WorldWideScience

Sample records for arthrobacter species collected

  1. Biosorption of Cr(VI)_ and Cr(III)_Arthrobacter species

    OpenAIRE

    Gelagutashvili, E.; Pataraia, E. Ginturi D.; Gurielidze, M.

    2011-01-01

    The biosorption of Cr(VI)_ and Cr(III)_ Arthrobacter species (Arthrobacter globiformis and Arthrobacter oxidas) was studied simultaneous application dialysis and atomic absorption analysis. Also biosorption of Cr(VI) in the presence of Zn(II) during growth of Arthrobacter species and Cr(III) in the presence of Mn(II) were discussed. Comparative Cr(VI)_ and Cr(III)_ Arthrobacter species shown, that Cr(III) was more effectively adsorbed by both bacterium than Cr(VI). The adsorption capacity is ...

  2. Isolation of Arthrobacter species from the phyllosphere and demonstration of their epiphytic fitness

    OpenAIRE

    Scheublin, T.R.; Leveau, J.H.J.

    2013-01-01

    Bacteria of the genus Arthrobacter are common inhabitants of the soil environment, but can also be recovered from leaf surfaces (the phyllosphere). Using enrichment cultures on 4-chlorophenol, we succeeded in specifically isolating Arthrobacter bacteria from ground cover vegetation in an apple orchard. Based on 16S rRNA gene sequencing, the isolates were found to belong to at least three different species of Arthrobacter. Compared to the model bacterial epiphyte Pantoea agglomerans, the Arthr...

  3. Biosorption of Cr(VI)_ and Cr(III)_Arthrobacter species

    CERN Document Server

    Gelagutashvili, E; Gurielidze, M

    2011-01-01

    The biosorption of Cr(VI)_ and Cr(III)_ Arthrobacter species (Arthrobacter globiformis and Arthrobacter oxidas) was studied simultaneous application dialysis and atomic absorption analysis. Also biosorption of Cr(VI) in the presence of Zn(II) during growth of Arthrobacter species and Cr(III) in the presence of Mn(II) were discussed. Comparative Cr(VI)_ and Cr(III)_ Arthrobacter species shown, that Cr(III) was more effectively adsorbed by both bacterium than Cr(VI). The adsorption capacity is the same for both the Chromium-Arthrobacter systems. The biosorption constants for Cr(III) is higher than for Cr(VI) 5.7-5.9- fold for both species. Comparative Freundlich biosorption characteristics Cr(VI) Arthrobacter species of living and dry cells shown, that capacity(n) is in both cases the same(1.25,1.35). Dry cells have larger biosorption constant for both species, than living cells. Biosorption characteristics (K) and (n) for A. oxidas are without Mn(II) and in the presence of Mn(II) 2.6 x 10-4 (K), 1.37 (n) and 2...

  4. Ability of Cyanobacteria and Arthrobacter Species to Remove Gold Ions from Solution

    CERN Document Server

    Gelagutashvili, E; Rcheulichvili, A; Tsakadze, K; Bagdavadze, N; Kuchava, N; Djandjalia, M

    2012-01-01

    The biosorption of Au(III) - Spirulina platensis and Au(III) - Arthrobacter species (Arthrobacter globiformis and Arthrobacter oxidas) were studied at simultaneous application of dialysis and atomic absorption analysis. Also biosorption of Au(III) - Spirulina platensis at various pH were discussed. Biosorption constants for Au-cyanobacteris Spirulina platensis at different pH, and for Arthrobacter oxidas and Arthrobacter globiformis at pH=7.1 are : 1. K=3.91 x 10-4 (Au- Arthrobacter oxidas 61B, pH=7.1) 2. K=14.17 x 10-4 . (Au- Arthrobacter globiformis 151B, pH=7.1). 3. K=2.07x10-4 (Au- Spirulina platensis, pH=7.1) 4. K= 4.87x10-4 (Au- Spirulina platensis, pH=6.2) 5. K=8.7x10-4 (Au- Spirulina platensis, pH=8.4)

  5. Bioavailability of Ag(I) with Arthrobacter oxidas and Arthrobacter globiformis

    CERN Document Server

    Gelagutashvili, E; Ginturi, E; Bagdavadze, N; Kuchava, N; Tsakadze, K; Janjalia, M

    2012-01-01

    The biosorption of Ag(I)_ Arthrobacter species (Arthrobacter globiformis 151B and Arthrobacter oxidas 61B) was studied at simultaneous application of dialysis and atomic absorption analysis. The biosorption constants and nature of interaction for Ag(I) -Arthrobacter oxidas and Ag(I) -Arthrobacter globiformis were determined. The biosorption constants for Ag(I)- -Arthrobacter globiformis and for Ag(I) -Arthrobacter oxidas equal to 65.0 x10-4 and 35.0 x10-4 respectively.

  6. Review of the taxonomy of the genus Arthrobacter, emendation of the genus Arthrobacter sensu lato, proposal to reclassify selected species of the genus Arthrobacter in the novel genera Glutamicibacter gen. nov., Paeniglutamicibacter gen. nov., Pseudoglutamicibacter gen. nov., Paenarthrobacter gen. nov. and Pseudarthrobacter gen. nov., and emended description of Arthrobacter roseus.

    Science.gov (United States)

    Busse, Hans-Jürgen

    2016-01-01

    In this paper, the taxonomy of the genus Arthrobacter is discussed, from its first description in 1947 to the present state. Emphasis is given to intrageneric phylogeny and chemotaxonomic characteristics, concentrating on quinone systems, peptidoglycan compositions and polar lipid profiles. Internal groups within the genus Arthrobacter indicated from homogeneous chemotaxonomic traits and corresponding to phylogenetic grouping and/or high 16S rRNA gene sequence similarities are highlighted. Furthermore, polar lipid profiles and quinone systems of selected species are shown, filling some gaps concerning these chemotaxonomic traits. Based on phylogenetic groupings, 16S rRNA gene sequence similarities and homogeneity in peptidoglycan types, quinone systems and polar lipid profiles, a description of the genus Arthrobacter sensu lato and an emended description of Arthrobacter roseus are provided. Furthermore, reclassifications of selected species of the genus Arthrobacter into novel genera are proposed, namely Glutamicibacter gen. nov. (nine species), Paeniglutamicibacter gen. nov. (six species), Pseudoglutamicibacter gen. nov. (two species), Paenarthrobacter gen. nov. (six species) and Pseudarthrobacter gen. nov. (ten species). PMID:26486726

  7. Biodegradation by an Arthrobacter Species of Hydrocarbons Partitioned into an Organic Solvent

    OpenAIRE

    Efroymson, Rebecca A.; Alexander, Martin

    1991-01-01

    An Arthrobacter strain mineralized naphthalene and n-hexadecane dissolved in 2,2,4,4,6,8,8-heptamethylnonane. The extent of mineralization increased with greater volumes of solvent. Measurements under aseptic conditions of the partitioning of naphthalene into the aqueous phase from the solid phase or from heptamethylnonane showed that the rates were rapid and did not limit mineralization. The rate of mineralization of hexadecane was rapid, although partitioning of the compound into aqueous so...

  8. Arthrobacter deserti sp. nov., isolated from a desert soil sample.

    Science.gov (United States)

    Hu, Qing-Wen; Chu, Xiao; Xiao, Min; Li, Chang-Tian; Yan, Zheng-Fei; Hozzein, Wael N; Kim, Chang-Jin; Zhi, Xiao-Yang; Li, Wen-Jun

    2016-05-01

    A Gram-stain-positive, non-motile, rod-shaped, catalase-positive and oxidase-negative bacterium, designated YIM CS25T, was isolated from a soil sample collected from Turpan desert in Xinjiang Uyghur Autonomous Region, north-western China. The isolate grew at 15-40 °C, at pH 6.0-8.0 and with 0-6 % (w/v) NaCl. The phylogenetic trees based on 16S rRNA gene sequences revealed that strain YIM CS25T belonged to the genus Arthrobacter and was closely related to Arthrobacter halodurans JSM 078085T (95.89 % similarity). The peptidoglycan type contained lysine, alanine and glutamic acid. The major whole-cell sugars were galactose, glucose and ribose. The isolate contained diphosphatidylglycerol, phosphatidylglycerol and phosphatidylinositol as the major polar lipids and MK-9 (H2) as the predominant menaquinone. The major cellular fatty acids were anteiso-C15 : 0, iso-C15 : 0, anteiso-C17 : 0, iso-C16 : 0 and anteiso-C17 : 1ω9c. The genomic DNA G+C content was 68.3 mol%. On the basis of phylogenetic, phenotypic and chemotaxonomic analysis, strain YIM CS25T is considered to represent a novel species of the genus Arthrobacter, for which the name Arthrobacter deserti sp. nov. is proposed. The type strain is YIM CS25T ( = KCTC 39544T = CGMCC 1.15091T). PMID:26908080

  9. Arthrobacter pokkalii sp nov, a Novel Plant Associated Actinobacterium with Plant Beneficial Properties, Isolated from Saline Tolerant Pokkali Rice, Kerala, India

    Science.gov (United States)

    Krishnan, Ramya; Menon, Rahul Ravikumar; Tanaka, Naoto; Busse, Hans-Jürgen; Krishnamurthi, Srinivasan; Rameshkumar, Natarajan

    2016-01-01

    A novel yellow colony-forming bacterium, strain P3B162T was isolated from the pokkali rice rhizosphere from Kerala, India, as part of a project study aimed at isolating plant growth beneficial rhizobacteria from saline tolerant pokkali rice and functionally evaluate their abilities to promote plant growth under saline conditions. The novel strain P3B162T possesses plant growth beneficial traits such as positive growth on 1-aminocyclopropane-1-carboxylic acid (ACC), production of indole acetic acid (IAA) and siderophore. In addition, it also showed important phenotypic characters such as ability to form biofilm and utilization of various components of plant root exudates (sugars, amino acids and organic acids), clearly indicating its lifestyle as a plant rhizosphere associated bacterium. Taxonomically, the novel strain P3B162T was affiliated to the genus Arthrobacter based on the collective results of phenotypic, genotypic and chemotaxonomic analyses. Moreover, molecular analysis using 16S rRNA gene showed Arthrobacter globiformis NBRC 12137T, Arthrobacter pascens DSM 20545T and Arthrobacter liuii DSXY973T as the closely related phylogenetic neighbours, showing more than 98% 16S rRNA similarity values, whereas the recA gene analysis displayed Arthrobacter liuii JCM 19864T as the nearest neighbour with 94.7% sequence similarity and only 91.7% to Arthrobacter globiformis LMG 3813T and 88.7% to Arthrobacter pascens LMG 16255T. However, the DNA-DNA hybridization values between strain P3B162T, Arthrobacter globiformis LMG 3813T, Arthrobacter pascens LMG 16255T and Arthrobacter liuii JCM 19864T was below 50%. In addition, the novel strain P3B162T can be distinguished from its closely related type strains by several phenotypic characters such as colony pigment, tolerance to NaCl, motility, reduction of nitrate, hydrolysis of DNA, acid from sucrose, cell wall sugars and cell wall peptidoglycan structure. In conclusion, the combined results of this study support the

  10. Arthrobacter pokkalii sp nov, a Novel Plant Associated Actinobacterium with Plant Beneficial Properties, Isolated from Saline Tolerant Pokkali Rice, Kerala, India.

    Science.gov (United States)

    Krishnan, Ramya; Menon, Rahul Ravikumar; Tanaka, Naoto; Busse, Hans-Jürgen; Krishnamurthi, Srinivasan; Rameshkumar, Natarajan

    2016-01-01

    A novel yellow colony-forming bacterium, strain P3B162T was isolated from the pokkali rice rhizosphere from Kerala, India, as part of a project study aimed at isolating plant growth beneficial rhizobacteria from saline tolerant pokkali rice and functionally evaluate their abilities to promote plant growth under saline conditions. The novel strain P3B162T possesses plant growth beneficial traits such as positive growth on 1-aminocyclopropane-1-carboxylic acid (ACC), production of indole acetic acid (IAA) and siderophore. In addition, it also showed important phenotypic characters such as ability to form biofilm and utilization of various components of plant root exudates (sugars, amino acids and organic acids), clearly indicating its lifestyle as a plant rhizosphere associated bacterium. Taxonomically, the novel strain P3B162T was affiliated to the genus Arthrobacter based on the collective results of phenotypic, genotypic and chemotaxonomic analyses. Moreover, molecular analysis using 16S rRNA gene showed Arthrobacter globiformis NBRC 12137T, Arthrobacter pascens DSM 20545T and Arthrobacter liuii DSXY973T as the closely related phylogenetic neighbours, showing more than 98% 16S rRNA similarity values, whereas the recA gene analysis displayed Arthrobacter liuii JCM 19864T as the nearest neighbour with 94.7% sequence similarity and only 91.7% to Arthrobacter globiformis LMG 3813T and 88.7% to Arthrobacter pascens LMG 16255T. However, the DNA-DNA hybridization values between strain P3B162T, Arthrobacter globiformis LMG 3813T, Arthrobacter pascens LMG 16255T and Arthrobacter liuii JCM 19864T was below 50%. In addition, the novel strain P3B162T can be distinguished from its closely related type strains by several phenotypic characters such as colony pigment, tolerance to NaCl, motility, reduction of nitrate, hydrolysis of DNA, acid from sucrose, cell wall sugars and cell wall peptidoglycan structure. In conclusion, the combined results of this study support the

  11. Collective behaviour across animal species

    OpenAIRE

    DeLellis, P.; G. Polverino; Ustuner, G.; Abaid, N.; Macri, S.; Bollt, E. M.; M. Porfiri

    2014-01-01

    We posit a new geometric perspective to define, detect, and classify inherent patterns of collective behaviour across a variety of animal species. We show that machine learning techniques, and specifically the isometric mapping algorithm, allow the identification and interpretation of different types of collective behaviour in five social animal species. These results offer a first glimpse at the transformative potential of machine learning for ethology, similar to its impact on robotics, whe...

  12. Collective behaviour across animal species

    Science.gov (United States)

    Delellis, Pietro; Polverino, Giovanni; Ustuner, Gozde; Abaid, Nicole; Macrì, Simone; Bollt, Erik M.; Porfiri, Maurizio

    2014-01-01

    We posit a new geometric perspective to define, detect, and classify inherent patterns of collective behaviour across a variety of animal species. We show that machine learning techniques, and specifically the isometric mapping algorithm, allow the identification and interpretation of different types of collective behaviour in five social animal species. These results offer a first glimpse at the transformative potential of machine learning for ethology, similar to its impact on robotics, where it enabled robots to recognize objects and navigate the environment.

  13. Trichoderma species collected from Iran

    Institute of Scientific and Technical Information of China (English)

    Doostmorad Zafari

    2004-01-01

    @@ In order to identify Trichoderma species isolated from Iran, Trichoderma selective media and malt extract agar (MEA) were used to isolate Trichoderma species from the soil samples. All the cultures were purified on 2% water agar by hyphal tip method prior to morphological examination.Morphological observations were carried out on the cultures grown on 2% MEA and oat meal agar at 20℃ under ambient laboratory conditions. Macroscopic features of colony and microscopic features of conidiophore, phialid and conidium including position of phialids on conidiophore and shape and size of phialids and conidia were studied and recorded 3-5 days after inoculation. Out of 36 tested isolates, using morphological features and molecular data obtained from ITS1, ITS2 and 5.8S regions fourteen species were identified as follow: T. atroviride, T. ghanense, T. spirale, T. erinaceum, T. citrinoviride, T. saturnisporum,T. longibrachiatum , T. hamatum , T. harzianum, T. inhamatum , T. tomentosum , T.virens, T. asperellum, T. koningii. Among the species T. harzianum and T. virens isolates were the most frequent species. In addition of the mentioned species two Tichoderma sp. were collected from walnut rhizospher that they are not fit to any described species so far. Although one of them are T. brevicumpactum introduced informally.

  14. Modeling species-abundance relationships in multi-species collections

    Science.gov (United States)

    Peng, S.; Yin, Z.; Ren, H.; Guo, Q.

    2003-01-01

    Species-abundance relationship is one of the most fundamental aspects of community ecology. Since Motomura first developed the geometric series model to describe the feature of community structure, ecologists have developed many other models to fit the species-abundance data in communities. These models can be classified into empirical and theoretical ones, including (1) statistical models, i.e., negative binomial distribution (and its extension), log-series distribution (and its extension), geometric distribution, lognormal distribution, Poisson-lognormal distribution, (2) niche models, i.e., geometric series, broken stick, overlapping niche, particulate niche, random assortment, dominance pre-emption, dominance decay, random fraction, weighted random fraction, composite niche, Zipf or Zipf-Mandelbrot model, and (3) dynamic models describing community dynamics and restrictive function of environment on community. These models have different characteristics and fit species-abundance data in various communities or collections. Among them, log-series distribution, lognormal distribution, geometric series, and broken stick model have been most widely used.

  15. Uptake of Glyphosate by an Arthrobacter sp

    OpenAIRE

    Pipke, Rüdiger; Schulz, Arno; Amrhein, Nikolaus

    1987-01-01

    The uptake of glyphosate (N-[phosphonomethyl]glycine) by an Arthrobacter sp. which can utilize this herbicide as its sole source of phosphorus was investigated. Orthophosphate suppressed the expression of the uptake system for glyphosate and also competed with glyphosate for uptake. The Km for glyphosate uptake was 125 μM, and the Ki for orthophosphate was 24 μM. Organophosphonates as well as organophosphates inhibited glyphosate uptake, but only organophosphates and orthophosphate suppressed...

  16. Inferring species decline from collection records

    DEFF Research Database (Denmark)

    Carpaneto, Giuseppe Maria; Mazziotta, Adriano; Valerio, Laura

    2007-01-01

    The decline of roller dung beetles (Coleoptera, Scarabaeidae) in Italy, at national and regional level, was described using a database of both literature and unpublished data, since the late of 19th century. The probability of finding roller species was assessed for each decade of the 20th century...... increased clearly as a consequence of the escalation of entomological surveys. Nevertheless, comparing R species (rollers) with all the scarab dung beetles from the first to the last quarter of the 20th century, the relative frequency of roller records decreased by 31%, while the relative number of occupied...... UTM cells dropped by 23%. Six roller species showed a significant decline in Italy from the first to the second part of the 20th century, and nine in the last 30years. Other two species disappeared from the majority of the northern regions. Finally, the values of all the extinction indexes were...

  17. Inferring species decline from collection records

    DEFF Research Database (Denmark)

    Carpaneto, Giuseppe Maria; Mazziotta, Adriano; Valerio, Laura

    2007-01-01

    The decline of roller dung beetles (Coleoptera, Scarabaeidae) in Italy, at national and regional level, was described using a database of both literature and unpublished data, since the late of 19th century. The probability of finding roller species was assessed for each decade of the 20th century...

  18. Agaritine content of 53 Agaricus species collected from nature

    DEFF Research Database (Denmark)

    Schulzova, V.; Hajslova, J.; Peroutka, R.;

    2009-01-01

    carcinogen. There was a huge variation in agaritine content between species, but less variation between samples of a species. Whereas the cultivated mushroom Agaricus bisporus commonly contain 200-500 mg agaritine kg-1 fresh weight, no less than 24 of the 53 species contained agaritine levels above 1000 mg...... strain development of Agaricus mushrooms for cultivation. No correlation could be observed between agaritine content and size of the mushroom, week of the year when collected, year of collection, or site of collection. Besides occurring in the genus Agaricus, some species of the genera Leucoagaricus...

  19. Biodegradation of α-, β-, and γ-hexachlorocyclohexane by Arthrobacter fluorescens and Arthrobacter giacomelloi.

    Science.gov (United States)

    De Paolis, M R; Lippi, D; Guerriero, E; Polcaro, C M; Donati, E

    2013-06-01

    The organochlorine pesticide γ-hexachlorocyclohexane (γ-HCH, lindane) and its non-insecticidal isomers α-, β-, and δ- continue to pose serious environmental and health concerns, although their use has been restricted or completely banned for decades. The present study reports the first results on the ability of two Arthrobacter strains, not directly isolated from a HCH-polluted site, to grow in a mineral salt medium containing α-, β-, or γ-HCH (100 mgl(-1)) as sole source of carbon. Growth of cultures and HCHs degradation by Arthrobacter fluorescens and Arthrobacter giacomelloi were investigated after 1, 2, 3, 4, and 7 days of incubation by enumerating colony forming units and GC with ECD detection, respectively. Both bacteria are able to metabolize the HCHs: A. giacomelloi is the most effective one, as after 72 h of incubation it produces 88 % degradation of α-, 60 % of β-, and 56 % of γ-HCH. The formation of possible persistent compounds was studied by GC/MS and by HPLC analysis. Pentachlorocyclohexenes and tetrachlorocyclohexenes have been detected as metabolites, which are almost completely eliminated after 72 h of incubation, while no phenolic compounds were found. PMID:23553101

  20. Erythema caused by a localised skin infection with Arthrobacter mysorens

    Directory of Open Access Journals (Sweden)

    Chakraborty Trinad

    2010-12-01

    Full Text Available Abstract Background Skin erythemas of unknown origin are a frequent reason for consulting the general practitioner or dermatologist. Case presentation Here we report a case of an erythema resembling the erythema migrans manifestation of Lyme disease, but with atypical symptoms like persistent pruritus. The patient had no history of a recent tick-bite but displayed a positive serology for an advanced stage of Lyme borreliosis, which stood in contrast to the clinical manifestation of erythema migrans as a symptom of early Lyme disease. Three skin swabs and soil samples, collected in the area where the patient possibly acquired the infection, were examined by bacterial and fungal culture methods. Microorganisms were identified by using 16 S rRNA gene sequencing and bioinformatics. The patient and soil isolates were compared by employing RAPD analysis. The serum samples of the patient were examined by immunoblotting. Arthrobacter mysorens, a soil bacterium, was isolated from the collected skin and soil samples. The identity of both isolates was determined by molecular fingerprinting methods. A. mysorens was proven to be causative for the erythema by direct isolation from the affected skin and a positive serology, thus explaining the atypical appearance of the erythema compared to erythema migrans caused by Borrelia infection. Conclusions Infections with A.mysorens might be underreported and microbiological diagnostic techniques should be applied in cases of patients with unclear erythemas, resembling erythema migrans, without a history of tick bites.

  1. Wild Collection and Cultivation of Native Species in Iceland

    OpenAIRE

    Whitney, Cory; Gebauer, Jens; Anderson, Molly

    2014-01-01

    Based on an MSc thesis submitted to the joint Master program between University of Kassel and University of Goettingen and later published: WHITNEY C.W., GEBAUER J. & ANDERSON M. 2012. A Survey of Wild Collection and Cultivation of Indigenous Species in Iceland. Human Ecology. This paper outlines a survey of Icelanders who use local plants. Some of the species (e.g. Angelica spp. and Betula spp.) were very important. However, great potential exists for a more diverse harvest and for sust...

  2. Molecular characterization of some lignicolous species from fungal culture collection

    Directory of Open Access Journals (Sweden)

    Stević Nevena

    2014-01-01

    Full Text Available Culture collections of microorganisms, including fungi, are strain deposits recognised as Biological Resource Centers (BRCs with a great importance in science, industry and education. Their objective is to preserve the purity, viability and genomic integrity of every single strain as a member of such collection. Since improvement of molecular methods nowadays brought many novel approaches in manipulation with strains of microorganisms, they can also be useful for characterization of existing stored strains. ITS1 region in nuclear DNA is preferred barcoding marker for taxon identification, which can be explained by its great inter-species variability. This paper presents results from analysing ITS1 region sequences (17 obtained from fungal DNA of culture collection of autochthonous, lignicolous genera Piptoporus, Pleurotus, Ganoderma and Schizophyllum cultured on malt agar plates for 14 days at 25°C. BLAST (Basic Local Alignment Search Tool was used for comparison with online databases, while alignment of sequences was made with MEGA 5.10 software. Morphological determination of species or genus was confirmed for 13 cultures, while the others were disproved. The resulting alignment indicated small intra-species variability of ITS1 region and pointed to it as an ideal marker for verification of fungal culture collections' authenticity. [Projekat Ministarstva nauke Republike Srbije, br. III43002 and by the Provincial Secretariat for Science and Technological Development, Vojvodina, Serbia APV 114-4513592/2013-03: Molecular and phenotypic diversity of taxa of economical and epidemiological importance, and endangered and endemic species in Europe

  3. Improving Remote Species Identification through Efficient Training Data Collection

    Directory of Open Access Journals (Sweden)

    Claire A. Baldeck

    2014-03-01

    Full Text Available Plant species identification and mapping based on remotely-sensed spectral signatures is a challenging task with the potential to contribute enormously to ecological studies. Success in this task rests upon the appropriate collection and use of costly field-based training data, and researchers are in need of ways to improve collection efficiency based on quantitative evidence. Using imaging spectrometer data collected by the Carnegie Airborne Observatory for hundreds of field-identified tree crowns in Kruger National Park, South Africa, we developed woody plant species classification models and evaluated how classification accuracy increases with increasing numbers of training crowns. First, we show that classification accuracy must be estimated while respecting the crown as the basic unit of data; otherwise, accuracy will be overestimated and the amount of training data needed to perform successful classification will be underestimated. We found that classification accuracy and the number of training crowns needed to perform successful classification varied depending on the number and spectral separability of species in the model. We also used a modified Michaelis-Menten function to describe the empirical relationship between training crowns and model accuracy, and show how this function may be useful for predicting accuracy. This framework can assist researchers in designing field campaigns to maximize the efficiency of field data collection, and thus the amount of biodiversity information gained from remote species identification models.

  4. Sequence variation of Pleurotus species collected from Eastern Asia

    Directory of Open Access Journals (Sweden)

    A. Imtiaj

    2011-01-01

    Full Text Available The systematic and genetic relationship among different species of Pleurotus mushrooms is still unclear. Because of that, 20 strains of Pleurotus spp. collected from differing regions, such as Korea (P. djamor, P. eryngii, P. ostreatus, P. pulmonarius, China (P. cornucopiae, P. eryngii, P. ferulae, P. nebrodensis, P. ostreatus, and Taiwan (P. cornucopiae, P. cystidiosus, P. ostreatus were used to study their genetic make-up. In this study, we used DNA sequences of the ITS (Internal Transcribed Spacer region to analyze the genetic diversity of Pleurotus strains. A few differences were found in the sequences implying that all strains belonged to Pleurotus regardless of the geographical origin and species. This is also supported by phylogenetic analysis, which revealed that Pleurotus strains collected from different environments have a little genetic variation in case of differing species. Some strains belonging to the same species showed 100% similarities, even those collected from different regions, suggesting that strains studied might be distributed from a common ancestor.

  5. Cloning and sequencing of the trpE gene from Arthrobacter globiformis ATCC 8010 and several related subsurface Arthrobacter isolates

    Energy Technology Data Exchange (ETDEWEB)

    Chernova, T.; Viswanathan, V.K.; Austria, N.; Nichols, B.P.

    1998-09-01

    Tryptophan dependent mutants of Arthrobacter globiformis ATCC 8010 were isolated and trp genes were cloned by complementation and marker rescue of the auxotrophic strains. Rescue studies and preliminary sequence analysis reveal that at least the genes trpE, trpC, and trpB are clustered together in this organism. In addition, sequence analysis of the entire trpE gene, which encodes component I of anthranilate synthase, is described. Segments of the trpE gene from 17 subsurface isolates of Arthrobacter sp. were amplified by PCR and sequenced. The partial trpE sequences from the various strains were aligned and subjected to phylogenetic analysis. The data suggest that in addition to single base changes, recombination and genetic exchange play a major role in the evolution of the Arthrobacter genome.

  6. Beta-galactosidase from psychrotrophic microorganism (strain arthrobacter)

    Czech Academy of Sciences Publication Activity Database

    Hašek, Jindřich; Skálová, Tereza; Petroková, Hana; Vondráčková-Buchtelová, Eva; Dohnálek, Jan; Spiwok, V.; Lipovová, P.; Strnad, H.; Králová, B.

    2004-01-01

    Roč. 11, č. 1 (2004), s. 18-19. ISSN 1211-5894 R&D Projects: GA ČR GA204/02/0843 Institutional research plan: CEZ:AV0Z4050913 Keywords : .beta.-galactoside * cold active enzymes * Arthrobacter Subject RIV: EB - Genetics ; Molecular Biology

  7. Copper toxicity to different field-collected cladoceran species: intra-and inter-species sensitivity

    International Nuclear Information System (INIS)

    The acute copper sensitivity of 44 European freshwater cladocerans, from four families (Daphniidae, Bosminidae, Macrothricidae, Chydoridae) and 13 genera (Daphnia, Ctenodaphnia, Ceriodaphnia, Simocephalus, Scapholeberis, Bosmina, Acantholeberis, Alona, Acroperus, Chydorus, Eurycercus, Disparalona and Pleuroxus) were assayed. The 48-h EC50s of field-collected organisms tested in reconstituted standard laboratory water ranged from 5.3 to 70.6 μg Cu L-1. Only among Ctenodaphnia were significant intra-species differences observed. Significant inter-species differences were noted among Alonina and Daphnia. Between all genera tested, a maximum of a 12-fold difference in copper sensitivity was noted. Most animals were more sensitive than a laboratory D. magna clone. A weak non-significant increasing trend was noted between mean cladoceran 48-h EC50 and ambient copper concentration of the different aquatic systems, suggesting acclimation/adaptation in the field. A positive relationship was also observed between the 48-h EC50 of the field-collected cladoceran species (without the Chydoridae family) and the size of the organisms. - Zooplankton living in natural waters are more sensitive to copper than laboratory animals

  8. Copper toxicity to different field-collected cladoceran species: intra-and inter-species sensitivity

    Energy Technology Data Exchange (ETDEWEB)

    Bossuyt, Bart T.A. [Laboratory of Environmental Toxicology and Aquatic Ecology, Ghent University, J. Plateaustraat 22, B-9000 Ghent (Belgium)]. E-mail: bart.bossuyt@ugent.be; Janssen, Colin R. [Laboratory of Environmental Toxicology and Aquatic Ecology, Ghent University, J. Plateaustraat 22, B-9000 Ghent (Belgium)

    2005-07-15

    The acute copper sensitivity of 44 European freshwater cladocerans, from four families (Daphniidae, Bosminidae, Macrothricidae, Chydoridae) and 13 genera (Daphnia, Ctenodaphnia, Ceriodaphnia, Simocephalus, Scapholeberis, Bosmina, Acantholeberis, Alona, Acroperus, Chydorus, Eurycercus, Disparalona and Pleuroxus) were assayed. The 48-h EC{sub 50}s of field-collected organisms tested in reconstituted standard laboratory water ranged from 5.3 to 70.6 {mu}g Cu L{sup -1}. Only among Ctenodaphnia were significant intra-species differences observed. Significant inter-species differences were noted among Alonina and Daphnia. Between all genera tested, a maximum of a 12-fold difference in copper sensitivity was noted. Most animals were more sensitive than a laboratory D. magna clone. A weak non-significant increasing trend was noted between mean cladoceran 48-h EC{sub 50} and ambient copper concentration of the different aquatic systems, suggesting acclimation/adaptation in the field. A positive relationship was also observed between the 48-h EC{sub 50} of the field-collected cladoceran species (without the Chydoridae family) and the size of the organisms. - Zooplankton living in natural waters are more sensitive to copper than laboratory animals.

  9. Wide Distribution of Closely Related, Antibiotic-Producing Arthrobacter Strains throughout the Arctic Ocean

    DEFF Research Database (Denmark)

    Wietz, Matthias; Månsson, Maria; Bowman, Jeff S.;

    2012-01-01

    We isolated 16 antibiotic-producing bacterial strains throughout the central Arctic Ocean, including seven Arthrobacter spp. with almost identical 16S rRNA gene sequences. These strains were numerically rare, as revealed using 454 pyrosequencing libraries. Arthrobacter spp. produced arthrobacilin...

  10. Draft Genome Sequence of Arthrobacter chlorophenolicus Strain Mor30.16, Isolated from the Bean Rhizosphere

    OpenAIRE

    Miranda-Ríos, José Antonio; Ramírez-Trujillo, José Augusto; Nova-Franco, Bárbara; Lozano-Aguirre Beltrán, Luis Fernando; Iturriaga, Gabriel; Suárez-Rodríguez, Ramón

    2015-01-01

    Bacteria of the genus Arthrobacter are commonly found in the soil and plant rhizosphere. In this study we report the draft genome of Arthrobacter chlorophenolicus strain Mor30.16 that was isolated from rhizosphere of beans grown in Cuernavaca Morelos, Mexico. This strain promotes growth and ameliorates drought stress in bean plants.

  11. Complete Genome Sequencing of Protease-Producing Novel Arthrobacter sp. Strain IHBB 11108 Using PacBio Single-Molecule Real-Time Sequencing Technology

    OpenAIRE

    Kiran, Shashi; Swarnkar, Mohit K.; Pal, Mohinder; Thakur, Rishu; Tewari, Rupinder; Singh, Anil Kumar; Gulati, Arvind

    2015-01-01

    A previously uncharacterized species of the genus Arthrobacter, strain IHBB 11108 (MCC 2780), is a Gram-positive, strictly aerobic, nonmotile, cold-adapted, and protease-producing alkaliphilic actinobacterium, isolated from shallow undersurface water from Chandra Tal Lake, Lahaul-Spiti, India. The complete genome of the strain is 3.6 Mb in size with an average 58.97% G+C content.

  12. Genome sequence of the fish pathogen Renibacterium salmoninarum suggests reductive evolution away from an environmental Arthrobacter ancestor.

    Science.gov (United States)

    Wiens, Gregory D; Rockey, Daniel D; Wu, Zaining; Chang, Jean; Levy, Ruth; Crane, Samuel; Chen, Donald S; Capri, Gina R; Burnett, Jeffrey R; Sudheesh, Ponnerassery S; Schipma, Matthew J; Burd, Henry; Bhattacharyya, Anamitra; Rhodes, Linda D; Kaul, Rajinder; Strom, Mark S

    2008-11-01

    Renibacterium salmoninarum is the causative agent of bacterial kidney disease and a significant threat to healthy and sustainable production of salmonid fish worldwide. This pathogen is difficult to culture in vitro, genetic manipulation is challenging, and current therapies and preventative strategies are only marginally effective in preventing disease. The complete genome of R. salmoninarum ATCC 33209 was sequenced and shown to be a 3,155,250-bp circular chromosome that is predicted to contain 3,507 open-reading frames (ORFs). A total of 80 copies of three different insertion sequence elements are interspersed throughout the genome. Approximately 21% of the predicted ORFs have been inactivated via frameshifts, point mutations, insertion sequences, and putative deletions. The R. salmoninarum genome has extended regions of synteny to the Arthrobacter sp. strain FB24 and Arthrobacter aurescens TC1 genomes, but it is approximately 1.9 Mb smaller than both Arthrobacter genomes and has a lower G+C content, suggesting that significant genome reduction has occurred since divergence from the last common ancestor. A limited set of putative virulence factors appear to have been acquired via horizontal transmission after divergence of the species; these factors include capsular polysaccharides, heme sequestration molecules, and the major secreted cell surface antigen p57 (also known as major soluble antigen). Examination of the genome revealed a number of ORFs homologous to antibiotic resistance genes, including genes encoding beta-lactamases, efflux proteins, macrolide glycosyltransferases, and rRNA methyltransferases. The genome sequence provides new insights into R. salmoninarum evolution and may facilitate identification of chemotherapeutic targets and vaccine candidates that can be used for prevention and treatment of infections in cultured salmonids. PMID:18723615

  13. Genome Sequence of the Fish Pathogen Renibacterium salmoninarum Suggests Reductive Evolution away from an Environmental Arthrobacter Ancestor▿ †

    Science.gov (United States)

    Wiens, Gregory D.; Rockey, Daniel D.; Wu, Zaining; Chang, Jean; Levy, Ruth; Crane, Samuel; Chen, Donald S.; Capri, Gina R.; Burnett, Jeffrey R.; Sudheesh, Ponnerassery S.; Schipma, Matthew J.; Burd, Henry; Bhattacharyya, Anamitra; Rhodes, Linda D.; Kaul, Rajinder; Strom, Mark S.

    2008-01-01

    Renibacterium salmoninarum is the causative agent of bacterial kidney disease and a significant threat to healthy and sustainable production of salmonid fish worldwide. This pathogen is difficult to culture in vitro, genetic manipulation is challenging, and current therapies and preventative strategies are only marginally effective in preventing disease. The complete genome of R. salmoninarum ATCC 33209 was sequenced and shown to be a 3,155,250-bp circular chromosome that is predicted to contain 3,507 open-reading frames (ORFs). A total of 80 copies of three different insertion sequence elements are interspersed throughout the genome. Approximately 21% of the predicted ORFs have been inactivated via frameshifts, point mutations, insertion sequences, and putative deletions. The R. salmoninarum genome has extended regions of synteny to the Arthrobacter sp. strain FB24 and Arthrobacter aurescens TC1 genomes, but it is approximately 1.9 Mb smaller than both Arthrobacter genomes and has a lower G+C content, suggesting that significant genome reduction has occurred since divergence from the last common ancestor. A limited set of putative virulence factors appear to have been acquired via horizontal transmission after divergence of the species; these factors include capsular polysaccharides, heme sequestration molecules, and the major secreted cell surface antigen p57 (also known as major soluble antigen). Examination of the genome revealed a number of ORFs homologous to antibiotic resistance genes, including genes encoding β-lactamases, efflux proteins, macrolide glycosyltransferases, and rRNA methyltransferases. The genome sequence provides new insights into R. salmoninarum evolution and may facilitate identification of chemotherapeutic targets and vaccine candidates that can be used for prevention and treatment of infections in cultured salmonids. PMID:18723615

  14. Intracellular inclusions of a n-alkane-grown Arthrobacter

    International Nuclear Information System (INIS)

    The ultrastructural changes associated with the growth of a marine Arthrobacter sp. on n-hexadecane were demonstrated by transmission electron microscopy. Multiple electron translucent areas (ETI), similar to inclusions described by other investigators, were found in hydrocarbon-grown cells but not in peptone-grown cells. Stereological planimetry demonstrated that the ETI occupy as much as 40% of the hydrocarbon-grown cell's volume. Electron dense structures (EDI) were observed in hexadecane and in peptone-grown cells. Gas chromatographic analysis indicated traces of n-hexadecane associated with the hydrocarbon-grown cells: however, the hydrocarbon levels were not high enough to suggest the presence of hydrocarbon inclusions in the cells. Solvent partition studies with disrupted 14C-n-hexadecane-grown cells suggested that the intracellular radioactivity was associated with polar compounds. Acrylate-inhibited, hydrocarbon-grown Arthrobacter sp. did not form ETI, suggesting that the formation of ETI involves the participation of Coenzyme A. Thin-layer and gas chromatography indicated that the major intracellular components were glycerides, with one or more R groups composed of palmitic acid and free palmitic acid. 27 references, 5 figures, 2 tables

  15. Core collections of potato (Solanum) species native to the USA

    Science.gov (United States)

    Potato has two wild relatives native to the USA, Solanum jamesii (jam) and S. fendleri (fen). Core collections are a useful tool for genebanks, identifying a ranked minimum number of samples that together encompass most of the total diversity. With diversity measured as presence of AFLP bands, core ...

  16. Degradation of Swainsonine by the NADP-Dependent Alcohol Dehydrogenase A1R6C3 in Arthrobacter sp. HW08

    Directory of Open Access Journals (Sweden)

    Yan Wang

    2016-05-01

    Full Text Available Swainsonine is an indolizidine alkaloid that has been found in locoweeds and some fungi. Our previous study demonstrated that Arthrobacter sp. HW08 or its crude enzyme extract could degrade swainsonie efficiently. However, the mechanism of swainsonine degradation in bacteria remains unclear. In this study, we used label-free quantitative proteomics method based on liquid chromatography-electrospray ionization-tandem mass spectrometry to dissect the mechanism of swainsonine biodegradation by Arthrobacter sp. HW08. The results showed that 129 differentially expressed proteins were relevant to swainsonine degradation. These differentially expressed proteins were mostly related to the biological process of metabolism and the molecular function of catalytic activity. Among the 129 differentially expressed proteins, putative sugar phosphate isomerase/epimerase A1R5X7, Acetyl-CoA acetyltransferase A0JZ95, and nicotinamide adenine dinucleotide phosphate (NADP-dependent alcohol dehydrogenase A1R6C3 were found to contribute to the swainsonine degradation. Notably, NADP-dependent alcohol dehyrodgenase A1R6C3 appeared to play a major role in degrading swainsonine, but not as much as Arthrobacter sp. HW08 did. Collectively, our findings here provide insights to understand the mechanism of swainsonine degradation in bacteria.

  17. Degradation of Swainsonine by the NADP-Dependent Alcohol Dehydrogenase A1R6C3 in Arthrobacter sp. HW08

    Science.gov (United States)

    Wang, Yan; Zhai, A’guan; Zhang, Yanqi; Qiu, Kai; Wang, Jianhua; Li, Qinfan

    2016-01-01

    Swainsonine is an indolizidine alkaloid that has been found in locoweeds and some fungi. Our previous study demonstrated that Arthrobacter sp. HW08 or its crude enzyme extract could degrade swainsonie efficiently. However, the mechanism of swainsonine degradation in bacteria remains unclear. In this study, we used label-free quantitative proteomics method based on liquid chromatography-electrospray ionization-tandem mass spectrometry to dissect the mechanism of swainsonine biodegradation by Arthrobacter sp. HW08. The results showed that 129 differentially expressed proteins were relevant to swainsonine degradation. These differentially expressed proteins were mostly related to the biological process of metabolism and the molecular function of catalytic activity. Among the 129 differentially expressed proteins, putative sugar phosphate isomerase/epimerase A1R5X7, Acetyl-CoA acetyltransferase A0JZ95, and nicotinamide adenine dinucleotide phosphate (NADP)-dependent alcohol dehydrogenase A1R6C3 were found to contribute to the swainsonine degradation. Notably, NADP-dependent alcohol dehyrodgenase A1R6C3 appeared to play a major role in degrading swainsonine, but not as much as Arthrobacter sp. HW08 did. Collectively, our findings here provide insights to understand the mechanism of swainsonine degradation in bacteria. PMID:27196926

  18. Adhesion of an Amylolytic Arthrobacter sp. to Starch-Containing Plastic Films

    OpenAIRE

    Imam, Syed H.; Gould, J. Michael

    1990-01-01

    Cells of the amylolytic bacterium KB-1 (thought to be an Arthrobacter sp.) adhered (∼70%) to the surface of plastic films composed of starch-poly (methylacrylate) graft copolymer (starch-PMA), but did not adhere (

  19. Degradation of the Phosphonate Herbicide Glyphosate by Arthrobacter atrocyaneus ATCC 13752

    OpenAIRE

    Pipke, Rüdiger; Amrhein, Nikolaus

    1988-01-01

    Of nine authentic Arthrobacter strains tested, only A. atrocyaneus ATCC 13752 was capable of using the herbicide glyphosate [N-(phosphonomethyl)glycine] as its sole source of phosphorus. Contrary to the previously isolated Arthrobacter sp. strain GLP-1, which degrades glyphosate via sarcosine, A. atrocyaneus metabolized glyphosate to aminomethylphosphonic acid. The carbon of aminomethylphosphonic acid was entirely converted to CO2. This is the first report on glyphosate degradation by a bacte...

  20. Plant compounds that induce polychlorinated biphenyl biodegradation by Arthrobacter sp. strain B1B.

    OpenAIRE

    Gilbert, E S; Crowley, D. E.

    1997-01-01

    Plant compounds that induced Arthrobacter sp. strain B1B to cometabolize polychlorinated biphenyls (PCBs) were identified by a screening assay based on the formation of a 4,4'-dichlorobiphenyl ring fission product. A chemical component of spearmint (Mentha spicata), l-carvone, induced Arthrobacter sp. strain B1B to cometabolize Aroclor 1242, resulting in significant degradation of 26 peaks in the mixture, including selected tetra- and pentachlorobiphenyls. Evidence for PCB biodegradation incl...

  1. List of Strigiformes species in the Belgrade Natural History Museum bird collection

    Directory of Open Access Journals (Sweden)

    Novčić Ivana D.

    2004-01-01

    Full Text Available During re-inventory of the order Strigiformes in the ornithological collection of the Belgrade Natural History Museum, we recorded a total of 134 specimens, collected at over 40 localities throughout Serbia. Of these 71 are in the study collection, 59 in the exhibition collection, and four in the historical collection of birds. In view of the number of specimens diversity of species, and the geographical representatives, the collection of owls in the Natural History Museum represents an extremely important source of information for the taxon Strigiformes.

  2. Potential Risk of Hybridization in Ex Situ Collections of Two Endangered Species of Sinojackia Hu (Styracaceae)

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    Spontaneous hybridization in ex situ facilities can undermine the genetic integrity of ex situ collections and potentially contaminate open-pollinated seeds or seedlings destined for the reintroduction of endangered plant species into the wild. In the present study, the potential risk of hybridization between two endangered Chinese endemic species, namely Sinojackia xylocarpa Hu and S. rehderiana Hu, which are naturally allopatric species but were conserved ex situ in Wuhan Botanical Garden (WBG), Wuhan, China, were investigated over three consecutive years from 2003 to 2005. The entire overlapping flowering period of the two species was 14-20 d and the two species shared the same pollinator insects during the entire flowering season in WBG. The floral isolation between the two species was not an issue in the ex situ collection at WBG. The results suggest an opportunity for pollen transfer between species and a potential risk of genetic introgression and loss of genetic identity of open-pollinated seeds produced in the ex situ collection of these two endangered species. An artificial reciprocal cross between S. xylocarpa and S. rehderiana confirmed that the two congener species could readily set seeds, indicating no post-pollination barriers to hybridization and the importance of spatial isolation as a barrier to inter-specific crossing. Therefore, to manage these crossable species with overlapping flowering times and shared pollination vectors in ex situ facilities, spatial isolation should be carefully considered to minimize the possibility of spontaneous hybridization.

  3. 76 FR 17147 - Proposed Information Collection; Monitoring Recovered Species After Delisting-American Peregrine...

    Science.gov (United States)

    2011-03-28

    ... Threatened Wildlife on August 25, 1999 (64 FR 46542). Section 4(g) of the ESA requires that all species that... Fish and Wildlife Service Proposed Information Collection; Monitoring Recovered Species After Delisting... procedures for systematically monitoring recovered wildlife and plants. The American peregrine falcon has...

  4. Noteworthy lichen species in Poland collected in the Świętokrzyski National Park

    Directory of Open Access Journals (Sweden)

    Anna Łubek

    2014-08-01

    Full Text Available In this paper 25 species of the lichens new to the Świętokrzyski National Park are presented on the basis of recent collection and revision of the herbarial material from this arc. Some of these species are new to the Świętokrzykie Mountains and one have not been recorded in Poland so far.

  5. Use of Arthrobacter davidanieli as a live vaccine against Renibacterium salmoninarum and Piscirickettsia salmonis in salmonids.

    Science.gov (United States)

    Salonius, K; Siderakis, C; MacKinnon, A M; Griffiths, S G

    2005-01-01

    Arthrobacter davidanieli (proposed species nomenclature) is a non-pathogenic Gram-variable bacterium related to, but taxonomically distinct from, Renibacterium salmoninarum, the aetiological agent of bacterial kidney disease (BKD). We have demonstrated that vaccination with live A. davidanieli is effective against BKD in Atlantic salmon (Salmo salar) showing above 80 relative percent survival in experimental challenge trials. Good protection was also demonstrated in long-term field trials where Atlantic salmon were naturally exposed to R. salmoninarum challenge until 23 months after vaccination. The same vaccine, which is licensed in Canada against BKD has also proved effective in reducing mortality from experimental challenge of coho salmon (Oncorhynchus kisutch) with Piscirickettsia salmonis, the causative agent of piscirickettsiosis. Under field conditions in Chile, use of the vaccine led to a significant reduction in piscirickettsiosis mortality in coho salmon over 10 months following sea transfer. The vaccine strain is unique in that it is the first live organism to be licensed as a vaccine for use in aquaculture. Potential mechanisms of protection against the two taxonomically disparate pathogens are discussed. PMID:15962482

  6. Pollen grain traits of oil species from the Novi Sad collection

    OpenAIRE

    Atlagić Jovanka; Marjanović-Jeromela Ana; Marinković Radovan; Terzić Sreten

    2009-01-01

    The collection of oil species in Novi Sad contains 12 species represented with 1-4 cultivars or landraces. In the continuous work on this collection in the sense of breeding of some of those species and their usage as a source of 'desirable genes' we analyzed pollen grain morphology (shape and size), as well as pollen viability. To determine mentioned pollen traits we used Axiovert 40C microscope together with a software package (AxioVision LE; Rel.4.3.) for measurem...

  7. First Records of Two Species of Crabs (Crustacea: Decapoda: Brachyura Collected from Southern Korea

    Directory of Open Access Journals (Sweden)

    Hyun Sook Ko

    2013-04-01

    Full Text Available Two species of crabs, Homola orientalis Henderson, 1888 and Pseudomicippe nipponica (Sakai, 1938, are described and illustrated for the first time in Korea. Homola orientalis was collected at 30 m depth by trap from Busan, and P. nipponica was collected on the intertidal region in Seongsanpo, Jejudo Island. Homola orientalis is the first species of its family in the region. The family Homoldae is characterized by a linea homolica on the carapace and they carry camouflage in the form of sponges or cnidarians with subchelate of the fourth ambulatory legs. The Korean brachyuran fauna now comprises 223 species including the new records from this study.

  8. Collective decision making and social interaction rules in mixed-species flocks of songbirds.

    Science.gov (United States)

    Farine, Damien R; Aplin, Lucy M; Garroway, Colin J; Mann, Richard P; Sheldon, Ben C

    2014-09-01

    Associations in mixed-species foraging groups are common in animals, yet have rarely been explored in the context of collective behaviour. Despite many investigations into the social and ecological conditions under which individuals should form groups, we still know little about the specific behavioural rules that individuals adopt in these contexts, or whether these can be generalized to heterospecifics. Here, we studied collective behaviour in flocks in a community of five species of woodland passerine birds. We adopted an automated data collection protocol, involving visits by RFID-tagged birds to feeding stations equipped with antennae, over two winters, recording 91 576 feeding events by 1904 individuals. We demonstrated highly synchronized feeding behaviour within patches, with birds moving towards areas of the patch with the largest proportion of the flock. Using a model of collective decision making, we then explored the underlying decision rule birds may be using when foraging in mixed-species flocks. The model tested whether birds used a different decision rule for conspecifics and heterospecifics, and whether the rules used by individuals of different species varied. We found that species differed in their response to the distribution of conspecifics and heterospecifics across foraging patches. However, simulating decisions using the different rules, which reproduced our data well, suggested that the outcome of using different decision rules by each species resulted in qualitatively similar overall patterns of movement. It is possible that the decision rules each species uses may be adjusted to variation in mean species abundance in order for individuals to maintain the same overall flock-level response. This is likely to be important for maintaining coordinated behaviour across species, and to result in quick and adaptive flock responses to food resources that are patchily distributed in space and time. PMID:25214653

  9. Application of NAA method to study chromium uptake by Arthrobacter oxydans

    International Nuclear Information System (INIS)

    To study chromium uptake by Arthrobacter oxydans (Cr(VI)-reducer bacteria isolated from Columbia basalt rocks, USA) instrumental neutron activation analysis method was applied. It was established that chromate accumulation is dose-dependent and it is more intensive in the interval of concentrations of Cr(VI) (10-50 mg/l). At low concentrations of Cr(VI) (up to 50 mg/l) the most intensive formation of Cr(V) was also found (using ESR method). Besides, it was estimated that reduction from Cr(VI) to Cr(V) is faster process than the uptake of Cr(VI). According to ENAA measurements Cr(III), in constant to Cr(VI), is not accumulated in Arthrobacter oxydans cells up to concentration of 200 mg/l. Using epithermal neutron activation analysis the background levels of 17 major, minor and trace elements were determined in Arthrobacter oxydans

  10. Assessing DNA Barcodes for Species Identification in North American Reptiles and Amphibians in Natural History Collections

    Science.gov (United States)

    Chambers, E. Anne; Hebert, Paul D. N.

    2016-01-01

    Background High rates of species discovery and loss have led to the urgent need for more rapid assessment of species diversity in the herpetofauna. DNA barcoding allows for the preliminary identification of species based on sequence divergence. Prior DNA barcoding work on reptiles and amphibians has revealed higher biodiversity counts than previously estimated due to cases of cryptic and undiscovered species. Past studies have provided DNA barcodes for just 14% of the North American herpetofauna, revealing the need for expanded coverage. Methodology/Principal Findings This study extends the DNA barcode reference library for North American herpetofauna, assesses the utility of this approach in aiding species delimitation, and examines the correspondence between current species boundaries and sequence clusters designated by the BIN system. Sequences were obtained from 730 specimens, representing 274 species (43%) from the North American herpetofauna. Mean intraspecific divergences were 1% and 3%, while average congeneric sequence divergences were 16% and 14% in amphibians and reptiles, respectively. BIN assignments corresponded with current species boundaries in 79% of amphibians, 100% of turtles, and 60% of squamates. Deep divergences (>2%) were noted in 35% of squamate and 16% of amphibian species, and low divergences (<2%) occurred in 12% of reptiles and 23% of amphibians, patterns reflected in BIN assignments. Sequence recovery declined with specimen age, and variation in recovery success was noted among collections. Within collections, barcodes effectively flagged seven mislabeled tissues, and barcode fragments were recovered from five formalin-fixed specimens. Conclusions/Significance This study demonstrates that DNA barcodes can effectively flag errors in museum collections, while BIN splits and merges reveal taxa belonging to deeply diverged or hybridizing lineages. This study is the first effort to compile a reference library of DNA barcodes for herpetofauna

  11. Pollen grain traits of oil species from the Novi Sad collection

    Directory of Open Access Journals (Sweden)

    Atlagić Jovanka

    2009-01-01

    Full Text Available The collection of oil species in Novi Sad contains 12 species represented with 1-4 cultivars or landraces. In the continuous work on this collection in the sense of breeding of some of those species and their usage as a source of 'desirable genes' we analyzed pollen grain morphology (shape and size, as well as pollen viability. To determine mentioned pollen traits we used Axiovert 40C microscope together with a software package (AxioVision LE; Rel.4.3. for measurement of pollen length and width. Pollen viability was determined using a staining method (ALEXANDER, 1969. The results showed that species differ by pollen grain shape (round, egg-shaped, triangular and rod as well as by shape of exine (thick and spiky, thick to thin. In some species there was a specific number of apertures present (1-11. The size of viable pollen grains ranged from 29,10/12,58μ (coriander to 176,63/169,94μ (oil gourd, while non-viable pollen grains were always smaller (27,27/10,97μ to 119,62/100,86μ at the same plant species. Pollen viability of most species was around 80%. Lowest pollen viability was found in white flax (56,98%, and the highest in oil pumpkin (91,43%.

  12. Evaluation of Antioxidant Activity of Crataegus species Collected from Different Regions of Turkey

    Directory of Open Access Journals (Sweden)

    Mustafa Özyürek

    2012-03-01

    Full Text Available Crataegus species (Rosaceae, known as “Howthorn” have found special medicinal use for the treatment of mild heart diseases. This work aims to measure the antioxidant capacities of various Crataegus species growing in Turkey . In this study, the flowers and leaves from 52 samples belonging to 17 taxa of 14 Crataegus species naturally growing in Turkey have been investigated for their antioxidant activity/capacity. Four different methods (CUPRAC, FRAP, ABTS/Persulfate and Folin: FCR assays were used for determination of the antioxidant capacities of the samples. The leaves and the flowers of the plants were studied separately. Samples representing the same species collected from different locations were studied separately. The results have indicated that the samples differing by some minor morphological characteristics exhibit considerably different antioxidant capacities. Among the flower samples, the most effective species was C. × sinaica Boiss. nothosubsp. sinaica and among the leaf samples C. pentagyna Waldst and Kit. ex. Willd. were the most active. Generally, C. monogyna Jacq. samples have exhibited markedly high antioxidant activity. Moreover, the species collected from Bolu district (surrounded by several forest s and lake s have shown significantly high activity regardless of the species differences among the samples.

