been made in developing a new generation of magnetoencephalography (MEG) with a spin-exchange relaxation free (SERF)-based atomic magnetometer (AM). An AM employs alkali atoms to detect weak magnetic fields. A compact AM array with high sensitivity is crucial to the design; however, most proposed compact AMs are potassium (K)- or rubidium (Rb)-based with single beam configurations. In the present study, a pump-probe two beam configuration with a Cesium (Cs)-based AM (Cs-AM) is introduced to detect human neuronal magnetic fields. The length of the vapor cell is 4 mm, which can fully satisfy the need of designing a compact sensor array. Compared with state-of-the-art compact AMs, our new Cs-AM has two advantages. First, it can be operated in a SERF regime, requiring much lower heating temperature, which benefits the sensor with a closer distance to scalp due to ease of thermal insulation and less electric heating noise interference. Second, the two-beam configuration in the design can achieve higher sensitivity. It is free of magnetic modulation, which is necessary in one-beam AMs; however, such modulation may cause other interference in multi-channel circumstances. In the frequency band between 10 Hz and 30 Hz, the noise level of the proposed Cs-AM is approximately 10 f T/Hz1/2, which is comparable with state-of-the-art K- or Rb-based compact AMs. The performance of the Cs-AM was verified by measuring human auditory evoked fields (AEFs) in reference to commercial superconducting quantum interference device (SQUID) channels. By using a Cs-AM, we observed a clear peak in AEFs around 100 ms (M100) with a much larger amplitude compared with that of a SQUID, and the temporal profiles of the two devices were in good agreement. The results indicate the possibility of using the compact Cs-AM for MEG recordings, and the current Cs-AM has the potential to be designed for multi-sensor arrays and gradiometers for future neuroscience

  10. A miniature electronic nose system based on an MWNT-polymer microsensor array and a low-power signal-processing chip.

    Science.gov (United States)

    Chiu, Shih-Wen; Wu, Hsiang-Chiu; Chou, Ting-I; Chen, Hsin; Tang, Kea-Tiong

    2014-06-01

    This article introduces a power-efficient, miniature electronic nose (e-nose) system. The e-nose system primarily comprises two self-developed chips, a multiple-walled carbon nanotube (MWNT)-polymer based microsensor array, and a low-power signal-processing chip. The microsensor array was fabricated on a silicon wafer by using standard photolithography technology. The microsensor array comprised eight interdigitated electrodes surrounded by SU-8 "walls," which restrained the material-solvent liquid in a defined area of 650 × 760 μm(2). To achieve a reliable sensor-manufacturing process, we used a two-layer deposition method, coating the MWNTs and polymer film as the first and second layers, respectively. The low-power signal-processing chip included array data acquisition circuits and a signal-processing core. The MWNT-polymer microsensor array can directly connect with array data acquisition circuits, which comprise sensor interface circuitry and an analog-to-digital converter; the signal-processing core consists of memory and a microprocessor. The core executes the program, classifying the odor data received from the array data acquisition circuits. The low-power signal-processing chip was designed and fabricated using the Taiwan Semiconductor Manufacturing Company 0.18-μm 1P6M standard complementary metal oxide semiconductor process. The chip consumes only 1.05 mW of power at supply voltages of 1 and 1.8 V for the array data acquisition circuits and the signal-processing core, respectively. The miniature e-nose system, which used a microsensor array, a low-power signal-processing chip, and an embedded k-nearest-neighbor-based pattern recognition algorithm, was developed as a prototype that successfully recognized the complex odors of tincture, sorghum wine, sake, whisky, and vodka.

  11. Compact Shorted Stacked-Patch Antenna Integrated with Chip-Package Based on LTCC Technology

    OpenAIRE

    Li, Yongjiu; Li, Long; Dai, Xiwang; Zhu, Cheng; Huo, Feifei; Dong, Gang

    2014-01-01

    A low profile chip-package stacked-patch antenna is proposed by using low temperature cofired ceramic (LTCC) technology. The proposed antenna employs a stacked-patch to achieve two operating frequency bands and enhance the bandwidth. The height of the antenna is decreased to 4.09 mm (about λ/25 at 2.45 GHz) due to the shorted pin. The package is mounted on a 44 × 44 mm2 ground plane to miniaturize the volume of the system. The design parameters of the antenna and the effect of the antenna on ...

  12. A new intelligent curtain control system based on 51 single chip microcomputer

    Science.gov (United States)

    Sun, Tuan; Wang, Yanhua; Wu, Mengmeng

    2017-04-01

    This paper uses 51 (single chip microcomputer) SCM as the operation and data processing center. According to the change of sunshine intensity and ambient temperature, a new type of intelligent curtain control system is designed by adopting photosensitive element and temperature sensor. In addition, the design also has a manual control mode. In the rain, when the light intensity is weak, the open position of the curtain can be set by the user. The system can maximize the user to provide user-friendly operation and comfortable living environment. The system can be applied to home or office environment, with a wide range of applications and simple operation and so on.

  13. Ultra-Low Loss, Chip-Based Hollow-Core Waveguide Using High-Contrast Grating

    Science.gov (United States)

    2011-09-28

    delay circuit can be realized with a device loss that is order of magnitude lower than the current state- of-the-art in on-chip semiconductor...demonstrated as a high reflection mirrors at normal incident angle for VCSELs [5-7]. An HCG structure consists of a single layer of grating composed of a...nonlinearity measurement is currently limited by maximum power level of our EDF A ( ~ 18 dBm), the noise floor of OSA and the insufficient length of the

  14. Erosion of Carbon-based spacecraft structures in LEO by Atomic Oxygen

    DEFF Research Database (Denmark)

    Jørgensen, John Leif

    1998-01-01

    Atomic oxygen is constantly generated on the topside of the atmosphere by ionizing radiation. The ionizing solar radiation, UV and particles, will on impact dissociate molecular oxygen to atomic oxygen. However, due to the ratio between the UV and the particle flux from the sun, and due to compar...

  15. A critical comparison of coarse-grained structure-based approaches and atomic models of protein folding.

    Science.gov (United States)

    Hu, Jie; Chen, Tao; Wang, Moye; Chan, Hue Sun; Zhang, Zhuqing

    2017-05-31

    Structure-based coarse-grained Gō-like models have been used extensively in deciphering protein folding mechanisms because of their simplicity and tractability. Meanwhile, explicit-solvent molecular dynamics (MD) simulations with physics-based all-atom force fields have been applied successfully to simulate folding/unfolding transitions for several small, fast-folding proteins. To explore the degree to which coarse-grained Gō-like models and their extensions to incorporate nonnative interactions are capable of producing folding processes similar to those in all-atom MD simulations, here we systematically compare the computed unfolded states, transition states, and transition paths obtained using coarse-grained models and all-atom explicit-solvent MD simulations. The conformations in the unfolded state in common Gō models are more extended, and are thus more in line with experiment, than those from all-atom MD simulations. Nevertheless, the structural features of transition states obtained by the two types of models are largely similar. In contrast, the folding transition paths are significantly more sensitive to modeling details. In particular, when common Gō-like models are augmented with nonnative interactions, the predicted dimensions of the unfolded conformations become similar to those computed using all-atom MD. With this connection, the large deviations of all-atom MD from simple diffusion theory are likely caused in part by the presence of significant nonnative effects in folding processes modelled by current atomic force fields. The ramifications of our findings to the application of coarse-grained modeling to more complex biomolecular systems are discussed.

  16. StatSTEM: An efficient program for accurate and precise model-based quantification of atomic resolution electron microscopy images

    Science.gov (United States)

    De Backer, A.; van den Bos, K. H. W.; Van den Broek, W.; Sijbers, J.; Van Aert, S.

    2017-09-01

    An efficient model-based estimation algorithm is introduced in order to quantify the atomic column positions and intensities from atomic resolution (scanning) transmission electron microscopy ((S)TEM) images. This algorithm uses the least squares estimator on image segments containing individual columns fully accounting for the overlap between neighbouring columns, enabling the analysis of a large field of view. For this algorithm, the accuracy and precision with which measurements for the atomic column positions and scattering cross-sections from annular dark field (ADF) STEM images can be estimated, is investigated. The highest attainable precision is reached even for low dose images. Furthermore, advantages of the model-based approach taking into account overlap between neighbouring columns are highlighted. To provide end-users this well-established quantification method, a user friendly program, StatSTEM, is developed which is freely available under a GNU public license.

  17. Study on Droplet Size and Velocity Distributions of a Pressure Swirl Atomizer Based on the Maximum Entropy Formalism

    Directory of Open Access Journals (Sweden)

    Kai Yan

    2015-01-01

    Full Text Available A predictive model for droplet size and velocity distributions of a pressure swirl atomizer has been proposed based on the maximum entropy formalism (MEF. The constraint conditions of the MEF model include the conservation laws of mass, momentum, and energy. The effects of liquid swirling strength, Weber number, gas-to-liquid axial velocity ratio and gas-to-liquid density ratio on the droplet size and velocity distributions of a pressure swirl atomizer are investigated. Results show that model based on maximum entropy formalism works well to predict droplet size and velocity distributions under different spray conditions. Liquid swirling strength, Weber number, gas-to-liquid axial velocity ratio and gas-to-liquid density ratio have different effects on droplet size and velocity distributions of a pressure swirl atomizer.

  18. Evaluating the morphology of erythrocyte population: An approach based on atomic force microscopy and flow cytometry.

    Science.gov (United States)

    Ghosh, Sayari; Chakraborty, Ishita; Chakraborty, Monojit; Mukhopadhyay, Ashis; Mishra, Raghwendra; Sarkar, Debasish

    2016-04-01

    Erythrocyte morphology is gaining importance as a powerful pathological index in identifying the severity of any blood related disease. However, the existing technique of quantitative microscopy is highly time consuming and prone to personalized bias. On the other hand, relatively unexplored, complementary technique based on flow cytometry has not been standardized till date, particularly due to the lack of a proper morphological scoring scale. In this article, we have presented a new approach to formulate a non-empirical scoring scale based on membrane roughness (R(rms)) data obtained from atomic force microscopy. Subsequently, the respective morphological quantifier of the whole erythrocyte population, commonly known as morphological index, was expressed as a function of highest correlated statistical parameters of scattered signal profiles generated by flow cytometry. Feed forward artificial neural network model with multilayer perceptron architecture was used to develop the intended functional form. High correlation coefficient (R(2) = 0.95), even for model-formulation exclusive samples, clearly indicates the universal validity of the proposed model. Moreover, a direct pathological application of the proposed model has been illustrated in relation to patients, diagnosed to be suffering from a wide variety of cancer. Copyright © 2016 Elsevier B.V. All rights reserved

  19. Atomically dispersed metal sites in MOF-based materials for electrocatalytic and photocatalytic energy conversion.

    Science.gov (United States)

    Liang, Zibin; Qu, Chong; Xia, Dingguo; Zou, Ruqiang; Xu, Qiang

    2018-02-19

    Metal sites play an essential role for both electrocatalytic and photocatalytic energy conversion applications. The highly ordered arrangements of the organic linkers and metal nodes and the well-defined pore structures of metal-organic frameworks (MOFs) make them ideal substrates to support atomically dispersed metal sites (ADMSs) located in their metal nodes, linkers, and pores. Besides, porous carbon materials doped with ADMSs can be derived from these ADMS-incorporated MOF precursors through controlled treatments. These ADMSs incorporated in pristine MOFs and MOF-derived carbon materials possess unique merits over the molecular or the bulk metal-based catalysts, bridging the gap between homogeneous and heterogeneous catalysts for energy conversion applications. In this review, recent progress and perspective of design and incorporation of ADMSs in pristine MOFs and MOF-derived materials for energy conversion applications are highlighted, which will hopefully promote further developments of advanced MOF-based catalysts in foreseeable future. © 2018 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  20. [Determination of soil exchangeable base cations by using atomic absorption spectrophotometer and extraction with ammonium acetate].

    Science.gov (United States)

    Zhang, Yu-ge; Xiao, Min; Dong, Yi-hua; Jiang, Yong

    2012-08-01

    A method to determine soil exchangeable calcium (Ca), magnesium (Mg), potassium (K), and sodium (Na) by using atomic absorption spectrophotometer (AAS) and extraction with ammonium acetate was developed. Results showed that the accuracy of exchangeable base cation data with AAS method fits well with the national standard referential soil data. The relative errors for parallel samples of exchangeable Ca and Mg with 66 pair samples ranged from 0.02%-3.14% and 0.06%-4.06%, and averaged to be 1.22% and 1.25%, respectively. The relative errors for exchangeable K and Na with AAS and flame photometer (FP) ranged from 0.06%-8.39% and 0.06-1.54, and averaged to be 3.72% and 0.56%, respectively. A case study showed that the determination method for exchangeable base cations by using AAS was proven to be reliable and trustable, which could reflect the real situation of soil cation exchange properties in farmlands.

  1. An Impedance-Based Mold Sensor with on-Chip Optical Reference

    Directory of Open Access Journals (Sweden)

    Poornachandra Papireddy Vinayaka

    2016-09-01

    Full Text Available A new miniaturized sensor system with an internal optical reference for the detection of mold growth is presented. The sensor chip comprises a reaction chamber provided with a culture medium that promotes the growth of mold species from mold spores. The mold detection is performed by measuring impedance changes with integrated electrodes fabricated inside the reaction chamber. The impedance change in the culture medium is caused by shifts in the pH (i.e., from 5.5 to 8 as the mold grows. In order to determine the absolute pH value without the need for calibration, a methyl red indicator dye has been added to the culture medium. It changes the color of the medium as the pH passes specific values. This colorimetric principle now acts as a reference measurement. It also allows the sensitivity of the impedance sensor to be established in terms of impedance change per pH unit. Major mold species that are involved in the contamination of food, paper and indoor environments, like Fusarium oxysporum, Fusarium incarnatum, Eurotium amstelodami, Aspergillus penicillioides and Aspergillus restrictus, have been successfully analyzed on-chip.

  2. Integration of microcoils for on-chip immunosensors based on magnetic nanoparticles capture

    Directory of Open Access Journals (Sweden)

    Olivier Lefebvre

    2017-04-01

    Full Text Available Immunoassays using magnetic nanoparticles (MNP are generally performed under the control of permanent magnet close to the micro-tube of reaction. Using a magnet gives a powerful method for driving MNP but remains unreliable or insufficient for a fully integrated immunoassay on lab-on-chip. The aim of this study is to develop a novel lab-on-chip concept for high efficient immunoassays to detect ovalbumin (Biodefense model molecule with microcoils employed for trapping MNP during the biofunctionalization steps. The objectives are essentially to optimize their efficiency for biological recognition by assuring a better bioactivity (antibodies-ovalbumin, and detect small concentrations of the targeted protein (~10 pg/mL. In this work, we studied the response of immunoassays complex function of ovalbumin concentration. The impact of MNP diameter in the biografting protocol was studied and permitted to choose a convenient MNP size for efficient biorecognition. We realized different immunoassays by controlling MNP in test tube and in microfluidic device using a permanent magnet. The comparison between these two experiments allows us to highlight an improvement of the limit of detection in microfluidic conditions by controlling MNP trapping with a magnet.

  3. Detection of Bax protein conformational change using a surface plasmon resonance imaging-based antibody chip.

    Science.gov (United States)

    Kim, Moonil; Jung, Sun Ok; Park, Kyoungsook; Jeong, Eun-Ju; Joung, Hyou-Arm; Kim, Tae-Hyoung; Seol, Dai-Wu; Chung, Bong Hyun

    2005-12-30

    We describe an antibody chip technology that uses a surface plasmon resonance (SPR) imaging system to examine the conformational change of a protein. In this study, we used Bax protein, a pro-apoptotic member of the Bcl-2 family of proteins, as a model protein to investigate the conformational alteration triggered by a TNF-related apoptosis-inducing ligand (TRAIL), a potent inducer of apoptosis. To develop the antibody chip for detecting the Bax conformational change, we immobilized Bax monoclonal antibody 6A7, which recognizes only a conformationally changed Bax protein on a gold surface. The resultant immobilized Bax antibodies provided specific and accurate measurements of the active conformation-specific epitope in the apoptotic cancer cells treated with the TRAIL; these measurements corresponded to the data obtained by immunoprecipitation analysis using an active conformation-specific Bax antibody (6A7). The results of our study indicated that TRAIL-induced Bax structural change could be monitored quickly and simply using an SPR imaging system, thus demonstrating the potential for using such a system for the analysis of conformational properties of target proteins.

