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Sample records for arthrobacter species collected

  1. Biosorption of Cr(VI)_ and Cr(III)_Arthrobacter species

    CERN Document Server

    Gelagutashvili, E; Gurielidze, M

    2011-01-01

    The biosorption of Cr(VI)_ and Cr(III)_ Arthrobacter species (Arthrobacter globiformis and Arthrobacter oxidas) was studied simultaneous application dialysis and atomic absorption analysis. Also biosorption of Cr(VI) in the presence of Zn(II) during growth of Arthrobacter species and Cr(III) in the presence of Mn(II) were discussed. Comparative Cr(VI)_ and Cr(III)_ Arthrobacter species shown, that Cr(III) was more effectively adsorbed by both bacterium than Cr(VI). The adsorption capacity is the same for both the Chromium-Arthrobacter systems. The biosorption constants for Cr(III) is higher than for Cr(VI) 5.7-5.9- fold for both species. Comparative Freundlich biosorption characteristics Cr(VI) Arthrobacter species of living and dry cells shown, that capacity(n) is in both cases the same(1.25,1.35). Dry cells have larger biosorption constant for both species, than living cells. Biosorption characteristics (K) and (n) for A. oxidas are without Mn(II) and in the presence of Mn(II) 2.6 x 10-4 (K), 1.37 (n) and 2...

  2. Ability of Cyanobacteria and Arthrobacter Species to Remove Gold Ions from Solution

    CERN Document Server

    Gelagutashvili, E; Rcheulichvili, A; Tsakadze, K; Bagdavadze, N; Kuchava, N; Djandjalia, M

    2012-01-01

    The biosorption of Au(III) - Spirulina platensis and Au(III) - Arthrobacter species (Arthrobacter globiformis and Arthrobacter oxidas) were studied at simultaneous application of dialysis and atomic absorption analysis. Also biosorption of Au(III) - Spirulina platensis at various pH were discussed. Biosorption constants for Au-cyanobacteris Spirulina platensis at different pH, and for Arthrobacter oxidas and Arthrobacter globiformis at pH=7.1 are : 1. K=3.91 x 10-4 (Au- Arthrobacter oxidas 61B, pH=7.1) 2. K=14.17 x 10-4 . (Au- Arthrobacter globiformis 151B, pH=7.1). 3. K=2.07x10-4 (Au- Spirulina platensis, pH=7.1) 4. K= 4.87x10-4 (Au- Spirulina platensis, pH=6.2) 5. K=8.7x10-4 (Au- Spirulina platensis, pH=8.4)

  3. Bioavailability of Ag(I) with Arthrobacter oxidas and Arthrobacter globiformis

    CERN Document Server

    Gelagutashvili, E; Ginturi, E; Bagdavadze, N; Kuchava, N; Tsakadze, K; Janjalia, M

    2012-01-01

    The biosorption of Ag(I)_ Arthrobacter species (Arthrobacter globiformis 151B and Arthrobacter oxidas 61B) was studied at simultaneous application of dialysis and atomic absorption analysis. The biosorption constants and nature of interaction for Ag(I) -Arthrobacter oxidas and Ag(I) -Arthrobacter globiformis were determined. The biosorption constants for Ag(I)- -Arthrobacter globiformis and for Ag(I) -Arthrobacter oxidas equal to 65.0 x10-4 and 35.0 x10-4 respectively.

  4. Review of the taxonomy of the genus Arthrobacter, emendation of the genus Arthrobacter sensu lato, proposal to reclassify selected species of the genus Arthrobacter in the novel genera Glutamicibacter gen. nov., Paeniglutamicibacter gen. nov., Pseudoglutamicibacter gen. nov., Paenarthrobacter gen. nov. and Pseudarthrobacter gen. nov., and emended description of Arthrobacter roseus.

    Science.gov (United States)

    Busse, Hans-Jürgen

    2016-01-01

    In this paper, the taxonomy of the genus Arthrobacter is discussed, from its first description in 1947 to the present state. Emphasis is given to intrageneric phylogeny and chemotaxonomic characteristics, concentrating on quinone systems, peptidoglycan compositions and polar lipid profiles. Internal groups within the genus Arthrobacter indicated from homogeneous chemotaxonomic traits and corresponding to phylogenetic grouping and/or high 16S rRNA gene sequence similarities are highlighted. Furthermore, polar lipid profiles and quinone systems of selected species are shown, filling some gaps concerning these chemotaxonomic traits. Based on phylogenetic groupings, 16S rRNA gene sequence similarities and homogeneity in peptidoglycan types, quinone systems and polar lipid profiles, a description of the genus Arthrobacter sensu lato and an emended description of Arthrobacter roseus are provided. Furthermore, reclassifications of selected species of the genus Arthrobacter into novel genera are proposed, namely Glutamicibacter gen. nov. (nine species), Paeniglutamicibacter gen. nov. (six species), Pseudoglutamicibacter gen. nov. (two species), Paenarthrobacter gen. nov. (six species) and Pseudarthrobacter gen. nov. (ten species).

  5. Isolation of Arthrobacter species from the phyllosphere and demonstration of their epiphytic fitness

    NARCIS (Netherlands)

    Scheublin, T.R.; Leveau, J.H.J.

    2013-01-01

    Bacteria of the genus Arthrobacter are common inhabitants of the soil environment, but can also be recovered from leaf surfaces (the phyllosphere). Using enrichment cultures on 4-chlorophenol, we succeeded in specifically isolating Arthrobacter bacteria from ground cover vegetation in an apple orcha

  6. The Arthrobacter species FB24 Arth_1007 (DnaB intein is a pseudogene.

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    Kazuo Tori

    Full Text Available An Arthrobacter species FB24 gene (locus tag Arth_1007 was previously annotated as a putative intein-containing DnaB helicase of phage origin (Arsp-FB24 DnaB intein. However, it is not a helicase gene because the sequence similarity is limited to inteins. In fact, the flanking exteins total only 66 amino acids. Therefore, the intein should be referred to as the Arsp-FB24 Arth_1007 intein. The Arsp-FB24 Arth_1007 intein failed to splice in its native precursor and in a model precursor. We previously noted that the Arsp-FB24 Arth_1007 intein is the only putative Class 3 intein that is missing the catalytically essential Cys at position 4 of intein Motif F, which is one of the three defining signature residues of this class. Additionally, a catalytically essential His in position 10 of intein Motif B is also absent; this His is the most conserved residue amongst all inteins. Splicing activity was not rescued when these two catalytically important positions were 'reverted' back to their consensus residues. This study restores the unity of the Class 3 intein signature sequence in active inteins by demonstrating that the Arsp-FB24 Arth_1007 intein is an inactive pseudogene.

  7. Arthrobacter Species as a Prey Cell Reservoir for Nonobligate Bacterial Predators in Soil

    Science.gov (United States)

    1989-01-01

    species as a prey cell reservoir for nonobligate bacterial predators in soil. Can. J. Microbiol. 35 : 559--564, tine investigation at etc entreprise sur...8217 .Stieprom tice ~s species and Bad//uhs instead of’ A. glohifrbrmis. to provide 1 .0 mng/g soil did not nivoie from the soil did not interfecre because

  8. Collective behaviour across animal species.

    Science.gov (United States)

    DeLellis, Pietro; Polverino, Giovanni; Ustuner, Gozde; Abaid, Nicole; Macrì, Simone; Bollt, Erik M; Porfiri, Maurizio

    2014-01-16

    We posit a new geometric perspective to define, detect, and classify inherent patterns of collective behaviour across a variety of animal species. We show that machine learning techniques, and specifically the isometric mapping algorithm, allow the identification and interpretation of different types of collective behaviour in five social animal species. These results offer a first glimpse at the transformative potential of machine learning for ethology, similar to its impact on robotics, where it enabled robots to recognize objects and navigate the environment.

  9. Arthrobacter equi sp. nov., isolated from veterinary clinical material.

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    Yassin, A F; Spröer, C; Siering, C; Hupfer, H; Schumann, P

    2011-09-01

    A Gram-positive-staining, catalase-positive, non-spore-forming, rod-shaped bacterium, strain IMMIB L-1606(T), isolated from genital swabs of a horse, was characterized using a polyphasic approach. Comparative 16S rRNA gene sequence analysis showed that the organism was related to members of the genus Arthrobacter, displaying sequence similarities of 93.5-99.1 % with the type strains of recognized species of the genus. Cell-wall analysis revealed peptidoglycan type A3α L-Lys-L-Ser-L-Thr-L-Ala. DNA-DNA hybridization data and biochemical characterization of strain IMMIB L-1606(T) enabled the isolate to be differentiated genotypically and phenotypically from phylogenetically closely related species of the genus Arthrobacter. Therefore, it is concluded that strain IMMIB L-1606(T) represents a novel species of the genus Arthrobacter, for which the name Arthrobacter equi sp. nov. is proposed. The type strain of Arthrobacter equi sp. nov. is IMMIB L-1606(T) ( = DSM 23395(T) = CCUG 59597(T)).

  10. Trichoderma species collected from Iran

    Institute of Scientific and Technical Information of China (English)

    Doostmorad Zafari

    2004-01-01

    @@ In order to identify Trichoderma species isolated from Iran, Trichoderma selective media and malt extract agar (MEA) were used to isolate Trichoderma species from the soil samples. All the cultures were purified on 2% water agar by hyphal tip method prior to morphological examination.Morphological observations were carried out on the cultures grown on 2% MEA and oat meal agar at 20℃ under ambient laboratory conditions. Macroscopic features of colony and microscopic features of conidiophore, phialid and conidium including position of phialids on conidiophore and shape and size of phialids and conidia were studied and recorded 3-5 days after inoculation. Out of 36 tested isolates, using morphological features and molecular data obtained from ITS1, ITS2 and 5.8S regions fourteen species were identified as follow: T. atroviride, T. ghanense, T. spirale, T. erinaceum, T. citrinoviride, T. saturnisporum,T. longibrachiatum , T. hamatum , T. harzianum, T. inhamatum , T. tomentosum , T.virens, T. asperellum, T. koningii. Among the species T. harzianum and T. virens isolates were the most frequent species. In addition of the mentioned species two Tichoderma sp. were collected from walnut rhizospher that they are not fit to any described species so far. Although one of them are T. brevicumpactum introduced informally.

  11. Arthrobacter pityocampae sp. nov., isolated from Thaumetopoea pityocampa (Lep., Thaumetopoeidae).

    Science.gov (United States)

    İnce, İkbal Agah; Demirbağ, Zihni; Katı, Hatice

    2014-10-01

    A bacterium (strain Tp2(T)) was isolated from a caterpillar of the pine processionary moth, Thaumetopoea pityocampa (Den. & Schiff.) (Lepidoptera: Thaumetopoeidae), a destructive pine forest pest. The bacterium is a Gram-stain-positive, red-pigmented coccus, oxidase-negative, nitrate-reducing, non-motile and non-spore-forming. Strain Tp2(T) was subjected to a taxonomic study using polyphasic approach that included morphological and biochemical characterizations, 16S rRNA gene sequence analysis, DNA-DNA hybridization, DNA G+C content analysis, comparative fatty acid profiles, and analyses of quinones and polar lipids. The 16S rRNA gene sequence of strain Tp2(T) revealed that Arthrobacter agilis DSM 20550(T) was the closest known strain (98% 16S rRNA gene sequence similarity). DNA-DNA hybridization of A. agilis DSM 20550(T) and strain Tp2(T) resulted in a DNA-DNA relatedness value of 11.9% (20.2% reciprocal). The DNA base composition of strain Tp2(T) was 69.5 mol%, which is consistent with the other recognized members of Actinobacteria that have a high G+C content in their genome. The polar lipid pattern of strain Tp2(T) consisted of diphosphatidylglycerol (major), phosphatidylglycerol and phosphatidylinositol and unknown glycolipids. The cellular fatty acids were anteiso C15:0 and anteiso C17:0 and the major menaquinone was MK-9(II-H2). The peptidoglycan type was A3α with an L-Lys-L-Thr-L-Ala3 interpeptide bridge. The above-mentioned characterization qualifies strain Tp2(T) as genotypically and phenotypically distinct from closely related species of the genus Arthrobacter with validly published names. Strain Tp2(T) is therefore proposed to represent a novel species of the genus Arthrobacter, described as Arthrobacter pityocampae sp. nov. The type strain is Tp2(T) ( = DSM 21719(T) = NCCB 100254(T)).

  12. Arthrobacter cupressi sp. nov., an actinomycete isolated from the rhizosphere soil of Cupressus sempervirens.

    Science.gov (United States)

    Zhang, Jian; Ma, Yuchao; Yu, Huimin

    2012-11-01

    An actinobacterial strain, designated D48(T), was isolated from the rhizosphere soil of a cypress tree collected from Mianyang in Sichuan province, China. The strain was Gram-stain-positive, catalase-positive, oxidase-negative and non-motile, with lysine as the peptidoglycan diagnostic diamino acid and acetyl as the peptidoglycan acyl type. The predominant menaquinone was MK-9(H(2)); small amounts of MK-7(H(2)), MK-10(H(2)) and MK-6 were also present. The major fatty acids were anteiso-C(15:0), anteiso-C(17:0) and iso-C(16:0). The isolate underwent a rod-coccus morphological cycle, had a high DNA G+C content, was aerobic and grew between 12 and 37 °C (optimum, 28 °C). On the basis of the phenotypic and chemotaxonomic analyses, 16S rRNA gene sequence comparisons and DNA-DNA hybridization data, the isolate represents a novel species of the genus Arthrobacter, for which the name Arthrobacter cupressi sp. nov. is proposed. The type strain is D48(T) (=DSM 24664(T)=CGMCC 1.10783(T)).