  13. Cryptic species of hairworm parasites revealed by molecular data and crowdsourcing of specimen collections.

    Science.gov (United States)

    Hanelt, Ben; Schmidt-Rhaesa, Andreas; Bolek, Matthew G

    2015-01-01

    Recognizing cryptic species promotes a better understanding of biodiversity, systematics, evolutionary biology, and biogeography. When cryptic species are disease-causing organisms, such as parasites, their correct recognition has important implications for the study of epidemiology, disease ecology, and host-parasite relationships. Freshwater nematomorphs (Nematomorpha: Gordiida) or hairworms, are an enigmatic yet fascinating group of parasites that are known to manipulate host behavior to aid transition from the parasitic phase, within terrestrial insects, to the free-living aquatic stage. Hairworm taxonomy has been hampered by a paucity of informative diagnostic characters and it has long been suspected that this group contains numerous cryptic species. Study of single hairworm species over large geographical areas has been difficult due to extremely rare encounters and unreliable methods of collecting adult worms. Here we report that by using crowdsourcing, citizen scientists have collected and submitted samples of Gordius cf. robustus from throughout its range in North America making its genetic study possible. Combined with our own collections, we examined samples from 28 localities within the USA; despite the collection of numerous hairworms from Canada and Mexico, G. cf. robustus were not collected outside of the contiguous United States. Mitochondrial CO1 genetic distances revealed that specimens grouped into 8 clades separated by 8-24.3%. In addition, molecular evidence from mitochondrial (CO1 and cytB) and nuclear (partial 28S, ITS1, 5.8S and ITS2) DNA suggests that these 8 clades are distinct species and that this group of species is paraphyletic, since the North American species G. attoni and the European species G. aquaticus and G. balticus group among the G. robustus lineages. Furthermore, there was a significant correlation between genetic (CO1) and geographic distance between the 8 Gordius species. This study demonstrates the value of involving the

  14. Interspecific shared collective decision-making in two forensically important species.

    Science.gov (United States)

    Boulay, Julien; Deneubourg, Jean-Louis; Hédouin, Valéry; Charabidzé, Damien

    2016-02-10

    To date, the study of collective behaviour has mainly focused on intraspecific situations: the collective decision-making of mixed-species groups involving interspecific aggregation-segregation has received little attention. Here, we show that, in both conspecific and heterospecific groups, the larvae of two species (Lucilia sericata and Calliphora vomitoria, calliphorid carrion-feeding flies) were able to make a collective choice. In all groups, the choice was made within a few minutes and persisted throughout the period of the experiment. The monitoring of a focal individual within a group showed that these aggregations were governed by attractive and retentive effects of the group. Furthermore, the similarity observed between the conspecific and heterospecific groups suggested the existence of shared aggregation signals. The group size was found to have a stronger influence than the species of necrophagous larvae. These results should be viewed in relation to the well-known correlation between group size and heat generation. This study provides the first experimental examination of the dynamics of collective decision-making in mixed-species groups of invertebrates, contributing to our understanding of the cooperation-competition phenomenon in animal social groups. PMID:26865296

  15. SDMdata: A Web-Based Software Tool for Collecting Species Occurrence Records.

    Directory of Open Access Journals (Sweden)

    Xiaoquan Kong

    Full Text Available It is important to easily and efficiently obtain high quality species distribution data for predicting the potential distribution of species using species distribution models (SDMs. There is a need for a powerful software tool to automatically or semi-automatically assist in identifying and correcting errors. Here, we use Python to develop a web-based software tool (SDMdata to easily collect occurrence data from the Global Biodiversity Information Facility (GBIF and check species names and the accuracy of coordinates (latitude and longitude. It is an open source software (GNU Affero General Public License/AGPL licensed allowing anyone to access and manipulate the source code. SDMdata is available online free of charge from .

  16. Arthrobacter nitroguajacolicus sp. nov., a novel 4-nitroguaiacol-degrading actinobacterium

    Czech Academy of Sciences Publication Activity Database

    Koutoučková, L.; Schumann, P.; Durnová, E.; Spröer, C.; Sedláček, I.; Neča, J.; Zdráhal, Zbyněk; Němec, M.

    2004-01-01

    Roč. 54, č. 3 (2004), s. 773-777. ISSN 1466-5026 R&D Projects: GA ČR GA204/00/P095 Institutional research plan: CEZ:AV0Z4031919 Keywords : Nitroguaiacol * actinobacterium * Arthrobacter Subject RIV: CB - Analytical Chemistry, Separation Impact factor: 3.015, year: 2004

  17. Purification and Characterization of Two Extracellular Alkaline Phosphatases from a Psychrophilic Arthrobacter Isolate

    OpenAIRE

    Prada, P; Brenchley, J E

    1997-01-01

    Two extracellular, heat-labile alkaline phosphatases were purified from a psychrophilic Arthrobacter isolate, D10. The enzymes were active over different pH ranges, used distinct substrates, and had different kinetic properties. Each enzyme reacted specifically to its own antibody during immunoblot analysis. One had both monophosphatase and diesterase activities.

  18. [Heterotrophic Nitrification and Aerobic Denitrification of the Hypothermia Aerobic Denitrification Bacterium: Arthrobacter arilaitensis].

    Science.gov (United States)

    He, Teng-xia; Ni, Jiu-pai; Li, Zhen-lun; Sun, Quan; Ye Qing; Xu, Yi

    2016-03-15

    High concentrations of ammonium, nitrate and nitrite nitrogen were employed to clarify the abilities of heterotrophic nitrification and aerobic denitrification of Arthrobacter arilaitensis strain Y-10. Meanwhile, by means of inoculating the strain suspension into the mixed ammonium and nitrate, ammonium and nitrite nitrogen simulated wastewater, we studied the simultaneous nitrification and denitrification ability of Arthrobacter arilaitensis strain Y-10. In addition, cell optical density was assayed in each nitrogen removal process to analyze the relationship of cell growth and nitrogen removal efficiency. The results showed that the hypothermia denitrification strain Arthrobacter arilaitensis Y-10 exhibited high nitrogen removal efficiency during heterotrophic nitrification and aerobic denitrification. The ammonium, nitrate and nitrite removal rates were 65.0%, 100% and 61.2% respectively when strain Y-10 was cultivated for 4 d at 15°C with initial ammonium, nitrate and nitrite nitrogen concentrations of 208.43 mg · L⁻¹, 201.16 mg · L⁻¹ and 194.33 mg · L⁻¹ and initial pH of 7.2. Nitrite nitrogen could only be accumulated in the medium containing nitrate nitrogen during heterotrophic nitrification and aerobic denitrification process. Additionally, the ammonium nitrogen was mainly removed in the inorganic nitrogen mixed synthetic wastewater. In short, Arthrobacter arilaitensis Y-10 could conduct nitrification and denitrification effectively under aerobic condition and the ammonium nitrogen removal rate was more than 80.0% in the inorganic nitrogen mixed synthetic wastewater. PMID:27337904

  19. Essential and non-essential element concentrations in two sleeper shark species collected in arctic waters

    Energy Technology Data Exchange (ETDEWEB)

    McMeans, Bailey C. [Great Lakes Institute for Environmental Research, University of Windsor, 401 Sunset Avenue, Windsor, ON, N9B 3P4 (Canada); Borga, Katrine [Norwegian Institute for Water Research, P.O. Box 173, Kjelsas, N-0411 Oslo (Norway); Bechtol, William R. [Alaska Department of Fish and Game, Division of Commercial Fisheries, Anchorage, AK 99518-1599 (United States); Higginbotham, David [Warnell School of Forestry and Natural Resources, University of Georgia, Athens, GA 30602-2152 (United States); Fisk, Aaron T. [Great Lakes Institute for Environmental Research, University of Windsor, 401 Sunset Avenue, Windsor, ON, N9B 3P4 (Canada)]. E-mail: afisk@uwindsor.ca

    2007-07-15

    A number of elements/metals have increased in arctic biota and are of concern due to their potential toxicity. Most studies on elements in the Arctic have focused on marine mammals and seabirds, but concentrations in the Greenland shark (Somniosus microcephalus) and Pacific sleeper shark (Somniosus pacificus), the only two shark species known to regularly inhabit arctic waters, have never been reported. To address this data gap, concentrations and patterns of 25 elements were analyzed in liver of Greenland sharks collected about Cumberland Sound (n = 24) and Pacific sleeper sharks collected about Prince William Sound (n = 14). Several non-essential elements differed between species/locations, which could suggest geographical exposure differences or ecological (e.g., diet) differences between the species. Certain essential elements also differed between the two sleeper sharks, which may indicate different physiological requirements between these closely related shark species, although information on such relationships are lacking for sharks and fish. - Patterns of essential and non-essential elements provide insight into sleeper shark biology and physiology.

  20. Accumulation features of arsenic species in various fishes collected from coastal cities in Korea

    Science.gov (United States)

    Choi, Sung-Deuk; Son, Hee-Sik; Choi, Minkyu; Park, Min-Kyu

    2015-12-01

    In this study, 36 fish species were collected from three coastal cities in Korea to investigate levels and patterns of six arsenicals (arsenite: As (III), arsenate: As (V), arsenocholine: AsC, arsenobetaine: AsB, monomethylarsonic acid: MMA, and dimethylarsinic acid: DMA). The levels of ∑6 As in the different fish species varied substantially, ranging from 0.02 μg As/g ww (Islaeli carp) to 9.65 μg As/g ww (Skate ray) with a median of 0.40 μg As/g ww. All the arsenicals in marine fishes showed higher levels than those in freshwater fishes due to fish feed living in saline water. Overall, marine carnivorous fishes seem to be more contaminated with arsenic. For all the fish samples, AsB (mean fraction: 90.6%) was dominant among the six arsenicals, indicating biomethylation of inorganic arsenic and accumulation of AsB. Fish species with high water contents showed elevated levels of As (III), but there was no further significant correlations between arsenicals and water/lipid contents. Concentrations of As (V) were significantly lower than those of As (III), which implies that As (V) is reduced during biomethylation of inorganic arsenic. Consequently, we hypothesize that the toxicity of arsenic (mainly derived from As (III)) can be increased by the reduction of As (V), especially for the fish species with higher water contents.

  1. Species of Spalangia (Hymenoptera: Pteromalidae collected from buffalo dung in Itumbiara, Goias, Brazil

    Directory of Open Access Journals (Sweden)

    Michel E. V. Milhomem

    2004-11-01

    Full Text Available This study had the objective of determining the species of Spalangia in pupae of muscoid Diptera present in buffalo dung, collected in the municipality of Itumbiara, GO, from May to December 2003. The dipterous pupae were obtained by the flotation method. They were individually placed in gelatin capsules until the emergence of the flies and/or their parasitoids. The overall prevalence of parasitism was 2.59%. The prevalences of parasitism presented by the parasitoid species Spalangia cameroni (Perkins, Spalangia drosophilae (Ashmead, Spalangia endius (Walker, Spalangia nigra (Letraille and Spalangia nigroaenea (Curtis were 0.53%, 1.37%, 0.15%, 0.04% and 0.49%, respectively.

  2. Wild Termitomyces Species Collected from Ondo and Ekiti States Are More Related to African Species as Revealed by ITS Region of rDNA

    OpenAIRE

    Victor Olusegun Oyetayo

    2012-01-01

    Molecular identification of eighteen Termitomyces species collected from two states, Ondo and Ekiti in Nigeria was carried out using the internal transcribed spacer (ITS) region. The amplicons obtained from rDNA of Termitomyces species were compared with existing sequences in the NCBI GenBank. The results of the ITS sequence analysis discriminated between all the Termitomyces species (obtained from Ondo and Ekiti States) and Termitomyces sp. sequences obtained from NCBI GenBank. The degree of...

  3. Improved biosorption for Cr(VI) reduction and removal by Arthrobacter viscosus using zeolite

    OpenAIRE

    Silva, Bruna Andreia Nogueira Airosa; Figueiredo, Hugo; Quintelas, C.; Neves, Isabel C.; Tavares, M.T.

    2012-01-01

    The aim of the present work was to optimize the reduction and removal of chromium from aqueous solutions by a biosorption system consisting of a bacteria supported on a zeolite. The system proposed combines the biosorption properties of Arthrobacter viscosus, with the ion exchange capacity of NaY zeolite. Experiments were also performed without the zeolite for comparison purposes. Experimental parameters such as solution pH, biomass concentration and initial Cr(VI) concentration were investig...

  4. Improving the Survival of Arthrobacter sp., CW9 during Spray Drying Monitored by Scan Electric Microscope

    OpenAIRE

    Zhenqiang Xia; Ming Zhu; Yanqiu Zhang

    2014-01-01

    The culture of an aquaculture probiotic, i.e., Arthrobacter sp., CW9, was spray dried with different carriers/protectants, in which Scan Electric Microscope (SEM) was used to analyze the surface of micro-paticles produced by spray-drying. Matrix of protectants, inlet temperature and feed rate were optimized according to the survival rate after spray drying. Scanning electron micrographs showed that cracks formed on the particle surface were a key factor in enhancing bacteria survival during s...

  5. Isolation and Preliminary Characterization of Twenty Bacteriophages Infecting Either Brevibacterium or Arthrobacter Strains

    OpenAIRE

    Trautwetter, Annie; Blanco, Carlos

    1988-01-01

    Thirty-seven bacteriophages plaquing on Corynebacterium, Brevibacterium, or Arthrobacter strains were isolated from soil or vegetation samples. Restriction analysis of phage DNA indicated that 20 phages were unique; one of them produced entirely turbid plaques on Brevibacterium ketoglutamicum and was characterized as temperate. All these phages were assigned to group B of the classification of Bradley (Bacteriol. Rev. 31:230-314, 1967) and had relatively narrow host ranges.

  6. New metabolic pathway for degradation of 2-nitrobenzoate by Arthrobacter sp. SPG

    Directory of Open Access Journals (Sweden)

    Pankaj Kumar Arora

    2015-06-01

    Full Text Available Arthrobacter sp. SPG utilized 2-nitrobenzoate as its sole source of carbon and energy and degraded it with accumulation of stoichiometric amounts of nitrite ions. Salicylate and catechol were detected as metabolites of the 2-nitrobenzoate degradation using high performance liquid chromatography and gas chromatography-mass spectrometry. Enzyme activities for 2-nitrobenzoate-2-monooxygenase, salicylate hydroxylase, and catechol-1,2-dioxygenase were detected in the crude extracts of the 2-nitrobenzoate-induced cells of strain SPG. The 2-nitrobenzoate-monooxygenase activity resulted in formation of salicylate and nitrite from 2-nitrobenzoate whereas salicylate hydroxylase catalyzed the conversion of salicylate to catechol. The ring-cleaving enzyme, catechol-1,2-dioxygenase cleaved catechol to cis, cis-muconic acid. Cells of strain SPG were able to degrade 2-nitrobenzoate in sterile as well as non-sterile soil microcosms. The results of microcosm studies showed that strain SPG degraded more than 90% of 2-nitrobenzoate within 10-12 days. This study clearly shows that Arthrobacter sp. SPG degraded 2-nitrobenzoate via a new pathway with formation of salicylate and catechol as metabolites. Arthrobacter sp. SPG may be used for bioremediation of 2-nitrobenzoate-contaminated sites due to its ability to degrade 2-nitrobenzoate in soil.

  7. Effect of Three Centaurea Species Collected from Central Anatolia Region of Turkey on Human Melanoma Cells.

    Science.gov (United States)

    Russo, Alessandra; Cardile, Venera; Graziano, Adriana C E; Rigano, Daniela; Aktumsek, Abdurrahman; Zengin, Gokhan; Senatore, Felice

    2016-03-01

    Centaurea is the largest genus within the Asteraceae family. Many members of this genus are used in traditional folk medicine, such as Centaurea pulchella used to treat skin problems such as to resolve the abscess. Although biological activities of many Centaurea species have been investigated in different countries and Turkey, cytotoxic effect of C. patula, C. pulchella and C. tchihatcheffii has not been studied yet. Melanoma is one of the most invasive and deadly forms of skin cancer. Therefore, in an ongoing effort to identify new natural anticancer products for the treatment and/or prevention of melanoma cancer, the present study was undertaken to investigate the effect of these Centaurea species, collected from Central Anatolia region of Turkey on cell growth and death in human melanoma cell line, A375.The results revealed that all extracts were able to inhibit, after 48 h of treatment, the growth of cancer cells, that could be related to an overall action of the phenolic compounds present. In fact, C. pulchella, with the highest level of phenolics, showed a major activity followed by C. patula and C. tchihatcheffii. Our data also demonstrate that these natural products induce apoptotic cell death. In conclusion, the study of plant extracts for their cytotoxic and apoptotic properties has shown that medicinal herbs from Centaurea species might have also importance in the prevention and treatment of melanoma. PMID:27169173

  8. Improving and integrating data on invasive species collected by citizen scientists

    Science.gov (United States)

    2010-01-01

    Limited resources make it difficult to effectively document, monitor, and control invasive species across large areas, resulting in large gaps in our knowledge of current and future invasion patterns. We surveyed 128 citizen science program coordinators and interviewed 15 of them to evaluate their potential role in filling these gaps. Many programs collect data on invasive species and are willing to contribute these data to public databases. Although resources for education and monitoring are readily available, groups generally lack tools to manage and analyze data. Potential users of these data also retain concerns over data quality. We discuss how to address these concerns about citizen scientist data and programs while preserving the advantages they afford. A unified yet flexible national citizen science program aimed at tracking invasive species location, abundance, and control efforts could be designed using centralized data sharing and management tools. Such a system could meet the needs of multiple stakeholders while allowing efficiencies of scale, greater standardization of methods, and improved data quality testing and sharing. Finally, we present a prototype for such a system (see www.citsci.org).

  9. Diversity Driven Coexistence: Collective Stability in the Cyclic Competition of Three Species

    Science.gov (United States)

    Bassler, Kevin E.; Frey, Erwin; Zia, R. K. P.

    2015-03-01

    The basic physics of collective behavior are often difficult to quantify and understand, particularly when the system is driven out of equilibrium. Many complex systems are usefully described as complex networks, consisting of nodes and links. The nodes specify individual components of the system and the links describe their interactions. When both nodes and links change dynamically, or `co-evolve', as happens in many realistic systems, complex mathematical structures are encountered, posing challenges to our understanding. In this context, we introduce a minimal system of node and link degrees of freedom, co-evolving with stochastic rules. Specifically, we show that diversity of social temperament (intro- or extroversion) can produce collective stable coexistence when three species compete cyclically. It is well-known that when only extroverts exist in a stochastic rock-paper-scissors game, or in a conserved predator-prey, Lotka-Volterra system, extinction occurs at times of O(N), where N is the number of nodes. We find that when both introverts and extroverts exist, where introverts sever social interactions and extroverts create them, collective coexistence prevails in long-living, quasi-stationary states. Work supported by the NSF through Grants DMR-1206839 (KEB) and DMR-1244666 (RKPZ), and by the AFOSR and DARPA through Grant FA9550-12-1-0405 (KEB).

  10. Parasites of domestic and wild animals in South Africa. XLIV. Fleas (Insecta : Siphonaptera : Pulicidae collected from 15 carnivore species

    Directory of Open Access Journals (Sweden)

    I.G. Horak

    2004-11-01

    Full Text Available Fleas were collected from 61 wild carnivores belonging to 13 species in various nature reserves and on farms, two feral domestic cats in a nature reserve and a domestic dog in the city of Johannesburg. Eleven flea species, including two subspecies of one of these, belonging to six genera were recovered. Amongst these only Ctenocephalides felis felis and Ctenocephalides felis strongylus are considered specific parasites of carnivores. The remaining ten species normally infest the prey animals of the various carnivores.

  11. Prevalence of Anaplasma, Bartonella and Borrelia Species in Haemaphysalis longicornis collected from goats in North Korea.

    Science.gov (United States)

    Kang, Jun-Gu; Ko, Sungjin; Smith, W Barney; Kim, Heung-Chul; Lee, In-Yong; Chae, Joon-Seok

    2016-06-30

    North Korea is located on the northern part of the Korean Peninsula in East Asia. While tick-borne pathogens of medical and veterinary importance have been reported from China and South Korea, they have not been reported from North Korea. To screen for zoonotic tick-borne pathogens in North Korea, ticks were collected from domestic goats. A total of 292 (27 nymph, 26 male, 239 female) Haemaphysalis (H.) longicornis were collected and assayed individually for selected tick-borne pathogens. A total of 77 (26.4%) were positive for Anaplasma bovis, followed by Bartonella (B.) grahamii (15, 5.1%), Anaplasma phagocytophilum (12, 4.1%), Bartonella henselae (10, 3.4%), and Borrelia spp. (3, 1.0%) based on 16S ribosomal RNA and ITS species-specific nested polymerase chain reaction. Using the groEL-based nested PCR, a total of 6 and 1 H. longicornis were positive for B. grahamii and B. henselae, respectively. All products were sequenced and demonstrated 100% identity and homology with previously reported sequences from other countries in GenBank. This is the first report of the detection of tick-borne pathogens in the North Korea and suggests that farm animals may act as reservoirs for zoonotic tick-borne pathogens. PMID:26645342

  12. Complete genome sequence and metabolic potential of the quinaldine-degrading bacterium Arthrobacter sp. Rue61a

    Directory of Open Access Journals (Sweden)

    Niewerth Heiko

    2012-10-01

    Full Text Available Abstract Background Bacteria of the genus Arthrobacter are ubiquitous in soil environments and can be considered as true survivalists. Arthrobacter sp. strain Rue61a is an isolate from sewage sludge able to utilize quinaldine (2-methylquinoline as sole carbon and energy source. The genome provides insight into the molecular basis of the versatility and robustness of this environmental Arthrobacter strain. Results The genome of Arthrobacter sp. Rue61a consists of a single circular chromosome of 4,736,495 bp with an average G + C content of 62.32%, the circular 231,551-bp plasmid pARUE232, and the linear 112,992-bp plasmid pARUE113 that was already published. Plasmid pARUE232 is proposed to contribute to the resistance of Arthrobacter sp. Rue61a to arsenate and Pb2+, whereas the linear plasmid confers the ability to convert quinaldine to anthranilate. Remarkably, degradation of anthranilate exclusively proceeds via a CoA-thioester pathway. Apart from quinaldine utilization, strain Rue61a has a limited set of aromatic degradation pathways, enabling the utilization of 4-hydroxy-substituted aromatic carboxylic acids, which are characteristic products of lignin depolymerization, via ortho cleavage of protocatechuate. However, 4-hydroxyphenylacetate degradation likely proceeds via meta cleavage of homoprotocatechuate. The genome of strain Rue61a contains numerous genes associated with osmoprotection, and a high number of genes coding for transporters. It encodes a broad spectrum of enzymes for the uptake and utilization of various sugars and organic nitrogen compounds. A. aurescens TC-1 is the closest sequenced relative of strain Rue61a. Conclusions The genome of Arthrobacter sp. Rue61a reflects the saprophytic lifestyle and nutritional versatility of the organism and a strong adaptive potential to environmental stress. The circular plasmid pARUE232 and the linear plasmid pARUE113 contribute to heavy metal resistance and to the ability to degrade

  13. 2,3-Dihydroxybiphenyl dioxygenase gene was first discovered in Arthrobacter sp. strain P J3

    Institute of Scientific and Technical Information of China (English)

    YANG MeiYing; MA PengDa; LI WenMing; LIU JinYing; LI Liang; ZHU XiaoJuan; WANG XingZhi

    2007-01-01

    Bacterium strain PJ3, isolated from wastewater and identified as Arthrobacter sp. bacterium based on its 16S rDNA gene, could use carbazole as the sole carbon, nitrogen and energy source. The genomic libraryof strain PJ3 was constructed and a positive clone JM109 (pUCW402) was screened out for the expression of dioxygenase by the ability to form yellow ring-fission product. A 2,3-dihydroxybiphenyl dioxygenase (23DHBD) gene of 933 bp was found in the 3360 bp exogenous fragment of pUCW402 by GenSCAN software and BLAST analysis. The phylogenetic analysis showed that 23DHBD from strain PJ3 formed a deep branch separate from a cluster containing most known 23DHBD in GenBank.Southern hybridization confirmed for the first time that the 23DHBD gene was from the genomic DNA of Arthrobacter sp. PJ3. In order to test the gene function, recombinant bacterium BL21 (pETW-8) was constructed to express 23DHBD. The expression level in BL21 (pETW-8) was highest compared with the recombinant bacteria JM109 (pUCW402) and strain PJ3. We observed that 23DHBD was not absolute specific. The enzyme activity was higher with 2,3-dihydroxybiphenyl as a substrate than with catechol.The substrate specificity assay suggested that 23DHBD was essential for cleavage of bi-cyclic aromatic compounds during the course of aromatic compound biodegradation in Arthrobacter sp. strain PJ3.

  14. Informing species conservation at multiple scales using data collected for marine mammal stock assessments.

    Directory of Open Access Journals (Sweden)

    Alana Grech

    Full Text Available BACKGROUND: Conservation planning and the design of marine protected areas (MPAs requires spatially explicit information on the distribution of ecological features. Most species of marine mammals range over large areas and across multiple planning regions. The spatial distributions of marine mammals are difficult to predict using habitat modelling at ecological scales because of insufficient understanding of their habitat needs, however, relevant information may be available from surveys conducted to inform mandatory stock assessments. METHODOLOGY AND RESULTS: We use a 20-year time series of systematic aerial surveys of dugong (Dugong dugong abundance to create spatially-explicit models of dugong distribution and relative density at the scale of the coastal waters of northeast Australia (∼136,000 km(2. We interpolated the corrected data at the scale of 2 km * 2 km planning units using geostatistics. Planning units were classified as low, medium, high and very high dugong density on the basis of the relative density of dugongs estimated from the models and a frequency analysis. Torres Strait was identified as the most significant dugong habitat in northeast Australia and the most globally significant habitat known for any member of the Order Sirenia. The models are used by local, State and Federal agencies to inform management decisions related to the Indigenous harvest of dugongs, gill-net fisheries and Australia's National Representative System of Marine Protected Areas. CONCLUSION/SIGNIFICANCE: In this paper we demonstrate that spatially-explicit population models add value to data collected for stock assessments, provide a robust alternative to predictive habitat distribution models, and inform species conservation at multiple scales.

  15. Accumulation of rare earth elements by siderophore-forming Arthrobacter luteolus isolated from rare earth environment of Chavara, India

    Indian Academy of Sciences (India)

    E S Challaraj Emmanuel; T Ananthi; B Anandkumar; S Maruthamuthu

    2012-03-01

    In this study, Arthrobacter luteolus, isolated from rare earth environment of Chavara (Quilon district, Kerala, India), were found to produce catechol-type siderophores. The bacterial strain accumulated rare earth elements such as samarium and scandium. The siderophores may play a role in the accumulation of rare earth elements. Catecholate siderophore and low-molecular-weight organic acids were found to be present in experiments with Arthrobacter luteolus. The influence of siderophore on the accumulation of rare earth elements by bacteria has been extensively discussed.

  16. Metabolic pathway for degradation of 2-chloro-4-aminophenol by Arthrobacter sp. SPG

    OpenAIRE

    Arora, Pankaj Kumar; Mohanta, Tapan Kumar; Srivastava, Alok; Bae, Hanhong; Singh, Vijay Pal

    2014-01-01

    A degradation pathway of 2-chloro-4-aminophenol (2C4AP) was studied in an Arthrobacter sp. SPG that utilized 2C4AP as its sole source of carbon and energy. The 2C4AP degradation was initiated by a 2C4AP-deaminase that catalyzed the conversion of 2C4AP into chlorohydroquinone (CHQ) with removal of ammonium ion. In the next step, a CHQ-dehalogenase dehalogenated CHQ to hydroquinone (HQ) that cleaved into γ-hydroxymuconic semialdehyde by a HQ-dioxygenase. The 2C4AP degradation was also investiga...

  17. Impact of phenolic substrate and growth temperature on the arthrobacter chlorophenolicus proteome

    Energy Technology Data Exchange (ETDEWEB)

    Unell, Maria; Abraham, Paul E.; Shah, Manesh; Zhang, Bing; Ruckert, Christian; VerBerkmoes, Nathan C.; Jansson, Janet K.

    2009-02-15

    We compared the Arthrobacter chlorophenolicus proteome during growth on 4-chlorophenol, 4-nitrophenol or phenol at 5 C and 28 C; both for the wild type and a mutant strain with mass spectrometry based proteomics. A label free workflow employing spectral counting identified 3749 proteins across all growth conditions, representing over 70% of the predicted genome and 739 of these proteins form the core proteome. Statistically significant differences were found in the proteomes of cells grown under different conditions including differentiation of hundreds of unknown proteins. The 4-chlorophenol-degradation pathway was confirmed, but not that for phenol.

  18. Draft Genome Sequence of Arthrobacter enclensis NCIM 5488T for Secondary Metabolism

    Science.gov (United States)

    Neurgaonkar, Priya S.; Dharne, Mahesh S.

    2016-01-01

    Here, we report the draft genome sequence of Arthrobacter enclensis NCIM 5488T, an actinobacterium isolated from a marine sediment sample from Chorao Island, Goa, India. This draft genome sequence consists of 4,226,231 bp with a G+C content of 67.08%, 3,888 protein-coding genes, 50 tRNAs, and 10 rRNAs. Analysis of the genome using bioinformatics tools such as antiSMASH and NaPDoS showed the presence of many unique natural product biosynthetic gene clusters. PMID:27257206

  19. Impact of Phenolic Substrate and Growth Temperature on the Arthrobacter chlorophenolicus Proteome

    Energy Technology Data Exchange (ETDEWEB)

    Unell, Maria [Swedish University of Agricultural Sciences, Upsalla, Sweden; Abraham, Paul E [ORNL; Shah, Manesh B [ORNL; Zhang, B [Vanderbilt University; Ruckert, Christian [Bielefeld University, Center for Biotechnology, Bielefeld, Germany; Verberkmoes, Nathan C [ORNL; Jansson, J [Swedish University of Agricultural Sciences, Upsalla, Sweden

    2009-01-01

    We compared the Arthrobacter chlorophenolicus proteome during growth on 4-chlorophenol, 4-nitrophenol, or phenol at 5 and 28 C, both for the wild-type and a mutant strain with mass spectrometry based proteomics. A label-free workflow employing spectral counting identified 3749 proteins across all growth conditions, representing over 70% of the predicted genome and 739 of these proteins form the core proteome. Statistically significant differences were found in the proteomes of cells grown under different conditions including differentiation of hundreds of unknown proteins. The 4-chlorophenol- degradation pathway was confirmed, but not that for phenol.

  20. 78 FR 77705 - Proposed Agency Information Collection Activity: Nonindigenous Aquatic Species Sighting Reporting...

    Science.gov (United States)

    2013-12-24

    ... health-related costs of invasive species exceed those of all other natural disasters combined. Through its Invasive Species Program ( http://www.usgs.gov/ecosystems/invasive_species/ ), the USGS plays an important role in federal efforts to combat invasive species in natural and semi-natural areas through...

  1. Comparative study of the chemical composition of essential oils of five Tagetes species collected in Venezuela.

    Science.gov (United States)

    Armas, Kaylin; Rojas, Janne; Rojas, Luis; Morales, Antonio

    2012-09-01

    The leaves and inflorescences of five species of Tagetes, family Asteraceae, were collected from different locations in Mérida state, Venezuela, and their essential oils analyzed by GC and GC/MS. Several differences were observed in the composition of these oils, mainly regarding the major components, which for T. caracasana were trans-ocimenone (64.3%) and cis-tagetone (13.7%), and for T. erecta, piperitone (35.9%) and terpinolene (22.2%). High amounts of trans-anethole (87.5%) and estragole (10.7%) were observed in T. filifolia, while T. subulata essential oil contained terpinolene (26.0%), piperitenone (13.1%) and limonene (10.8%). For T. patula, two different oil samples were analyzed, leaves (TPL) and inflorescences (TPI). The TPL oil showed terpinolene (20.9%) and piperitenone (14.0%) as main components, while the TPI sample was composed mainly of beta-caryophyllene (23.7%), terpinolene (15.6%) and cis-beta-ocimene (15.5%). PMID:23074915

  2. Biofilm inhibition activity of compounds isolated from two Eunicea species collected at the Caribbean Sea

    Directory of Open Access Journals (Sweden)

    Yenny Martínez Díaz

    2015-12-01

    Full Text Available Abstract Biofilm has a primary role in the pathogenesis of diseases and in the attachment of multicellular organisms to a fouled surface. Because of that, the control of bacterial biofilms has been identified as an important target. In the present study, five lipid compounds isolated from soft coral Eunicea sp. and three terpenoids together with a mixture of sterols from Eunicea fusca collected at the Colombian Caribbean Sea showed different effectiveness against biofilm formation by three marine bacteria associated with immersed fouled surfaces, Ochrobactrum pseudogringnonense,Alteromona macleodii and Vibrio harveyi, and against two known biofilm forming bacteria, Pseudomonas aeruginosa ATCC 27853 and Staphylococcus aureus ATCC 25923. The pure compounds were characterized by NMR, HRESI-MS, HRGC-MS and optical rotation. The most effective compounds were batyl alcohol (1 and fuscoside E peracetate (6, acting against four strains without affecting their microbial growth. Compound 1 showed biofilm inhibition greater than 30% against A. macleodii, and up to 60% against O. pseudogringnonense,V. harveyi and S. aureus. Compound 6 inhibited O. pseudogringnonense and V. harveyi between 25 and 50%, and P. aeruginosa or S. aureus up to 60% at 0.5 mg/ml. The results suggest that these compounds exhibit specific biofilm inhibition with lower antimicrobial effect against the bacterial species assayed.

  3. Occurrence of Vibrio and Salmonella species in mussels (Mytilus galloprovincialis) collected along the Moroccan Atlantic coast.

    Science.gov (United States)

    Mannas, Hasna; Mimouni, Rachida; Chaouqy, Noureddine; Hamadi, Fatima; Martinez-Urtaza, Jaime

    2014-01-01

    This study reports the occurrence of different Vibrio and Salmonella species in 52 samples of Mytilus galloprovincialis collected from four sites along the Atlantic coast between Agadir and Essaouira (Anza, Cap Ghir, Imssouane and Essaouira). The level of Escherichia coli (E. coli) was also determined to evaluate the degree of microbial pollution in the investigated areas. In this study three methods were used : AFNOR NF EN ISO 6579 V08-013 for Salmonella spp., the provisional method routinely used by several laboratories (Institut Pasteur, Paris,…) for Vibrio cholerae and Vibrio parahaemolyticus in the seafood, and the most probable number method (MPN) using Norm ISO/TS 16649-3 (2005) for E. coli. The most frequently isolated Vibrios were Vibrio alginolyticus (90.4% of samples), followed by V. cholerae non O1 non O139 (15.4%) and V. parahaemolyticus (7.7%). Salmonella spp. was found in 15% of the samples. The number of E. coli ranged between 0.2/100 g and 1.8 10(3) /100 g of mussel soft tissues. This study indicates the potential sanitary risk associated with the presence of pathogenic bacteria in cultivated mussels in the two populous regions of southern Morocco, where shellfish production and maritime tourism are important to the local economy. PMID:24936389

  4. California dragonfly and damselfly (Odonata) database: temporal and spatial distribution of species records collected over the past century

    OpenAIRE

    Ball-Damerow, Joan E.; Oboyski, Peter T.; Resh, Vincent H

    2015-01-01

    Abstract The recently completed Odonata database for California consists of specimen records from the major entomology collections of the state, large Odonata collections outside of the state, previous literature, historical and recent field surveys, and from enthusiast group observations. The database includes 32,025 total records and 19,000 unique records for 106 species of dragonflies and damselflies, with records spanning 1879–2013. Records have been geographically referenced using the po...

  5. Heavy metal resistance in Arthrobacter ramosus strain G2 isolated from mercuric salt-contaminated soil

    International Nuclear Information System (INIS)

    Present study describes isolation of a multiple metal-resistant Arthrobacter ramosus strain from mercuric salt-contaminated soil. The isolate was found to resist and bioaccumulate several metals, such as cadmium, cobalt, zinc, chromium and mercury. Maximum tolerated concentrations for above metals were found to be 37, 525, 348, 1530 and 369 μM, respectively. The isolate could also reduce and detoxify redox-active metals like chromium and mercury, indicating that it has great potential in bioremediation of heavy metal-contaminated sites. Chromate reductase and mercuric reductase (MerA) activities in protein extract of the culture were found to be 2.3 and 0.17 units mg-1 protein, respectively. MerA enzyme was isolated from the culture by (NH4)2SO4 precipitation followed by dye affinity chromatography and its identity was confirmed by nano-LC-MS/MS. Its monomeric molecular weight, and optimum pH and temperature were 57 kDa, 7.4 and 55 deg. C, respectively. Thus, the enzyme was mildly thermophilic as compared to other MerA enzymes. Km and Vmax of the enzyme were 16.9 μM HgCl2 and 6.2 μmol min-1 mg-1 enzyme, respectively. The enzyme was found to be NADPH-specific. To our knowledge this is the first report on characterization of MerA enzyme from an Arthrobacter sp.

  6. Genetic differentiation of Arthrobacter population from heavy metal-contaminated environment

    Institute of Scientific and Technical Information of China (English)

    ZHANG Hanbo; REN Weimin; SHAO Qiyong; DUAN Changqun

    2007-01-01

    Six samples containing extremely high concentration of Pb,Zn,and Cd were obtained from the layers of 5-10 cm and 25-30 cm three tailing piles,with ages of about 10,20 and more than 80 years,respectively.Then,48 bacterial strains were obtained from these samples,and subsequently their phylogenetic positions were determined by analysis on the partial sequence of 16S rRNA gene (fragment length ranging from 474 to 708 bp).These isolates were members of the Arthrobacter genus,phylogenetically close to A.keyseri and A.ureafaciens,with sequence ranging from 99.1%to 100%.Furthermore,genetic variation between subpopulations from different samples was revealed by analysis on their randomly amplified polymorphic DNA profile.Nei genetic distance showed that the greatest differentiation occurred between subpopulation A and C.Notably,either genetic distance between subpopulations from the layers of 5-10 cm and 25-30 cm of each tailing pile or between same layers of different tailing pile increased with the history of tailings.Moreover,correlation analysis showed that soluble Pb has a significantly negative relationship with Nei'gene diversity of subpopulation.It was assumed that soluble Pb may be responsible for the reduced genetic diversity of the Arthrobacter population.Our data provided evidence that genetic differentiation of microbial populations was consistent with the changes of environmental factors,particularly heavy metals.

  7. Isolation of Indole Utilizing Bacteria Arthrobacter sp. and Alcaligenes sp. From Livestock Waste.

    Science.gov (United States)

    Kim, Minsu; Lee, Jin-Hyung; Kim, Eonmi; Choi, Hyukjae; Kim, Younghoon; Lee, Jintae

    2016-06-01

    Indole is an interspecies and interkingdom signaling molecule widespread in different environmental compartment. Although multifaceted roles of indole in different biological systems have been established, little information is available on the microbial utilization of indole in the context of combating odor emissions from different types of waste. The present study was aimed at identifying novel bacteria capable of utilizing indole as the sole carbon and energy source. From the selective enrichment of swine waste and cattle feces, we identified Gram-positive and Gram-negative bacteria belonging to the genera Arthrobacter and Alcaligenes. Bacteria belonging to the genus Alcaligenes showed higher rates of indole utilization than Arthrobacter. Indole at 1.0 mM for growth was completely utilized by Alcaligenes sp. in 16 h. Both strains produced two intermediates, anthranilic acid and isatin, during aerobic indole metabolism. These isolates were also able to grow on several indole derivatives. Interestingly, an adaptive response in terms of a decrease in cell size was observed in both strains in the presence of indole. The present study will help to explain the degradation of indole by different bacteria and also the pathways through which it is catabolized. Furthermore, these novel bacterial isolates could be potentially useful for the in situ attenuation of odorant indole and its derivatives emitted from different types of livestock waste. PMID:27570307

  8. New Report on Two Species of Hippolytid Shrimps (Crustacea: Decapoda: Caridea Collected at Sea Cucumber Farm, East Sea, Korea

    Directory of Open Access Journals (Sweden)

    Lee, Chu

    2014-04-01

    Full Text Available Two species of hippolytid shrimps, Eualus kuratai Miyake and Hayashi, 1967 and Heptacarpus igarashii Hayashi and Chiba, 1989, were collected at a sea cucumber farm from the East Sea. These species are described and illustrated for the first time in Korea. Eualus kuratai is closely related to E. middendorffi; however, it lacks a dorsomedian spine on the fourth and fifth abdominal somites. Heptacarpus igarashii can be easily distinguished from other Korean Heptacarpus species due to its short rostrum that lacks ventral teeth on margin. This report extends the previously known ranges from Japan and Korea. In Korea, both genera, Eualus and Heptacarpus, have seven species according to the present report, respectively; moreover, hippolytid shrimps now consist of 31 species of nine genera.

  9. One-pot conversion of levan prepared from Serratia levanicum NN to difructose anhydride IV by Arthrobacter nicotinovorans levan fructotransferase.

    Science.gov (United States)

    Kikuchi, Hiroto; Sakurai, Hiroaki; Nagura, Taizo; Aritsuka, Tsutomu; Tomita, Fusao; Yokota, Atsushi

    2010-03-01

    The newly established difructose anhydride IV (DFA IV) production system is comprised of the effective production of levan from sucrose by Serratia levanicum NN, the conversion of the levan into DFA IV by levan fructotransferase from Arthrobacter nicotinovorans GS-9, which is highly expressed in an Escherichiacoli transformant, and a practical purification step. The chemical properties of DFA IV were also investigated. PMID:20159571

  10. Transcriptional profiling of Gram-positive Arthrobacter in the phyllosphere: induction of pollutant degradation genes by natural plant phenolic compounds

    NARCIS (Netherlands)

    Scheublin, T.R.; Deusch, S.; Moreno-Forero, S.K.; Müller, J.A.; van der Meer, J.R.; Leveau, J.H.J.

    2014-01-01

    Arthrobacter chlorophenolicus A6 is a Gram-positive, 4-chlorophenol degrading soil bacterium that was recently shown to be an effective colonizer of plant leaf surfaces. The genetic basis for this phyllosphere competency is unknown. In this paper, we describe the genome-wide expression profile of A.

  11. Draft Genome Sequence of a Papaverine-Degrading, Gram-positive Arthrobacter sp., Isolated from Soil Near Hohenheim, Germany

    OpenAIRE

    Reznicek, Ondrej; Facey, Sandra J; Hauer, Bernhard

    2015-01-01

    We present the 4.8-Mb draft genome of a soil bacterium identified as Arthrobacter sp. This Gram-positive soil bacterium is able to use the aromatic compound papaverine as sole carbon source and will be examined for novel oxygenases.

  12. Distribution of Brown Blotch Bacteria in Wild and Cultivated Species of Basidiomycetes

    OpenAIRE

    Bessette, Alan E.

    1984-01-01

    Wild and cultivated Basidiomycetes species were cultured to determine the distribution of bacteria causing brown blotch disease of Agaricus bisporus. Colonies from each basidiocarp were screened for brown blotch organisms by the white line and host pathogenicity tests. Isolates causing brown blotch were identified as Pseudomonas tolaasi and an Arthrobacter species.

  13. Increased iron-stress resilience of maize through inoculation of siderophore-producing Arthrobacter globiformis from mine.

    Science.gov (United States)

    Sharma, Meenakshi; Mishra, Vandana; Rau, Nupur; Sharma, Radhey Shyam

    2016-07-01

    Iron deficiency is common among graminaceous crops. Ecologically successful wild grasses from iron-limiting habitats are likely to harbour bacteria which secrete efficient high-affinity iron-chelating molecules (siderophores) to solubilize and mobilize iron. Such siderophore-producing rhizobacteria may increase the iron-stress resilience of graminaceous crops. Considering this, 51 rhizobacterial isolates of Dichanthium annulatum from iron-limiting abandoned mine (∼84% biologically unavailable iron) were purified and tested for siderophore production; and efficacy of Arthrobacter globiformis inoculation to increase iron-stress resilience of maize and wheat was also evaluated. 16S rRNA sequence analyses demonstrated that siderophore-producing bacteria were taxonomically diverse (seven genera, nineteen species). Among these, Gram-positive Bacillus (eleven species) was prevalent (76.92%). A. globiformis, a commonly found rhizobacterium of graminaceous crops was investigated in detail. Its siderophore has high iron-chelation capacity (ICC: 13.0 ± 2.4 μM) and effectively dissolutes diverse iron-complexes (FeCl3 : 256.13 ± 26.56 μM/ml; Fe2 O3 red: 84.3 ± 4.74 μM/ml; mine spoil: 123.84 ± 4.38 μM/ml). Siderophore production (ICC) of A. globiformis BGDa404 also varied with supplementation of different iron complexes. In plant bioassay with iron-deficiency sensitive species maize, A. globiformis inoculation triggered stress-associated traits (peroxidase and proline) in roots, enhanced plant biomass, uptake of iron and phosphate, and protein and chlorophyll contents. However, in iron deficiency tolerant species wheat, growth improvement was marginal. The present study illustrates: (i) rhizosphere of D. annulatum colonizing abandoned mine as a "hotspot" of siderophore-producing bacteria; and (ii) potential of A. globiformis BGDa404 inoculation to increase iron-stress resilience in maize. A. globiformis BGDa404 has the potential to develop as

  14. Optimization of cultural conditions for growth associated chromate reduction by Arthrobacter sp. SUK 1201 isolated from chromite mine overburden

    International Nuclear Information System (INIS)

    Highlights: ► Isolation of a potent Cr(VI) resistant and reducing Arthrobacter SUK 1201 from chromite mine overburdens of Orissa, India. ► Phylogenetically (16S rDNA analysis), Arthrobacter SUK 1201 showed 99% nucleotide base pair similarity with Arthrobacter GZK-1. ► Production of insoluble chromium precipitates during chromate reduction under batch culture by the isolate SUK 1201. ► Confirmation of formation of insoluble chromium precipitate during reduction studies by EDX analysis. ► Optimization of cultural conditions for Cr(VI) reduction under batch culture leading to complete reduction of 2 mM of Cr(VI). - Abstract: Arthrobacter sp. SUK 1201, a chromium resistant and reducing bacterium having 99% sequence homology of 16S rDNA with Arthrobacter sp. GZK-1 was isolated from chromite mine overburden dumps of Orissa, India. The objective of the present study was to optimize the cultural conditions for chromate reduction by Arthrobacter sp. SUK 1201. The strain showed 67% reduction of 2 mM chromate in 7 days and was associated with the formation of green insoluble precipitate, which showed characteristic peak of chromium in to energy dispersive X-ray analysis. However, Fourier transform infrared spectra have failed to detect any complexation of end products of Cr(VI) reduction with the cell mass. Reduction of chromate increased with increased cell density and was maximum at 1010 cells/ml, but the reduction potential decreased with increase in Cr(VI) concentration. Chromate reducing efficiency was promoted when glycerol and glucose was used as electron donors. Optimum pH and temperature of Cr(VI) reduction was 7.0 and 35 °C respectively. The reduction process was inhibited by several metal ions and metabolic inhibitors but not by Cu(II) and DNP. These findings suggest that Arthrobacter sp. SUK 1201 has great promise for use in Cr(VI) detoxification under a wide range of environmental conditions.

  15. In situ collection of volatile silver species in a new modular quartz tube atomizer for atomic absorption spectrometry

    Czech Academy of Sciences Publication Activity Database

    Musil, Stanislav; Kratzer, Jan; Vobecký, Miloslav; Matoušek, Tomáš

    2012-01-01

    Roč. 27, č. 9 (2012), s. 1382-1390. ISSN 0267-9477 R&D Projects: GA ČR GA203/09/1783 Institutional support: RVO:68081715 Keywords : volatile species generation * in-situ collection * quartz tube atomizer Subject RIV: CB - Analytical Chemistry, Separation Impact factor: 3.155, year: 2012

  16. Antibacterial Activity of Extracts of Three Croton Species Collected in Mpumalanga Region in South Africa

    OpenAIRE

    Selowa, SC; Shai, LJ; Masoko, P; Mokgotho, MP; Magano, SR

    2009-01-01

    The antibacterial activities of three Croton species were compared using bioautography and the serial microdilution methods. The methanolic extracts of all the species had low activity against Escherichia coli. The highest activity was observed with Croton megalobotrys against Enterococcus faecalis with a minimal inhibitory concentration (MIC) value of 0.02 mg/ml. Croton steenkapianus extracts were the least active of the species investigated, only managing an MIC value of 0.625 mg/ml against...

  17. Evaluation of Antioxidant Activity of Crataegus species Collected from Different Regions of Turkey

    OpenAIRE

    Mustafa Özyürek; Mustafa Bener; Kubilay Güçlü; Ali A. Dönmez; Sevda Süzgeç-Selçuk; Sevda Pırıldar; Meriçli, Ali H; Reşat Apak

    2012-01-01

    Crataegus species (Rosaceae), known as “Howthorn” have found special medicinal use for the treatment of mild heart diseases. This work aims to measure the antioxidant capacities of various Crataegus species growing in Turkey . In this study, the flowers and leaves from 52 samples belonging to 17 taxa of 14 Crataegus species naturally growing in Turkey have been investigated for their antioxidant activity/capacity. Four different methods (CUPRAC, FRAP, ABTS/Persulfate and Folin: FCR assays) we...

  18. Reassessment of practical species identifications of the USDA Daucus carota germplasm collection: Morphological data

    Science.gov (United States)

    The genus Daucus includes about 20 species. The most widespread and economically important species, Daucus carota L., occurs on almost every continent. Cultivated carrot, subsp. sativus, has been selected from wild populations that are extremely diverse, especially in the western Mediterranean. Obli...

  19. Robustness and accuracy of Maxent niche modelling for Lactuca species distributions in light of collecting expeditions

    NARCIS (Netherlands)

    Cobben, M.M.P.; Treuren, van R.; Castaneda-Alvarez, N.P.; Khoury, C.K.; Kik, C.; Hintum, van T.J.L.

    2015-01-01

    Niche modelling software can be used to assess the probability of detecting a population of a plant species at a certain location. In this study, we used the distribution of the wild relatives of lettuce (Lactuca spp.) to investigate the applicability of Maxent species distribution models for collec

  20. A new species of Euchirella (fam. Aetideidae) from the "Dana"-collections (Copepoda, Calanoida)

    NARCIS (Netherlands)

    Vaupel-Klein, von J.C.

    1980-01-01

    SUMMARY Euchirella paulinae spec. nov. is described and illustrated in extenso ; various structures are outlined in detail for the first time. The external morphology of the new species is discussed with reference to the other species of the genus. Some brief remarks are made about the anatomical te

  1. Sapphire: a better material for atomization and in situ collection of silver volatile species for atomic absorption spectrometry

    Energy Technology Data Exchange (ETDEWEB)

    Musil, Stanislav, E-mail: stanomusil@biomed.cas.cz; Matoušek, Tomáš; Dědina, Jiří

    2015-06-01

    Sapphire is presented as a high temperature and corrosion resistant material of an optical tube of an atomizer for volatile species of Ag generated by the reaction with NaBH{sub 4}. The modular atomizer design was employed which allowed to carry out the measurements in two modes: (i) on-line atomization and (ii) in situ collection (directly in the optical tube) by means of excess of O{sub 2} over H{sub 2} in the carrier gas during the trapping step and vice versa in the volatilization step. In comparison with quartz atomizers, the sapphire tube atomizer provides a significantly increased atomizer lifetime as well as substantially improved repeatability of the Ag in situ collection signals shapes. In situ collection of Ag in the sapphire tube atomizer was highly efficient (> 90%). Limit of detection in the on-line atomization mode and in situ collection mode, respectively, was 1.2 ng ml{sup −1} and 0.15 ng ml{sup −1}. - Highlights: • Sapphire was tested as a new material of an atomizer tube for Ag volatile species. • Two measurement modes were investigated: on-line atomization and in situ collection. • In situ collection of Ag was highly efficient (> 90%) with LOD of 0.15 ng ml{sup −1}. • No devitrification of the sapphire tube observed in the course of several months.

  2. Zooplankton species identities, zooplankton species number per sample, and zooplankton abundance collected using zooplankton net as part of the California Cooperative Fisheries Investigation (CALCOFI) project, for 1994-03-01 (NODC Accession 9700104)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Zooplankton species identities, zooplankton species number per sample, and zooplankton abundance were collected from March 1, 1994 to March 1, 1994. Data were...

  3. Harvest Records for Game Species Collected at Morgan Brake National Wildlife Refuges in 1997 and 1998

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — These records were taken by Refuge employees at check stations between 1997 and 1998 involving archery, muzzle loading, and multiple game species

  4. The accidental release of exotic species from breeding colonies and zoological collections.

    Science.gov (United States)

    Barrat, J; Richomme, C; Moinet, M

    2010-04-01

    Exotic species have often been introduced into a new country in zoological or botanical gardens or on game and fur farms. When accidentally or deliberately released, these alien species can become invasive and have negative impacts on native plant and animal communities and human activities. This article focuses on a selection of such invasive species: principally the American mink (Neovison vison), but also the coypu (Myocastor coypus), muskrat (Ondatra zibethicus), raccoon dog (Nyctereutes procyonoides), raccoon (Procyon lotor) and African sacred ibis (Threskiornis aethiopicus). In each of these cases, the authors describe the biological characteristics and life history of the species, in relation to its invasive capacity, the origins and establishment of non-native populations, the environmental consequences and possible control measures. The main negative impacts observed are the destruction of habitat, the introduction and/or spread of pathogens and changes in the composition of native communities with consequent effects on biodiversity. PMID:20617652

  5. Zooplankton species identities collected from zooplankton net casts in Indian Ocean from 17 February 1960 to 23 July 1962 (NODC Accession 9400059)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Zooplankton species identities and other data were collected using zooplankton net casts in the Indian Ocean. Data were collected from 17 February 1960 to 23 July...

  6. Zooplankton species identities and other data collected by ATLANTIS II from net casts in NW Atlantic Ocean from 23 November 1988 to 04 December 1988 (NODC Accession 9500081)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Zooplankton species identities and other data were collected using net casts in the Northwest Atlantic Ocean from ATLANTIS II. Data were collected from 23 November...

  7. Zooplankton species identities and other data collected from zooplankton net casts in the NE Atlantic Ocean from DISCOVERY; 12 November 1969 to 01 July 1988 (NODC Accession 9500097)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Zooplankton species identities and other data were collected by DISCOVERY using zooplankton net casts in the Northeast Atlantic Ocean. Data were collected from 12...

  8. Detection of inter-species contaminations in a cell line collection using isoenzymes and molecular markers

    Directory of Open Access Journals (Sweden)

    M. Ferarri

    2011-03-01

    Full Text Available As in human research, also in livestock species the use of continuous cell cultures is an important tool for the study of physiological and tissue developmental processes, as well as for immunological, virological and toxicological assays. This widespread use of animal cell cultures needs that quality control tests are systematically performed in order to evaluate the authenticity of the cells used. Cell cross-contamination (CCC can occur with cells from other species (interspecies contamination or with unrelated cells from the same species (intraspecies contamination. Several methods have been used to identify inter- and intraspecies CCC: isoenzyme profile (Nims, 1998, cytogenetic analysis (Macville et al., 1996, DNA fingerprinting (Stacey et al., 1992, and, more recently, PCR-based methods (Matsuo et al., 1999. Amplified Fragment Length Polymorphism (AFLP technology is a PCR-based technique (Vos et al., 1995 able to reveal polymorphism, with no need of prior sequence information or probe isolation..........

  9. Chemical composition and digestibility of some browse plant species collected from Algerian arid rangelands

    Energy Technology Data Exchange (ETDEWEB)

    Boufennara, S.; Lopez, S.; Boussebouna, H.; Bodas, R.; Bouazza, L.

    2012-11-01

    Many wild browse and bush species are undervalued mainly because of insufficient knowledge about their potential feeding value. The objective was to evaluate some nutritional attributes of various Algerian browse and shub species (Atriplex halimus, Artemisia campestris, Artemisia herba-alba, Astragalus gombiformis, Calobota saharae, Retama raetam, Stipagrostis pungens, Lygeum spartum and Stipa tenacissima). Chemical composition, phenols and tannins concentration, in vitro digestibility, in vitro gas production kinetics and in vitro bio-assay for assessment of tannins using buffered rumen fluid, and in situ disappearence of the edible parts of the plants (leaves, thin twigs and flowers) were determined. In general, protein content in dicotyledon species was always greater than in monocotyledon grasses, these showing higher neutral and acid detergent fibre and lower lignin contents than dicots. The tannin concentrations varied considerably between species, but in general the plants investigated in this study had low tannin contents (except for Artemisia spp. and S. tenacissima). Monocots showed lower in vitro and in situ digestibilities, fermentation rate, cumulative gas production and extent of degradation than dicot species. The plants were clustered by principal components analysis in two groups: poor-quality grasses and the most digestible dicot species. Chemical composition (neutral detergent fibre and protein) and digestibility were the main influential variables determining the ranking. In conclusion, A. halimus, A. campestris, A. herba-alba and A. gombiformis can be considered of greater nutritional value than the highly fibrous and low digestible grasses (S. pungens, L. spartum and S. tenacissima) that should be considered emergency roughages. (Author) 46 refs.

  10. A polyphasic approach for characterization of a collection of cereal isolates of the Fusarium incarnatum-equiseti species complex.