  4. An Impedance-Based Mold Sensor with on-Chip Optical Reference

    Science.gov (United States)

    Papireddy Vinayaka, Poornachandra; van den Driesche, Sander; Blank, Roland; Tahir, Muhammad Waseem; Frodl, Mathias; Lang, Walter; Vellekoop, Michael J.

    2016-01-01

    A new miniaturized sensor system with an internal optical reference for the detection of mold growth is presented. The sensor chip comprises a reaction chamber provided with a culture medium that promotes the growth of mold species from mold spores. The mold detection is performed by measuring impedance changes with integrated electrodes fabricated inside the reaction chamber. The impedance change in the culture medium is caused by shifts in the pH (i.e., from 5.5 to 8) as the mold grows. In order to determine the absolute pH value without the need for calibration, a methyl red indicator dye has been added to the culture medium. It changes the color of the medium as the pH passes specific values. This colorimetric principle now acts as a reference measurement. It also allows the sensitivity of the impedance sensor to be established in terms of impedance change per pH unit. Major mold species that are involved in the contamination of food, paper and indoor environments, like Fusarium oxysporum, Fusarium incarnatum, Eurotium amstelodami, Aspergillus penicillioides and Aspergillus restrictus, have been successfully analyzed on-chip. PMID:27690039

  5. Going Vertical To Improve the Accuracy of Atomic Force Microscopy Based Single-Molecule Force Spectroscopy.

    Science.gov (United States)

    Walder, Robert; Van Patten, William J; Adhikari, Ayush; Perkins, Thomas T

    2018-01-23

    Single-molecule force spectroscopy (SMFS) is a powerful technique to characterize the energy landscape of individual proteins, the mechanical properties of nucleic acids, and the strength of receptor-ligand interactions. Atomic force microscopy (AFM)-based SMFS benefits from ongoing progress in improving the precision and stability of cantilevers and the AFM itself. Underappreciated is that the accuracy of such AFM studies remains hindered by inadvertently stretching molecules at an angle while measuring only the vertical component of the force and extension, degrading both measurements. This inaccuracy is particularly problematic in AFM studies using double-stranded DNA and RNA due to their large persistence length (p ≈ 50 nm), often limiting such studies to other SMFS platforms (e.g., custom-built optical and magnetic tweezers). Here, we developed an automated algorithm that aligns the AFM tip above the DNA's attachment point to a coverslip. Importantly, this algorithm was performed at low force (10-20 pN) and relatively fast (15-25 s), preserving the connection between the tip and the target molecule. Our data revealed large uncorrected lateral offsets for 100 and 650 nm DNA molecules [24 ± 18 nm (mean ± standard deviation) and 180 ± 110 nm, respectively]. Correcting this offset yielded a 3-fold improvement in accuracy and precision when characterizing DNA's overstretching transition. We also demonstrated high throughput by acquiring 88 geometrically corrected force-extension curves of a single individual 100 nm DNA molecule in ∼40 min and versatility by aligning polyprotein- and PEG-based protein-ligand assays. Importantly, our software-based algorithm was implemented on a commercial AFM, so it can be broadly adopted. More generally, this work illustrates how to enhance AFM-based SMFS by developing more sophisticated data-acquisition protocols.

  6. Facile encapsulation of oxide based thin film transistors by atomic layer deposition based on ozone.

    Science.gov (United States)

    Fakhri, Morteza; Babin, Nikolai; Behrendt, Andreas; Jakob, Timo; Görrn, Patrick; Riedl, Thomas

    2013-05-28

    A simplified encapsulation strategy for metal-oxide based TFTs, using ozone instead of water as an oxygen source in a low-temperature ALD process is demonstrated. Thereby, the threshold voltage remains unaltered and the hysteresis is permanently reduced. Costly energy- and time-consuming post-treatment processes can be avoided. This concept is widely applicable to various encapsulation materials (e.g., Al2 O3 , TiO2 , ZrO2 ) and metal-oxide channel semiconductors (e.g., zinc-tin-oxide (ZTO), indium-gallium-zinc-oxide (IGZO)). Copyright © 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  7. Microfabricated Waveguide Atom Traps.

    Energy Technology Data Exchange (ETDEWEB)

    Jau, Yuan-Yu [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States)

    2017-09-01

    A nanoscale , microfabricated waveguide structure can in - principle be used to trap atoms in well - defined locations and enable strong photon-atom interactions . A neutral - atom platform based on this microfabrication technology will be prealigned , which is especially important for quantum - control applications. At present, there is still no reported demonstration of evanescent - field atom trapping using a microfabricated waveguide structure. We described the capabilities established by our team for future development of the waveguide atom - trapping technology at SNL and report our studies to overcome the technical challenges of loading cold atoms into the waveguide atom traps, efficient and broadband optical coupling to a waveguide, and the waveguide material for high - power optical transmission. From the atomic - physics and the waveguide modeling, w e have shown that a square nano-waveguide can be utilized t o achieve better atomic spin squeezing than using a nanofiber for first time.

  8. Atomic and molecular manipulation

    CERN Document Server

    Mayne, Andrew J

    2011-01-01

    Work with individual atoms and molecules aims to demonstrate that miniaturized electronic, optical, magnetic, and mechanical devices can operate ultimately even at the level of a single atom or molecule. As such, atomic and molecular manipulation has played an emblematic role in the development of the field of nanoscience. New methods based on the use of the scanning tunnelling microscope (STM) have been developed to characterize and manipulate all the degrees of freedom of individual atoms and molecules with an unprecedented precision. In the meantime, new concepts have emerged to design molecules and substrates having specific optical, mechanical and electronic functions, thus opening the way to the fabrication of real nano-machines. Manipulation of individual atoms and molecules has also opened up completely new areas of research and knowledge, raising fundamental questions of "Optics at the atomic scale", "Mechanics at the atomic scale", Electronics at the atomic scale", "Quantum physics at the atomic sca...

  9. Optical memory based on quantized atomic center-of-mass motion.

    Science.gov (United States)

    Lopez, J P; de Almeida, A J F; Felinto, D; Tabosa, J W R

    2017-11-01

    We report a new type of optical memory using a pure two-level system of cesium atoms cooled by the magnetically assisted Sisyphus effect. The optical information of a probe field is stored in the coherence between quantized vibrational levels of the atoms in the potential wells of a 1-D optical lattice. The retrieved pulse shows Rabi oscillations with a frequency determined by the reading beam intensity and are qualitatively understood in terms of a simple theoretical model. The exploration of the external degrees of freedom of an atom may add another capability in the design of quantum-information protocols using light.

  10. Capillary-Driven Microfluidic Chips for Miniaturized Immunoassays: Efficient Fabrication and Sealing of Chips Using a "Chip-Olate" Process.

    Science.gov (United States)

    Temiz, Yuksel; Delamarche, Emmanuel

    2017-01-01

    The fabrication of silicon-based microfluidic chips is invaluable in supporting the development of many microfluidic concepts for research in the life sciences and in vitro diagnostic applications such as the realization of miniaturized immunoassays using capillary-driven chips. While being extremely abundant, the literature covering microfluidic chip fabrication and assay development might not have addressed properly the challenge of fabricating microfluidic chips on a wafer level or the need for dicing wafers to release chips that need then to be further processed, cleaned, rinsed, and dried one by one. Here, we describe the "chip-olate" process wherein microfluidic structures are formed on a silicon wafer, followed by partial dicing, cleaning, and drying steps. Then, integration of reagents (if any) can be done, followed by lamination of a sealing cover. Breaking by hand the partially diced wafer yields individual chips ready for use.

  11. A digital autoradiography system based on the Medipix2 chip: images of {sup 3}H and {sup 14}C microscales

    Energy Technology Data Exchange (ETDEWEB)

    Mettivier, Giovanni; Montesi, Maria C. E-mail: montesi@na.infn.it; Russo, Paolo

    2004-02-01

    In the framework of the MAMA project, funded by INFN, we have assembled a digital imaging system for beta and gamma autoradiography based on the Medipix2 single photon counting read-out chip bump-bonded to a 300 {mu}m thick silicon pixel detector. This system has 256x256 square pixels of 55 {mu}m pitch for a total sensitive area of 14x14 mm{sup 2}. Each pixel contains two discriminators and a 13-bit counter. The detection threshold is about 6 keV and a noise is about 10{sup -3} cps/mm{sup 2}. Real time images have been obtained of {sup 3}H and {sup 14}C autoradiographic scales. The minimum detectable activity is 0.32 Bq in 14 h for {sup 3}H and 0.012 Bq in 10 h for {sup 14}C.

  12. Pulse Generator for Ultrasonic Piezoelectric Transducer Arrays Based on a Programmable System-on-Chip (PSoC

    Directory of Open Access Journals (Sweden)

    Pedro Acevedo

    2017-04-01

    Full Text Available This paper describes the design of a pulse generator to excite PZT and PVDF ultrasonic transducer arrays, based on the Programmable System-on-Chip (PSoC module. In this module, using programmable logic different pulses were implemented; these pulses are required in ultrasonic applications for multiple channels to excite PZT and PVDF transducer arrays. To excite multiple elements, bursts are required which can be generated simultaneously or out of phase, generating dynamic wave fronts. For medical applications where bidirectional blood flow is detected burst and quadrature pulses are used. These pulses can be generated independently or in combinations, as simultaneous pulses, shift pulses or burst. This module can operate with programmable frequencies from 3-74 MHz; its programming may be versatile covering a wide range of ultrasonic applications.

  13. A new electrowetting lab-on-a-chip platform based on programmable and virtual wall-less channels

    Science.gov (United States)

    Banerjee, Ananda; Kreit, Eric; Dhindsa, Manjeet; Heikenfeld, Jason; Papautsky, Ian

    2011-02-01

    Microscale liquid handling based on electrowetting has been previously demonstrated by several groups. Such liquid manipulation however is limited to control of individual droplets, aptly termed digital microfluidics. The inability to form continuous channels thus prevents conventional microfluidic sample manipulation and analysis approaches, such as electroosmosis and electrophoresis. In this paper, we discuss our recent progress on the development of electrowettingbased virtual channels. These channels can be created and reconfigured on-demand and preserve their shape without external stimulus. We also discuss recent progress towards demonstrating electroosmotic flows in such microchannels for fluid transport. This would permit a variety of basic functionalities in this new platform including sample transport and mixing between various functional areas of the chip.

  14. Flexible readout and integration sensor (FRIS): a bio-inspired, system-on-chip, event-based readout architecture

    Science.gov (United States)

    Lin, Joseph H.; Pouliquen, Philippe O.; Andreou, Andreas G.; Goldberg, Arnold C.; Rizk, Charbel G.

    2012-06-01

    We present a bio-inspired system-on-chip focal plane readout architecture which at the system level, relies on an event based sampling scheme where only pixels within a programmable range of photon flux rates are output. At the pixel level, a one bit oversampled analog-to-digital converter together with a decimator allows for the quantization of signals up to 26 bits. Furthermore, digital non-uniformity correction of both gain and offset errors is applied at the pixel level prior to readout. We report test results for a prototype array fabricated in a standard 90nm CMOS process. Tests performed at room and cryogenic temperatures demonstrate the capability to operate at a temporal noise ratio as low as 1.5, an electron well capacity over 100Ge-, and an ADC LSB down to 1e-.

  15. Microfluidic Chip-based Nucleic Acid Testing using Gingival Crevicular Fluid as a New Technique for Detecting HIV-1 Infection

    Directory of Open Access Journals (Sweden)

    Alex Willyandre

    2013-05-01

    Full Text Available Transmission of HIV-1 infection by individuals in window period who are tested negative in conventional HIV-1 detection would pose the community with serious problems. Several diagnostic tools require specific labora-tory equipment, perfect timing of diagnosis, antibody to HIV-1, and invasive technique to get sample for examination, until high amount of time to process the sample as well as accessibility of remote areas. Many attempts have been made to solve those problems to come to a new detection technique. This review aims to give information about the current development technique for detection of HIV infection. Microfluidic Chip-based Nucleic Acid Testing is currently introduced for detection of HIV-1 infection. This review also cover the possible usage of gingival crevicular fluid as sample specimen that could be taken noninvasively from the individual.DOI: 10.14693/jdi.v18i2.63

  16. Polymer-based Hybrid Integrated Photonic Devices for Silicon On-chip Modulation and Board-level Optical Interconnects

    CERN Document Server

    Zhang, Xingyu; Lin, Xiaohui; Subbaraman, Harish; Chen, Ray T

    2014-01-01

    The accelerating increase in information traffic demands the expansion of optical access network systems that require cost reduction of optical and photonic components. Low cost, ease of fabrication, and integration capabilities of low optical-loss polymers make them attractive for photonic applications. In addition to passive wave-guiding components, electro-optic (EO) polymers consisting of a polymeric matrix doped with organic nonlinear chromophores have enabled wide-RF-bandwidth and low-power optical modulators. Beside board level passive and active optical components, compact on-chip modulators (a few 100 micronmeters to a few millimeters) have been made possible by hybrid integration of EO polymers onto the silicon platform. This paper summarizes some of the recent progress in polymer based optical modulators and interconnects. A highly linear, broadband directional coupler modulator for use in analog optical links and compact, and low-power silicon/polymer hybrid slot photonic crystal waveguide modulat...

  17. Correlative atomic force microscopy and localization-based super-resolution microscopy: revealing labelling and image reconstruction artefacts.

    Science.gov (United States)

    Monserrate, Aitor; Casado, Santiago; Flors, Cristina

    2014-03-17

    Hybrid microscopy: A correlative microscopy tool that combines in situ super-resolution fluorescence microscopy based on single-molecule localization and atomic force microscopy is presented. Direct comparison with high- resolution topography allows the authors to improve fluorescence labeling and image analysis in super-resolution imaging. © 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  18. Development Of Beam Position And Profile Monitor Based On Light Radiation Of Atoms Excited By The Beam Particles

    CERN Document Server

    Balalykin, N I; Brovko, O I; Bykovsky, V F; Dietrich, J; Kamerdzhiev, V; Meshkov, I N; Mohos, I; Parfenov, A N

    2004-01-01

    Particle beam position and profile monitor based on registration of the light radiated by residual gas atoms is being developed by collaboration JINR-Forschungszentrum Jülich. Proposed device and first experiments have been performed at Nuclotron (JINR) and COSY (FZJ) accelerators are presented in this report.

  19. Mobile setup for synchrotron based in situ characterization during thermal and plasma-enhanced atomic layer deposition

    NARCIS (Netherlands)

    Dendooven, Jolien; Solano, Eduardo; Minjauw, Matthias M; Van de Kerckhove, Kevin; Coati, Alessandro; Fonda, Emiliano; Portale, Giuseppe; Garreau, Yves; Detavernier, Christophe

    2016-01-01

    We report the design of a mobile setup for synchrotron based in situ studies during atomic layer processing. The system was designed to facilitate in situ grazing incidence small angle x-ray scattering (GISAXS), x-ray fluorescence (XRF), and x-ray absorption spectroscopy measurements at synchrotron

  20. Fabrication of large scale nanostructures based on a modified atomic force microscope nanomechanical machining system.

    Science.gov (United States)

    Hu, Z J; Yan, Y D; Zhao, X S; Gao, D W; Wei, Y Y; Wang, J H

    2011-12-01

    The atomic force microscope (AFM) tip-based nanomechanical machining has been demonstrated to be a powerful tool for fabricating complex 2D∕3D nanostructures. But the machining scale is very small, which holds back this technique severely. How to enlarge the machining scale is always a major concern for the researches. In the present study, a modified AFM tip-based nanomechanical machining system is established through combination of a high precision X-Y stage with the moving range of 100 mm × 100 mm and a commercial AFM in order to enlarge the machining scale. It is found that the tracing property of the AFM system is feasible for large scale machining by controlling the constant normal load. Effects of the machining parameters including the machining direction and the tip geometry on the uniform machined depth with a large scale are evaluated. Consequently, a new tip trace and an increasing load scheme are presented to achieve a uniform machined depth. Finally, a polymer nanoline array with the dimensions of 1 mm × 0.7 mm, the line density of 1000 lines/mm and the average machined depth of 150 nm, and a 20 × 20 polymer square holes array with the scale of 380 μm × 380 μm and the average machined depth of 250 nm are machined successfully. The uniform of the machined depths for all the nanostructures is acceptable. Therefore, it is verified that the AFM tip-based nanomechanical machining method can be used to machine millimeter scale nanostructures.