  13. Reclassification of Arthrobacter sanguinis (Mages et al. 2009) as Haematomicrobium sanguinis gen. nov., comb. nov.

    Science.gov (United States)

    Schumann, Peter; Busse, Hans-Jürgen

    2016-12-29

    Due to its separate position within the genus Arthrobacter in many published phylogenetic trees and its incomplete chemotaxonomic characterization the type strain of Arthrobacter sanguinis was subjected to analysis of its chemotaxonomic traits including quinone system, polar lipid profile, peptidoglycan structure and fatty acid profile. The fatty acid profile consisted of the major compounds (>10 %) iso-C15:0, anteiso-C15:0 and anteiso-C17:0. It showed a quinone system with the predominating menaquinone MK-9(H2). Both, fatty acid profile and quinone system are in line with the description of the genus Arthrobacter. The peptidoglycan type was L-Lys - L-Ala - Gly (A11.50) which is unique within the genus Arthrobacter sensu lato and also among Arthrobacter species recently reclassified in the genera Sinomonas, Paenarthrobacter and Pseudarthrobacter. The polar lipid profile was very complex and unique among the group of taxa in containing relatively high proportions of several unidentified lipids. In conclusion from its phylogenetic position and its chemotaxonomic distinguishability from related taxa here the reclassification of A. sanguinis in a new genus and species, Haematomicrobium sanguinis gen. nov., comb. nov, is proposed. The type strain is 741T (=CCUG 46407T=DSM 21259T).

  14. The arthrobacter arilaitensis Re117 genome sequence reveals its genetic adaptation to the surface of cheese.

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    Christophe Monnet

    Full Text Available Arthrobacter arilaitensis is one of the major bacterial species found at the surface of cheeses, especially in smear-ripened cheeses, where it contributes to the typical colour, flavour and texture properties of the final product. The A. arilaitensis Re117 genome is composed of a 3,859,257 bp chromosome and two plasmids of 50,407 and 8,528 bp. The chromosome shares large regions of synteny with the chromosomes of three environmental Arthrobacter strains for which genome sequences are available: A. aurescens TC1, A. chlorophenolicus A6 and Arthrobacter sp. FB24. In contrast however, 4.92% of the A. arilaitensis chromosome is composed of ISs elements, a portion that is at least 15 fold higher than for the other Arthrobacter strains. Comparative genomic analyses reveal an extensive loss of genes associated with catabolic activities, presumably as a result of adaptation to the properties of the cheese surface habitat. Like the environmental Arthrobacter strains, A. arilaitensis Re117 is well-equipped with enzymes required for the catabolism of major carbon substrates present at cheese surfaces such as fatty acids, amino acids and lactic acid. However, A. arilaitensis has several specificities which seem to be linked to its adaptation to its particular niche. These include the ability to catabolize D-galactonate, a high number of glycine betaine and related osmolyte transporters, two siderophore biosynthesis gene clusters and a high number of Fe(3+/siderophore transport systems. In model cheese experiments, addition of small amounts of iron strongly stimulated the growth of A. arilaitensis, indicating that cheese is a highly iron-restricted medium. We suggest that there is a strong selective pressure at the surface of cheese for strains with efficient iron acquisition and salt-tolerance systems together with abilities to catabolize substrates such as lactic acid, lipids and amino acids.

  15. Inferring species decline from collection records

    DEFF Research Database (Denmark)

    Carpaneto, Giuseppe Maria; Mazziotta, Adriano; Valerio, Laura

    2007-01-01

    The decline of roller dung beetles (Coleoptera, Scarabaeidae) in Italy, at national and regional level, was described using a database of both literature and unpublished data, since the late of 19th century. The probability of finding roller species was assessed for each decade of the 20th century...... UTM cells dropped by 23%. Six roller species showed a significant decline in Italy from the first to the second part of the 20th century, and nine in the last 30years. Other two species disappeared from the majority of the northern regions. Finally, the values of all the extinction indexes were...... strongly correlated and detected a high risk of extinction in Italy for six species. A gradual change in land use during the last three decades, consisting of a reduced extension of grasslands in favour of either intensive agriculture or reforestation after abandonment of livestock raising, was likely...

  16. Inferring species decline from collection records

    DEFF Research Database (Denmark)

    Carpaneto, Giuseppe Maria; Mazziotta, Adriano; Valerio, Laura

    2007-01-01

    increased clearly as a consequence of the escalation of entomological surveys. Nevertheless, comparing R species (rollers) with all the scarab dung beetles from the first to the last quarter of the 20th century, the relative frequency of roller records decreased by 31%, while the relative number of occupied......The decline of roller dung beetles (Coleoptera, Scarabaeidae) in Italy, at national and regional level, was described using a database of both literature and unpublished data, since the late of 19th century. The probability of finding roller species was assessed for each decade of the 20th century...... UTM cells dropped by 23%. Six roller species showed a significant decline in Italy from the first to the second part of the 20th century, and nine in the last 30years. Other two species disappeared from the majority of the northern regions. Finally, the values of all the extinction indexes were...

  17. Bacteremia Due to Arthrobacter creatinolyticus in an Elderly Diabetic Man with Acute Cholangitis.

    Science.gov (United States)

    Yamamoto, Kei; Hayakawa, Kayoko; Nagamatsu, Maki; Fujiya, Yoshihiro; Mawatari, Momoko; Kutsuna, Satoshi; Takeshita, Nozomi; Tamura, Saeko; Mezaki, Kazuhisa; Ohmagari, Norio

    2017-03-24

    An 87-year-old man with poorly controlled diabetic mellitus presented with fever, bedsores, and elevated hepatobiliary enzyme levels. He was diagnosed with bacteremia with acute cholangitis due to Arthrobacter species, which are Gram-positive, aerobic, catalase-positive, coryneform bacteria belonging to the family Microbacteriaceae. Doripenem and subsequencial sulbactam/ampicillin treatment were used for the acute cholangitis, and the bacteremia was treated with a 2-week course of vancomycin. The bacteremia was misidentified by the phenotyping assay (API Coryne test), but was identified as Arthrobacter creatinolyticus by 16S rRNA and matrix-assisted laser-desorption/ionization time-of-flight mass spectrometry. To our knowledge, this is the first report of a human case of A. creatinolyticus bacteremia.

  18. Agaritine content of 53 Agaricus species collected from nature

    DEFF Research Database (Denmark)

    Schulzova, V.; Hajslova, J.; Peroutka, R.

    2009-01-01

    carcinogen. There was a huge variation in agaritine content between species, but less variation between samples of a species. Whereas the cultivated mushroom Agaricus bisporus commonly contain 200-500 mg agaritine kg-1 fresh weight, no less than 24 of the 53 species contained agaritine levels above 1000 mg......Fifty-three different species of the genus Agaricus were collected in the Czech Republic during the period 1998-2001 and identified by an experienced mycologist. The samples were analysed for agaritine (N2-(-L-glutamyl)-4-hydroxymethylphenylhydrazine) content, a precursor to a suspected rodent...... strain development of Agaricus mushrooms for cultivation. No correlation could be observed between agaritine content and size of the mushroom, week of the year when collected, year of collection, or site of collection. Besides occurring in the genus Agaricus, some species of the genera Leucoagaricus...

  19. Erythema caused by a localised skin infection with Arthrobacter mysorens

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    Chakraborty Trinad

    2010-12-01

    Full Text Available Abstract Background Skin erythemas of unknown origin are a frequent reason for consulting the general practitioner or dermatologist. Case presentation Here we report a case of an erythema resembling the erythema migrans manifestation of Lyme disease, but with atypical symptoms like persistent pruritus. The patient had no history of a recent tick-bite but displayed a positive serology for an advanced stage of Lyme borreliosis, which stood in contrast to the clinical manifestation of erythema migrans as a symptom of early Lyme disease. Three skin swabs and soil samples, collected in the area where the patient possibly acquired the infection, were examined by bacterial and fungal culture methods. Microorganisms were identified by using 16 S rRNA gene sequencing and bioinformatics. The patient and soil isolates were compared by employing RAPD analysis. The serum samples of the patient were examined by immunoblotting. Arthrobacter mysorens, a soil bacterium, was isolated from the collected skin and soil samples. The identity of both isolates was determined by molecular fingerprinting methods. A. mysorens was proven to be causative for the erythema by direct isolation from the affected skin and a positive serology, thus explaining the atypical appearance of the erythema compared to erythema migrans caused by Borrelia infection. Conclusions Infections with A.mysorens might be underreported and microbiological diagnostic techniques should be applied in cases of patients with unclear erythemas, resembling erythema migrans, without a history of tick bites.

  20. Mineralization of melamine and cyanuric acid as sole nitrogen source by newly isolated Arthrobacter spp. using a soil-charcoal perfusion method.

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    Hatakeyama, Takashi; Takagi, Kazuhiro; Yamazaki, Kenichi; Sakakibara, Futa; Ito, Koji; Takasu, Eiichi; Naokawa, Takuji; Fujii, Kunihiko

    2015-05-01

    Melamine belongs to the s-triazine family, and industrially used as raw product in many ways all over the world. Melamine has been reported for human harmful effects and detected from some crops, soil and water. To remove melamine from the polluted environment, the efficient melamine-mineralizing microorganisms have been needed. We newly isolated three melamine-degrading bacteria from the same upland soil sample using soil-charcoal perfusion method. These bacteria were classified as Arthrobacter sp. MCO, Arthrobacter sp. CSP and Microbacterium sp. ZEL by 16S rRNA genes sequencing analysis. Both Arthrobacter species completely degraded melamine within 2 days, and consumed melamine as a sole nitrogen source. Both strains also grew in cyanuric acid as sole nitrogen source, and released small quantities of ammonium ions. These strains are the first identified bacteria that can mineralize both melamine and cyanuric acid as sole initial nitrogen source in Arthrobacter sp. Although ammeline and ammelide intermediates were detected, these strains possess none of the known genes encoding melamine degrading enzymes. Since the Arthrobacter strains also degraded melamine in a high pH liquid medium, they present as potential bioremediation agents in melamine-polluted environments.

  1. Arthrobacter P 1, a Fast Growing Versatile Methylotroph with Amine Oxidase as a Key Enzyme in the Metabolism of Methylated Amines

    NARCIS (Netherlands)

    Dijken, J.P. van; Veenhuis, M.; Harder, W.

    1981-01-01

    A facultative methylotrophic bacterium was isolated from enrichment cultures containing methylamine as the sole carbon source. It was tentatively identified as an Arthrobacter species. Extracts of cells grown on methylamine or ethylamine contained high levels of amine oxidase (E.C. 1.4.3) activity.

  2. Cloning and sequencing of the trpE gene from Arthrobacter globiformis ATCC 8010 and several related subsurface Arthrobacter isolates

    Energy Technology Data Exchange (ETDEWEB)

    Chernova, T.; Viswanathan, V.K.; Austria, N.; Nichols, B.P.

    1998-09-01

    Tryptophan dependent mutants of Arthrobacter globiformis ATCC 8010 were isolated and trp genes were cloned by complementation and marker rescue of the auxotrophic strains. Rescue studies and preliminary sequence analysis reveal that at least the genes trpE, trpC, and trpB are clustered together in this organism. In addition, sequence analysis of the entire trpE gene, which encodes component I of anthranilate synthase, is described. Segments of the trpE gene from 17 subsurface isolates of Arthrobacter sp. were amplified by PCR and sequenced. The partial trpE sequences from the various strains were aligned and subjected to phylogenetic analysis. The data suggest that in addition to single base changes, recombination and genetic exchange play a major role in the evolution of the Arthrobacter genome.

  3. Flowering Tendencies in Strawberry Species in the USDA Collection

    Science.gov (United States)

    The U.S. Department of Agriculture, National Clonal Germplasm Repository (NCGR), Corvallis, Oregon, maintains a national genebank for strawberry, Fragaria L. This collection includes diverse species maintained in screenhouses. The plants are exposed to an annual temperature regime that allows flower...

  4. Improving Remote Species Identification through Efficient Training Data Collection

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    Claire A. Baldeck

    2014-03-01

    Full Text Available Plant species identification and mapping based on remotely-sensed spectral signatures is a challenging task with the potential to contribute enormously to ecological studies. Success in this task rests upon the appropriate collection and use of costly field-based training data, and researchers are in need of ways to improve collection efficiency based on quantitative evidence. Using imaging spectrometer data collected by the Carnegie Airborne Observatory for hundreds of field-identified tree crowns in Kruger National Park, South Africa, we developed woody plant species classification models and evaluated how classification accuracy increases with increasing numbers of training crowns. First, we show that classification accuracy must be estimated while respecting the crown as the basic unit of data; otherwise, accuracy will be overestimated and the amount of training data needed to perform successful classification will be underestimated. We found that classification accuracy and the number of training crowns needed to perform successful classification varied depending on the number and spectral separability of species in the model. We also used a modified Michaelis-Menten function to describe the empirical relationship between training crowns and model accuracy, and show how this function may be useful for predicting accuracy. This framework can assist researchers in designing field campaigns to maximize the efficiency of field data collection, and thus the amount of biodiversity information gained from remote species identification models.