    Science.gov (United States)

    Villani, Alessandra; Moretti, Antonio; De Saeger, Sarah; Han, Zheng; Di Mavungu, Jose Diana; Soares, Célia M G; Proctor, Robert H; Venâncio, Armando; Lima, Nelson; Stea, Gaetano; Paciolla, Costantino; Logrieco, Antonio F; Susca, Antonia

    2016-10-01

    DNA-based phylogenetic analyses have resolved the fungal genus Fusarium into multiple species complexes. The F. incarnatum-equiseti species complex (FIESC) includes fusaria associated with several diseases of agriculturally important crops, including cereals. Although members of FIESC are considered to be only moderately aggressive, they are able to produce a diversity of mycotoxins, including trichothecenes, which can accumulate to harmful levels in cereals. High levels of cryptic speciation have been detected within the FIESC. As a result, it is often necessary to use approaches other than morphological characterization to distinguish species. In the current study, we used a polyphasic approach to characterize a collection of 69 FIESC isolates recovered from cereals in Europe, Turkey, and North America. In a species phylogeny inferred from nucleotide sequences from four housekeeping genes, 65 of the isolates were resolved within the Equiseti clade of the FIESC, and four isolates were resolved within the Incarnatum clade. Seven isolates were resolved as a genealogically exclusive lineage, designated here as FIESC 31. Phylogenies based on nucleotide sequences of trichothecene biosynthetic genes and MALDI-TOF MS (Matrix-Assisted Laser Desorption/Ionization Time-Of-Flight Mass Spectrometry) were largely concordant with phylogeny inferred from the housekeeping gene. Finally, Liquid Chromatography (Time-Of-Flight) Mass Spectrometry [LC-(TOF-)MS(/MS)] revealed variability in mycotoxin production profiles among the different phylogenetic species investigated in this study. PMID:27376677

  11. Informing Species Conservation at Multiple Scales Using Data Collected for Marine Mammal Stock Assessments

    OpenAIRE

    Alana Grech; James Sheppard; Helene Marsh

    2011-01-01

    BACKGROUND: Conservation planning and the design of marine protected areas (MPAs) requires spatially explicit information on the distribution of ecological features. Most species of marine mammals range over large areas and across multiple planning regions. The spatial distributions of marine mammals are difficult to predict using habitat modelling at ecological scales because of insufficient understanding of their habitat needs, however, relevant information may be available from surveys con...

  12. Application of zeolite-Arthrobacter viscosus system for the removal of heavy metal and dye : chromium and azure B

    OpenAIRE

    Rosales, E.; Pazos, M.; Sanromán, M. A.; Tavares, M. T.

    2012-01-01

    A hybrid system combining the ion-exchange properties of a NaY zeolite and the characteristics of the bacterium Arthrobacter viscosus was investigated to treat polluted effluents with dye and toxic metals. In this study, the dye and the metal ion employed were a thiazine dye, Azure B, and chromium (VI), respectively. Initially, the removal of dye by the zeolite was tested. The analysis of dye equilibrium isotherms data was done using Langmuir, Freundlich, Sips and Redlich–Peterson models. Red...

  13. Low temperature reduction of hexavalent chromium by a microbial enrichment consortium and a novel strain of Arthrobacter aurescens

    Directory of Open Access Journals (Sweden)

    Thompson Vicki S

    2006-01-01

    Full Text Available Abstract Background Chromium is a transition metal most commonly found in the environment in its trivalent [Cr(III] and hexavalent [Cr(VI] forms. The EPA maximum total chromium contaminant level for drinking water is 0.1 mg/l (0.1 ppm. Many water sources, especially underground sources, are at low temperatures (less than or equal to 15 Centigrade year round. It is important to evaluate the possibility of microbial remediation of Cr(VI contamination using microorganisms adapted to these low temperatures (psychrophiles. Results Core samples obtained from a Cr(VI contaminated aquifer at the Hanford facility in Washington were enriched in Vogel Bonner medium at 10 Centigrade with 0, 25, 50, 100, 200, 400 and 1000 mg/l Cr(VI. The extent of Cr(VI reduction was evaluated using the diphenyl carbazide assay. Resistance to Cr(VI up to and including 1000 mg/l Cr(VI was observed in the consortium experiments. Reduction was slow or not observed at and above 100 mg/l Cr(VI using the enrichment consortium. Average time to complete reduction of Cr(VI in the 30 and 60 mg/l Cr(VI cultures of the consortium was 8 and 17 days, respectively at 10 Centigrade. Lyophilized consortium cells did not demonstrate adsorption of Cr(VI over a 24 hour period. Successful isolation of a Cr(VI reducing organism (designated P4 from the consortium was confirmed by 16S rDNA amplification and sequencing. Average time to complete reduction of Cr(VI at 10 Centigrade in the 25 and 50 mg/l Cr(VI cultures of the isolate P4 was 3 and 5 days, respectively. The 16S rDNA sequence from isolate P4 identified this organism as a strain of Arthrobacter aurescens, a species that has not previously been shown to be capable of low temperature Cr(VI reduction. Conclusion A. aurescens, indigenous to the subsurface, has the potential to be a predominant metal reducer in enhanced, in situ subsurface bioremediation efforts involving Cr(VI and possibly other heavy metals and radionuclides.

  14. Characterization of the in vitro assembly of FtsZ in Arthrobacter strain A3 using light scattering.

    Science.gov (United States)

    Yang, Fan; Zhang, Shanshan; Ding, Shenglong; Hou, Yannan; Yu, Linghui; Chen, Ximing; Xiao, Jianxi

    2016-10-01

    The self-assembly of FtsZ, the bacterial homolog of tubulin, plays an essential role in cell division. Light scattering technique is applied to real-time monitor the in vitro assembly of FtsZ in Arthrobacter strain A3, a newly isolated psychrotrophic bacterium. The critical concentration needed for the assembly is estimated as 6.7μM. The polymerization of FtsZ in Arthrobacter strain A3 requires both GTP and divalent metal ions, while salt is an unfavorable condition for the assembly. The FtsZ polymerizes under a wide range of pHs, with the fastest rate around pH 6.0. The FtsZ from Arthrobacter strain A3 resembles Mycobacterium tuberculosis FtsZ in terms of the dependence on divalent metal ions and the slow polymerization rate, while it is different from M. tuberculosis FtsZ considering the sensitivity to salt and pH. The comparison of FtsZ from different organisms will greatly advance our understanding of the biological role of the key cell division protein. PMID:27164494

  15. s-triazine degrading bacterial isolate Arthrobacter sp. AK-YN10, a candidate for bioaugmentation of atrazine contaminated soil.

    Science.gov (United States)

    Sagarkar, Sneha; Bhardwaj, Pooja; Storck, Veronika; Devers-Lamrani, Marion; Martin-Laurent, Fabrice; Kapley, Atya

    2016-01-01

    The Arthrobacter sp. strain AK-YN10 is an s-triazine pesticide degrading bacterium isolated from a sugarcane field in Central India with history of repeated atrazine use. AK-YN10 was shown to degrade 99 % of atrazine in 30 h from media supplemented with 1000 mg L(-1) of the herbicide. Draft genome sequencing revealed similarity to pAO1, TC1, and TC2 catabolic plasmids of the Arthrobacter taxon. Plasmid profiling analyses revealed the presence of four catabolic plasmids. The trzN, atzB, and atzC atrazine-degrading genes were located on a plasmid of approximately 113 kb.The flagellar operon found in the AK-YN10 draft genome suggests motility, an interesting trait for a bioremediation agent, and was homologous to that of Arthrobacter chlorophenolicus. The multiple s-triazines degradation property of this isolate makes it a good candidate for bioremediation of soils contaminated by s-triazine pesticides. PMID:26403923

  16. A biogeographic analysis of the species Fragaria vesca using microsatellite markers on a worldwide plant collection

    OpenAIRE

    Hrannar Smári Hilmarsson 1984

    2015-01-01

    The woodland strawberry, Fragaria vesca L., has the widest distribution of its genus. It can be found across North-America, all over Europe and into Asia. F. vesca has become an important research model benefitting from its small genome as well as both easy propogation and maintainance. A vast collection and research on natural variation is imperative to the advancement of research in the field of the Rosa (Rosaceae) plant family, the third most economically important of all pl...

  17. A method for the production of D-tagatose using a recombinant Pichia pastoris strain secreting β-D-galactosidase from Arthrobacter chlorophenolicus and a recombinant L-arabinose isomerase from Arthrobacter sp. 22c

    Directory of Open Access Journals (Sweden)

    Wanarska Marta

    2012-08-01

    Full Text Available Abstract Background D-Tagatose is a natural monosaccharide which can be used as a low-calorie sugar substitute in food, beverages and pharmaceutical products. It is also currently being tested as an anti-diabetic and obesity control drug. D-Tagatose is a rare sugar, but it can be manufactured by the chemical or enzymatic isomerization of D-galactose obtained by a β-D-galactosidase-catalyzed hydrolysis of milk sugar lactose and the separation of D-glucose and D-galactose. L-Arabinose isomerases catalyze in vitro the conversion of D-galactose to D-tagatose and are the most promising enzymes for the large-scale production of D-tagatose. Results In this study, the araA gene from psychrotolerant Antarctic bacterium Arthrobacter sp. 22c was isolated, cloned and expressed in Escherichia coli. The active form of recombinant Arthrobacter sp. 22c L-arabinose isomerase consists of six subunits with a combined molecular weight of approximately 335 kDa. The maximum activity of this enzyme towards D-galactose was determined as occurring at 52°C; however, it exhibited over 60% of maximum activity at 30°C. The recombinant Arthrobacter sp. 22c L-arabinose isomerase was optimally active at a broad pH range of 5 to 9. This enzyme is not dependent on divalent metal ions, since it was only marginally activated by Mg2+, Mn2+ or Ca2+ and slightly inhibited by Co2+ or Ni2+. The bioconversion yield of D-galactose to D-tagatose by the purified L-arabinose isomerase reached 30% after 36 h at 50°C. In this study, a recombinant Pichia pastoris yeast strain secreting β-D-galactosidase Arthrobacter chlorophenolicus was also constructed. During cultivation of this strain in a whey permeate, lactose was hydrolyzed and D-glucose was metabolized, whereas D-galactose was accumulated in the medium. Moreover, cultivation of the P. pastoris strain secreting β-D-galactosidase in a whey permeate supplemented with Arthrobacter sp. 22c L-arabinose isomerase resulted in a 90% yield

  18. Fusarium species isolated from Pennisetum clandestinum collected during outbreaks of kikuyu poisoning in cattle in South Africa

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    Christo J. Botha

    2014-02-01

    Full Text Available Kikuyu poisoning occurs sporadically in South Africa. It is of major economic importance, as valuable dairy cows are often poisoned by it, and once affected, the mortality rate is high. Pennisetum clandestinum samples were collected during eight outbreaks of kikuyu poisoning in cattle in the Eastern Cape Province of South Africa from 2008 to 2010. The kikuyu grass samples were submitted specifically for the isolation and molecular identification of Fusarium species, as it was recently suggested that mycotoxins synthesised by Fusarium torulosum could be the cause of this intoxication. Ninety-four Fusarium isolates were retrieved from the grass samples, of which 72 were members of the Fusarium incarnatum/Fusarium equiseti species complex based on morphology and phylogenetic analyses of the translation elongation factor 1α sequence data. The South African isolates from kikuyu identified as members of the F. incarnatum/F. equiseti species complex grouped together in six separate clades. The other isolates were Fusarium culmorum (n = 3, Fusarium redolens (n = 4 and Fusarium oxysporum (n = 15. Although F. torulosum could not be isolated from P. clandestinum collected during kikuyu poisoning outbreaks in South Africa, the mycotoxicosis theory is still highly plausible.

  19. Variations in the Microcystin Content of Different Fish Species Collected from a Eutrophic Lake

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    Mylynda Shaskus

    2013-05-01

    Full Text Available Microcystins produced from cyanobacteria can accumulate in fish tissues. Liquid chromatography coupled with tandem quadrupole mass spectrometry (LC-MS/MS is an attractive alternative to immunoassays for the determination of low concentrations of microcystins in tissues. Fish taken from Grand Lake St. Marys, a eutrophic lake in Ohio, USA, were analyzed for microcystin-LR in their fillets using LC-MS/MS. Of 129 fish tested for microcystins, only black crappie (Pomoxis nigromaculatus and common carp (Cyprinus carpio tested positive for microcystin-LR. Less than 10% of Pomoxis and 7% of Cyprinus samples contained measurable levels of microcystin-LR. Statistical analysis yielded a p-value of 0.07 between Pomoxis and the pooled results of the other four fish species. However, this comparison was complicated by the large difference in sample size between species. Further sampling in Grand Lake St. Marys for microcystin-LR would help determine if microcystin-LR exposure occurs through foodweb transfer.

  20. Molecular identification and antifungal susceptibility profiles of Candida parapsilosis complex species isolated from culture collection of clinical samples

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    Fábio Silvestre Ataides

    2015-08-01

    Full Text Available AbstractINTRODUCTION:Candida parapsilosis is a common yeast species found in cases of onychomycosis and candidemia associated with infected intravascular devices. In this study, we differentiated Candida parapsilosis sensu stricto, Candida orthopsilosis , and Candida metapsilosis from a culture collection containing blood and subungual scraping samples. Furthermore, we assessed the in vitro antifungal susceptibility of these species to fluconazole, itraconazole, voriconazole, posaconazole, amphotericin B, and caspofungin.METHODS:Differentiation of C. parapsilosis complex species was performed by amplification of the secondary alcohol dehydrogenase (SADH gene and digestion by the restriction enzyme Ban I. All isolates were evaluated for the determination of minimal inhibitory concentrations using Etest, a method for antifungal susceptibility testing.RESULTS:Among the 87 isolates, 78 (89.7% were identified as C. parapsilosis sensu stricto , five (5.7% were identified as C. orthopsilosis , and four (4.6% were identified as C. metapsilosis . Analysis of antifungal susceptibility showed that C. parapsilosis sensu strictoisolates were less susceptible to amphotericin B and itraconazole. One C. parapsilosis sensu stricto isolate was resistant to amphotericin B and itraconazole. Moreover, 10.2% of C. parapsilosis sensu stricto isolates were resistant to caspofungin. Two C. parapsilosis sensu strictoisolates and one C. metapsilosis isolate were susceptible to fluconazole in a dose-dependent manner.CONCLUSIONS:We reported the first molecular identification of C. parapsilosiscomplex species in State of Goiás, Brazil. Additionally, we showed that although the three species exhibited differences in antifungal susceptibility profiles, the primary susceptibility of this species was to caspofungin.

  1. California dragonfly and damselfly (Odonata database: temporal and spatial distribution of species records collected over the past century

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    Joan E. Ball-Damerow

    2015-02-01

    Full Text Available The recently completed Odonata database for California consists of specimen records from the major entomology collections of the state, large Odonata collections outside of the state, previous literature, historical and recent field surveys, and from enthusiast group observations. The database includes 32,025 total records and 19,000 unique records for 106 species of dragonflies and damselflies, with records spanning 1879–2013. Records have been geographically referenced using the point-radius method to assign coordinates and an uncertainty radius to specimen locations. In addition to describing techniques used in data acquisition, georeferencing, and quality control, we present assessments of the temporal, spatial, and taxonomic distribution of records. We use this information to identify biases in the data, and to determine changes in species prevalence, latitudinal ranges, and elevation ranges when comparing records before 1976 and after 1979. The average latitude of where records occurred increased by 78 km over these time periods. While average elevation did not change significantly, the average minimum elevation across species declined by 108 m. Odonata distribution may be generally shifting northwards as temperature warms and to lower minimum elevations in response to increased summer water availability in low-elevation agricultural regions. The unexpected decline in elevation may also be partially the result of bias in recent collections towards centers of human population, which tend to occur at lower elevations. This study emphasizes the need to address temporal, spatial, and taxonomic biases in museum and observational records in order to produce reliable conclusions from such data.

  2. California dragonfly and damselfly (Odonata) database: temporal and spatial distribution of species records collected over the past century.

    Science.gov (United States)

    Ball-Damerow, Joan E; Oboyski, Peter T; Resh, Vincent H

    2015-01-01

    The recently completed Odonata database for California consists of specimen records from the major entomology collections of the state, large Odonata collections outside of the state, previous literature, historical and recent field surveys, and from enthusiast group observations. The database includes 32,025 total records and 19,000 unique records for 106 species of dragonflies and damselflies, with records spanning 1879-2013. Records have been geographically referenced using the point-radius method to assign coordinates and an uncertainty radius to specimen locations. In addition to describing techniques used in data acquisition, georeferencing, and quality control, we present assessments of the temporal, spatial, and taxonomic distribution of records. We use this information to identify biases in the data, and to determine changes in species prevalence, latitudinal ranges, and elevation ranges when comparing records before 1976 and after 1979. The average latitude of where records occurred increased by 78 km over these time periods. While average elevation did not change significantly, the average minimum elevation across species declined by 108 m. Odonata distribution may be generally shifting northwards as temperature warms and to lower minimum elevations in response to increased summer water availability in low-elevation agricultural regions. The unexpected decline in elevation may also be partially the result of bias in recent collections towards centers of human population, which tend to occur at lower elevations. This study emphasizes the need to address temporal, spatial, and taxonomic biases in museum and observational records in order to produce reliable conclusions from such data. PMID:25709531

  3. Toxicity screening of soils from different mine areas—A contribution to track the sensitivity and variability of Arthrobacter globiformis assay

    Energy Technology Data Exchange (ETDEWEB)

    Marques, Catarina R., E-mail: crmarques@ua.pt [Departamento de Biologia and CESAM (Centro de Estudos do Ambiente e do Mar), Universidade de Aveiro, Campus Universitário de Santiago, 3810-193 Aveiro (Portugal); Caetano, Ana L. [Departamento de Biologia and CESAM (Centro de Estudos do Ambiente e do Mar), Universidade de Aveiro, Campus Universitário de Santiago, 3810-193 Aveiro (Portugal); Haller, Andreas [ECT Oekotoxikologie GmbH, Böttgerstraße 2–14, D-65439 Flörsheim a. M. (Germany); Gonçalves, Fernando [Departamento de Biologia and CESAM (Centro de Estudos do Ambiente e do Mar), Universidade de Aveiro, Campus Universitário de Santiago, 3810-193 Aveiro (Portugal); Pereira, Ruth [Faculdade de Ciências da Universidade do Porto, Rua do Campo Alegre, s/n, 4169-007 Porto (Portugal); Interdisciplinary Centre of Marine and Environmental Research (CIIMAR/CIMAR), Universidade do Porto, Rua dos Bragas 289, P 4050-123 Porto (Portugal); Römbke, Jörg [ECT Oekotoxikologie GmbH, Böttgerstraße 2–14, D-65439 Flörsheim a. M. (Germany)

    2014-06-01

    Highlights: • The assay gave rapid and feasible discrimination of toxic soils to A. globiformis. • Sensitive and low variability response to soils from different regions. • Soil properties may interfere with metal toxicity and fluorescence measurements. • Proposal of a toxicity threshold for the contact assay regarding soils. • A. globiformis assay should be included in the Tier I of risk assessment frameworks. - Abstract: This study used the Arthrobacter globiformis solid-contact test for assessing the quality of soils collected in areas subjected to past and present mine activities in Europe (uranium mine, Portugal) and North Africa (phosphogypsum pile, Tunisia; iron mine, Morocco). As to discriminate the influence of soils natural variability from the effect of contaminants, toxicity thresholds were derived for this test, based on the dataset of each study area. Furthermore, the test sensitivity and variability was also evaluated. As a result, soils that inhibited A. globiformis dehydrogenase activity above 45% or 50% relatively to the control, were considered to be toxic. Despite the soil metal content determined, the properties of soils seemed to influence dehydrogenase activity. Overall, the contact test provided a coherent outcome comparing to other more time-consuming and effort-demanding ecotoxicological assays. Our results strengthened the feasibility and ecological relevance of this assay, which variability was quite reduced hence suggesting its potential integration within the test battery of tier 1 of soil risk assessment schemes.

  4. A review of the Palaearctic species of Larinus Dejean (Coleoptera: Curculionidae in C. J. Schoenherr collection: nomenclature and lectotype designations

    Directory of Open Access Journals (Sweden)

    Levent Gültekin

    2015-06-01

    Full Text Available The syntypes of 41 species of Larinus Dejean described by L. Gyllenhal and C. H. Boheman, housed at the C. J. Schoenherr collection in the Swedish Museum of Natural History, Stockholm and the Museum of Evolution, Uppsala University, are examined. Lectotypes are designated, a nomenclatural review performed, many previous synonyms confirmed and three new synonyms proposed: Larinus planus (Fabricius, 1792 (= Larinus rusticanus Gyllenhal, 1835 syn. nov.; Larinus carlinae (Olivier, 1807 (= Larinus sulphurifer Boheman, 1843 syn. nov.; Larinus minutus Gyllenhal, 1835 (= Larinus puncticollis Capiomont, 1874 syn. nov.. Colour images for 15 lectotypes are presented.

  5. RETROSPECTIVE INVESTIGATION OF CATARACT MANAGEMENT IN AVIAN SPECIES IN A ZOOLOGIC COLLECTION.

    Science.gov (United States)

    Rainwater, Kimberly L; Sykes, John M; Sapienza, John S

    2015-12-01

    A review of avian cataracts at the Wildlife Conservation Society's Bronx Zoo between 1992 and 2011 was conducted. Ninety cataracts in 54 birds from 42 species were identified. Cataracts were found primarily during examination for ocular abnormalities (29/54, 53.7%) or opportunistically (13/54, 24.1%) and were most commonly diagnosed as mature (22/90, 24.4%). Systemic medical conditions diagnosed in these birds included West Nile virus (4/54, 7.4%), head trauma (3/54, 5.6%), plumbism and Salmonella Pullorum (1/54, 1.9%), Marek's disease (1/54, 1.9%), leukocytosis (1/54, 1.9%), and hyperglycemia (1/54, 1.9%). Cataracts were progressive in seven birds of four species. Unilateral enucleation was performed in 2/54 (3.7%) birds, and 12/54 (22.2%) underwent cataract removal (phacoemulsification in 16 eyes and standard extracapsular cataract extraction in 2 eyes). Concurrent ocular abnormalities, such as corneal scarring and lens-induced uveitis, were seen in 2/18 (11.1%) eyes preoperatively in the group undergoing cataract removal, 2/2 (100%) eyes preoperatively in the group undergoing enucleation, and 33/70 (47.1%) of eyes that did not undergo surgery. For birds undergoing cataract removal, complications included successfully treated cardiorespiratory arrest intraoperatively (1/12, 8.3%) as well as postanesthetic complications of acute respiratory distress and tracheal stricture (2/12, 16.7%). The most common postoperative ocular abnormalities included posterior capsular opacity (4/18 eyes, 22.2%) and corneal scarring (2/18 eyes, 11.1%). Lens cortical regrowth and marked posterior lens capsular opacity occurred in one eye of one bird after phacoemulsification, necessitating a second ocular surgery. A successful outcome, as determined by improved postoperative visual acuity, was seen in 10/12 (83.3%) birds undergoing cataract removal, and 5/12 (41.7%) of these birds were alive >3 yr after surgery. The results of this review will aid clinicians in identifying common stages

  6. Metabolic pathway for degradation of 2-chloro-4-aminophenol by Arthrobacter sp. SPG.

    Science.gov (United States)

    Arora, Pankaj Kumar; Mohanta, Tapan Kumar; Srivastava, Alok; Bae, Hanhong; Singh, Vijay Pal

    2014-01-01

    A degradation pathway of 2-chloro-4-aminophenol (2C4AP) was studied in an Arthrobacter sp. SPG that utilized 2C4AP as its sole source of carbon and energy. The 2C4AP degradation was initiated by a 2C4AP-deaminase that catalyzed the conversion of 2C4AP into chlorohydroquinone (CHQ) with removal of ammonium ion. In the next step, a CHQ-dehalogenase dehalogenated CHQ to hydroquinone (HQ) that cleaved into γ-hydroxymuconic semialdehyde by a HQ-dioxygenase. The 2C4AP degradation was also investigated in sterile and non-sterile soil microcosms using strain SPG. The results show that the SPG cells degraded 2C4AP more rapidly in sterile soil than non-sterile soil. Our studies showed that strain SPG may be used for bioremediation of 2C4AP-contaminated sites. This is the first report of the 2C4AP degradation by any bacteria. PMID:25427856

  7. Genetic analysis of phenylacetic acid catabolism in Arthrobacter oxydans CECT386.

    Science.gov (United States)

    Navarro-Llorens, Juana María; Drzyzga, Oliver; Perera, Julián

    2008-07-01

    Arthrobacter oxydans CECT386 is a Gram-positive bacterium able to use either phenylacetic acid or phenylacetaldehyde as the sole carbon and energy source for aerobic growth. Genes responsible for the catabolism of these compounds have been located at two chromosomal regions and were organized in one isolated paaN gene and two putative paa operons, one consisting of the paaD, paaF, tetR and prot genes, and one consisting of the paaG, paaH, paaI, paaJ, paaK and paaB genes. The identity of the paaF and paaN genes was supported by functional complementation experiments. A comparison with the paa catabolic genes and/or gene clusters of other bacteria that degrade these aromatic compounds is presented. The results of this study broaden the knowledge regarding the range of metabolic potential of this strain and eventually make it attractive for environmental applications. PMID:18437357

  8. IN-VITRO BIOREDUCTION OF HEXAVALENT CHROMIUM BY VIABLE WHOLE CELLS OF Arthrobacter sp. SUK 1201

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    Satarupa Dey

    2014-08-01

    Full Text Available A chromium resistant and reducing bacterium Arthrobacter sp. SUK 1201 was isolated from chromite mine overburden dumps of Orissa, India. Viable whole cells of this isolate was capable of completely reducing 100 µM Cr(VI in chemically defined MS medium within 28 h of incubation under batch cultivation. Reduction of chromate increased with increased cell density and was maximum at a density of 1010 cells/ml, but the reduction potential of the suspended cells decreased with increase in Cr(VI concentration in the medium. Chromate reducing efficiency was promoted when glycerol and glucose was used as electron donors, while the optimum pH and temperature of Cr(VI reduction was found to be 7.0 and 35°C respectively. The reduction process was inhibited by divalent cations Ni, Co and Cd, but not by Cu and Fe. Similarly, carbonyl cyanide m-chlorophenylhydrazone (CCCP, N,N,-Di cyclohexyl carboiimide (DCC, sodium azide and sodium fluoride were inhibitory to chromate reduction, while in presence of 2,4 dinitrophenol (2,4 DNP chromate reduction by SUK 1201 cells remained unaffected.

  9. The rhizobacterium Arthrobacter agilis produces dimethylhexadecylamine, a compound that inhibits growth of phytopathogenic fungi in vitro.

    Science.gov (United States)

    Velázquez-Becerra, Crisanto; Macías-Rodríguez, Lourdes I; López-Bucio, José; Flores-Cortez, Idolina; Santoyo, Gustavo; Hernández-Soberano, Christian; Valencia-Cantero, Eduardo

    2013-12-01

    Plant diseases caused by fungal pathogens such as Botrytis cinerea and the oomycete Phytophthora cinnamomi affect agricultural production worldwide. Control of these pests can be done by the use of fungicides such as captan, which may have deleterious effects on human health. This study demonstrates that the rhizobacterium Arthrobacter agilis UMCV2 produces volatile organic compounds that inhibit the growth of B. cinerea in vitro. A single compound from the volatile blends, namely dimethylhexadecylamine (DMHDA), could inhibit the growth of both B. cinerea and P. cinnamomi when supplied to the growth medium in low concentrations. DMHDA also inhibited the growth of beneficial fungi Trichoderma virens and Trichoderma atroviride but at much higher concentrations. DMHDA-related aminolipids containing 4, 8, 10, 12, and 14 carbons in the alkyl chain were tested for their inhibitory effect on the growth of the pathogens. The results show that the most active compound from those tested was dimethyldodecylamine. This effect correlates with a decrease in the number of membrane lipids present in the mycelium of the pathogen including eicosanoic acid, (Z)-9-hexadecenoic acid, methyl ester, and (Z)-9-octadecenoic acid, methyl ester. Strawberry leaflets treated with DMHDA were not injured by the compound. These data indicate that DMHDA and related compounds, which can be produced by microorganisms may effectively inhibit the proliferation of certain plant pathogens. PMID:23674267

  10. Chromate reduction by Arthrobacter CR47 in biofilm packed bed reactors

    International Nuclear Information System (INIS)

    Bacterial strain Cr47 was isolated from a landfarming process soil sample. It was identified, by 16s rDNA sequencing, as Arthrobacter sp. The time course of the Cr(VI) reduction was monitored in batch operated packed bed biofilm reactors (12mL void volume) and in recirculating packed bed biofilm reactors (100 mL void volume) inoculated with bacterial strain Cr47. The reduction was evaluated with, 30 mg L-1 Cr(VI) laboratory solutions prepared with K2Cr2O7 and enriched with glucose-minimal medium, and with 30 mg L-1 Cr(VI) industrial model solutions prepared with chrome plating waste waters enriched with sucrose-minimal medium. Under batch mode the reduction reaction by the biofilm seemed to fit well an exponential-decay model with a first order kinetic parameter of 0.071 mg(L h)-1 Cr(VI). In the recirculating reactor, monitored after 4 weeks from inoculation and fed with laboratory solutions the removal rate was 0.79 mg(L h)-1. In the reactor fed with the industrial model solutions the maximum Cr(VI) removal rate attained was 0.49 mg(L h)-1. Artrobacter sp. packed bed biofilm reactors achieved Cr(VI) reduction rates comparable to other aerobic and anaerobic fixed film bioreactors previously reported

  11. Soluble species in aerosols collected on the route of the Second Chinese National Arctic Research Expedition

    Institute of Scientific and Technical Information of China (English)

    Xu Jianzhong; Sun Junying; Ren Jiawen; Qin Dahe

    2005-01-01

    Aerosol samples are collected on the route of the Second Chinese National Arctic Research Expedition from July 15 to September 28, 2003. The concentration of water soluble ions (Na+, NH4+, Ca2+, CI-, MSA , SO42- and so on) are analyzed. By correlation analysis, the ions can be divided into three groups: ( 1 ) Na + ,Mg2+ , K + , Ca2 + , Cl- , SO42 - , mainly from sea salt; (2) NH4+ , NO3- , markedly from coastal regions of the continents ; (3) Acetate, MSA, C2042-, from other sources. Marine aerosols are the dominant origin, Cl- and Na + are the most dominant anion and cation, respectively and these two ions ( Na + + Cl - ) account for 55.6% of the total aerosol loading. The mean equivalence ratio of NH4+/SO42 - is 0.45,we suggest that ammonium and sulfate exist mainly as NH4HSO4. The concentration of NO3- shows three different patterns on the route of expedition: Japan Sea with meparison of the concentration of main water soluble ions between the First and Second Chinese National Arctic Research Expedition, the variation matches each other.

  12. Genetic Relationships of two Sonchus Species Collected from two Locations in Khartoum State Using RAPD Markers

    Directory of Open Access Journals (Sweden)

    H.H. Elkamali

    2011-03-01

    Full Text Available Random amplified polymorphic DNA markers were used to assess genetic diversity in Sonchus oleraceus and Sonchus cornatus (Asteraceae, vulnerable medicinal plants collected from two locations (Shambat and Omdurman in Khartoum state. The DNA extracted by Cetyltrimethyl ammonim bromide method (CTAB from the plant sample was amplified by successive PCR cycles. Using 15 random primers, the amplified DNA was subjected to agarose gel electrophoresis. 74 different bands were observed under UV light. A total of 51 polymorphisms (3.4 polymorphic markers per primer out of 74 (4.9 fragments per primer were obtained from the 15 primers used. Unweighted Pair Group Method with Arithmetic Averages (UPGMA clustering resulted in two major groups. According to the dendrogram, two groups were obtained based on genetic distance. The first group is indicated by A1 and A2 which were genetically similar. The second group included B1 and B2. S. oleraceus and S. cornatus from Shambat area clustered together on dendrogram and those from Omdurman area in other cluster.

  13. Multilocus sequence typing of a global collection of Pasteurella multocida isolates from cattle and other host species demonstrates niche association

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    Lainson F Alex

    2011-05-01

    Full Text Available Abstract Background Pasteurella multocida causes disease in many host species throughout the world. In bovids, it contributes to bovine respiratory disease (BRD and causes haemorrhagic septicaemia (HS. Previous studies have suggested that BRD-associated P. multocida isolates are of limited diversity. A multilocus sequence typing (MLST scheme for P. multocida was used to determine whether the low levels of diversity reported are due to the limited discriminatory power of the typing method used, restricted sample selection or true niche association. Bovine respiratory isolates of P. multocida (n = 133 from the UK, the USA and France, collected between 1984 and 2008 from both healthy and clinically affected animals, were typed using MLST. Isolates of P. multocida from cases of HS, isolates from other host species and data from the MLST database were used as comparison. Results Bovine respiratory isolates were found to be clonal (ISA 0.45 with 105/128 belonging to clonal complex 13 (CC13. HS isolates were not related to bovine respiratory isolates. Of the host species studied, the majority had their own unique sequence types (STs, with few STs being shared across host species, although there was some cross over between porcine and bovine respiratory isolates. Avian, ovine and porcine isolates showed greater levels of diversity compared to cattle respiratory isolates, despite more limited geographic origins. Conclusions The homogeneity of STs of bovine respiratory P. multocida observed, and the differences between these and P. multocida subpopulations from bovine non-respiratory isolates and non-bovine hosts may indicate niche association.

  14. Characterization and molecular cloning of a novel enzyme, inorganic polyphosphate/ATP-glucomannokinase, of Arthrobacter sp. strain KM.

    Science.gov (United States)

    Mukai, Takako; Kawai, Shigeyuki; Matsukawa, Hirokazu; Matuo, Yuhsi; Murata, Kousaku

    2003-07-01

    A bacterium exhibiting activities of several inorganic polyphosphate [poly(P)]- and ATP-dependent kinases, including glucokinase, NAD kinase, mannokinase, and fructokinase, was isolated, determined to belong to the genus Arthrobacter, and designated Arthrobacter sp. strain KM. Among the kinases, a novel enzyme responsible for the poly(P)- and ATP-dependent mannokinase activities was purified 2,200-fold to homogeneity from a cell extract of the bacterium. The purified enzyme was a monomer with a molecular mass of 30 kDa. This enzyme phosphorylated glucose and mannose with a high affinity for glucose, utilizing poly(P) as well as ATP, and was designated poly(P)/ATP-glucomannokinase. The K(m) values of the enzyme for glucose, mannose, ATP, and hexametaphosphate were determined to be 0.50, 15, 0.20, and 0.02 mM, respectively. The catalytic sites for poly(P)-dependent phosphorylation and ATP-dependent phosphorylation of the enzyme were found to be shared, and the poly(P)-utilizing mechanism of the enzyme was shown to be nonprocessive. The gene encoding the poly(P)/ATP-glucomannokinase was cloned from Arthrobacter sp. strain KM, and its nucleotide sequence was determined. This gene contained an open reading frame consisting of 804 bp coding for a putative polypeptide with a calculated molecular mass of 29,480 Da. The deduced amino acid sequence of the polypeptide exhibited homology to the amino acid sequences of the poly(P)/ATP-glucokinase of Mycobacterium tuberculosis H37Rv (level of homology, 45%), ATP-dependent glucokinases of Corynebacterium glutamicum (45%), Renibacterium salmoninarum (45%), and Bacillus subtilis (35%), and proteins of bacteria belonging to the order Actinomyces whose functions are not known. Alignment of these homologous proteins revealed seven conserved regions. The mannose and poly(P) binding sites of poly(P)/ATP-glucomannokinase are discussed. PMID:12839753

  15. Redescriptions and lectotype designations of Central American species of Phaenonotum Sharp ( Coleoptera , Hydrophilidae ) based on the type material from the David Sharp collection

    OpenAIRE

    Deler-Hernández, Albert; Fikáček, Martin

    2016-01-01

    Abstract In order to understand the identity of the Central American species of the genus Phaenonotum Sharp, 1882, the type specimens of the species described by Sharp (1882) deposited in the David Sharp collection in the Natural History Museum in London have been re-examined. The following species are redescribed: Phaenonotum apicale Sharp, 1882, Phaenonotum collare Sharp, 1882, Phaenonotum dubium Sharp, 1882 (confirmed as junior synonym of Phaenonotum exstriatum (Say, 1835)), Phaenonotum la...

  16. Characterizing the Catalytic Potential of Deinococcus, Arthrobacter and other Robust Bacteria in Contaminated Subsurface Environments of the Hanford Site

    Energy Technology Data Exchange (ETDEWEB)

    Daly, Michael J.

    2005-06-01

    Natural selection in highly radioactive waste sites may yield bacteria with favorable bioremediating characteristics. However, until recently the microbial ecology of such environments has remained unexplored because of the high costs and technical complexities associated with extracting and characterizing samples from such sites. We have examined the bacterial ecology within radioactive sediments from a high-level nuclear waste plume in the vadose zone on the DOE?s Hanford Site in south-central Washington state (Fredrickson et al, 2004). Manganese-dependent, radiation resistant bacteria have been isolated from this contaminated site including the highly Mn-dependent Deinococcus and Arthrobacter spp.

  17. Low occurrence of the new species Staphylococcus argenteus in a Staphylococcus aureus collection of human isolates from Belgium.

    Science.gov (United States)

    Argudín, M A; Dodémont, M; Vandendriessche, S; Rottiers, S; Tribes, C; Roisin, S; de Mendonça, R; Nonhoff, C; Deplano, A; Denis, O

    2016-06-01

    Staphylococcus argenteus is a novel Staphylococcus species closely related to Staphylococcus aureus that has been recently described. In this study, we investigated the proportion and the characteristics of S. argenteus recovered from humans in Belgium. S. aureus. human isolates collected in Belgium from 2006 to 2015 (n = 1,903) were retrospectively characterised via the presence of non-pigmented colonies on chocolate agar, spa typing and rpoB sequencing to determine if some of them were in fact S. argenteus. Out of 73 strains non-pigmented on chocolate plates, 3 isolates (0.16 %) showed rpoB sequences, in addition to spa and sequence types (ST2250/t5787, ST2250/t6675, ST3240/t6675), related to S. argenteus. Two of them were methicillin-resistant, harbouring a SCCmec type IV. The three S. argenteus isolates carried genes (sak, scn) of the immune evasion cluster. This first Belgian nationwide analysis showed a low occurrence of S. argenteus. Further studies should be conducted to identify the distribution range and the clinical impact of this new species. PMID:27044019

  18. Research on macrolepidoptera species (Insecta: Lepidoptera collected in Dumbrava Sibului Forest (Romania in conditions of the year 2011 and their status line in IUCN 2001 System

    Directory of Open Access Journals (Sweden)

    Cristina MOISE

    2012-05-01

    Full Text Available Macrolepidoptera fauna of Sibiu and its surroundings is studied for over 124 years by the naturalists Saxons. The collected material is preserved in the form of individual collections at the Natural History Museum in Sibiu. In addition to our material collected by us since 2001, data from these collections were a valuable documentary material for the present work. Our considerations on Macrolepidoptera flight periods are based on research conducted during the year 2011 from March to November in the protected area Dumbrava Sibiului. The natural conditions and the characteristics of the investigated area were revealed in several previous articles that could be found in the reference list. This paper lists the species collected systematically in the climatic conditions of the year 2011. Eevery species is presented besides collecting date day and month, to facilitate national and international comparisons, also the endangered degree conform established data recommended by IUCN in 2000 and 2001.

  19. Optimization of Endoglucanase Production from a Novel Bacterial Isolate, Arthrobacter sp. HPG166 and Characterization of Its Properties

    Directory of Open Access Journals (Sweden)

    Shengwei Huang

    2015-10-01

    Full Text Available ABSTRACTIn this study, a potential novel cellulolytic bacteriumArthrobacter sp. HPG166 was isolated from the hindgut of root-feeding larvaeHolotrichia parallela. Optimization of fermentation factors for endoglucanase production byArthrobacter sp. HPG166 was carried out via response surface methodology. Sodium carboxymethylcellulose 1.19% (w/v and beef extract 0.35% (w/v were the ideal combination of carbon and nitrogen sources for enzyme production; the optimum temperature and pH for cellulase production were 34°C and pH 8.0 respectively. Under the optimized fermentation conditions, the maximum endoglucanase activity of 1.411 U mL-1 was obtained. The crude endoglucanase was thermotolerant as it retained 50.31% of its activity after incubation at 70°C for an hour. Metal profile of the enzyme indicated that Mg2+ and Na+ were strong stimulators while Mn2+ and Co+ drastically inhibited its activity. Due to its particular characteristics, this enzyme could have potential for industrial applications.

  20. Studies on Bioflocculant Production by Arthrobacter sp. Raats, a Freshwater Bacteria Isolated from Tyume River, South Africa

    Directory of Open Access Journals (Sweden)

    Uchechukwu Nwodo

    2012-01-01

    Full Text Available A bioflocculant-producing bacteria was isolated from Tyume River in the Eastern Cape Province, South Africa and identified by 16S rRNA gene nucleotide sequence to have 91% similarity to Arthrobacter sp. 5J12A, and the nucleotide sequence was deposited in GenBank as Arthrobacter sp. Raats (accession number HQ875723. The bacteria produced an extracellular bioflocculant when grown aerobically in a production medium containing glucose as sole carbon source and had an initial pH of 7.0. Influences of carbon, nitrogen and metal ions sources, as well as initial pH on flocculating activity were investigated. The bacteria optimally produced the bioflocullant when lactose and urea were used as sole sources of carbon and nitrogen respectively with flocculating activities of 75.4% and 83.4% respectively. Also, the bacteria produced the bioflocculant optimally when initial pH of the medium was 7.0 (flocculating activity 84%, and when Mg2+ was used as cation (flocculating activity 77%. Composition analyses indicated the bioflocculant to be principally a glycoprotein made up of about 56% protein and 25% total carbohydrate.

  1. Optimization of four types of antimicrobial agents to increase the inhibitory ability of marine Arthrobacter oxydans KQ11 dextranase mouthwash

    Science.gov (United States)

    Ren, Wei; Wang, Shujun; Lü, Mingsheng; Wang, Xiaobei; Fang, Yaowei; Jiao, Yuliang; Hu, Jianen

    2016-03-01

    We adopted the response surface methodology using single factor and orthogonal experiments to optimize four types of antimicrobial agents that could inhibit biofilm formation by Streptococcus mutans, which is commonly found in the human oral cavity and causes tooth decay. The objective was to improve the function of marine Arthrobacter oxydans KQ11 dextranase mouthwash (designed and developed by our laboratory). The experiment was conducted in a three-level, four-variable central composite design to determine the best combination of ZnSO4, lysozyme, citric acid and chitosan. The optimized antibacterial agents were 2.16 g/L ZnSO4, 14 g/L lysozyme, 4.5 g/L citric acid and 5 g/L chitosan. The biofilm formation inhibition reached 84.49%. In addition, microscopic observation of the biofilm was performed using scanning electron microscopy and confocal laser scanning microscopy. The optimized formula was tested in marine dextranase Arthrobacter oxydans KQ11 mouthwash and enhanced the inhibition of S. mutans. This work may be promoted for the design and development of future marine dextranase oral care products.

  2. Species of the subfamily Triatominae Jeannel, 1919 (Hemiptera: Reduviidae present in the Collection of Chagas Disease Vectors (FIOCRUZ-COLVEC, State of Minas Gerais

    Directory of Open Access Journals (Sweden)

    Rita de Cássia Moreira de Souza

    2014-12-01

    Full Text Available Introduction Biological collections are depositories of information on different species and contribute to the knowledge, protection, conservation and maintenance of biodiversity. Methods A list of triatomine species currently included in the Collection of Chagas Disease Vectors (FIOCRUZ-COLVEC was prepared from the database made available by the Reference Center on Environmental Information. Results COLVEC curatorship houses 4,778 specimens of triatomines, of which 811 come from other American countries (Argentina, Bolivia, Colombia, Costa Rica, the United States of America, Guatemala, Mexico, Peru, Uruguay and Venezuela and 3,967 are autochthonous from Brazil. Altogether, 56 species of Chagas disease vectors are represented in the COLVEC: two species of the Tribe Cavernicolini Usinger, 1944; fifteen species of the tribe Rhodniini Pinto, 1926, of which 12 are of the genus Rhodnius and 3 are of the genus Psamolestes; and 39 species of the tribe Triatomini Jeannel, 1919, represented by the genus Dipetalogaster, two species of the genus Eratyrus, two of the genus Meccus, seven of the genus Panstrongylus and 27 of the genus Triatoma. Conclusions This list provides important data on the diversity of triatomines currently included in COLVEC, including the expanded area of Panstrongylus lutzi occurrence in the municipalities Pirapora and Januária, State of Minas Gerais. The maintenance and expansion of the collection ensures the preservation of biodiversity and further studies.

  3. Observation of particle-species dependence and collectivity in azimuthal correlations of pp collisions at the LHC

    CERN Document Server

    CMS Collaboration

    2016-01-01

    Measurements of two- and multi-particle angular correlations in pp collisions at $\\sqrt{s} = 5$, $7$, and $13~\\mathrm{TeV}$ are presented as a function of charged-particle multiplicity. The data, corresponding to an integrated luminosity of $1.0~\\mathrm{pb}^{-1}$ ($5~\\mathrm{TeV}$), $6.2~\\mathrm{pb}^{-1}$ ($7~\\mathrm{TeV}$), and $0.7~\\mathrm{pb}^{-1}$ ($13~\\mathrm{TeV}$), were collected using the CMS detector at the LHC. The second-order ($v_2$) and third-order ($v_3$) azimuthal anisotropy harmonics of unidentified charged particles, as well as $v_2$ of $\\text{K}_{\\text{S}}^{0}$ and $\\Lambda$/$\\overline{\\Lambda}$ particles, are extracted from long-range two-particle correlations as functions of particle multiplicity and transverse momentum, after correcting for the contribution of back-to-back jet correlations. A clear particle-species dependence of $v_2$ is observed for high-multiplicity pp events (e.g., with more than 105 charged particles produced within $|\\eta|<2.4$) at $\\sqrt{s} = 13~\\mathrm{TeV}$. Fo...

  4. Intertidal Species Inventory and Quantitative Data Collected on Oahu and Maui during 2001-2005 (NODC Accession 0002447)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Two types of data sets generated by our project: species inventories and quantitative counts of key organisms. The species inventories are a compilation of data...

  5. Intertidal species inventory and quantitative data collected on Oahu and Maui, Islands of Hawaii during 2001 - 2005 (NODC Accession 0002447)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Two types of data sets generated by our project: species inventories and quantitative counts of key organisms. The species inventories are a compilation of data...

  6. Darwin’s legacy to rove beetles (Coleoptera, Staphylinidae: A new genus and a new species, including materials collected on the Beagle’s voyage

    Directory of Open Access Journals (Sweden)

    Stylianos Chatzimanolis

    2014-02-01

    Full Text Available A species of xanthopygine rove beetles is described and figured here as Darwinilus sedarisi gen. n. and sp. n. The holotype was collected by Charles Darwin in Bahía Blanca, Argentina on the Beagle’s voyage. The contributions of Charles Darwin to rove beetle systematics are summarized briefly.

  7. Characterizing the Catalytic Potential of Deinococcus, Arthrobacter and other Robust Bacteria in Contaminated Subsurface Environments of the Hanford Site

    International Nuclear Information System (INIS)

    Ionizing Radiation (IR) Resistance in Bacteria. Until recently, there have been no clear physiologic predictors of a cell's ability to recover from ionizing radiation (IR) and other DOE-relevant oxidative stress conditions. In general, the most resistant bacteria have been Gram-positive (e.g., Deinococcus, Arthrobacter, Lactobacillus and Enterococcus spp.) and the most sensitive have been Gram-negative (e.g., Pseudomonas, Shewanella and Neisseria spp.). However, there are several reported exceptions to this paradigm, the Gram-negative cyanobacterium Chroococcidiopsis is extremely resistant to IR, whereas the Gram-positive Micrococcus luteus is sensitive. We have identified biomolecular signatures for radiation sensitivity and resistance which are independent of phylogeny, where very high and very low intracellular Mn/Fe concentration ratios correlated with very high and very low resistances, respectively; and restricting Mn(II) in the famously resistant Deinococcus radiodurans sensitized this eubacterium to IR

  8. Characterizing the Catalytic Potential of Deinococcus, Arthrobacter and other Robust Bacteria in Contaminated Subsurface Environments of the Hanford Site

    Energy Technology Data Exchange (ETDEWEB)

    Daly, Michael J.

    2006-05-01

    Ionizing Radiation (IR) Resistance in Bacteria. Until recently, there have been no clear physiologic predictors of a cell's ability to recover from ionizing radiation (IR) and other DOE-relevant oxidative stress conditions. In general, the most resistant bacteria have been Gram-positive (e.g., Deinococcus, Arthrobacter, Lactobacillus & Enterococcus spp.) and the most sensitive have been Gram-negative (e.g., Pseudomonas, Shewanella & Neisseria spp.). However, there are several reported exceptions to this paradigm, the Gram-negative cyanobacterium Chroococcidiopsis is extremely resistant to IR, whereas the Gram-positive Micrococcus luteus is sensitive. We have identified biomolecular signatures for radiation sensitivity and resistance which are independent of phylogeny, where very high and very low intracellular Mn/Fe concentration ratios correlated with very high and very low resistances, respectively; and restricting Mn(II) in the famously resistant Deinococcus radiodurans sensitized this eubacterium to IR.

  9. Characterizing the Catalytic Potential of Deinococcus, Arthrobacter and other Robust Bacteria in Contaminated Subsurface Environments of the Hanford Site

    Energy Technology Data Exchange (ETDEWEB)

    Fredrickson, Jim K.; Daly, Michael J.

    2006-06-01

    Until recently, there have been no clear physiologic predictors of a cell's ability to recover from ionizing radiation (IR), desiccation, and other DOE-relevant oxidative stress conditions. In general, the most resistant bacteria have been Gram-positive (e.g., Deinococcus, Arthrobacter, Lactobacillus & Enterococcus spp.) and the most sensitive have been Gram-negative (e.g., Pseudomonas, Shewanella & Neisseria spp.). However, there are several reported exceptions to this paradigm, the Gram-negative cyanobacterium Chroococcidiopsis is extremely resistant to IR, whereas the Gram-positive Micrococcus luteus is sensitive. We have identified biomolecular signatures for radiation sensitivity and resistance which are independent of phylogeny, where very high and very low intracellular Mn/Fe concentration ratios correlated with very high and very low resistances, respectively; and restricting Mn(II) in the famously resistant Deinococcus radiodurans sensitized this eubacterium to IR (http://cfyn.ifas.ufl.edu/radiation.pdf).

  10. Invasive fish species in the largest lakes of Scotland, Northern Ireland, Wales and England: the collective U.K. experience

    OpenAIRE

    Winfield, I.J.; Fletcher, J.M.; James, J. B.

    2011-01-01

    An invasive species is defined as an alien (or introduced or non-native) species whose establishment and spread threaten ecosystems, habitats or species with harm. Such threats to UK lake fish communities have long been appreciated and this review assembles case histories, including new data, from the largest lakes of Scotland, Northern Ireland, Wales and England to examine the hypothesis that at least some of these introductions have become invasive. Loch Lomond in Scotland has experienced s...

  11. Distinguishing Vaccinium Species by Chemical Fingerprinting Based on NMR Spectra, Validated with Spectra Collected in Different Laboratories

    OpenAIRE

    Markus, Michelle A.; Ferrier, Jonathan; Luchsinger, Sarah M.; Yuk, Jimmy; Cuerrier, Alain; Balick, Michael J.; Hicks, Joshua M.; Killday, K. Brian; Kirby, Christopher W.; Berrue, Fabrice; Kerr, Russell G.; Knagge, Kevin; GÖdecke, Tanja; Ramirez, Benjamin E.; Lankin, David C.

    2014-01-01

    A method was developed to distinguish Vaccinium species based on leaf extracts using nuclear magnetic resonance spectroscopy. Reference spectra were measured on leaf extracts from several species, including lowbush blueberry (Vaccinium angustifolium), oval leaf huckleberry (Vaccinium ovalifolium), and cranberry (Vaccinium macrocarpon). Using principal component analysis, these leaf extracts were resolved in the scores plot. Analysis of variance statistical tests demonstrated that the three gr...

  12. The suitability of the Triple trap for the collection of South African livestock-associated Culicoides species

    Directory of Open Access Journals (Sweden)

    Gert J. Venter

    2013-02-01

    Full Text Available The relatively large number of Culicoides midges (Diptera: Ceratopogonidae that can be collected with a light trap makes it the most widely used tool for this purpose. However, the majority of these traps were originally designed for collecting mosquitoes. The evaluation and improvement of traps to increase their effectiveness in collecting Culicoides midges will unavoidably form part of research on these insects. In the present study the efficiency of the Triple trap for collecting livestock-associated Culicoides midges was compared with that of the Onderstepoort 220 V, the BG-sentinel and the mini-CDC traps. A unique feature of the Triple trap is that selected surfaces are coated with TiO2 (titanium dioxide which, in the presence of ultra violet light, acts as a photo-catalyser to produce CO2, which in turn may attract blood-feeding insects. Overall, the Onderstepoort trap collected significantly higher numbers of midges than the others. Relative efficiency varied between different occasions and under some conditions, for example periods with low midge abundance during the winter, the mean numbers collected with the Triple trap did not differ significantly from those of the Onderstepoort or BG-sentinel traps. By replacing the collection chamber of the Triple trap with a sock and beaker, similar to that of the Onderstepoort trap, it can effectively be used for the collection of Culicoides midges.

  13. Harvest Records for Game Species Collected at Hillside, Mathews Brake, and Morgan Brake National Wildlife Refuges from 1998 to 2002

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — These harvest records were taken by Refuge employees at check stations between 1998 and 2002 involving archery, muzzle loading, and multiple game species

  14. Distinguishing Vaccinium species by chemical fingerprinting based on NMR spectra, validated with spectra collected in different laboratories.

    Science.gov (United States)

    Markus, Michelle A; Ferrier, Jonathan; Luchsinger, Sarah M; Yuk, Jimmy; Cuerrier, Alain; Balick, Michael J; Hicks, Joshua M; Killday, K Brian; Kirby, Christopher W; Berrue, Fabrice; Kerr, Russell G; Knagge, Kevin; Gödecke, Tanja; Ramirez, Benjamin E; Lankin, David C; Pauli, Guido F; Burton, Ian; Karakach, Tobias K; Arnason, John T; Colson, Kimberly L

    2014-06-01

    A method was developed to distinguish Vaccinium species based on leaf extracts using nuclear magnetic resonance spectroscopy. Reference spectra were measured on leaf extracts from several species, including lowbush blueberry (Vaccinium angustifolium), oval leaf huckleberry (Vaccinium ovalifolium), and cranberry (Vaccinium macrocarpon). Using principal component analysis, these leaf extracts were resolved in the scores plot. Analysis of variance statistical tests demonstrated that the three groups differ significantly on PC2, establishing that the three species can be distinguished by nuclear magnetic resonance. Soft independent modeling of class analogies models for each species also showed discrimination between species. To demonstrate the robustness of nuclear magnetic resonance spectroscopy for botanical identification, spectra of a sample of lowbush blueberry leaf extract were measured at five different sites, with different field strengths (600 versus 700 MHz), different probe types (cryogenic versus room temperature probes), different sample diameters (1.7 mm versus 5 mm), and different consoles (Avance I versus Avance III). Each laboratory independently demonstrated the linearity of their NMR measurements by acquiring a standard curve for chlorogenic acid (R(2) = 0.9782 to 0.9998). Spectra acquired on different spectrometers at different sites classifed into the expected group for the Vaccinium spp., confirming the utility of the method to distinguish Vaccinium species and demonstrating nuclear magnetic resonance fingerprinting for material validation of a natural health product. PMID:24963620

  15. Temperature, salinity, nutrient, and species identification profiles collected by bottle, CTD, and net in the Pacific Ocean from 9/10/1990 - 10/23/1990 (NODC Accession 0000090)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Temperature, species identification, and other data were collected from HOKUHO MARU using net, bottle, and CTD casts in the Pacific Ocean. Data were collected from...

  16. Species identification and other data collected from visual observation and other data from AIRCRAFT in the Puget Sound from 23 May 1978 to 31 October 1978 (NODC Accession 7900174)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Species identification and other data were collected using visual observation and other instruments from AIRCRAFT in the Puget Sound. Data were collected from 23...

  17. Alleviating salt stress in tomato seedlings using Arthrobacter and Bacillus megaterium isolated from the rhizosphere of wild plants grown on saline-alkaline lands.