  1. Improved zero-order fringe positioning algorithms in white light interference based atomic force microscopy

    Science.gov (United States)

    Hu, Chi; Liu, Xiaojun; Yang, Wenjun; Lu, Wenlong; Yu, Nengguo; Chang, Suping

    2018-01-01

    In white light interference based atomic force microscopy (WLIAFM), the vertical displacement of the probe is obtained by zero-order fringe positioning on the probe cantilever, so the accuracy of zero-order fringe positioning will affect directly that of the WLIAFM. However, due to non-uniform distribution of light intensity and photoelectric noises, accurate zero-order fringe positioning becomes a problem. In this paper, two algorithms are proposed to improve the zero-order fringe positioning accuracy. In the first algorithm which is called improved maximum algorithm, multi-row maximum positions of the interference fringes are obtained and error theory is applied to eliminate erroneous maximum positions, then the average of remaining maximum positions is used as the zero-order fringe position. Another is called phase evaluation algorithm, in which wavelet transform is applied to eliminate effects from disturbances mentioned above and Hilbert transform is used for phase evaluation to obtain the zero-order fringe position. The practicability and accuracy of the two algorithms have been verified by series of experiments. The experiment results indicate that both two algorithms are suitable in this condition and the phase evaluation algorithm has higher accuracy while the improved maximum algorithm has higher processing speed.

  2. Role of atomic layer deposited aluminum oxide as oxidation barrier for silicon based materials

    Energy Technology Data Exchange (ETDEWEB)

    Fiorentino, Giuseppe, E-mail: g.fiorentino@tudelft.nl; Morana, Bruno [Department of Microelectronic, Delft University of Technology, Feldmannweg 17, 2628 CT Delft (Netherlands); Forte, Salvatore [Department of Electronic, University of Naples Federico II, Piazzale Tecchio, 80125 Napoli (Italy); Sarro, Pasqualina Maria [Department of Microelectronic, Delft University of Technology, Feldmannweg 17, 2628 CT, Delft (Netherlands)

    2015-01-15

    In this paper, the authors study the protective effect against oxidation of a thin layer of atomic layer deposited (ALD) aluminum oxide (Al{sub 2}O{sub 3}). Nitrogen doped silicon carbide (poly-SiC:N) based microheaters coated with ALD Al{sub 2}O{sub 3} are used as test structure to investigate the barrier effect of the alumina layers to oxygen and water vapor at very high temperature (up to 1000 °C). Different device sets have been fabricated changing the doping levels, to evaluate possible interaction between the dopants and the alumina layer. The as-deposited alumina layer morphology has been evaluated by means of AFM analysis and compared to an annealed sample (8 h at 1000 °C) to estimate the change in the grain structure and the film density. The coated microheaters are subjected to very long oxidation time in dry and wet environment (up to 8 h at 900 and 1000 °C). By evaluating the electrical resistance variation between uncoated reference devices and the ALD coated devices, the oxide growth on the SiC is estimated. The results show that the ALD alumina coating completely prevents the oxidation of the SiC up to 900 °C in wet environment, while an oxide thickness reduction of 50% is observed at 1000 °C compared to uncoated devices.

  3. Physics-based all-atom modeling of RNA energetics and structure.

    Science.gov (United States)

    Smith, Louis G; Zhao, Jianbo; Mathews, David H; Turner, Douglas H

    2017-09-01

    The database of RNA sequences is exploding, but knowledge of energetics, structures, and dynamics lags behind. All-atom computational methods, such as molecular dynamics, hold promise for closing this gap. New algorithms and faster computers have accelerated progress in improving the reliability and accuracy of predictions. Currently, the methods can facilitate refinement of experimentally determined nuclear magnetic resonance and x-ray structures, but are 'unreliable' for predictions based only on sequence. Much remains to be discovered, however, about the many molecular interactions driving RNA folding and the best way to approximate them quantitatively. The large number of parameters required means that a wide variety of experimental results will be required to benchmark force fields and different approaches. As computational methods become more reliable and accessible, they will be used by an increasing number of biologists, much as x-ray crystallography has expanded. Thus, many fundamental physical principles underlying the computational methods are described. This review presents a summary of the current state of molecular dynamics as applied to RNA. It is designed to be helpful to students, postdoctoral fellows, and faculty who are considering or starting computational studies of RNA. WIREs RNA 2017, 8:e1422. doi: 10.1002/wrna.1422. © 2017 Wiley Periodicals, Inc.

  4. Compact metal probes: a solution for atomic force microscopy based tip-enhanced Raman spectroscopy.

    Science.gov (United States)

    Rodriguez, R D; Sheremet, E; Müller, S; Gordan, O D; Villabona, A; Schulze, S; Hietschold, M; Zahn, D R T

    2012-12-01

    There are many challenges in accomplishing tip-enhanced Raman spectroscopy (TERS) and obtaining a proper tip is probably the greatest one. Since tip size, composition, and geometry are the ultimate parameters that determine enhancement of intensity and lateral resolution, the tip becomes the most critical component in a TERS experiment. However, since the discovery of TERS the cantilevers used in atomic force microscopy (AFM) have remained basically the same: commercial silicon (or silicon nitride) tips covered by a metallic coating. The main issues of using metal-coated silicon cantilevers, such as wearing off of the metal layer or increased tip radius, can be completely overcome by using all-metal cantilevers. Until now in TERS experiments such probes have only been used in a scanning tunneling microscope or in a tuning fork-based shear force microscope but not in AFM. In this work for the first time, we show the use of compact silver cantilevers that are fully compatible with contact and tapping modes in AFM demonstrating their superb performance in TERS experiments.

  5. Mechanical characterization of polymeric thin films by atomic force microscopy based techniques.

    Science.gov (United States)

    Passeri, Daniele; Rossi, Marco; Tamburri, Emanuela; Terranova, Maria Letizia

    2013-02-01

    Polymeric thin films have been awakening continuous and growing interest for application in nanotechnology. For such applications, the assessment of their (nano)mechanical properties is a key issue, since they may dramatically vary between the bulk and the thin film state, even for the same polymer. Therefore, techniques are required for the in situ characterization of mechanical properties of thin films that must be nondestructive or only minimally destructive. Also, they must also be able to probe nanometer-thick ultrathin films and layers and capable of imaging the mechanical properties of the sample with nanometer lateral resolution, since, for instance, at these scales blends or copolymers are not uniform, their phases being separated. Atomic force microscopy (AFM) has been proposed as a tool for the development of a number of techniques that match such requirements. In this review, we describe the state of the art of the main AFM-based methods for qualitative and quantitative single-point measurements and imaging of mechanical properties of polymeric thin films, illustrating their specific merits and limitations.

  6. Terahertz response of fractal meta-atoms based on concentric rectangular square resonators

    Energy Technology Data Exchange (ETDEWEB)

    Song, Zhiqiang; Zhao, Zhenyu, E-mail: zyzhao@shnu.edu.cn; Shi, Wangzhou [Department of Physics, Shanghai Normal University, Shanghai 200234 (China); Peng, Wei [State Key Laboratory of Functional Materials for Informatics, Shanghai Institute of Microsystem and Information Technology, Chinese Academy of Sciences, Shanghai 200050 (China)

    2015-11-21

    We investigate the terahertz electromagnetic responses of fractal meta-atoms (MAs) induced by different mode coupling mechanisms. Two types of MAs based on concentric rectangular square (CRS) resonators are presented: independent CRS (I-CRS) and junctional-CRS (J-CRS). In I-CRS, each resonator works as an independent dipole so as to result in the multiple resonance modes when the fractal level is above 1. In J-CRS, however, the generated layer is rotated by π/2 radius to the adjacent CRS in one MA. The multiple resonance modes are coupled into a single mode resonance. The fractal level increasing induces resonance modes redshift in I-CRS while blueshift in J-CRS. When the fractal level is below 4, the mode Q factor of J-CRS is in between the two modes of I-CRS; when the fractal level is 4 or above, the mode Q factor of J-CRS exceeds the two modes of I-CRS. Furthermore, the modulation depth (MD) decreases in I-CRS while it increases in J-CRS with the increase in fractal levels. The surface currents analysis reveals that the capacitive coupling of modes in I-CRS results in the modes redshift, while the conductive coupling of modes in J-CRS induces the mode blueshift. A high Q mode with large MD can be achieved via conductive coupling between the resonators of different scales in a fractal MA.

  7. Intelligent tuning method of PID parameters based on iterative learning control for atomic force microscopy.

    Science.gov (United States)

    Liu, Hui; Li, Yingzi; Zhang, Yingxu; Chen, Yifu; Song, Zihang; Wang, Zhenyu; Zhang, Suoxin; Qian, Jianqiang

    2018-01-01

    Proportional-integral-derivative (PID) parameters play a vital role in the imaging process of an atomic force microscope (AFM). Traditional parameter tuning methods require a lot of manpower and it is difficult to set PID parameters in unattended working environments. In this manuscript, an intelligent tuning method of PID parameters based on iterative learning control is proposed to self-adjust PID parameters of the AFM according to the sample topography. This method gets enough information about the output signals of PID controller and tracking error, which will be used to calculate the proper PID parameters, by repeated line scanning until convergence before normal scanning to learn the topography. Subsequently, the appropriate PID parameters are obtained by fitting method and then applied to the normal scanning process. The feasibility of the method is demonstrated by the convergence analysis. Simulations and experimental results indicate that the proposed method can intelligently tune PID parameters of the AFM for imaging different topographies and thus achieve good tracking performance. Copyright © 2017 Elsevier Ltd. All rights reserved.

  8. [Efficiency of hemoperfusion on clearing thallium based on atomic absorption spectrometry].

    Science.gov (United States)

    Tian, Tian; Wang, Yongan; Nie, Zhiyong; Wang, Jiao; Peng, Xiaobo; Yuan, Ye; Li, Wanhua; Qiu, Zewu; Xue, Yanping; Xiong, Yiru

    2015-04-01

    To determine thallium in whole blood by atomic absorption detection method, and to investigate the eliminating effect of hemoperfusion (HP) for thallium in blood. The blood of Beagle dogs which had not exposed to thallium before were obtained for preparation of thallium nitrate ( TlNO3 )-containing solution in three concentrations according to the conversion formula based on animal weight and volume of blood. HP was performed in the simulated in vivo environment. The content of TlNO3 in blood of the next group was determined on the amount of TlNO3 for the last HP of the former dose group. Thallium quantity in different samples was measured with atomic absorption spectrometer blood samples before and after HP. Finally, the thallium concentration in blood was analyzed statistically. Thallium concentrations showed a good linear relationship in the range of 0-200 μg/L (r = 0.998 4). The intra-day precision (RSD) was lower than 4.913%, the intra-day recovery rate was 96.2%-111.9%; the inter-day precision (RSD) was lower than 7.502%, the inter-day recovery rate was 89.6%-105.2%. The concentration of thallium in blood was significantly reduced after HP per time in high, middle, and low dose groups [(453.43 ± 27.80) mg/L to (56.09 ± 14.44) mg/L in high dose group, F = 8.820, P = 0.003; (64.51 ± 13.60) mg/L to (3.19 ± 0.23) mg/L in middle dose group, F = 36.312, P = 0.000; (5.40 ± 0.98) mg/L to (0.38 ± 0.25) mg/L in low dose group, F = 46.240, P = 0.000 ]. The adsorption rate of four times of HP in high, middle and low dose group were (87.63 ± 2.48 )%, (95.06 ± 1.54 )% and (92.76 ± 4.87)%, respectively, without significant difference (F = 4.231, P = 0.070). The method for measuring thallium was established, and it shows a very stable, simple, sensitive for determination of thallium. HP can effectively remove thallium from blood. Thallium concentration can be reduced by 90% after four times of HP. HP is also effective even when thallium concentration is not high.

  9. High power laser source for atom cooling based on reliable telecoms technology with all fibre frequency stabilisation

    Science.gov (United States)

    Legg, Thomas; Farries, Mark

    2017-02-01

    Cold atom interferometers are emerging as important tools for metrology. Designed into gravimeters they can measure extremely small changes in the local gravitational field strength and be used for underground surveying to detect buried utilities, mineshafts and sinkholes prior to civil works. To create a cold atom interferometer narrow linewidth, frequency stabilised lasers are required to cool the atoms and to setup and measure the atom interferometer. These lasers are commonly either GaAs diodes, Ti Sapphire lasers or frequency doubled InGaAsP diodes and fibre lasers. The InGaAsP DFB lasers are attractive because they are very reliable, mass-produced, frequency controlled by injection current and simply amplified to high powers with fibre amplifiers. In this paper a laser system suitable for Rb atom cooling, based on a 1560nm DFB laser and erbium doped fibre amplifier, is described. The laser output is frequency doubled with fibre coupled periodically poled LiNbO3 to a wavelength of 780nm. The output power exceeds 1 W at 780nm. The laser is stabilised at 1560nm against a fibre Bragg resonator that is passively temperature compensated. Frequency tuning over a range of 1 GHz is achieved by locking the laser to sidebands of the resonator that are generated by a phase modulator. This laser design is attractive for field deployable rugged systems because it uses all fibre coupled components with long term proven reliability.

  10. Structural influence on atomic hopping and electronic states of Pd-based bulk metallic glasses

    OpenAIRE

    Tang, X.-P.; Löffler, Jörg F.; Schwarz, R. B.; Johnson, William L.; Wu, Yue

    2005-01-01

    Atomic motion and electronic structures of Pd–Ni–Cu–P bulk metallic glasses were investigated using 31P nuclear magnetic resonance. The hopping rate of P atoms was determined by the stimulated echo technique. Significant hopping was observed in all alloys well below the glass transition temperature. Increasing the Cu content to above 25 at. % increases P hopping significantly, consistent with the previous finding that the openness of the structure increases with Cu content. In contrast, P h...

  11. Quantum gates in mesoscopic atomic ensembles based on adiabatic passage and Rydberg blockade

    OpenAIRE

    Beterov, I. I.; Saffman, M.; Yakshina, E. A.; Zhukov, V. P.; Tretyakov, D. B.; Entin, V. M.; Ryabtsev, I. I.; Mansell, C. W.; MacCormick, C.; Bergamini, S.; Fedoruk, M. P.

    2012-01-01

    We present schemes for geometric phase compensation in adiabatic passage which can be used for the implementation of quantum logic gates with atomic ensembles consisting of an arbitrary number of strongly interacting atoms. Protocols using double sequences of stimulated Raman adiabatic passage (STIRAP) or adiabatic rapid passage (ARP) pulses are analyzed. Switching the sign of the detuning between two STIRAP sequences, or inverting the phase between two ARP pulses, provides state transfer wit...

  12. An Integrated Unix-based CAD System for the Design and Testing of Custom VLSI Chips

    Science.gov (United States)

    Deutsch, L. J.

    1985-01-01

    A computer aided design (CAD) system that is being used at the Jet Propulsion Laboratory for the design of custom and semicustom very large scale integrated (VLSI) chips is described. The system consists of a Digital Equipment Corporation VAX computer with the UNIX operating system and a collection of software tools for the layout, simulation, and verification of microcircuits. Most of these tools were written by the academic community and are, therefore, available to JPL at little or no cost. Some small pieces of software have been written in-house in order to make all the tools interact with each other with a minimal amount of effort on the part of the designer.

  13. Thermal analysis of a phase change material based heat sink for cooling protruding electronic chips

    Science.gov (United States)

    Faraji, Mustapha; El Qarnia, Hamid; Lakhal, El Khadir

    2009-09-01

    This work aims to numerically study the melting natural convection in a rectangular enclosure heated by three discreet protruding electronic chips. The heat sources generate heat at a constant and uniform volumetric rate. A part of the power generated in the heat sources is dissipated to a phase change material (PCM, n-eicosane with melting temperature, Tm = 36°C). Numerical investigations were carried out in order to examine the effects of the plate thickness on the maximum temperature of electronic components, the percentage contribution of plate heat conduction on the total removed heat and temperature profiles in the plate. Correlations for the dimensionless secured working time (time to reach the threshold temperature, Tcr = 75°C) and the corresponding liquid fraction were derived.