  5. Molecular characterization of some lignicolous species from fungal culture collection

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    Stević Nevena

    2014-01-01

    Full Text Available Culture collections of microorganisms, including fungi, are strain deposits recognised as Biological Resource Centers (BRCs with a great importance in science, industry and education. Their objective is to preserve the purity, viability and genomic integrity of every single strain as a member of such collection. Since improvement of molecular methods nowadays brought many novel approaches in manipulation with strains of microorganisms, they can also be useful for characterization of existing stored strains. ITS1 region in nuclear DNA is preferred barcoding marker for taxon identification, which can be explained by its great inter-species variability. This paper presents results from analysing ITS1 region sequences (17 obtained from fungal DNA of culture collection of autochthonous, lignicolous genera Piptoporus, Pleurotus, Ganoderma and Schizophyllum cultured on malt agar plates for 14 days at 25°C. BLAST (Basic Local Alignment Search Tool was used for comparison with online databases, while alignment of sequences was made with MEGA 5.10 software. Morphological determination of species or genus was confirmed for 13 cultures, while the others were disproved. The resulting alignment indicated small intra-species variability of ITS1 region and pointed to it as an ideal marker for verification of fungal culture collections' authenticity. [Projekat Ministarstva nauke Republike Srbije, br. III43002 and by the Provincial Secretariat for Science and Technological Development, Vojvodina, Serbia APV 114-4513592/2013-03: Molecular and phenotypic diversity of taxa of economical and epidemiological importance, and endangered and endemic species in Europe

  6. Rickettsia species in fleas collected from small mammals in Slovakia.

    Science.gov (United States)

    Špitalská, Eva; Boldiš, Vojtech; Mošanský, Ladislav; Sparagano, Olivier; Stanko, Michal

    2015-11-01

    Epidemiological and epizootiological studies of Rickettsia felis and other Rickettsia spp. are very important, because their natural cycle has not yet been established completely. In total, 315 fleas (Siphonaptera) of 11 species of Ceratophyllidae, Hystrichopsyllidae and Leptopsyllidae families were tested for the presence of Rickettsia species and Coxiella burnetii with conventional and specific quantitative real-time PCR assays. Fleas were collected from five rodent hosts (Myodes glareolus, Apodemus flavicollis, Apodemus agrarius, Microtus subterraneus, Microtus arvalis) and three shrew species (Sorex araneus, Neomys fodiens, Crocidura suaveolens) captured in Eastern and Southern Slovakia. Overall, Rickettsia spp. was found in 10.8% (34/315) of the tested fleas of Ctenophthalmus agyrtes, Ctenophthalmus solutus, Ctenophthalmus uncinatus and Nosopsyllus fasciatus species. Infected fleas were coming from A. flavicollis, A. agrarius, and M. glareolus captured in Eastern Slovakia. C. burnetii was not found in any fleas. R. felis, Rickettsia helvetica, unidentified Rickettsia, and rickettsial endosymbionts were identified in fleas infesting small mammals in the Košice region, Eastern Slovakia. This study is the first report of R. felis infection in C. solutus male flea collected from A. agrarius in Slovakia.

  7. Wide Distribution of Closely Related, Antibiotic-Producing Arthrobacter Strains throughout the Arctic Ocean

    DEFF Research Database (Denmark)

    Wietz, Matthias; Månsson, Maria; Bowman, Jeff S.

    2012-01-01

    We isolated 16 antibiotic-producing bacterial strains throughout the central Arctic Ocean, including seven Arthrobacter spp. with almost identical 16S rRNA gene sequences. These strains were numerically rare, as revealed using 454 pyrosequencing libraries. Arthrobacter spp. produced arthrobacilins...

  8. Arthrobacter enclensis sp. nov., isolated from sediment sample

    Digital Repository Service at National Institute of Oceanography (India)

    Dastager, S.G.; Qin, L.; Tang, S.K.; Krishnamurthi, S.; Lee, J.C.; Li, W.J.

    , genomic DNA was extracted and purified according to the method of Mar- mur (1961) with additional RNAse treatment. DNA–DNA hybridization was carried out based on principles and equa- tions described by De Ley et al. (1970) under the consid- eration.... Chin J Oceanol Lim- nol 26:166–177 De Ley J, Cattoir H, Reynaerts A (1970) The quantitative measure- ment of DNA hybridization from renaturation rates. Eur J Bio- chem 12:133–142 Ding L, Hirose T, Yokota A (2009) Four novel Arthrobacter spe- cies...

  9. 76 FR 7546 - Proposed Information Collection; Comment Request; Prohibited Species Donation (PSD) Program

    Science.gov (United States)

    2011-02-10

    ...; Prohibited Species Donation (PSD) Program AGENCY: National Oceanic and Atmospheric Administration (NOAA... currently approved information collection. A prohibited species donation (PSD) program for Pacific salmon.... Vessels and processing plants participating in the donation program voluntarily retain and process...

  10. Three new rarely collected or endangered species of Annonaceae from Venezuela

    NARCIS (Netherlands)

    Chatrou, L.W.; Pirie, M.D.

    2005-01-01

    Three new species of Annonaceae from Venezuela are described here: Cremastosperma venezuelanum Pirie, Klarobelia subglobosa Chatrou, and Pseudomalmea wingfieldii Chatrou. All three are represented by few collections (in comparison to those of other Neotropical species of Annonaceae). Klarobelia subg

  11. Adhesion of an Amylolytic Arthrobacter sp. to Starch-Containing Plastic Films

    OpenAIRE

    1990-01-01

    Cells of the amylolytic bacterium KB-1 (thought to be an Arthrobacter sp.) adhered (∼70%) to the surface of plastic films composed of starch-poly (methylacrylate) graft copolymer (starch-PMA), but did not adhere (

  12. Degradation of Swainsonine by the NADP-Dependent Alcohol Dehydrogenase A1R6C3 in Arthrobacter sp. HW08

    Directory of Open Access Journals (Sweden)

    Yan Wang

    2016-05-01

    Full Text Available Swainsonine is an indolizidine alkaloid that has been found in locoweeds and some fungi. Our previous study demonstrated that Arthrobacter sp. HW08 or its crude enzyme extract could degrade swainsonie efficiently. However, the mechanism of swainsonine degradation in bacteria remains unclear. In this study, we used label-free quantitative proteomics method based on liquid chromatography-electrospray ionization-tandem mass spectrometry to dissect the mechanism of swainsonine biodegradation by Arthrobacter sp. HW08. The results showed that 129 differentially expressed proteins were relevant to swainsonine degradation. These differentially expressed proteins were mostly related to the biological process of metabolism and the molecular function of catalytic activity. Among the 129 differentially expressed proteins, putative sugar phosphate isomerase/epimerase A1R5X7, Acetyl-CoA acetyltransferase A0JZ95, and nicotinamide adenine dinucleotide phosphate (NADP-dependent alcohol dehydrogenase A1R6C3 were found to contribute to the swainsonine degradation. Notably, NADP-dependent alcohol dehyrodgenase A1R6C3 appeared to play a major role in degrading swainsonine, but not as much as Arthrobacter sp. HW08 did. Collectively, our findings here provide insights to understand the mechanism of swainsonine degradation in bacteria.

  13. Biodegradation of 2-methyl, 2-ethyl, and 2-hydroxypyridine by an Arthrobacter sp. isolated from subsurface sediment.

    Science.gov (United States)

    O'Loughlin, E J; Sims, G K; Traina, S J

    1999-04-01

    A bacterium capable of degrading 2-methylpyridine was isolated by enrichment techniques from subsurface sediments collected from an aquifer located at an industrial site that had been contaminated with pyridine and pyridine derivatives. The isolate, identified as an Arthrobacter sp., was capable of utilizing 2-methylpyridine, 2-ethylpyridine, and 2-hydroxypyridine as primary C, N, and energy sources. The isolate was also able to utilize 2-, 3-, and 4-hydroxybenzoate, gentisic acid, protocatechuic acid and catechol, suggesting that it possesses a number of enzymatic pathways for the degradation of aromatic compounds. Degradation of 2-methylpyridine, 2-ethylpyridine, and 2-hydroxypyridine was accompanied by growth of the isolate and release of ammonium into the medium. Degradation of 2-methylpyridine was accompanied by overproduction of riboflavin. A soluble blue pigment was produced by the isolate during the degradation of 2-hydroxypyridine, and may be related to the diazadiphenoquinones reportedly produced by other Arthrobacter spp. when grown on 2-hydroxypyridine. When provided with 2-methylpyridine, 2-ethylpyridine, and 2-hydroxypyridine simultaneously, 2-hydroxypyridine was rapidly and preferentially degraded; however there was no apparent biodegradation of either 2-methylpyridine or 2-ethylpyridine until after a seven day lag. The data suggest that there are differences between the pathway for 2-hydroxypyridine degradation and the pathways(s) for 2-methylpyridine and 2-ethylpyridine.

  14. Degradation of the Phosphonate Herbicide Glyphosate by Arthrobacter atrocyaneus ATCC 13752

    OpenAIRE

    Pipke, Rüdiger; Amrhein, Nikolaus

    1988-01-01

    Of nine authentic Arthrobacter strains tested, only A. atrocyaneus ATCC 13752 was capable of using the herbicide glyphosate [N-(phosphonomethyl)glycine] as its sole source of phosphorus. Contrary to the previously isolated Arthrobacter sp. strain GLP-1, which degrades glyphosate via sarcosine, A. atrocyaneus metabolized glyphosate to aminomethylphosphonic acid. The carbon of aminomethylphosphonic acid was entirely converted to CO2. This is the first report on glyphosate degradation by a bacte...

  15. Combined bioremediation of atrazine-contaminated soil by Pennisetum and Arthrobacter sp. strain DNS10.

    Science.gov (United States)

    Zhang, Ying; Ge, Shijie; Jiang, Mingyue; Jiang, Zhao; Wang, Zhigang; Ma, Bingbing

    2014-05-01

    Strain DNS10 was isolated from the black soil collected from the northeast of China which had been cultivated with atrazine as the sole nitrogen source. Pennisetum is a common plant in Heilongjiang Province of China. The main objective of this paper was to evaluate the efficiency of plant-microbe joint interactions (Arthrobacter sp. DNS10 + Pennisetum) in atrazine degradation compared with single-strain and single-plant effects. Plant-microbe joint interactions degraded 98.10 % of the atrazine, while single strain and single plant only degraded 87.38 and 66.71 % after a 30-day experimental period, respectively. The results indicated that plant-microbe joint interactions had a better degradation effect. Meanwhile, we found that plant-microbe joint interactions showed a higher microbial diversity. The results of microbial diversity illustrated that the positive effects of cropping could improve soil microbial growth and activity. In addition, we planted atrazine-sensitive plants (soybean) in the soil after repair. The results showed that soybean growth in soil previously treated with the plant-microbe joint interactions treatment was better compared with other treatments after 20 days of growth. This was further proved that the soil is more conducive for crop cultivation. Hence, plant-microbe joint interactions are considered to be a potential tool in the remediation of atrazine-contaminated soil.

  16. Degradation of 4-chlorobenzoic acid by Arthrobacter sp

    Energy Technology Data Exchange (ETDEWEB)

    Marks, T.S.; Smith, A.R.W.; Quirk, A.V.

    1984-11-01

    A mixed population, enriched and established in a defined medium, from a sewage sludge inoculum was capable of complete mineralization of 4-chlorobenzoate. An organism, identified as Arthrobacter sp., was isolated from the consortium and shown to be capable of utilizing 4-chlorobenzoate as the sole carbon and energy source in pure culture. This organism (strain TM-1), dehalogenated 4-chlorobenzoate as the initial step in the degradative pathway. The production, 4-hydroxybenzoate, was further metabolized via protocatechuate. The ability of strain TM-1 to degrade 4-chlorobenzoate in liquid medium at 25/sup 0/C was improved by the use of continuous culture and repeated sequential subculturing. Other chlorinated benzoates and the parent compound benzoate did not support growth of strain TM-1. An active cell extract was prepared and shown to dehalogenate 4-chloro-, 4-fluoro-, and 4-bromobenzoate. Dehalogenase activity had an optimum pH of 6.8 and an optimum temperature of 20/sup 0/C and was inhibited by dissolved oxygen and stimulated by manganese (Mn/sup 2 +/). Strain improvement resulted in an increase in the specific activity of the cell extract from 0.09 to 0.85 nmol of 4-hydroxybenzoate per min per mg of protein and a decrease in the doubling time of the organism from 50 to 1.6 h. 18 references, 3 figures, 2 tables.

  17. Crystallization and X-ray diffraction analysis of nylon hydrolase (NylC) from Arthrobacter sp. KI72.

    Science.gov (United States)

    Nagai, Keisuke; Yasuhira, Kengo; Tanaka, Yusuke; Kato, Dai-ichiro; Takeo, Masahiro; Higuchi, Yoshiki; Negoro, Seiji; Shibata, Naoki

    2013-10-01

    Nylon hydrolase (NylC) encoded by Arthrobacter plasmid pOAD2 (NylCp2) was expressed in Escherichia coli JM109 and purified by ammonium sulfate fractionation, anion-exchange column chromatography and gel-filtration chromatography. NylCp2 was crystallized by the sitting-drop vapour-diffusion method with ammonium sulfate as a precipitant in 0.1 M HEPES buffer pH 7.5 containing 0.2 M NaCl and 25% glycerol. Diffraction data were collected from the native crystal to a resolution of 1.60 Å. The obtained crystal was spindle shaped and belonged to the C-centred orthorhombic space group C2221, with unit-cell parameters a=70.84, b=144.90, c=129.05 Å. A rotation and translation search gave one clear solution containing two molecules per asymmetric unit.