    Science.gov (United States)

    Fan, Pengfei; Chen, Daitao; He, Yanan; Zhou, Qingxia; Tian, Yongqiang; Gao, Lihong

    2016-11-01

    Salt-induced soil degradation is common in farmlands and limits the growth and development of numerous crop plants in the world. In this study, we isolated salt-tolerant bacteria from the rhizosphere of Tamarix chinensis, Suaeda salsa and Zoysia sinica, which are common wild plants grown on a saline-alkaline land, to test these bacteria's efficiency in alleviating salt stress in tomato plants. We screened out seven strains (TF1-7) that are efficient in reducing salt stress in tomato seedlings. The sequence data of 16S rRNA genes showed that these strains belong to Arthrobacter and Bacillus megaterium. All strains could hydrolyze casein and solubilize phosphate, and showed at least one plant growth promotion (PGP)-related gene, indicating their potential in promoting plant growth. The Arthrobacter strains TF1 and TF7 and the Bacillus megaterium strain TF2 and TF3 could produce indole acetic acid under salt stress, further demonstrating their PGP potential. Tomato seed germination, seedling length, vigor index, and plant fresh and dry weight were enhanced by inoculation of Arthrobacter and B. megaterium strains under salt stress. Our results demonstrated that salt-tolerant bacteria isolated from the rhizosphere of wild plants grown on saline-alkaline lands could be used for alleviating salt stress in crop plants. PMID:27196364

  18. Sapphire: a better material for atomization and in situ collection of silver volatile species for atomic absorption spectrometry

    Czech Academy of Sciences Publication Activity Database

    Musil, Stanislav; Matoušek, Tomáš; Dědina, Jiří

    2015-01-01

    Roč. 108, JUN (2015), s. 61-67. ISSN 0584-8547 R&D Projects: GA ČR GA14-23532S Grant ostatní: GA AV ČR(CZ) M200311202 Institutional support: RVO:68081715 Keywords : silver * volatile species generation * sapphire tube atomizer Subject RIV: CB - Analytical Chemistry, Separation Impact factor: 3.176, year: 2014

  19. Multilocus sequence typing of a global collection of Pasteurella multocida isolates from cattle and other host species demonstrates niche association

    OpenAIRE

    Lainson F Alex; Hodgson J Christopher; Hotchkiss Emily J; Zadoks Ruth N

    2011-01-01

    Abstract Background Pasteurella multocida causes disease in many host species throughout the world. In bovids, it contributes to bovine respiratory disease (BRD) and causes haemorrhagic septicaemia (HS). Previous studies have suggested that BRD-associated P. multocida isolates are of limited diversity. A multilocus sequence typing (MLST) scheme for P. multocida was used to determine whether the low levels of diversity reported are due to the limited discriminatory power of the typing method u...

  20. Multilocus sequence typing of a global collection of Pasteurella multocida isolates from cattle and other host species demonstrates niche association

    OpenAIRE

    Hotchkiss, Emily J.; Hodgson, J. Christopher; Lainson, F. Alex; Zadoks, Ruth N.

    2011-01-01

    Background: Pasteurella multocida causes disease in many host species throughout the world. In bovids, it contributes to bovine respiratory disease (BRD) and causes haemorrhagic septicaemia (HS). Previous studies have suggested that BRD-associated P. multocida isolates are of limited diversity. A multilocus sequence typing (MLST) scheme for P. multocida was used to determine whether the low levels of diversity reported are due to the limited discriminatory power of the typing method used, res...

  1. A sapphire tube atomizer for on-line atomization and in situ collection of bismuthine and volatile species of silver

    Czech Academy of Sciences Publication Activity Database

    Musil, Stanislav; Matoušek, Tomáš; Dědina, Jiří

    Praha, 2014. s. 209-209. ISBN 978-80-905704-1-2. [European Symposium on Atomic Spectrometry ESAS 2014 & Czech-Slovak Spectroscopic Conference /15./. 16.03.2014-21.03.2014, Praha] R&D Projects: GA AV ČR(CZ) M200311202 Institutional support: RVO:68081715 Keywords : volatile species * sapphire tube atomizer * atomic absorption spectrometry Subject RIV: CB - Analytical Chemistry, Separation

  2. Production of Xylanase from Arthrobacter sp. MTCC 6915 Using Saw Dust As Substrate under Solid State Fermentation

    Directory of Open Access Journals (Sweden)

    Sevanan Murugan

    2011-01-01

    Full Text Available Saw dust was used as substrate for xylanase production from Arthrobacter sp. MTCC 6915. The study of period of incubation, temperature, pH, carbon, and nitrogen sources for xylanase production was optimized. Xylanase production was found to be optimum at an incubation period of 96 hrs (117.0 U/mL, temperature 30°C (105.0 U/mL, and pH 9.0 (102.9 U/mL. The results showed that the xylanase production was found to be higher in the presence of carboxymethylcellulose (176.4 U/mL and dextrose (126.0 U/mL. It was also observed that peptone (170.1 U/mL and beef extract (161.7 U/mL supported maximum xylanase production.The enzyme was characterized and found to be fairly active at pH 9 (764.4 U/mL and temperature 60°C (819 U/mL. Even in the present study, a major difference in the production temperature (30°C and optimal temperature (60°C of the enzyme activity was observed. However, the pH of the production media and the enzyme activity were found to be the same (pH 9.

  3. TIME DEPENDENT ACCUMULATION OF NICOTINE DERIVATIVES IN THE CULTURE MEDIUM OF ARTHROBACTER NICOTINOVORANS pAO1

    Directory of Open Access Journals (Sweden)

    Răzvan Ștefan Boiangiu

    2014-12-01

    Full Text Available Previous studies have shown that the metabolic intermediate 6-hidroxy-D-nicotine (6HNic found in the Arthrobacter nicotinovorans pAO1+ nicotine catabolic pathway has the ability to bind nicotinic acetylcholine receptors and to sustain spatial memory in rats. These properties make 6HNic a valuable compound with some potential for medical applications, thereby a suitable, simple and efficient method for producing 6-hidroxy-D-nicotine is necessary. Here, we focus on identifying the best moment for harvesting A. nicotinovorans cells in order to directly convert nicotine to 6HNic with the best yield.  The growth of  A. nicotinovorans pAO1+ was monitored and the correlation between the growth phases and nicotine metabolism was established. After about 5 hours of lag,the strain entered the log phase and was fully grown after 10 hours. The nicotine concentration began to drop dramatically as the pAO1+ culture reached saturation and was depleted in 5 hours. As the nicotine concentration dropped, 6HNic began to accumulate, reaching the maximum levels after about 11 hours of growth. Two other products could be detected by HPLC, one which was identified as the nicotine-blue (NB pigment and a second a still unknown end-product. 

  4. Evaluation of 4-bromophenol biodegradation in mixed pollutants system by Arthrobacter chlorophenolicus A6 in an upflow packed bed reactor.

    Science.gov (United States)

    Sahoo, Naresh Kumar; Pakshirajan, Kannan; Ghosh, Pranab Kumar

    2014-09-01

    Bromophenol is listed as priority pollutant by U.S. EPA, however, there is no report so far on its removal in mixed pollutants system by any biological reactor operated in continuous mode. Furthermore, bromophenol along with chlorophenol and nitrophenol are usually the major constituents of paper pulp and pesticide industrial effluent. The present study investigated simultaneous biodegradation of these three pollutants with specially emphasis on substrate competition and crossed inhibition by Arthrobacter chlorophenolicus A6 in an upflow packed bed reactor (UPBR). A 2(3) full factorial design was employed with these pollutants at two different levels by varying their influent concentration in the range of 250-450 mg l(-1). Almost complete removal of all these pollutants and 97 % effluent toxicity removal were achieved in the UPBR at a pollutant loading rate of 1707 mg l(-1) day(-1) or lesser. However, at higher loading rates, the reactor performance deteriorated due to transient accumulation of toxic intermediates. Statistical analysis of the results revealed a strong negative interaction of 4-CP on 4-NP biodegradation. On the other hand, interaction effect between 4-CP and 4-BP was found to be insignificant. Among these three pollutants 4-NP preferentially degraded, however, 4-CP exerted more inhibitory effect on 4-NP biodegradation. This study demonstrated the potential of A. chlorophenolicus A6 for biodegradation of 4-BP in mixed pollutants system by a flow through UPBR system. PMID:24934870

  5. Synergistic effect using vermiculite as media with a bacterial biofilm of Arthrobacter sp. for biodegradation of di-(2-ethylhexyl) phthalate.

    Science.gov (United States)

    Wen, Zhi-Dan; Wu, Wei-Min; Ren, Nan-Qi; Gao, Da-Wen

    2016-03-01

    Vermiculite is one of matrix material used for constructed wetland (CW) for the treatment of municipal wastewater. Arthrobacter sp. strain C21 (CGMCC No. 7671), isolated from a constructed wetland receiving municipal wastewater, forms biofilm on the surface of vermiculite. Di-(2-ethylhexyl) phthalate (DEHP), a typical phthalate pollutant in environment, can be degraded by the biofilm of strain C21 formed on vermiculite. Results of laboratory studies indicated that DEHP was removed from aqueous phase via biodegradation, adsorption by vermiculite, and adsorption by biofilm biomass. Synergistic effect of these three reactions enhanced the overall DEHP removal efficiency. During a batch incubation test with vermiculite and the cell suspension, bacterial adhesion to the media surface occurred within 5h and the phthalate esters (PEs) removal was due to both biodegradation and vermiculite adsorption. As the biofilm developed on surface of vermiculite (5-36 h), biodegradation became the predominance for PEs removal. As mature biofilm was formed (36-54 h), the adsorption of PEs by biofilm biomass became a main driving force for the removal of PEs from aqueous phase. The content of extracellular polymers (EPS) of the biofilm and DEHP removal performance showed a significant positive correlation (rp>0.86). PMID:26547620

  6. Transcriptional profiling of Gram-positive Arthrobacter in the phyllosphere: induction of pollutant degradation genes by natural plant phenolic compounds.

    Science.gov (United States)

    Scheublin, Tanja R; Deusch, Simon; Moreno-Forero, Silvia K; Müller, Jochen A; van der Meer, Jan Roelof; Leveau, Johan H J

    2014-07-01

    Arthrobacter chlorophenolicus A6 is a Gram-positive, 4-chlorophenol-degrading soil bacterium that was recently shown to be an effective colonizer of plant leaf surfaces. The genetic basis for this phyllosphere competency is unknown. In this paper, we describe the genome-wide expression profile of A.chlorophenolicus on leaves of common bean (Phaseolus vulgaris) compared with growth on agar surfaces. In phyllosphere-grown cells, we found elevated expression of several genes known to contribute to epiphytic fitness, for example those involved in nutrient acquisition, attachment, stress response and horizontal gene transfer. A surprising result was the leaf-induced expression of a subset of the so-called cph genes for the degradation of 4-chlorophenol. This subset encodes the conversion of the phenolic compound hydroquinone to 3-oxoadipate, and was shown to be induced not only by 4-chlorophenol but also hydroquinone, its glycosylated derivative arbutin, and phenol. Small amounts of hydroquinone, but not arbutin or phenol, were detected in leaf surface washes of P.vulgaris by gas chromatography-mass spectrometry. Our findings illustrate the utility of genomics approaches for exploration and improved understanding of a microbial habitat. Also, they highlight the potential for phyllosphere-based priming of bacteria to stimulate pollutant degradation, which holds promise for the application of phylloremediation. PMID:24373130

  7. MOLECULAR IDENTIFICATION AND BARCODING OF TWO SHRIMP SPECIES (PARAPENAEOPSIS SCULPTILLIS AND PARAPENAEOPSIS HARDWIKII COLLECTED FROM GORAI CREEK OF MUMBAI, WEST COAST OF INDIA

    Directory of Open Access Journals (Sweden)

    G. Zodape

    2016-03-01

    Full Text Available Purpose. Molecular identification of two shrimp species (Parapenaeopsis sculptillis and Parapenaeopsis hardwikii from Gorai creek, Mumbai, west coast of India. Methodology. The specimens of Shrimps Parapenaeopsis sculptillis and Parapenaeopsis hardwikii were collected from Gorai creek. The samples were morphologically identified as per the FAO guidelines manual and by using taxonomic keys. Genomic DNA was extracted from muscle tissue using DNA isolation kit (Hi Media, India. Molecular identification was carried out by using cytochrome oxidase subunit I (COI, gene sequencing by using specific primers LCO1490 and HCO2198. Phylogenetic tree was constructed by neighbour-joining method using mega 6 software to determine the relationship of the samples with known sequences in database. Findings. The P. sculptillis and P. hardwikii showed closest sequence similarities with P. cornuta (84% and Thysanopoda obtusifrons (83%. A phylogenetic tree was constructed based on COI gene, which separates the populations into thirteen stable clades. The results on DNA barcoding and current distribution of P. culptillis and P. hardwikii and their haplotype P. cornuta and Thysanopoda obtusifrons showed phylogenetic relationship among them, providing insights into the adaptive evolution of DNA sequences. The phylogenetic divergence analyses of the selected specie showed worldwide distribution because the above said species and their haplotype species showed complex sequence diversities that are having functional relevance with energy metabolism and environmental adaptation. Originality. First attempt to use molecular genetic techniques for the identification of Parapenaeopsis sculptillis and Parapenaeopsis hardwikii and to compare their DNA sequences with other haplotype species such as P. cornuta and Thysanopoda obtusifrons. Practical value. The obtained data can be used for shrimp species identification and studies of their phylogenetics and population genetics.

  8. Cockroach-allergen study: allergen patterns of three common cockroach species probed by allergic sera collected in two cities.

    Science.gov (United States)

    Kang, B C; Wilson, M; Price, K H; Kambara, T

    1991-06-01

    Antigens/allergens of three common cockroach extracts, crude whole body extract of the American cockroach (CRa-A), crude whole body extract of the German cockroach (CRa-G), and crude whole body extract of the Oriental cockroach (CRa-O), were studied with crossed immunoelectrophoresis, crossed radioimmunoelectrophoresis, and Western blot analysis. Sera of cockroach-allergic patients with asthma, 10 from Chicago, Ill. (C group) and six patients from Lexington, Ky. (L group), were used; results were then compared with sera of control subjects with asthma. Qualitative differences in protein bands were noted among CRa-A, CRa-G, and CRa-O by crossed immunoelectrophoresis and sodium dodecyl sulfate-polyacrylamide gel electrophoresis. Allergen bands on Western blot were analyzed for distribution by molecular weight (MW) with relative intensity scores. Results were compared by species and by geography. Two to 12 allergenic bands of variable MW (14 kd to greater than 116 kd) were identified by 13 of 16 individual sera from cockroach-allergic patients from all three extracts. CRa-A demonstrated 55 bands with an intensity score of 125; CRa-G, 58 bands with an intensity score of 100; and CRa-O, 51 bands with an intensity score of 108. Allergenic bands of CRa-A were identified by six sera of the C group and one sera of the L group, whereas bands of both CRa-G and CRa-O were noted by nine sera of the C group and four sera of the L group. All three species had an allergen band in MW range of 40 to 45 kd that reacted to most sera from cockroach-allergic patients with asthma. PMID:2045612

  9. Isolation and characterization of atrazine-degrading Arthrobacter sp. AD26 and use of this strain in bioremediation of contaminated soil

    Institute of Scientific and Technical Information of China (English)

    LI Qingyan; LI Ying; ZHU Xikun; CAI Baoli

    2008-01-01

    A bacterial strain (AD26) capable of utilizing atrazine as a sole nitrogen source for growth was isolated from an industrial wastewatersample by enrichment culture. The 16S rRNA gene sequencing identified AD26 as anArthrobacter sp. PCR assays indicated that AD26contained atrazine-degrading genes trzN and atzBC. The trzN gene of AD26 only differs from the trzN ofArthrobacter aurescens TC1by one base (A→T at 907) and one amino acid (Met→Leu at 303). The specific activity of trzN of AD26 in crude cell extract was0.28 U/mg, which was 1.2 times that of TC 1. This strain has shown faster growth and atrazine-degradation rates in atrazine-containingminimal media than two well characterized atrazine-degrading bacteria, Pseudomonas sp. ADP and Arthrobacter aurescens TC 1. Afterincubating for 48 h at 30℃, the OD600 of AD26 reached 2.6 compared with 1.33 of ADP. AD26 was capable of degrading 500 mg/Lof atrazine in minimal medium at 95% in 72 h, while the degradative rates by TC1 and ADP were only 90% and 86%, respectively. Abioremediation trial of contaminated soil has indicated that AD26 can degrade as high as 98% of atrazine contained in soil (300 mg/kg)after incubating for 20 d at 26℃, nominating this strain as a good candidate for use in bioremediation programs.

  10. capA, a cspA-like gene that encodes a cold acclimation protein in the psychrotrophic bacterium Arthrobacter globiformis SI55.

    OpenAIRE

    Berger, F.; Normand, P.; Potier, P

    1997-01-01

    By use of Arthrobacter globiformis SI55, a psychrotrophic bacterium capable of growth between -5 and +32 degrees C, we cloned and sequenced capA, a gene homologous to cspA encoding the major cold shock protein in Escherichia coli. The deduced protein sequence has a high level of identity with the sequences of other CspA-related proteins from various sources, and no particular residue or domain that could be specific to cold-adapted microorganisms emerged. We show that CapA was produced very r...

  11. Proizvodnja β-fruktofuranozidaze s pomoću bakterije Arthrobacter sp. i primjena tog enzima u pretvorbi steviozida i rebaudiozida A

    OpenAIRE

    Xu, Zhong-Wei; Li, Yu-Qiang; Wang, Yong-Hua; Yang, Bo; Ning, Zheng-Xiang

    2009-01-01

    U proizvodnji enzima β-fruktofuranozidaze upotrijebljen je soj bakterije Arthrobacter sp. 10137. Kao najbolji izvori ugljika i dušika za proizvodnju enzima u pokusu na tresilici upotrijebljeni su saharoza i kukuruzni ekstrakt u omjeru 10:1. Maksimalna aktivnost β-fruktofuranozidaze od 26,69 U/mL postignuta je šaržnim uzgojem nakon 22,5 h. Sirovi enzim β-fruktofuranozidaza, dobiven ultrafiltracijom i frakcioniranjem s (NH4)2SO4, pročišćen je 7 puta, što je potvrđeno usporedbom specifične aktiv...

  12. Isolation and Characterization of IS1409, an Insertion Element of 4-Chlorobenzoate-Degrading Arthrobacter sp. Strain TM1, and Development of a System for Transposon Mutagenesis

    OpenAIRE

    Gartemann, Karl-Heinz; Eichenlaub, Rudolf

    2001-01-01

    A new insertion element of 1,449 bp with 25-bp perfect terminal repeats, designated IS1409, was identified in the chromosome of 4-chlorobenzoate-degrading Arthrobacter sp. strain TM1 NCIB12013. Upon insertion, IS1409 causes a target duplication of 8 bp. IS1409 carries only a single open reading frame of 435 codons encoding the transposase TnpA. Both TnpA and the overall organization of IS1409 are highly similar to those of some related insertion elements of the ISL3 group (J. Mahillon and M. ...

  13. Enhanced U(VI) release from autunite mineral by aerobic Arthrobacter sp. in the presence of aqueous bicarbonate

    Energy Technology Data Exchange (ETDEWEB)

    Katsenovich, Yelena; Carvajal, Denny A.; Wellman, Dawn M.; Lagos, Leonel

    2012-04-20

    The bacterial effect on U(VI) leaching from the autunite mineral (Ca[(UO{sub 2})(PO{sub 4})]{sub 2} {center_dot} 3H{sub 2}O) was investigated to provide a more comprehensive understanding into important microbiological processes affecting autunite stability within subsurface bicarbonate-bearing environments. Experiments were performed in a culture of G975 Arthrobacter oxydans strain, herein referred to as G975, a soil bacterium previously isolated from Hanford Site soil. 91 mg of autunite powder and 50 mL of phosphorus-limiting sterile media were amended with bicarbonate ranging between 1-10 mM in glass reactor bottles and inoculated with G975 strain after the dissolution of autunite was at steady state. SEM observations indicated G975 formed a biofilm on the autunite surface and penetrated the mineral cleavages. The mineral surface colonization by bacteria tended to increase concomitantly with bicarbonate concentrations. Additionally, a sterile cultureware with inserts was used in non-contact bioleaching experiments where autunite and bacteria cells were kept separately. The data suggest the G975 bacteria is able to enhance U(VI) leaching from autunite without the direct contact with the mineral. In the presence of bicarbonate, the damage to bacterial cells caused by U(VI) toxicity was reduced, yielding similar values for total organic carbon (TOC) degradation and cell density compared to U(VI)-free controls. The presence of active bacterial cells greatly enhanced the U(VI) bioleaching from autunite in bicarbonate-amended media.

  14. Detection of a Hepatozoon and spotted fever group Rickettsia species in the common marsupial tick (Ixodes tasmani) collected from wild Tasmanian devils (Sarcophilus harrisii), Tasmania.

    Science.gov (United States)

    Vilcins, Inger-Marie E; Old, Julie M; Deane, Elizabeth

    2009-05-26

    Tasmanian devils are the largest extant marsupial carnivores, confined to the Australian island state of Tasmania. The iconic marsupial has dramatically declined in number since the discovery of devil facial tumor disease in 1996 and efforts are being made to uncover vital information to assist in the long-term survival of the species. Ticks are the main vectors of arthropod-borne disease in animals, raising the question of whether Tasmanian devils may be host to arthropods capable of harboring infectious agents. Partially engorged ticks were collected from 35 wild Tasmanian devils and tested for the presence of a range of tick-borne genera. A spotted fever group Rickettsia was detected in 45.5% of samples of the tick Ixodes tasmani (n=44), from all trapping locations, sharing close sequence identity to members of the Rickettsia massiliae group. A Hepatozoon species was also identified in 34.1% of the same sample set, sharing sequence similarities to Hepatozoon felis, a known pathogen of felids. Dual detection was identified in 13.6% of tick samples, where prevalence of the two genera overlapped. The existence of two previously undetected species of genera known for containing pathogens identifies additional potential risks to the health of the devil population. PMID:19303711

  15. Assess the prevalence rate of Campylobacter genus and Campylobacter jejuni species in raw milk collected from the Amol City by Multiplex- Polymerase Chain Reaction

    Directory of Open Access Journals (Sweden)

    Ali Dabiri

    2016-03-01

    Full Text Available Background & Objective: Campylobacter can be transmitted through the raw milk. The purpose of this study was to determine the prevalence of Campylobacter genus and Campylobacter jejuni (C. jejuni species in raw milk samples. Materials & Methods: In this study, 72 samples of raw milk were collected of the platforms milk in the Amol city in summer. Phenotypic identification of Campylobacter genus and C. jejuni species using microbiology laboratory methods and molecular identification of this bacterium using Multiplex- Polymerase Chain Reaction (M-PCR were performed. The data was calculated using the SPSS 16.0 software and the Fisher's exact test (p < 0.05. Results: Among the 72 samples, 13.88% of samples were contaminated with C. jejuni and 2.77% were contaminated with Campylobacter genus. The highest prevalence rate for this bacterium was in July (20.83% and the lowest prevalence rate was in September (12.5%. The significant difference between the prevalence of the Campylobacter genus and C. jejuni species in raw milk samples in various months of summer was not observed (p = 0.07. Conclusion: This study showed the raw milk contamination with Campylobacter, and thereby the sanitation in the dairy food production places and the use of fast and accurate method to identify this bacterium is important.

  16. Life history correlates of fecal bacterial species richness in a wild population of the blue tit Cyanistes caeruleus.

    Science.gov (United States)

    Benskin, Clare McW H; Rhodes, Glenn; Pickup, Roger W; Mainwaring, Mark C; Wilson, Kenneth; Hartley, Ian R

    2015-02-01

    Very little is known about the normal gastrointestinal flora of wild birds, or how it might affect or reflect the host's life-history traits. The aim of this study was to survey the species richness of bacteria in the feces of a wild population of blue tits Cyanistes caeruleus and to explore the relationships between bacterial species richness and various life-history traits, such as age, sex, and reproductive success. Using PCR-TGGE, 55 operational taxonomic units (OTUs) were identified in blue tit feces. DNA sequencing revealed that the 16S rRNA gene was amplified from a diverse range of bacteria, including those that shared closest homology with Bacillus licheniformis, Campylobacter lari, Pseudomonas spp., and Salmonella spp. For adults, there was a significant negative relationship between bacterial species richness and the likelihood of being detected alive the following breeding season; bacterial richness was consistent across years but declined through the breeding season; and breeding pairs had significantly more similar bacterial richness than expected by chance alone. Reduced adult survival was correlated with the presence of an OTU most closely resembling C. lari; enhanced adult survival was associated with an OTU most similar to Arthrobacter spp. For nestlings, there was no significant change in bacterial species richness between the first and second week after hatching, and nestlings sharing the same nest had significantly more similar bacterial richness. Collectively, these results provide compelling evidence that bacterial species richness was associated with several aspects of the life history of their hosts. PMID:25750710

  17. Entomological and ecological aspects of six sylvatic species of triatomines (Hemiptera, Reduviidae from the collection of the National Biodiversity Institute of Costa Rica, Central America

    Directory of Open Access Journals (Sweden)

    Rodrigo Zeledón

    2001-08-01

    Full Text Available A total of 797 specimens of wild adult triatomines, belonging to six species from the entomological collections of the Costa Rican National Biodiversity Institute, was studied from the standpoint of their relative abundance, as reflected by light traps, distribution in the country, seasonal variations and climatic and altitudinal preferences. Triatoma dimidiata was the most abundant species (32.9% of the total specimens, with a very extensive distribution in different ecological zones, being more common between 100 to 400 m above sea level mainly at the end of the dry season. T. dispar was the third in frequency (21.5%, with narrower distribution, more abundant between 600 to 800 m and scarce during the dry season. Panstrongylus geniculatus and P. rufotuberculatus, second and fourth in frequency (22.1% and 15.1%, respectively, were widely distributed on both the Pacific and Caribbean basins, the former being more common between 80 to 270 m all year round and the latter below 800 m mainly during the first semester. Eratyrus cuspidatus which represented only 4.9% of the insects, was also present on both basins mainly below 200 m with a tendency to be scarce during certain months of the year, and was found in all types of ecological zones. Finally, Rhodnius pallescens, the least abundant species (3.6% was restricted to very humid areas below 20 m, on the north side and Caribbean basin. With the exception of R. pallescens, males were more commonly found than females. Some epidemiological implications related to the six species are discussed.

  18. Species identification and other data collected from visual observation and other data from AIRCRAFT in the North Pacific Ocean and Puget Sound from 30 November 1977 to 04 October 1978 (NODC Accession 7800394)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Species identification and other data were collected using visual observation and other instruments from AIRCRAFT in the Puget Sound and North Pacific Ocean. Data...

  19. Temperature, salinity, biology (species, and subspecies) profiles collected by bottle and water pump in the Southern oceans, the Southwest Pacific, and the Indian Ocean from 1/4/1984 - 2/16/1984 (NODC Accession 0000118)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Temperature profile and species data were collected using bottle, water pump, and XBT casts in the Southern Oceans, Indian Ocean, and Pacific Ocean. Data were...

  20. Temperature, salinity, species identification, nutrient profiles and meteorological data collected by bottle, CTD, and plankton net on multiple cruises in the Pacific Ocean and South China Sea from 10/15/1970 - 02/13/1987 (NODC Accession 0000088)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Temperature, species identification, and other data were collected from XIANG YANG HONG 14 and other platforms using net, bottle, and CTD casts in the Pacific Ocean...

  1. Temperature, salinity, species identification, nutrient profiles and meteorological data collected by bottle and net in the Northwest Pacific Ocean from 6/10/1975 - 8/5/1975 (NODC Accession 0000194)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Temperature profile, nutrients, species identification, and other data were collected using net and bottle casts from the RYOFU MARU in the Northwest Pacific Ocean....

  2. Characterization of an exo-inulinase from Arthrobacter: a novel NaCl-tolerant exo-inulinase with high molecular mass.

    Science.gov (United States)

    Shen, Jidong; Zhang, Rui; Li, Junjun; Tang, Xianghua; Li, Ruixian; Wang, Min; Huang, Zunxi; Zhou, Junpei

    2015-01-01

    A glycoside hydrolase family 32 exo-inulinase gene was cloned from Arthrobacter sp. HJ7 isolated from saline soil located in Heijing town. The gene encodes an 892-residue polypeptide with a calculated mass of 95.1 kDa and a high total frequency of amino acid residues G, A, and V (30.0%). Escherichia coli BL21 (DE3) cells were used as hosts to express the exo-inulinase gene. The recombinant exo-inulinase (rInuAHJ7) showed an apparently maximal activity at pH 5.0-5.5 and 40-45°C. The addition of 1.0 and 10.0 mM Zn(2+) and Pb(2+) had little or no effect on the enzyme activity. rInuAHJ7 exhibited good salt tolerance, retaining more than 98% inulinase activity at a concentration of 3.0%-20.0% (w/v) NaCl. Fructose was the main product of inulin, levan, and Jerusalem artichoke tubers hydrolyzed by the enzyme. The present study is the first to report the identification and characterization of an Arthrobacter sp exo-inulinase showing a high molecular mass of 95.1 kDa and NaCl tolerance. These results suggest that the exo-inulinase might be an alternative material for potential applications in processing seafood and other foods with high saline contents, such as marine algae, pickles, and sauces. PMID:25695343

  3. Evaluation of chromate reductase activity in the cell-free culture filtrate of Arthrobacter sp. SUK 1201 isolated from chromite mine overburden.

    Science.gov (United States)

    Dey, Satarupa; Paul, A K

    2016-08-01

    Arthrobacter sp. SUK 1201, a chromate resistant and reducing bacterium isolated from chromite mine overburden of Sukinda valley, Odisha, India has been evaluated for its hexavalent chromium [Cr(VI)] reduction potential using cell-free culture filtrate as extracellular chromate reductase enzyme. Production of the enzyme was enhanced in presence of Cr(VI) and its reducing efficiency was increased with increasing concentration of Cr(VI). The Michaelis-Menten constant (Km) and the maximum specific velocity (Vmax) of the extracellular Cr(VI) reductase were calculated to be 54.03 μM Cr(VI) and 5.803 U mg(-1) of protein respectively showing high affinity towards Cr(VI). The reducing activity of the enzyme was maximum at pH 6.5-7.5 and at a temperature of 35 °C and was dependent on NADH. The enzyme was tolerant to different metals such as Mn(II), Mg(II) and Fe(III) and was able to reduce Cr(VI) present in chromite mine seepage. These findings suggest that the extracellular chromate reductase of Arthrobacter sp. SUK 1201 has a great promise for use in Cr(VI) detoxification under different environmental conditions, particularly in the mining waste water treatment systems. PMID:27176938

  4. Purification and characterization of a novel marine Arthrobacter oxydans KQ11 dextranase.

    Science.gov (United States)

    Wang, Delong; Lu, Mingsheng; Wang, Shujun; Jiao, Yuliang; Li, Weijuan; Zhu, Qiang; Liu, Zhaopu

    2014-06-15

    Dextranases can hydrolyze dextran deposits and have been used in the sugar industry. Microbial strains which produce dextranases for industrial use are chiefly molds, which present safety issues, and dextranase production from them is impractically long. Thus, marine bacteria to produce dextranases may overcome these problems. Crude dextranase was purified by a combination of ammonium sulfate fractionation and ion-exchange chromatography, and then the enzyme was characterized. The enzyme was 66.2 kDa with an optimal temperature of 50°C and a pH of 7. The enzyme had greater than 60% activity at 60°C for 1h. Moreover, 10mM Co(2+) enhanced dextranase activity (196%), whereas Ni(2+) and Fe(3+) negatively affected activity. 0.02% xylitol and 1% alcohol enhanced activity (132.25% and 110.37%, respectively) whereas 0.05% SDS inhibited activity (14.07%). The thickness of S. mutans and mixed-species oral biofilm decreased from 54,340 nm to 36,670 nm and from 64,260 nm to 43,320 nm, respectively. PMID:24721052

  5. Radioactive Cs accumulations in wildlife (some species of birds and mammals). Collected from eastern part of Nihonmatsu City, Fukushima Prefecture, Japan

    International Nuclear Information System (INIS)

    Radioactive Cs (134Cs and 137Cs) concentrations were measured in various organs and tissues of wild animals (Four species of mammals and 3 species of birds) collected from eastern part of Nihonmatsu City in Fukushima Prefecture, during 2011 to 2013. Muscular concentrations of radioactive Cs were higher than the other organs and tissues such as liver and kidney. However, the tissues which has important role such as brain and reproductive gland showed comparative concentrations of radioactive Cs. Decreasing trends of radioactive Cs in body of wildlife were observed from in April of 2011 to end of 2013. In the other hand, species inhabiting in forest tended to keep relatively high levels of radioactive Cs. Concentrations of radioactive Cs in great cover of birds were higher than those in other parts of feather such as breast feathers. Clearly high concentrations were observed in vane of feather when comparing with those of shaft. These findings suggest that feather samples of birds are effective parts as indicator of exterior pollution of their habitat and also suggest that air pollution of radioactive Cs still continued during on 2012 and 2013. Relative higher concentrations of radioactive Cs were detected in the body of piglets than those of mother of Japanese wild boar and comparative concentrations were observed in the egg albumen and yolk of spot-billed duck. These were suggested that radioactive Cs can transfer to fetus and eggs from mother's body and pollution may continue through generations. Therefore, the continual monitoring using wildlife is require strongly for evaluation of ecological risks and human health. (author)

  6. PLASMID-ENCODED PHTHALATE CATABOLIC PATHWAY IN ARTHROBACTER KEYSERI 12B: BIOTRANSFORMATIONS OF 2-SUBSTITUTED BENZOATES AND THEIR USE IN CLONING AND CHARACTERIZATION OF PHTHALATE CATABOLISM GENES AND GENE PRODUCTS

    Science.gov (United States)

    Several 2-substituted benzoates (including 2-trifluoromethyl-, 2-chloro-, 2-bromo-, 2-iodo-, 2-nitro-, 2-methoxy-, and 2-acetyl-benzoates) were converted by phthalate-grown Arthrobacter keyseri 12B to the corresponding 2-substituted 3,4-dihydroxybenzoates (protocatechuates)...

  7. Study of the inorganic constituents in different species of Casearia medicinal plant collected in distinct regions of the Atlantic Forest, SP State, Brazil

    International Nuclear Information System (INIS)

    The use of medicinal plants in the treatment of diseases has increased significantly in the last years, as has research concerning chemical characterization of these plants. In this study, inorganic constituents were determined in leaves and in extracts from three medicinal plant species of the Casearia genus (C. sylvestris, C. decandra and C. obliqua) collected in distinct regions of the Atlantic Forest, SP. The elemental compositions of the soils in which these plants were grown were also determined. Traditionally, these plants are used due to their antiinflammatory, antiacid, antiseptic and cicatrizing properties. The antiulcer and the antitumor activities of the Casearia genus and its capacity to neutralize snake and bee venoms, have also been scientifically confirmed. The analytical methodology used was neutron activation analysis. Long and short irradiation periods of the samples and the standards were carried out at IPEN's IEA-R1 nuclear research reactor. In the leaf K was found at the percentage levels, Ca, Cl, Mg and Na at mg g-1 levels and the elements Br, Fe, Mn, Rb and Zn at the μg g-1 levels. As, Co, Cr, Cs, La, Sb, Sc and Se at the ng g-1 levels. Results obtained in the extracts indicated that the same elements present in the leaves are also found in their extracts. The comparison between the inorganic composition of Casearia sylvestris leaves collected from three different regions of the Atlantic Forest showed that the elemental concentrations in the plants leaves varied depending on the place where they were grown. Different Casearia species cultivated in a same region presented similar elemental compositions. Based on these findings it can be concluded that the studies about the pharmacological effect of Casearia genus plants grown in different types of soil are of great importance. The quality of the obtained results was assured by the analyses of the certified reference materials NIST 1573a Tomato Leaves, NIST 1515 Apple Leaves, INCT-TL-1 Tea

  8. Non-phytoseiid Mesostigmata within citrus orchards in Florida: species distribution, relative and seasonal abundance within trees, associated vines and ground cover plants and additional collection records of mites in citrus orchards.

    Science.gov (United States)

    Childers, Carl C; Ueckermann, Eduard A

    2015-03-01

    Seven citrus orchards on reduced- to no-pesticide spray programs in central and south central Florida were sampled for non-phytoseiid mesostigmatid mites. Inner and outer canopy leaves, fruits, twigs and trunk scrapings were sampled monthly between August 1994 and January 1996. Open flowers were sampled in March from five of the sites. A total of 431 samples from one or more of 82 vine or ground cover plants were sampled monthly in five of the seven orchards. Two of the seven orchards (Mixon I and II) were on full herbicide programs and vines and ground cover plants were absent. A total of 2,655 mites (26 species) within the families: Ascidae, Blattisociidae, Laelapidae, Macrochelidae, Melicharidae, Pachylaelapidae and Parasitidae were identified. A total of 685 mites in the genus Asca (nine species: family Ascidae) were collected from within tree samples, 79 from vine or ground cover plants. Six species of Blattisociidae were collected: Aceodromus convolvuli, Blattisocius dentriticus, B. keegani, Cheiroseius sp. near jamaicensis, Lasioseius athiashenriotae and L. dentatus. A total of 485 Blattisociidae were collected from within tree samples compared with 167 from vine or ground cover plants. Low numbers of Laelapidae and Macrochelidae were collected from within tree samples. One Zygoseius furciger (Pachylaelapidae) was collected from Eleusine indica. Four species of Melicharidae were identified from 34 mites collected from within tree samples and 1,190 from vine or ground cover plants: Proctolaelaps lobatus was the most abundant species with 1,177 specimens collected from seven ground cover plants. One Phorytocarpais fimetorum (Parasitidae) was collected from inner leaves and four from twigs. Species of Ascidae, Blattisociidae, Melicharidae, Laelapidae and Pachylaelapidae were collected from 31 of the 82 vine or ground cover plants sampled, representing only a small fraction of the total number of Phytoseiidae collected from the same plants. Including the

  9. Collecting biodiversity

    OpenAIRE

    Haripersaud, P.P.

    2009-01-01

    Collecting biodiversity There are major concerns about the use of primary species occurrence data that are rapidly becoming available on the internet for ecological studies. To this end, this research assessed the extent of biases associated with a herbarium dataset based is based on specimens collected in Guyana, Suriname and French Guiana. After getting an understanding of the biases, the database was used to: (a) develop a model to simulate relative abundance distributions in the herbarium...

  10. Cytogenetic study of two species of the family Pimelodidae (Siluriformes collected in lago Guaíba, Rio Grande do Sul, Brazil

    Directory of Open Access Journals (Sweden)

    Fernando Rodrigo Treco

    2008-03-01

    Full Text Available A cytogenetic study was conducted on specimens of Parapimelodus nigribarbis and Pimelodus maculatus collected in the lago Guaíba drainage, Porto Alegre, Rio Grande do Sul, Brazil. The two species had a diploid number of 56 chromosomes, with P. nigribarbis showing a karyotype of 20m + 20sm + 4st + 12a with FN of 100, and P. maculatus showing a karyotype of 24m + 20sm + 6st + 6a with FN of 106. NORs were demonstrated in both species in only one pair of subtelocentric chromosomes, in the terminal region of the long arm, which was coincident with C- banding and CMA3 staining, while DAPI staining was negative in these regions. Parapimelodus nigribarbis had a greater number of heterochromatic bands than did P. maculatus, which were distributed mainly in the terminal regions, where the latter species showed an interstitial band on the short arm of the first metacentric pair. C-banding plus CMA3 demonstrated heterochromatin that was associated with GC-rich NORs in both P. nigribarbis and P. maculatus, although other fluorescent regions were also observed in the former species. With C-banding plus DAPI, various chromosomal regions were stained in the two species, along with interstitial staining in P. maculatus, indicating that heterochromatin contained a greater quantity of AT-rich regions.Exemplares de Parapimelodus nigribarbis e Pimelodus maculatus coletados na bacia do rio Guaíba, Porto Alegre, Rio Grande do Sul, foram analisados citogeneticamente. As duas espécies apresentaram um número diplóide de 56 cromossomos, com P. nigribarbis mostrando um cariótipo de 20m + 20sm + 4st + 12a, NF igual a 100; e P. maculatus com 24m + 20sm + 6st + 6a e NF igual 106. As NORs foram evidenciadas em apenas um par de cromossomos subtelocêntricos, na região terminal do braço longo, nas duas espécies estudadas, sendo coincidentes com a banda C e CMA3; o DAPI nestas regiões se mostrou negativo. Parapimelodus nigribarbis apresentou um maior número de bandas

  11. Production of β -cyclodextrin from pH and thermo stable Cyclodextrin Glycosyl Transferase, obtained from Arthrobacter mysorens and its evaluation as a drug carrier for Irbesartan.

    Science.gov (United States)

    Rajesh, Y; Narayanan, K; Reddy, M Sreenivasa; Bhaskar, Vijaya K; Shenoy, G Gautham; Subrahmanyam, V M; Rao, J Venkata

    2015-01-01

    Cyclodextrins (CDs) are carrier molecules produced by cyclization of α-1,4-glucans by Cyclodextrin Glycosyl Transferase (CGTase). These torus shaped molecules have hydrophobic cavity and hydrophilic shell making them useful in pharmaceutical, food, textile, pesticide and cosmetic industries. In this study, culture conditions for the production of CGTase by organism belonging to Arthrobacter genus obtained from a paddy field soil were optimized by single parameter mode. Soluble starch, yeast extract and magnesium sulphate played an important role in CGTase production. Percentage increase in CGTase yield under optimized conditions was 396.77%. The enzyme precipitated by 60% ammonium sulphate was purified using DEAE-sepharose. The molecular weight of the purified protein as determined by SDS-PAGE was 75 kDa. Purified CGTase was thermostable and stable over a wide pH range. Dissolution studies on β -cyclodextrin-Irbesartan complex revealed that β -CDs formed were useful in preparing immediate release oral dosage forms. PMID:25901452

  12. Monitoring Arthrobacter protophormiae RKJ100 in a 'tag and chase' method during p-nitrophenol bio-remediation in soil microcosms.

    Science.gov (United States)

    Pandey, Gunjan; Pandey, Janmejay; Jain, Rakesh K

    2006-05-01

    Monitoring of micro-organisms released deliberately into the environment is essential to assess their movement during the bio-remediation process. During the last few years, DNA-based genetic methods have emerged as the preferred method for such monitoring; however, their use is restricted in cases where organisms used for bio-remediation are not well characterized or where the public domain databases do not provide sufficient information regarding their sequence. For monitoring of such micro-organisms, alternate approaches have to be undertaken. In this study, we have specifically monitored a p-nitrophenol (PNP)-degrading organism, Arthrobacter protophormiae RKJ100, using molecular methods during PNP degradation in soil microcosm. Cells were tagged with a transposon-based foreign DNA sequence prior to their introduction into PNP-contaminated microcosms. Later, this artificially introduced DNA sequence was PCR-amplified to distinguish the bio-augmented organism from the indigenous microflora during PNP bio-remediation. PMID:16205921

  13. A new cold-adapted β-D-galactosidase from the Antarctic Arthrobacter sp. 32c – gene cloning, overexpression, purification and properties

    Directory of Open Access Journals (Sweden)

    Kur Józef

    2009-07-01

    Full Text Available Abstract Background The development of a new cold-active β-D-galactosidases and microorganisms that efficiently ferment lactose is of high biotechnological interest, particularly for lactose removal in milk and dairy products at low temperatures and for cheese whey bioremediation processes with simultaneous bio-ethanol production. Results In this article, we present a new β-D-galactosidase as a candidate to be applied in the above mentioned biotechnological processes. The gene encoding this β-D-galactosidase has been isolated from the genomic DNA library of Antarctic bacterium Arthrobacter sp. 32c, sequenced, cloned, expressed in Escherichia coli and Pichia pastoris, purified and characterized. 27 mg of β-D-galactosidase was purified from 1 L of culture with the use of an intracellular E. coli expression system. The protein was also produced extracellularly by P. pastoris in high amounts giving approximately 137 mg and 97 mg of purified enzyme from 1 L of P. pastoris culture for the AOX1 and a constitutive system, respectively. The enzyme was purified to electrophoretic homogeneity by using either one step- or a fast two step- procedure including protein precipitation and affinity chromatography. The enzyme was found to be active as a homotrimeric protein consisting of 695 amino acid residues in each monomer. Although, the maximum activity of the enzyme was determined at pH 6.5 and 50°C, 60% of the maximum activity of the enzyme was determined at 25°C and 15% of the maximum activity was detected at 0°C. Conclusion The properties of Arthrobacter sp. 32cβ-D-galactosidase suggest that this enzyme could be useful for low-cost, industrial conversion of lactose into galactose and glucose in milk products and could be an interesting alternative for the production of ethanol from lactose-based feedstock.

  14. Biogeochemical plant–soil interaction: Variable element composition in leaves of four plant species collected along a south–north transect at the southern tip of Norway

    International Nuclear Information System (INIS)

    Leaves from four different plant species (birch, willow, juniper, and heather) together with samples of the soil O and C horizons were collected at 44–46 sites along a south-to-north transect extending inland for 200 km from the southern tip of Norway. The transect covers one of the steepest vegetation gradients on Earth, crossing six vegetation zones. Juniper and heather are evergreen, and preferably exclude potentially toxic elements to avoid their accumulation in assimilating tissues, birch and willow shed their leaves in autumn together with the load of potentially toxic elements, and thus can tolerate the uptake of such elements. The plant leaves show the highest concentrations for B, Ca, K, Mg, Mn, P, Rb and S. In the soil O-horizon Ag, Au, As, Bi, Cu, Ge, Hg, In, Pb, Sb, Se, Sn, Te and W are enriched with respect to the C-horizon, whilst Mn and Rb are depleted. Cadmium, Sr and Zn are enriched in willow and Cs, Na and Tl in heather. In terms of concentration gradients from the coast inland, two different patterns are detected: 1) short range with an almost exponential decrease of concentrations from the coast, which appears to be typical for seaspray-related element input, and 2) long range with an almost linear decrease of concentrations with distance from the coast. These patterns differ among the four species, even for one and the same element. Inter-element correlation is different from material to material. Along the transect each of the different plants at the same site individually adapts to the available element combination. High linear correlations in the plants occur between the lanthanides (La, Ce, Y), and interestingly, between P and Ti. The plant/soil system appears highly non-linear and self-regulated. - Highlights: • Plant–soil element uptake and interactions were studied along a 200 km transect. • 53 elements were analysed in leaves of 4 plants and 2 soil horizons. • Element relations within and between the materials revealed

  15. Effects of Cd (Ⅱ) on the physico-biochemical behaviors of Arthrobacter sp.and Bacillus sp.%镉胁迫对节杆菌(Arthrobacter sp.)和芽孢杆菌(Bacillus sp.)生理生化特性的影响

    Institute of Scientific and Technical Information of China (English)

    杜瑞英

    2012-01-01

    将节杆菌和芽孢杆菌分别暴露于不同质量比的镉溶液中,进行不同暴露时间的急性毒性试验.结果表明,20 mg/kg的Cd(Ⅱ)处理会使节杆菌中还原型谷胱甘肽(GSH)质量浓度显著降低,细胞膜脂质过氧化产物——硫代巴比妥酸活性物质(TBARS)浓度显著升高;0.2mg/kg的Cd(Ⅱ)处理会使芽孢杆菌中GSH质量浓度、过氧化氢酶(CAT)活性显著降低.节杆菌的可溶性蛋白、可溶性糖质量浓度随暴露时间延长而减少,GSH质量浓度、CAT和超氧化物歧化酶(SOD)活性随暴露时间延长而增加,TBARS浓度呈先减后增的变化趋势;芽孢杆菌的可溶性蛋白质量浓度、CAT活性和TBARS浓度呈先增后减的变化趋势,可溶性糖、GSH质量浓度和SOD活性呈先减后增的变化趋势.镉处理对节杆菌和芽孢杆菌具有一定的胁迫作用,两种菌通过启动不同的抗性系统来抵抗外界胁迫.%This paper is engaged in the study of the effects of Cd(II) on the physico-biochemical behaviors of Arthrobacter sp. through tox-icity testing. The toxicity test has been arranged by putting the an-tioxidant system of Arthrobacter sp. and Bacillus sp. under the exposure to different concentrations of Cd(II) for different lengths of testing time. The results of our testing show that Cd(II) has a strong impact on the antioxidant system of Arthrobacter sp. and Bacillus sp. . However, it is possible to reduce GSH content and increase TBARS content of Arthrobacter sp. significantly by letting Cd(II) treated with 20 mg/kg. Our testing proves that it is possible to reduce the GSH content and CAT activity of Bacillus sp. significantly by treating Cd(II) with 0.2 mg/kg, for the Arthrobacter sp. , the soluble protein and soluble sugar content can be reduced through prolonging the time of exposure. On the contrary, it is also possible to increase the GSH content and the CAT & SOD activity by means of prolonging the exposure, with the TBARS content

  16. Radiocesium concentrations in the bark, sapwood and heartwood of three tree species collected at Fukushima forests half a year after the Fukushima Dai-ichi nuclear accident

    International Nuclear Information System (INIS)

    Radiocesium (134Cs and 137Cs) distribution in tree stems of Japanese cedar (aged 40–56 y), red pine (42 y), and oak (42 y) grown in Fukushima Prefecture were investigated approximately half a year after the Fukushima Dai-ichi nuclear accident. Japanese cedar, red pine, and oak were selected from five sites, one site, and one site, respectively. Three trees at each site were felled, and bark, sapwood (the outer layer of wood in the stem), and heartwood (the inner layer of wood in the stem) separately collected to study radiocesium concentrations measured by gamma-ray spectrometry. The radiocesium deposition densities at the five sites were within the range of 16–1020 kBq m−2. The radiocesium was distributed in bark, sapwood, and heartwood in three tree species, indicating that very rapid translocation of radiocesium into the wood. The concentration of radiocesium in oak (deciduous angiosperm) bark was higher than that in the bark of Japanese cedar and red pine (evergreen gymnosperms). Both sapwood and heartwood contained radiocesium, and the values were much lower than that in the bark samples. The results suggest that radiocesium contamination half a year after the accident was mainly attributable to the direct radioactive deposition. The radiocesium concentrations in the Japanese cedar samples taken from five sites rose with the density of radiocesium accumulation on the ground surface. To predict the future dynamics of radiocesium in tree stems, the present results taken half a year after the accident are important, and continuous study of radiocesium in tree stems is necessary. -- Highlights: ► Effect of the Fukushima nuclear accident 2011 on Fukushima forests was investigated. ► The concentrations of radiocesium in the tree stem were examined. ► Bark, sapwood, heartwood contained radiocesium half a year after the accident. ► The level of radiocesium related to the amount of the radiocesium deposition

  17. Cloning, sequencing, expression, and regulation of the structural gene for the copper/topa quinone-containing methylamine oxidase from Arthrobacter strain P1, a gram-positive facultative methylotroph.

    OpenAIRE

    Zhang, X.; Fuller, J.H.; McIntire, W. S.

    1993-01-01

    Deoxyoligonucleotides corresponding to amino acid sequences of methylamine oxidase and polyclonal anti-methylamine oxidase antibodies were used to probe Arthrobacter strain P1 plasmid and chromosomal DNA libraries. Two open reading frames, maoxI and maoxII, which are greater than 99% homologous, were cloned from the chromosomal library. The deduced amino acid sequences of the coding regions are identical except for two residues near the C termini. On the other hand, the 5'- and 3'-flanking re...

  18. The USDA national animal germplasm program and the aquatic species collection. In: T.R. Tiersch and C.C. Green (eds.) Cryopreservation in Aquatic Species, 2nd Edition. World Aquaculture Society, Baton Rouge, LA

    Science.gov (United States)

    Diverse genetic resources and the genetic variability within species are the raw materials by which the productivity of aquatic species populations can be increased for food production. Due to the importance of these resources there is growing international awareness that these resources are importa...

  19. Species of bark beetles (Scolytinae) collected in the Bohemian Forest at Smrčina/Hochficht two years after the Kyrill hurricane

    Czech Academy of Sciences Publication Activity Database

    Vojtěch, O.; Křenová, Zdeňka; Jakuš, R.

    2013-01-01

    Roč. 19, č. 3 (2013), s. 149-164. ISSN 1211-7420 R&D Projects: GA MŠk(CZ) ED1.1.00/02.0073 Institutional support: RVO:67179843 Keywords : Šumava National Park * mountain spruce forest * species diversity * natural disturbances * rare species Subject RIV: EH - Ecology, Behaviour

  20. Species of bark beetles (Scolytinae) collected in the Bohemian Forest at Smrčina/Hochficht two years after the Kyrill hurricane

    Czech Academy of Sciences Publication Activity Database

    Vojtěch, O.; Křenová, Zdeňka; Jakuš, R.

    2013-01-01

    Roč. 19, č. 3 (2013), s. 149-163. ISSN 1211-7420 R&D Projects: GA MŠk(CZ) ED1.1.00/02.0073 Institutional support: RVO:67179843 Keywords : Šumava National Park * mountain spruce forest * species diversity * natural disturbances * rare species Subject RIV: EH - Ecology, Behaviour

  1. Morphological and molecular description of eight new species of Gyrodactylus von Nordmann, 1832 (Platyhelminthes: Monogenea) from poeciliid fishes, collected in their natural distribution range in the Gulf of Mexico slope, Mexico.

    Science.gov (United States)

    García-Vásquez, Adriana; Razo-Mendivil, Ulises; Rubio-Godoy, Miguel

    2015-09-01

    Eight new species of Gyrodactylus are described from Poecilia mexicana, Poeciliopsis gracilis, Pseudoxiphophorus bimaculatus [syn. = Heterandria bimaculata], and Xiphophorus hellerii collected in the Nautla and La Antigua River Basins in Veracruz, and in the Tecolutla River Basin in Puebla, Mexico. Analyzing the morphology of the marginal hooks, Gyrodactylus pseudobullatarudis n. sp. and Gyrodactylus xtachuna n. sp. are both very similar to Gyrodactylus bullatarudis; Gyrodactylus takoke n. sp. resembles Gyrodactylus xalapensis; Gyrodactylus lhkahuili n. sp. is similar to Gyrodactylus jarocho; and both Gyrodactylus microdactylus n. sp. and Gyrodactylus actzu n. sp. are similar to Gyrodactylus poeciliae in that all three species possess extremely short shaft points. A hypothesis of the systematic relationships of the eight new Gyrodactylus species and some of the known gyrodactylids infecting poeciliids was constructed with sequences of the Internal Transcribed Spacers (ITS1 and ITS2) and the 5.8S ribosomal gene of the rRNA. Phylogenetic trees showed that the new and previously described species of Gyrodactylus infecting poeciliid fishes do not form a monophyletic assemblage. Trees also showed that the eight new species described morphologically correspond to well-supported monophyletic groups; and that morphologically similar species are also phylogenetically close. Additionally, we correct previous erroneous records of the presence of Gyrodactylus bullatarudis on wild Poecilia mexicana and Xiphophorus hellerii collected in Mexico, as re-examination of the original specimens indicated that these corresponded to Gyrodactylus pseudobullatarudis n. sp. (infecting Poecilia mexicana and Xiphophorus hellerii) and to Gyrodactylus xtachuna n. sp. (on Xiphophorus hellerii). Finally, given the widespread anthropogenic translocation of poeciliid fishes for the aquarium trade and mosquito control programs, as well as the existence of invasive, feral poeciliid populations

  2. Sibling species of the Anopheles funestus group, and their infection with malaria and lymphatic filarial parasites, in archived and newly collected specimens from northeastern Tanzania

    DEFF Research Database (Denmark)

    Derua, Yahya A; Alifrangis, Michael; Magesa, Stephen M;

    2015-01-01

    on amplification of species-specific nucleotide sequence in the ITS2 region on rDNA genes. The specimens were furthermore examined for infection with Plasmodium falciparum and Wuchereria bancrofti by PCR. RESULTS: The identified sibling species were An. funestus s.s., Anopheles parensis, Anopheles rivulorum...... composition were minor. No P. falciparum was detected in archived specimens, while 8.3% of the newly collected An. funestus s.s. were positive for this parasite. The overall W. bancrofti infection rate decreased from 14.8% in the 2005-2007 archived specimens to only 0.5% in the newly collected specimens...... and decreasing W. bancrofti infection in An. funestus s.s. in the study period, most likely reflecting infection levels with these parasites in the human population in the area....

  3. Levan fructotransferase from Arthrobacter oxydans J17-21 catalyzes the formation of the di-D-fructose dianhydride IV from levan.

    Science.gov (United States)

    Jang, Ki-Hyo; Ryu, Eun-Ja; Park, Buem-Seek; Song, Ki-Bang; Kang, Soon Ah; Kim, Chul Ho; Uhm, Tai-Boong; Park, Yong-Il; Rhee, Sang-Ki

    2003-04-23

    A new levan fructotransferase (LFTase) isolated from Arthrobacter oxydans J17-21 was characterized for the production of difructose dianhydride IV (DFA IV). LFTase was purified to apparent homogeneity by Q-Sepharose ion exchange chromatography, Mono-Q HR 5/5 column chromatography, and gel permeation chromatography. The enzyme had an apparent molecular mass of 54000 Da. The optimum pH for the enzyme-catalyzed reaction was pH 6.5, and the optimum temperature was observed at 45 degrees C. The LFTase was activated by the presence of CaCl(2) and EDTA-2Na but inhibited strongly by MnCl(2) and CuSO(4) at 1 mM and completely by FeSO(4) and Ag(2)SO(4) at 1 mM. A bacterial levan from Zymomonas mobilis was incubated with an LFTase; final conversion yield from the levan to DFA IV was 35%. Neither inulin, levanbiose, sucrose, dextran, nor starch was hydrolyzed by LFTase. DFA IV was very stable at acidic pH and high temperature, thus indicating that DFA IV may be suitable for the food industry and related areas. PMID:12696949

  4. Cloning, nucleotide sequence and expression of a new L-N-carbamoylase gene from Arthrobacter aurescens DSM 3747 in E. coli.