  14. Ligation-based molecular tools for lab-on-a-chip devices.

    Science.gov (United States)

    Melin, Jonas; Jarvius, Jonas; Larsson, Chatarina; Söderberg, Ola; Landegren, Ulf; Nilsson, Mats

    2008-06-01

    Molecular diagnostics can offer early detection of disease, improved diagnostic accuracy, and qualified follow-up. Moreover, the use of microfluidic devices can in principle render these analyses quickly and user-friendly, placing them within the reach of the general practitioner and maybe even in households. However, the progress launching such devices has been limited so far. We propose that an important limiting factor has been the difficulty of establishing molecular assays suitable for microfabricated formats. The assays should be capable of monitoring a wide range of molecules, including genomic DNA, RNA and proteins with secondary modifications and interaction partners, and they must exhibit excellent sensitivity and specificity. We discuss these problems and describe a series of molecular tools that may present new opportunities for lab-on-a-chip devices at the point-of-care.

  15. Enabling application-level performance guarantees in network-based systems on chip by applying dataflow analysis

    NARCIS (Netherlands)

    Hansson, A.; Hansson, A.; Wiggers, M.H.; Moonen, A.; Goossens, K.; Bekooij, Marco Jan Gerrit; Bekooij, M.

    2009-01-01

    A growing number of applications, often with real-time requirements, are integrated on the same system on chip (SoC), in the form of hardware and software intellectual property (IP). To facilitate real-time applications, networks on chip (NoC) guarantee bounds on latency and throughput. These

  16. Atomic layer deposition of tantalum nitride based thin films from cyclopentadienyl type precursor

    Energy Technology Data Exchange (ETDEWEB)

    Anacleto, A. Correia, E-mail: anthony.correia@airliquide.co [Air Liquide, Centre de Recherche Claude Delorme, 1, chemin de la porte des loges - Les Loges en Josas - BP 126, 78354 Jouy en Josas Cedex (France); Zauner, A.; Cany-Canian, D. [Air Liquide, Centre de Recherche Claude Delorme, 1, chemin de la porte des loges - Les Loges en Josas - BP 126, 78354 Jouy en Josas Cedex (France); Gatineau, J. [Air Liquide, Air Liquide Laboratories, 28 Wadai, Tsukuba-shi, Ibaraki-Pref. 300-4247 (Japan); Hugon, M.-C. [Laboratoire de Physique des Gaz et Plasmas, UMR 8578, CNRS - Universite Paris Sud 11, 15, rue Georges Clemenceau, 91405 Orsay Cedex (France)

    2010-10-29

    Tantalum nitride based thin films have been deposited on p-Si (100) and SiO{sub 2}/Si by thermal Atomic Layer Deposition (ALD) using either the Ta(= N{sup t}Bu)(NEt{sub 2}){sub 3} or a derivative, in which one dialkylamido ligand is substituted by a {eta}{sup 5}-cyclopentadienyl ({eta}{sup 5}-Cp), as metal organic precursors with ammonia as reducing agent. TaN{sub x}C{sub y} self-limiting temperature dependent ALD growth was achieved for the TaCp(= N{sup t}Bu)(NEt{sub 2}){sub 2}/NH{sub 3} process with a growth rate of 0.51-0.91 A cycle{sup -1} in the 400-425 {sup o}C temperature range while between 240 and 280 {sup o}C, the growth of TaN based films from the Ta(= N{sup t}Bu)(NEt{sub 2}){sub 3} was accompanied by a partial decomposition of the precursor. The {eta}{sup 5}-cyclopentadienyl type compound allows lower nitrogen content in the precursor and thereafter in the deposited film. Although N/Ta ratio is close to one at temperatures of 390 and 400 {sup o}C, as analyzed by Rutherford Back Scattering and Nuclear Reaction Analysis, films were amorphous independently of the deposition temperature. Since Ta-C bonds are present in the Cp derivative, the TaCp(= N{sup t}Bu)(NEt{sub 2}){sub 2} tends more likely to form tantalum carbide compared to Ta(= N{sup t}Bu)(NEt{sub 2}){sub 3}, which leads to lower thin film resistivity. For both precursors, employed in their respective ALD window, films were smooth with a root-mean-square roughness close to 1 nm.

  17. Facile preparation of protein stationary phase based on polydopamine/graphene oxide platform for chip-based open tubular capillary electrochromatography enantioseparation.

    Science.gov (United States)

    Liang, Ru-Ping; Wang, Xiao-Ni; Liu, Chun-Ming; Meng, Xiang-Ying; Qiu, Jian-Ding

    2014-01-03

    A novel chip-based enantioselective open-tubular capillary electrochromatography (OT-CEC) was developed employing bovine serum albumin (BSA) conjugated polydopamine-graphene oxide (PDA/GO) nanocomposites (PDA/GO/BSA) as stationary phase. After the poly(dimethylsiloxane) (PDMS) microfluidic chip was filled with a freshly prepared solution containing dopamine and graphene oxide, PDA/GO nanocomposites were formed and deposited on the inner wall of microchannel as permanent coating via the oxidation of dopamine by the oxygen dissolved in the solution. The PDA/GO-coated PDMS microchips not only have the adhesion of PDA that make them easily immobilized in the microchannel, but also have the larger surface and excellent biocompatibility of graphene which can incorporate much more biomolecules and well maintain their biological activity. In addition, incorporation of GO in PDA film can make surface morphology more rough, which is beneficial for enhancing the loading capacity of proteins in the microchannels and increasing sample capacity of OT-CEC columns. BSA was stably immobilized in the PDMS microchannel to fabricate a protein-stationary phase. Compared with the native PDMS microchannels, the modified surfaces exhibited much better wettability, more stable electroosmotic mobility, and less nonspecific adsorption. The efficient separation of chiral amino acids (tryptophan and threonine) and chiral dipeptide demonstrate that the constructed OT-CEC columns own ideal enantioselectivity. The presented strategy using PDA/GO coating as a versatile platform for facile conjugation of proteins may offer new processing strategies to prepare a functional surface designed on microfluidic chips. Copyright © 2013 Elsevier B.V. All rights reserved.

  18. Demonstration of a 10 V programmable Josephson voltage standard system based on a multi-chip technique

    Energy Technology Data Exchange (ETDEWEB)

    Yamada, T; Sasaki, H; Yamamori, H; Shoji, A [National Institute of Advanced Industrial Science and Technology, 1-1-1 Umezono, Tsukuba 305-8568 (Japan)], E-mail: yamada-takahiro@aist.go.jp

    2008-03-01

    We have demonstrated a programmable Josephson voltage standard (PJVS) operation up to 10.84 V using a multi-chip technique. We combined two PJVS chips fabricated using NbN/(TiN{sub x}/NbN){sub 2} junction technology. Each PJVS chip was mounted on a single chip carrier using bonding wire, and the two chip carriers were connected by a simple Cu lead wire, and mounted on a cryocooler. High-precision measurements confirmed flat voltage steps for all 22 cells, with a peak-to-peak variation of 100 nV and wide margins of at least 0.35 mA. We also confirmed the stability of the voltage steps in spite of a temperature and RF frequency variation of {+-} 0.1 K and {+-} 0.1 GHz, respectively.

  19. Microfluidic chip based micro RNA detection through the combination of fluorescence and surface enhanced Raman scattering techniques

    Science.gov (United States)

    Wang, Zhile; Zong, Shenfei; Wang, Zhuyuan; Wu, Lei; Chen, Peng; Yun, Binfeng; Cui, Yiping

    2017-03-01

    We present a novel microfluidic chip based method for the detection of micro RNA (miRNA) via the combination of fluorescence and surface enhanced Raman scattering (SERS) spectroscopies. First, silver nanoparticles (Ag NPs) are immobilized onto a glass slide, forming a SERS enhancing substrate. Then a specificially designed molecular beacon (MB) is attached to the SERS substrate. The 3‧ end of the MB is decorated with a thiol group to facilitate the attachment of the MB, while the 5‧ end of the MB is labeled with an organic dye 6-FAM, which is used both as the fluorophore and SERS reporter. In the absence of target miRNA, the MB will form a hairpin structure, making 6-FAM close to the Ag NPs. Hence, the fluorescence of 6-FAM will be quenched and the Raman signal of 6-FAM will be enhanced. On the contrary, with target miRNA present, hybridization between the miRNA and MB will unfold the MB and increase the distance between 6-FAM and the Ag NPs. Thus the fluorescence of 6-FAM will recover and the SERS signal of 6-FAM will decrease. So the target miRNA will simultaneously introduce opposite changing trends in the intensities of the fluorescence and SERS signals. By combining the opposite changes in the two optical spectra, an improved sensitivity and linearity toward the target miRNA is achieved as compared with using solely fluorescence or SERS. Moreover, introducing the microfluidic chip can reduce the reaction time, reagent dosage and complexity of detection. With the improved sensitivity and simplicity, we anticipate that the presented method can have great potential in the investigation of miRNA related diseases.

  20. Atomic rivals

    Energy Technology Data Exchange (ETDEWEB)

    Goldschmidt, B.

    1990-01-01

    This book is a memoir of rivalries among the Allies over the bomb, by a participant and observer. Nuclear proliferation began in the uneasy wartime collaboration of the United States, England, Canada, and Free France to produce the atom bomb. Through the changes of history, a young French chemist had a role in almost every act of this international drama. This memoir is based on Goldschmidt's own recollections, interviews with other leading figures, and 3,000 pages of newly declassified documents in Allied archives. From his own start as Marie Curie's lab assistant, Goldschmidt's career was closely intertwined with Frances complicated rise to membership in the nuclear club. As a refugee from the Nazis, he became part of the wartime nuclear energy project in Canada and found himself the only French scientist to work (although briefly) on the American atom bomb project.

  1. Liquid carry-over in an injection moulded all-polymer chip system for immiscible phase magnetic bead-based solid-phase extraction

    Energy Technology Data Exchange (ETDEWEB)

    Kistrup, Kasper, E-mail: kkis@nanotech.dtu.dk [Department of Micro- and Nanotechnology, Technical University of Denmark, DTU Nanotech, Building 345 East, DK-2800 Kongens Lyngby (Denmark); Skotte Sørensen, Karen, E-mail: karen@nanotech.dtu.dk [Department of Micro- and Nanotechnology, Technical University of Denmark, DTU Nanotech, Building 345 East, DK-2800 Kongens Lyngby (Denmark); Center for Integrated Point of Care Technologies (CiPoC), DELTA, Venlighedsvej 4, DK-2870 Hørsholm (Denmark); Wolff, Anders, E-mail: anders.wolff@nanotech.dtu.dk [Department of Micro- and Nanotechnology, Technical University of Denmark, DTU Nanotech, Building 345 East, DK-2800 Kongens Lyngby (Denmark); Fougt Hansen, Mikkel, E-mail: mikkel.hansen@nanotech.dtu.dk [Department of Micro- and Nanotechnology, Technical University of Denmark, DTU Nanotech, Building 345 East, DK-2800 Kongens Lyngby (Denmark)

    2015-04-15

    We present an all-polymer, single-use microfluidic chip system produced by injection moulding and bonded by ultrasonic welding. Both techniques are compatible with low-cost industrial mass-production. The chip is produced for magnetic bead-based solid-phase extraction facilitated by immiscible phase filtration and features passive liquid filling and magnetic bead manipulation using an external magnet. In this work, we determine the system compatibility with various surfactants. Moreover, we quantify the volume of liquid co-transported with magnetic bead clusters from Milli-Q water or a lysis-binding buffer for nucleic acid extraction (0.1 (v/v)% Triton X-100 in 5 M guanidine hydrochloride). A linear relationship was found between the liquid carry-over and mass of magnetic beads used. Interestingly, similar average carry-overs of 1.74(8) nL/µg and 1.72(14) nL/µg were found for Milli-Q water and lysis-binding buffer, respectively. - Highlights: • We present an all-polymer mass producible passive filled microfluidic chip system. • Rapid system fabrication is obtained by injection moulding and ultrasonic welding. • The system is made for single-use nucleic acid extraction using magnetic beads. • We systematically map compatibility of the chip system with various surfactants. • We quantify the volume carry-over of magnetic beads in water and 0.1% triton-X solution.

  2. Wood chip moisture on-line measurement system based on the combination of the different methods; Yhdistelmaemittaus hakkeen kosteuden on-line-maeaeritykseen

    Energy Technology Data Exchange (ETDEWEB)

    Jaervinen, T. (VTT Technical Research Centre of Finland, Jyvaeskylae (Finland)); Malinen, J.; Hietala, E. (VTT Technical Research Centre of Finland, Oulu (Finland)); Teppola, T.; Siikanen, S. (VTT Technical Research Centre of Finland, Kuopio (Finland)); Tiitta, M. (Kuopio Univ. (Finland))

    2008-07-01

    The aim of the project is to develop wood chip moisture on-line measurement system based on the combination of different methods. The gauges utilised are nir-, impedance- and radiometric devices. All the measurements are installed in PDU-scale conveyor facility, which is targeted for development and testing fuel and bulk material quality and property measurement technology and devices. The system enables to achieve accurate reference moisture content data and sufficient range of moisture content variation in full scale. The usability and accuracy of the separate measurement methods have been researched by testing in different conditions. As a result it will be suggested the best combination of different methods for each purpose. The actual system will be realised in a separate new project under plan. The combination should have good usability and it should be able to apply to the different types of wood chip like wood chips for pulping and logging residue chips and even to other biomass materials in variable conditions. (orig.)

  3. Rapid and reliable QuEChERS-based LC-MS/MS method for determination of acrylamide in potato chips and roasted coffee

    Science.gov (United States)

    Stefanović, S.; Đorđevic, V.; Jelušić, V.

    2017-09-01

    The aim of this paper is to verify the performance characteristics and fitness for purpose of rapid and simple QuEChERS-based LC-MS/MS method for determination of acrylamide in potato chips and coffee. LC-MS/MS is by far the most suitable analytical technique for acrylamide measurements given its inherent sensitivity and selectivity, as well as capability of analyzing underivatized molecule. Acrylamide in roasted coffee and potato chips wasextracted with water:acetonitrile mixture using NaCl and MgSO4. Cleanup was carried out with MgSO4 and PSA. Obtained results were satisfactory. Recoveries were in the range of 85-112%, interlaboratory reproducibility (Cv) was 5.8-7.6% and linearity (R2) was in the range of 0.995-0.999. LoQ was 35 μg kg-1 for coffee and 20 μg kg-1 for potato chips. Performance characteristic of the method are compliant with criteria for analytical methods validation. Presented method for quantitative determination of acrylamide in roasted coffee and potato chips is fit for purposes of self-control in food industry as well as regulatory controls carried out by the governmental agencies.

  4. Influence of non-edible vegetable based oil as cutting fluid on chip, surface roughness and cutting force during drilling operation of Mild Steel

    Science.gov (United States)

    Susmitha, M.; Sharan, P.; Jyothi, P. N.

    2016-09-01

    Friction between work piece-cutting tool-chip generates heat in the machining zone. The heat generated reduces the tool life, increases surface roughness and decreases the dimensional sensitiveness of work material. This can be overcome by using cutting fluids during machining. They are used to provide lubrication and cooling effects between cutting tool and work piece and cutting tool and chip during machining operation. As a result, important benefits would be achieved such longer tool life, easy chip flow and higher machining quality in the machining processes. Non-edible vegetable oils have received considerable research attention in the last decades owing to their remarkable improved tribological characteristics and due to increasing attention to environmental issues, have driven the lubricant industry toward eco friendly products from renewable sources. In the present work, different non-edible vegetable oils are used as cutting fluid during drilling of Mild steel work piece. Non-edible vegetable oils, used are Karanja oil (Honge), Neem oil and blend of these two oils. The effect of these cutting fluids on chip formation, surface roughness and cutting force are investigated and the results obtained are compared with results obtained with petroleum based cutting fluids and dry conditions.