  18. Potential Risk of Hybridization in Ex Situ Collections of Two Endangered Species of Sinojackia Hu (Styracaceae)

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    Spontaneous hybridization in ex situ facilities can undermine the genetic integrity of ex situ collections and potentially contaminate open-pollinated seeds or seedlings destined for the reintroduction of endangered plant species into the wild. In the present study, the potential risk of hybridization between two endangered Chinese endemic species, namely Sinojackia xylocarpa Hu and S. rehderiana Hu, which are naturally allopatric species but were conserved ex situ in Wuhan Botanical Garden (WBG), Wuhan, China, were investigated over three consecutive years from 2003 to 2005. The entire overlapping flowering period of the two species was 14-20 d and the two species shared the same pollinator insects during the entire flowering season in WBG. The floral isolation between the two species was not an issue in the ex situ collection at WBG. The results suggest an opportunity for pollen transfer between species and a potential risk of genetic introgression and loss of genetic identity of open-pollinated seeds produced in the ex situ collection of these two endangered species. An artificial reciprocal cross between S. xylocarpa and S. rehderiana confirmed that the two congener species could readily set seeds, indicating no post-pollination barriers to hybridization and the importance of spatial isolation as a barrier to inter-specific crossing. Therefore, to manage these crossable species with overlapping flowering times and shared pollination vectors in ex situ facilities, spatial isolation should be carefully considered to minimize the possibility of spontaneous hybridization.

  19. Application of NAA Method to Study Chromium Uptake by Arthrobacter oxydans

    CERN Document Server

    Tsibakhashvili, N Ya; Kalabegishvili, T L; Kirkesali, E I; Frontasyeva, M V; Pomyakushina, E V; Pavlov, S S

    2002-01-01

    To study chromium uptake by Arthrobacter oxydans (Cr(VI)-reducer bacteria isolated from Columbia basalt rocks, USA) instrumental neutron activation analysis method was applied. It was established that chromate accumulation is dose-dependent and it is more intesive in the interval of concentrations of Cr(VI) (10-50 mg/l). At low concentrations of Cr(VI) (up to 50 mg/l) the most intensive formation of Cr(V) was also found (using ESR method). Besides, it was estimated that reduction from Cr(VI) to Cr(V) is faster process than the uptake of Cr(VI). According to ENAA measurements Cr(III), in constant to Cr(VI), is not accumulated in Arthrobacter oxydans cells up to concentration of 200 mg/l. Using epithermal neutron activation analysis the background levels of 17 major, minor and trace elements were determined in Arthrobacter oxydans.

  20. On the parasitic fauna of two species of anurans collected from Sungai Pinang, Penang Island, Malaysia.

    Science.gov (United States)

    Wahab, A R; Andy Tan, W A; Intan, S

    2008-08-01

    A total of fifty anurans, comprising of Rana limnocharis and Bufo melanostictus were collected from Sungai Pinang, Balik Pulau, Penang. The prevalence, mean intensity and distribution of parasite species along the digestive tract were reported. Seven species of parasites were recorded. Blood parasites recovered were trypansomes and microfilariae.

  1. Noteworthy lichen species in Poland collected in the Świętokrzyski National Park

    Directory of Open Access Journals (Sweden)

    Anna Łubek

    2014-08-01

    Full Text Available In this paper 25 species of the lichens new to the Świętokrzyski National Park are presented on the basis of recent collection and revision of the herbarial material from this arc. Some of these species are new to the Świętokrzykie Mountains and one have not been recorded in Poland so far.

  2. CONTRIBUTIONS TO THE KNOWLEDGE OF THE STRUCTURE, DYNAMICS AND ECOLOGICAL PARAMETERS OF COLLECTED SPECIES OF INVERTEBRATES IN PLUM ORCHARDS

    Directory of Open Access Journals (Sweden)

    Mihai Tălmaciu

    2016-07-01

    Full Text Available The paper presents the results of the observations made in a plum fruit growing plantation in the years 2013 and 2014, belonging Teaching Station Vasile Adamachi within USAMV, Iasi County, at the Stanley variety. The material gathering it was made using soil traps type Barber, from May until August, at intervals between 10 and 20 days. The collection of 2013 was made on the following dates: 30.05, 15.06, 28.06, 12.07, 26.07, 10.08 and 24.08. In total 2013 were collected 151 species belonging to 19 species (taxa. The species (taxa with the largest number of species collected were Heteroptera species (bedbugs with 28 species, Dermestes laniarius L. with 27 species, Coccinella septempunctata L. with 27 species, Polydrosus sericeus Schall. with 15 species and Harpalus calceatus Duft. with 11 species. The collection of biological material in 2014 was made on the following dates: 19.05, 10.06, 29.06, 16.07, 06.08. In total in 2014 it was collected 402 species belonging to 29 species (taxa. The species (taxa with the largest number of species collected were Pseudophonus rufipes De Geer with 86 species, Harpalus distinguendus Duft. 68 species, Pseudephonus griseus Payk. 38 species, Orthoptera (locusts species with 33 species and Hymenoptera (ants species with 20 species.

  3. Collective decision making and social interaction rules in mixed-species flocks of songbirds.

    Science.gov (United States)

    Farine, Damien R; Aplin, Lucy M; Garroway, Colin J; Mann, Richard P; Sheldon, Ben C

    2014-09-01

    Associations in mixed-species foraging groups are common in animals, yet have rarely been explored in the context of collective behaviour. Despite many investigations into the social and ecological conditions under which individuals should form groups, we still know little about the specific behavioural rules that individuals adopt in these contexts, or whether these can be generalized to heterospecifics. Here, we studied collective behaviour in flocks in a community of five species of woodland passerine birds. We adopted an automated data collection protocol, involving visits by RFID-tagged birds to feeding stations equipped with antennae, over two winters, recording 91 576 feeding events by 1904 individuals. We demonstrated highly synchronized feeding behaviour within patches, with birds moving towards areas of the patch with the largest proportion of the flock. Using a model of collective decision making, we then explored the underlying decision rule birds may be using when foraging in mixed-species flocks. The model tested whether birds used a different decision rule for conspecifics and heterospecifics, and whether the rules used by individuals of different species varied. We found that species differed in their response to the distribution of conspecifics and heterospecifics across foraging patches. However, simulating decisions using the different rules, which reproduced our data well, suggested that the outcome of using different decision rules by each species resulted in qualitatively similar overall patterns of movement. It is possible that the decision rules each species uses may be adjusted to variation in mean species abundance in order for individuals to maintain the same overall flock-level response. This is likely to be important for maintaining coordinated behaviour across species, and to result in quick and adaptive flock responses to food resources that are patchily distributed in space and time.

  4. Potential Degradation of Swainsonine by Intracellular Enzymes of Arthrobacter sp. HW08

    Directory of Open Access Journals (Sweden)

    Haili Li

    2013-11-01

    Full Text Available Swainsonine (SW is a toxin produced by locoweeds and harmful to the livestock industry. Degrading SW by Arthrobacter sp. HW08 was demonstrated as a promising way to deal with SW poisoning. However, it is unknown which part of the subcellular enzymes in Arthrobacter sp. HW08 is responsible for biodegrading SW and whether the metabolites are atoxic. In this study, intracellular and extracellular enzymes of Arthrobacter sp. HW08 were isolated and their enzyme activity was evaluated. The metabolites were fed to mice, and physiological and histological properties of the treated mice were investigated. The results showed that only intracellular enzyme of Arthrobacter sp. HW08 (IEHW08 could degrade SW efficiently. Compared with mice in SW treatment group, mice in SW + IEHW08 treatment group (1 increased their body weights; (2 showed higher number of platelets and lower number of white blood cells; (3 decreased the levels of creatinine, urea nitrogen, alanine transaminase and aspartate aminotransferase in serum; (4 reduced the number of vacuolated cells in cerebellum, liver and kidney. All these data demonstrate that IEHW08 was potentially safe for mice, while keeping the capacity of degrading SW. This study indicates a possible application of IEHW08 as an additive in the livestock industry to protect animals from SW poisoning.

  5. Biodegradation kinetics of 4-fluorocinnamic acid by a consortium of Arthrobacter and Ralstonia strains

    NARCIS (Netherlands)

    Hasan, Syed A.; Wietzes, Piet; Janssen, Dick B.

    2012-01-01

    Arthrobacter sp. strain G1 is able to grow on 4-fluorocinnamic acid (4-FCA) as sole carbon source. The organism converts 4-FCA into 4-fluorobenzoic acid (4-FBA) and utilizes the two-carbon side-chain for growth with some formation of 4-fluoroacetophenone as a dead-end side product. We also have isol

  6. Arthrobacter luteus restriction endonuclease cleavage map of X174 RF DNA

    NARCIS (Netherlands)

    Vereijken, J.M.; Mansfeld, A.D.M. van; Baas, P.D.; Jansz, H.S.

    1975-01-01

    Cleavage of X174 RF DNA with the restriction endonuclease from Arthrobacter luteus (Alu I) produces 23 fragments of approximately 24–1100 base pairs in length. The order of most of these fragments has been established by digestion of Haemophilus influenzae Rd (Hind II) and Haemophilus aegyptius (Hae

  7. CLONING AND CHARACTERIZATION OF THE PHTHALATE CATABOLISM REGION OF PRE1 OF ARTHROBACTER KEYSERI 12B

    Science.gov (United States)

    o-Phthalate (benzene-1,2-dicarboxylate) is a central intermediate in the bacterial degradation of phthalate ester plasticizers as well as of a number of fused-ring polycyclic aromatic hydrocarbons found in fossil fuels. In Arthrobacter keyseri 12B, the genes encoding catabolism o...

  8. Pollen grain traits of oil species from the Novi Sad collection

    Directory of Open Access Journals (Sweden)

    Atlagić Jovanka

    2009-01-01

    Full Text Available The collection of oil species in Novi Sad contains 12 species represented with 1-4 cultivars or landraces. In the continuous work on this collection in the sense of breeding of some of those species and their usage as a source of 'desirable genes' we analyzed pollen grain morphology (shape and size, as well as pollen viability. To determine mentioned pollen traits we used Axiovert 40C microscope together with a software package (AxioVision LE; Rel.4.3. for measurement of pollen length and width. Pollen viability was determined using a staining method (ALEXANDER, 1969. The results showed that species differ by pollen grain shape (round, egg-shaped, triangular and rod as well as by shape of exine (thick and spiky, thick to thin. In some species there was a specific number of apertures present (1-11. The size of viable pollen grains ranged from 29,10/12,58μ (coriander to 176,63/169,94μ (oil gourd, while non-viable pollen grains were always smaller (27,27/10,97μ to 119,62/100,86μ at the same plant species. Pollen viability of most species was around 80%. Lowest pollen viability was found in white flax (56,98%, and the highest in oil pumpkin (91,43%.

  9. Wild Musa Species Collection of Purwodadi Botanic Garden: Inventory and Its Morpho - taxonomic Review

    Directory of Open Access Journals (Sweden)

    Lia Hapsari

    2014-01-01

    Full Text Available Indonesia, being part of the center of origin of bananas (Musaceae, has a large number diversity of bananas both wild seeded species and edible seedless cultivated varieties. Inventory of wild Musa species in Purwodadi Botanic Garden has been conducted through compiling data records from PBG’s Registration section, field inspection and observation to living collections in the garden, herbarium specimens and literature studies. The results show that total 17 wild Musa accessions has been recorded planted in Purwodadi Botanic Garden since 1990 until 2012; comprises of 8 Musa acuminata sub species, 2 Musa balbisiana forms, 1 Musa ornata, 1 Musa troglodytarum, 1 Musa borneensis and 4 unidentified species Musa spp.; but only 8 living accessions remained in 2012. Morphotaxonomic review of those 8 wild Musa accessions remained will be discussed in this paper including their geographical distributions. According to its differentiated morphological characteristics observations, it is known that there are three accessions were resembled cultivars and one unidentified species have been determined its species level, so that their registration identity needs to be revised. It is important next to prioritize ex-situ conservation of wild Musa species not yet collected in Purwodadi Botanic Garden especially from Eastern Indonesia.

  10. Characterization of a new clinical yeast species isolated from a strain collection of Tunisian hospitals

    NARCIS (Netherlands)

    Eddouzi, J.; Hofstetter, V.; Groenewald, M.; Manai, M.; Sanglard, S.

    2013-01-01

    From a collection of yeast isolates isolated from patients in Tunisian hospitals between September 2006 and July 2010, the yeast strain JEY63 (CBS 12513), isolated from a 50-year-old male that suffered from oral thrush, could not be identified to the species level using conventional methods used in

  11. Interspecific shared collective decision-making in two forensically important species.

    Science.gov (United States)

    Boulay, Julien; Deneubourg, Jean-Louis; Hédouin, Valéry; Charabidzé, Damien

    2016-02-10

    To date, the study of collective behaviour has mainly focused on intraspecific situations: the collective decision-making of mixed-species groups involving interspecific aggregation-segregation has received little attention. Here, we show that, in both conspecific and heterospecific groups, the larvae of two species (Lucilia sericata and Calliphora vomitoria, calliphorid carrion-feeding flies) were able to make a collective choice. In all groups, the choice was made within a few minutes and persisted throughout the period of the experiment. The monitoring of a focal individual within a group showed that these aggregations were governed by attractive and retentive effects of the group. Furthermore, the similarity observed between the conspecific and heterospecific groups suggested the existence of shared aggregation signals. The group size was found to have a stronger influence than the species of necrophagous larvae. These results should be viewed in relation to the well-known correlation between group size and heat generation. This study provides the first experimental examination of the dynamics of collective decision-making in mixed-species groups of invertebrates, contributing to our understanding of the cooperation-competition phenomenon in animal social groups.