    Science.gov (United States)

    Wilms, B; Wiese, A; Syldatk, C; Mattes, R; Altenbuchner, J; Pietzsch, M

    1999-02-19

    An L-N-carbamoyl amino acid amidohydrolase (L-N-carbamoylase) from Arthrobacter aurescens DSM 3747 was cloned in E. coli and the nucleotide sequence was determined. After expression of the gene in E. coli the enzyme was purified to homogeneity and characterized. The enzyme was shown to be strictly L-specific and exhibited the highest activity in the hydrolysis of beta-aryl substituted N alpha-carbamoyl-alanines as e.g. N-carbamoyl-tryptophan. Carbamoyl derivatives of beta-alanine and charged aliphatic amino acids were not accepted as substrates. The N-carbamoylase of A. aurescens DSM 3747 differs from all known enzymes with respect to its substrate specificity although amino acid sequence identity scores of 35-38% to other N-carbamoylases have been detected. The enzyme consists of two subunits of 44,000 Da, and has an isoelectric point of 4.3. The optima of temperature and pH were determined to be 50 degrees C and pH 8.5 respectively. At 37 degrees C the enzyme was completely stable for several days. PMID:10194852

  5. Characteristics of an organic solvent-tolerant β-fructofuranosidase from Arthrobacter arilaitensis NJEM01 and efficient synthesis of prebiotic kestose.

    Science.gov (United States)

    Chu, Jianlin; Wu, Xueming; Wu, Bin; Wang, Rui; He, Bingfang

    2014-06-18

    An organic solvent-tolerant β-fructofuranosidase (β-FFase) from Arthrobacter arilaitensis NJEM01 was purified, characterized, cloned, and overexpressed in Escherichia coli. The mature β-FFase contained 495 amino acid residues with an estimated molecular mass of 55 kDa. The purified β-FFase from strain NJEM01 was very stable in the buffer systems (pH 5.0-9.5) and showed high stability below 45 °C. Furthermore, the enzyme exhibited relatively high solvent stability in various aqueous organic mixtures and retained nearly 100% of its initial activity after incubation for 10 days in 20% (v/v) DMSO. In addition, the β-FFase exhibited high transfructosylation activity, synthesized prebiotic products of mainly 6-kestose (up to 476 g/L), and showed fructosyl receptor specificity to C-glucosyl flavone. A relatively high yield of FOS was achieved by the β-FFase from bacterium with a high concentration of sucrose. It made the β-FFase an exploitable biocatalyst for the production of glycosides of natural products and prebiotic kestose. PMID:24854707

  6. The types of Palaearctic species of the families Apionidae, Rhynchitidae, Attelabidae and Curculionidae in the collection of Étienne Louis Geoffroy (Coleoptera, Curculionoidea

    Directory of Open Access Journals (Sweden)

    Alonso-Zarazaga, M. A.

    2008-06-01

    Full Text Available The study of 131 more or less complete Curculionoid specimens of the collection Étienne Louis Geoffroy, conserved in the Muséum d’Histoire Naturelle de Paris (Entomologie has permitted the identification of several nominal species that were nomina dubia and the establishment of several new synonymies and combinations, and, in some cases, the reversion of precedence following Art. 23.9 of the Code, declaring nomina protecta and nomina oblita. New synonymies are (the first term is the valid name: Lixus filiformis (Fabricius, 1781 = Curculio longus Gmelin, 1790; Lasiorhynchites cavifrons (Gyllenhal, 1833 nom. protectum = Rhinomacer viridis Geoffroy, 1785, nom. oblitum; Byctiscus betulae (Linnaeus, 1758 = Rhinomacer auratus Geoffroy, 1785; Neocoenorrhinus pauxillus (Germar, 1824 nom. protectum = Rhinomacer caeruleus Geoffroy, 1785, nom. oblitum; Deporaus betulae (Linnaeus, 1758 = Curculio nigrostriatus Goeze, 1777 = Rhinomacer niger Geoffroy, 1785 = Curculio fuliginosus Gmelin, 1790; Coniocleonus hollbergii (F√•hraeus, 1842 = Curculio sulcatus Goeze, 1777 = Curculio sulcatus Geoffroy, 1785 = Curculio sulcatus Gmelin, 1790; Larinus iaceae (Fabricius, 1775 = Curculio carduelis Goeze, 1777; Hypera postica (Gyllenhal, 1813, nom. protectum = Curculio fasciolatus Geoffroy, 1785, nom. oblitum; Charagmus griseus (Fabricius, 1775 = Curculio cupreosquamosus Goeze, 1777 = Curculio intersectus Geoffroy, 1785 = Curculio squamosus Gmelin, 1790; Sitona hispidulus (Fabricius, 1777 = Curculio griseus Goeze, 1777 = Curculio modestus Geoffroy, 1785 = Curculio geoffroaei Gmelin, 1790; Aulacobaris cuprirostris (Fabricius, 1787 = Curculio viridisericeus Goeze, 1777; Cleopomiarus plantarum (Germar, 1824, nom. protectum =

  7. Using LC and Hierarchical Cluster Analysis as Tools to Distinguish Timbó Collections into Two Deguelia Species: A Contribution to Chemotaxonomy

    Directory of Open Access Journals (Sweden)

    Danielle da Costa

    2016-04-01

    Full Text Available The species Deguelia utilis and Deguelia rufescens var. urucu, popularly known as “timbó,” have been used for many years as rotenone sources in insecticide formulations. In this work, a method was developed and validated using a high-performance liquid chromatography-photodiode array (HPLC-PDA system, and results were analyzed using hierarchical cluster analysis (HCA. By quantifying the major rotenoids of these species, it was possible to establish a linear relation between them. The ratio between the concentrations of rotenone and deguelin for D. utilis is approximately 1:0.8, respectively, while for D. rufescens var. urucu it is 2:1. These results may help to distinguish these species contributing to their taxonomic identification.

  8. Using LC and Hierarchical Cluster Analysis as Tools to Distinguish Timbó Collections into Two Deguelia Species: A Contribution to Chemotaxonomy.

    Science.gov (United States)

    da Costa, Danielle; E Silva, Consuelo; Pinheiro, Aline; Frommenwiler, Débora; Arruda, Mara; Guilhon, Giselle; Alves, Cláudio; Arruda, Alberto; Da Silva, Milton

    2016-01-01

    The species Deguelia utilis and Deguelia rufescens var. urucu, popularly known as "timbó," have been used for many years as rotenone sources in insecticide formulations. In this work, a method was developed and validated using a high-performance liquid chromatography-photodiode array (HPLC-PDA) system, and results were analyzed using hierarchical cluster analysis (HCA). By quantifying the major rotenoids of these species, it was possible to establish a linear relation between them. The ratio between the concentrations of rotenone and deguelin for D. utilis is approximately 1:0.8, respectively, while for D. rufescens var. urucu it is 2:1. These results may help to distinguish these species contributing to their taxonomic identification. PMID:27144548

  9. WATER DEPTH, SPECIES IDENTIFICATION, SPECIES IDENTIFICATION - LIFE STAGE, species abundance and SPECIES IDENTIFICATION - WET WEIGHT trawl data collected in the North Pacific Ocean on the CHARTER/FISHING BOATS cruises FR0206-01, FR0206-02 and others as part of the NEP project from 2000-05-29 to 2002-08-18 (NODC Accession 0114641)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0114641 includes meteorological, biological and trawl data collected aboard the CHARTER/FISHING BOATS during cruises FR0206-01, FR0206-02, FR0208,...

  10. Bioactive compounds and antifungal activity of three different seaweed species Ulva lactuca, Sargassum tenerrimum and Laurencia obtusa collected from Okha coast, Western India

    OpenAIRE

    Megha Barot; Nirmal Kumar JI; Rita N. Kumar

    2016-01-01

    Objective: To evaluate bioactive compounds responsible for antifungal activity from seaweeds of Okha coast, Western India. Methods: Each species were extracted with different solvents with increasing polarity: hexane, ethyl acetate, chloroform and methanol using Soxhlet apparatus. The antifungal activity was determined by agar diffusion plate method by using fluconazole, ketoconazole and amphotericin B as standards. Gas chromatography-mass spectrometer analysis was done for ...

  11. A mean field model for the collective behaviour of interacting multi-species particles: mathematical results and application to the inverse problem

    OpenAIRE

    Fedele, Micaela

    2011-01-01

    The study of the normalized sum of random variables and its asymptotic behaviour has been and continues to be a central chapter in probability and statistical mechanics. When those variables are independent the central limit theorem ensures that the sum with square-root normalization converges toward a Gaussian distribution. The main topic of this thesis is the generalization of the central limit theorem for spin random variable whose interaction is described by a multi-species mean-field Ham...

  12. Bioactive compounds and antifungal activity of three different seaweed species Ulva lactuca, Sargassum tenerrimum and Laurencia obtusa collected from Okha coast, Western India

    Directory of Open Access Journals (Sweden)

    Megha Barot

    2016-04-01

    Full Text Available Objective: To evaluate bioactive compounds responsible for antifungal activity from seaweeds of Okha coast, Western India. Methods: Each species were extracted with different solvents with increasing polarity: hexane, ethyl acetate, chloroform and methanol using Soxhlet apparatus. The antifungal activity was determined by agar diffusion plate method by using fluconazole, ketoconazole and amphotericin B as standards. Gas chromatography-mass spectrometer analysis was done for identification of bioactive compounds present in crude extract. Results: The gas chromatography-mass spectrometer analysis of all the extracts revealed the presence of steroids, fatty acids and esters compounds. Among the three species, the maximum crude extract yield (53.46% and the largest inhibition zone (36 mm were recorded in methanol extract of Ulva lactuca, whereas the minimum crude extract yield and inhibition zone were recorded in chloroform extract of the same species as 0.5% and 10 mm, respectively. Methanol and ethyl acetate extract showed the maximum antifungal activity and the major important compounds like steroids, fatty acids and esters were detected with higher amount in all the extracts. Conclusions: The present study revealed that the different seaweed extracts showed moderate to significant antifungal activity against the strains tested as compared with the standard fungicides, and polar solvents methanol and ethyl acetate were comparatively efficient for extraction of different metabolites that are responsible for antifungal activity.

  13. Characterizing the Catalytic Potential of Deinococcus, Arthrobacter and other Robust Bacteria in Contaminated Subsurface Environments of the Hanford Site

    Energy Technology Data Exchange (ETDEWEB)

    Daly, Michael J.

    2007-07-23

    Progress is briefly summarized in these areas: ionizing radiation resistance in bacteria; a hypothesis regarding ionizing radiation resistance emerging for bacterial cells; transcriptome analysis of irradiated D. radiodurans and Shewanella oneidensis; the role of metal reduction in Mn-dependnet Deinococcal species; and engineered Deinococcus strains as models for bioremediation. Key findings are also reported regarding protein oxidation as a possible key to bacterial desiccation resistance, and the whole-genome sequence of the thermophile Deinococcus geothermalis.

  14. Identification of a Novel Di-D-Fructofuranose 1,2’:2,3’ Dianhydride (DFA III) Hydrolysis Enzyme from Arthrobacter aurescens SK8.001

    Science.gov (United States)

    Yu, Shuhuai; Wang, Xiao; Zhang, Tao; Stressler, Timo; Fischer, Lutz; Jiang, Bo; Mu, Wanmeng

    2015-01-01

    Previously, a di-D-fructofuranose 1,2’:2,3’ dianhydride (DFA III)-producing strain, Arthrobacter aurescens SK8.001, was isolated from soil, and the gene cloning and characterization of the DFA III-forming enzyme was studied. In this study, a DFA III hydrolysis enzyme (DFA IIIase)-encoding gene was obtained from the same strain, and the DFA IIIase gene was cloned and expressed in Escherichia coli. The SDS-PAGE and gel filtration results indicated that the purified enzyme was a homotrimer holoenzyme of 145 kDa composed of subunits of 49 kDa. The enzyme displayed the highest catalytic activity for DFA III at pH 5.5 and 55°C, with specific activity of 232 U mg-1. Km and Vmax for DFA III were 30.7 ± 4.3 mM and 1.2 ± 0.1 mM min-1, respectively. Interestingly, DFA III-forming enzymes and DFA IIIases are highly homologous in amino acid sequence. The molecular modeling and docking of DFA IIIase were first studied, using DFA III-forming enzyme from Bacillus sp. snu-7 as a template. It was suggested that A. aurescens DFA IIIase shared a similar three-dimensional structure with the reported DFA III-forming enzyme from Bacillus sp. snu-7. Furthermore, their catalytic sites may occupy the same position on the proteins. Based on molecular docking analysis and site-directed mutagenesis, it was shown that D207 and E218 were two potential critical residues for the catalysis of A. aurescens DFA IIIase. PMID:26555784

  15. Class 1 integrons and tetracycline resistance genes in Alcaligenes, Arthrobacter, and Pseudomonas spp. isolated from pigsties and manured soil

    DEFF Research Database (Denmark)

    Agersø, Yvonne; Sandvang, Dorthe

    2005-01-01

    The presence of tetracycline resistance (Tc-r) genes and class I integrons (in-1), and their ability to cotransfer were investigated in Tc-r gram-negative (185 strains) and gram-positive (72 strains) bacteria from Danish farmland and pigsties. The isolates belonged to the groups or species...... and/or Pseudomonas putida. We conclude that soil bacteria in close contact to manure or pigsty environment may thus have an important role in horizontal spread of resistance. Use of tetracyclines in food animal production may increase not only Tc-r but also multidrug resistance (caused by the presence...

  16. Lista das espécies de Culicidae (Diptera depositadas na Coleção de Entomologia Pe. J. S. Moure Species list of the Culicidae (Diptera deposited at the Entomological Collection "Pe. J. S. Moure"

    Directory of Open Access Journals (Sweden)

    Ana Cristina Tissot

    2008-01-01

    Full Text Available A Coleção de Entomologia do Departamento de Zoologia da Universidade Federal do Paraná (DZUP abriga cerca de 5.000.000 de exemplares de insetos. A coleção de Diptera está representada por aproximadamente 2.000.000 de exemplares, sendo Muscidae; Culicidae e Syrphidae as famílias mais representativas. A ordem Diptera possui cerca de 150.000 espécies descritas e a coleção conta com cerca de 103.000 exemplares representantes de 78 famílias. A lista das espécies pertencentes à família Culicidae conta com 9.579 exemplares, distribuídos em 2 subfamílias, 7 tribos, 17 gêneros, 26 subgêneros e 85 espécies. A maioria dos exemplares foi coletado em remanescentes de mata localizados em áreas urbanas e rurais, ambientes silvestres e urbanos de regiões litorâneas ou áreas urbanas pertencentes a diferentes cidades do Estado do Paraná, e algumas espécies incluídas foram capturadas nos Estados de São Paulo, Mato Grosso, Santa Catarina e no Distrito Federal. As informações específicas de cada exemplar, como local de coleta, latitude, longitude, coletor, data de coleta, método de coleta e nome do pesquisador que identificou, e também informações taxonômicas como ordem, tribo, gênero, subgênero e espécie, foram informatizados em um banco de dados.The Entomological Collection of Departamento de Zoologia of Universidade Federal do Paraná (DZUP accommodates about 5,000,000 insect specimens. The collection of Diptera is represented by approximately 2,000,000 specimens, being Muscidae, Culicidae and Syrphidae the most representative families. The Diptera order consists of approximately 150,000 described species and in the Collection about 103,000 specimens within 78 families are registered. The list of species of the family Culicidae presents 9,579 specimens within 2 subfamilies, 7 tribes, 17 genera, 26 subgenera and 85 species. Most specimens were captured in forest remnants in urban and rural areas, wild and urban environments in

  17. Variation in cyanobacterial hepatotoxin (microcystin) content of water samples and two species of fishes collected from a shallow lake in Algeria.

    Science.gov (United States)

    Amrani, Amina; Nasri, Hichem; Azzouz, Amina; Kadi, Yacine; Bouaïcha, Noureddine

    2014-04-01

    Microcystins (MCs) produced from cyanobacteria can accumulate in freshwater fish tissues. In this study, variations in these toxins content were examined monthly in water samples and two species of fish in Lake Oubeira, Algeria, from April 2010 to March 2011. During the study period, MCs were analyzed using protein phosphatase type 2A (PP2A) inhibition assay. In lake water, total (dissolved and intracellular toxins) MC concentrations by PP2A ranged from 0.028 to 13.4 μg equivalent MC-LR/l, with a peak in September 2010. MC-LR was the dominant variant (90 % of the total) in water samples, followed by MC-YR and MC-(H4)YR. The highest MC concentration in the omnivorous common carp (Cyprinus carpio) was found in the order intestine > hepatopancreas > muscle; however, in the carnivorous European eel (Anguilla anguilla) the order was liver > intestine > muscle. Highest MC concentrations in the intestine tissue of the common carp were found between August and November 2010 where high MC concentrations were detected in water samples, whereas high levels of MCs in the liver of the European eel were found later between January and February 2011. During the entire period of study, the World Health Organization (WHO) lifetime limit for tolerable daily intake was exceeded only in common carp muscle. PMID:24445842

  18. Neutralization of calcite in mineral aerosols by acidic sullur species collected in China and Japan studied by ca K-edge X-ray absorption near-edge structure.

    Science.gov (United States)

    Takahashi, Yoshio; Miyoshi, Takuro; Higashi, Masayuki; Kamioka, Hikari; Kanai, Yutaka

    2009-09-01

    Calcium species in mineral aerosols collected simultaneously in Aksu (near the Taklimakan Desert), Qingdao (eastern China), and Tsukuba (Japan) during dust and nondust periods were determined using Ca K-edge X-ray absorption near-edge structure (XANES). From the fitting of XANES spectra, it was found that (i) calcite and gypsum were the main Ca species in the aerosol samples, and (ii) the gypsum fraction versus total Ca minerals [Gyp]/[Ca2+]t increased progressively in the order Aksu aerosols for all the samples except for that taken in Aksu during the dust period. The decrease of the [Gyp]/[Ca2+]t ratio with an increase in particle size showed that the neutralization effect proceeds from the particle surface. For the Aksu sample in the dust period, however, (i) the [Gyp]/[Ca2+]t ratios obtained by XANES measured in the fluorescence (FL; regarded as bulk analysis) and CEY modes were similar and (ii) size dependence was not found, showing that neutralization is not important for the sample because of the large supply of mineral aerosol with little neutralization effect in Aksu. It was also found that the pH of the aerosol and the ratio of (NH4)2SO4 to gypsum were positively and negatively correlated with the Ca (or calcite) content, respectively. The speciation of Ca by XANES revealed the neutralization processes of acidic sulfur species by calcite during the long-range transport of mineral aerosols. PMID:19764213

  19. Flebotomíneos (Diptera, Psychodidae na Amazônia: II. Listagem das espécies coletadas na bacia petrolífera no Rio Urucu, Amazonas, Brasil, utilizando diferentes armadilhas e iscas Sandflies (Diptera, Psychodidae in the Amazon: II. Cheek list of the species collected in the petroleum basin of the Urucu River, Amazonas, Brazil using differents traps and baits

    Directory of Open Access Journals (Sweden)

    Eloy G. Castellón

    2000-06-01

    Full Text Available A sandfly survey was carried out in 100 x 150 m patches of primary forest submitted to recent deforestation in order to determine its species composition 10-30 days after clearing. The following collecting methods were used: CDC traps whit black light; Malaise traps placed at 0.5, 1, 5 and 10m up from the the soil surface; Pennsylvania traps whit black light; Malaise traps, tree-base catches and human baits. A total of 2810 specimens of Lutzomyia França, 1924 and one species of Brumptomyia França & Parrot, 1921, were collected. In general, the predominant species were L. chagasi (Costa Lima, 1941 (25.9%, L. davisi (Root, 1934 (12.3%, L. ayrozai (Barretto & Coutinho, 1940 (9.32% and L. ubiquitalis (Mangabeira, 1942, (6.93%. The higher diversity in species was obtained with the CDC traps placed at 1 m and 5 m heights. In the human bait collections, the species of the subgenus Psychodopygus Mangabeira, 1941, predominated. Lutzomyia ubiquitalis was collected in both, Malaise and Pennsylvania traps. In the tree-base collections, L. damascenoi Mangabeira, 1941, L. dendrophyla (Mangabeira, 1942 and L. souza-castroi (Damasceno & Causey, 1944 were the predominant species. Of all collected species, five of the subgenus Lutzomyia, six of the subgenus Psychodopygus and one of genus Trichophoromyia Barretto, 1962 have been previously incriminayed as vectors of leishmaniasis disease or have been found associated with parasites of the genus Leishmania (Root, 1903.

  20. Três espécies novas do gênero Chorisoneura (Blattellidae, Chorisoneuriinae coletadas em ninhos de Sphecidae (Hymenoptera do Estado do Acre, Brasil Three new species of the genus Chorisoneura (Blattellidae, Chorisoneuriinae collected in Sphecidae nests (Hymenoptera from Acre State, Brazil

    Directory of Open Access Journals (Sweden)

    Sonia Maria Lopes

    Full Text Available Three new species of Chorisoneura Brunner, 1865 from Acre State, Brazil collected in nests of Podium Fabricius, 1804 (Hymenoptera, Sphecidae are described. Illustrations of genitalia are presented.

  1. Species ID Project

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Up to 10 individuals of a fin fish, shark, and crustacean species are collected and morphologically identified by Southeast Fisheries Science Center. Water-soluble...

  2. Influence of single-walled carbon nanotubes on the growth and phenol biodegradation characteristics of Arthrobacter sp.W1%单壁碳纳米管对Arthrobacter sp.W1生长及苯酚降解功能的影响

    Institute of Scientific and Technical Information of China (English)

    李端行; 王经伟; 沈文丽; 张照婧; 厉舒祯; 李会杰; 刘紫嫣; 马桥; 曲媛媛

    2015-01-01

    单壁碳纳米管(SWCNTs)对大肠杆菌等模式菌株的生长抑制作用明显,为了解SWCNTs对具有环境功能的菌株的作用,以苯酚降解菌Arthrobacter sp.Wl为对象,考察不同浓度SWCNTs下菌株W1的生长曲线和苯酚降解曲线,并通过扫描电镜观察、细胞凋亡检测、DNA泄漏量分析和活性氧产量分析考察作用机制.结果表明,特定浓度范围的SWCNTs (0.5-5.0 mg/L)会加快W1的苯酚降解速率,且1.5-2.0 mg/L SWCNTs不抑制Wl的生长.SWCNTs在溶液中形成团簇并吸附Wl细胞,且对Wl产生以物理穿刺为主的毒性作用,但在特定浓度范围的SWCNTS条件下,SWCNTs-菌株-苯酚体系增加了菌体与苯酚的接触机会,从而对Wl生长和苯酚降解产生明显的促进作用.本研究结果可为进一步揭示SWCNTs的环境微生物效应提供理论依据.

  3. BIOMASS, SPECIES IDENTIFICATION, SPECIES IDENTIFICATION - LIFE STAGE, TAXONOMIC CODE and species abundance tows data collected in the Gulf of Alaska on the ALPHA HELIX and WECOMA cruises HX201, HX203 and others as part of the NEP project from 1997-10-14 to 2004-10-08 (NODC Accession 0113956)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0113956 includes tows and biological data collected aboard the ALPHA HELIX and WECOMA during cruises HX201, HX203, HX205, HX208, HX211, HX215, HX217,...

  4. WATER DEPTH, SPECIES IDENTIFICATION, SPECIES IDENTIFICATION - LIFE STAGE, TAXONOMIC CODE and species abundance tows data collected in the North Pacific Ocean on the ATLANTIS, ELAKHA and other platforms cruises AR9807, AT7-21 and others as part of the NEP project from 1997-11-15 to 2003-10-23 (NODC Accession 0114259)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0114259 includes meteorological, tows and biological data collected aboard the ATLANTIS, ELAKHA, MCARTHUR, NEW HORIZON, UNKNOWN and WECOMA during...

  5. BIOMASS, SPECIES IDENTIFICATION, TAXONOMIC CODE, SPECIES IDENTIFICATION - LIFE STAGE and species abundance tows data collected in the Gulf of Alaska on the ALPHA HELIX and WECOMA cruises HX201, HX203 and others as part of the NEP project from 1997-10-10 to 2004-10-07 (NODC Accession 0113896)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0113896 includes tows and biological data collected aboard the ALPHA HELIX and WECOMA during cruises HX201, HX203, HX205, HX208, HX211, HX215, HX217,...

  6. SPECIES IDENTIFICATION - ORGANISM LENGTH, SPECIES IDENTIFICATION, WATER DEPTH, SPECIES IDENTIFICATION - LIFE STAGE and other fish examination data collected in the Gulf of Alaska and North Pacific Ocean on the CHARTER/FISHING BOATS cruises GP0108, GP0207-01 and others as part of the NEP project from 2001-07-18 to 2004-11-08 (NODC Accession 0115200)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0115200 includes meteorological, fish examination and biological data collected aboard the CHARTER/FISHING BOATS during cruises GP0108, GP0207-01,...

  7. SEA STATE, SPECIES IDENTIFICATION, SPECIES IDENTIFICATION - LIFE STAGE, species abundance and WIND SPEED trawl data collected in the Gulf of Alaska on the PANDALUS cruises PA0101, PA0102 and others as part of the NEP project from 1999-08-27 to 2004-09-17 (NODC Accession 0115221)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0115221 includes meteorological, biological, physical and trawl data collected aboard the PANDALUS during cruises PA0101, PA0102, PA0103, PA0104,...

  8. SPECIES IDENTIFICATION - LIFE STAGE, TAXONOMIC CODE, SPECIES IDENTIFICATION - SEX and species abundance pump cast data collected in the North Atlantic Ocean on the EDWIN LINK, OCEANUS and SEWARD JOHNSON cruises EL9904, EL9905 and others as part of the GB project from 1995-06-10 to 1999-05-28 (NODC Accession 0107116)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0107116 includes pump cast and biological data collected aboard the EDWIN LINK, OCEANUS and SEWARD JOHNSON during cruises EL9904, EL9905, OC303 and...

  9. ANIMALS - INDIVIDUAL - COUNTS, SPECIES IDENTIFICATION - ORGANISM LENGTH, SPECIES IDENTIFICATION - LIFE STAGE, TAXONOMIC CODE and species abundance profile and discrete sample data collected in the South Atlantic Ocean and South Pacific Ocean on the LAURENCE M. GOULD cruises LMG0104 and LMG0203 as part of the Southern Ocean GLOBEC project from 2001-05-01 to 2002-05-10 (NODC Accession 0112167)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0112167 includes profile, discrete sample and biological data collected aboard the LAURENCE M. GOULD during cruises LMG0104 and LMG0203 in the South...

  10. INDIVIDUAL FISH EXAMINATION - WEIGHT, SPECIES IDENTIFICATION, SPECIES IDENTIFICATION - LIFE STAGE and SPECIES IDENTIFICATION - SEX fish examination data collected in the North Pacific Ocean on the CHARTER/FISHING BOATS cruises FR0206-01, FR0206-02 and others as part of the NEP project from 2000-05-29 to 2002-08-18 (NODC Accession 0114242)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0114242 includes fish examination and biological data collected aboard the CHARTER/FISHING BOATS during cruises FR0206-01, FR0206-02, FR0208, SE0005...

  11. Collection Development.

    Science.gov (United States)

    School Libraries in Canada, 2002

    2002-01-01

    Includes 21 articles that discuss collection development in Canadian school libraries. Topics include digital collections in school library media centers; print and electronic library resources; library collections; collaborative projects; print-disabled students; informing administrators of the importance of collection development; censorship;…

  12. BIOMASS, SPECIES IDENTIFICATION, SPECIES IDENTIFICATION - LIFE STAGE and species abundance tows data collected in the North Pacific Ocean on the CHARTER/FISHING BOATS cruises FR0206-01, FR0206-02 and others as part of the NEP project from 2000-05-29 to 2002-08-17 (NODC Accession 0113950)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0113950 includes tows and biological data collected aboard the CHARTER/FISHING BOATS during cruises FR0206-01, FR0206-02, FR0208, SE0005 and SE0007...

  13. Áreas prioritarias para colectar germoplasma de Amaranthus en México con base en la diversidad y riqueza de especies Priority areas to collect Amaranthus germplasm in Mexico based on diversity and species richness

    Directory of Open Access Journals (Sweden)

    Eduardo Espitia Rangel

    Full Text Available Esta investigación tuvo como objetivo utilizar el Sistema de Información Geográfico, para crear mapas de índices de diversidad y riqueza de especies del género Amaranthus en México, para proyectar las mejores áreas de colecta de germoplasma. La máxima riqueza de especies se encontró en el centro occidente del Estado de México incluyendo el Distrito Federal y la costa del Pacífico, entre Jalisco y Colima, así como en Sinaloa. El índice de biodiversidad de Brillouin mostró alta diversidad en la costa del Pacífico, Sinaloa, entre los estados de Jalisco y Colima, además el centro occidente de Nuevo León, la región de la Huasteca del sureste de Tamaulipas y noreste de Veracruz, así como la zona noroeste de la Península de Yucatán. Las áreas prioritarias que se proponen son: la costa central de Sinaloa, sur de la región biogeográfica de Sonora, parte centro occidente del Estado de México incluyendo el Distrito Federal, región biogeográfica del Eje Volcánico Transmexicano y la costa del pacífico centro entre los estados de Jalisco y Colima, finalmente en la región biogeográfica de la costa pacífica mexicana.This investigation had as objective to use the Geographical Information System, to create maps of indexes of diversity and wealth of species of genus Amaranthus in Mexico, to plan the best areas of germplasm collection. The maximum wealth of species was in west center of State of Mexico including Distrito Federal and the Pacific coast, between Jalisco and Colima, as well as in Sinaloa. The Brillouin index of biodiversity showed high diversity in the Pacific coast, Sinaloa, between the states of Jalisco and Colima, also the west center of Nuevo León, the region of Huasteca of southeast of Tamaulipas and northeast of Veracruz, as well as the northwest area of Yucatán Peninsula. The priority areas proposed are: the central coast of Sinaloa, south of biogeographic region of Sonora, west center section of State of Mexico

  14. Detection of cryptic species

    International Nuclear Information System (INIS)

    Morphologically similar cryptic species are common in insects. In Anopheles mosquitoes morphologically described species are complexes of cryptic species. Cryptic species are of great practical importance for two reasons: first, one or more species of the complex might not be a pest and control efforts directed at the complex as a whole would therefore be partly wasted; and second, genetic (and perhaps biological) control strategies directed against one species of the complex would not affect other species of the complex. At least one SIT effort has failed because the released sterile insect were of a different species and therefore did not mate with the wild insects being targeted. We use a multidisciplinary approach for detection of cryptic species complexes, focusing first on identifying variability in wild populations using RFLPs of mitochondrial and ribosomal RNA genes (mtDNA and rDNA); followed by confirmation using a variety of other techniques. For rapid identification of wild individuals of field collections, we use a DNA dot blot assay. DNA probes can be isolated by differential screening, however we are currently focusing on the sequencing of the rDNA extragenic spacers. These regions are repeated several hundred times per genome in mosquitoes and evolve rapidly. Molecular drive tends to keen the individual genes homogeneous within a species. (author)

  15. USGS invasive species solutions

    Science.gov (United States)

    Simpson, Annie

    2011-01-01

    Land managers must meet the invasive species challenge every day, starting with identification of problem species, then the collection of best practices for their control, and finally the implementation of a plan to remove the problem. At each step of the process, the availability of reliable information is essential to success. The U.S. Geological Survey (USGS) has developed a suite of resources for early detection and rapid response, along with data management and sharing.

  16. Temperature, salinity, and zooplankton species identification, number per sample, and wet weight per sample collected by MOCNESS net tow in the Gulf of Alaska from 13 October 1997 to 13 May 1999 (NODC Accession 0000102)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Temperature profile, zooplantkon, and other data were collected using MOCNESS net tows casts from the ALPHA HELIX in the Gulf of Alaska. Data were collected from 13...

  17. Generative collectives

    NARCIS (Netherlands)

    W. van Osch; M. Avital

    2010-01-01

    Analyzing generative group activities against the backdrop of an increasingly connected world, this theory development paper introduces the concept of "generative collectives" as a new framework for classifying internet-based collectives and a novel theoretical lens for explaining why some internet-

  18. Collective Bargaining.

    Science.gov (United States)

    Zirkel, Perry A.

    This chapter discusses litigation touching on collective bargaining issues. The chapter is organized to follow the collective bargaining process, from cases dealing with union organizing to cases involving arbitration. Issues covered also include determination of bargaining units, scope of bargaining, union security, and unfair labor practices in…

  19. VARIABILIDAD MORFOLOGICA DE LA COLECCIÓN COLOMBIANA DE LULO (Solanum quitoense Lam. Y ESPECIES ELACIONADAS DE LA SECCIÓN Lasiocarpa MORPHOLOGICAL VARIABILITY OF THE COLOMBIAN COLLECTION OF LULO (Solanum quitoense Lam. AND RELATED LASIOCARPA SECTION SPECIES

    Directory of Open Access Journals (Sweden)

    Mario Lobo Arias

    2007-12-01

    Full Text Available Se categorizó la variabilidad morfológica de la colección colombiana de lulo Solanum quitoense Lam, especies relacionadas de la sección Lasiocarpa y entidades biológicas Solanaceae de otras secciones, como grupo externo. Se encontró amplia variabilidad morfológica cualitativa y cuantitativa en las dos variedades botánicas del lulo y las otras entidades biológicas de Lasiocarpa. Los 58 atributos morfológicos cualitativos fueron polimórficos en éste conjunto, con presencia de 73,9% del total de estados incluidos en los descriptores y 4,2 morfoalelos por variable. En el caso de S. quitoense, 52 de los 58 caracteres cualitativos exhibieron variabilidad, con 60% de las variantes totales de la lista de descriptores y 3,4 morfoalelos por característica. Igualmente, se encontró polimorfismo considerable en S. hirtum, S. pseudolulo y potencial de utilización, en dos materiales estudiados de S. vestissimum. A nivel cuantitativo se determinó diversidad en todas las variables estudiadas. El análisis de componentes principales de los caracteres cuantitativos reveló una alta contribución de las variables de fruto a la explicación de la variabilidad total de esta índole. Los fenogramas cualitativo, cuantitativo y cualitativo-cuantitativo, no detectaron materiales idénticos en los taxa estudiados. La mayor consistencia taxonómica fue exhibida por el fenograma obtenido con todas las variables cualitativas y cuantitativas.The morphologic variability of the Colombian collection of lulo, Solanum quitoense Lam, related species of section Lasiocarpa and Solanaceae taxa of other sections, as outgroup, was studied. Ample qualitative and quantitative morphologic variability was found in the two botanical varieties of lulo and the other studied Lasiocarpa species. The 58 qualitative morphologic attributes were polymorphic in this set of taxa, with 73,9% of the total qualitative states included in the descriptor list up today, with 4,2 morphoalleles

  20. Culture collections.

    Science.gov (United States)

    Smith, David

    2012-01-01

    Culture collections no matter their size, form, or institutional objectives play a role in underpinning microbiology, supplying the resources for study, innovation, and discovery. Their basic roles include providing a mechanism for ex situ conservation of organisms; they are repositories for strains subject to publication, taking in safe, confidential, and patent deposits from researchers. They supply strains for use; therefore, the microorganisms provided must be authentic and preserved well, and any associated information must be valid and sufficient to facilitate the confirmation of their identity and to facilitate their use. The organisms must be collected in compliance with international conventions, international and national legislation and distributed to users indicating clearly the terms and conditions under which they are received and can be used. Collections are harmonizing approaches and characterizing strains to meet user needs. No one single collection can carry out this task alone, and therefore, it is important that output and strategy are coordinated to ensure culture collections deliver the basic resources and services microbiological innovation requires. This chapter describes the types of collection and how they can implement quality management systems and operate to deliver their basic functions. The links to information sources given not only provide support for the practitioners within collections but also provide guidance to users on accessing the huge resource available and how they can help ensure microbiology has the resources and a solid platform for future development. PMID:22569518

  1. Collective Location

    OpenAIRE

    Jayet, Hubert

    1997-01-01

    We analyse location of a group whose members differ in their preference ordering among sites while collective action calls for a common location. The possible locations are Pareto-efficient and individually rational outcomes of a cooperative game with strategic combinations defined by the members' locations. Only members located on the same site engage in collective action. The solutions' set of this game is determined and the example of a small firm whose members leave in different places il...

  2. Cerambycidae (Coleoptera coletados à luz a 45 metros de altura, no dossel da floresta amazônica, e a descrição de quatro espécies novas Cerambycidae (Coleoptera collected with light trap at 45 meters height over an Amazon forest canopy and the description of four new species

    Directory of Open Access Journals (Sweden)

    Ubirajara R. Martins

    2006-01-01

    Full Text Available É apresentada uma relação das 69 espécies de Cerambycidae coletados a 45 m numa torre metálica de 50 m que ultrapassa a maioria das copas das árvores, num platô de terra firme, na bacia do Rio Cueiras, Estação Experimental de Silvicultura Tropical, km 14 do núcleo ZF-2 em Manaus, Amazonas, Brasil. As coletas foram realizadas de janeiro a dezembro de 2004, durante três noites de transição lunar minguante/nova de cada mês, das 18 às 6 horas. Os insetos foram capturados em um lençol iluminado com lâmpada de 250 watts, luz mista de vapor de mecúrio e lâmpada de 20 watts BLB. Foram coletados Prioninae (12 espécies, Disteniinae (uma espécie, Cerambycinae (27 espécies e Lamiinae (29 espécies. Novas espécies descritas: Physopleurus rafaeli, sp. nov. (Prioninae, Macrotomini; Oncideres tuberosa sp. nov. (Lamiinae, Onciderini, Plistonax rafaeli sp. nov. (Lamiinae, Acanthoderini e Hemiloapis mena sp. nov. (Lamiinae, Hemilophini. São apresentadas notas em Oncideres phaetusa Dillon & Dillon, 1946, chave que modifica aquela para as espécies de Physopleurus Lacordaire, 1869 e chave para as espécies de Hemiloapis Galileo & Martins, 2004.A list of 69 species of Cerambycidae collected at 45 m height in a metallic tower of 50 m height, in a "platô de terra firme", in the Cueiras River basin, "Estação Experimental de Silvicultura Tropical, km 14 do núcleo ZF-2" in Manaus, Amazonas, Brazil. The collections were carried out monthly from January to December of 2004, during three nights of lunar transition third quarter monn/new moon from 18 p.m. to 6 a.m. The insects were collected over a vertical white sheet illuminated by a 250 watts mixed light and a 20 watts black-light (BLB lamps. Were collected Prioninae (12 species, Disteniidae (one species, Cerambycinae (27 species and Lamiinae (29 species. New species described: Physopleurus rafaeli, sp. nov. (Prioninae, Macrotomini; Oncideres tuberosa sp. nov. (Lamiinae, Onciderini

  3. Flebotomíneos (Diptera, Psychodidae) na Amazônia: II. Listagem das espécies coletadas na bacia petrolífera no Rio Urucu, Amazonas, Brasil, utilizando diferentes armadilhas e iscas Sandflies (Diptera, Psychodidae) in the Amazon: II. Cheek list of the species collected in the petroleum basin of the Urucu River, Amazonas, Brazil using differents traps and baits

    OpenAIRE

    Eloy G. Castellón; Fé, Nelson F; Paulo F. Buhrnheim; Flavio A. Fé

    2000-01-01

    A sandfly survey was carried out in 100 x 150 m patches of primary forest submitted to recent deforestation in order to determine its species composition 10-30 days after clearing. The following collecting methods were used: CDC traps whit black light; Malaise traps placed at 0.5, 1, 5 and 10m up from the the soil surface; Pennsylvania traps whit black light; Malaise traps, tree-base catches and human baits. A total of 2810 specimens of Lutzomyia França, 1924 and one species of Brumptomyia Fr...

  4. Locals Collection

    Directory of Open Access Journals (Sweden)

    Stephen Hastings-King

    2010-03-01

    Full Text Available A locals collection is a set of parameters that are used to delimit data-mining operations. This piece uses a collection of locals from around Essex Massachusetts to shape and delimit an interrogation of post-reality in contemporary America. It explores the notion of crisis, the possibility of a crisis of empire that may or may not emerge in a media-space that does not allow crisis of empire to be mentioned and relations this maybe-crisis to the various levels of economic dysfunction that have become evident since late 2008. But mostly this piece explores ways in which particular stories about particular people do and do not link/link to these larger-scale narratives. This is the first of a potential series of locals collections that will mine the American post-real.

  5. COLLECTION SCORING

    Directory of Open Access Journals (Sweden)

    Skiba S. A.

    2013-11-01

    Full Text Available One of the most popular methodologies of credit indebtedness management is used by banks, financial institutions and the collection agency has been considered in this article based on the experiment. This experiment demonstrates the methods of estimations of the client’s solvency and the way to impact to debitors. The article is accompanied with explanations and conclusion

  6. Collective Memory

    Czech Academy of Sciences Publication Activity Database

    Novotný, Lukáš

    2005-01-01

    Roč. 3, č. 1 (2005), s. 9. ISSN 1214-7567 R&D Projects: GA AV ČR(CZ) IBS7028301 Institutional research plan: CEZ:AV0Z70280505 Keywords : collective memory * cultural memory * communicative memory Subject RIV: AO - Sociology, Demography

  7. Collective Bargaining.

    Science.gov (United States)

    Goldschmidt, Steven M.

    This chapter deals with the legal process by which employers and employee organizations discuss matters related to employment. The chapter is organized to reflect the initial sequence of events in the collective bargaining process. Cases are reported and analyzed in nine sections: obligation and authority to bargain; unit determination and…

  8. Multi-species integrative biclustering

    OpenAIRE

    Waltman, Peter; Kacmarczyk, Thadeous; Bate, Ashley R.; Kearns, Daniel B.; Reiss, David J.; Eichenberger, Patrick; Bonneau, Richard

    2010-01-01

    We describe an algorithm, multi-species cMonkey, for the simultaneous biclustering of heterogeneous multiple-species data collections and apply the algorithm to a group of bacteria containing Bacillus subtilis, Bacillus anthracis, and Listeria monocytogenes. The algorithm reveals evolutionary insights into the surprisingly high degree of conservation of regulatory modules across these three species and allows data and insights from well-studied organisms to complement the analysis of related ...

  9. Preliminary separation and qualitative analysis of carotenoids in Arthrobacter sp.%一株节杆菌发酵产物中类胡萝卜素的分离及组分分析的初探

    Institute of Scientific and Technical Information of China (English)

    翟玉贵; 张伟国; 钱和

    2014-01-01

    [目的]对实验室保存的一株红色球菌进行菌株鉴定,并对色素提取液的组分进行定性分析.[方法]采取形态学观察、16S rDNA序列同源性分析和生理生化分析相结合的方法确定菌株的分类地位.使用乙醇-丙酮混合液提取胞内色素,采用硅胶G薄板层析法对色素提取液进行初步分离纯化,并结合其光谱吸收特性、质谱结果进行定性分析.[结果]实验结果表明此菌株属于节杆菌属(Arthrobacter sp.).薄板层析结果显示该菌株内主要有4种色素组分,且靠近溶剂前沿组分为黄色,其它组分皆为橘红色.吸收光谱特性、质谱结果显示黄色组分可能为β-胡萝卜素,橘红色组分可能为螺菌黄质系类胡萝卜素.[结论]此株节杆菌以较为廉价的糖蜜和玉米浆作为营养物质用于满足自身生长需要,并且积累胞内类胡萝卜素,因此该菌的进一步研究有一定的价值.

  10. Abundância e sazonalidade das espécies de Hydropsychidae (Insecta, Trichoptera capturadas em armadilha luminosa no Estado do Paraná, Brasil Abundance and seasonality of Hydropsychidae species (Insccta, Trichoptera collected with light trap at Paraná State, Brazil

    Directory of Open Access Journals (Sweden)

    Luciane Marinoni

    2000-03-01

    Full Text Available During one year of the project called "Survey of the Entomological Fauna in Paraná State" (henceforth PROFAUPAR, 126,340 adult specimens of Trichoptera were collected with light trap. The individuais of the family Hydropsychidae were identified and a list of species is presented. Eighteen species in four genera were identified. From this, S. (R. discalis Flint, 1972,5. (R. paramnsis Flint, 1983;S (R. spinulosa Flint, 1972 are for the first time registered for Brazil and Leptonema sparsum (Ulmer, 1905, Macrostemum hyalinum (Pictet, 1836, S. (Smicridea albosignata Ulmer, 1907; S. (Rhyacophylax dentifera Flint, 1983; S. (R. iguazu Flint, 1983; S. (R. piraya Flint, 1983; S. (R. unguiculaia Flint, 1983; S. (R. vermiculata Flint, 1978 and S. (R. weidneri Flint, 1972, for Paraná State. Discussion about the individuais abundance and species seasonality is presented.

  11. Collective Security

    DEFF Research Database (Denmark)

    Galster, Kjeld

    of one party, led to regarding the armed services as harmful to designs for developing civic society and a waste of resources generally. Moreover, they estimated that armed defence was a priori hopeless and possibly even dangerous as it might attract unnecessary attention by a would-be belligerent.......Collective Security: National Egotism (Abstract) In Danish pre-World War I defence debate the notion of collective security is missing. During the early years of the 19th century, the political work is influenced by a pervasive feeling of rising tension and danger on the continent of Europe...... and real defence of the country’s neutrality let alone a capability to support possible League of Nations action, should such need arise. The anti-militarist ideology of one party, led to regarding the armed services as harmful to designs for developing civic society and a waste of resources generally...

  12. Invasive species

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — This is a summary of management activities and research related to invasive species on Neal Smith National Wildlife Refuge between 1992 and 2009. As part of the...

  13. Eighteen new oleaginous yeast species.

    Science.gov (United States)

    Garay, Luis A; Sitepu, Irnayuli R; Cajka, Tomas; Chandra, Idelia; Shi, Sandy; Lin, Ting; German, J Bruce; Fiehn, Oliver; Boundy-Mills, Kyria L

    2016-07-01

    Of 1600 known species of yeasts, about 70 are known to be oleaginous, defined as being able to accumulate over 20 % intracellular lipids. These yeasts have value for fundamental and applied research. A survey of yeasts from the Phaff Yeast Culture Collection, University of California Davis was performed to identify additional oleaginous species within the Basidiomycota phylum. Fifty-nine strains belonging to 34 species were grown in lipid inducing media, and total cell mass, lipid yield and triacylglycerol profiles were determined. Thirty-two species accumulated at least 20 % lipid and 25 species accumulated over 40 % lipid by dry weight. Eighteen of these species were not previously reported to be oleaginous. Triacylglycerol profiles were suitable for biodiesel production. These results greatly expand the number of known oleaginous yeast species, and reveal the wealth of natural diversity of triacylglycerol profiles within wild-type oleaginous Basidiomycetes. PMID:27072563

  14. Evaluation of Caspofungin Susceptibility Testing by the New Vitek 2 AST-YS06 Yeast Card Using a Unique Collection of FKS Wild-Type and Hot Spot Mutant Isolates, Including the Five Most Common Candida Species

    DEFF Research Database (Denmark)

    Astvad, Karen M; Perlin, David S; Johansen, Helle K;

    2013-01-01

    susceptibility card to correctly identify the fks mutants from wt isolates and compared the performance to those of the CLSI and EUCAST reference methods. A collection of 98 Candida isolates, including 31 fks hot spot mutants, were included. Performance was evaluated using the FKS genotype as the "gold standard...

  15. The leaf surface strucure of the species from the subgenus Sedum of the genus Sedum L. (Crassulaceae DC. from the protected soil collections of A.V. Fomin Botanical Garden

    Directory of Open Access Journals (Sweden)

    Mykola V. Yatsenko

    2013-04-01

    Full Text Available By means of light and scanning electron microscopy (SEM the structure of leaf ’s epidermis of 8 species of genus SedumL. was investigated. A number of common (amphistomatics, anisocytic type of stomatal complex, strum cuticle and different signs have been revealed in the structure of the leaf ’s tissue. The results acquired on the basis of micromorphology of a leaf ’s epidermis can be used in the taxonomy of the investigated Sedumspecies.

  16. A new species of Brevipalpus Donnadieu (Acari: Tenuipalpidae) and key to the Egyptian species.

    Science.gov (United States)

    Halawa, Alaa M; Fawzy, Magdy M

    2014-01-01

    A new species, Brevipalpus noranae sp. nov. (Acari: Tenuipalpidae) is described and illustrated from females collected on Malus domestica Borkh and Citrus aurantium L. A key to the species of the genus Brevipalpus present in Egypt is provided. PMID:24869810

  17. Collective Motion

    CERN Document Server

    Czirok, A

    1999-01-01

    With the aim of understanding the emergence of collective motion from local interactions of organisms in a "noisy" environment, we study biologically inspired, inherently non-equilibrium models consisting of self-propelled particles. In these models particles interact with their neighbors by turning towards the local average direction of motion. In the limit of vanishing velocities this behavior results in a dynamics analogous to some Monte Carlo realization of equilibrium ferromagnets. However, numerical simulations indicate the existence of new types of phase transitions which are not present in the corresponding ferromagnets. In particular, here we demonstrate both numerically and analytically that even in certain one dimensional self-propelled particle systems an ordered phase exists for finite noise levels.

  18. Collective Success or Collective Failure?

    DEFF Research Database (Denmark)

    Fayyaz, Anjum

    , industrial cluster, and corporate social responsibility literatures with the aim of explaining why collective cluster action through industry associations and/or public private partnerships succeed or fail in facilitating cluster-wide compliance with CSR standards. I then use this framework to analyze a case......In this article, I make a contribution to the literature on how industrial clusters in developing countries respond to corporate responsibility demands from international buyers in Europe and North America. I outline an analytical framework that integrates insights from the global value chain...

  19. Duas espécies novas de Dendroblatta Rehn (Blattellidae coletados no Acre (Brasil em ninhos de vespas Two new species of Dendroblatta Rehn (Blattellidae collected from Acre (Brazil in wasps' nests

    Directory of Open Access Journals (Sweden)

    Sonia Maria Lopes

    2006-12-01

    Full Text Available D. falcifera sp. nov. e D. moratoi sp. nov. coletadas no interior de ninhos de vespas da família Sphecidae, servindo como presas para imaturos, são descritas do Estado do Acre, Brasil.D. falcifera sp. nov. and D. moratoi sp. nov., collected inside the wasps' nests of the family Sphecidae serving as preys for the immature forms, are described from the State of Acre, Brazil.

  20. Epidemiological Survey of Babesia Species in Japan Performed with Specimens from Ticks Collected from Dogs and Detection of New Babesia DNA Closely Related to Babesia odocoilei and Babesia divergens DNA

    OpenAIRE

    Inokuma, Hisashi; Yoshizaki, Yukako; Shimada, Yojiro; Sakata, Yoshimi; OKUDA, Masaru; Onishi, Takafumi

    2003-01-01

    Detection and analysis of Babesia species from ticks recovered from dogs in Japan were attempted by PCR and nucleotide sequence analysis based on the 18S rRNA gene, respectively. A total of 1,136 ticks were examined for Babesia DNA by 18S rRNA-based PCR and nucleotide sequencing. Partial sequences of Babesia canis vogeli DNA were detected from six ticks in Aomori, Nara, Hiroshima, Oita, and Okinawa Prefectures; and Babesia gibsoni Asia-1 DNA was also detected in four ticks in Osaka, Hiroshima...

  1. SPECIES IDENTIFICATION - DRY WEIGHT, SPECIES IDENTIFICATION - ORGANISM LENGTH, Condition factor, Carbon content of specimen and Nitrogen content of specimen site samples data collected in the South Atlantic Ocean and South Pacific Ocean on the LAURENCE M. GOULD cruises LMG0106 and LMG0205 as part of the Southern Ocean GLOBEC project from 2001-07-29 to 2002-09-09 (NODC Accession 0112563)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0112563 includes site samples and biological data collected aboard the LAURENCE M. GOULD during cruises LMG0106 and LMG0205 in the South Atlantic...

  2. PIGMENTS, SPECIES IDENTIFICATION - LIFE STAGE and SPECIES IDENTIFICATION - WET WEIGHT site samples data collected in the South Pacific Ocean on the LAURENCE M. GOULD cruises LMG0106 and LMG0205 as part of the Southern Ocean GLOBEC project from 2001-08-06 to 2002-09-09 (NODC Accession 0112635)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0112635 includes site samples and biological data collected aboard the LAURENCE M. GOULD during cruises LMG0106 and LMG0205 in the South Pacific...

  3. SPECIES IDENTIFICATION - ORGANISM LENGTH, growth rate and SPECIES IDENTIFICATION - LIFE STAGE site samples data collected in the South Atlantic Ocean and South Pacific Ocean on the LAURENCE M. GOULD cruises LMG0106 and LMG0205 as part of the Southern Ocean GLOBEC project from 2001-07-28 to 2002-09-05 (NODC Accession 0112634)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0112634 includes site samples and biological data collected aboard the LAURENCE M. GOULD during cruises LMG0106 and LMG0205 in the South Atlantic...

  4. ANIMALS - INDIVIDUAL - COUNTS, Displacement Volume, SPECIES IDENTIFICATION - LIFE STAGE, TAXONOMIC CODE and species abundance profile and discrete sample data collected in the South Atlantic Ocean and South Pacific Ocean on the NATHANIEL B. PALMER cruises NBP0103, NBP0104 and others as part of the Southern Ocean GLOBEC project from 2001-04-30 to 2002-09-11 (NODC Accession 0112171)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0112171 includes profile, discrete sample and biological data collected aboard the NATHANIEL B. PALMER during cruises NBP0103, NBP0104, NBP0202 and...

  5. SPECIES IDENTIFICATION - ORGANISM LENGTH, MARINE MAMMALS, SPECIES IDENTIFICATION, body fat and other marine mammal observation data collected in the South Atlantic Ocean and South Pacific Ocean on the LAURENCE M. GOULD cruises LMG0104, LMG0106 and others as part of the Southern Ocean GLOBEC project from 2001-05-05 to 2002-09-09 (NODC Accession 0112821)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0112821 includes marine mammal observation and biological data collected aboard the LAURENCE M. GOULD during cruises LMG0104, LMG0106, LMG0203 and...

  6. ANIMALS - INDIVIDUAL - COUNTS, Displacement Volume, SPECIES IDENTIFICATION - LIFE STAGE, TAXONOMIC CODE and species abundance profile and discrete sample data collected in the South Atlantic Ocean and South Pacific Ocean on the LAURENCE M. GOULD cruises LMG0104 and LMG0203 as part of the Southern Ocean GLOBEC project from 2001-05-01 to 2002-05-10 (NODC Accession 0112170)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0112170 includes profile, discrete sample and biological data collected aboard the LAURENCE M. GOULD during cruises LMG0104 and LMG0203 in the South...

  7. SPECIES IDENTIFICATION - ORGANISM LENGTH and SPECIES IDENTIFICATION fish examination data collected in the North Pacific Ocean on the CHARTER/FISHING BOATS cruises FR0206-01, FR0206-02 and others as part of the NEP project from 2000-05-29 to 2002-08-18 (NODC Accession 0113968)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0113968 includes biological and fish examination data collected aboard the CHARTER/FISHING BOATS during cruises FR0206-01, FR0206-02, FR0208, SE0005...

  8. SPECIES IDENTIFICATION, TAXONOMIC CODE and species abundance tows - plankton tows data collected in the North Atlantic Ocean on the ALBATROSS IV, ENDEAVOR and OCEANUS cruises AL9505, AL9506 and others as part of the GB project from 1995-02-11 to 1999-06-24 (NODC Accession 0105531)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0105531 includes tows - plankton tows and biological data collected aboard the ALBATROSS IV, ENDEAVOR and OCEANUS during cruises AL9505, AL9506,...

  9. SPECIES IDENTIFICATION - ORGANISM LENGTH, SPECIES IDENTIFICATION and TAXONOMIC CODE tows - plankton tows data collected in the North Atlantic Ocean on the ALBATROSS IV, ENDEAVOR and OCEANUS cruises AL9505, AL9506 and others as part of the GB project from 1995-02-11 to 1999-06-24 (NODC Accession 0105586)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0105586 includes tows - plankton tows and biological data collected aboard the ALBATROSS IV, ENDEAVOR and OCEANUS during cruises AL9505, AL9506,...

  10. Survey protocol for invasive species

    OpenAIRE

    Menza, Charles

    2009-01-01

    This protocol was developed by the Biogeography Branch of NOAA’s Center for Coastal Monitoring and Assessment to support invasive species research by the Papahānaumokuākea Marine National Monument. The protocol’s objective is to detect Carijoa riisei and Hypnea musciformis in deepwater habitats using visual surveys by technical divers. Note: This protocol is designed to detect the presence or absence of invasive species. A distinct protocol is required to collect information on abundance ...

  11. Nitrogen species

    Science.gov (United States)

    Harries, J. E.; Brasseur, G.; Coffey, M. T.; Fischer, H.; Gille, J.; Jones, R.; Louisnard, N.; McCormick, M. P.; Noxon, J.; Owens, A. J.

    Total odd nitrogen, NO(y), may be defined as the sum of all active nitrogen species that interchange photochemically with one another on a time scale of the order of weeks or less. As noted, NO + NO2 reactions dominate the processes controlling the ozone balance in the contemporary stratosphere. The observational data from non-satellite platforms are reviewed. The growth in available satellite data in the past four years is considered. Some of the most important scientific issues are discussed, taking into account new results from atmospheric models (mainly 2-D). The model results are compared with the observational data.