  5. Cryogenic testing and multi-chip module design of a 31.3-45GHz MHEMT MMIC-based heterodyne receiver for radio astronomy

    Science.gov (United States)

    Hwang, Yuh-Jing; Chiong, Chau-Ching; Chang, Su-Wei; Wei, Tashun; Wong, Wei-Ting; Lin, Yo-Shen; Chen, Ming-Tang; Wang, Huei; Chang, Hong-Yeh

    2008-07-01

    A prototype Q-band millimeter-wave heterodyne receiver based on monolithic microwave integrated circuit (MMIC) chips is designed and tested. The MMIC chips, including two three-stage 31.3-45GHz low-noise amplifier (LNA), a diode balanced mixer and a 4-12GHz IF amplifier, are fabricated by a 0.15-um Gallium-Arsenide (GaAs) metamorphic high-electron mobility transistor (MHEMT) foundry service. The MMIC chips are measured by probe in the gain stage. The three-stage 31.3-45GHz LNA MMIC exhibits 31-35dB gain and 2.8-3.5dB noise figure under room temperature environment. The balanced diode mixer with 31.3-45.0GHz RF frequency range and 27.3-33GHz LO frequency range shows 10-13dB conversion loss under 10-dBm LO pumping over 4-12GHz IF frequency range. The LO power of the mixer is provided by a phase-locked GaAs hetero-junction bipolar transistor (HBT) MMIC voltage-controlled oscillator cascaded by a buffer amplifier. The packaged modules of the individual MHEMT MMIC receiver components are designed for testing under 15-20K cryogenic operating temperature to ensure the low-noise performance. A compact multi-chip receiver module design concept will be presented.

  6. Chips 2020

    CERN Document Server

    2016-01-01

    The release of this second volume of CHIPS 2020 coincides with the 50th anniversary of Moore’s Law, a critical year marked by the end of the nanometer roadmap and by a significantly reduced annual rise in chip performance. At the same time, we are witnessing a data explosion in the Internet, which is consuming 40% more electrical power every year, leading to fears of a major blackout of the Internet by 2020. The messages of the first CHIPS 2020, published in 2012, concerned the realization of quantum steps for improving the energy efficiency of all chip functions. With this second volume, we review these messages and amplify upon the most promising directions: ultra-low-voltage electronics, nanoscale monolithic 3D integration, relevant-data, brain- and human-vision-inspired processing, and energy harvesting for chip autonomy. The team of authors, enlarged by more world leaders in low-power, monolithic 3D, video, and Silicon brains, presents new vistas in nanoelectronics, promising  Moore-like exponential g...

  7. Joint implementation and TA during construction of wood chip based heat supply system in Pisz, Poland. Final report

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    2004-05-01

    This Final Report describes the project 'Wood Chip based Heat Supply System in Pisz, Poland'. Pisz is situated in the North-eastern part of Poland, in the Mazurian Lakes area. The large forests and lakes surrounding the city are heavily influenced by the air pollution, especially with the emissions of SO{sub x}, NO{sub x}, C0{sub 2}, as well as particles from the large number of coal fired boiler stations in the city of Pisz. The State Forest Districts in the area inform that the forests are experiencing health problems, which may be attributed to reduced biodiversity. The supply of heat to the citizens of Pisz was previously covered by 55 coal fired heating stations together with the big local Plywood factory 'Plywood', which produced heat for the district heating system in Pisz from a 11,2 MW coal fired HOB plant. The City Council of Pisz decided to convert from coal to utilisation of the large local wood resources in the heat production and by this reduce the heavy pollution in the area. A Heat Supply Plan according to the Polish Energy Law was prepared in 1999. The Heat Plan describes several alternatives of supplying Pisz with biomass heat. In December 2000 COWI finalised a feasibility study analysing several options for the future heat supply in Pisz. The main conclusion of the feasibility study was to establish a new wood chips fired heating plant for the replacement of both a large number of coal fired heating stations and the heat supply from 'Plywood'. Since the heat supply plan was prepared, the Municipality of Pisz has decided to be independent from the Plywood Factory. Therefore it has been decided to build the new wood chips HOB plant on a Municipality owned site in the eastern part of the city, where the heat supply today is covered by individual oil fired boiler stations. The district heating supply area is hereby additionally extended by also replacing the individual boiler stations in this area. The 26th September

  8. Atomic orbital-based SOS-MP2 with tensor hypercontraction. II. Local tensor hypercontraction

    Science.gov (United States)

    Song, Chenchen; Martínez, Todd J.

    2017-01-01

    In the first paper of the series [Paper I, C. Song and T. J. Martinez, J. Chem. Phys. 144, 174111 (2016)], we showed how tensor-hypercontracted (THC) SOS-MP2 could be accelerated by exploiting sparsity in the atomic orbitals and using graphical processing units (GPUs). This reduced the formal scaling of the SOS-MP2 energy calculation to cubic with respect to system size. The computational bottleneck then becomes the THC metric matrix inversion, which scales cubically with a large prefactor. In this work, the local THC approximation is proposed to reduce the computational cost of inverting the THC metric matrix to linear scaling with respect to molecular size. By doing so, we have removed the primary bottleneck to THC-SOS-MP2 calculations on large molecules with O(1000) atoms. The errors introduced by the local THC approximation are less than 0.6 kcal/mol for molecules with up to 200 atoms and 3300 basis functions. Together with the graphical processing unit techniques and locality-exploiting approaches introduced in previous work, the scaled opposite spin MP2 (SOS-MP2) calculations exhibit O(N2.5) scaling in practice up to 10 000 basis functions. The new algorithms make it feasible to carry out SOS-MP2 calculations on small proteins like ubiquitin (1231 atoms/10 294 atomic basis functions) on a single node in less than a day.

  9. Specific Adaptation of Gas Atomization Processing for Al-Based Alloy Powder for Additive Manufacturing

    Energy Technology Data Exchange (ETDEWEB)

    Anderson, Iver [Ames Lab., Ames, IA (United States); Siemon, John [Alcoa, Inc, Pittsburgh, PA (United States)

    2017-06-30

    The initial three atomization attempts resulted in “freeze-outs” within the pour tubes in the pilot-scale system and yielded no powder. Re-evaluation of the alloy liquidus temperatures and melting characteristics, in collaboration with Alcoa, showed further superheat to be necessary to allow the liquid metal to flow through the pour tube to the atomization nozzle. A subsequent smaller run on the experimental atomization system verified these parameters and was successful, as were all successive runs on the larger pilot scale system. One alloy composition froze-out part way through the atomization on both pilot scale runs. SEM images showed needle formation and phase segregations within the microstructure. Analysis of the pour tube freeze-out microstructures showed that large needles formed within the pour tube during the atomization experiment, which eventually blocked the melt stream. Alcoa verified the needle formation in this alloy using theoretical modeling of phase solidification. Sufficient powder of this composition was still generated to allow powder characterization and additive manufacturing trials at Alcoa.

  10. Atomic force microscopy based investigations of anti-inflammatory effects in lipopolysaccharide-stimulated macrophages.

    Science.gov (United States)

    Pi, Jiang; Cai, Huaihong; Yang, Fen; Jin, Hua; Liu, Jianxin; Yang, Peihui; Cai, Jiye

    2016-01-01

    A new method based on atomic force microscopy (AFM) was developed to investigate the anti-inflammatory effects of drugs on lipopolysaccharide (LPS)-stimulated RAW264.7 macrophages. The LPS-stimulated RAW264.7 macrophage cell line is a widely used in vitro cell model for the screening of anti-inflammatory drugs or the study of anti-inflammatory mechanisms. In this work, the inhibitory effects of dexamethasone and quercetin on LPS-CD14 receptor binding in RAW264.7 macrophages was probed by LPS-functionalized tips for the first time. Both dexamethasone and quercetin were found to inhibit LPS-induced NO production, iNOS expression, IκBα phosphorylation, and IKKα/β phosphorylation in RAW264.7 macrophages. The morphology and ultrastructure of RAW264.7 macrophages were determined by AFM, which indicated that dexamethasone and quercetin could inhibit LPS-induced cell surface particle size and roughness increase in RAW264.7 macrophages. The binding of LPS and its receptor in RAW264.7 macrophages was determined by LPS-functionalized AFM tips, which demonstrated that the binding force and binding probability between LPS and CD14 receptor on the surface of RAW264.7 macrophages were also inhibited by dexamethasone or quercetin treatment. The obtained results imply that AFM, which is very useful for the investigation of potential targets for anti-inflammatory drugs on native macrophages and the enhancement of our understanding of the anti-inflammatory effects of drugs, is expected to be developed into a promising tool for the study of anti-inflammatory drugs.

  11. Atomic layer deposition on polymer based flexible packaging materials: Growth characteristics and diffusion barrier properties

    Energy Technology Data Exchange (ETDEWEB)

    Kaeaeriaeinen, Tommi O., E-mail: tommi.kaariainen@lut.f [ASTRaL, Lappeenranta University of Technology, Prikaatinkatu 3 E, 50100 Mikkeli (Finland); Maydannik, Philipp, E-mail: philipp.maydannik@lut.f [ASTRaL, Lappeenranta University of Technology, Prikaatinkatu 3 E, 50100 Mikkeli (Finland); Cameron, David C., E-mail: david.cameron@lut.f [ASTRaL, Lappeenranta University of Technology, Prikaatinkatu 3 E, 50100 Mikkeli (Finland); Lahtinen, Kimmo, E-mail: kimmo.lahtinen@tut.f [Tampere University of Technology, Paper Converting and Packaging Technology, P.O. Box 541, 33101 Tampere (Finland); Johansson, Petri, E-mail: petri.johansson@tut.f [Tampere University of Technology, Paper Converting and Packaging Technology, P.O. Box 541, 33101 Tampere (Finland); Kuusipalo, Jurkka, E-mail: jurkka.kuusipalo@tut.f [Tampere University of Technology, Paper Converting and Packaging Technology, P.O. Box 541, 33101 Tampere (Finland)

    2011-03-01

    One of the most promising areas for the industrial application of atomic layer deposition (ALD) is for gas barrier layers on polymers. In this work, a packaging material system with improved diffusion barrier properties has been developed and studied by applying ALD on flexible polymer based packaging materials. Nanometer scale metal oxide films have been applied to polymer-coated papers and their diffusion barrier properties have been studied by means of water vapor and oxygen transmission rates. The materials for the study were constructed in two stages: the paper was firstly extrusion coated with polymer film, which was then followed by the ALD deposition of oxide layer. The polymers used as extrusion coatings were polypropylene, low and high density polyethylene, polylactide and polyethylene terephthalate. Water vapor transmission rates (WVTRs) were measured according to method SCAN-P 22:68 and oxygen transmission rates (O{sub 2}TRs) according to a standard ASTM D 3985. According to the results a 10 nm oxide layer already decreased the oxygen transmission by a factor of 10 compared to uncoated material. WVTR with 40 nm ALD layer was better than the level currently required for most common dry flexible packaging applications. When the oxide layer thickness was increased to 100 nm and above, the measured WVTRs were limited by the measurement set up. Using an ALD layer allowed the polymer thickness on flexible packaging materials to be reduced. Once the ALD layer was 40 nm thick, WVTRs and O{sub 2}TRs were no longer dependent on polymer layer thickness. Thus, nanometer scale ALD oxide layers have shown their feasibility as high quality diffusion barriers on flexible packaging materials.

  12. A Systematic Methodology for Uncertainty Analysis of Group Contribution Based and Atom Connectivity Index Based Models for Estimation of Properties of Pure Components

    DEFF Research Database (Denmark)

    Hukkerikar, Amol; Sarup, Bent; Sin, Gürkan

    concentration. The application of the developed methodology is highlighted through a set of molecules not used in the parameter estimation step. The developed methodology can be used to assist uncertainty and sensitivity analysis of product/process design to obtain rationally the risk/ safety factors...... and atomic connectivity index method) has been employed to create the missing groups and predict their contributions through the regressed contributions of connectivity indices. The objective of this work is to develop a systematic methodology to carry out uncertainty analysis of group contribution based...... and atom connectivity index based property prediction models. This includes: (i) parameter estimation using available MG based property prediction models and large training sets to determine improved group and atom contributions; and (ii) uncertainty analysis to establish statistical information...

  13. Adhesion of resin-based sealers to dentine: an atomic force microscopy study.

    Science.gov (United States)

    do Prado, M; de Assis, D F; Gomes, B P F A; Simão, R A

    2014-11-01

    To evaluate the effect of several final irrigants on the adhesion force (Fad) between dentine and resin-based sealers by means of atomic force microscopy (AFM). Twelve distal roots of mandibular molars were used. The roots were smoothened and cut to obtain 36 specimens. During chemomechanical preparation of the root canals, 5.25% NaOCl was used as the irrigant. The specimens were then divided into six groups according to the final irrigant used: control group - immersed in distilled water (DW) for 1 min; chlorhexidine (CHX) group - in 2% CHX for 1 min; NaOCl group - in 5.25% NaOCl for 1 min; EDTA group - in 17% EDTA for 5 min, EDTA/CHX group - in EDTA, followed by intermediate flushing with DW and then immersed in CHX; EDTA/NaOCl group - in EDTA, followed by intermediate flushing with DW and then immersed in NaOCl. After the treatments, all groups were washed with DW to remove all traces of the irrigants. Afterwards, the samples were dried and attached to a glass base. AFM tips containing AH Plus and Real Seal SE sealers were used to obtain force-distance curves with regard to dentine-treated surfaces. Data were analysed statistically using nonparametric tests with the significance level set at P < 0.05. In the groups with smear layer, a final flush with CHX and NaOCl resulted in significantly higher Fad values than the control group for both sealers (P < 0.001). When smear layer was removed, the highest Fad values associated with AH Plus occurred with a final flush of NaOCl, whilst in Real Seal SE, the highest values were found with a final flush of CHX (all results significant at P < 0.001). Irrigants had a positive effect on the adhesion of the resin-based sealers, AH Plus and Real Seal SE, to dentine. © 2014 International Endodontic Journal. Published by John Wiley & Sons Ltd.

  14. Nanomechanical assessment of human and murine collagen fibrils via atomic force microscopy cantilever-based nanoindentation.

    Science.gov (United States)

    Andriotis, Orestis G; Manuyakorn, Wiparat; Zekonyte, Jurgita; Katsamenis, Orestis L; Fabri, Sebastien; Howarth, Peter H; Davies, Donna E; Thurner, Philipp J

    2014-11-01

    The nanomechanical assessment of collagen fibrils via atomic force microscopy (AFM) is of increasing interest within the biomedical research community. In contrast to conventional nanoindentation there exists no common standard for conducting experiments and analysis of data. Currently used analysis approaches vary between studies and validation of quantitative results is usually not performed, which makes comparison of data from different studies difficult. Also there are no recommendations with regards to the maximum indentation depth that should not be exceeded to avoid substrate effects. Here we present a methodology and analysis approach for AFM cantilever-based nanoindentation experiments that allows efficient use of captured data and relying on a reference sample for determination of tip shape. Further we show experimental evidence that maximum indentation depth on collagen fibrils should be lower than 10-15% of the height of the fibril to avoid substrate effects and we show comparisons between our and other approaches used in previous works. While our analysis approach yields similar values for indentation modulus compared to the Oliver-Pharr method we found that Hertzian analysis yielded significantly lower values. Applying our approach we successfully and efficiently indented collagen fibrils from human bronchi, which were about 30 nm in size, considerably smaller compared to collagen fibrils obtained from murine tail-tendon. In addition, derived mechanical parameters of collagen fibrils are in agreement with data previously published. To establish a quantitative validation we compared indentation results from conventional and AFM cantilever-based nanoindentation on polymeric samples with known mechanical properties. Importantly we can show that our approach yields similar results when compared to conventional nanoindentation on polymer samples. Introducing an approach that is reliable, efficient and taking into account the AFM tip shape, we anticipate

  15. 4D Flexible Atom-Pairs: An efficient probabilistic conformational space comparison for ligand-based virtual screening

    Science.gov (United States)

    2011-01-01

    Background The performance of 3D-based virtual screening similarity functions is affected by the applied conformations of compounds. Therefore, the results of 3D approaches are often less robust than 2D approaches. The application of 3D methods on multiple conformer data sets normally reduces this weakness, but entails a significant computational overhead. Therefore, we developed a special conformational space encoding by means of Gaussian mixture models and a similarity function that operates on these models. The application of a model-based encoding allows an efficient comparison of the conformational space of compounds. Results Comparisons of our 4D flexible atom-pair approach with over 15 state-of-the-art 2D- and 3D-based virtual screening similarity functions on the 40 data sets of the Directory of Useful Decoys show a robust performance of our approach. Even 3D-based approaches that operate on multiple conformers yield inferior results. The 4D flexible atom-pair method achieves an averaged AUC value of 0.78 on the filtered Directory of Useful Decoys data sets. The best 2D- and 3D-based approaches of this study yield an AUC value of 0.74 and 0.72, respectively. As a result, the 4D flexible atom-pair approach achieves an average rank of 1.25 with respect to 15 other state-of-the-art similarity functions and four different evaluation metrics. Conclusions Our 4D method yields a robust performance on 40 pharmaceutically relevant targets. The conformational space encoding enables an efficient comparison of the conformational space. Therefore, the weakness of the 3D-based approaches on single conformations is circumvented. With over 100,000 similarity calculations on a single desktop CPU, the utilization of the 4D flexible atom-pair in real-world applications is feasible. PMID:21733172

  16. 4D Flexible Atom-Pairs: An efficient probabilistic conformational space comparison for ligand-based virtual screening

    Directory of Open Access Journals (Sweden)

    Jahn Andreas

    2011-07-01

    Full Text Available Abstract Background The performance of 3D-based virtual screening similarity functions is affected by the applied conformations of compounds. Therefore, the results of 3D approaches are often less robust than 2D approaches. The application of 3D methods on multiple conformer data sets normally reduces this weakness, but entails a significant computational overhead. Therefore, we developed a special conformational space encoding by means of Gaussian mixture models and a similarity function that operates on these models. The application of a model-based encoding allows an efficient comparison of the conformational space of compounds. Results Comparisons of our 4D flexible atom-pair approach with over 15 state-of-the-art 2D- and 3D-based virtual screening similarity functions on the 40 data sets of the Directory of Useful Decoys show a robust performance of our approach. Even 3D-based approaches that operate on multiple conformers yield inferior results. The 4D flexible atom-pair method achieves an averaged AUC value of 0.78 on the filtered Directory of Useful Decoys data sets. The best 2D- and 3D-based approaches of this study yield an AUC value of 0.74 and 0.72, respectively. As a result, the 4D flexible atom-pair approach achieves an average rank of 1.25 with respect to 15 other state-of-the-art similarity functions and four different evaluation metrics. Conclusions Our 4D method yields a robust performance on 40 pharmaceutically relevant targets. The conformational space encoding enables an efficient comparison of the conformational space. Therefore, the weakness of the 3D-based approaches on single conformations is circumvented. With over 100,000 similarity calculations on a single desktop CPU, the utilization of the 4D flexible atom-pair in real-world applications is feasible.