  12. Zoonotic Bartonella species in fleas collected on gray foxes (Urocyon cinereoargenteus).

    Science.gov (United States)

    Gabriel, Mourad W; Henn, Jennifer; Foley, Janet E; Brown, Richard N; Kasten, Rickie W; Foley, Patrick; Chomel, Bruno B

    2009-12-01

    Bartonella spp. are fastidious, gram-negative, rod-shaped bacteria and are usually vector-borne. However, the vector has not been definitively identified for many recently described species. In northern California, gray foxes (Urocyon cinereoargenteus) are infected with two zoonotic Bartonella species, B. rochalimae and B. vinsonii subsp. berkhoffii. Fleas (range 1-8 fleas per fox) were collected from 22 (41.5%) of 54 gray foxes from urban and backcountry zones near Hoopa, California. The flea species were determined, and DNA was individually extracted to establish the Bartonella species harbored by these fleas. Of the 108 fleas collected, 99 (92%) were identified as Pulex simulans. Overall, 39% (42/108) of the fleas were polymerase chain reaction (PCR)-positive for Bartonella, with B. rochalimae and B. vinsonii subsp. berkhoffii identified in 34 (81%) and 8 (19%) of the PCR-positive fleas, respectively. There was no difference between the prevalence of Bartonella spp. in P. simulans for the urban and backcountry zones. Fourteen (64%) of the 22 foxes were Bartonella bacteremic at one or more of the capture dates. In 10 instances, both the foxes and the fleas collected from them at the same blood collection were Bartonella-positive. B. rochalimae was the predominant species identified in both foxes and fleas. The competency of Pulex fleas as a vector of B. rochalimae has not been confirmed and will need to be demonstrated experimentally. Pulex spp. fleas readily feed on humans and may represent a source of human exposure to zoonotic species of Bartonella.

  13. Isolation, purification and characterization of xylanase produced by Arthrobacter sp. MTCC 5214 when grown in solid-state fermentation

    Digital Repository Service at National Institute of Oceanography (India)

    Khandeparker, R.; Bhosle, N.B.

    Thermoalkalophilic Arthrobacter sp. produced extracellular xylanase, when wheat bran, rice husk, rice bran and bagassae were used as carbon source under solid-state fermentation (SSF). The xylanase enzyme was isolated by ammonium sulfate (80...

  14. Genome sequence of Arthrobacter antarcticus strain W2, isolated from a slaughterhouse

    DEFF Research Database (Denmark)

    Herschend, Jakob; Raghupathi, Prem Krishnan; Røder, Henriette Lyng;

    2016-01-01

    We report the draft genome sequence ofArthrobacter antarcticusstrain W2, which was isolated from a wall of a small slaughterhouse in Denmark. The 4.43-Mb genome sequence was assembled into 170 contigs....

  15. SDMdata: A Web-Based Software Tool for Collecting Species Occurrence Records.

    Directory of Open Access Journals (Sweden)

    Xiaoquan Kong

    Full Text Available It is important to easily and efficiently obtain high quality species distribution data for predicting the potential distribution of species using species distribution models (SDMs. There is a need for a powerful software tool to automatically or semi-automatically assist in identifying and correcting errors. Here, we use Python to develop a web-based software tool (SDMdata to easily collect occurrence data from the Global Biodiversity Information Facility (GBIF and check species names and the accuracy of coordinates (latitude and longitude. It is an open source software (GNU Affero General Public License/AGPL licensed allowing anyone to access and manipulate the source code. SDMdata is available online free of charge from .

  16. An Arthrobacter spp. bacteremia leading to fetal death and maternal disseminated intravascular coagulation.

    Science.gov (United States)

    Shigeta, Naoya; Ozaki, Kimiaki; Hori, Kensuke; Ito, Kimihiko; Nakayama, Masahiro; Nakahira, Kumiko; Yanagihara, Itaru

    2013-02-01

    A 34-year-old parous woman developed high fever and threatened preterm labor after a 1-day trip, for which she was receiving prenatal care at a hospital. Three days after onset, at 24 4/7 weeks of gestation, she was transferred to our hospital in an emergency. Soon after the woman's arrival at our hospital, the infant was spontaneously stillborn via a transvaginal delivery. Laboratory tests revealed severe maternal disseminated intravascular coagulation with renal and liver insufficiency. Histopathologic examination of the placenta revealed vast fibrin deposition and remarkable neutrophilic infiltration in the intervillous space, suggesting a rare bacterial infection caused by Arthrobacter spp. The bacteria were predominantly detected in the placenta and maternal blood serum by common bacterial 16S rRNA sequencing after polymerase chain reaction amplification. We report the first case, to our knowledge, of bacteremia with Arthrobacter spp., which may lead to maternal disseminated intravascular coagulation and intrauterine fetal death.

  17. Improving the Survival of Arthrobacter sp., CW9 during Spray Drying Monitored by Scan Electric Microscope

    Directory of Open Access Journals (Sweden)

    Zhenqiang Xia

    2014-03-01

    Full Text Available The culture of an aquaculture probiotic, i.e., Arthrobacter sp., CW9, was spray dried with different carriers/protectants, in which Scan Electric Microscope (SEM was used to analyze the surface of micro-paticles produced by spray-drying. Matrix of protectants, inlet temperature and feed rate were optimized according to the survival rate after spray drying. Scanning electron micrographs showed that cracks formed on the particle surface were a key factor in enhancing bacteria survival during spray-drying. Span-60 had synergism with Skim Milk Powder (SMP: trehalose (7.5%: 7.5%, w/v in protecting Arthrobacter sp., CW9 bacteria from heat injury, unlike SMP with trehalose. Particle size is an important factor influencing bacteria survival during spray drying and particle size itself was influenced by certain additives.

  18. Improving the Survival of Arthrobacter sp., CW9 during Spray Drying Monitored by Scan Electric Microscope

    OpenAIRE

    Zhenqiang Xia; Ming Zhu; Yanqiu Zhang

    2014-01-01

    The culture of an aquaculture probiotic, i.e., Arthrobacter sp., CW9, was spray dried with different carriers/protectants, in which Scan Electric Microscope (SEM) was used to analyze the surface of micro-paticles produced by spray-drying. Matrix of protectants, inlet temperature and feed rate were optimized according to the survival rate after spray drying. Scanning electron micrographs showed that cracks formed on the particle surface were a key factor in enhancing bacteria survival during s...

  19. Biosorption of Lead(II) by Arthrobacter sp. 25: Process Optimization and Mechanism.

    Science.gov (United States)

    Jin, Yu; Wang, Xin; Zang, Tingting; Hu, Yang; Hu, Xiaojing; Ren, Guangming; Xu, Xiuhong; Qu, Juanjuan

    2016-08-28

    In the present work, Arthrobacter sp. 25, a lead-tolerant bacterium, was assayed to remove lead(II) from aqueous solution. The biosorption process was optimized by response surface methodology (RSM) based on the Box-Behnken design. The relationships between dependent and independent variables were quantitatively determined by second-order polynomial equation and 3D response surface plots. The biosorption mechanism was explored by characterization of the biosorbent before and after biosorption using atomic force microscopy (AFM), scanning electron microscopy, energy dispersive X-ray spectroscopy, X-ray diffraction, and Fourier transform infrared spectroscopy. The results showed that the maximum adsorption capacity of 9.6 mg/g was obtained at the initial lead ion concentration of 108.79 mg/l, pH value of 5.75, and biosorbent dosage of 9.9 g/l (fresh weight), which was close to the theoretically expected value of 9.88 mg/g. Arthrobacter sp. 25 is an ellipsoidalshaped bacterium covered with extracellular polymeric substances. The biosorption mechanism involved physical adsorption and microprecipitation as well as ion exchange, and functional groups such as phosphoryl, hydroxyl, amino, amide, carbonyl, and phosphate groups played vital roles in adsorption. The results indicate that Arthrobacter sp. 25 may be potentially used as a biosorbent for low-concentration lead(II) removal from wastewater.

  20. New metabolic pathway for degradation of 2-nitrobenzoate by Arthrobacter sp. SPG

    Directory of Open Access Journals (Sweden)

    Pankaj Kumar Arora

    2015-06-01

    Full Text Available Arthrobacter sp. SPG utilized 2-nitrobenzoate as its sole source of carbon and energy and degraded it with accumulation of stoichiometric amounts of nitrite ions. Salicylate and catechol were detected as metabolites of the 2-nitrobenzoate degradation using high performance liquid chromatography and gas chromatography-mass spectrometry. Enzyme activities for 2-nitrobenzoate-2-monooxygenase, salicylate hydroxylase, and catechol-1,2-dioxygenase were detected in the crude extracts of the 2-nitrobenzoate-induced cells of strain SPG. The 2-nitrobenzoate-monooxygenase activity resulted in formation of salicylate and nitrite from 2-nitrobenzoate whereas salicylate hydroxylase catalyzed the conversion of salicylate to catechol. The ring-cleaving enzyme, catechol-1,2-dioxygenase cleaved catechol to cis, cis-muconic acid. Cells of strain SPG were able to degrade 2-nitrobenzoate in sterile as well as non-sterile soil microcosms. The results of microcosm studies showed that strain SPG degraded more than 90% of 2-nitrobenzoate within 10-12 days. This study clearly shows that Arthrobacter sp. SPG degraded 2-nitrobenzoate via a new pathway with formation of salicylate and catechol as metabolites. Arthrobacter sp. SPG may be used for bioremediation of 2-nitrobenzoate-contaminated sites due to its ability to degrade 2-nitrobenzoate in soil.

  1. New metabolic pathway for degradation of 2-nitrobenzoate by Arthrobacter sp. SPG

    Science.gov (United States)

    Arora, Pankaj K.; Sharma, Ashutosh

    2015-01-01

    Arthrobacter sp. SPG utilized 2-nitrobenzoate as its sole source of carbon and energy and degraded it with accumulation of stoichiometric amounts of nitrite ions. Salicylate and catechol were detected as metabolites of the 2-nitrobenzoate degradation using high performance liquid chromatography and gas chromatography–mass spectrometry. Enzyme activities for 2-nitrobenzoate-2-monooxygenase, salicylate hydroxylase, and catechol-1,2-dioxygenase were detected in the crude extracts of the 2-nitrobenzoate-induced cells of strain SPG. The 2-nitrobenzoate-monooxygenase activity resulted in formation of salicylate and nitrite from 2-nitrobenzoate, whereas salicylate hydroxylase catalyzed the conversion of salicylate to catechol. The ring-cleaving enzyme, catechol-1,2-dioxygenase cleaved catechol to cis,cis-muconic acid. Cells of strain SPG were able to degrade 2-nitrobenzoate in sterile as well as non-sterile soil microcosms. The results of microcosm studies showed that strain SPG degraded more than 90% of 2-nitrobenzoate within 10–12 days. This study clearly shows that Arthrobacter sp. SPG degraded 2-nitrobenzoate via a new pathway with formation of salicylate and catechol as metabolites. Arthrobacter sp. SPG may be used for bioremediation of 2-nitrobenzoate-contaminated sites due to its ability to degrade 2-nitrobenzoate in soil. PMID:26082768

  2. Species characteristics of lead in sea foods collected from coastal water of Fujian, Southeastern of China

    Science.gov (United States)

    He, Ye; Chen, Zhiqiang; Mo, Fan; Huang, Limei; Xu, Liangjun; Wu, Yongning; Xue, Zhimin; Fu, Fengfu

    2016-09-01

    Various sea foods including fish, shellfish and shrimp were collected from different coastal areas of Fujian in China, and their Pb species characteristics were investigated in detail. The results indicated that there are two different species characteristics of Pb existing in sea food samples. About half of samples were detected to have only Pb2+, and another half of samples were detected to have both Pb2+ and trimethyl lead (TML). The results also revealed that Pb species characteristics in the sea foods rather depend on the species of sea food than the sampling area. In comparison with shellfish/shrimp samples, fish samples have higher concentrations of TML and Pb2+. Especially, the average concentration of TML in the TML-detected fish samples is about 3 times of that in the TML-detected shellfish/shrimp samples, indicating that fish has stronger ability to uptake and accumulate TML. The concentrations of total lead in all samples are lower than the maximum allowable limit of national standard, suggesting that the sea foods collected from Fujian are safe for consumption. By considering that TAL has more toxicity than Pb2+, the effect of TML in sea foods on the human health should be paid more attention in the future.