  12. ANIMALS - INDIVIDUAL - COUNTS, Displacement Volume, TAXONOMIC CODE, SPECIES IDENTIFICATION - SEX and species abundance tows data collected in the Gulf of Alaska and North Pacific Ocean on the CHARTER/FISHING BOATS cruises GP0401-01 and GP0401-02 as part of the NEP project from 2004-10-19 to 2004-11-08 (NODC Accession 0115259)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0115259 includes tows and biological data collected aboard the CHARTER/FISHING BOATS during cruises GP0401-01 and GP0401-02 in the Gulf of Alaska and...

  13. Aislamiento de especies termotolerantes de Campylobacter de aguas fluviales utilizando dos métodos de colecta Isolation of thermotolerant species of Campylobacter from river water using two collection methods

    Directory of Open Access Journals (Sweden)

    H. FERNANDEZ

    2003-01-01

    Full Text Available Campylobacter jejuni y C. coli son agentes zoonóticos de infecciones intestinales que pueden contaminar cuerpos de agua. Varios brotes de gastroenteritis por Campylobacter asociados al consumo de agua han sido descritos. En este estudio se compara el rendimiento de los métodos de la tórula de Moore (MSM y de filtración por membrana para el aislamiento de Campylobacter en 181 muestras de agua obtenidas del curso urbano del río Calle-Calle. En el 24.3% de las muestras obtenidas por MSM y en el 7.2% de las obtenidas por MFM fue posible aislar especies termotolerantes de Campylobacter, siendo C. coli aislado en mayor proporción que C. jejuni. Los resultados sugieren que MSM es un método eficiente para el aislamiento de estas bacterias a partir de aguaCampylobacter jejuni and C. coli are zoonotic agents of intestinal infection that could contaminate water bodies. Several outbreaks of Campylobacter gastroenteritis associated with the consumption of contaminated water have been reported. Various methods have been described to determine the presence of these bacteria in water bodies. In this study the performance of the Moore swab (MSM and the filtration through membrane methods (MFM for the isolation of Campylobacter from 181 water samples obtained from the urban course of the Calle-Calle river water samples was compared. Campylobacter species were isolated in 24.3% of the samples obtained with MSM and in 7.2% of those processed by MFM thus, appearing MSM as an efficient method to isolate Campylobacter from river water samples

  14. Hybrid seine for full fish community collections

    Science.gov (United States)

    McKenna, James E.; Waldt, Emily M.; Abbett, Ross; David, Anthony; Snyder, James

    2013-01-01

    Seines are simple and effective fish collection gears, but the net mesh size influences how well the catch represents the fish communities. We designed and tested a hybrid seine with a dual-mesh bag (1/4″ and 1/8″) and compared the fish assemblage collected by each mesh. The fine-mesh net retained three times as many fish and collected more species (as many as eight), including representatives of several rare species, than did the coarser mesh. The dual-mesh bag permitted us to compare both sizes and species retained by each layer and to develop species-specific abundance correction factors, which allowed comparison of catches with the coarse-mesh seine used for earlier collections. The results indicate that a hybrid seine with coarse-mesh wings and a fine-mesh bag would enhance future studies of fish communities, especially when small-bodied fishes or early life stages are the research focus.

  15. Deep-water Holothuroidea (Echinodermata collected during the TALUD cruises off the Pacific coast of Mexico, with the description of two new species Holothuroidea (Echinodermata de mar profundo recolectadas durante las campañas TALUD frente a la costa del Pacífico mexicano, con la descripción de dos especies nuevas

    Directory of Open Access Journals (Sweden)

    Claude Massin

    2011-06-01

    Full Text Available Research cruises aboard the R/V "El Puma" were organized to collect deep-water benthic and pelagic specimens off the Pacific coast of Mexico. Seventy four specimens of Holothuroidea were collected off the Pacific coast of Mexico in depths of 377-2 200 m. The collection includes representatives of 5 of the 6 orders of Holothuroidea, 3 Dendrochirotida, 2 Dactylochirotida, 2 Aspidochirotida, 4 Elasipodida and 2 Molpadiida. Apodida were not represented. Of the 13 species recognized, 11 were identified to species level and 2, belonging to the genera Ypsilocucumis Panning, 1949, and Mitsukuriella Heding and Panning, 1954, are new to science. Five species represent new geographic or depth records. A list of Mexican localities previously and newly reported for each species are plotted on distribution maps. Environmental data, i.e., depth, temperature, and dissolved oxygen measured at the bottom level during the survey are provided. When compared with other areas of the world, the reduced number of specimens collected during this survey could be linked to the limiting effect of the Pacific Mexico Oxygen Minimum Zone. An updated checklist of species of Holothuroidea recorded below 350 m depth along the Pacific coast of Mexico is also provided totaling 31 species: 13 of these occur in the California Current area, 20 in the Gulf of California, and 15 (16 along the SW coast of Mexico.Una serie de campañas oceanográficas fue organizada a bordo del B/O "El Puma", frente a las costas del Pacífico mexicano con el propósito de recolectar ejemplares de la fauna bentónica y pelágica de aguas profundas. La recolección incluyó representantes de 5 de los 6 órdenes de Holothuroidea, i.e., 3 Dendrochirotida, 2 Dactylochirotida, 2 Aspidochirotida, 4 Elasipodida y 2 Molpadiida. Los Apodida no están representados. De las 13 especies capturadas por debajo de los 350 m de profundidad (377-2 200 m, 11 fueron identificadas hasta especie y 2 pertenecientes a los g

  16. 76 FR 46837 - Endangered and Threatened Species Permit Applications

    Science.gov (United States)

    2011-08-03

    ... recovery purposes to collect voucher specimens and seeds from the following species within New Mexico... Fish and Wildlife Service Endangered and Threatened Species Permit Applications AGENCY: Fish and... with endangered species under the Endangered Species Act of 1973, as amended (Act). The Act...

  17. Species Conservation and Management: Case Studies

    Science.gov (United States)

    Akcakaya, H.R.; Burgman, M.A.; Kindvall, O.; Wood, C.C.; Sjogren-Gulve, P.; Hatfield, J.S.; McCarthy, M.A.

    2004-01-01

    This edited volume is a collection of population and metapopulation models for a wide variety of species, including plants, invertebrates, fishes, amphibians, reptiles, birds, and mammals. Each chapter of the book describes the application of RAMAS GIS 4.0 to one species, with the aim of demonstrating how various life history characteristics of the species are incorporated into the model, and how the results of the model has been or can be used in conservation and management of the species. The book comes with a CD that includes a demo version of the program, and the data files for each species.

  18. Anguilliform larvae collected off North Carolina

    Science.gov (United States)

    Ross, S.W.; Casazza, T.L.; Quattrini, A.M.; Sulak, K.J.

    2007-01-01

    The distinctive larval stage of eels (leptocephalus) facilitates dispersal through prolonged life in the open ocean. Leptocephali are abundant and diverse off North Carolina, yet data on distributions and biology are lacking. The water column (from surface to 1,293 m) was sampled in or near the Gulf Stream off Cape Hatteras, Cape Lookout, and Cape Fear, North Carolina during summer through fall of 1999-2005, and leptocephali were collected by neuston net, plankton net, Tucker trawl, and dip net. Additional samples were collected nearly monthly from a transect across southern Onslow Bay, North Carolina (from surface to 91 m) from April 2000 to December 2001 by bongo and neuston nets, Methot frame trawl, and Tucker trawl. Overall, 584 tows were completed, and 224 of these yielded larval eels. The 1,295 eel leptocephali collected (combining all methods and areas) represented at least 63 species (nine families). Thirteen species were not known previously from the area. Dominant families for all areas were Congridae (44% of individuals, 11 species), Ophichthidae (30% of individuals, 27 species), and Muraenidae (22% of individuals, ten species). Nine taxa accounted for 70% of the overall leptocephalus catches (in order of decreasing abundance): Paraconger caudilimbatus (Poey), Gymnothorax ocellatus Agassiz complex, Ariosoma balearicum (Delaroche), Ophichthus gomesii (Castelnau), Callechelys muraena Jordan and Evermann, Letharchus aliculatus McCosker, Rhynchoconger flavus (Goode and Bean), Ophichthus cruentifer (Goode and Bean), Rhynchoconger gracilior (Ginsburg). The top three species represented 52% of the total eel larvae collected. Most leptocephali were collected at night (79%) and at depths > 45 m. Eighty percent of the eels collected in discrete depth Tucker trawls at night ranged from mean depths of 59-353 m. A substantial number (38% of discrete depth sample total) of larval eels were also collected at the surface (neuston net) at night. Daytime leptocephalus

  19. Molecular Identification of Fusarium Species in Gibberella fujikuroi Species Complex from Rice, Sugarcane and Maize from Peninsular Malaysia

    OpenAIRE

    Heng Mei Hsuan; Latiffah Zakaria; Baharuddin Salleh

    2011-01-01

    The objective of this study was to identify Fusarium species in the Gibberella fujikuroi species complex from rice, sugarcane and maize as most of the Fusarium species in the species complex are found on the three crops. Isolates used were collected from the field and obtained from culture collection. The Fusarium isolates were initially sorted based on morphology and identifications confirmed based on the DNA sequence of the translation elongation factor 1-α (TEF-1α) gene. Based on the close...

  20. Espécies de flebotomíneos (Diptera, Psychodidae coletadas em ambiente urbano em municípios com transmissão de Leishmaniose Visceral do Estado de Mato Grosso do Sul, Brasil Species of phlebotomines (Diptera, Psychodidae collected in urban municipalities with transmission of visceral leishmaniasis in Mato Grosso do Sul State, Brazil

    Directory of Open Access Journals (Sweden)

    Paulo Silva de Almeida

    2010-06-01

    providing data for the leishmaniasis control programmes. The collections were undertaken with automatic light traps, installed monthly on three consecutive nights, from 06:00 pm to 6:00 am over a two-year period. A total of 34,799 sand fly specimens, belonging to 36 species, were collected. Lutzomyia longipalpis (Lutz & Neiva, 1912 and Nyssomyia whitmani (Antunes, 1939 were the most widely dispersed species, the former was found in 16 and the latter in 15 out of the 18 municipalities investigated, however, Lu. longipalpis was predominant in all the municipalities and Ny. whitmani was not predominant in any of them. Corumbá contributed with 40.92% of the specimens and Lutzomyia cruzi (Mangabeira, 1938 with 92.50% of the specimens captured there. It is suggested that the species of Lutzomyia genus and Ny. whitmani may be involved in the transmission of leishmaniasis in Mato Grosso do Sul state.

  1. Clinical hematology of rodent species.

    Science.gov (United States)

    Pilny, Anthony A

    2008-09-01

    Pet rodents, such as rats, guinea pigs, and chinchillas, differ from more traditional companion animal species in many aspects of their hematologic parameters. Animals within this order have much diversity in size, anatomy, methods of restraint, and blood collection technique. Appropriate sample collection is often the most challenging aspect of the diagnostic protocol, and inappropriate restraint may cause a stress response that interferes with blood test results. For many of these patients, sedation is required and can also affect results as well. In most cases, however, obtaining a standard database is necessary and very possible when providing medical care for this popular group of pets. PMID:18675732

  2. Thromboelastography in Selected Avian Species.

    Science.gov (United States)

    Strindberg, Sophie; Nielsen, Tenna W; Ribeiro, Ângela M; Wiinberg, Bo; Kristensen, Annemarie T; Bertelsen, Mads F

    2015-12-01

    Currently available assay methods and reagents are not optimized for evaluating avian hemostasis; therefore, assessing avian coagulopathies is challenging. Recently, thromboelastography (TEG), which measures the viscoelastic properties of blood, has been used clinically in mammalian species to diagnose and characterize hemostatic disorders. To evaluate TEG in healthy individuals of 6 avian species, we modified existing mammalian TEG protocols to allow analysis of citrated, avian whole-blood samples collected from scarlet ibis (Eudocimus ruber) (n = 13), American flamingos ( Phoenicopterus ruber ) (n = 13), helmeted Guinea fowl ( Numida meleagris ) (n = 12), Amazon parrots (Amazona species) (n = 9), Humboldt penguins ( Spheniscus humboldti ) (n = 6), and domestic chickens (n = 16). Activated partial thromboplastin time, prothrombin time, and fibrinogen were measured as a means of comparison. Regardless of the mode of activation, clot formation in the species studied was markedly delayed compared with mammals. Because of prolonged reaction time (14.7-52.7 minutes) with kaolin and diluted tissue factor, undiluted human tissue factor was used in all avian samples because it provided the shortest reaction time. Species differed significantly in reaction time (P = .007), clotting rate (P < .001), rate of clot formation (α angle; P < .001), and maximum amplitude (P < .001) values, indicating that species-specific reference intervals are necessary. Based on these results, TEG with specific reference intervals could prove useful in evaluating avian hemostatic disorders. PMID:26771317

  3. New species of Eibesfeldtphora Disney (Diptera: Phoridae) and a new key to the genus.

    Science.gov (United States)

    Uribe, Soraya; Brown, Brian V; Bragança, Marcos A L; Queiroz, Jarbas M; Nogueira, Carlos A

    2014-01-01

    Two new species of parasitoids, Eibesfeldtphora trifurcata and Eibesfeldtphora inornata, are described. Both species were collected in Brazil. A new key is provided and illustrated for the twenty one known species. PMID:24943441

  4. Sarcophyton andamanensis, a new species of soft coral from Andaman Islands

    Digital Repository Service at National Institute of Oceanography (India)

    Jayasree, V.; Bhat, K.L.; Parulekar, A.H.

    A systematic and morphological description of a new species of soft coral, Sorcophyton andamanensis collected from Andaman Islands is given. A comparative study made between the new species of sarcophyton and other related species along with its...

  5. Study of the inorganic constituents in different species of Casearia medicinal plant collected in distinct regions of the Atlantic Forest, SP State, Brazil; Estudo sobre os constituintes inorganicos presentes em diferentes especies da planta medicinal do genero Casearia coletadas em regioes distintas da Mata Atlantica, SP

    Energy Technology Data Exchange (ETDEWEB)

    Yamashita, Celina Izumi

    2006-07-01

    The use of medicinal plants in the treatment of diseases has increased significantly in the last years, as has research concerning chemical characterization of these plants. In this study, inorganic constituents were determined in leaves and in extracts from three medicinal plant species of the Casearia genus (C. sylvestris, C. decandra and C. obliqua) collected in distinct regions of the Atlantic Forest, SP. The elemental compositions of the soils in which these plants were grown were also determined. Traditionally, these plants are used due to their antiinflammatory, antiacid, antiseptic and cicatrizing properties. The antiulcer and the antitumor activities of the Casearia genus and its capacity to neutralize snake and bee venoms, have also been scientifically confirmed. The analytical methodology used was neutron activation analysis. Long and short irradiation periods of the samples and the standards were carried out at IPEN's IEA-R1 nuclear research reactor. In the leaf K was found at the percentage levels, Ca, Cl, Mg and Na at mg g{sup -1} levels and the elements Br, Fe, Mn, Rb and Zn at the {mu}g g{sup -1} levels. As, Co, Cr, Cs, La, Sb, Sc and Se at the ng g{sup -1} levels. Results obtained in the extracts indicated that the same elements present in the leaves are also found in their extracts. The comparison between the inorganic composition of Casearia sylvestris leaves collected from three different regions of the Atlantic Forest showed that the elemental concentrations in the plants leaves varied depending on the place where they were grown. Different Casearia species cultivated in a same region presented similar elemental compositions. Based on these findings it can be concluded that the studies about the pharmacological effect of Casearia genus plants grown in different types of soil are of great importance. The quality of the obtained results was assured by the analyses of the certified reference materials NIST 1573a Tomato Leaves, NIST 1515 Apple

  6. Protecting Endangered Species in the United States

    Science.gov (United States)

    Shogren, Jason F.; Tschirhart, John

    2001-05-01

    Protecting Endangered Species in the United States is a collection of original papers by economists, biologists and political scientists with a common theme--protecting species at risk while safeguarding social order is a policy challenge that entangles biology, politics, and economics. The volume begins by assessing the biological needs that define the endangered species problem. The authors then explore the political realities that delimit the debate--who pays the costs and receives the benefits, and how interest groups affect species protection. The book addresses the economic choices that must be confronted for effective protection strategies including incentive schemes to promote preservation on public and private land.

  7. The Effects of Heterologous Expression of groEL from Arthrobacter simplex on the Resistance Performance of Escherichia coli%简单节杆菌groEL基因表达对大肠杆菌抗逆性能的影响

    Institute of Scientific and Technical Information of China (English)

    王艳霞; 王红玲; 王敏; 骆健美

    2016-01-01

    Arthrobacter simplex,a strain with steroid C1,2 dehydrogenation ability,has been widely used in the steroid industry, usually adding ethanol in the transforming system may catalyze the dissolution of hydrophobic substrates. Our prior work by LC-MS/MS and bioinformatics analysis found that heat shock protein(HSP)GroEL was closely correlated to the cell adaptive behavior under ethanol stress condition. Based on this concept,groEL gene was cloned by PCR while usingA. simplexTCCC 11037 genome as a template. The results showed that the homologies of nucleotide and amino acid sequence of GroEL in the strain were the highest with that fromNocardioides sp. JS614 by the ratio of 89% and 95%,respectively. Then its heterologous expression was conducted in Escherichia coli BL21(DE3)with the vector pET-22b (+),and the results showed that the recombinant strain presented the significant increase on the survival performance under the shock condition with high-concentration of methanol,hypertonicity and superacid,as well as the growth performance under the proper stresses of them. The study was the first report on the cloning and expression of genegroEL fromA. simplex,and also provided fundamental data for exploring the biological function of HSP protein GroEL from A. simplex.%以简单节杆菌(Arthrobacter simplex)TCCC 11037基因组为模板,通过PCR方法进行groEL基因克隆,结果表明,该菌株中GroEL的核苷酸和氨基酸序列与Nocardioidessp. JS614来源的GroEL同源性最高,分别为89%和95%。通过pET-22b(+)将其在大肠杆菌BL21(DE3)中进行异源表达,结果表明,重组菌株在甲醇、高渗和强酸这3种压力高浓度冲击条件下的存活能力和适当压力条件下的生长性能均明显提高。

  8. Electronic collection management

    CERN Document Server

    Mcginnis, Suzan D

    2013-01-01

    Build and manage your collection of digital resources with these successful strategies! This comprehensive volume is a practical guide to the art and science of acquiring and organizing electronic resources. The collections discussed here range in size from small college libraries to large research libraries, but all are facing similar problems: shrinking budgets, increasing demands, and rapidly shifting formats. Electronic Collection Management offers new ideas for coping with these issues. Bringing together diverse aspects of collection development, Electronic Collection

  9. The Peritelini (Coleoptera: Curculionidae, Entiminae of the Vitale collection

    Directory of Open Access Journals (Sweden)

    Cosimo Baviera

    2016-01-01

    Full Text Available The collection of Peritelini (Coleoptera Curculionidae Entiminae currently stored in the Vitale collection of Messina University is an element of great importance for studies of taxonomy and biogeography of these rarely collected weevils. All species are commented in relation to the contributions to this taxonomic group, published on several occasions by the authors.

  10. Alien species on the coasts of Turkey

    Directory of Open Access Journals (Sweden)

    M.E. CINAR

    2012-12-01

    Full Text Available The compilation of data on alien species reported from the Turkish coasts yielded a total of 263 species belonging to 11 systematic groups, of which Mollusca had the highest number of species (85 species, followed by Crustacea (51, fishes (43 and phytobenthos (39. The Black Sea is represented by a total of 20 alien species, the Sea of Marmara by 48 species, the Aegean Sea by 98 species and the Levantine Sea by 202 species. The majority of aliens found in the Black Sea and the Sea of Marmara were transported via shipping, whereas the Levantine coast is extensively subjected to Lessepsian migration. Benthic habitats (soft and hard substrata comprise 76% of the total alien species and the pelagic environment is inhabited by thirty-nine species. Almost 50% of aliens collected from the Turkish coasts were found only at 0-10 m depth. Eight species occur at depths deeper than 100 m. The impacts of aliens on the benthic and pelagic ecosystems are presented.

  11. Coryneform bacteria in human semen: inter-assay variability in species composition detection and biofilm production ability

    Directory of Open Access Journals (Sweden)

    Silver Türk

    2014-02-01

    Full Text Available Background: Coryneform bacteria constitute an important segment of male urogenital microbiota. They have been generally considered as saprophytes, although some species have been associated with prostatitis as well. At the same time, biofilm infections have been suspected as a cause of prostatitis. Objective: To identify a set of coryneform bacteria isolated from semen of either healthy men or prostatitis patients applying different methods to reveal inter-assay variability and to determine their ability of adhesion and biofilm production. Design: Coryneform bacteria were identified by API Coryne 2.0 biochemical identification system and 16S rDNA sequencing using different primer sets. Quantitative assessment of biofilm production was performed using crystal violet binding assay method. Results: The most common species were Corynebacterium seminale, C. minutissimum, and Dermabacter hominis. Altogether 14 species and related genera were found. We observed the best inter-assay agreement when identifying C. seminale. Biofilm was observed in 7 out of 24 strains. The biofilm-producing strains belonged to Arthrobacter cumminsii, Dermabacter hominis, C. minutissimum, and Actinomyces neuii. No differences were found between the strains originating from prostatitis patients and healthy men. Dermabacter hominis strains were more potent biofilm producers than C. seminale strains (p=0.048. Conclusions: We can conclude that a wide variety of coryneform bacteria can be found from the male genital tract, although their exact identification is problematic due to insufficient representation in databases. Nearly one third of the strains are able to form biofilm that may give them an advantage for surviving several host- and treatment-related conditions.

  12. Towards modern petrological collections

    NARCIS (Netherlands)

    Kriegsman, L.M.

    2004-01-01

    Petrological collections result from sampling for academic research, for aesthetic or commercial reasons, and to document natural diversity. Selection criteria for reducing and enhancing collections include adequate documentation, potential for future use, information density, time and money investe

  13. Species selection on variability.

    OpenAIRE

    Lloyd, E. A.; Gould, S J

    1993-01-01

    Most analyses of species selection require emergent, as opposed to aggregate, characters at the species level. This "emergent character" approach tends to focus on the search for adaptations at the species level. Such an approach seems to banish the most potent evolutionary property of populations--variability itself--from arguments about species selection (for variation is an aggregate character). We wish, instead, to extend the legitimate domain of species selection to aggregate characters....

  14. The Undergraduate Library Collection.

    Science.gov (United States)

    Stewart, Rolland C.

    The development of undergraduate library collections is shown under two aspects: (1) the formation of the basic collection of the Undergraduate Library of the University of Michigan, and (2) the problems, practical and theoretial, encountered in the day-to-day effort to maintain the collection. The budget is the sire of all selection criteria.…

  15. Determination of Tannins of Three Common Acacia Species of Sudan

    OpenAIRE

    Isam Eldin Hussein Elgailani; Christina Yacoub Ishak

    2014-01-01

    The objective of this study is to analyze and compare tannins of three common Acacia species of Sudan, since vegetable tannins are important in leather industry. Acacia nilotica and Acacia seyal samples were collected from Sunt Forest in Khartoum State, while Acacia senegal samples were collected from the Debabat Forest in South Kordofan State. Bark samples from bulk collections of the three Acacia species were extracted with boiled deionized water. The amount of tannins present in these bulk...

  16. Metals in Mediterranean aquatic species

    International Nuclear Information System (INIS)

    Highlights: • Study on metals in Mediterranean fish and fishery products. • Data collected for several contaminants in wild and farmed species of commercial interest. • Samples compliance with EU regulatory limits. • Identification of Mediterranean Sea areas showing background concentrations. • An interpretation of the chemical pollution issue of Marine Framework Strategy Directive. - Abstract: Metals such as arsenic (As), cadmium (Cd), copper (Cu), chromium (Cr), nickel (Ni), lead (Pb), vanadium (V), have been determined in species of Mediterranean marine organisms collected from areas supposed to be at background contamination levels. The Inductively Coupled Plasma Mass Spectrometry (ICP-MS) approach was adopted for the determination of all the metals. Arsenic, Cd and Pb determined in the 42 samples, do not exceed the pertinent maximum level except a sample of hake. In wild fish, the concentration range for Cr, Ni, V and Cu was, respectively: 0.07–0.09, 87.6–124, 0.022–0.075 and 0.79–1.74 μg/g fresh weight (fw). The farmed fish samples show concentration levels below the wild fish ones, except for Cr which range at the same levels. Cadmium and Pb show a high sample number under the quantification limit. The elements do not bio-magnify among the species considered and appear to show low variations in relation to organisms’ position in the food chain and at sampling sites

  17. Species Diversity of Hypogeous Ascomycetes in Israel

    OpenAIRE

    Barseghyan, Gayane S.; Wasser, Solomon P

    2010-01-01

    We conducted a species diversity study of the hypogeous Ascomycetes of Israel. The hypogeous Ascomycetes in Israel include members of the families Pyronemataceae, Pezizaceae, and Tuberaceae, which are represented by seven species: Hydnocystis piligera, Terfezia arenaria, T. claveryi, T. oligosperma, Tirmania africana, Tuber asa, and T. nitidum; only T. asa is new to Israeli mycobiota. Synonymy, locations, collection data, general distribution, distribution in Israel, descriptions, a key to id...

  18. Virulence of Fusarium species to alfalfa seedlings

    OpenAIRE

    Krnjaja Vesna; Lević Jelena; Ivanović M.; Tomić Zorica P.

    2005-01-01

    In in vitro conditions, virulence of 91 isolates of species Fusarium genus (F. oxysporum, F. solani, F. acuminatum, F. equiseti, F. arthrosporioides, F. prolifera- tum, F. avenaceum, F. semitectum, F. tricinctum, F. sporotrichioides and F. graminearum) towards alfalfa seedlings was investigated. Isolates of investigated species originated from diseased alfalfa plants collected at four locations in Serbia based on symptoms of wilting caused by Fusarium and root rotting. Pathogenicity and virul...

  19. Virulence of Fusarium species to alfalfa seedlings

    OpenAIRE

    Krnjaja Vesna; Lević Jelena T.; Ivanović Mirko; Tomić Zorica P.

    2005-01-01

    In in vitro conditions, virulence of 91 isolates of species Fusarium genus (F. oxysporum, F. solani, F. acuminatum, F. equiseti, F. arthrosporioides, F. proliferatum, F. avenaceum, F. semitectum, F. tricinctum, F. sporotrichioides and F. graminearum) towards alfalfa seedlings was investigated. Isolates of investigated species originated from diseased alfalfa plants collected on four locations in Serbia based on symptoms of wilting caused by fusarium and root rotting. Pathogenicity and virulen...

  20. Herbarium of the University of Malaga (Spain): Vascular Plants Collection

    OpenAIRE

    Jose García Sánchez; Baltasar Cabezudo

    2013-01-01

    The herbarium of University of Málaga (MGC Herbarium) is formed by four biological collections. The vascular plants collection (MGC-Cormof) is the main collection of the herbarium. MGC-Cormof dataset aims to digitize and publish data associated with over 76.000 specimens deposited in the collection, of which 97.2% of the specimens are identified at species level. Since 2011, the University of Malaga’s Central Research Service (SCAI) has been responsible for maintaining the herbar...

  1. Review: Ecological distribution of Dipterocarpaceae species in Indonesia

    Directory of Open Access Journals (Sweden)

    PURWANINGSIH

    2004-07-01

    Full Text Available Dipterocarpaceae is one of the biggest family with >500 species in the world, and most of dipterocarps population are grown in Indonesia which have high economical value of wood. One of the most important value from dipterocarps species is high on endemicities; there are up to 128 species (53.78% from 238 dipterocarps species in Indonesia. Distribution of dipterocarps species would be affected by some factors especially edaphic, climate, and altitude. In Indonesia the dipterocarps species distribution could be shown from islands groups, number of species and forest types. Based on the observation of herbarium collection in Herbarium Bogoriense the distribution of the most dipterocarps species was in the altitude of 0-500 m and 500-1000 m on the dipterocarps forest type. Kalimantan and Sumatra were the two bigger islands with have the dipterocarps species distributed relatively high on population and species.

  2. Morphological Characterisation of Some Important Indian Garcinia Species

    OpenAIRE

    Utpala Parthasarathy; Nandakishore, O. P.

    2014-01-01

    The genus Garcinia has over 200 species distributed in the tropics of the world. About 35 species occur in India, many of which are endemic and economically important with immense medicinal properties. However, lack of awareness, coupled with habitat destruction, leads to genetic erosion of this forest resource and many species are threatened. The Indian Institute of Spices Research (IISR), Calicut, has Garcinia genetic resources’ collection of 15 species of Western Ghats and Eastern Himalaya...

  3. Introduction of some Odonata species (Insecta) from northern Iran

    OpenAIRE

    Elham Elham Yoosefi Lafooraki; Fatemeh Rasekhi; Masoumeh Shayanmehr

    2014-01-01

    Odonata are an order belonging to Paleoptera which are divided into three suborders, Anisoptera, Anisozygoptera and Zygoptera. In order to investigate Odonata fauna from Mazandaran province, adult insects were collected from several different natural habitats and were identified. The specimens were included 13 species from 10 genera belonging to seven families. Seven species belonged to Anisoptera and six species belonged to Zygoptera. The species that were marked by asterisk were recorded fo...

  4. Endangered Species Act

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The purpose of the Endangered Species Act (ESA) is to protect and recover imperiled species and the ecosystems upon which they depend. The U.S. Fish and Wildlife...

  5. A Theory of Flagship Species Action

    Directory of Open Access Journals (Sweden)

    Paul Jepson

    2015-01-01

    Full Text Available The flagship species approach is an enduring strategy in conservation. Academic discussion on flagship species has focussed on two dimensions: on what basis should they be selected and how have they been put to use. Here we consider a third dimension, namely the manner in which flagship species act and have the capacity to galvanise and influence conservation outcomes. Drawing on concepts from the social sciences, viz. affordance, framing, and actor-networks; we discuss examples of flagship species to propose a theory of flagship species action. In brief, our theory posits that a flagship species is one with traits that afford the assembly of relatively coherent networks of associations with ideational elements located in pre-existing cultural framings. These associations give rise to opportunities to align with deep cultural frames, contemporary cultural phenomena and political economy such that when a conservation action is introduced, forms of agency cause the species and human publics to change. The species becomes re-framed (or reinvigorated as a cultural asset speaking for a wider nature, publics and political agendas. Further our theory posits that species with traits that enrol in idea networks incorporating human fears, will have limited flagship capacity. This is because the ability of the representations produced to align with frames incorporating collective aspirations is constrained. In terms of applied conservation practice, our theory suggests that: a key criteria for selecting potential flagship species is presence in existing cultural frames, that effective deployment of flagship species requires an understanding of the species′ cultural associations, and a species ability to galvanise action may be limited to certain times and places. Furthermore, once deployed conservation interests will never have full control over the flagship species: it may act in uncertain and unexpected ways.

  6. The Earth's Vanishing Species.

    Science.gov (United States)

    USA Today, 1981

    1981-01-01

    Elaborates on the problem of expanding human activity to the world's plant and animal species. Concludes that preserving an individual species is largely a waste of time and effort and that the best way to protect the most species of plants and animals is to save their environments over large tracts of land. (DB)

  7. Species diversity modulates predation

    NARCIS (Netherlands)

    Kratina, P.; Vos, M.; Anholt, B.R.

    2007-01-01

    Predation occurs in a context defined by both prey and non-prey species. At present it is largely unknown how species diversity in general, and species that are not included in a predator's diet in particular, modify predator–prey interactions.Therefore we studied how both the density and diversity

  8. Aquatic invasive species

    Science.gov (United States)

    Thorsteinson, Lyman

    2005-01-01

    Invasive species are plants or animals that are present in an ecosystem beyond their native range. They may have few natural controls in their new environment and proliferate. They can threaten native species and interfere with human activities. The Western Fisheries Research Center (WFRC) has been conducting research to understand how non-native species invade and affect ecosystems, thus aiding management efforts.

  9. Conservation status of Chinese species: (2) Invertebrates.

    Science.gov (United States)

    Xie, Yan; Wang, Sung

    2007-06-01

    A total of 2441 invertebrate species were evaluated using the IUCN Red List Criteria and Regional Guidelines. Approximately 30 experts were involved in this project, which covered a wide range of species, including jellyfish, corals, planarians, snails, mollusks, bivalves, decapods, benthic crustaceans, arachnids (spiders, scorpions), butterflies, moths, beetles, sea cucumbers, sea urchins, sea stars, acorn worms and lancelets. In general, invertebrate species in China were found to be severely threatened, with 0.9% being critically endangered, 13.44% endangered and 20.63% vulnerable. All species of hermatypic corals and planarians are threatened. More than 80% of evaluated species face serious threat due to habitat destruction by coral collection, logging, non-woody vegetation collection, timber plantations, non-timber plantations, extraction and/or livestock. Other threats are intrinsic factors, harvesting by humans, alien invasive species and pollution. The main intrinsic factors contributing to the high levels of threat are limited dispersal and restricted range. No conservation measures have been taken for 70% of the threatened invertebrates evaluated. Existing conservation measures include: strengthening of national and international legislation (Convention on International Trade in Endangered Species of Wild Fauna and Flora), increasing public awareness, studying population trends/monitoring, and establishment of protected areas. The major conservation measure employed is strengthening of policies. Relative to the situation worldwide (2006 IUCN Red List), there is little information available about invertebrate extinctions in China. PMID:21396022

  10. Quantifying the taxonomic diversity in real species communities

    CERN Document Server

    Cartozo, C Caretta; Ricotta, C; Barthelemy, M; Caldarelli, G

    2008-01-01

    We analyze several florae (collections of plant species populating specific areas) in different geographic and climatic regions. For every list of species we produce a taxonomic classification tree and we consider its statistical properties. We find that regardless of the geographical location, the climate and the environment all species collections have universal statistical properties that we show to be also robust in time. We then compare observed data sets with simulated communities obtained by randomly sampling a large pool of species from all over the world. We find differences in the behavior of the statistical properties of the corresponding taxonomic trees. Our results suggest that it is possible to distinguish quantitatively real species assemblages from random collections and thus demonstrate the existence of correlations between species.

  11. Collecting Taxes Database

    Data.gov (United States)

    US Agency for International Development — The Collecting Taxes Database contains performance and structural indicators about national tax systems. The database contains quantitative revenue performance...

  12. Mosquito species geographical distribution in Iraq 2009

    Directory of Open Access Journals (Sweden)

    Haidar A. Hantosh, Hameeda M. Hassan, Bushra Ahma & Ali Al-fatlawy

    2012-03-01

    Full Text Available Background & objectives: Mosquitoes transmit diseases to >700 million people annually. Malaria kills threemillion persons every year, including one child every 30 sec. Worldwide there are >3000 mosquito species.In Iraq, 37 species have been identified in different surveys over several decades. We conducted an entomologicalsurvey to determine the mosquito species and their distribution in Iraq in 2009.Methods: Between January 20 and December 31, 2009, mosquitoes in houses in 12 Iraqi provinces werecollected and speciated. Five to 10 villages were selected randomly in each province and in each village 10houses were selected randomly to collect mosquitoes and the density of mosquitoes per room was calculated.Kits for entomological investigation were used and the collected mosquitoes were sent to the vector bornedisease section laboratory for classification using the Naval Medical Research Unit 3 standard classificationkey.Results: A total of 29,156 mosquitoes were collected, representing two genera: Anopheles (n=13,268, or 46%of the total collected and Culex (n=15,888, or 54% of the total collected. Four Anopheles (An. pulcherrimus,An. stephensi, An. superpictus, and An. sacharovi and one Culex (Cx. pipiens species were identified. Anophelespulcherrimus was found in 11 provinces, An. stephensi in 7, An. superpictus in 2 and An. sacharovi in oneprovince, while Cx. pipiens was found in all the 12 provinces. Two peaks of mosquito density were found: thefirst from April–June and the other from September–October.Interpretation & conclusion: There are clear differences in Anopheles mosquito species geographical distributionand density among Iraqi provinces, while Cx. pipiens mosquitoes are distributed all over Iraq. All mosquitogenera show clear seasonal density variation. The study highlights that the manual mosquito classification isnot enough to identify all the species of mosquitoes in Iraq

  13. INVENTORY OF THE INVASIVE ALIE N PLANT SPECIES IN INDONESIA

    Directory of Open Access Journals (Sweden)

    SRI S UDARMIYATI T JITROSOEDIRDJO

    2005-01-01

    Full Text Available An inventory of the alien plant species in Indone sia based on the existing references and herbarium specimens concluded that 1936 alien plant species ar e found in Indonesia which belong to 187 families. Field studies should be done to get the complete figur es of alien plant species in Indonesia. Based on the existing figures of the plant species, the invasive alien plant species can be iden tified, followed by studies on the assessment of losses, biology, management and their possible utilizations. Alien plant species are imported to Indonesia for cultivation, collection of the botanical garden, as experimental plants or other curiosities. Aside from plants purposely imported, there are also introduced plant propagules conta-minating imported agricultural products. These alien plant species can be beneficial or have a potential of being invasive. The alien cultivated species consisted of 67% of the total number. More than half of the cultivated plants are ornamental plants. Some of th e species are naturalized or escaped from cultivation and become wild and invasive. Some other natura lized species, adapted well without any problems of invasion. There are 339 species or 17% of the species r ecorded as weeds. The highest record of weeds is found in the family of Poaceae (57 species, follo wed by Asteraceae (53 species and Cyperaceae (35 species. There are 6 families having more than 10 species of weeds: Amaranthaceae, Asteraceae, Cyperaceae, Euphorbiaceae, Poaceae, and Rubiaceae. Three families have more than 100 species: Asteraceae 162 species, Poaceae 120 species, and Papillionaceae 103 species. Five species of aquatic and 20 species of terrestrial plants considered as important alien plant species in Indonesia were identified and some of their distributions noted

  14. Preparing collections for digitization

    CERN Document Server

    Bulow, Anna E

    2010-01-01

    Most libraries, archives and museums are confronting the challenges of providing digital access to their collections. This guide offers guidance covering the end-to-end process of digitizing collections, from selecting records for digitization to choosing suppliers and equipment and dealing with documents that present individual problems.

  15. COLLECTIVE-FIELD ACCELERATION

    Energy Technology Data Exchange (ETDEWEB)

    Sessler, Andrew M.

    1969-07-04

    Diverse methods proposed for the acceleration of particles by means of collective fields are reviewed. A survey is made of the various currently active experimental programs devoted to investigating collective acceleration, and the present status of the research is briefly noted.

  16. ARS Culture Collection

    Science.gov (United States)

    The internationally recognized Agricultural Research Service (ARS) Culture Collection will be described to include the microorganisms maintained by the collection, preservation methods and worldwide distribution of cultures. The impact of the germplasm will be described to include discovery of the f...

  17. Digital Audio Collections

    Directory of Open Access Journals (Sweden)

    Jason Tenter

    2010-11-01

    Full Text Available

    This paper is about the possibility of libraries creating digital music or audio collections based on the current state of the digital music industry, and in comparison with the difficulties librarians have found in adding e-books to collections. In comparing the e-book and digital music markets, factors such as digital rights management (DRM and the differences in both markets’ relationships with customers are examined. This juxtaposition suggests that where e-books have been difficult to include in library collections because publishers want to maintain control over their content, music publishers have had to resign some of the control over their products because of file-sharing, and so may work with libraries to develop these collections in a more constructive way than e-book venders. At the end of the paper, some models are suggested for developing these collections.

  18. Debt collection project report

    Energy Technology Data Exchange (ETDEWEB)

    1980-05-01

    In October 1979 the Office of Management and Budget initiated a review of debt collection within the Federal Government. A DOE Debt Collection Project Team was established, and seven activites were selected for review. These were Albuquerque Operations Office; Bonneville Power Administration; Chicago Operations and Regional Office; Naval Petroleum Reserves, California; Oak Ridge Operations Office; Washington Financial Services Division; and Western Area Power Administration. The team visited each of these activities to collect data on the size, age, and types of receivables managed and procedures for billing, aging, and handling overdue accounts. Various deficiencies were found to exist at several of the DOE entities that are not consistent with good management practices in the performance of their debt collection functions. Also, the Debt Collection Project Team identified a wide variation in the procedures followed by DOE activities in the management of accounts receivable, and a wide variation in the effectiveness of the debt management functions. 1 figure, 17 tables. (RWR)

  19. Viabilidade, confirmação taxonômica e detecção enzimática de espécies de Acremonium preservadas sob óleo mineral na Coleção de Culturas University Recife Mycology Viability, taxonomic confirmation and enzymatic detection of Acremonium species preserved under mineral oil in the URM Culture Collection

    Directory of Open Access Journals (Sweden)

    Suellen Carvalho de Moura Braz

    2009-02-01

    Full Text Available Enzimas hidrolíticas secretadas por fungos têm um papel importante na patogenicidade das infecções. Objetivando avaliar a atividade enzimática foram testados 31 isolados de Acremonium mantidos na Coleção de Culturas University Recife Mycology. Fragmentos das culturas foram transferidos para caldo glicosado para reativação e posterior crescimento em meio ágar batata dextrose, para verificar viabilidade, pureza e confirmação taxonômica pela observação das características macroscópicas e microscópicas. Para detecção enzimática foram utilizados substratos de caseína do leite e gelatina para protease, amido para amilase e lecitina de soja para fosfolipase. Das 31 culturas, 26 (83,9% mantiveram-se viáveis e 24 (92,3% foram confirmadas taxonomicamente. Das 24 culturas, 12 (50% apresentaram atividade proteásica, duas (16,7% em caseína do leite, uma (8,3% em gelatina e nove (75% em ambos os substratos; 16 (66,7% degradaram amido. Nenhuma cultura apresentou atividade fosfolipásica. Conclui-se que espécies de Acremonium são capazes de produzir enzimas envolvidas na patogenicidade das infecções fúngicas.Hydrolytic enzymes secreted by fungi play an important role in the pathogenesis of infection. With the aim of evaluating the enzymatic activity, 31 isolates of Acremonium stored in the University of Recife Mycology (URM Culture Collection were tested. Culture fragments were transferred to glycoside broth for reactivation and further growth in potato dextrose agar medium in order to investigate viability and purity and to confirm the taxonomy through observing the macroscopic and microscopic characteristics. To detect enzymes, milk casein and gelatin were used as substrates for proteinase, starch for amylase and soy lecithin for phospholipase. Among the 31 cultures, 26 (83.9% remained viable and 24 (92.3% were confirmed taxonomically. Out of these 24 cultures, 12 (50% presented proteinase activity, of which two (16.7% were on

  20. Collective dynamics at RHIC

    International Nuclear Information System (INIS)

    The strong collective flow effects, 2> and t>, observed at RHIC (√SNN = 130 GeV) is discussed. It is shown that part of the collectivity could have already developed at partonic stage. To 'see' the partonic effects directly, measurements of multi-strange baryons like Ξ, Ω and charmed particles like J/ψ transverse momentum distributions are important. They provide one of the possible keys to the discovery of collective modes with the partonic (quarks and gluons) degrees of freedom. (author)

  1. Blind Collective Signature Protocol

    Directory of Open Access Journals (Sweden)

    Nikolay A. Moldovyan

    2011-06-01

    Full Text Available Using the digital signature (DS scheme specified by Belarusian DS standard there are designed the collective and blind collective DS protocols. Signature formation is performed simultaneously by all of the assigned signers, therefore the proposed protocols can be used also as protocols for simultaneous signing a contract. The proposed blind collective DS protocol represents a particular implementation of the blind multisignature schemes that is a novel type of the signature schemes. The proposed protocols are the first implementations of the multisignature schemes based on Belarusian signature standard.

  2. Overview of the leiognathid species in Malaysia

    Directory of Open Access Journals (Sweden)

    Ying G. Seah

    2011-10-01

    Full Text Available The taxonomy of leiognathid species has changed drastically as a result of revisions carriedout in recent years. During the same period, new species have also been described. In this study, ataxonomic review and update of leiognathid species present in Malaysian waters was carried out.Leiognathid specimens were collected from the coastal waters of Peninsular Malaysia. All specimens wereexamined for their internal and external morphological features and osteological features. Theleiognathids of Malaysia reviewed here comprised at least 22 species. Malaysia thus has one of therichest assemblages of leiognathid species in the world. Equulites laterofenestra (Sparks & Chakrabarty,2007, Leiognathus robustus Sparks & Dunlap, 2004, and Nuchequula mannusella Chakrabarty & Sparks,2007 are new records in Malaysian waters. Some previously described species from Malaysia wereerroneously identified. These include specimens misidentified as Equulites rivulatus (Temminck &Schlegel, 1845, Gazza achlamys Jordan & Starck, 1917, and Nuchequula nuchalis (Temminck &Schlegel, 1845. E. rivulatus and G. achlamys have been recorded in the Western Pacific but thesespecies have not been encountered in Malaysia or in collections held in Malaysia.

  3. Microalgae Culture Collection, 1985-1986

    Energy Technology Data Exchange (ETDEWEB)

    1986-01-01

    The SERI Microalgae Culture Collection was established in support of the US Department of Energy's Biofuels Program to provide a repository for strains identified or developed for mass culture biomass production and to make these strains readily available to the research community. The strains in the collection have been selected for their potential in biomass fuel applications, and many produce significant quantities of cellular storage lipids. The Culture Collection Catalog lists 20 strains of ten species. Many have been tested in outdoor mass culture systems, and several have demonstrated excellent performance as biomass producers, with yields of up to 40 grams of organic matter per square meter per day. The majority of strains added to the collection this year have been isolated from inland saline waters, although marine species are included as well. We believe that the strains in this collection can provide a source of extremely useful organisms, both for laboratory experimentation and for mass culture research. 98 refs., 31 figs., 52 tabs.

  4. Approved forest stands for seed collection; 1 : 1 000 000

    International Nuclear Information System (INIS)

    This map of The Atlas represents the approved forest stands for seed collection of the Slovak Republic. The approved stands rank among the best quality ones of the wood species used for seed collection and they are the result of the previous massive selection expressed by the phenotype value in the forest economic plan. (authors)

  5. Flexicurity and Collective Bargaining

    DEFF Research Database (Denmark)

    Ibsen, Christian Lyhne; Simonsen, Mikkel Mailand

    bargaining and agreements at sector level to the development of flexicurity in print and electrical contracting of the United Kingdom, Denmark and Spain, respectively. The study is primarily based on document analysis of the three countries' collective agreements in print and electrical contracting together...... regulation of flexibility and security and its effect on labour markets. However, just as important in many countries is collective bargaining which determines terms and conditions for a significant part of the labour markets in Europe. This report analyses and compares the contribution of collective...... with 22 interviews with social partners in the concerned sectors. The main finding of the study is that collective agreements in especially Denmark, but also the UK contribute to flexicurity whereas the Spanish agreements do this to a lesser extent. In general, framework agreements on wages in all three...

  6. Walrus parts collection notes

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — The attached field diary notes provide documentation of walrus parts collection activities which occurred in the Nome and surrounding area during the periods of May...

  7. Turtle Photograph Collection

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Photos collected in marine turtle research programs are diverse, ranging from isolated observations of incidental encounters with turtles on the high-seas to...

  8. Long-term collections

    CERN Multimedia

    Collectes à long terme

    2007-01-01

    The Committee of the Long Term Collections (CLT) asks for your attention for the following message from a young Peruvian scientist, following the earthquake which devastated part of her country a month ago.

  9. NOS Hydrographic Surveys Collection

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The National Oceanic and Atmospheric Administration (NOAA) has the statutory mandate to collect hydrographic data in support of nautical chart compilation for safe...

  10. Distributive and Collective affixes

    DEFF Research Database (Denmark)

    Trondhjem, Naja Blytmann

    2015-01-01

    , repetition, habitual, continual and distributive/collective situations. The phasal aspectual affixes are further divided into “inner” phasal aspectual affixes with a verb-modifying function and scope over the verb stem, and “outer” phasal aspectual affixes with a sentencemodifying function and scope over the...... sentence. Most of the quantitative aspectual affixes have a verb-modifying function, and amount to about 33 affixes. Among the quantitative aspectual affixes about eleven affixes contains distributional/collective meaning. The distributional/collective affixes indicate the plurality of the first and /or...... of the affixes have very small semantic differences. Several affixes seem to have more than one meaning – a concrete meaning and an aspectual meaning. In this paper I shall give examples on how to differentiate between the distributive/ collective aspectual affixes.  ...

  11. Microalgal Culture Collection Transfers

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The Milford Microalgal culture Collection holds over 200 live cultures representing 13 classes of of algae. The cultures are maintained in three different growing...

  12. Hand collection - hand harvest

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — This is a summary of activities related to the collection and harvest of seeds on Neal Smith National Wildlife Refuge between 1992 and 2009. Information about hand...

  13. Glacier Photograph Collection

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The Glacier Photograph Collection is a database of photographs of glaciers from around the world, some dating back to the mid-1850's, that provide an historical...

  14. Freedom and the Collective

    Directory of Open Access Journals (Sweden)

    Straume, Ingerid S.

    2008-12-01

    Full Text Available Since Isaiah Berlin’s epitomizing Cold War-essay, "Two Concepts of Liberty, " thinkers who emphasize collective concepts of social life have carried the burden of proof against charges of totalitarian tendencies. The background is a ground figure in contemporary political thought that sets notions of collectivity against individual freedom, in a zero sum game: Either one is in favour of the individual, or one is in favour of the collective, and hence, so the bias has it, willing to sacrifice the rights and liberties of individuals. Since it is impossible to favour the latter position and remain liberal, in the wide sense of the term, this dichotomy serves to rob contemporary political thought of both its classical and revolutionary connotations, leaving only individual initiatives like lobbying and voting. Cornelius Castoriadis offers a way around this – arguably false – dichotomy, by regarding individual and collective freedom as two sides of the same coin.

  15. Introduction to collection development

    Directory of Open Access Journals (Sweden)

    Eva Kodrič-Dačič

    2007-01-01

    Full Text Available Due to constant evolution of the libraries’ cultural environment, the process of library collection development demands extensive knowledge of specific library and information skills, understanding of library’s mission, and instant reactions to the changes in book market and to demands of library users at the same time. The author systematically introduces terminology and basic skills, which are needed for effective and efficient library collection development: basic knowledge of book and information market , library collection processing and management. The article represents basic information on financing, acquisition and library procedures: selection of library materials, checking up the relevance of bibliographic data, allocation of library funds, coordinated acquisition, selection of suppliers, ordering, claiming, inflow control, distribution of library materials and inventory control, withdrawal of library materials and monitoring the comprehensiveness and relevance of library collections.

  16. Seed collection notes

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — This document contains tables, lists, and notes related to tallgrass prairie seed collection on Neal Smith National Wildlife Refuge in 1992.

  17. Collective excitations in nuclei

    Energy Technology Data Exchange (ETDEWEB)

    Chomaz, Ph. [Grand Accelerateur National d`Ions Lourds (GANIL), 14 - Caen (France); Collaboration: La Direction des Sciences de la Matiere du CEA (FR); Le Fonds National de la Recherche Scientifique de Belgique (BE)

    1998-12-31

    The properties of the nucleus cannot be reduced to the properties of its constituents: it is a complex system. The fact that many properties of the nucleus are consequences of the existence of mean-field potential is a manifestation of this complexity. In particular, the nucleons can thus self-organize in collective motions such as giant resonances. Therefore the study of this collective motions is a very good tool to understand the properties of the nucleus itself. The purpose of this article is to stress some aspects of these collective vibrations. We have studied how an ensemble of fermions as the nucleus can self-organize in collective vibrations which are behaving like a gas of bosons in weak interaction. Understanding of these phenomena remains one of the important subjects of actuality in the context of quantal systems in strong interaction. In particular, the study of the states with one or two vibration quanta provides a direct information on the structure of nuclei close to their ground states. Moreover, some collective states appear to be very robust against the onset of chaos. This is the case of the hot giant dipole built on top of a hot nucleus which seems to survive up to rather high temperatures. Their sudden disappearance is still a subject of controversy. It may be that the mean-field and the associated collective states are playing a crucial role also in catastrophic processes such as the phase-transitions. Indeed, when the system is diluted the collective vibrations may become unstable and it seems that these unstable modes provide a natural explanation to the self organization of the system in drops. Finally, considering the diversity of the different structures of exotic nuclei one may expect new vibration types. All these studies are showing the diversity of the collective motions of strongly correlated quantum systems such as the nucleus but many open questions remain to be solved. (authors) 304 refs., 53 figs., 5 tabs.

  18. Collective excitations in nuclei

    International Nuclear Information System (INIS)

    The properties of the nucleus cannot be reduced to the properties of its constituents: it is a complex system. The fact that many properties of the nucleus are consequences of the existence of mean-field potential is a manifestation of this complexity. In particular, the nucleons can thus self-organize in collective motions such as giant resonances. Therefore the study of this collective motions is a very good tool to understand the properties of the nucleus itself. The purpose of this article is to stress some aspects of these collective vibrations. We have studied how an ensemble of fermions as the nucleus can self-organize in collective vibrations which are behaving like a gas of bosons in weak interaction. Understanding of these phenomena remains one of the important subjects of actuality in the context of quantal systems in strong interaction. In particular, the study of the states with one or two vibration quanta provides a direct information on the structure of nuclei close to their ground states. Moreover, some collective states appear to be very robust against the onset of chaos. This is the case of the hot giant dipole built on top of a hot nucleus which seems to survive up to rather high temperatures. Their sudden disappearance is still a subject of controversy. It may be that the mean-field and the associated collective states are playing a crucial role also in catastrophic processes such as the phase-transitions. Indeed, when the system is diluted the collective vibrations may become unstable and it seems that these unstable modes provide a natural explanation to the self organization of the system in drops. Finally, considering the diversity of the different structures of exotic nuclei one may expect new vibration types. All these studies are showing the diversity of the collective motions of strongly correlated quantum systems such as the nucleus but many open questions remain to be solved. (authors)

  19. Sparse matrix test collections

    Energy Technology Data Exchange (ETDEWEB)

    Duff, I.

    1996-12-31

    This workshop will discuss plans for coordinating and developing sets of test matrices for the comparison and testing of sparse linear algebra software. We will talk of plans for the next release (Release 2) of the Harwell-Boeing Collection and recent work on improving the accessibility of this Collection and others through the World Wide Web. There will only be three talks of about 15 to 20 minutes followed by a discussion from the floor.

  20. Introduction to collection development

    OpenAIRE

    Eva Kodrič-Dačič

    2007-01-01

    Due to constant evolution of the libraries’ cultural environment, the process of library collection development demands extensive knowledge of specific library and information skills, understanding of library’s mission, and instant reactions to the changes in book market and to demands of library users at the same time. The author systematically introduces terminology and basic skills, which are needed for effective and efficient library collection development: basic knowledge of book and inf...

  1. Rehabilitating the Stroke Collection

    Directory of Open Access Journals (Sweden)

    Mary Grimmond

    2006-06-01

    Full Text Available Objective The aim of this project was to complete an analysis of monograph and audiovisual items held in the Central Coast Health Service (CCHS Libraries and containing information relevant to the treatment of acute stroke. Acute stroke is treated by multidisciplinary teams of clinicians based at two hospitals within the CCHS. The adequacy of the library collection was measured by subject coverage and age. Methods The methodology used consisted of three main steps: a literature review; design, administration, and analysis of a questionnaire to members of the CCHS Acute Stroke Team; and an analysis of the libraries’ collections. The research project utilised project management methodology and an evidence based librarianship framework. Results The questionnaire revealed that electronic resources were by far the most frequently used by participants, followed in order by print journals, books, interlibrary loan articles, and audiovisual items. Collection analysis demonstrated that the monograph and audiovisual collections were adequate in both scope and currency to support the information needs of Acute Stroke Team members, with the exception of resources to support patient education. Conclusion The researchers developed recommendations for future collection development in the area of acute stroke resources. Conducting this project within the evidence based librarianship framework helped to develop library staff members’ confidence in their ability to make future collection development decisions, informed by the target group’s information needs and preferences. The collection analysis methodology was designed to be replicated, and new specialist groups within the client base of the library will be targeted to repeat the collection analysis process.

  2. Collective Identity and Conflict

    OpenAIRE

    Jensen, Nanna Gorm; Pinhasi, Tami; Christensen, Jonas Juhl; Vahl, Hans Peter; Johannsen, Christina; Christensen, Julie Hellesøe; Stockner, Selma Maria; Adler, Tara Maria Sellner

    2009-01-01

    This project, “Collective Identity and Conflict”, is a largely theoretical approach to gaining an understanding of how identity groups are shaped and reinforced, and why opposing groups get into seemingly unsolvable conflicts. We create a synthesis of theory on collective identity and social conflict mechanisms by drawing upon the fields of social psychology, sociology and cultural studies. Our ambition is to construct a comprehensive body of knowledge, which will be helpful when analyzing an...

  3. The Arthur Hailey Collection

    OpenAIRE

    Lundstrom, Thomas E.

    2013-01-01

    The Arthur Hailey Collection consists of over 800 items from the estate of Arthur Hailey: personal copies of the author’s commercial publications as well as mementos from the study at his Lyford Cay home in The Bahamas. These materials, along with the manuscript collection donated to the Thomas Fisher Rare Book Library, University of Toronto, can provide scholars with resources to support research about this bestselling author.

  4. COLLECTIVE REPUTATION AND QUALITY

    OpenAIRE

    Winfree, Jason A.; McCluskey, Jill J.