  17. Technology for On-Chip Qubit Control with Microfabricated Surface Ion Traps

    Energy Technology Data Exchange (ETDEWEB)

    Highstrete, Clark [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States). Quantum Information Sciences Dept.; Scott, Sean Michael [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States). RF/Optoelectronics Dept.; Nordquist, Christopher D. [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States). RF/Optoelectronics Dept.; Sterk, Jonathan David [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States). Photonic Microsystem Technologies Dept.; Maunz, Peter Lukas Wilhelm [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States). Photonic Microsystem Technologies Dept.; Tigges, Christopher P. [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States). Photonic Microsystem Technologies Dept.; Blain, Matthew Glenn [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States). Photonic Microsystem Technologies Dept.; Heller, Edwin J. [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States). Microsystems Integration Dept.; Stevens, James E. [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States). MESAFab Operations 2 Dept.

    2013-11-01

    Trapped atomic ions are a leading physical system for quantum information processing. However, scalability and operational fidelity remain limiting technical issues often associated with optical qubit control. One promising approach is to develop on-chip microwave electronic control of ion qubits based on the atomic hyperfine interaction. This project developed expertise and capabilities at Sandia toward on-chip electronic qubit control in a scalable architecture. The project developed a foundation of laboratory capabilities, including trapping the 171Yb+ hyperfine ion qubit and developing an experimental microwave coherent control capability. Additionally, the project investigated the integration of microwave device elements with surface ion traps utilizing Sandia’s state-of-the-art MEMS microfabrication processing. This effort culminated in a device design for a multi-purpose ion trap experimental platform for investigating on-chip microwave qubit control, laying the groundwork for further funded R&D to develop on-chip microwave qubit control in an architecture that is suitable to engineering development.

  18. SU-E-T-108: Development of a Novel Clinical Neutron Dose Monitor for Proton Therapy Based On Twin TLD500 Chips in a Small PE Moderator

    Energy Technology Data Exchange (ETDEWEB)

    Hentschel, R; Mukherjee, B [Westdeutsches Protonentherapiezentrum Essen (WPE)gGmbH, Essen (Germany)

    2014-06-01

    Purpose: In proton therapy, it could be desirable to measure out-of-field fast neutron doses at critical locations near and outside the patient body. Methods: The working principle of a novel clinical neutron dose monitor is verified by MCNPX simulation. The device is based on a small PE moderator of just 5.5cm side length for easy handling covered with a thermal neutron suppression layer. In the simulation, a polystyrene phantom is bombarded with a standard proton beam. The secondary thermal neutron flux produced inside the moderator by the impinging fast neutrons from the treatment volume is estimated by pairs of α-Al2O3:C (TLD500) chips which are evaluated offline after the treatment either by TL or OSL methods. The first chip is wrapped with 0.5mm natural Gadolinium foil converting the thermal neutrons to gammas via (n,γ) reaction. The second chip is wrapped with a dummy material. The chip centers have a distance of 2cm from each other. Results: The simulation shows that the difference of gamma doses in the TLD500 chips is correlated to the mean fast neutron dose delivered to the moderator material. Different outer shielding materials have been studied. 0.5mm Cadmium shielding is preferred for cost reasons and convenience. Replacement of PE moderator material by other materials like lead or iron at any place is unfavorable. The spatial orientation of the moderator cube is uncritical. Using variance reduction techniques like splitting/Russian roulette, the TLD500 gamma dose simulation give positive differences up to distances of 0.5m from the treatment volume. Conclusion: Applicability and basic layout of a novel clinical neutron dose monitor are demonstrated. The monitor measures PE neutron doses at locations outside the patient body up to distances of 0.5m from the treatment volume. Tissue neutron doses may be calculated using neutron kerma factors.

  19. Remote System Update for System on Programmable Chip Based on Controller Area Network

    Directory of Open Access Journals (Sweden)

    Lei Zhou

    2017-06-01

    Full Text Available In some application domains, using a download cable to update the system on a programmable chip (SoPC is infeasible, which reduces the maintainability and flexibility of the system. Hence the remote system update (RSU scheme is being studied. In this scheme, the serial configuration (EPCS device involves a factory mode configuration image, which acts as the baseline, and an application mode configuration image, which is used for some specific functions. Specifically, a new application mode image is delivered through the controller area network (CAN with the improved application layer protocol. Besides, the data flow and data check for transmitting a new image are constructed to combine the transmission reliability with efficiency. The boot sequence copying hardware configuration code and software configuration code is analyzed, and the advanced boot loader is carried out to specify boot address of the application mode image manually. Experiments have demonstrated the feasibility of updating and running a new application mode image, as well as rolling back into the factory mode image when no application mode image is available. This scheme applies a single CAN bus, which makes the system easy to construct and suitable for the field distributed control system.

  20. The System Power Control Unit Based on the On-Chip Wireless Communication System

    Directory of Open Access Journals (Sweden)

    Tiefeng Li

    2013-01-01

    Full Text Available Currently, the on-chip wireless communication system (OWCS includes 2nd-generation (2G, 3rd-generation (3G, and long-term evolution (LTE communication subsystems. To improve the power consumption of OWCS, a typical architecture design of system power control unit (SPCU is given in this paper, which can not only make a 2G, a 3G, and an LTE subsystems enter sleep mode, but it can also wake them up from sleep mode via the interrupt. During the sleep mode period, either the real-time sleep timer or the global system for mobile (GSM communication sleep timer can be used individually to arouse the corresponding subsystem. Compared to previous sole voltage supplies on the OWCS, a 2G, a 3G, or an LTE subsystem can be independently configured with three different voltages and frequencies in normal work mode. In the meantime, the voltage supply monitor, which is an important part in the SPCU, can significantly guard the voltage of OWCS in real time. Finally, the SPCU may implement dynamic voltage and frequency scaling (DVFS for a 2G, a 3G, or an LTE subsystem, which is automatically accomplished by the hardware.

  1. Chip-based visual detection of microRNA using DNA-functionalized gold nanoparticles.

    Science.gov (United States)

    Wang, Ping; Zhao, Jianlong; Hu, Bin; Cheng, Zule; Bai, Yanan; Jin, Qinghui; Liu, Huiying; Mao, Hongju; Li, Sanqiang; Zhao, Jianlong

    2016-05-01

    In the present study, we developed a highly sensitive and convenient biosensor consisting of gold nanoparticle (AuNP) probes and a gene chip to detect microRNAs (miRNAs). Specific oligonucleotides were attached to the glass surface as capture probes for the target miRNAs, which were then detected via hybridization to the AuNP probes. The signal was amplified via the reduction of HAuCl4 by H2O2. The use of a single AuNP probe detected 10 pmol L(-1) of target miRNA. The recovery rate for miR-126 from fetal bovine serum was 81.5%-109.1%. The biosensor detection of miR-126 in total RNA extracted from lung cancer tissues was consistent with the quantitative PCR (qPCR) results. The use of two AuNP probes further improved the detection sensitivity such that even 1 fmol L(-1) of target miR-125a-5p was detectable. This assay takes less than 1 h to complete and the results can be observed by the naked eye. The platform simultaneously detected lung cancer related miR-126 and miR-125a-5p. Therefore, this low cost, rapid, and convenient technology could be used for ultrasensitive and robust visual miRNA detection.

  2. Chip-based in situ hybridization for identification of bacteria from the human microbiome.

    Energy Technology Data Exchange (ETDEWEB)

    Light, Yooli Kim; Meagher, Robert J.; Singh, Anup K.; Liu, Peng

    2010-11-01

    The emerging field of metagenomics seeks to assess the genetic diversity of complex mixed populations of bacteria, such as those found at different sites within the human body. A single person's mouth typically harbors up to 100 bacterial species, while surveys of many people have found more than 700 different species, of which {approx}50% have never been cultivated. In typical metagenomics studies, the cells themselves are destroyed in the process of gathering sequence information, and thus the connection between genotype and phenotype is lost. A great deal of sequence information may be generated, but it is impossible to assign any given sequence to a specific cell. We seek non-destructive, culture-independent means of gathering sequence information from selected individual cells from mixed populations. As a first step, we have developed a microfluidic device for concentrating and specifically labeling bacteria from a mixed population. Bacteria are electrophoretically concentrated against a photopolymerized membrane element, and then incubated with a specific fluorescent label, which can include antibodies as well as specific or non-specific nucleic acid stains. Unbound stain is washed away, and the labeled bacteria are released from the membrane. The stained cells can then be observed via epifluorescence microscopy, or counted via flow cytometry. We have tested our device with three representative bacteria from the human microbiome: E. coli (gut, Gram-negative), Lactobacillus acidophilus (mouth, Gram-positive), and Streptococcus mutans (mouth, Gram-positive), with results comparable to off-chip labeling techniques.

  3. Towards Chip-Based Salinity Measurements for Small Submersibles and Biologgers

    Directory of Open Access Journals (Sweden)

    Jonas Jonsson

    2013-01-01

    Full Text Available Water’s salinity plays an important role in the environment. It can be determined by measuring conductivity, temperature, and depth (CTD. The corresponding sensor systems are commonly large and cumbersome. Here, a 7.5 × 3.5 mm chip, containing microstructured CTD sensor elements, has been developed. On this, 1.5 mm2 gold finger electrodes are used to measure the impedance, and thereby the conductivity of water, in the MHz frequency range. Operation at these frequencies resulted in higher sensitivities than those at sub-MHz frequencies. Up to 14 kΩ per parts per thousand salt concentration was obtained repeatedly for freshwater concentrations. This was three orders of magnitude higher than that obtained for concentrations in and above the brackish range. A platinum electrode is used to determine a set ambient temperature with an accuracy of 0.005°C. Membranes with Nichrome strain gauges responded to a pressure change of 1 bar with a change in resistance of up to 0.21 Ω. A linear fit to data over 7 bars gave a sensitivity of 0.1185 Ω/bar with an R2 of 0.9964. This indicates that the described device can be used in size-limited applications, like miniaturized submersibles, or as a bio-logger on marine animals.

  4. The system power control unit based on the on-chip wireless communication system.

    Science.gov (United States)

    Li, Tiefeng; Ma, Caiwen; Li, WenHua

    2013-01-01

    Currently, the on-chip wireless communication system (OWCS) includes 2nd-generation (2G), 3rd-generation (3G), and long-term evolution (LTE) communication subsystems. To improve the power consumption of OWCS, a typical architecture design of system power control unit (SPCU) is given in this paper, which can not only make a 2G, a 3G, and an LTE subsystems enter sleep mode, but it can also wake them up from sleep mode via the interrupt. During the sleep mode period, either the real-time sleep timer or the global system for mobile (GSM) communication sleep timer can be used individually to arouse the corresponding subsystem. Compared to previous sole voltage supplies on the OWCS, a 2G, a 3G, or an LTE subsystem can be independently configured with three different voltages and frequencies in normal work mode. In the meantime, the voltage supply monitor, which is an important part in the SPCU, can significantly guard the voltage of OWCS in real time. Finally, the SPCU may implement dynamic voltage and frequency scaling (DVFS) for a 2G, a 3G, or an LTE subsystem, which is automatically accomplished by the hardware.

  5. System-on-Chip Environment: A SpecC-Based Framework for Heterogeneous MPSoC Design

    Directory of Open Access Journals (Sweden)

    Daniel D. Gajski

    2008-07-01

    Full Text Available The constantly growing complexity of embedded systems is a challenge that drives the development of novel design automation techniques. C-based system-level design addresses the complexity challenge by raising the level of abstraction and integrating the design processes for the heterogeneous system components. In this article, we present a comprehensive design framework, the system-on-chip environment (SCE which is based on the influential SpecC language and methodology. SCE implements a top-down system design flow based on a specify-explore-refine paradigm with support for heterogeneous target platforms consisting of custom hardware components, embedded software processors, dedicated IP blocks, and complex communication bus architectures. Starting from an abstract specification of the desired system, models at various levels of abstraction are automatically generated through successive step-wise refinement, resulting in a pin-and cycle-accurate system implementation. The seamless integration of automatic model generation, estimation, and verification tools enables rapid design space exploration and efficient MPSoC implementation. Using a large set of industrial-strength examples with a wide range of target architectures, our experimental results demonstrate the effectiveness of our framework and show significant productivity gains in design time.

  6. System-on-Chip Environment: A SpecC-Based Framework for Heterogeneous MPSoC Design

    Directory of Open Access Journals (Sweden)

    Dömer Rainer

    2008-01-01

    Full Text Available Abstract The constantly growing complexity of embedded systems is a challenge that drives the development of novel design automation techniques. C-based system-level design addresses the complexity challenge by raising the level of abstraction and integrating the design processes for the heterogeneous system components. In this article, we present a comprehensive design framework, the system-on-chip environment (SCE which is based on the influential SpecC language and methodology. SCE implements a top-down system design flow based on a specify-explore-refine paradigm with support for heterogeneous target platforms consisting of custom hardware components, embedded software processors, dedicated IP blocks, and complex communication bus architectures. Starting from an abstract specification of the desired system, models at various levels of abstraction are automatically generated through successive step-wise refinement, resulting in a pin-and cycle-accurate system implementation. The seamless integration of automatic model generation, estimation, and verification tools enables rapid design space exploration and efficient MPSoC implementation. Using a large set of industrial-strength examples with a wide range of target architectures, our experimental results demonstrate the effectiveness of our framework and show significant productivity gains in design time.

  7. Improved Laser Manipulation for On-chip Fabricated Microstructures Based on Solution Replacement and Its Application in Single Cell Analysis

    Directory of Open Access Journals (Sweden)

    Tao Yue

    2014-02-01

    Full Text Available In this paper, we present the fabrication and assembly of microstructures inside a microfluidic device based on a photocrosslinkable resin and optical tweezers. We also report a method of solution replacement inside the microfluidic channel in order to improve the manipulation performance and apply the assembled microstructures for single cell cultivation. By the illumination of patterned ultraviolet (UV through a microscope, microstructures of arbitrary shape were fabricated by the photocrosslinkable resin inside a microfluidic channel. Based on the microfluidic channel with both glass and polydimethylsiloxane (PDMS surfaces, immovable and movable microstructures were fabricated and manipulated. The microstructures were fabricated at the desired places and manipulated by the optical tweezers. A rotational microstructure including a microgear and a rotation axis was assembled and rotated in demonstrating this technique. The improved laser manipulation of microstructures was achieved based on the on-chip solution replacement method. The manipulation speed of the microstructures increased when the viscosity of the solvent decreased. The movement efficiency of the fabricated microstructures inside the lower viscosity solvent was evaluated and compared with those microstructures inside the former high viscosity solvent. A novel cell cage was fabricated and the cultivation of a single yeast cell (w303 was demonstrated in the cell cage, inside the microfluidic device.