  3. Essential and non-essential element concentrations in two sleeper shark species collected in arctic waters

    Energy Technology Data Exchange (ETDEWEB)

    McMeans, Bailey C. [Great Lakes Institute for Environmental Research, University of Windsor, 401 Sunset Avenue, Windsor, ON, N9B 3P4 (Canada); Borga, Katrine [Norwegian Institute for Water Research, P.O. Box 173, Kjelsas, N-0411 Oslo (Norway); Bechtol, William R. [Alaska Department of Fish and Game, Division of Commercial Fisheries, Anchorage, AK 99518-1599 (United States); Higginbotham, David [Warnell School of Forestry and Natural Resources, University of Georgia, Athens, GA 30602-2152 (United States); Fisk, Aaron T. [Great Lakes Institute for Environmental Research, University of Windsor, 401 Sunset Avenue, Windsor, ON, N9B 3P4 (Canada)]. E-mail: afisk@uwindsor.ca

    2007-07-15

    A number of elements/metals have increased in arctic biota and are of concern due to their potential toxicity. Most studies on elements in the Arctic have focused on marine mammals and seabirds, but concentrations in the Greenland shark (Somniosus microcephalus) and Pacific sleeper shark (Somniosus pacificus), the only two shark species known to regularly inhabit arctic waters, have never been reported. To address this data gap, concentrations and patterns of 25 elements were analyzed in liver of Greenland sharks collected about Cumberland Sound (n = 24) and Pacific sleeper sharks collected about Prince William Sound (n = 14). Several non-essential elements differed between species/locations, which could suggest geographical exposure differences or ecological (e.g., diet) differences between the species. Certain essential elements also differed between the two sleeper sharks, which may indicate different physiological requirements between these closely related shark species, although information on such relationships are lacking for sharks and fish. - Patterns of essential and non-essential elements provide insight into sleeper shark biology and physiology.

  4. Molecular epidemiology and genetic diversity of Entamoeba species in a chelonian collection.

    Science.gov (United States)

    García, Gabriela; Ramos, Fernando; Pérez, Rodrigo Gutiérrez; Yañez, Jorge; Estrada, Mónica Salmerón; Mendoza, Lilian Hernández; Martinez-Hernandez, Fernando; Gaytán, Paul

    2014-02-01

    Veterinary medicine has focused recently on reptiles, due to the existence of captive collections in zoos and an increase in the acquisition of reptiles as pets. The protozoan parasite, Entamoeba can cause amoebiasis in various animal species and humans. Although amoebiasis disease is remarkably rare in most species of chelonians and crocodiles, these species may serve as Entamoeba species carriers that transmit parasites to susceptible reptile species, such as snakes and lizards, which can become sick and die. In this study, we identified the Entamoeba species in a population of healthy (disease-free) chelonians, and evaluated their diversity through the amplification and sequencing of a small subunit rDNA region. Using this procedure, three Entamoeba species were identified: Entamoeba invadens in 4.76 % of chelonians, Entamoeba moshkovskii in 3.96 % and Entamoeba terrapinae in 50 %. We did not detect mixed Entamoeba infections. Comparative analysis of the amplified region allowed us to determine the intra-species variations. The E. invadens and E. moshkovskii strains isolated in this study did not exhibit marked differences with respect to the sequences reported in GenBank. The analysis of the E. terrapinae isolates revealed three different subgroups (A, B and C). Although subgroups A and C were very similar, subgroup B showed a relatively marked difference with respect to subgroups A and C (Fst = 0.984 and Fst = 1.000, respectively; 10-14 % nucleotide variation, as determined by blast) and with respect to the sequences reported in GenBank. These results suggested that E. terrapinae subgroup B may be either in a process of speciation or belong to a different lineage. However, additional research is necessary to support this statement conclusively.

  5. Diversity and localization of bacterial endosymbionts from whitefly species collected in Brazil.

    Directory of Open Access Journals (Sweden)

    Julio Massaharu Marubayashi

    Full Text Available Whiteflies (Hemiptera: Aleyrodidae are sap-sucking insect pests, and some cause serious damage in agricultural crops by direct feeding and by transmitting plant viruses. Whiteflies maintain close associations with bacterial endosymbionts that can significantly influence their biology. All whitefly species harbor a primary endosymbiont, and a diverse array of secondary endosymbionts. In this study, we surveyed 34 whitefly populations collected from the states of Sao Paulo, Bahia, Minas Gerais and Parana in Brazil, for species identification and for infection with secondary endosymbionts. Sequencing the mitochondrial Cytochrome Oxidase I gene revealed the existence of five whitefly species: The sweetpotato whitefly Bemisia tabaci B biotype (recently termed Middle East-Asia Minor 1 or MEAM1, the greenhouse whitefly Trialeurodes vaporariorum, B. tabaci A biotype (recently termed New World 2 or NW2 collected only from Euphorbia, the Acacia whitefly Tetraleurodes acaciae and Bemisia tuberculata both were detected only on cassava. Sequencing rRNA genes showed that Hamiltonella and Rickettsia were highly prevalent in all MEAM1 populations, while Cardinium was close to fixation in only three populations. Surprisingly, some MEAM1 individuals and one NW2 population were infected with Fritschea. Arsenopnohus was the only endosymbiont detected in T. vaporariorum. In T. acaciae and B. tuberculata populations collected from cassava, Wolbachia was fixed in B. tuberculata and was highly prevalent in T. acaciae. Interestingly, while B. tuberculata was additionally infected with Arsenophonus, T. acaciae was infected with Cardinium and Fritschea. Fluorescence in situ hybridization analysis on representative individuals showed that Hamiltonella, Arsenopnohus and Fritschea were localized inside the bacteriome, Cardinium and Wolbachia exhibited dual localization patterns inside and outside the bacteriome, and Rickettsia showed strict localization outside the

  6. Diversity and localization of bacterial endosymbionts from whitefly species collected in Brazil.

    Science.gov (United States)

    Marubayashi, Julio Massaharu; Kliot, Adi; Yuki, Valdir Atsushi; Rezende, Jorge Alberto Marques; Krause-Sakate, Renate; Pavan, Marcelo Agenor; Ghanim, Murad

    2014-01-01

    Whiteflies (Hemiptera: Aleyrodidae) are sap-sucking insect pests, and some cause serious damage in agricultural crops by direct feeding and by transmitting plant viruses. Whiteflies maintain close associations with bacterial endosymbionts that can significantly influence their biology. All whitefly species harbor a primary endosymbiont, and a diverse array of secondary endosymbionts. In this study, we surveyed 34 whitefly populations collected from the states of Sao Paulo, Bahia, Minas Gerais and Parana in Brazil, for species identification and for infection with secondary endosymbionts. Sequencing the mitochondrial Cytochrome Oxidase I gene revealed the existence of five whitefly species: The sweetpotato whitefly Bemisia tabaci B biotype (recently termed Middle East-Asia Minor 1 or MEAM1), the greenhouse whitefly Trialeurodes vaporariorum, B. tabaci A biotype (recently termed New World 2 or NW2) collected only from Euphorbia, the Acacia whitefly Tetraleurodes acaciae and Bemisia tuberculata both were detected only on cassava. Sequencing rRNA genes showed that Hamiltonella and Rickettsia were highly prevalent in all MEAM1 populations, while Cardinium was close to fixation in only three populations. Surprisingly, some MEAM1 individuals and one NW2 population were infected with Fritschea. Arsenopnohus was the only endosymbiont detected in T. vaporariorum. In T. acaciae and B. tuberculata populations collected from cassava, Wolbachia was fixed in B. tuberculata and was highly prevalent in T. acaciae. Interestingly, while B. tuberculata was additionally infected with Arsenophonus, T. acaciae was infected with Cardinium and Fritschea. Fluorescence in situ hybridization analysis on representative individuals showed that Hamiltonella, Arsenopnohus and Fritschea were localized inside the bacteriome, Cardinium and Wolbachia exhibited dual localization patterns inside and outside the bacteriome, and Rickettsia showed strict localization outside the bacteriome. This study is

  7. Species of Spalangia (Hymenoptera: Pteromalidae collected from buffalo dung in Itumbiara, Goias, Brazil

    Directory of Open Access Journals (Sweden)

    Michel E. V. Milhomem

    2004-11-01

    Full Text Available This study had the objective of determining the species of Spalangia in pupae of muscoid Diptera present in buffalo dung, collected in the municipality of Itumbiara, GO, from May to December 2003. The dipterous pupae were obtained by the flotation method. They were individually placed in gelatin capsules until the emergence of the flies and/or their parasitoids. The overall prevalence of parasitism was 2.59%. The prevalences of parasitism presented by the parasitoid species Spalangia cameroni (Perkins, Spalangia drosophilae (Ashmead, Spalangia endius (Walker, Spalangia nigra (Letraille and Spalangia nigroaenea (Curtis were 0.53%, 1.37%, 0.15%, 0.04% and 0.49%, respectively.

  8. Survey of ticks collected in Mississippi for Rickettsia, Ehrlichia, and Borrelia species.

    Science.gov (United States)

    Goddard, Jerome; Sumner, John W; Nicholson, William L; Paddock, Christopher D; Shen, John; Piesman, Joseph

    2003-12-01

    From November 1999 through October 2000, we tested ticks collected from vegetation as well as from deer, dogs, and humans for spotted fever group (SFG) rickettsiae, Ehrlichia chaffeensis, and Borrelia spp. spirochetes. A total of 149 adult ticks representing four species was collected from 11 collection sites from southwestern to northern Mississippi. Amblyomma americanum was most commonly collected (n=68), followed by Ixodes scapularis (n=53). The bird tick, Ixodes brunneus (usually rare), was the third most commonly collected tick (n=17). Eleven Dermacentor variabilis were also collected. Ticks were cut longitudinally to make smears on three microscope slides. The remaining body parts were frozen at -65 degrees C for additional testing. Tick smears were stained by direct immunofluorescence assays (DFA) for Rickettsia spp. and Borrelia spp., while indirect immunofluorescence assays (IFA) were used for Ehrlichia spp. The corresponding tick for each positive smear was evaluated using PCR analysis. None of the 149 ticks tested was DFA positive for Borrelia spp. However, smears of 30 (20%) and 32 (22%) ticks reacted with anti-E. chaffeensis sera and anti-R. rickettsii conjugate (known to react with several members of the spotted fever group), respectively. None of the ticks staining with the IFA for Ehrlichia was positive for E. chaffeensis using PCR. However, 23 (72%) of 32 FA-positive ticks for SFG rickettsiae yielded amplicons of the appropriate size when tested using a PCR assay for SFG rickettsiae, corresponding to an overall infection rate with SFG rickettsiae among the collected ticks of 15%. Smears of 12 (71%) of 17 I. brunneus revealed abundant bacilliform bacteria. PCR amplification of DNA from a single I. brunneus containing these bacteria was performed using universal primers for the 16S rRNA gene as well as Borrelia-specific primers. The predominant sequence obtained using the universal primers did not match any sequence in GenBank, but it showed 91

  9. Characterization of qnrB-like genes in Citrobacter species of the American Type Culture Collection.

    Science.gov (United States)

    Saga, Tomoo; Sabtcheva, Stefana; Mitsutake, Kotaro; Ishii, Yoshikazu; Tateda, Kazuhiro; Yamaguchi, Keizo; Kaku, Mitsuo

    2013-06-01

    Among five American Type Culture Collection (ATCC) Citrobacter strains, qnrB60 in Citrobacter freundii ATCC 6879, an isolate from the preantibiotic era, and qnrB61 in Citrobacter braakii ATCC 51113(T), a type strain belonging to the C. freundii complex, were identified. Meanwhile, a truncated qnrB-like pseudogene was identified in C. freundii ATCC 8090(T) and ATCC 43864. No qnrB-like sequence was found in Citrobacter koseri ATCC 27028(T). These findings underscore the close relationship between this species and qnrB.

  10. Food collection and response to pheromones in an ant species exposed to electromagnetic radiation.

    Science.gov (United States)

    Cammaerts, Marie-Claire; Rachidi, Zoheir; Bellens, François; De Doncker, Philippe

    2013-09-01

    We used the ant species Myrmica sabuleti as a model to study the impact of electromagnetic waves on social insects' response to their pheromones and their food collection. We quantified M. sabuleti workers' response to their trail, area marking and alarm pheromone under normal conditions. Then, we quantified the same responses while under the influence of electromagnetic waves. Under such an influence, ants followed trails for only short distances, no longer arrived at marked areas and no longer orientated themselves to a source of alarm pheromone. Also when exposed to electromagnetic waves, ants became unable to return to their nest and recruit congeners; therefore, the number of ants collecting food increases only slightly and slowly. After 180 h of exposure, their colonies deteriorated. Electromagnetic radiation obviously affects social insects' behavior and physiology.

  11. On a collection of calappid crabs (Crustacea: Decapoda: Brachyura) from Fiji, with a description of a new species of Mursia.

    Science.gov (United States)

    Galil, Bella S

    2013-11-07

    Seven species of calappid crabs were identified from material collected during four IRD-MNHN expeditions conducted in 1998 and 1999 in shallow and deep waters off Fiji. Six species are reported for the first time from the islands. One new species, Mursia murimura n. sp., is described and illustrated. The new species differs from the closely related M. diwata Galil & Takeda, 2004, with which it shares a stout, distally auriculated first male pleopod, by possessing much longer lateral carapacial and cheliped spines.