    2003-01-01

    Firms who sell a regional or specialty product often share a common or collective reputation, which is based on the group's aggregate quality. The dynamic problem of collective reputation is similar to the natural resource extraction problems. Therefore, for the analysis of this particular problem, we use differential games. If there is unrestricted access to a common property resource (the reputation stock), agents perceive its shadow value to be zero and extract too rapidly; i.e, they all "...

  5. A Survey of Collectives

    Science.gov (United States)

    Tumer, Kagan; Wolpert, David

    2004-01-01

    Due to the increasing sophistication and miniaturization of computational components, complex, distributed systems of interacting agents are becoming ubiquitous. Such systems, where each agent aims to optimize its own performance, but where there is a well-defined set of system-level performance criteria, are called collectives. The fundamental problem in analyzing/designing such systems is in determining how the combined actions of self-interested agents leads to 'coordinated' behavior on a iarge scale. Examples of artificial systems which exhibit such behavior include packet routing across a data network, control of an array of communication satellites, coordination of multiple deployables, and dynamic job scheduling across a distributed computer grid. Examples of natural systems include ecosystems, economies, and the organelles within a living cell. No current scientific discipline provides a thorough understanding of the relation between the structure of collectives and how well they meet their overall performance criteria. Although still very young, research on collectives has resulted in successes both in understanding and designing such systems. It is eqected that as it matures and draws upon other disciplines related to collectives, this field will greatly expand the range of computationally addressable tasks. Moreover, in addition to drawing on them, such a fully developed field of collective intelligence may provide insight into already established scientific fields, such as mechanism design, economics, game theory, and population biology. This chapter provides a survey to the emerging science of collectives.

  6. [The snakes of Senegal: an annotated species list].

    Science.gov (United States)

    Trape, J F; Mané, Y

    2002-08-01

    Between 1990 and 2001, the laboratory of Paludologie of IRD at Dakar collected over 5,500 snakes from all over Senegal. By studying this collection, an entirely new species was discovered for science and eight new species for Senegal. The presence of many specimens of rare species and the great number of localities from which snakes were collected also allowed us to solve several delicate taxonomic problems and better to specify the biogeography of Senegalese snakes. Currently, the presence in Senegal of at least 55 different species has been established with certainty. The data collected simultaneously on the burden of snakebites for public health shows considerable differences according to geographic area, with populations from south-eastern Senegal being more exposed to the risk of death by snakebite. PMID:12404856

  7. AFSC/ABL: Juvenile rockfish DNA species identification

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Many pelagic juvenile rockfish (Sebastes) were collected in juvenile salmonid surveys in the Gulf of Alaska (GOA) from 1998 to 2002. Often species identification of...

  8. Species Observations (poly) - San Diego County [ds648

    Data.gov (United States)

    California Department of Resources — Created in 2009, the SanBIOS database serves as a single repository of species observations collected by various departments within the County of San Diego's Land...

  9. Peronospora galligena Blumer - new for Poland species of down mildew

    Directory of Open Access Journals (Sweden)

    J. Kućmierz

    2014-11-01

    Full Text Available The author present species new for mycoflora of Poland. This materials was collected in Botanical Garden of the Jagiellonian University in Cracow, and in Pieniny Montains (Western Carpations.

  10. Virulence of Fusarium species to alfalfa seedlings

    Directory of Open Access Journals (Sweden)

    Krnjaja Vesna

    2005-01-01

    Full Text Available In in vitro conditions, virulence of 91 isolates of species Fusarium genus (F. oxysporum, F. solani, F. acuminatum, F. equiseti, F. arthrosporioides, F. prolifera- tum, F. avenaceum, F. semitectum, F. tricinctum, F. sporotrichioides and F. graminearum towards alfalfa seedlings was investigated. Isolates of investigated species originated from diseased alfalfa plants collected at four locations in Serbia based on symptoms of wilting caused by Fusarium and root rotting. Pathogenicity and virulence of investigated isolates of Fusarium spp. were determined by visual evaluation of inoculated seedlings of cultivar K28 in laboratory conditions. All isolated of investigated species had pathogenic effect on alfalfa seedlings which expressed symptoms such as necrosis of root, moist rotting and "melting of seedlings". Colour of necrotic root tissue varied from light brown, brown lipstick red to explicit black, depending on the Fusarium species. Strong virulence was established in 48 isolates, medium virulence in 31 and weak virulence in 12 isolates.

  11. Virulence of Fusarium species to alfalfa seedlings

    Directory of Open Access Journals (Sweden)

    Krnjaja Vesna

    2005-01-01

    Full Text Available In in vitro conditions, virulence of 91 isolates of species Fusarium genus (F. oxysporum, F. solani, F. acuminatum, F. equiseti, F. arthrosporioides, F. proliferatum, F. avenaceum, F. semitectum, F. tricinctum, F. sporotrichioides and F. graminearum towards alfalfa seedlings was investigated. Isolates of investigated species originated from diseased alfalfa plants collected on four locations in Serbia based on symptoms of wilting caused by fusarium and root rotting. Pathogenicity and virulence of investigated isolates of Fusarium spp. were determined by visual evaluation of inoculated seedlings of cultivars K28 in laboratory conditions. All isolated of investigated species had pathogenic effect on alfalfa seedlings, which expressed symptoms such as necrosis of root, moist rotting and "melting of seedlings". Colour of necrotic root tissue varied from light brown, brown, lipstick red to explicit black, depending on the Fusarium species. Strong virulence was established in 48 isolates, medium virulence in 31 and weak virulence in 12 isolates.

  12. ODONATA FROM BULGARIA IN THE COLLECTION OF NATIONAL MUSEUM OF BOSNIA AND HERZEGOVINA

    OpenAIRE

    Kulijer, Dejan; Marinov, Milen

    2010-01-01

    The entomological collection of the National Museum of Bosnia and Herzegovina is one of the oldest Balkan insect collections. Eighty-seven (87) dragonfly specimens from 19 species that originate from Bulgaria were found in this collection. In this paper we present the oldest and till now unknown records of dragonflies from Bulgaria from this collection. Some interesting and new distribution data on several species are also presented and discussed.

  13. Six Species of Penicillium Associated with Blue Mold of Grape

    OpenAIRE

    KIM, WON KI; Sang, Hyun Kyu; Woo, Sung Kyoon; Park, Myung Soo; Paul, Narayan Chandra; Yu, Seung Hun

    2007-01-01

    Grape fruits with blue mold symptoms were collected from house storages in different locations in Korea and were investigated for their association with Penicillium species. A total of 12 isolates of Penicillium were isolated from the collected fruits. Based on morphological and cultural characteristics and β-tublin gene sequence data analysis, they were identified as P. bialowiezense, P. citrinum, P. echinulatum, P. expansum, P. solitum and unidentified Penicillium species. P. solitum was th...

  14. The Origin of Species

    NARCIS (Netherlands)

    Darwin, Charles

    2005-01-01

    In The Origin of Species Darwin outlined his theory of evolution, which proposed that species had been evolving and differentiating over time under the influence of natural selection. On its publication it became hugely influential, bringing about a seismic shift in the scientific view of humanitys

  15. 76 FR 27016 - Endangered and Threatened Species; Take of Anadromous Fish

    Science.gov (United States)

    2011-05-10

    ... to Pacific salmon. The proposed research would increase knowledge of species listed under the Endangered Species Act (ESA) and help guide management and conservation efforts. DATES: Comments or requests... sediment retention structure. Also, researchers would collect information that would increase...

  16. Dasybasis elquiensis, a new species of horse fly from Northern Chile (Diptera: Tabanidae: Diachlorini

    Directory of Open Access Journals (Sweden)

    González Christian R

    2000-01-01

    Full Text Available The female of Dasybasis elquiensis, new species, is described and illustrated from specimens collected in Paso La Ternera, Elqui Province, north Chile. Its relationships to other Dasybasis species are discussed.

  17. Extinction risks of Amazonian plant species.

    Science.gov (United States)

    Feeley, Kenneth J; Silman, Miles R

    2009-07-28

    Estimates of the number, and preferably the identity, of species that will be threatened by land-use change and habitat loss are an invaluable tool for setting conservation priorities. Here, we use collections data and ecoregion maps to generate spatially explicit distributions for more than 40,000 vascular plant species from the Amazon basin (representing more than 80% of the estimated Amazonian plant diversity). Using the distribution maps, we then estimate the rates of habitat loss and associated extinction probabilities due to land-use changes as modeled under 2 disturbance scenarios. We predict that by 2050, human land-use practices will have reduced the habitat available to Amazonian plant species by approximately 12-24%, resulting in 5-9% of species becoming "committed to extinction," significantly fewer than other recent estimates. Contrary to previous studies, we find that the primary determinant of habitat loss and extinction risk is not the size of a species' range, but rather its location. The resulting extinction risk estimates are a valuable conservation tool because they indicate not only the total percentage of Amazonian plant species threatened with extinction but also the degree to which individual species and habitats will be affected by current and future land-use changes. PMID:19617552

  18. Species diversity of vascular plants in Si Phang-nga National Park, Phangnga Province

    OpenAIRE

    Leeratiwong, C.; Jornead, S.

    2005-01-01

    A survey of the vascular plants in Si Phang-nga National Park, Phangnga Province, was conducted from September 2002 to August 2003. Five hundred and forty three species of 287 genera and 111 families were collected. The most diverse family was Rubiaceae, 53 species. Four species of these collected plants are endemic to Thailand, Argostemma lobulatum, Aristolochia helix, Crinum thaianum and Mallotus hymenophyllus) and three species, Hedyotis hedyotidea, Lipocarpha microcephala and Pterolobium ...

  19. Species diversity of vascular plants in Si Phang-nga National Park, Phangnga Province

    Directory of Open Access Journals (Sweden)

    Leeratiwong, C.

    2005-07-01

    Full Text Available A survey of the vascular plants in Si Phang-nga National Park, Phangnga Province, was conducted from September 2002 to August 2003. Five hundred and forty three species of 287 genera and 111 families were collected. The most diverse family was Rubiaceae, 53 species. Four species of these collected plants are endemic to Thailand, Argostemma lobulatum, Aristolochia helix, Crinum thaianum and Mallotus hymenophyllus and three species, Hedyotis hedyotidea, Lipocarpha microcephala and Pterolobium intergum are newly recorded for southern Thailand.

  20. A new species of Osmia from Iran (Hymenoptera: Megachilidae):

    OpenAIRE

    Engel, Michael S.

    2006-01-01

    A new species of Osmia, subgenus Helicosmia, is described and figured from a male and female collected near Karaj, Iran. Osmia (Helicosmia) mediana sp. n. can be superficially confused with O. (H.) indigotea Morawitz and in other respects O. (H.) adae Bingham. The new species is diagnosed and distinguished from other Helicosmia.

  1. Two Species of Myxomycetes Causing Slime Mold of Sweet Potato

    OpenAIRE

    Kim, Wan Gyu; Lee, Sang Yeob; Cho, Weon Dae

    2007-01-01

    Specimens collected from sweet potato plants with slime mold symptoms in fields in Daejeon, Korea were examined. Two species of Myxomycetes, Fuligo septica and Stemonitis herbatica were identified based on their morphological characteristics. This is the first report that the two species of Myxomycetes cause slime mold of sweet potato in Korea.

  2. Stenocybe fragmenta, a new species of Mycocaliciaceae with fragmenting spores

    Science.gov (United States)

    Peterson, E.B.; Rikkinen, Jouko

    1998-01-01

    The new species Stenocybe fragmenta (Ascomycota, Mycocaliciaceae) is described from western North America. The species was collected from twigs of Cercocarpus montanus and Rhamnus purshiana. Stenocybe fragmenta is characterized by 5-7 septate, 18-30 I?m long ascospores that fragment at maturity. This is the first report of spore fragmentation among the Mycocaliciaceae.

  3. Fostering collective intelligence education

    Directory of Open Access Journals (Sweden)

    Jaime Meza

    2016-06-01

    Full Text Available New educational models are necessary to update learning environments to the digitally shared communication and information. Collective intelligence is an emerging field that already has a significant impact in many areas and will have great implications in education, not only from the side of new methodologies but also as a challenge for education. This paper proposes an approach to a collective intelligence model of teaching using Internet to combine two strategies: idea management and real time assessment in the class. A digital tool named Fabricius has been created supporting these two elements to foster the collaboration and engagement of students in the learning process. As a result of the research we propose a list of KPI trying to measure individual and collective performance. We are conscious that this is just a first approach to define which aspects of a class following a course can be qualified and quantified.

  4. Collection for Ecuador

    CERN Multimedia

    Staff Association

    2016-01-01

    After the violent earthquake that caused the death of hundreds of people, and left thousands wounded and homeless in Ecuador, we appeal to your generosity. We are starting a collection today to help the victims, and the funds will be donated to the INEPE Institute in Quito. This organization, known at CERN for many years as it has been supported by the Long Term Collections of the Staff Association, will be responsible for sending the proceeds of the collection directly to the victims in the field. On behalf of the CERN Management and the CERN Staff Association Fabiola Gianotti, Director General, and Alessandro Raimondo, President of the Staff Association =========================== Bank account details for donations: Bank account holder: Staff Association CERN - 1211 GENEVA 23 Account number: 279-HU106832.1 IBAN: CH85 0027 9279 HU10 6832 1 BIC: UBSWCHZH80A Please mention: Ecuador

  5. Collective nuclear dynamics. Proceedings

    International Nuclear Information System (INIS)

    The Fourth International school on nuclear physics was help on 29 Aug - 7 Sep, 1994 in Ukraine. The specialists discussed following subjects:liquid drop and the shell correction method; nuclear deformation energy and fission; nuclear structure at high spins, superdeformed states, structure of excited and exotic nuclei; nuclear fluid dynamics and large scale collective motion; order and chaos as they relate to the collective motion; quantum and interference phenomena in nuclear collisions; quasi-fission and multinucleon fragmentation effects; shell effects in non-nuclear systems; new nuclear facilities

  6. Collection for Nepal

    CERN Multimedia

    Staff Association

    2015-01-01

    Following the violent earthquake in Nepal and neighbouring countries, a collection of money to help the victims was organized at CERN. A sum of 34 800 CHF was collected, and transferred to the NGO Live to Love. On July 22, the NGO sent a letter to CERN thanking for the support (see below). You can also find more information concerning this NGO and how they use their funds on our website: http://staff-association.web.cern.ch/sites/staff-association.web.cern.ch/files/Docs/Live_to_Love.pdf

  7. Collective nuclear dynamics. Abstracts

    International Nuclear Information System (INIS)

    The fourth International school on nuclear physics was help on 29 Aug - 7 Sep, 1994 in Ukraine. The specialists discussed following subjects: liquid drop and the shell correction method; nuclear deformation energy and fission; nuclear structure at high spins, superdeformed states, structure of excited and exotic nuclei; nuclear fluid dynamics and large scale collective motion; order and chaos as they relate to the collective motion; quantum and interference phenomena in nuclear collisions; quasi-fission and multinucleon fragmentation effects; shell effects in non-nuclear systems; new nuclear facilities

  8. Collective Action under Globalization

    DEFF Research Database (Denmark)

    Scheuer, Steen

    organizations deliberating collective action. Institutional factors are especially important for understanding still persisting inter-country variance, and they point to a novel industrial conflict calculus for employees. This calculus seems to entail a more restricted use, but not the withering away of the......Collective action in the form of industrial conflict has declined dramatically since the high tide in the 1970s in Europe. This article argues that this decline is the result of significant changes in both economic and institutional factors, influencing the calculations of employees and of their...

  9. Impedance and Collective Effects

    CERN Document Server

    Metral, E; Rumolo, R; Herr, W

    2013-01-01

    This document is part of Subvolume C 'Accelerators and Colliders' of Volume 21 'Elementary Particles' of Landolt-Börnstein - Group I 'Elementary Particles, Nuclei and Atoms'. It contains the Chapter '4 Impedance and Collective Effects' with the content: 4 Impedance and Collective Effects Introduction 4.1 Space Charge 4.2 Wake Fields and Impedances 4.3 Coherent Instabilities 4.4 Landau Damping 4.5 Two-Stream Effects (Electron Cloud and Ions) 4.6 Beam-Beam Effects 4.7 Numerical Modelling

  10. Novelty and Collective Attention

    CERN Document Server

    Wu, Fang

    2007-01-01

    The subject of collective attention is central to an information age where millions of people are inundated with daily messages. It is thus of interest to understand how attention to novel items propagates and eventually fades among large populations. We have analyzed the dynamics of collective attention among one million users of an interactive website -- \\texttt{digg.com} -- devoted to thousands of novel news stories. The observations can be described by a dynamical model characterized by a single novelty factor. Our measurements indicate that novelty within groups decays with a stretched-exponential law, suggesting the existence of a natural time scale over which attention fades.

  11. A new species of Camchaya (Asteraceae, Vernonieae from Thailand

    Directory of Open Access Journals (Sweden)

    Sukhonthip Bunwong

    2012-05-01

    Full Text Available Camchaya thailandica Bunwong, Chantar. & S.C.Keeley, sp. nov. from Phu Phrabat Historical Park, Udon Thani, Thailand is described as a new species. Plant of this new species are similar to C. gracilis (Gagnep. Bunwong & H.Rob. but differ inovate phyllaries without margin spines, 10-ribbed achenes, and broadly ovate leaves. This species is a rare endemic known only from the type collection and probably confined to open areas of sandstone hills in Udon Thani province.

  12. Diplycosia platyphylla (Ericaceae), a new species from Mindanao, Philippines

    OpenAIRE

    Fritsch, Peter; Amoroso, Victor

    2016-01-01

    Diplycosia platyphylla P.W.Fritsch, a new species from Mindanao Island, Philippines, is described and illustrated. This species is most similar to the Bornean D. urceolata but differs by its green or slightly flushed pink petioles 4–7 mm long, wider leaf blades, acute calyx lobe apices, and lavender mature fruiting calyx. The new species is known only from a single collection made from Mount Apo in North Cotabato Province, southern Mindanao.

  13. Morphometric study of some Salvia L. (Lamiaceae) species in Iran

    OpenAIRE

    Navaz Kharazian

    2012-01-01

    This study concerns the morphological studies in some Salvia L. (Lamiaceae) species in Iran. In order to elucidate the taxonomic status and morphological studies, 53 accessions of 12 Salvia species were collected from their natural habitats in Iran. A total of 17 quantitative and 13 qualitative morphological characters were selected as diagnostic characters in Salvia species through the use of numerical methods. The statistical analysis consisted of cluster analysis with Euclidean distance c...

  14. Two new species of Parapharyngodon parasites of Sceloporus pyrocephalus, with a key to the species found in Mexico (Nematoda, Pharyngodonidae)

    Science.gov (United States)

    Garduño-Montes de Oca, Edgar Uriel; Mata-López, Rosario; León-Règagnon, Virginia

    2016-01-01

    Abstract Two new species of Parapharyngodon collected from the intestine of the Mexican boulder spiny lizard Sceloporus pyrocephalus are described. This study increases to 49 the number of valid species assigned to Parapharyngodon worldwide, 11 of them distributed in Mexico. Males of the two new species share the presence of four pairs of caudal papillae, an anterior echinate cloacal lip and the presence of lateral alae; however, both differ from each other in lateral alae extension and echinate cloacal anterior lip morphology. Females of both species have a prebulbar uterus and eggs shell punctuate with pores, characteristics shared with few other species of Parapharyngodon. Both new species differ from other congeneric species in the papillar arrangement, the anterior cloacal lip morphology, the lateral alae extension and total length/spicule ratio. A taxonomic key for the species of Parapharyngodon distributed in Mexico is provided. PMID:27006602

  15. Exploring similarities among many species distributions

    Science.gov (United States)

    Simmerman, Scott; Wang, Jingyuan; Osborne, James; Shook, Kimberly; Huang, Jian; Godsoe, William; Simons, Theodore R.

    2012-01-01

    Collecting species presence data and then building models to predict species distribution has been long practiced in the field of ecology for the purpose of improving our understanding of species relationships with each other and with the environment. Due to limitations of computing power as well as limited means of using modeling software on HPC facilities, past species distribution studies have been unable to fully explore diverse data sets. We build a system that can, for the first time to our knowledge, leverage HPC to support effective exploration of species similarities in distribution as well as their dependencies on common environmental conditions. Our system can also compute and reveal uncertainties in the modeling results enabling domain experts to make informed judgments about the data. Our work was motivated by and centered around data collection efforts within the Great Smoky Mountains National Park that date back to the 1940s. Our findings present new research opportunities in ecology and produce actionable field-work items for biodiversity management personnel to include in their planning of daily management activities.

  16. BIOMASS, Displacement Volume, WATER DEPTH, SPECIES IDENTIFICATION and other tows - plankton tows data collected in the Coastal Waters of SE Alaska, Gulf of Alaska and North Pacific Ocean on the JOHN N. COBB cruises SECM, jc0005 and others as part of the NEP project from 1997-05-24 to 2006-08-20 (NODC Accession 0115197)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0115197 includes discrete sample, meteorological, tows - plankton tows and biological data collected aboard the JOHN N. COBB during cruises SECM,...

  17. SPECIES IDENTIFICATION - ORGANISM LENGTH, HABITAT, STOMACH CONTENTS - FULLNESS, STOMACH CONTENTS - CONTENT WEIGHT and other fish examination data collected in the Coastal Waters of SE Alaska, Gulf of Alaska and North Pacific Ocean on the JOHN N. COBB cruises SECM, jc0009 and others as part of the NEP project from 1997-05-21 to 2006-07-31 (NODC Accession 0115196)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0115196 includes biological and fish examination data collected aboard the JOHN N. COBB during cruises SECM, jc0009, jc0012, jc0016, jc0018, jc0105,...

  18. ICE - COVERAGE, ICE - TYPE, SEDIMENTS - PERCENT COVER, SPECIES IDENTIFICATION - COUNT and precipitation type visual observation data collected in the South Atlantic Ocean and South Pacific Ocean on the NATHANIEL B. PALMER cruises NBP0103, NBP0104 and others as part of the Southern Ocean GLOBEC project from 2001-04-29 to 2002-09-09 (NODC Accession 0112763)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0112763 includes meteorological, visual observation and physical data collected aboard the NATHANIEL B. PALMER during cruises NBP0103, NBP0104,...

  19. ANIMALS - INDIVIDUAL - COUNTS, Flight direction, SPECIES IDENTIFICATION, ANIMALS - GROUP - BEHAVIOR and WIND SPEED visual observation data collected in the North Pacific Ocean on the NEW HORIZON cruises NH0005 and NH0007 as part of the NEP project from 2000-05-30 to 2000-08-12 (NODC Accession 0113338)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0113338 includes meteorological, visual observation and biological data collected aboard the NEW HORIZON during cruises NH0005 and NH0007 in the...

  20. SPECIES IDENTIFICATION - LIFE STAGE and TAXONOMIC CODE tows - plankton tows data collected in the North Atlantic Ocean on the ALBATROSS IV, ENDEAVOR and OCEANUS cruises AL9506, AL9605 and others as part of the GB project from 1995-02-12 to 1999-05-21 (NODC Accession 0107117)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0107117 includes tows - plankton tows and biological data collected aboard the ALBATROSS IV, ENDEAVOR and OCEANUS during cruises AL9506, AL9605,...

  1. BIOMASS, FLUORESCENCE and species abundance tows - undulating tow and tows data collected in the North Pacific Ocean on the NEW HORIZON, RANGE RECOVERER and THOMAS G. THOMPSON cruises NH0005, NH0007 and others as part of the NEP project from 2000-05-30 to 2002-08-16 (NODC Accession 0114240)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0114240 includes tows - undulating tow, tows and biological data collected aboard the NEW HORIZON, RANGE RECOVERER and THOMAS G. THOMPSON during...

  2. SPECIES IDENTIFICATION - LIFE STAGE and TAXONOMIC CODE pump cast data collected in the North Atlantic Ocean on the ALBATROSS IV, ENDEAVOR and OCEANUS cruises AL9505, AL9506 and others as part of the GB project from 1995-01-12 to 1999-06-23 (NODC Accession 0107647)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0107647 includes pump cast and biological data collected aboard the ALBATROSS IV, ENDEAVOR and OCEANUS during cruises AL9505, AL9506, AL9508, AL9605,...

  3. SPECIES IDENTIFICATION - LIFE STAGE and TAXONOMIC CODE tows - plankton tows data collected in the North Atlantic Ocean on the ALBATROSS IV, ENDEAVOR and OCEANUS cruises AL9506, AL9605 and others as part of the GB project from 1995-02-12 to 1999-05-21 (NODC Accession 0107469)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0107469 includes tows - plankton tows and biological data collected aboard the ALBATROSS IV, ENDEAVOR and OCEANUS during cruises AL9506, AL9605,...

  4. SPECIES IDENTIFICATION - LIFE STAGE and TAXONOMIC CODE pump cast data collected in the North Atlantic Ocean on the ALBATROSS IV, ENDEAVOR and OCEANUS cruises AL9505, AL9506 and others as part of the GB project from 1995-01-12 to 1999-06-23 (NODC Accession 0107285)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0107285 includes pump cast and biological data collected aboard the ALBATROSS IV, ENDEAVOR and OCEANUS during cruises AL9505, AL9506, AL9508, AL9605,...

  5. BIOMASS, TAXONOMIC CODE and species abundance tows data collected in the South Atlantic Ocean and South Pacific Ocean on the NATHANIEL B. PALMER cruises NBP0103 and NBP0104 as part of the Southern Ocean GLOBEC project from 2001-04-30 to 2001-08-26 (NODC Accession 0112172)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0112172 includes tows and biological data collected aboard the NATHANIEL B. PALMER during cruises NBP0103 and NBP0104 in the South Atlantic Ocean and...

  6. HABITAT, WATER TEMPERATURE, SPECIES IDENTIFICATION, cloud amount/frequency and other trawl data collected in the Gulf of Alaska and North Pacific Ocean on the CHARTER/FISHING BOATS cruises GP0108, GP0207-01 and others as part of the NEP project from 2001-07-18 to 2004-11-08 (NODC Accession 0115261)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0115261 includes meteorological, biological, physical and trawl data collected aboard the CHARTER/FISHING BOATS during cruises GP0108, GP0207-01,...

  7. HABITAT, WATER TEMPERATURE, SPECIES IDENTIFICATION and INDIVIDUAL FISH EXAMINATION - AGE fish examination data collected in the Gulf of Alaska and North Pacific Ocean on the CHARTER/FISHING BOATS cruises GP0108, GP0207-01 and others as part of the NEP project from 2001-07-18 to 2004-11-08 (NODC Accession 0115263)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0115263 includes fish examination, biological and physical data collected aboard the CHARTER/FISHING BOATS during cruises GP0108, GP0207-01,...

  8. ANIMALS - INDIVIDUAL - COUNTS, SPECIES IDENTIFICATION and ANIMALS - GROUP - BEHAVIOR visual observation data collected in the South Pacific Ocean on the NATHANIEL B. PALMER cruises NBP0103, NBP0104 and others as part of the Southern Ocean GLOBEC project from 2001-04-29 to 2002-09-09 (NODC Accession 0112819)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0112819 includes visual observation and biological data collected aboard the NATHANIEL B. PALMER during cruises NBP0103, NBP0104, NBP0202 and NBP0204...

  9. ANIMALS - INDIVIDUAL - COUNTS, cetacean and SPECIES IDENTIFICATION marine mammal observation and visual observation data collected in the North Pacific Ocean on the NEW HORIZON cruises NH0005 and NH0007 as part of the NEP project from 2000-05-31 to 2000-08-12 (NODC Accession 0113948)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0113948 includes marine mammal observation, visual observation and biological data collected aboard the NEW HORIZON during cruises NH0005 and NH0007...

  10. STOMACH CONTENTS - FULLNESS, WATER TEMPERATURE, STOMACH CONTENTS - PREY COUNT, SPECIES IDENTIFICATION and other fish examination data collected in the Gulf of Alaska and North Pacific Ocean on the CHARTER/FISHING BOATS cruises GP0108, GP0207-01 and MF0310 as part of the NEP project from 2001-07-18 to 2003-08-08 (NODC Accession 0115262)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0115262 includes biological, fish examination and physical data collected aboard the CHARTER/FISHING BOATS during cruises GP0108, GP0207-01 and...

  11. WIND DIRECTION, Snow thickness, ICE - TYPE, SPECIES IDENTIFICATION - COUNT and other visual observation data collected in the Indian Ocean, South Atlantic Ocean and South Pacific Ocean on the LAURENCE M. GOULD and NATHANIEL B. PALMER cruises LMG0106, LMG0205 and others as part of the Southern Ocean GLOBEC project from 2001-07-26 to 2002-09-15 (NODC Accession 0112820)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0112820 includes meteorological, visual observation and physical data collected aboard the LAURENCE M. GOULD and NATHANIEL B. PALMER during cruises...

  12. BIOMASS, SALINITY, TEMPERATURE, TAXONOMIC CODE and species abundance tows - plankton tows data collected in the North Atlantic Ocean on the ENDEAVOR and OCEANUS cruises EN307, EN330 and others as part of the GB project from 1997-10-11 to 1999-12-09 (NODC Accession 0106090)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0106090 includes tows - plankton tows, biological and physical data collected aboard the ENDEAVOR and OCEANUS during cruises EN307, EN330, EN331,...

  13. SPECIES IDENTIFICATION - DRY WEIGHT and Displacement Volume tows data collected in the South Atlantic Ocean and South Pacific Ocean on the NATHANIEL B. PALMER cruises NBP0103, NBP0104 and others as part of the Southern Ocean GLOBEC project from 2001-04-30 to 2002-09-11 (NODC Accession 0112163)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0112163 includes tows and biological data collected aboard the NATHANIEL B. PALMER during cruises NBP0103, NBP0104, NBP0202 and NBP0204 in the South...

  14. Description of two new species of Tetracneminae Howard (Hymenoptera: Encyrtidae) from India with key to the species

    OpenAIRE

    Tirunagaru Krishnachaitanya; Sagadai Manickavasagam

    2016-01-01

    Two new species of Tetracneminae (Hymenoptera: Chalcidoidea: Encyrtidae) are described from the material collected from Andhra Pradesh and Tamil Nadu states of India. They are: Charitopus montibus sp. nov. and Eotopus elongare sp. nov. A key to the Indian species of both genera is provided.

  15. Review of Mexican Species of Podogaster Brullé (Hymenoptera: Ichneumonidae: Anomaloninae) with Description of Two New Species

    OpenAIRE

    González Moreno, Alejandra; Bordera Sanjuán, Santiago

    2013-01-01

    Two new species of Podogaster Brullé, Podogaster brunneus n. sp. and Podogaster lagartensis n. sp., are described. The material was collected with Malaise traps operated for a year in the Ría Lagartos Biosphere Reserve, a dry tropical area of Southeast Mexico. Podogaster rosteri Gauld & Bradshaw is synonymized with Podogaster mexicanus (Cresson). A key to the Mexican species is also provided.

  16. A DIY Collection

    Science.gov (United States)

    Freedman, Jenna

    2006-01-01

    Chris Dodge, a renowned alternative pressologist and the librarian at "Utne" magazine, has been known to say, "Every library should be a special library." In order to meet this challenge, the librarians at Barnard College decided to start a collection of underground publications known as zines. In this article, the author describes how librarians…

  17. Quick Fixes: Collection Development

    Science.gov (United States)

    Nabb, Alicia

    2010-01-01

    The Do It Yourself (DIY) section is an essential and well-used part of the public library's collection and must be kept up-to-date to remain valuable, since tools, materials, and building codes are always changing. Current economic decline has increased the topic's popularity as homeowners choose to remodel rather than buy, or attempt to make…

  18. Collective Negotiations in Education.

    Science.gov (United States)

    Piele, Philip

    1968-01-01

    This literature review examines current documents on collective negotiations in education that were processed by the Clearinghouse on Educational Administration. Principal topics discussed are negotiating procedures, the role of the superintendent, teacher organization-school administrator relations, causes of teacher militancy, negotiation laws,…

  19. The nuclear collective motion

    International Nuclear Information System (INIS)

    Current developments in nuclear structure are discussed from a theoretical perspective. First, the progress in theoretical modeling of nuclei is reviewed. This is followed by the discussion of nuclear time scales, nuclear collective modes, and nuclear deformations. Some perspectives on nuclear structure research far from stability are given. Finally, interdisciplinary aspects of the nuclear many-body problem are outlined. (orig.)

  20. Collective excitations in nuclei

    Energy Technology Data Exchange (ETDEWEB)

    Chomaz, Ph

    1997-12-31

    The properties of the nucleus cannot be reduced to the properties of its constituents: it is a complex system. The fact that many properties of the nucleus are consequences of the existence of mean-field potential is a manifestation of this complexity. In particular the nucleons can thus self-organize in collective motions such as giant resonances. Therefore the study of these collective motions is a very good to understand the properties of the nucleus itself. The purpose of this article was to stress some aspects of these collective vibrations. In particular we have studied how an ensemble of fermions as the nucleus can self-organize in collective vibrations which are behaving like a gas of bosons in weak interaction. The understanding of these phenomena remains one of the important subjects of actually in the context of quantal systems in strong interaction. In particular the study of the states with one or two vibration quanta provides a direct information on the structure if nuclei close to their ground states. (author) 270 refs.

  1. Fully electric waste collection

    CERN Multimedia

    Anaïs Schaeffer

    2015-01-01

    Since 15 June, Transvoirie, which provides waste collection services throughout French-speaking Switzerland, has been using a fully electric lorry for its collections on the CERN site – a first for the region!   Featuring a motor powered by electric batteries that charge up when the brakes are used, the new lorry that roams the CERN site is as green as can be. And it’s not only the motor that’s electric: its waste compactor and lifting mechanism are also electrically powered*, making it the first 100% electric waste collection vehicle in French-speaking Switzerland. Considering that a total of 15.5 tonnes of household waste and paper/cardboard are collected each week from the Meyrin and Prévessin sites, the benefits for the environment are clear. This improvement comes as part of CERN’s contract with Transvoirie, which stipulates that the firm must propose ways of becoming more environmentally friendly (at no extra cost to CERN). *The was...

  2. Collective excitations in nuclei

    International Nuclear Information System (INIS)

    The properties of the nucleus cannot be reduced to the properties of its constituents: it is a complex system. The fact that many properties of the nucleus are consequences of the existence of mean-field potential is a manifestation of this complexity. In particular the nucleons can thus self-organize in collective motions such as giant resonances. Therefore the study of these collective motions is a very good to understand the properties of the nucleus itself. The purpose of this article was to stress some aspects of these collective vibrations. In particular we have studied how an ensemble of fermions as the nucleus can self-organize in collective vibrations which are behaving like a gas of bosons in weak interaction. The understanding of these phenomena remains one of the important subjects of actually in the context of quantal systems in strong interaction. In particular the study of the states with one or two vibration quanta provides a direct information on the structure if nuclei close to their ground states. (author)

  3. Genealogy Collection III.

    Science.gov (United States)

    Illinois Libraries, 1992

    1992-01-01

    Identified and discussed are little known Illinois collections of ethnic and religious records valuable for genealogical research. Holdings and sources are described as well as problems in researching specific ethnic or religious groups. European, African, and religious immigrants' records are highlighted. (EA)

  4. Materials and Collections

    Science.gov (United States)

    Hinseth, Lois

    1978-01-01

    This discussion of collection development considers (1) special problems as they relate to specific types of institutions--nursing, long term residential, psychiatric and developmental; (2) acquisition; (3) organization--classification, cataloging, and physical arrangement; (4) use--circulation, special methods, and the role of librarians; and (5)…

  5. Octupole collectivity in nuclei

    Science.gov (United States)

    Butler, P. A.

    2016-07-01

    The experimental and theoretical evidence for octupole collectivity in nuclei is reviewed. Recent theoretical advances, covering a wide spectrum from mean-field theory to algebraic and cluster approaches, are discussed. The status of experimental data on the behaviour of energy levels and electric dipole and electric octupole transition moments is reviewed. Finally, an outlook is given on future prospects for this field.

  6. Collective variables and dissipation

    International Nuclear Information System (INIS)

    This course is an introduction to some basic concepts of non-equilibrium statistical mechanics. We put stress on the relevant entropy associated to a set of collective variables, on the meaning of the projection method in Liouville space and its use to establish equations of motion for these variables, and on the interpretation of dissipation in the framework of information theory

  7. Collection for SOS animaux

    CERN Document Server

    2005-01-01

    The Pays de Gex animal shelter is collecting funds. There will be things to buy. You will be able to make a donation and/or become a member of the association or simply get information. SOS Animaux stall (Hall, Build. 60, next to restaurant 1) On Wednesday 23 November 2005 (from 9h - 17h non-stop)

  8. Long-Term Collections

    CERN Multimedia

    Comité des collectes à long terme

    2011-01-01

    It is the time of the year when our fireman colleagues go around the laboratory for their traditional calendars sale. A part of the money of the sales will be donated in favour of the long-term collections. We hope that you will welcome them warmly.

  9. Husserl on Collective Intentionality

    DEFF Research Database (Denmark)

    Szanto, Thomas

    Unlike Husserl’s theory of empathy and intersubjectivity, his theory of collective intentionality has hardly been studied. In this paper, I shall address this neglected but important aspect of his phenomenology. I will argue that Husserl’s contribution, on closer scrutiny, not only stands on an...

  10. Developing the Collection Graph

    NARCIS (Netherlands)

    Blanke, Tobias; Bryant, Michael; Speck, Reto

    2015-01-01

    Library Hi Tech, Volume 33, Issue 4, November 2015. Purpose In 2010 the European Holocaust Research Infrastructure (EHRI) was funded to support research into the Holocaust. The project follows on from significant efforts in the past to develop and record the collections of the Holocaust in several n

  11. Sample collection and documentation

    International Nuclear Information System (INIS)

    Beginning within a few weeks after the bombings and periodically during the intervening decades, investigators in Hiroshima and Nagasaki have collected samples of materials that were in the cities at the time of the bombings. Although some early efforts were not driven by specific measurement objectives, many others were. Even some of the very earliest samples collected in 1945 were based on carefully conceived research plans and detailed specifications for samples appropriate to particular retrospective measurements, i.e., of particular residual quantities remaining from exposure to the neutrons and gamma rays from the bombs. This chapter focuses mainly on the work of groups at two institutions that have actively collaborated since the 1980s in major collection efforts and have shared samples among themselves and with other investigators: the Radiation Effects Research Foundation (RERF) and its predecessor the Atomic Bomb Casualty Commission (ABCC), and Hiroshima University. In addition, a number of others are listed, who also contributed to the literature by their collection of samples. (J.P.N.)

  12. Collections Define Cataloging's Future

    Science.gov (United States)

    Simpson, Betsy

    2007-01-01

    The role of catalogers within academic libraries is evolving to meet new demands and cultivating a broader understanding of cataloging--one that focuses on collections, not the catalog, and applies cataloger expertise across metadata activities. Working collaboratively as never before, catalogers are reinventing their place within the library.

  13. RIF and Collective Bargaining.

    Science.gov (United States)

    Zirkel, Perry A.

    1994-01-01

    Focuses on the modern case-law intersection between state legislation for school districts that applies to reduction-in-force (RIF) and other state legislation that applies to collective bargaining. One conclusion is that the implementation of RIF is more likely to be negotiable and arbitrable than the reasons for RIF. (96 footnotes) (MLF)

  14. On a new species of the genus Testudo

    NARCIS (Netherlands)

    Lidth de Jeude, van Th.W.

    1893-01-01

    On arranging the tortoises of the genus Testudo in the collections of the Leyden Museum I met with a mounted specimen, collected at the Cape of Good Hope by the late Kuhl and van Hasselt, which though having much in common with Testudo geometrica L., yet in other points differs from that species and

  15. Molecular Identification of Fusarium Species in Gibberella fujikuroi Species Complex from Rice, Sugarcane and Maize from Peninsular Malaysia

    Directory of Open Access Journals (Sweden)

    Heng Mei Hsuan

    2011-10-01

    Full Text Available The objective of this study was to identify Fusarium species in the Gibberella fujikuroi species complex from rice, sugarcane and maize as most of the Fusarium species in the species complex are found on the three crops. Isolates used were collected from the field and obtained from culture collection. The Fusarium isolates were initially sorted based on morphology and identifications confirmed based on the DNA sequence of the translation elongation factor 1-α (TEF-1α gene. Based on the closest match of BLAST analysis, five species were recovered, namely, F. sacchari, F. fujikuroi, F. proliferatum, F. andiyazi and F. verticillioides. This is the first report regarding F. andiyazi from rice in Malaysia and Southeast Asia. The phylogenetic tree generated by using the neighbor joining method showed that isolates from the same species were grouped in the same clade. The present study indicated that Fusarium species in the G. fujikuroi species complex are widespread in rice, sugarcane and maize in Peninsular Malaysia. The findings also suggest that the use of morphological characters for identification of Fusarium species in the G. fujikuroi species complex from the three crops will lead to incorrect species designation.

  16. Threatened & Endangered Species Occurrences

    Data.gov (United States)

    Kansas Data Access and Support Center — The database consists of a single statewide coverage of location records for 54 species contained in the Kansas Natural Heritage Inventory database of the Kansas...

  17. How reticulated are species?

    Science.gov (United States)

    Mallet, James; Besansky, Nora; Hahn, Matthew W

    2016-02-01

    Many groups of closely related species have reticulate phylogenies. Recent genomic analyses are showing this in many insects and vertebrates, as well as in microbes and plants. In microbes, lateral gene transfer is the dominant process that spoils strictly tree-like phylogenies, but in multicellular eukaryotes hybridization and introgression among related species is probably more important. Because many species, including the ancestors of ancient major lineages, seem to evolve rapidly in adaptive radiations, some sexual compatibility may exist among them. Introgression and reticulation can thereby affect all parts of the tree of life, not just the recent species at the tips. Our understanding of adaptive evolution, speciation, phylogenetics, and comparative biology must adapt to these mostly recent findings. Introgression has important practical implications as well, not least for the management of genetically modified organisms in pest and disease control. PMID:26709836

  18. Communication on invasive species

    OpenAIRE

    2014-01-01

    Like any other environmental problem, control of invasive species needs to be based on awareness of the implications by the public and by private enterprise. Active, informed public support is a major factor for success in managing a pest crisis; regulations and coercive measures alone do not succeed. Which raises the question of what to communicate, and how. There may be conflicts of interest where alien species are concerned because some of them are a source of income, pleasure or even a st...

  19. Genetic assessment of ornamental fish species from North East India.

    Science.gov (United States)

    Dhar, Bishal; Ghosh, Sankar Kumar

    2015-01-25

    Ornamental fishes are traded with multiple names from various parts around the world, including North East India. Most are collected from the wild, due to lack of species-specific culture or breeding, and therefore, such unmanaged collection of the wild and endemic species could lead to severe threats to biodiversity. Despite many regulatory policies, trade of threatened species, including the IUCN listed species have been largely uncontrolled, due to species identification problems arising from the utilization of multiple trade names. So, the development of species-specific DNA marker is indispensable where DNA Barcoding is proved to be helpful in species identification. Here, we investigated, through DNA Barcoding and morphological assessment, the identification of 128 ornamental fish specimens exported from NE India from different exporters. The generated sequences were subjected to similarity match in BOLD-IDS as well as BLASTN, and analysed using MEGA5.2 for species identification through Neighbour-Joining (NJ) clustering, and K2P distance based approach. The analysis revealed straightforward identification of 84 specimens into 35 species, while 44 specimens were difficult to distinguish based on CO1 barcode alone. However, these cases were resolved through morphology, NJ and distanced based method and found to be belonging to 16 species. Among the 51 identified species, 14 species represented multiple trade names; 17 species belonged to threatened category. Species-level identification through DNA Barcoding along with traditional morphotaxonomy reflects its efficacy in regulating ornamental fish trade and therefore, appeals for their conservation in nature. The use of trade names rather than the zoological name created the passage for trafficking of the threatened species and demands immediate attention for sustaining wildlife conservation. PMID:25447914

  20. Percent Stomach Emptiness in Fish Collections: Sources of Variation and Study Design Implications

    Science.gov (United States)

    We summarized fish stomach content data from 369,000 fish from 402 species in 1,096 collections made between 1925 and 2009 and report on the percentage of individuals with empty stomachs (PES). The mean PES among all species, locations, habitats, dates, and collection methods was...

  1. On a collection of bats (Chiroptera) from Kikwit, Democratic Republic of the Congo

    DEFF Research Database (Denmark)

    van Cakenberghe, V.; de Vree, F.; Leirs, Herwig

    1999-01-01

    The collection of vertebrates made in Kikwit in the aftermath of the 1995 Ebola haemorrhagic fever epidemic included 538 bat specimens, representing 18 species. This collection contains large numbers of a very common species, Chaerephon pumila, but also of Chaerephon ansorgei, which was not yet...

  2. Collecting Passion with a Purpose.

    Science.gov (United States)

    Vandergrift, Kay E.

    1986-01-01

    Explores collecting of children's books and discusses the motivations of collectors, various levels of collecting, bibliographic tools, sources of books, collection patterns, facsimiles, and cataloging. Lists of selected bibliographic tools and selected rare book dealers are included. (EM)

  3. Collective academic supervision

    DEFF Research Database (Denmark)

    Nordentoft, Helle Merete; Thomsen, Rie; Wichmann-Hansen, Gitte

    2013-01-01

    Supervision of students is a core activity in higher education. Previous research on student supervision in higher education focus on individual and relational aspects in the supervisory relationship rather than collective, pedagogical and methodical aspects of the planning of the supervision...... process. This article fills these gaps by discussing potentials and challenges in “Collective Academic Supervision”, a model for supervision at the Master of Education in Guidance at Aarhus University in Denmark. The pedagogical rationale behind the model is that students’ participation and learning are...... to peers. In sum CAS provides a practice in which a group of students and their supervisor learn by working together. Potentials for future research is to investigate the ways in which participants – both students and teachers - can be prepared for different modes of participation and, finally, how...

  4. Collective network routing

    Science.gov (United States)

    Hoenicke, Dirk

    2014-12-02

    Disclosed are a unified method and apparatus to classify, route, and process injected data packets into a network so as to belong to a plurality of logical networks, each implementing a specific flow of data on top of a common physical network. The method allows to locally identify collectives of packets for local processing, such as the computation of the sum, difference, maximum, minimum, or other logical operations among the identified packet collective. Packets are injected together with a class-attribute and an opcode attribute. Network routers, employing the described method, use the packet attributes to look-up the class-specific route information from a local route table, which contains the local incoming and outgoing directions as part of the specifically implemented global data flow of the particular virtual network.

  5. Species Composition and Relative Abundance of Mosquitoes in Swat, Pakistan

    Directory of Open Access Journals (Sweden)

    Ikram Ilahi

    2013-04-01

    Full Text Available A comprehensive survey of mosquitoes (Diptera: Culicidae was conducted in Swat Pakistan, from April to September during 2000. The survey involved the sampling of both, adult and immature stages of mosquitoes, and recovered a total of 21 species in five genera. Sampling of adult mosquitoes involved Pyrethrum spray collections, Man-biting collections, and Animal-biting collection. Immature stages of mosquitoes were collected from variety of habitats including springs, irrigation channels, rice fields, marshes, temporary pools, construction pools, agriculture pools, river margins, ditches, waste water drains, wells and tree holes. During the study most of the species built up their populations in June, July and August, while a few increased their populations in September. During the survey of immature stages, from a total of 138 samples taken, Cx. quinquefasciatus showed maximum frequency of occurrence (recovered from 48 samples followed by An. maculatus (17 samples, Cx. pseudovishnui (14 samples, An. annularis and An. stephensi (13 samples each, Cx. bitaeniorhynchus (11 samples, An. splendidus (5 samples and Cx. theileri (4 samples. The rest of the species occurred infrequently. The observations on habitat specificity of different species of mosquitoes showed the rice fields as the most favorable site for mosquito breeding (harboring 12 species followed by river margins (five species and temporary pools and springs (four species each. During this study Ae. aegypti was recovered from tyres in Mingora; it was not reported earlier from Swat.

  6. Inducible Clindamycin Resistance in Staphylococcus Species

    International Nuclear Information System (INIS)

    Objective: To determine the frequency of inducible clindamycin resistance in clinical isolates of Staphylococcus species by phenotypic D-test. Study Design: Observational study. Place and Duration of Study: Ziauddin University Hospital, Karachi, from July to December 2011. Methodology: Consecutive clinical isolates of Staphylococcus species were collected and identified by conventional microbiological techniques. Antimicrobial susceptibility testing and inducible clindamycin resistance was carried out by performing D-test using CLSI criteria. Methicillin resistance was detected by using Cefoxitin disk as a surrogate marker. Statistical analysis was performed by SPSS version-17. Results: A total of 667 clinical isolates of Staphylococcus species were obtained during the study period. In these isolates, 177 (26.5%) were Staphylococcus aureus, and 490 (73.5%) were coagulase negative Staphylococci. The total frequency of inducible clindamycin resistance among isolates of Staphylococcus species was 120/667 (18%). Frequency of inducible clindamycin resistance among coagulase negative Staphylococci group and Staphylococcus aureus group were 18.57% and 16.38% respectively. Median age of patients in D-test positive group was 19.5 (1 - 54) years. Conclusion: The frequency of inducible clindamycin resistance among Staphylococcus species may differ in different hospital setup. Clinical microbiology laboratories should implement testing simple and effective D-test on all Staphylococcus species. D-test positive isolates should be reported clindamycin resistant to decrease treatment failure. (author)

  7. Algebraic nonlinear collective motion

    OpenAIRE

    Troupe, J.; Rosensteel, G.

    1999-01-01

    Finite-dimensional Lie algebras of vector fields determine geometrical collective models in quantum and classical physics. Every set of vector fields on Euclidean space that generates the Lie algebra sl(3, R) and contains the angular momentum algebra so(3) is determined. The subset of divergence-free sl(3, R) vector fields is proven to be indexed by a real number $\\Lambda$. The $\\Lambda=0$ solution is the linear representation that corresponds to the Riemann ellipsoidal model. The nonlinear g...

  8. Collection Management for IDEAL

    OpenAIRE

    Ma, Yufeng; Nan, Dong

    2016-01-01

    This submission describes the work of the Collection Management team as part of the IDEAL project with the main goal of designing and developing a distributed search engine. It includes the project term reports, final presentation slides, as well as source code and dataset developed. The main responsibility of our team was to do incremental update from MySQL database to HBase, conduct noise reduction on raw tweets and webpages, and finally perform named entity recognition on cleaned data.

  9. ASUKA Hydrographic Data Collection

    OpenAIRE

    Uchida, Hiroshi; Imawaki, Shiro; Ichikawa, Hiroshi

    2008-01-01

    Repeated hydrographic surveys across the Kuroshio and its recirculation south of Japan were carried out by a group called ASUKA (Affiliated Surveys of the Kuroshio off Cape Ashizuri) since 1992, Conductivity-temperature-depth profiler (CTD), expendable CTD (XCTD), expendable bathythermograph (XBT), and digital bathythermograph (DBT) data obtained from 155 cruises were collected for a period of 16 years, from November 1992 to May 2008. A uniform data processing was applied to raw data from the...

  10. Innovation and Collective Entrepreneurship

    OpenAIRE

    Spear, Roger

    2012-01-01

    This paper examines different forms of innovation including social innovation, and why innovation and social innovation have become important themes in public policy in a context of the increasing and diverse demands on welfare regimes, and in an era of constrained budgets. It will review different perspectives on innovation and social innovation and the dynamic interaction through collective entrepreneurship in the social and solidarity economy; bringing out process and outcome dimensions of...

  11. Digital collections and exhibits

    CERN Document Server

    Denzer, Juan

    2015-01-01

    Today's libraries are taking advantage of cutting-edge technologies such as flat panel displays using touch, sound, and hands-free motions to design amazing exhibits using everything from simple computer hardware to advanced technologies such as the Microsoft Kinect. Libraries of all types are striving to add new interactive experiences for their patrons through exciting digital exhibits, both online and off. Digital Collections and Exhibits takes away the mystery of designing stunning digital exhibits to spotlight library trea

  12. Learning and knowing collectively

    International Nuclear Information System (INIS)

    Scholars from multiple epistemic communities using a variety of models and approaches are working together to understand climate change, biodiversity loss, and other large-scale phenomena stemming from how people interact with the environment. No single model is adequate, no single mind can grasp the multiple models and their numerous implications. Yet collectively, scientists are putting the parts together and reaching a shared understanding. How is this happening, how can it be done better, and what are the implications for ecological economics?

  13. Ferroelectricity the fundamentals collection

    CERN Document Server

    Jimenez, Basilio

    2008-01-01

    This indispensable collection of seminal papers on ferroelectricity provides an overview over almost a hundred years of basic and applied research. Containing historic contributions from renowned authors, this book presents developments in an area of science that is still rapidly growing. Although primarily aimed at scientists and academics involved in research, this will also be of use to students as well as newcomers to the field.

  14. Curating Virtual Data Collections

    Science.gov (United States)

    Lynnes, C.; Ramapriyan, H.; Leon, A.; Tsontos, V. M.; Liu, Z.; Shie, C. L.

    2015-12-01

    NASA's Earth Observing System Data and Information System (EOSDIS) contains a rich set of datasets and related services throughout its many elements. As a result, locating all the EOSDIS data and related resources relevant to particular science theme can be daunting. This is largely because EOSDIS data's organizing principle is affected more by the way they are produced than around the expected end use.Virtual collections oriented around science themes can overcome this by presenting collections of data and related resources that are organized around the user's interest, not around the way the data were produced. Science themes can be: Specific applications (uses) of the data, e.g., landslide prediction Geophysical events (e.g., Hurricane Sandy) A specific science research problem Virtual collections consist of annotated web addresses (URLs) that point to data and related resource addresses, thus avoiding the need to copy all of the relevant data to a single place. These URL addresses can be consumed by a variety of clients, ranging from basic URL downloaders (wget, curl) and web browsers to sophisticated data analysis programs such as the Integrated Data Viewer. Eligible resources include anything accessible via URL: data files: data file URLs data subsets: OPeNDAP, webification or Web Coverage Service URLs data visualizations: Web Map Service data search results: OpenSearch Atom response custom analysis workflows: e.g., Giovanni analysis URL

  15. The generalized collective model

    International Nuclear Information System (INIS)

    In this thesis a new way of proceeding, basing on the method of the finite elements, for the solution of the collective Schroedinger equation in the framework of the Generalized Collective Model was presented. The numerically reachable accuracy was illustrated by the comparison to analytically known solutions by means of numerous examples. Furthermore the potential-energy surfaces of the 182-196Hg, 242-248Cm, and 242-246Pu isotopes were determined by the fitting of the parameters of the Gneuss-Greiner potential to the experimental data. In the Hg isotopes a shape consistency of nearly spherical and oblate deformations is shown, while the Cm and Pu isotopes possess an essentially equal remaining prolate deformation. By means of the pseudo-symplectic model the potential-energy surfaces of 24Mg, 190Pt, and 238U were microscopically calculated. Using a deformation-independent kinetic energy so the collective excitation spectra and the electrical properties (B(E2), B(E4) values, quadrupole moments) of these nuclei were calculated and compared with the experiment. Finally an analytic relation between the (gR-Z/A) value and the quadrupole moment was derived. The study of the experimental data of the 166-170Er isotopes shows an in the framework of the measurement accuracy a sufficient agreement with this relation. Furthermore it is by this relation possible to determine the effective magnetic dipole moment parameter-freely. (orig./HSI)

  16. Habitats and Species Covered by the EEC Habitats Directive

    DEFF Research Database (Denmark)

    Pihl, S.; Søgaard, B.; Ejrnæs, R.;

    of species In the Habitats Directive, the conservation status of a species is defined in terms of all the influences acting upon the species, which may affect the long-term distribution and abundance of its populations. Such an assessment requires systematically and continuously collected data in order....... The background data for the 79 species assessed in this report are therefore only considered to be satisfactory for 30 species whereas the data on the remaining 49 species were insufficient to enable an adequate assessment of their status and abundance. In these circumstances and based on the data on the total...... of Conservation (SAC's), Natura 2000. The designations are based upon the presence of 60 of the natural habitat types listed in Annex I of the Directive and approx. 44 of the species listed in Annex II which occur within the territory of Denmark and for the conservation of which the Community has a special...

  17. EXOTIC SPECIES OF SOCOTRA ISLAND, YEMEN: A FIRST CONTRIBUTION

    Directory of Open Access Journals (Sweden)

    N. TALEB

    2010-01-01

    Full Text Available A first inventory of the exotic species of Socotra has been compiled on the basis of the published literature and original distribution data collected by field surveys from 2006 to 2008. A strictly geographical and conservative approach was adopted including only cultivated species and those with a native range separated from Socotra territory. The extracted aliens (87 taxa, 68 genera, 40 family represent approximately 9% of the total flora of the region (850 taxa. Most were introduced in the past 10 to 20 years. Agricultural cultivated or crop species dominated with 38 species (43.7%, fruit followed by basing 14 species (16.1% and ruder or ornamental species (35 species, 40.2%.