  8. On-chip, high-sensitivity temperature sensors based on dye-doped solid-state polymer microring lasers

    Science.gov (United States)

    Wan, Lei; Chandrahalim, Hengky; Chen, Cong; Chen, Qiushu; Mei, Ting; Oki, Yuji; Nishimura, Naoya; Guo, L. Jay; Fan, Xudong

    2017-08-01

    We developed a chip-scale temperature sensor with a high sensitivity of 228.6 pm/°C based on a rhodamine 6G (R6G)-doped SU-8 whispering gallery mode microring laser. The optical mode was largely distributed in a polymer core layer with a 30 μm height that provided detection sensitivity, and the chemically robust fused-silica microring resonator host platform guaranteed its versatility for investigating different functional polymer materials with different refractive indices. As a proof of concept, a dye-doped hyperbranched polymer (TZ-001) microring laser-based temperature sensor was simultaneously developed on the same host wafer and characterized using a free-space optics measurement setup. Compared to TZ-001, the SU-8 polymer microring laser had a lower lasing threshold and a better photostability. The R6G-doped SU-8 polymer microring laser demonstrated greater adaptability as a high-performance temperature-sensing element. In addition to the sensitivity, the temperature resolutions for the laser-based sensors were also estimated to be 0.13 °C and 0.35 °C, respectively. The rapid and simple implementation of micrometer-sized temperature sensors that operate in the range of 31 - 43 °C enables their potential application in thermometry.

  9. Micromachined fountain pen as a tool for atomic force microscope-based nanoelectrochemical metal deposition

    NARCIS (Netherlands)

    Deladi, S.; Tas, Niels Roelof; Berenschot, Johan W.; de Boer, Meint J.; Krijnen, Gijsbertus J.M.; Elwenspoek, Michael Curt; de Boer, J.H.

    2005-01-01

    We present a device that enables nanoelectrochemical deposition using atomic force microscope. The micromachined fountain pen is a probe that consists of a fluidic reservoir, fluidic channels encapsulated in cantilevers and a pyramidal probe tip by which the fluid transfer to the sample surface

  10. T-Path Formula and Atomic Bases for Cluster Algebras of Type D

    Science.gov (United States)

    Gunawan, Emily; Musiker, Gregg

    2015-07-01

    We extend a T-path expansion formula for arcs on an unpunctured surface to the case of arcs on a once-punctured polygon and use this formula to give a combinatorial proof that cluster monomials form the atomic basis of a cluster algebra of type D.

  11. Determination of Trace Elements in Nickel Base Alloys by Atomic Absorption Spectrophotometry.

    Science.gov (United States)

    An investigation is described to ascertain whether or not atomic absorption spectrophotometry could be used to determine the concentration of trace ... elements such as silver (Ag), bismuth (Bi), cadmium (Cd), lead (Pb), phosphorus (P), and arsenic (As) in nickel alloys such as Udimet 500 without interference of other constituent elements. (Author)

  12. Low-temperature atomic layer deposition delivers more active and stable Pt-based catalysts

    NARCIS (Netherlands)

    Bui, H.V.; Grillo, F.; Kulkarni, S.S.; Bevaart, Ronald; Nguyên, V.T.; van der Linden, B.; Moulijn, J.A.; Makkee, M.; Kreutzer, M.T.; van Ommen, J.R.

    2017-01-01

    We tailored the size distribution of Pt nanoparticles (NPs) on graphene nanoplatelets at a given metal loading by using low-temperature atomic layer deposition carried out in a fluidized bed reactor operated at atmospheric pressure. The Pt NPs deposited at low temperature (100 °C) after 10 cycles

  13. Effective atomic numbers of some H-, C-, N-and O-based composite ...

    Indian Academy of Sciences (India)

    The differential incoherent scattering cross-sections of the composite materials of interest measured at these three angles in the same set-up and substituted in this expression would yield their effective atomic number at the three energies. Results obtained in this manner for bakelite, nylon, epoxy, teflon, perspex and some ...

  14. Initiating Heavy-atom Based Phasing by Multi-Dimensional Molecular Replacement

    DEFF Research Database (Denmark)

    Pedersen, Bjørn Panyella; Gourdon, Pontus; Liu, Xiangyu

    2014-01-01

    in the determination of a membrane protein structure, the CopA Cu+-ATPase, when other methods had failed to resolve the heavy atom substructure. MRPM is particularly suited for proteins undergoing large conformational changes where multiple search models should be generated, and it enables the identification of weak...

  15. Chain-Branching Control of the Atomic Structure of Alkanethiol-Based Gold–Sulfur Interfaces

    DEFF Research Database (Denmark)

    Wang, Yun; Chi, Qijin; Zhang, Jingdong

    2011-01-01

    Density functional theory structure calculations at 0 K and simulations at 300 K of observed high-resolution in situ scanning tunneling microscopy (STM) images reveal three different atomic-interface structures for the self-assembled monolayers (SAMs) of three isomeric butanethiols on Au(111...

  16. Initiating Heavy-atom Based Phasing by Multi-Dimensional Molecular Replacement

    DEFF Research Database (Denmark)

    Pedersen, Bjørn Panyella; Gourdon, Pontus Emanuel; Liu, Xiangyu

    2014-01-01

    in the determination of a membrane protein structure, the CopA Cu+-ATPase, when other methods had failed to resolve the heavy atom substructure. MRPM is particularly suited for proteins undergoing large conformational changes where multiple search models should be generated, and it enables the identification of weak...... but correct molecular replacement solutions with maximum contrast to prime experimental phasing efforts....

  17. Rydberg-atom based radio-frequency electrometry using frequency modulation spectroscopy in room temperature vapor cells.

    Science.gov (United States)

    Kumar, Santosh; Fan, Haoquan; Kübler, Harald; Jahangiri, Akbar J; Shaffer, James P

    2017-04-17

    Rydberg atom-based electrometry enables traceable electric field measurements with high sensitivity over a large frequency range, from gigahertz to terahertz. Such measurements are particularly useful for the calibration of radio frequency and terahertz devices, as well as other applications like near field imaging of electric fields. We utilize frequency modulated spectroscopy with active control of residual amplitude modulation to improve the signal to noise ratio of the optical readout of Rydberg atom-based radio frequency electrometry. Matched filtering of the signal is also implemented. Although we have reached similarly, high sensitivity with other read-out methods, frequency modulated spectroscopy is advantageous because it is well-suited for building a compact, portable sensor. In the current experiment, ∼3 µV cm-1 Hz-1/2 sensitivity is achieved and is found to be photon shot noise limited.

  18. Understanding the Atomic Scale Mechanisms that Control the Attainment of Ultralow Friction and Wear in Carbon-Based Materials

    Science.gov (United States)

    2016-01-16

    2015. 15. Invited. New Insights into Friction and Wear through In-Situ Nanotribology. Joint Symposium of the Surface Science Society of Japan and...and Carpick, R.W. Influence of Surface Passivation on the Friction and Wear Behavior of Ultrananocrystalline Diamond and Tetrahedral Amorphous Carbon...AFRL-AFOSR-JP-TR-2016-0053 Understanding the Atomic Scale Mechanism that controls the attainment of ultralow friction and wear in carbon based

  19. A new model based on group theory for correlating vibrational displacement vectors of attached atoms and shapes of the central atom otbitals in ABn(n=2-5 molecules

    Directory of Open Access Journals (Sweden)

    R. Tayebee

    2003-12-01

    Full Text Available   Stretching and bending normal vibrations of AB2(C2v, AB3(D3h, AB4(D4h, and AB5(D3h molecules are described by correlating the vibrational displacement vectors of the attached atoms with the standard representations of s, p and d atomic orbitals of the central atom in ABn(n=2-5 molecules. It is found that stretching and bending normal vibrations of simple molecules accord with probability density of hybrid orbitals of the central atom. So, stretching and bending normal vibrations can be determined based on the irreducible representations of each vibration, and symbols for the representations which are suggested by Muliken.

  20. StatSTEM: An efficient approach for accurate and precise model-based quantification of atomic resolution electron microscopy images

    Energy Technology Data Exchange (ETDEWEB)

    De Backer, A.; Bos, K.H.W. van den [Electron Microscopy for Materials Science (EMAT), University of Antwerp, Groenenborgerlaan 171, 2020 Antwerp (Belgium); Van den Broek, W. [AG Strukturforschung/Elektronenmikroskopie, Institut für Physik, Humboldt-Universität zu Berlin, Newtonstraße 15, 12489 Berlin (Germany); Sijbers, J. [iMinds-Vision Lab, University of Antwerp, Universiteitsplein 1, 2610 Wilrijk (Belgium); Van Aert, S., E-mail: sandra.vanaert@uantwerpen.be [Electron Microscopy for Materials Science (EMAT), University of Antwerp, Groenenborgerlaan 171, 2020 Antwerp (Belgium)

    2016-12-15

    An efficient model-based estimation algorithm is introduced to quantify the atomic column positions and intensities from atomic resolution (scanning) transmission electron microscopy ((S)TEM) images. This algorithm uses the least squares estimator on image segments containing individual columns fully accounting for overlap between neighbouring columns, enabling the analysis of a large field of view. For this algorithm, the accuracy and precision with which measurements for the atomic column positions and scattering cross-sections from annular dark field (ADF) STEM images can be estimated, has been investigated. The highest attainable precision is reached even for low dose images. Furthermore, the advantages of the model-based approach taking into account overlap between neighbouring columns are highlighted. This is done for the estimation of the distance between two neighbouring columns as a function of their distance and for the estimation of the scattering cross-section which is compared to the integrated intensity from a Voronoi cell. To provide end-users this well-established quantification method, a user friendly program, StatSTEM, is developed which is freely available under a GNU public license. - Highlights: • An efficient model-based method for quantitative electron microscopy is introduced. • Images are modelled as a superposition of 2D Gaussian peaks. • Overlap between neighbouring columns is taken into account. • Structure parameters can be obtained with the highest precision and accuracy. • StatSTEM, auser friendly program (GNU public license) is developed.

  1. Simultaneous Detection of Antibiotic Resistance Genes on Paper-Based Chip Using [Ru(phen)2dppz]2+Turn-on Fluorescence Probe.

    Science.gov (United States)

    Li, Bofan; Zhou, Xiaoming; Liu, Hongxing; Deng, Huaping; Huang, Ru; Xing, Da

    2018-02-07

    Antibiotic resistance, the ability of some bacteria to resist antibiotic drugs, has been a major global health burden due to the extensive use of antibiotic agents. Antibiotic resistance is encoded via particular genes; hence the specific detection of these genes is necessary for diagnosis and treatment of antibiotic resistant cases. Conventional methods for monitoring antibiotic resistance genes require the sample to be transported to a central laboratory for tedious and sophisticated tests, which is grueling and time-consuming. We developed a paper-based chip, integrated with loop-mediated isothermal amplification (LAMP) and the "light switch" molecule [Ru(phen) 2 dppz] 2+ , to conduct turn-on fluorescent detection of antibiotic resistance genes. In this assay, the amplification reagents can be embedded into test spots of the chip in advance, thus simplifying the detection procedure. [Ru(phen) 2 dppz] 2+ was applied to intercalate into amplicons for product analysis, enabling this assay to be operated in a wash-free format. The paper-based detection device exhibited a limit of detection (LOD) as few as 100 copies for antibiotic resistance genes. Meanwhile, it could detect antibiotic resistance genes from various bacteria. Noticeably, the approach can be applied to other genes besides antibiotic resistance genes by simply changing the LAMP primers. Therefore, this paper-based chip has the potential for point-of-care (POC) applications to detect various gene samples, especially in resource-limited conditions.

  2. Fullerene-Based Macro-Heterocycle Prepared through Selective Incorporation of Three N and Two O Atoms into C60.

    Science.gov (United States)

    Li, Yanbang; Zhang, Gaihong; Wang, Dian; Xu, Beidi; Xu, Dan; Lou, Ning; Gan, Liangbing

    2016-11-14

    A 14-membered heterocycle is created on the C 60 cage skeleton through a multistep procedure. Key steps involve repeated PCl 5 -induced hydroxylamino N-O bond cleavage leading to insertion of nitrogen atoms, and also piperidine-induced peroxo O-O bond cleavage leading to insertion of oxygen atoms. The hetero atoms form one pyrrole, two pyran, and one diazepine rings in conjunction with the C 60 skeleton carbon atoms. The fullerene-based macrocycle showed unique reactivities towards fluoride ion and copper salts. © 2016 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

  3. Least cost supply strategies for wood chips

    DEFF Research Database (Denmark)

    Möller, Bernd

    The abstract presents a study based on a geographical information system, which produce  cost-supply curves by location for forest woods chips in Denmark.......The abstract presents a study based on a geographical information system, which produce  cost-supply curves by location for forest woods chips in Denmark....

  4. Atomic-resolution measurements with a new tunable diode laser-based interferometer

    DEFF Research Database (Denmark)

    Silver, R.M.; Zou, H.; Gonda, S.

    2004-01-01

    We develop a new implementation of a Michelson interferometer designed to make measurements with an uncertainty of less than 20 pm. This new method uses a tunable diode laser as the light source, with the diode laser wavelength continuously tuned to fix the number of fringes in the measured optical...... path. The diode laser frequency is measured by beating against a reference laser. High-speed, accurate frequency measurements of the beat frequency signal enables the diode laser wavelength to be measured with nominally 20-pm accuracy for the measurements described. The new interferometer design...... is lightweight and is mounted directly on an ultra-high vacuum scanning tunneling microscope capable of atomic resolution. We report the simultaneous acquisition of an atomic resolution image, while the relative lateral displacement of the tip along the sample distance is measured with the new tunable diode...

  5. Localised quantum states of atomic and molecular particles physisorbed on carbon-based nanoparticles

    Czech Academy of Sciences Publication Activity Database

    Kaprálová-Žďánská, Petra Ruth; Trachta, Michal; Bludský, Ota; Špirko, Vladimír

    2014-01-01

    Roč. 141, č. 11 (2014), "114702-1"-"114702-10" ISSN 0021-9606 R&D Projects: GA ČR GAP205/11/0571; GA ČR GAP208/11/0436; GA ČR GAP208/10/0725 Institutional support: RVO:68378271 ; RVO:61388963 Keywords : periodic structure * carbon nanostructures * graphene * quantum mechanics * physisorbed Subject RIV: BG - Nuclear, Atomic and Molecular Physics, Colliders Impact factor: 2.952, year: 2014

  6. Relativistic multireference coupled-cluster theory based on a B -spline basis: Application to atomic francium

    Science.gov (United States)

    Tang, Yong-Bo; Lou, Bing-Qiong; Shi, Ting-Yun

    2017-08-01

    In this paper, we report the relativistic Fock space multireference coupled-cluster method for atomic structure calculations. We use the no-pair Dirac-Coulomb-Breit Hamiltonian, together with a finite B -spline basis set to expand the large and small components of the Dirac wave function. Our method is applied to calculate ionization energies, reduced matrix elements, lifetimes, and polarizabilities for many states of atomic francium. To evaluate uncertainties of our results and investigate the role of electron correlation effects, we carry out calculations using approximated models at different levels. The quality of our calculations is assessed by comparing with available experimental results, showing a good agreement. In addition, the tune-out wavelengths of the ground state in the range of 340-800 nm, the magic wavelengths for the transition 7 s -8 s in the range of 800-1500 nm and the transition 7 s -7 p in the range of 600-1500 nm are determined by evaluating the dynamic polarizabilities of the 7 s , 8 s , and 7 p states for a linearly polarized light. These tune-out and magic wavelengths may be useful for laser cooling and trapping of the Fr atom, and for related high-precision trapping measurements.