  12. Regulation and function of transaldolase isoenzymes involved in sugar and one-carbon metabolism in the ribulose monophosphate cycle methylotroph Arthrobacter P1

    NARCIS (Netherlands)

    Levering, P.R.; Dijkhuizen, Lubbert

    1986-01-01

    In the facultative methylotroph Arthrobacter P1 the enzyme transaldolase plays an important role in both the pentose phosphate pathway and in the ribulose monophosphate cycle of formaldehyde fixation. Among gluconate-negative mutants of Arthrobacter P1 strains occurred which also were unable to grow

  13. Degradation of 4-fluorophenol by Arthrobacter sp strain IF1

    NARCIS (Netherlands)

    Ferreira, Maria Isabel M.; Marchesi, Julian R.; Janssen, Dick B.

    2008-01-01

    A Gram-positive bacterial strain capable of aerobic biodegradation of 4-fluorophenol (4-FP) as the sole source of carbon and energy was isolated by selective enrichment from soil samples collected near an industrial site. The organism, designated strain IF1, was identified as a member of the genus A

  14. Hazardous impact of arsenic on tissues of same fish species collected from two ecosystem

    Energy Technology Data Exchange (ETDEWEB)

    Shah, Abdul Qadir, E-mail: aqshah07@yahoo.com [National Center of Excellence in Analytical Chemistry, University of Sindh, Jamshoro 76080 (Pakistan); Kazi, Tasneem Gul, E-mail: tgkazi@yahoo.com [National Center of Excellence in Analytical Chemistry, University of Sindh, Jamshoro 76080 (Pakistan); Arain, Mohammad Balal, E-mail: bilal_KU2004@yahoo.com [National Center of Excellence in Analytical Chemistry, University of Sindh, Jamshoro 76080 (Pakistan); Baig, Jameel Ahmed, E-mail: jab_mughal@yahoo.com [National Center of Excellence in Analytical Chemistry, University of Sindh, Jamshoro 76080 (Pakistan); Afridi, Hassan Imran, E-mail: hassanimranafridi@yahoo.com [National Center of Excellence in Analytical Chemistry, University of Sindh, Jamshoro 76080 (Pakistan); Kandhro, Ghulam Abbas, E-mail: gakandhro@yahoo.com [National Center of Excellence in Analytical Chemistry, University of Sindh, Jamshoro 76080 (Pakistan); Khan, Sumaira, E-mail: skhanzai@gmail.com [National Center of Excellence in Analytical Chemistry, University of Sindh, Jamshoro 76080 (Pakistan); Jamali, Mohammad Khan, E-mail: mkhanjamali@yahoo.com [Government degree college Usta Mohammad Balochistan Pakistan (Pakistan)

    2009-08-15

    The purpose of this paper is to develop a database of fish tissues and to evaluate concentration of arsenic (As) in five tissues of fish species collected from Manchar Lake Pakistan and to compare concentration of As in fish tissues of same fish species collected from the Indus River, Pakistan. A sensitive and precise, hydride generation atomic absorption spectrometry (HG AAS) method is presented for the determination of total Arsenic (As). Microwave acid-assisted digestion (MAD) procedure based on the mixture HNO{sub 3}/H{sub 2}O{sub 2} was evaluated. The method was successfully validated against CRM DORM-2 (dogfish muscle). Quantitative As recovery in CRM (DORM-2) was obtained and no statistical differences were found at 95% level by applying the t-test. The limit of detection (LOD) and limit of quantitation (LOQ), for As were established as 0.022 and 0.063 {mu}g g{sup -1}, respectively. The results of this study indicated that As concentration in fish tissues from the Indus River are generally lower than in tissues of fishes from Manchar Lake. Arsenic concentrations in fish tissues of Indus River are although above the respective human health-based concentrations.

  15. Molecular detection of Rickettsia species in Amblyomma ticks collected from snakes in Thailand.

    Science.gov (United States)

    Sumrandee, Chalao; Hirunkanokpun, Supanee; Doornbos, Kathryn; Kitthawee, Sangvorn; Baimai, Visut; Grubhoffer, Libor; Trinachartvanit, Wachareeporn; Ahantarig, Arunee

    2014-10-01

    Some reptile ticks are potential vectors of pathogens such as spotted fever group (SFG) rickettsiae. Here, we report for the first time in detail the molecular evidence, DNA sequences and phylogenetic studies, for the presence of Rickettsia spp. in Amblyomma ticks (Amblyomma helvolum and Amblyomma varanense) from snakes in Thailand. A total of 24 tick samples was collected from 4 snake species and identified. A phylogenetic analysis inferred from the partial sequences of the gltA gene indicated that the Rickettsia spp. from 2 Amblyomma helvolum and 1 Amblyomma varanense belong to the same group as the SFG rickettsiae, which are closely related to Rickettsia raoultii strains. In contrast, there was 1 Rickettsia sp. from Amblyomma helvolum grouped into the same clade with other SFG rickettsiae (Rickettsia tamurae, Rickettsia monacensis, and a Rickettsia endosymbiont of Amblyomma dubitatum from Brazil). However, another Rickettsia sp. from Amblyomma varanense was closely related to Rickettsia bellii and Rickettsia sp. strain RDa420 from Thailand. In addition, from phylogenetic results based on the 16S rRNA gene and a concatenated tree of the 3 genes (gltA, ompA, and ompB), we found what may be a novel SFG rickettsia species closely related to Rickettsia raoultii (from both Amblyomma varanense and Amblyomma helvolum). In conclusion, our findings are the first report on the presence of novel SFG rickettsiae in 2 snake tick species, Amblyomma varanense and Amblyomma helvolum in Thailand and in south-eastern Asia.

  16. 2,3-Dihydroxybiphenyl dioxygenase gene was first discovered in Arthrobacter sp. strain P J3

    Institute of Scientific and Technical Information of China (English)

    YANG MeiYing; MA PengDa; LI WenMing; LIU JinYing; LI Liang; ZHU XiaoJuan; WANG XingZhi

    2007-01-01

    Bacterium strain PJ3, isolated from wastewater and identified as Arthrobacter sp. bacterium based on its 16S rDNA gene, could use carbazole as the sole carbon, nitrogen and energy source. The genomic libraryof strain PJ3 was constructed and a positive clone JM109 (pUCW402) was screened out for the expression of dioxygenase by the ability to form yellow ring-fission product. A 2,3-dihydroxybiphenyl dioxygenase (23DHBD) gene of 933 bp was found in the 3360 bp exogenous fragment of pUCW402 by GenSCAN software and BLAST analysis. The phylogenetic analysis showed that 23DHBD from strain PJ3 formed a deep branch separate from a cluster containing most known 23DHBD in GenBank.Southern hybridization confirmed for the first time that the 23DHBD gene was from the genomic DNA of Arthrobacter sp. PJ3. In order to test the gene function, recombinant bacterium BL21 (pETW-8) was constructed to express 23DHBD. The expression level in BL21 (pETW-8) was highest compared with the recombinant bacteria JM109 (pUCW402) and strain PJ3. We observed that 23DHBD was not absolute specific. The enzyme activity was higher with 2,3-dihydroxybiphenyl as a substrate than with catechol.The substrate specificity assay suggested that 23DHBD was essential for cleavage of bi-cyclic aromatic compounds during the course of aromatic compound biodegradation in Arthrobacter sp. strain PJ3.

  17. Complete genome sequence and metabolic potential of the quinaldine-degrading bacterium Arthrobacter sp. Rue61a

    Directory of Open Access Journals (Sweden)

    Niewerth Heiko

    2012-10-01

    Full Text Available Abstract Background Bacteria of the genus Arthrobacter are ubiquitous in soil environments and can be considered as true survivalists. Arthrobacter sp. strain Rue61a is an isolate from sewage sludge able to utilize quinaldine (2-methylquinoline as sole carbon and energy source. The genome provides insight into the molecular basis of the versatility and robustness of this environmental Arthrobacter strain. Results The genome of Arthrobacter sp. Rue61a consists of a single circular chromosome of 4,736,495 bp with an average G + C content of 62.32%, the circular 231,551-bp plasmid pARUE232, and the linear 112,992-bp plasmid pARUE113 that was already published. Plasmid pARUE232 is proposed to contribute to the resistance of Arthrobacter sp. Rue61a to arsenate and Pb2+, whereas the linear plasmid confers the ability to convert quinaldine to anthranilate. Remarkably, degradation of anthranilate exclusively proceeds via a CoA-thioester pathway. Apart from quinaldine utilization, strain Rue61a has a limited set of aromatic degradation pathways, enabling the utilization of 4-hydroxy-substituted aromatic carboxylic acids, which are characteristic products of lignin depolymerization, via ortho cleavage of protocatechuate. However, 4-hydroxyphenylacetate degradation likely proceeds via meta cleavage of homoprotocatechuate. The genome of strain Rue61a contains numerous genes associated with osmoprotection, and a high number of genes coding for transporters. It encodes a broad spectrum of enzymes for the uptake and utilization of various sugars and organic nitrogen compounds. A. aurescens TC-1 is the closest sequenced relative of strain Rue61a. Conclusions The genome of Arthrobacter sp. Rue61a reflects the saprophytic lifestyle and nutritional versatility of the organism and a strong adaptive potential to environmental stress. The circular plasmid pARUE232 and the linear plasmid pARUE113 contribute to heavy metal resistance and to the ability to degrade

  18. Diversity Driven Coexistence: Collective Stability in the Cyclic Competition of Three Species

    Science.gov (United States)

    Bassler, Kevin E.; Frey, Erwin; Zia, R. K. P.

    2015-03-01

    The basic physics of collective behavior are often difficult to quantify and understand, particularly when the system is driven out of equilibrium. Many complex systems are usefully described as complex networks, consisting of nodes and links. The nodes specify individual components of the system and the links describe their interactions. When both nodes and links change dynamically, or `co-evolve', as happens in many realistic systems, complex mathematical structures are encountered, posing challenges to our understanding. In this context, we introduce a minimal system of node and link degrees of freedom, co-evolving with stochastic rules. Specifically, we show that diversity of social temperament (intro- or extroversion) can produce collective stable coexistence when three species compete cyclically. It is well-known that when only extroverts exist in a stochastic rock-paper-scissors game, or in a conserved predator-prey, Lotka-Volterra system, extinction occurs at times of O(N), where N is the number of nodes. We find that when both introverts and extroverts exist, where introverts sever social interactions and extroverts create them, collective coexistence prevails in long-living, quasi-stationary states. Work supported by the NSF through Grants DMR-1206839 (KEB) and DMR-1244666 (RKPZ), and by the AFOSR and DARPA through Grant FA9550-12-1-0405 (KEB).

  19. Impact of phenolic substrate and growth temperature on the arthrobacter chlorophenolicus proteome

    Energy Technology Data Exchange (ETDEWEB)

    Unell, Maria; Abraham, Paul E.; Shah, Manesh; Zhang, Bing; Ruckert, Christian; VerBerkmoes, Nathan C.; Jansson, Janet K.

    2009-02-15

    We compared the Arthrobacter chlorophenolicus proteome during growth on 4-chlorophenol, 4-nitrophenol or phenol at 5 C and 28 C; both for the wild type and a mutant strain with mass spectrometry based proteomics. A label free workflow employing spectral counting identified 3749 proteins across all growth conditions, representing over 70% of the predicted genome and 739 of these proteins form the core proteome. Statistically significant differences were found in the proteomes of cells grown under different conditions including differentiation of hundreds of unknown proteins. The 4-chlorophenol-degradation pathway was confirmed, but not that for phenol.

  20. 6-hydroxy-L-nicotine from Arthrobacter nicotinovorans facilitate spatial memory formation in rats

    OpenAIRE

    Lucian Hritcu; Marius Stefan; Marius Mihasan; Roderich Brandsch

    2010-01-01

    Effects of 6-hydroxy-L-nicotine derived from nicotine catabolism in Arthrobacter nicotinovorans on learning and memory processes were examined in adult male Wistar rats. 6-hydroxy-L-nicotine (0.3 mg/kg, i.p., 7 consecutive days chronic administration) significantly increased spontaneous alternation in Y-maze task and working memory in radial arm-maze task, suggesting effects on short-term memory, without affecting long-term memory, explored by reference memory in radial arm-maze t...

  1. Accumulation of rare earth elements by siderophore-forming Arthrobacter luteolus isolated from rare earth environment of Chavara, India

    Indian Academy of Sciences (India)

    E S Challaraj Emmanuel; T Ananthi; B Anandkumar; S Maruthamuthu

    2012-03-01

    In this study, Arthrobacter luteolus, isolated from rare earth environment of Chavara (Quilon district, Kerala, India), were found to produce catechol-type siderophores. The bacterial strain accumulated rare earth elements such as samarium and scandium. The siderophores may play a role in the accumulation of rare earth elements. Catecholate siderophore and low-molecular-weight organic acids were found to be present in experiments with Arthrobacter luteolus. The influence of siderophore on the accumulation of rare earth elements by bacteria has been extensively discussed.

  2. Extended Fluid-Dynamics and Collective Motion of Two Trapped Fermion Species with Pairing Interactions

    Science.gov (United States)

    Hernández, E. S.; Capuzzi, P.; Szybisz, L.

    2011-02-01

    We extend our earlier fluid-dynamical description of fermion superfluids incorporating the particle energy flow together with the equation of motion for the internal kinetic energy of the pairs. The formal scheme combines a set of equations similar to those of classical hydrodynamics with the equations of motion for the anomalous density and for its related momentum density and kinetic energy density. This dynamical frame represents a second order truncation of an infinite hierarchy of equations of motion isomorphic to the full time dependent Hartree-Fock-Bogoliubov equations in coordinate representation. We analyze the equilibrium solutions and fluctuations for a homogeneous, unpolarized fermion system of two species, and show that the collective spectrum presents the well-known Anderson-Bogoliubov low energy mode of homogeneous superfluids and a pairing vibration near the gap energy.