  18. PHEMERANTHUS CONFERTIFLORUS: NEW ALIEN SPECIES TO EUROPE

    OpenAIRE

    NAGODĂ Eugenia; COMĂNESCU Petronela; ANASTASIU Paulina

    2013-01-01

    Phemeranthus confertiflorus (Montiaceae) is reported as a new alien species to Europe. It is native to North America and used as decorative in rock gardens. The specimens of this plant were collected in Bucharest (Romania) and deposited in BUC. The mode of introduction of the plant is unknown, most likely escaped from cultivation. Data about habitat and population of the taxon are presented. One of the plants that accompany Phemeranthus confertiflorus is also an alien to Europe – Portulaca pi...

  19. Recurrent habitat disturbance and species diversity in a multiple-competitive species system.

    Science.gov (United States)

    Ohsawa, Kyoko; Kawasaki, Kohkichi; Takasu, Fugo; Shigesada, Nanako

    2002-05-21

    To address how species interactions, dispersal and environmental disturbances interplay to affect the spatial distribution and diversity of species, we present a compartment model in which multiple species undergo competitive interaction of Lotka-Volterra type in a patchy environment arranged in a square lattice. Dispersal of species occurs between adjacent patches. Disturbances are periodically imposed on a central part of the environment in a belt-like block or an island-like block of various sizes where each species is killed for a certain time interval and then allowed to recover for the rest of a disturbance cycle. We deal with a case in which the local population dynamics within each patch is analytically determinable and has multiple locally stable equilibrium states in the absence of environmental disturbance. We further assume a trade-off between the reproductive rate of species and its dispersal ability. With these settings, we numerically examine how the spatio-temporal distributions of species are affected by changes in the pattern, size and duration of disturbances. The results demonstrate that: (1) in the undisturbed area, environmental disturbances could generate spatially segregated distributions of species; (2) in the disturbed area, species with higher dispersal abilities quickly invade and preferentially recover their population during the post-disturbance period, being temporarily relieved of competition from other species. These mechanisms collectively lead to increased species diversity in the whole habitat, functioning best when both the size and duration of disturbances are intermediate. In particular, the belt-like disturbance is more effective than the island-like disturbance in sustaining spatial heterogeneity for a wider range of duration of disturbance. PMID:12079366

  20. Assessment of weed species composition and species diversity in some fruit orchards

    Directory of Open Access Journals (Sweden)

    Patience Olorunmaiye

    2013-05-01

    Full Text Available Fruits are often perennial crops and therefore can be invaded by weeds at many different times of the year because of their varied life-cycle. Thus a weed survey was conducted in some fruit orchards containing guava/soursop, mango, irvingia and plantain/banana at the National Horticultural Research Institute (NIHORT Ibadan in 2009 cropping season to determine weed species composition and species diversity. Weeds were sampled from each fruit orchard with a 0.5m × 0.5m wooden quadrat, identified to species level, counted and recorded. Data collected were used to calculate relative frequency, relative density and importance relative value for each species. Result shows that 45 weed species were encountered in all the fruit orchards and mango orchard had the highest species diversity (33 species while the least was recorded in guava/soursop orchard (10 species. All these 10 species had their relative frequencies > 5% out of which Ageratum conyzoides > Panicum maximum > Cyperus esculentus > Chromolaena odorata > Commelina erecta are of ecological importance. Three weed species: Ageratum conyzoides, Centrosema pubescens and Panicum maximum associated with all the fruit orchards in all the locations and T. procumbens was the most abundant and most dominant species in guava/soursop, irvingia and plantain/banana orchards while Echinocloa phyllopogon followed the same trend in mango orchard. These weeds are low-growing plants and regular weeding before seed formation will help to reduce their abundance in these orchards so that they do not interfere with harvesting of these fruits.

  1. CURRENT STATE OF THE COLLECTION OF MEDICINAL PLANTS OF THE YAKUTSK BOTANICAL GARDEN

    Directory of Open Access Journals (Sweden)

    Semenova V. V.

    2016-02-01

    Full Text Available The article considers data on the stocktaking of plants in the collection of medicinal plants of the Yakut Botanical Garden on the following parameters: the study of the component composition, the inclusion in the Pharmacopoeia articles and the Russian State Register of medicinal products. Introduction test in the collection has been performed for 158 species from 99 genera and 41 families, currently the collection has 101 species from 79 genera and 34 families. Chemical composition of plants is known for 61 species. 17 species are pharmacopoeal and 15 species make medicinal products available. The rest of the medicinal plants can be used in folk medicine. Most represented are Asteraceae family (25, Ranunculaceae (20, Rosaceae (16, Fabaceae (15, Lamiaceae (13, among tested plants. According to the assessment of introduction capabilities, 49 species in the collection are highly stable, 51 - stable and just one is unstable

  2. Theoretical ecology without species

    Science.gov (United States)

    Tikhonov, Mikhail

    The sequencing-driven revolution in microbial ecology demonstrated that discrete ``species'' are an inadequate description of the vast majority of life on our planet. Developing a novel theoretical language that, unlike classical ecology, would not require postulating the existence of species, is a challenge of tremendous medical and environmental significance, and an exciting direction for theoretical physics. Here, it is proposed that community dynamics can be described in a naturally hierarchical way in terms of population fluctuation eigenmodes. The approach is applied to a simple model of division of labor in a multi-species community. In one regime, effective species with a core and accessory genome are shown to naturally appear as emergent concepts. However, the same model allows a transition into a regime where the species formalism becomes inadequate, but the eigenmode description remains well-defined. Treating a community as a black box that expresses enzymes in response to resources reveals mathematically exact parallels between a community and a single coherent organism with its own fitness function. This coherence is a generic consequence of division of labor, requires no cooperative interactions, and can be expected to be widespread in microbial ecosystems. Harvard Center of Mathematical Sciences and Applications;John A. Paulson School of Engineering and Applied Sciences.

  3. Marine macrophytes : Macroalgae species and life forms from Golden Beach, Similajau National Park, Bintulu, Sarawak, Malaysia

    OpenAIRE

    Muta Harah, Zakaria; Japar Sidik, Bujang; Raesah, Amit; Suzalina Akma, Awing; Ogawa, Hisao

    2006-01-01

    A study on macroalgae was carried out around Golden Beach, Similajau National Park during the month of April 2005. Collections and recordings of macroalgae species and life forms were conducted during low tide period. A total of 35 macroalgae were identified belonging to 27 genera comprising of 10 species (28.6%) Chlorophyta, 6 species (17.1%) Phaeophyta and 19 species (54.3%) Rhodophyta. Sargassum paniculatum, the common species inhabited the sand and rock substrates. Entero-morpha intestina...

  4. Mechanosensory interactions drive collective behaviour in Drosophila.

    Science.gov (United States)

    Ramdya, Pavan; Lichocki, Pawel; Cruchet, Steeve; Frisch, Lukas; Tse, Winnie; Floreano, Dario; Benton, Richard

    2015-03-12

    Collective behaviour enhances environmental sensing and decision-making in groups of animals. Experimental and theoretical investigations of schooling fish, flocking birds and human crowds have demonstrated that simple interactions between individuals can explain emergent group dynamics. These findings indicate the existence of neural circuits that support distributed behaviours, but the molecular and cellular identities of relevant sensory pathways are unknown. Here we show that Drosophila melanogaster exhibits collective responses to an aversive odour: individual flies weakly avoid the stimulus, but groups show enhanced escape reactions. Using high-resolution behavioural tracking, computational simulations, genetic perturbations, neural silencing and optogenetic activation we demonstrate that this collective odour avoidance arises from cascades of appendage touch interactions between pairs of flies. Inter-fly touch sensing and collective behaviour require the activity of distal leg mechanosensory sensilla neurons and the mechanosensory channel NOMPC. Remarkably, through these inter-fly encounters, wild-type flies can elicit avoidance behaviour in mutant animals that cannot sense the odour--a basic form of communication. Our data highlight the unexpected importance of social context in the sensory responses of a solitary species and open the door to a neural-circuit-level understanding of collective behaviour in animal groups. PMID:25533959

  5. Concepts of keystone species and species importance in ecology

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    This paper discussed the keystone species concept and introduced the typical characteristics of keystone species and their identification in communities or ecosystems. Based on the research of the keystone species, the concept of species importance (SI) was first advanced in this paper. The species importance can be simply understood as the important value of species in the ecosystem, which consists of three indexes: species structural important value (SIV), functional important value (FIV) and dynamical important value (DIV). With the indexes, the evaluation was also made on species importance of arbor trees in the Three-Hardwood forests (Fraxinus mandshurica, Juglans mandshurica, and Phellodendron amurense) ecosystem.

  6. WHITE BLISTER SPECIES (Albuginaceae ON WEEDS

    Directory of Open Access Journals (Sweden)

    Karolina Vrandečić

    2011-06-01

    Full Text Available The obligate fungi inside the family Albuginaceae are widespread world wide and cause white rust or white blister disease. Mycopopulation of weeds has been researched within the project „The role of weeds in epidemiology of row-crop diseases“. The aim of this research was to identify white blister species occurring on weeds in Eastern Croatia. Weed plants with disease symptoms characteristic for white blister species have been collected since 2001 on location Slavonia and Baranja country. Determination of white blister species was based on morphological characters of pathogen and the host. Wilsoniana bliti was determined on Amaranthus retroflexus and Amaranthus hybridus leaves. Capsella bursa pastoris is a host for Albugo candida. Ambrosia artemisiifolia is a host for Pustula sp. and Cirsium arvense was found to be host for Pustula spinulosa. Wilsoniana portulaceae was determined on Portulaca oleracea.

  7. Genomic definition of species

    Energy Technology Data Exchange (ETDEWEB)

    Crkvenjakov, R.; Drmanac, R.

    1991-07-01

    The subject of this paper is the definition of species based on the assumption that genome is the fundamental level for the origin and maintenance of biological diversity. For this view to be logically consistent it is necessary to assume the existence and operation of the new law which we call genome law. For this reason the genome law is included in the explanation of species phenomenon presented here even if its precise formulation and elaboration are left for the future. The intellectual underpinnings of this definition can be traced to Goldschmidt. We wish to explore some philosophical aspects of the definition of species in terms of the genome. The point of proposing the definition on these grounds is that any real advance in evolutionary theory has to be correct in both its philosophy and its science.

  8. Transvalued species in an African forest.

    Science.gov (United States)

    Remis, Melissa J; Hardin, Rebecca

    2009-12-01

    We combined ethnographic investigations with repeated ecological transect surveys in the Dzanga-Sangha Dense Forest Reserve (RDS), Central African Republic, to elucidate consequences of intensifying mixed use of forests. We devised a framework for transvaluation of wildlife species, which means the valuing of species on the basis of their ecological, economic, and symbolic roles in human lives. We measured responses to hunting, tourism, and conservation of two transvalued species in RDS: elephants (Loxodonta cyclotis) and gorillas (Gorilla gorilla). Our methods included collecting data on encounter rates and habitat use on line transects. We recorded cross-cultural variation in ideas about and interactions with these species during participant observation of hunting and tourism encounters and ethnographic interviews with hunters, conservation staff, researchers, and tourists. Ecologically, gorillas used human-modified landscapes successfully, and elephants were more vulnerable than gorillas to hunting. Economically, tourism and encounters with elephants and gorillas generated revenues and other benefits for local participants. Symbolically, transvaluation of species seemed to undergird competing institutions of forest management that could prove unsustainable. Nevertheless, transvaluation may also offer alternatives to existing social hierarchies, thereby integrating local and transnational support for conservation measures. The study of transvaluation requires attention to transnational flows of ideas and resources because they influence transspecies interactions. Cross-disciplinary in nature, transvalution of species addresses the political and economic challenges to conservation because it recognizes the varied human communities that shape the survival of wildlife in a given site. Transvaluation of species could foster more socially inclusive management and monitoring approaches attuned to competing economic demands, specific species behaviors, and human

  9. The Distrbution of Various Mercury Species in Soil

    Institute of Scientific and Technical Information of China (English)

    冯新斌; 陈业材; 等

    1997-01-01

    According to the mercury species with different solubilities,the analytical procedure involving sequential chemical extraction has been applied to partitioning the mercury species in soils into seven fractions.Soil samples collected from five localities in different areas (the high-mercury ares.the man-made mercury-polluted area and the reference area)were an alyzed for the seven mercury species.It is found that high mercury contents of soils can be attributed to both man-made pollution and geological processes,but the two kinds of solis show obvious differences in the distribution of their mercury species.

  10. Histomorphometric comparison of the human, swine, and ovine collecting systems.

    Science.gov (United States)

    Simões, Michele; de Souza, Diogo B; Gallo, Carla B M; Pereira-Sampaio, Marco A; Costa, Waldemar S; Sampaio, Francisco J

    2016-07-01

    The ovine kidney has been recently determined to be a better model than the swine kidney for the study of collecting system healing after partial nephrectomy. However, there is no histological study comparing the collecting systems of these species. To compare human, swine, and ovine collecting systems using histomorphometry. The collecting systems of 10 kidneys from each species (human, swine, and ovine) were processed for histomorphometry. The thickness of the three layers (mucosal connective tissue, submucosal muscular, and adventitial connective tissue) were measured. The densities of smooth muscle fibers, elastic system fibers, and cells were also measured. Additionally, blood vessel density in the adventitial connective tissue was measured. Analysis of the collecting systems from the three species presented several differences. The adventitial connective tissue from the swine samples was thicker, with more blood vessels and smooth muscle fibers, compared with that from the human and ovine samples. Swine also had higher density of elastic fibers on the submucosal muscular layer. Ovine and human collecting systems shared several similar features, such as blood vessel and elastic fiber density in all layers and the density of cellular and muscular fibers in the submucosal muscular and adventitial connective tissue layers. The collecting system of the ovine kidney is more similar to that of the human kidney compared with that of the swine kidney. This may explain the differences between the healing mechanisms in swine and those in humans and sheep after partial nephrectomy. Anat Rec, 299:967-972, 2016. © 2016 Wiley Periodicals, Inc. PMID:27111677

  11. Lignans from Arnica species.

    Science.gov (United States)

    Schmidt, Thomas J; Stausberg, Sabine; Raison, Jeanette Von; Berner, Matthias; Willuhn, Günter

    2006-05-10

    From four Arnica species (A. angustifolia Vahl ssp. attenuata (Greene) Maguire, A. lonchophylla Greene ssp. lonchophylla Maguire (flowerheads), A. chamissonis Less. ssp. foliosa (Nutt.) Maguire, A. montana L. (roots and rhizomes)) a total of twelve lignans of the furofuran-, dibenzylbutyrolactone- and dibenzylbutyrolactol-type were isolated. No report on lignans as constituents of Arnica species exists so far. Besides the known pinoresinol, epipinoresinol, phillygenin, matairesinol, nortrachelogenin and nortracheloside, six dibenzylbutyrolactol derivatives with different stereochemistry and substitution at C-9 were isolated and their structures elucidated by NMR spectroscopic and mass spectral analysis. PMID:16644542

  12. Collective behavior of dislocations

    International Nuclear Information System (INIS)

    Deformation of a crystal involves the motion of dislocations. Since dislocations interact, a short range and at long range, it is basic to understanding plasticity to establish if dislocations move singly or collectively. If deformation involves the collective motion of dislocations how does it manifest itself or equivalently how can it be measured? While a variety of techniques measure the positions of single dislocations before and after a stress is applied to a crystal, giving an average dislocation velocity, these techniques do not related directly to what happens during deformation, that is the collective behavior of dislocations. The mobile dislocation density is measured as follows: Lead-10% indium crystals are deformed at 4.2K, while in a magnetic field in the range Hc1 c2 where Hc1 is the lower critical field, H the applied field and Hc2 the upper critical field. During deformation changes n the flux are observed; the changes in flux are proportional to the mobile dislocation density. These changes in flux show the following characteristics: When the deformation process changes from elastic to plastic deformation there is a pronounced increase in flux noise, well above the background noise level. In addition superposed on this noise are pronounced bursts of magnetic flux, corresponding to dislocation bursts or avalanches of dislocations. A number of checks establish that these pulses are solely related to dislocations. These include the fact that they are not reproducible in terms of time from test to test, ruling out systematic instabilities in the circuit. Also, they occur when the crystal is unloaded and then reloaded at times, after plasticity is reinitiated, which are inconsistent with any time constant of the circuit. Finally, the measuring circuit shows no instabilities or ringing in this frequency range

  13. The functional biogeography of species

    DEFF Research Database (Denmark)

    Carstensen, D.W.; Dalsgaard, B.; Svenning, J.-C.; Rahbek, C.; Fjeldså, J.; Sutherland, W.J.; Olesen, Jens M.

    2013-01-01

    between species traits and large-scale species distribution patterns in archipelagos, we use a network approach to classify birds as one of four biogeographical species roles: peripherals, connectors, module hubs, and network hubs. These roles are based upon the position of species within the modular...... distributions at the local community level. We finally discuss how our biogeographical species roles may correspond to the stages of the taxon cycle and other prominent theories of species assembly. © 2013 The Authors....

  14. LONG TERM COLLECTIONS

    CERN Multimedia

    2004-01-01

    The Committee would like to thank all those, from near and far, who kindly gave donations to the collection organized at the time of the sudden death of our friend and colleague Stephen O'NEALE The sum of 3,615 francs will be sent to the INEPE Association for the education of children in Quito, Ecuador. We are deeply grateful for this gesture from Steve's family and hope that they find comfort in knowing that Steve's memory will live on through the children whose daily lives will be improved by this gift.

  15. Collection of CASIM calculations

    International Nuclear Information System (INIS)

    Monte Carlo calculations of hadronic cascades at Fermilab have usually been done using the code CASIM written by A. Van Ginneken. These calculations are often performed to determine the quantity of shielding required for radiation protection purposes. A number of examples of such calculations have been presented previously. Several years of practical experience have led the author to develop the collection of additional cases included in the present report. These results along with those given earlier will serve as a useful reference. No attempt was made here to consider all possibilities; rather, the purpose was to develop a useful set of examples. Exceptionally intricate cases should, of course, receive individualized attention as appropriate

  16. Collection for Philippines

    CERN Multimedia

    Staff Association

    2015-01-01

    Following the devastating Typhoon Haiyan that hit the Philippines in autumn 2013, a collection of funds to help the victims was organised at CERN. An amount of 16 950 CHF had been contributed and was forwarded to Caritas Switzerland. Tuesday 14 July, we received a message from Caritas in order to thank all the contributors for their generosity and to share with you their project’s progress and the results obtained so far. You can find the report on our website: http://staff-association.web.cern.ch/sites/staff-association.web.cern.ch/files/Docs/Rapport_Philippines.pdf

  17. Collection of particles

    International Nuclear Information System (INIS)

    Apparatus and a method for collecting particles formed by vaporisation during a high temperature treatment of steel (eg cutting or welding) are described in which gas is drawn from the area in which the treatment is taking place through a collector in which the particles are separated magnetically. The air may be drawn by an air ejector from a hood around the treatment area. The invention has particular application where the high temperature treatment is the laser cutting of the stainless steel wrapper around a nuclear fuel sub-assembly. (author)

  18. Adsorption and collective paramagnetism

    CERN Document Server

    Selwood, Pierce W

    1962-01-01

    Adsorption and Collective Paramagnetism describes a novel method for studying chemisorption. The method is based on the change in the number of unpaired electrons in the adsorbent as chemisorption occurs. The method is applicable to almost all adsorbates, but it is restricted to ferromagnetic adsorbents such as nickel, which may be obtained in the form of very small particles, that is to say, to ferromagnetic adsorbents with a high specific surface. While almost all the data used illustratively have been published elsewhere this is the first complete review of the subject. The book is addresse

  19. Collective space and urbanity

    DEFF Research Database (Denmark)

    Kajita, Masashi

    2015-01-01

    of evolving urbanity. The focus is on the essential and iconic collective space of the building 8TALLET- ramps and open stairs. How could space beyond private domain contribute to nurture social interactions among the residents but also enhance their relations to urban environments, while protecting...... the privacy of individual households? Envisaging potential functions and uses of the shared access route, this paper discusses the importance of continuous reflections of two perspectives: 1) architects’ logic (opportunistic attempt) of space making and 2) residents’ consideration and appropriation of spaces....

  20. Collection for Refugiees

    CERN Multimedia

    Staff Association

    2015-01-01

    You are wonderful, thank you! In response to the refugee and migration crisis, we organised a collection in October and November which called on your generosity. We are now pleased to announce that the amount raised is CHF 14'710. These funds will be forwarded to the International Federation of Red Cross and Red Crescent Societies to respond to the humanitarian needs of the refugees and migrants, providing immediate and longer-term relief, including emergency medical care and basic health services, psychological support, temporary shelter, distribution of food & water and other urgently needed items. We thank everyone who contributed to this important cause.

  1. 75 FR 68956 - Debt Collection

    Science.gov (United States)

    2010-11-10

    ... collection procedures. The interim final rule includes procedures for collection of debts through salary... regulations are to protect the minimum due process rights that must be afforded to a debtor when an agency... be referred to debt collection centers for collection. \\7\\ 31 CFR chapter IX. 2. Subpart B,...

  2. Behavioral Ecology of Captive Species: Using Bibliographic Information to Assess Pet Suitability of Mammal Species.

    Science.gov (United States)

    Koene, Paul; de Mol, Rudi M; Ipema, Bert

    2016-01-01

    Which mammal species are suitable to be kept as pet? For answering this question many factors have to be considered. Animals have many adaptations to their natural environment in which they have evolved that may cause adaptation problems and/or risks in captivity. Problems may be visible in behavior, welfare, health, and/or human-animal interaction, resulting, for example, in stereotypies, disease, and fear. A framework is developed in which bibliographic information of mammal species from the wild and captive environment is collected and assessed by three teams of animal scientists. Oneliners from literature about behavioral ecology, health, and welfare and human-animal relationship of 90 mammal species are collected by team 1 in a database and strength of behavioral needs and risks is assessed by team 2. Based on summaries of those strengths the suitability of the mammal species is assessed by team 3. Involvement of stakeholders for supplying bibliographic information and assessments was propagated. Combining the individual and subjective assessments of the scientists using statistical methods makes the final assessment of a rank order of suitability as pet of those species less biased and more objective. The framework is dynamic and produces an initial rank ordered list of the pet suitability of 90 mammal species, methods to add new mammal species to the list or remove animals from the list and a method to incorporate stakeholder assessments. A model is developed that allows for provisional classification of pet suitability. Periodical update of the pet suitability framework is expected to produce an updated list with increased reliability and accuracy. Furthermore, the framework could be further developed to assess the pet suitability of additional species of other animal groups, e.g., birds, reptiles, and amphibians. PMID:27243023

  3. Behavioral Ecology of Captive Species: Using Bibliographic Information to Assess Pet Suitability of Mammal Species

    Science.gov (United States)

    Koene, Paul; de Mol, Rudi M.; Ipema, Bert

    2016-01-01

    Which mammal species are suitable to be kept as pet? For answering this question many factors have to be considered. Animals have many adaptations to their natural environment in which they have evolved that may cause adaptation problems and/or risks in captivity. Problems may be visible in behavior, welfare, health, and/or human–animal interaction, resulting, for example, in stereotypies, disease, and fear. A framework is developed in which bibliographic information of mammal species from the wild and captive environment is collected and assessed by three teams of animal scientists. Oneliners from literature about behavioral ecology, health, and welfare and human–animal relationship of 90 mammal species are collected by team 1 in a database and strength of behavioral needs and risks is assessed by team 2. Based on summaries of those strengths the suitability of the mammal species is assessed by team 3. Involvement of stakeholders for supplying bibliographic information and assessments was propagated. Combining the individual and subjective assessments of the scientists using statistical methods makes the final assessment of a rank order of suitability as pet of those species less biased and more objective. The framework is dynamic and produces an initial rank ordered list of the pet suitability of 90 mammal species, methods to add new mammal species to the list or remove animals from the list and a method to incorporate stakeholder assessments. A model is developed that allows for provisional classification of pet suitability. Periodical update of the pet suitability framework is expected to produce an updated list with increased reliability and accuracy. Furthermore, the framework could be further developed to assess the pet suitability of additional species of other animal groups, e.g., birds, reptiles, and amphibians. PMID:27243023

  4. Behavioral ecology of captive species: using bibliographic information to assess pet suitability of mammal species

    Directory of Open Access Journals (Sweden)

    Paul eKoene

    2016-05-01

    Full Text Available Which mammal species are suitable to be kept as pet? For answering this question many factors have to be considered. Animals have many adaptations to their natural environment in which they have evolved that may cause adaptation problems and/or risks in captivity. Problems may be visible in behavior, welfare, health and/or human-animal interaction, resulting for example in stereotypies, disease and fear. A framework is developed in which bibliographic information of mammal species from the wild and captive environment is collected and assessed by three teams of animal scientists. Oneliners from literature about behavioral ecology, health, and welfare and human-animal relationship (HAR of 90 mammal species are collected by team 1 in a database and strength of behavioral needs and risks is assessed by team 2. Based on summaries of those strengths the suitability of the mammal species is assessed by team 3. Involvement of stakeholders for supplying bibliographic information and assessments was propagated. Combining the individual and subjective assessments of the scientists using statistical methods makes the final assessment of a rank order of suitability as pet of those species less biased and more objective. The framework is dynamic and produces an initial rank ordered list of the pet suitability of 90 mammal species, methods to add new mammal species to the list or remove animals from the list and a method to incorporate stakeholder assessments. A model is developed that allows for provisional classification of pet suitability. Periodical update of the pet suitability framework is expected to produce an updated list with increased reliability and accuracy. Furthermore, the framework could be further developed to assess the pet suitability of additional species of other animal groups, e.g. birds, reptiles and amphibians.

  5. Diversidad isoenzimática en accesiones de Medicago polymorpha colectadas a lo largo del gradiente climático en Chile, y su relación con otras especies de Medicago Isozymatic diversity in accesions of Medicago polymorpha collected along an environmental gradient in Chile, and its relationship with other species of Medicago

    Directory of Open Access Journals (Sweden)

    MARIO PAREDES

    2000-09-01

    Full Text Available Medicago polymorpha es una especie naturalizada en Chile que presenta una gran varaibilidad en características agronómicas, tales como precocidad, producción de semilla, y producción de materia seca, asociada de un gradiente climático. Los objetivos de este trabajo fueron evaluar la diversidad isoenzimática en accesiones de M. polymorpha y su relación con la variabilidad fenotípica, y establecer posibles relaciones genéticas con otras especies de Medicago. Para esto se analizaron 12 sistemas isoenzimáticos en 41 accesiones de M. polymorpha, provenientes de un amplio rango de condiciones edafoclimáticas, y de 16 accesiones de M. arabica, M rotata, M. rigidula, M. tornata, M. littoralis y M. truncatula. Los resultados indicaron una escasa diversidad isoenzimática dentro de M. polymorpha, y una falta de correspondencia con la variabilidad fenotípica y distribución geográfica de las accesiones. El análisis multivariado permitió agrupar las especies en forma separada. M. arabica, que también está naturalizada en Chile, fue la especie mas cercana a M. polymorpha, en cambio, M. littoralis, M. rigidula y M. rotata fueron las especies que presentaron una mayor distancia genética con M. polymorpha.Medicago polymorpha is a naturalized species in Chile which presents great variability in agronomic traits such as flowering and reproductive phenology, seed production, seed hardness, and dry matter production, associated to a climatic gradient. The objectives of this work were to assess the isozymatic diversity in accessions of M. polymorpha and its relation with the phenotypic variability, and to establish possible genetic links with other species of Medicago. Forty one accessions of M. polymorpha obtained from a wide range of climatic and edaphic conditions, and 16 accessions of M. arabica, M. rotata, M. rigidula, M. tornata, M. littoralis and M. truncatula, were evaluated for 12 isozyme systems. The results showed a low isozymatic

  6. Digitization of photographic collections

    Science.gov (United States)

    Frey, Franziska S.

    1997-04-01

    Almost every major institution is contemplating some kind of digital-imaging project, but sources of information and experience are few. Technical aspects of digital imaging present libraries and archives with very difficult and complex choices. There are as yet no codified technical standards for image capture, display, and output, all of which affect the image quality, the cost, and, ultimately, the success or failure of the entire undertaking. Even if a vendor will provide a finished 'turnkey' system, an institution must understand the nature of the digital- imaging product they are buying. They must know how much image quality and functionality can be expected from it, both now and in the future. New tools must be provided for collection managers to make that possible. Beyond these purely technical issues, institutions must be able to relate the digital-image database system to the fundamental collection activities of access and preservation. Despite all the possibilities for manipulating digital images, image quality choices made when files are first created have the same 'finality' that they have in conventional photography. They will have a profound effect on project cost and the value of the final project to the users. Image quality requirements therefore have to be established carefully before a digitization project starts.

  7. Partonic collectivity at RHIC

    Science.gov (United States)

    Shi, Shusu

    2009-10-01

    The measurement of event anisotropy, often called v2, provides a powerful tool for studying the properties of hot and dense medium created in high-energy nuclear collisions. The important discoveries of partonic collectivity and the brand-new process for hadronization - quark coalescence were obtained through a systematic analysis of the v2 for 200 GeV Au+Au collisions at RHIC [1]. However, early dynamic information might be masked by later hadronic rescatterings. Multistrange hadrons (φ, ξ and φ) with their large mass and presumably small hadronic cross sections should be less sensitive to hadronic rescattering in the later stage of the collisions and therefore a good probe of the early stage of the collision. We will present the measurement of v2 of π, p, KS^0, λ, ξ, φ and φ in heavy ion collisions. In minimum-bias Au+Au collisions at √sNN = 200 GeV, a significant amount of elliptic flow, almost identical to other mesons and baryons, is observed for φ and φ. Experimental observations of pT dependence of v2 of identified particles at RHIC support partonic collectivity. [4pt] [1] B. I. Abelev et al., (STAR Collaboration), Phys. Rev. C 77, 054901 (2008).

  8. DataCollection Prototyping

    CERN Multimedia

    Beck, H.P.

    DataCollection is a subsystem of the Trigger, DAQ & DCS project responsible for the movement of event data from the ROS to the High Level Triggers. This includes data from Regions of Interest (RoIs) for Level 2, building complete events for the Event Filter and finally transferring accepted events to Mass Storage. It also handles passing the LVL1 RoI pointers and the allocation of Level 2 processors and load balancing of Event Building. During the last 18 months DataCollection has developed a common architecture for the hardware and software required. This involved a radical redesign integrating ideas from separate parts of earlier TDAQ work. An important milestone for this work, now achieved, has been to demonstrate this subsystem in the so-called Phase 2A Integrated Prototype. This prototype comprises the various TDAQ hardware and software components (ROSs, LVL2, etc.) under the control of the TDAQ Online software. The basic functionality has been demonstrated on small testbeds (~8-10 processing nodes)...

  9. Collective ion acceleration

    International Nuclear Information System (INIS)

    Progress achieved in the understanding and development of collective ion acceleration is presented. Extensive analytic and computational studies of slow cyclotron wave growth on an electron beam in a helix amplifier were performed. Research included precise determination of linear coupling between beam and helix, suppression of undesired transients and end effects, and two-dimensional simulations of wave growth in physically realizable systems. Electrostatic well depths produced exceed requirements for the Autoresonant Ion Acceleration feasibility experiment. Acceleration of test ions to modest energies in the troughs of such waves was also demonstrated. Smaller efforts were devoted to alternative acceleration mechanisms. Langmuir wave phase velocity in Converging Guide Acceleration was calculated as a function of the ratio of electron beam current to space-charge limiting current. A new collective acceleration approach, in which cyclotron wave phase velocity is varied by modulation of electron beam voltage, is proposed. Acceleration by traveling Virtual Cathode or Localized Pinch was considered, but appears less promising. In support of this research, fundamental investigations of beam propagation in evacuated waveguides, of nonneutral beam linear eigenmodes, and of beam stability were carried out. Several computer programs were developed or enhanced. Plans for future work are discussed

  10. Collective ion acceleration

    Energy Technology Data Exchange (ETDEWEB)

    Godfrey, B.B.; Faehl, R.J.; Newberger, B.S.; Shanahan, W.R.; Thode, L.E.

    1977-01-01

    Progress achieved in the understanding and development of collective ion acceleration is presented. Extensive analytic and computational studies of slow cyclotron wave growth on an electron beam in a helix amplifier were performed. Research included precise determination of linear coupling between beam and helix, suppression of undesired transients and end effects, and two-dimensional simulations of wave growth in physically realizable systems. Electrostatic well depths produced exceed requirements for the Autoresonant Ion Acceleration feasibility experiment. Acceleration of test ions to modest energies in the troughs of such waves was also demonstrated. Smaller efforts were devoted to alternative acceleration mechanisms. Langmuir wave phase velocity in Converging Guide Acceleration was calculated as a function of the ratio of electron beam current to space-charge limiting current. A new collective acceleration approach, in which cyclotron wave phase velocity is varied by modulation of electron beam voltage, is proposed. Acceleration by traveling Virtual Cathode or Localized Pinch was considered, but appears less promising. In support of this research, fundamental investigations of beam propagation in evacuated waveguides, of nonneutral beam linear eigenmodes, and of beam stability were carried out. Several computer programs were developed or enhanced. Plans for future work are discussed.

  11. Odonata collected in Hainan and Guangdong Provinces, China in 2014

    OpenAIRE

    Garrison, Rosser W.; Cordero-Rivera, Adolfo; Zhang, Haomiao

    2015-01-01

    A three week trip to Hainan and Guangdong provinces was conducted between 26 May and 11 June 2014, sampling odonates within the vicinity of Diaoluoshan National Nature Reserve, Shuimanxing Village (both Hainan Province) and Nankunshan Nature Reserve (Guangdong Province). Additionally, Cordero and Zhang collected at Shuimanxing Village between 13 and 23 June. A total of 103 species in 78 genera were found for Hainan Province and 51 species in 42 genera in Guangdong Province. Lists of all spec...

  12. Coevolution of Symbiotic Species

    OpenAIRE

    Leok, Boon Tiong Melvin

    1996-01-01

    This paper will consider the coevolution of species which are symbiotic in their interaction. In particular, we shall analyse the interaction of squirrels and oak trees, and develop a mathematical framework for determining the coevolutionary equilibrium for consumption and production patterns.

  13. Prices and species diversity

    DEFF Research Database (Denmark)

    Sauer, Johannes

    . Based on a biologically defined species diver-sity index we incorporate biodiversity either as a desirable output or biodiversity loss as a detrimental input. Beside quantitative shadow price measures the main contribu-tion of the work is the evidence that parametric scores of environmental efficiency...

  14. Response of chironomid species (Diptera, Chironomidae to water temperature: effects on species distribution in specific habitats

    Directory of Open Access Journals (Sweden)

    L. Marziali

    2013-09-01

    Full Text Available The response of 443 chironomid species to water temperature was analyzed, with the aim of defining their thermal optimum, tolerance limits and thermal habitat. The database included 4442 samples mainly from Italian river catchments collected from the 1950s up to date. Thermal preferences were calculated separately for larval and pupal specimens and for different habitats: high altitude and lowland lakes in the Alpine ecoregion; lowland lakes in the Mediterranean ecoregion; heavily modified water bodies; kryal, krenal, rhithral and potamal in running waters. Optimum response was calculated as mean water temperature, weighted by species abundances; tolerance as weighted standard deviation; skewness and kurtosis as 3rd and 4th moment statistics. The responses were fitted to normal uni- or plurimodal Gaussian models. Cold stenothermal species showed: i unimodal response, ii tolerance for a narrow temperature range, iii optima closed to their minimum temperature values, iv leptokurtic response. Thermophilous species showed: i optima at different temperature values, ii wider tolerance, iii optima near their maximum temperature values, iv platikurtic response, often fitting a plurimodal model. As expected, lower optima values and narrower tolerance were obtained for kryal and krenal, than for rhithral, potamal and lakes. Thermal response curves were produced for each species and were discussed according to species distribution (i.e. altitudinal range in running water and water depth in lakes, voltinism and phylogeny. Thermal optimum and tolerance limits and the definition of the thermal habitat of species can help predicting the impact of global warming on freshwater ecosystems.

  15. Emergence of collective memories

    CERN Document Server

    Lee, Sungmin; Holme, Petter

    2010-01-01

    We understand the dynamics of the world around us as by associating pairs of events, where one event has some influence on the other. These pairs of events can be aggregated into a web of memories representing our understanding of an episode of history. The events and the associations between them need not be directly experienced-they can also be acquired by communication. In this paper we take a network approach to study the dynamics of memories of history. First we investigate the network structure of a data set consisting of reported events by several individuals and how associations connect them. We focus our measurement on degree distributions, degree correlations, cycles (which represent inconsistencies as they would break the time ordering) and community structure. We proceed to model effects of communication using an agent-based model. We investigate the conditions for the memory webs of different individuals to converge to collective memories, how groups where the individuals have similar memories (b...

  16. JINR Rapid Communications. Collection

    International Nuclear Information System (INIS)

    The present collection of rapid communications from JINR, Dubna, contains eight separate reports on Lorentz transformations with superluminal velocities, photo chromic effect in HTSC films, the investigation of hypernuclei in the Nuclotron accelerator, a new hadron jets finding algorithm in the four-dimensional velocity space, investigations of neutral particle production by relativistic nuclei on the LHE 90-channel γ-spectrometer (results and perspectives), coherent meson production in the dp → 3HeX reaction, the relativistic projectile nuclei fragmentation and A-dependence of nucleon Fermi-momenta, energy spectra of γ-quanta from d-propane interactions at momentum Pd = 1.25 GeV/c per nucleon. 86 refs., 26 figs., 4 tabs

  17. Geoengineering as Collective Experimentation.

    Science.gov (United States)

    Stilgoe, Jack

    2016-06-01

    Geoengineering is defined as the 'deliberate and large-scale intervention in the Earth's climatic system with the aim of reducing global warming'. The technological proposals for doing this are highly speculative. Research is at an early stage, but there is a strong consensus that technologies would, if realisable, have profound and surprising ramifications. Geoengineering would seem to be an archetype of technology as social experiment, blurring lines that separate research from deployment and scientific knowledge from technological artefacts. Looking into the experimental systems of geoengineering, we can see the negotiation of what is known and unknown. The paper argues that, in renegotiating such systems, we can approach a new mode of governance-collective experimentation. This has important ramifications not just for how we imagine future geoengineering technologies, but also for how we govern geoengineering experiments currently under discussion. PMID:25862639

  18. Data collection techniques.

    Science.gov (United States)

    Morgan, G A; Harmon, R J

    2001-08-01

    We have provided an overview of techniques used to assess variables in the applied behavioral sciences. Most of the methods are used by both quantitative/positivist and qualitative/constructivist researchers but to different extents. Qualitative researchers prefer more open-ended, less structured data collection techniques than do quantitative researchers. Direct observation of participants is common in experimental and qualitative research; it is less common in so-called survey research, which tends to use self-report questionnaires. It is important that investigators use instruments that are reliable and valid for the population and purpose for which they will be used. Standardized instruments have manuals that provide norms and indexes of reliability and validity. However, if the populations and purpose on which these data are based are different from yours, it may be necessary for you to develop your own instrument or provide new evidence of reliability and validity. PMID:11501698

  19. Collective spatial keyword querying

    DEFF Research Database (Denmark)

    Cao, Xin; Cong, Gao; Jensen, Christian S.;

    2011-01-01

    With the proliferation of geo-positioning and geo-tagging, spatial web objects that possess both a geographical location and a textual description are gaining in prevalence, and spatial keyword queries that exploit both location and textual description are gaining in prominence. However, the...... queries studied so far generally focus on finding individual objects that each satisfy a query rather than finding groups of objects where the objects in a group collectively satisfy a query. We define the problem of retrieving a group of spatial web objects such that the group's keywords cover the query......'s keywords and such that objects are nearest to the query location and have the lowest inter-object distances. Specifically, we study two variants of this problem, both of which are NP-complete. We devise exact solutions as well as approximate solutions with provable approximation bounds to the problems. We...

  20. Collective biogas plants

    International Nuclear Information System (INIS)

    Papers contributed to the European seminar on collective biogas plants held at Herning, Denmark on October 22-23 under the auspices of the Commission of the European Communities, Directorate-General for Energy (DG XVII) are presented. Within the framework of the THERMIE programme, a network of OPETs (Organizations for the Promotion of Energy Technologies) was set up in order to disseminate information on new energy technologies throughout the European communities. The potential for further implementation of centralized capacity for the conversion of animal manures and other organic wastes to bio-fuels, not only in central and eastern Europe but also in the developing countries, is discussed in addition to the relevant technologies. Actual biomass conversion plants are described and details are given on operational experience and plant management. Agricultural, economic and policy aspects are also dealt with. (AB)

  1. Networks for Collective Action

    CERN Document Server

    Bruggeman, Jeroen

    2016-01-01

    A significant challenge is to explain how people cooperate for public goods. The problem is more difficult for people when their public good and its benefits are unclear at the outset and its timing and costs are uncertain. However, history shows that even under adverse conditions, people can cooperate. As a prelude to cooperation, people can establish (or reinforce) social ties through communication. Consequently, individuals' cognitive states may synchronize, so that they can depend on like-minded people rather than on a situation beyond their control. Whether this succeeds largely depends on the network that is formed (or used), which should also help them to overcome misunderstandings and to synchronize relatively fast. From a well-known model of social influence it is inferred that network patterns with high algebraic connectivity, featuring multiple independent connections, are optimal for collective action.

  2. JINR Rapid Communications. Collection

    International Nuclear Information System (INIS)

    The present collection of rapid communications from JINR, Dubna, contains nine separate reports on quasi-classical description of one-nucleon transfer reactions with heavy ions, elastic and inelastic scattering in the high energy approximation, experimental study of fission and evaporation cross sections for 6 He + 209 Bi reaction, d↑ + 12 C → p + X at Θp = 0o in the region of high internal momenta in the deuteron, the Nuclotron internal targets, actively screened superconducting magnets, using of polarized target in backward elastic dp scattering, application of transputers in the data acquisition system of the INESS-ALPHA spectrometer, narrow dibaryon resonances with isotopic spin I=2. 93 refs., 27 figs., 4 tabs

  3. Innovation and collective entrepreneurship

    DEFF Research Database (Denmark)

    Spear, Roger

    2012-01-01

    different perspectives on innovation and social innovation and the dynamic interaction through collective entrepreneurship in the the social and solidarity economy; bringing out process and outcome dimensions of innovation. And it will develop an understanding of the drivers and barriers to innovation......This paper aims to examine different forms of innovation including social innovation, and why innovation and social innovation have become important themes in public policy – in a context of the increasing and diverse demands on welfare regimes, and in an era of constrained budgets. It will review......, including the role of the institutional and policy framework. It will set this analysis within the context of public policy, demonstrating the role of public policy in enabling such innovations in the social and solidarity economy....

  4. Confining collective motion

    Science.gov (United States)

    Bartolo, Denis; Bricard, Antoine; Caussin, Jean-Baptiste; Savoie, Charles; Das, Debasish; Chepizhko, Oleskar; Peruani, Fernando; Saintillan, David

    2014-11-01

    It is well established that geometrical confinement have a significant impact on the structure and the flow properties of complex fluids. Prominent examples include the formation of topological defects in liquid crystals, and the flow instabilities of viscoelastic fluids in curved geometries. In striking contrast very little is known about the macroscopic behavior of confined active fluids. In this talk we show how to motorize plastic colloidal beads and turn them into self-propelled particles. Using microfluidic geometries we demonstrate how confinement impacts their collective motion. Combining quantitative experiments, analytical theory and numerical simulations we show how a population of motile bodies interacting via alignement and repulsive interactions self-organizes into a single heterogeneous macroscopic vortex that lives on the verge of a phase separation.

  5. Speciation of Arsenic in Ambient Aerosols Collected in Los Angeles

    OpenAIRE

    Rabano, Erlinda S.; Castillo, Norma T.; Torre, Kahirup J.; Paul A. Solomon

    1989-01-01

    First-time measurements of the potentially toxic inorganic species of arsenic (arsenite arid arsenate) have been obtained in fine (2.5 µm AD) atmospheric particles in the Los Angeles area. A recently developed method that includes procedures for sample collection, preparation, and analysis was used in this study. Size-fractlonated aerosol samples were collected with a high-volume dichotomous virtual impactor that employed polytetrafluoroethylene filters. Results were obtained for the recovery...

  6. Catalog of Osteological Collections of Aquatic Mammals from Mexico

    OpenAIRE

    Vidal, Omar

    1991-01-01

    This paper compiles available information on osteological and other anatomical specimens of at least 51 species of aquatic mammals (34 extant, one recently extinct and 16 fossil) collected in Mexico between 1868 and 1990 and housed in 29 scientific institutions (18 in the USA, nine in Mexico, one in the Netherlands, and one in England). These collections contain a total of 1427 specimens representing 10 families of odontocetes (Squalodontidaet , Rhabdosteidaet , Pontoporiidae, Albireonidae...

  7. Collection of plants of the genus Melocactus (Tourn. Link et Otto (Cactaceae Juss. and peculiarities of their reproduction

    Directory of Open Access Journals (Sweden)

    Kateryna Baglay

    2014-04-01

    Full Text Available Taxonomic composition of Melocactus collection at O.V. Fomin Botanical Garden, as well as peculiarities of their reproduction under the conditions of introduction has been considered. Rare and threatened Melocactus species in the collection were identified.

  8. Statistical Mechanics of Collective Transport by Ants

    Science.gov (United States)

    Pinkoviezky, Itai; Gelblum, Aviram; Fonio, Ehud; Ghosh, Abhijit; Gov, Nir; Feinerman, Ofer

    Collective decisions and cooperation within groups are essential for the survival of many species. Conflicts within the group must be suppressed but conformism may render the system unresponsive to new information. Collective transport by ants is therefore an ideal model system to study how animal groups optimize these opposing requirements. We combine experiments and theory to characterize the collective transport. The ants are modeled as binary Ising spins, representing the two roles ants can perform during transport. It turns out that the ants poise themselves collectively near a critical point where the response to a newly attached ant is maximized. We identify the size as being proportional to an inverse effective temperature and thus the system can exhibit a mesoscopic transition between order and disorder by manipulating the size. Constraining the cargo with a string makes the system behave as a strongly non-linear pendulum. Theoretically we predict that a Hopf bifurcation occurs at a critical size followed by a global bifurcation where full swings emerge. Remarkably, these theoretical predictions were verified experimentally.

  9. Description of Culicoides lisicarruni (Diptera: Ceratopogonidae, a new species from Cundinamarca, Colombia

    Directory of Open Access Journals (Sweden)

    Ligia Moncada

    2010-12-01

    Full Text Available A new species of Culicoides of the subgenus Diphaomyia Vargas from high altitudes of the Andes in Colombia is described and photographied. The species is compared with its similar congener Culicoides marinkellei Wirth & Lee. Data on the collecting site and notes on the species daily activity are also provided.

  10. Three new species of Eurypon Gray, 1867 from Northeastern Brazil (Poecilosclerida; Demospongiae; Porifera).

    Science.gov (United States)

    Santos, George Garcia; França, Fernando; Pinheiro, Ulisses

    2014-01-01

    Three new species of Eurypon from Northeastern Brazil are described: Eurypon clavilectuarium sp. nov.; Eurypon suassunai sp. nov. and Eurypon distyli sp. nov. Samples were collected from the continental shelf of Rio Grande do Norte, Bahia and Paraíba States. While the majority of Atlantic Eurypon species have been described from deep water, two of three new species described in this study were collected from shallow depths. The three new species from Brazil were compared with all other eighteen Eurypon species described from the Atlantic.  PMID:25543569

  11. Trichoderma species from China

    Institute of Scientific and Technical Information of China (English)

    ZHANG Chu-long; XU Tong

    2004-01-01

    @@ Seventeen species of Trichoderma, isolated from soil or tree bark from China are identified based on morphological and physiological characters, and from their phylogenetic position inferred from parsimony analyses of nucleotide sequences of the internal transcribed spacer regions of the rDNA cluster (ITS1 and 2) and partial sequences of translation elongation factor 1-alpha (tef1) . There were T. citrinoviride, T. longibrachiatum, T. sinensis in section Longibrachiatum, T. atroviride, T.koningii, T. viride, T. asperellum, T. hamatum, T. erinaceum in section Trichoderma, T.harzianum (H.lixii) , T. inhamatum, T. velutinum , T. cerinum , T. strictipile , T. spirale ,T. virens, H. nigrovirens (Trichoderma sp.) in section Pachybasium. Among them four species:T. asperellum , T. velutinum , T. cerinum , T. spirale were reported firstly in China. In addition, two suspected new taxa (Trichoderma spp.) in Trichoderma section were proposed:Trichoderma sp. 1 (ZAUT261, 4, 4A, 15A, 2C), Trichoderma sp. 2 (2B, 5, 7A, 7B, 9A).Trichoderma sp. 1 was similar to T. hamatum , but the temperature optimum for mycelial growth was lower than that of T. hamatum and the species tended to form hemisphaerical pustule with Telatively larger conidia (average length 4.6 μm × 2.8 μm). Trichoderma sp. 2 was distinguished morphologically from related species T. strigosum, T. pubescens, T. erinaceum, T. hamatum and Trichoderma sp. 1 in pustules on CMD without fertile or sterile conidiophore elongation and distinctive phialide shape, the conidiophore branches similar to T. koningii, but the conidia similar to T. viride, subglobose, conspicuously tuberculate.

  12. Zoological species medicine

    OpenAIRE

    Lourenço, Marisa Isabel da Costa

    2015-01-01

    Externship report done in order to describe and inform about the activities followed during six months externship at three zoological institutions in the United States of America. These externships were performed in order to conclude the sixth and last year of the integrated master in veterinary medicine of the University of Evora, with the main goal of obtaining more knowledge and experience in this area of the veterinary field. From the more varied number of species, to the m...

  13. Cross-species infections.

    Science.gov (United States)

    Weiss, R A

    2003-01-01

    Animals have always been a major source of human infectious disease. Some infections like rabies are recognized as primary zoonoses caused in each case by direct animal-to-human transmission, whereas others like measles become independently sustained within the human population so that the causative virus has diverged from its morbillivirus progenitor in ruminants. Recent examples of direct zoonoses are variant Creutzfeldt-Jakob disease arising from bovine spongiform encephalopathy, and the H5N1 avian influenza outbreak in Hong Kong. Recent epidemic diseases of animal origin are the 1918-1919 influenza pandemic, and the acquired immune deficiency syndrome pandemic caused by human immunodeficiency virus. Some retroviruses move into and out of the chromosomal DNA of the host germline, so that they may oscillate between being an avirulent inherited Mendelian trait in one species and an infectious pathogen in another. Cross-species viral and other infections are reviewed historically with respect to the evolution of virulence and the concern about iatrogenic enhancement of cross-species transfer by medical procedures akin to xenotransplantation. PMID:12934941

  14. Bounding species distribution models

    Institute of Scientific and Technical Information of China (English)

    Thomas J. STOHLGREN; Catherine S. JARNEVICH; Wayne E. ESAIAS; Jeffrey T. MORISETTE

    2011-01-01

    Species distribution models are increasing in popularity for mapping suitable habitat for species of management concern.Many investigators now recognize that extrapolations of these models with geographic information systems (GIS) might be sensitive to the environmental bounds of the data used in their development,yet there is no recommended best practice for “clamping” model extrapolations.We relied on two commonly used modeling approaches:classification and regression tree (CART) and maximum entropy (Maxent) models,and we tested a simple alteration of the model extrapolations,bounding extrapolations to the maximum and minimum values of primary environmental predictors,to provide a more realistic map of suitable habitat of hybridized Africanized honey bees in the southwestern United States.Findings suggest that multiple models of bounding,and the most conservative bounding of species distribution models,like those presented here,should probably replace the unbounded or loosely bounded techniques currently used [Current Zoology 57 (5):642-647,2011].

  15. Description of a New Mangrove Root Dwelling Species of Teleotanais (Crustacea: Peracarida: Tanaidacea) from India, with a Key to Teleotanaidae

    Digital Repository Service at National Institute of Oceanography (India)

    Larsen, K.; Sahoo, G.; Ansari, Z.A.

    Tanaidaceans collected from mangrove pneumatophores on the west coast of India included females and mancae of a new species of the rare and plesiomorphic family Teleotanaidae, described herein as Teleotanais indiaensisi sp. nov. A key to the species...

  16. Litomosoides (Nemata: Filarioidea) of bats from Bolivia with records for three known species and the description of a new species.

    Science.gov (United States)

    Notarnicola, Juliana; Ruíz, F Agustín Jiménez; Gardner, Scott L

    2010-08-01

    Herein, we describe Litomosoides salazari n. sp. collected from the body cavity of the yellow bat, Lasiurus ega , from Bolivia. This new species of filarioid nematode is most closely related to the carinii group and is characterized by its relatively small size with the vulva located slightly posterior to the esophago-intestinal junction; an arrow-shaped buccal capsule; and a short, rounded tail. New host and locality records for both Litomosoides hamletti and L. chandleri in phyllostomid bats, and L. brasiliensis occurring in both phyllostomid and vespertilionid bats, are provided. The morphological variability of the specimens is documented by providing comparative measurements of 3 known species. Litomosoides brasiliensis occurs in 6 species of bats from Bolivia and was the most common species of filarioid nematode encountered. All 4 species of nematodes, including the new species, were found in sympatry at Chijchijpa, a locality in the Yungas of Bolivia. PMID:20738202

  17. Integrating Biodiversity Data into Botanic Collections

    Science.gov (United States)

    2016-01-01

    Abstract Background Today's species names are entry points into a web of publicly available knowledge and are integral parts of legislation concerning biological conservation and consumer safety. Species information usually is fragmented, can be misleading due to the existence of different names and might even be biased because of an identical name that is used for a different species. Safely navigating through the name space is one of the most challenging tasks when associating names with data and when decisions are made which name to include in legislation. Integrating publicly available dynamic data to characterise plant genetic resources of botanic gardens and other facilities will significantly increase the efficiency of recovering relevant information for research projects, identifying potentially invasive taxa, constructing priority lists and developing DNA-based specimen authentication. New information To demonstrate information availability and discuss integration into botanic collections, scientific names derived from botanic gardens were evaluated using the Encyclopedia of Life, The Catalogue of Life and The Plant List. 98.5% of the names could be verified by the combined use of these providers. Comparing taxonomic status information 13 % of the cases were in disagreement. About 7 % of the verified names were found to be included in the International Union for Conservation of Nature Red List, including one extinct taxon and three taxa with the status "extinct in the wild". As second most important factor for biodiversity loss, potential invasiveness was determined. Approximately 4 % of the verified names were detected using the Global Invasive Species Information Network, including 208 invasive taxa. According to Delivering Alien Invasive Species Inventories for Europe around 20 % of the verified names are European alien taxa including 15 of the worst European invasive taxa. Considering alternative names in the data recovery process, success increased up

  18. LONG TERM COLLECTIONS

    CERN Multimedia

    STAFF ASSOCIATION

    2010-01-01

    ACKNOWLEDGMENTS The Long-Term Collections (CLT) committee would like to warmly thank its faithful donors who, year after year, support our actions all over the world. Without you, all this would not be possible. We would like to thank, in particular, the CERN Firemen’s Association who donated 5000 CHF in the spring thanks to the sale of their traditional calendar, and the generosity of the CERN community. A huge thank you to the firemen for their devotion to our cause. And thank you to all those who have opened their door, their heart, and their purses! Similarly, we warmly thank the CERN Yoga Club once again for its wonderful donation of 2000 CHF we recently received. We would also like to tell you that all our projects are running well. Just to remind you, we are currently supporting the activities of the «Réflexe-Partage» Association in Mali; the training centre of «Education et Développement» in Abomey, Benin; and the orphanage and ...

  19. Collectes à long terme

    CERN Document Server

    Collectes à long terme

    2014-01-01

    En cette fin d’année 2014 qui approche à grands pas, le Comité des Collectes à Long Terme remercie chaleureusement ses fidèles donatrices et donateurs réguliers pour leurs contributions à nos actions en faveur des plus démunis de notre planète. C’est très important, pour notre Comité, de pouvoir compter sur l’appui assidu que vous nous apportez. Depuis plus de 40 ans maintenant, le modèle des CLT est basé principalement sur des actions à long terme (soit une aide pendant 4-5 ans par projet, mais plus parfois selon les circonstances), et sa planification demande une grande régularité de ses soutiens financiers. Grand MERCI à vous ! D’autres dons nous parviennent au cours de l’année, et ils sont aussi les bienvenus. En particulier, nous tenons à remercier...

  20. Collection for Ecuador

    CERN Multimedia

    Staff Association

    2016-01-01

    Following the terrible earthquake in Ecuador on April 16th, 2016, a collection was organized at CERN and sent to the INEPE Institute in Quito to help the victims. CERN has received the following two letters that we want to share with you. We wish our Ecuadorian friends a prompt recovery and keep them in our thoughts! Dear Fabiola and Alessandro, […] As the CERN contact person in Ecuador, and as the Country Representative for Ecuador in the CMS Experiment, I would like to thank you, the offices you precede and, through you, the whole CERN community, for all the concern and generosity after the terrible earthquake in the coast of Ecuador.  Rather slowly, but full of hope, our people are overcoming this difficult situation.  Contributions from different sources abroad, like CERN's, combined with the rapid and generous local intervention, have greatly helped the affected communities cope with the most urgent needs in order to restart their lives. Once again, I express my ...