  7. A simple image based method for obtaining electron density and atomic number in dual energy CT

    Science.gov (United States)

    Szczykutowicz, Timothy P.; Qi, Zhihua; Chen, Guang-Hong

    2011-03-01

    The extraction of electron density and atomic number information in computed tomography is possible when image values can be sampled using two different effective energies. The foundation for this extraction lies in the ability to express the linear attenuation coefficient using two basis functions that are dependent on electron density and atomic number over the diagnostic energy range used in CT. Material basis functions separate images into clinically familiar quantities such as 'bone' images and 'soft tissue' images. Physically, all basis function choices represent the expression of the linear attenuation coefficient in terms of a photoelectric and a Compton scattering term. The purpose of this work is to develop a simple dual energy decomposition method that requires no a priori knowledge about the energy characteristics of the imaging system. It is shown that the weighted sum of two basis images yields an electron density image where the weights for each basis image are the electron density of that basis image's basis material. Using the electron density image, effective atomic number information can also be obtained. These methods are performed solely in the image domain and require no spectrum or detector energy response information as required by some other dual energy decomposition methods.

  8. Multiscale approach for the construction of equilibrated all-atom models of a poly(ethylene glycol)-based hydrogel

    Science.gov (United States)

    Li, Xianfeng; Murthy, N. Sanjeeva; Becker, Matthew L.; Latour, Robert A.

    2016-01-01

    A multiscale modeling approach is presented for the efficient construction of an equilibrated all-atom model of a cross-linked poly(ethylene glycol) (PEG)-based hydrogel using the all-atom polymer consistent force field (PCFF). The final equilibrated all-atom model was built with a systematic simulation toolset consisting of three consecutive parts: (1) building a global cross-linked PEG-chain network at experimentally determined cross-link density using an on-lattice Monte Carlo method based on the bond fluctuation model, (2) recovering the local molecular structure of the network by transitioning from the lattice model to an off-lattice coarse-grained (CG) model parameterized from PCFF, followed by equilibration using high performance molecular dynamics methods, and (3) recovering the atomistic structure of the network by reverse mapping from the equilibrated CG structure, hydrating the structure with explicitly represented water, followed by final equilibration using PCFF parameterization. The developed three-stage modeling approach has application to a wide range of other complex macromolecular hydrogel systems, including the integration of peptide, protein, and/or drug molecules as side-chains within the hydrogel network for the incorporation of bioactivity for tissue engineering, regenerative medicine, and drug delivery applications. PMID:27013229

  9. A neural network potential-energy surface for the water dimer based on environment-dependent atomic energies and charges

    Science.gov (United States)

    Morawietz, Tobias; Sharma, Vikas; Behler, Jörg

    2012-02-01

    Understanding the unique properties of water still represents a significant challenge for theory and experiment. Computer simulations by molecular dynamics require a reliable description of the atomic interactions, and in recent decades countless water potentials have been reported in the literature. Still, most of these potentials contain significant approximations, for instance a frozen internal structure of the individual water monomers. Artificial neural networks (NNs) offer a promising way for the construction of very accurate potential-energy surfaces taking all degrees of freedom explicitly into account. These potentials are based on electronic structure calculations for representative configurations, which are then interpolated to a continuous energy surface that can be evaluated many orders of magnitude faster. We present a full-dimensional NN potential for the water dimer as a first step towards the construction of a NN potential for liquid water. This many-body potential is based on environment-dependent atomic energy contributions, and long-range electrostatic interactions are incorporated employing environment-dependent atomic charges. We show that the potential and derived properties like vibrational frequencies are in excellent agreement with the underlying reference density-functional theory calculations.

  10. Characterization of nano-sized precipitates in a Mn-based lean maraging steel by atom probe tomography

    Energy Technology Data Exchange (ETDEWEB)

    Millan, J.; Ponge, D.; Raabe, D.; Choi, P.; Dmitrieva, O. [Max-Planck-Institut fuer Eisenforschung, Duesseldorf (Germany)

    2011-02-15

    We present atom probe tomography results of a precipitation-hardened Mn-based maraging steel (9 Mn, 1.9 Ni, 0.6 Mo, 1.1 Ti, 0.33 Al; in at.%). The alloy is characterized by the surprising effect that both, strength and total elongation increase upon aging. The material reveals a high ultimate tensile strength (UTS) up to 1 GPa and good ductility (total elongation (TE) of up to 15% in a tensile test) depending on aging conditions. We map the evolution of the precipitates after 450 C aging treatment using atom probe tomography in terms of chemical composition and size distribution. (Copyright copyright 2011 Wiley-VCH Verlag GmbH and Co. KGaA, Weinheim)

  11. Atomic-scale insight into the origin of pyridine inhibition of MoS2-based hydrotreating catalysts

    DEFF Research Database (Denmark)

    Temel, Burcin; Tuxen, Anders K.; Kibsgaard, Jakob

    2010-01-01

    Basic nitrogen-containing compounds such as pyridine are well known to be inhibitors of the hydrodesulfurization (HDS) reaction for the MoS2-based catalysts. From an interplay of scanning tunneling microscopy (STM) experiments and density functional theory (DFT) calculations, atomic-scale insight...... also at the edges. The calculated DFT energies and simulated STM images allowed us to conclude that these species are pyridinium ions located at the catalytically active brim sites. Furthermore, the DFT results for the vibrational modes of the adsorbed pyridinium species agree well with those observed...... in earlier IR experiments on high surface alumina-supported MoS2 catalyst. The adsorption sites appear to be very similar to the brim sites involved in hydrogenation reactions in HDS. Thus, the combined STM and DFT results provide new atomic-scale insight into the inhibition effect of basic N...

  12. Mapping of Proteomic Composition on the Surfaces of Bacillus spores by Atomic Force Microscopy-based Immunolabeling

    Energy Technology Data Exchange (ETDEWEB)

    Plomp, M; Malkin, A J

    2008-06-02

    Atomic force microscopy provides a unique capability to image high-resolution architecture and structural dynamics of pathogens (e.g. viruses, bacteria and bacterial spores) at near molecular resolution in native conditions. Further development of atomic force microscopy in order to enable the correlation of pathogen protein surface structures with specific gene products is essential to understand the mechanisms of the pathogen life cycle. We have applied an AFM-based immunolabeling technique for the proteomic mapping of macromolecular structures through the visualization of the binding of antibodies, conjugated with nanogold particles, to specific epitopes on Bacillus spore surfaces. This information is generated while simultaneously acquiring the surface morphology of the pathogen. The immunospecificity of this labeling method was established through the utilization of specific polyclonal and monoclonal antibodies that target spore coat and exosporium epitopes of Bacillus atrophaeus and Bacillus anthracis spores.

  13. Imaging method for downward-looking sparse linear array three-dimensional synthetic aperture radar based on reweighted atomic norm

    Science.gov (United States)

    Bao, Qian; Han, Kuoye; Lin, Yun; Zhang, Bingchen; Liu, Jianguo; Hong, Wen

    2016-01-01

    We propose an imaging algorithm for downward-looking sparse linear array three-dimensional synthetic aperture radar (DLSLA 3-D SAR) in the circumstance of cross-track sparse and nonuniform array configuration. Considering the off-grid effect and the resolution improvement, the algorithm combines pseudo-polar formatting algorithm, reweighed atomic norm minimization (RANM), and a parametric relaxation-based cyclic approach (RELAX) to improve the imaging performance with a reduced number of array antennas. RANM is employed in the cross-track imaging after pseudo-polar formatting the DLSLA 3-D SAR echo signal, then the reconstructed results are refined by RELAX. By taking advantage of the reweighted scheme, RANM can improve the resolution of the atomic norm minimization, and outperforms discretized compressive sensing schemes that suffer from off-grid effect. The simulated and real data experiments of DLSLA 3-D SAR verify the performance of the proposed algorithm.

  14. Mobile setup for synchrotron based in situ characterization during thermal and plasma-enhanced atomic layer deposition

    Science.gov (United States)

    Dendooven, Jolien; Solano, Eduardo; Minjauw, Matthias M.; Van de Kerckhove, Kevin; Coati, Alessandro; Fonda, Emiliano; Portale, Giuseppe; Garreau, Yves; Detavernier, Christophe

    2016-11-01

    We report the design of a mobile setup for synchrotron based in situ studies during atomic layer processing. The system was designed to facilitate in situ grazing incidence small angle x-ray scattering (GISAXS), x-ray fluorescence (XRF), and x-ray absorption spectroscopy measurements at synchrotron facilities. The setup consists of a compact high vacuum pump-type reactor for atomic layer deposition (ALD). The presence of a remote radio frequency plasma source enables in situ experiments during both thermal as well as plasma-enhanced ALD. The system has been successfully installed at different beam line end stations at the European Synchrotron Radiation Facility and SOLEIL synchrotrons. Examples are discussed of in situ GISAXS and XRF measurements during thermal and plasma-enhanced ALD growth of ruthenium from RuO4 (ToRuS™, Air Liquide) and H2 or H2 plasma, providing insights in the nucleation behavior of these processes.

  15. Al2O3 on WSe2 by ozone based atomic layer deposition: Nucleation and interface study

    Directory of Open Access Journals (Sweden)

    Angelica Azcatl

    2017-08-01

    Full Text Available In this work, the atomic layer deposition process using ozone and trimethylaluminum (TMA for the deposition of Al2O3 films on WSe2 was investigated. It was found that the ozone-based atomic layer deposition enhanced the nucleation of Al2O3 in comparison to the water/TMA process. In addition, the chemistry at the Al2O3/WSe2 interface and the surface morphology of the Al2O3 films exhibited a dependence on the deposition temperature. A non-covalent functionalizing effect of ozone on WSe2 at low deposition temperatures 30 °C was identified which prevented the formation of pinholes in the Al2O3 films. These findings aim to provide an approach to obtain high-quality gate dielectrics on WSe2 for two-dimensional transistor applications.

  16. Hardware and Software Co-design: An Architecture Proposal for a Network-on-Chip Switch based on Bufferless Data Flow

    Directory of Open Access Journals (Sweden)

    S. Ortega-Cisneros

    2014-02-01

    Full Text Available The use of on chip networks as interconnection media for systems implemented in FPGAs is limited by the amount of logical resources necessary to deploy the network in the target device, and the time necessary to adjust the network parameters to achieve the performance goal for the system. In this paper we present a switch architecture, with data flow control based on circuit switching and aimed for on-chip networks with a Spidergon topology, which seeks to reduce the area occupied without severely affecting the overall network performance. As a result, we obtained a switch that requires only 114 slices in its most economic version on a Virtex 4-device. We also provide a performance profile, obtained by subjecting a network formed by these switches to different synthetic workloads within a simulator. This simulator was developed as part of the design flow of the switch, and it proves to be an essential tool for the test and validation process.

  17. A rapid, low-cost, and microfluidic chip-based system for parallel identification of multiple pathogens related to clinical pneumonia.

    Science.gov (United States)

    Huang, Guoliang; Huang, Qin; Xie, Lan; Xiang, Guangxin; Wang, Lei; Xu, Hui; Ma, Li; Luo, Xianbo; Xin, Juan; Zhou, Xinying; Jin, Xiangyu; Zhang, Lei

    2017-07-25

    An air-insulated microfluidic chip was designed for the automatic centrifugal distribution of samples to 24-test cells, enabling the parallel identification of multiple clinical pneumonia-related pathogens in 1.45-μL reactions without cross-contamination in 45 min. A portable nucleic acid analyzer that integrates mechanical, confocal optical, electronic, and software functions was also developed to collect fluorescence data in a Ø3 mm imaging field near the optical diffraction limit for highly sensitive fluorescence detection of nucleic acid amplification in real time. This microfluidic chip-based portable nucleic acid analyzer could detect low abundance nucleic acids present at as few as 10 copies. In a blinded experiment, specific identification of Mycoplasma pneumoniae, Staphylococcus aureus, and methicillin-resistant S. aureus was achieved with 229 clinical patient sputum samples. The total coincidence rate of our system and traditional RT-PCR with an ABI 7500 was 99.56%. Four samples accounting for the 0.44% inconformity were retested by gene sequencing, revealing that our system reported the correct results. This novel microfluidic chip-based detection system is cost-effective, rapid, sensitive, specific, and has a relatively high throughput for parallel identification, which is especially suitable for resource-limited facilities/areas and point-of-care testing.

  18. Compact silicon-based optrode with integrated laser diode chips, SU-8 waveguides and platinum electrodes for optogenetic applications

    Science.gov (United States)

    Schwaerzle, M.; Paul, O.; Ruther, P.

    2017-06-01

    We report on a compact optrode, i.e. a MEMS-based, invasive, bidirectional neural interface allowing to control neural activity using light while neural signals are recorded nearby. The optrode consists of a silicon (Si) base carrying two pairs of bare laser diodes (LDs) emitting at 650 nm and of two 8 mm-long, 250 µm-wide and down to 50 µm-thick shanks extending from the base. Each LD is efficiently coupled to one of four 15 or 20 µm-wide and 13 µm-high SU-8 waveguides (WGs) running in pairs along the shanks. In addition, each shank comprises four 20 µm-diameter platinum electrodes for neural recording near the WG end facets. After encapsulation of the LDs with a Si cover chip blocking stray light and protecting the LDs from the harsh environment to which the probe is destined, the compact base measures only 4  ×  4  ×  0.43 mm3. The time averaged radiant emittance at the WG end facet is 96.9 mW mm-2 for an LD current of 35 mA at a duty cycle of 5%. The absolute electrode impedance at 1 kHz is 1.54  ±  0.06 MΩ. Using infrared thermography, the temperature increase of the probe during LD operation was determined to be about 1 K under neuroscientifically relevant operating conditions.

  19. Obstacle Recognition Based on Machine Learning for On-Chip LiDAR Sensors in a Cyber-Physical System

    Directory of Open Access Journals (Sweden)

    Fernando Castaño

    2017-09-01

    Full Text Available Collision avoidance is an important feature in advanced driver-assistance systems, aimed at providing correct, timely and reliable warnings before an imminent collision (with objects, vehicles, pedestrians, etc.. The obstacle recognition library is designed and implemented to address the design and evaluation of obstacle detection in a transportation cyber-physical system. The library is integrated into a co-simulation framework that is supported on the interaction between SCANeR software and Matlab/Simulink. From the best of the authors’ knowledge, two main contributions are reported in this paper. Firstly, the modelling and simulation of virtual on-chip light detection and ranging sensors in a cyber-physical system, for traffic scenarios, is presented. The cyber-physical system is designed and implemented in SCANeR. Secondly, three specific artificial intelligence-based methods for obstacle recognition libraries are also designed and applied using a sensory information database provided by SCANeR. The computational library has three methods for obstacle detection: a multi-layer perceptron neural network, a self-organization map and a support vector machine. Finally, a comparison among these methods under different weather conditions is presented, with very promising results in terms of accuracy. The best results are achieved using the multi-layer perceptron in sunny and foggy conditions, the support vector machine in rainy conditions and the self-organized map in snowy conditions.

  20. Antithyroid drug detection using an enzyme cascade blocking in a nanoparticle-based lab-on-a-chip system.

    Science.gov (United States)

    Kurbanoglu, Sevinc; Mayorga-Martinez, Carmen C; Medina-Sánchez, Mariana; Rivas, Lourdes; Ozkan, Sibel A; Merkoçi, Arben

    2015-05-15

    A methimazole (MT) biosensor based on a nanocomposite of magnetic nanoparticles (MNPs) functionalized with iridium oxide nanoparticles (IrOx NPs) and tyrosinase (Tyr) immobilized onto screen printed electrode (SPE) by using a permanent magnet is presented. This system is evaluated in batch mode via chelating copper at the active site of tyrosinase and in flow mode by thioquinone formation. The MT detection in flow mode is achieved using a hybrid polydimethylsiloxane/polyester amperometric lab-on-a-chip (LOC) microsystem with an integrated SPE. Both systems are very sensitive with low limit of detection (LOD): 0.006 μM and 0.004 μM for batch and flow modes, respectively. Nevertheless, the flow mode has advantages such as its reusability, automation, low sample volume (6 μL), and fast response (20 s). Optimization and validation parameters such as enzyme-substrate amount, flow rate, inhibition conditions, repeatability and reproducibility of the biosensor have been performed. The proposed methods have been applied in MT detection in spiked human serum and pharmaceutical dosage forms. Copyright © 2014 Elsevier B.V. All rights reserved.