  3. Parasites of domestic and wild animals in South Africa. XLIV. Fleas (Insecta : Siphonaptera : Pulicidae collected from 15 carnivore species

    Directory of Open Access Journals (Sweden)

    I.G. Horak

    2004-11-01

    Full Text Available Fleas were collected from 61 wild carnivores belonging to 13 species in various nature reserves and on farms, two feral domestic cats in a nature reserve and a domestic dog in the city of Johannesburg. Eleven flea species, including two subspecies of one of these, belonging to six genera were recovered. Amongst these only Ctenocephalides felis felis and Ctenocephalides felis strongylus are considered specific parasites of carnivores. The remaining ten species normally infest the prey animals of the various carnivores.

  4. Molecular Detection of Bartonella Species in Fleas Collected from Dogs and Cats from Costa Rica.

    Science.gov (United States)

    Rojas, Norman; Troyo, Adriana; Castillo, Daniela; Gutierrez, Ricardo; Harrus, Shimon

    2015-10-01

    The bacterial genus Bartonella includes several species with zoonotic potential, some of which are common in domestic dogs and cats, as well as in their fleas. Because there is no previous information about the presence of Bartonella species in fleas from Central America, this study aimed at evaluating the presence of Bartonella spp. in fleas collected from dogs and cats in Costa Rica. A total 72 pools of Ctenocephalides felis and 21 pools of Pulex simulans were screened by conventional PCR to detect Bartonella DNA fragments of the citrate synthase (gltA) and the β subunit RNA polymerase (rpoB) genes. Three (4.2%) pools of C. felis and five pools (22.7%) of P. simulans were found positive for Bartonella DNA. Sequences corresponding to Bartonella vinsonii subsp. berkhoffii strain Winnie, B. rochalimae, and an undescribed Bartonella sp. (clone BR10) were detected in flea pools from dogs, whereas Bartonella henselae and B. clarridgeiae sequences were identified in flea pools from cats. The detection of zoonotic Bartonella spp. in this study should increase the awareness to these flea-borne diseases among physicians and public health workers and highlight the importance of flea control in the region.

  5. Hepatozoon and Theileria species detected in ticks collected from mammals and snakes in Thailand.

    Science.gov (United States)

    Sumrandee, Chalao; Baimai, Visut; Trinachartvanit, Wachareeporn; Ahantarig, Arunee

    2015-04-01

    We report the detection of Hepatozoon and Theileria in 103 ticks from mammals and snakes in Thailand. By using a genus-specific 18S rRNA PCR, Hepatozoon and Theileria spp. were detected in 8% and 18%, respectively, of ticks (n=79) removed from mammals. Of the ticks removed from snakes (n=24), 96% were infected with Hepatozoon spp., but none were infected with Theileria. Phylogenetic analysis revealed that Hepatozoon spp. detected from Dermacentor astrosignatus and Dermacentor auratus ticks from Wild boar (Sus scrofa) formed a phylogenetic group with many isolates of Hepatozoon felis that were distantly related to a species group containing Hepatozoon canis and Hepatozoon americanum. In contrast, a phylogenetic analysis of the Hepatozoon sequences of snake ticks revealed that Hepatozoon spp. from Amblyomma varanense from King cobra (Ophiophagus hannah) and Amblyomma helvolum ticks from Indochinese rat snake (Ptyas korros), and Asiatic water snake (Xenochrophis piscator) are grouped with Hepatozoon spp. recently isolated from Monocellate cobras, Reticulated pythons and Burmese pythons, all of Thai origin, and with Hepatozoon sp. 774c that has been detected from a tick species obtained from Argus monitors in Australia. A phylogenetic analysis demonstrated that Theileria spp. from Rhipicephalus (Boophilus) microplus, Haemaphysalis obesa, and Haemaphysalis lagrangei ticks from Sambar deer (Cervus unicolor) cluster with the Theileria cervi isolates WU11 and 239, and Theileria sp. Iwate 141. We report for the first time a Hepatozoon species that shares genetic similarity with Hepatozoon felis found in Dermacentor astrosignatus and Dermacentor auratus ticks collected from Wild boars in Thailand. In addition, we found the presence of a Theileria cervi-like sp. which suggests the potential role of Haemaphysalis lagrangei as a Theileria vector in Thailand.

  6. Genetic differentiation of Arthrobacter population from heavy metal-contaminated environment

    Institute of Scientific and Technical Information of China (English)

    ZHANG Hanbo; REN Weimin; SHAO Qiyong; DUAN Changqun

    2007-01-01

    Six samples containing extremely high concentration of Pb,Zn,and Cd were obtained from the layers of 5-10 cm and 25-30 cm three tailing piles,with ages of about 10,20 and more than 80 years,respectively.Then,48 bacterial strains were obtained from these samples,and subsequently their phylogenetic positions were determined by analysis on the partial sequence of 16S rRNA gene (fragment length ranging from 474 to 708 bp).These isolates were members of the Arthrobacter genus,phylogenetically close to A.keyseri and A.ureafaciens,with sequence ranging from 99.1%to 100%.Furthermore,genetic variation between subpopulations from different samples was revealed by analysis on their randomly amplified polymorphic DNA profile.Nei genetic distance showed that the greatest differentiation occurred between subpopulation A and C.Notably,either genetic distance between subpopulations from the layers of 5-10 cm and 25-30 cm of each tailing pile or between same layers of different tailing pile increased with the history of tailings.Moreover,correlation analysis showed that soluble Pb has a significantly negative relationship with Nei'gene diversity of subpopulation.It was assumed that soluble Pb may be responsible for the reduced genetic diversity of the Arthrobacter population.Our data provided evidence that genetic differentiation of microbial populations was consistent with the changes of environmental factors,particularly heavy metals.

  7. Transcriptional profiling of Gram-positive Arthrobacter in the phyllosphere: induction of pollutant degradation genes by natural plant phenolic compounds

    NARCIS (Netherlands)

    Scheublin, T.R.; Deusch, S.; Moreno-Forero, S.K.; Müller, J.A.; van der Meer, J.R.; Leveau, J.H.J.

    2014-01-01

    Arthrobacter chlorophenolicus A6 is a Gram-positive, 4-chlorophenol degrading soil bacterium that was recently shown to be an effective colonizer of plant leaf surfaces. The genetic basis for this phyllosphere competency is unknown. In this paper, we describe the genome-wide expression profile of A.

  8. Nitrogen metabolism in the facultative methylotroph Arthrobacter P1 grown with various amines or ammonia as nitrogen sources

    NARCIS (Netherlands)

    de Boer, L.; Brouwer, J.W.; Hassel, C.W. van; Levering, Pieter; Dijkhuizen, L.

    1989-01-01

    The metabolism of trimethylamine (TMA) and dimethylamine (DMA) in Arthrobacter P1 involved the enzymes TMA monooxygenase and trimethylamine-N-oxide (TMA-NO) demethylase, and DMA monooxygenase, respectively. The methylamine and formaldehyde produced were further metabolized via a primary amine oxidas

  9. Growth of Arthrobacter sp. strain JBH1 on nitroglycerin as the sole source of carbon and nitrogen.

    Science.gov (United States)

    Husserl, Johana; Spain, Jim C; Hughes, Joseph B

    2010-03-01

    Arthrobacter sp. strain JBH1 was isolated from nitroglycerin-contaminated soil by selective enrichment. Detection of transient intermediates and simultaneous adaptation studies with potential intermediates indicated that the degradation pathway involves the conversion of nitroglycerin to glycerol via 1,2-dinitroglycerin and 1-mononitroglycerin, with concomitant release of nitrite. Glycerol then serves as the source of carbon and energy.

  10. Analysis of Two Gene Clusters Involved in the Degradation of 4-Fluorophenol by Arthrobacter sp Strain IF1

    NARCIS (Netherlands)

    Ferreira, Maria Isabel M.; Iida, Toshiya; Hasan, Syed A.; Nakamura, Kaoru; Fraaije, Marco W.; Janssen, Dick B.; Kudo, Toshiaki

    2009-01-01

    Arthrobacter sp. strain IF1 is able to grow on 4-fluorophenol (4-FP) as a sole source of carbon and energy. To clone the 4-FP degradation genes, DNA libraries were constructed and screened with a probe obtained by PCR using primers designed on the basis of conserved regions of aromatic two-component

  11. Class 1 integrons and tetracycline resistance genes in Alcaligenes, Arthrobacter, and Pseudomonas spp. isolated from pigsties and manured soil

    DEFF Research Database (Denmark)

    Agersø, Yvonne; Sandvang, Dorthe

    2005-01-01

    Escherichia coli, Enterobacter spp., Arthrobacter spp., Alcaligenes spp., Pseudomonas spp., and Corynebacterium glutamicum. The 257 isolates were screened for in-1. Eighty-one of the gram-negative isolates were also screened for the Tc-r genes tet(A), tet(B), and tet(C), and all (n = 72) gram...

  12. Increased iron-stress resilience of maize through inoculation of siderophore-producing Arthrobacter globiformis from mine.

    Science.gov (United States)

    Sharma, Meenakshi; Mishra, Vandana; Rau, Nupur; Sharma, Radhey Shyam

    2016-07-01

    Iron deficiency is common among graminaceous crops. Ecologically successful wild grasses from iron-limiting habitats are likely to harbour bacteria which secrete efficient high-affinity iron-chelating molecules (siderophores) to solubilize and mobilize iron. Such siderophore-producing rhizobacteria may increase the iron-stress resilience of graminaceous crops. Considering this, 51 rhizobacterial isolates of Dichanthium annulatum from iron-limiting abandoned mine (∼84% biologically unavailable iron) were purified and tested for siderophore production; and efficacy of Arthrobacter globiformis inoculation to increase iron-stress resilience of maize and wheat was also evaluated. 16S rRNA sequence analyses demonstrated that siderophore-producing bacteria were taxonomically diverse (seven genera, nineteen species). Among these, Gram-positive Bacillus (eleven species) was prevalent (76.92%). A. globiformis, a commonly found rhizobacterium of graminaceous crops was investigated in detail. Its siderophore has high iron-chelation capacity (ICC: 13.0 ± 2.4 μM) and effectively dissolutes diverse iron-complexes (FeCl3 : 256.13 ± 26.56 μM/ml; Fe2 O3 red: 84.3 ± 4.74 μM/ml; mine spoil: 123.84 ± 4.38 μM/ml). Siderophore production (ICC) of A. globiformis BGDa404 also varied with supplementation of different iron complexes. In plant bioassay with iron-deficiency sensitive species maize, A. globiformis inoculation triggered stress-associated traits (peroxidase and proline) in roots, enhanced plant biomass, uptake of iron and phosphate, and protein and chlorophyll contents. However, in iron deficiency tolerant species wheat, growth improvement was marginal. The present study illustrates: (i) rhizosphere of D. annulatum colonizing abandoned mine as a "hotspot" of siderophore-producing bacteria; and (ii) potential of A. globiformis BGDa404 inoculation to increase iron-stress resilience in maize. A. globiformis BGDa404 has the potential to develop as

  13. Informing species conservation at multiple scales using data collected for marine mammal stock assessments.

    Directory of Open Access Journals (Sweden)

    Alana Grech

    Full Text Available BACKGROUND: Conservation planning and the design of marine protected areas (MPAs requires spatially explicit information on the distribution of ecological features. Most species of marine mammals range over large areas and across multiple planning regions. The spatial distributions of marine mammals are difficult to predict using habitat modelling at ecological scales because of insufficient understanding of their habitat needs, however, relevant information may be available from surveys conducted to inform mandatory stock assessments. METHODOLOGY AND RESULTS: We use a 20-year time series of systematic aerial surveys of dugong (Dugong dugong abundance to create spatially-explicit models of dugong distribution and relative density at the scale of the coastal waters of northeast Australia (∼136,000 km(2. We interpolated the corrected data at the scale of 2 km * 2 km planning units using geostatistics. Planning units were classified as low, medium, high and very high dugong density on the basis of the relative density of dugongs estimated from the models and a frequency analysis. Torres Strait was identified as the most significant dugong habitat in northeast Australia and the most globally significant habitat known for any member of the Order Sirenia. The models are used by local, State and Federal agencies to inform management decisions related to the Indigenous harvest of dugongs, gill-net fisheries and Australia's National Representative System of Marine Protected Areas. CONCLUSION/SIGNIFICANCE: In this paper we demonstrate that spatially-explicit population models add value to data collected for stock assessments, provide a robust alternative to predictive habitat distribution models, and inform species conservation at multiple scales.

  14. Comparative study of the chemical composition of essential oils of five Tagetes species collected in Venezuela.

    Science.gov (United States)

    Armas, Kaylin; Rojas, Janne; Rojas, Luis; Morales, Antonio

    2012-09-01

    The leaves and inflorescences of five species of Tagetes, family Asteraceae, were collected from different locations in Mérida state, Venezuela, and their essential oils analyzed by GC and GC/MS. Several differences were observed in the composition of these oils, mainly regarding the major components, which for T. caracasana were trans-ocimenone (64.3%) and cis-tagetone (13.7%), and for T. erecta, piperitone (35.9%) and terpinolene (22.2%). High amounts of trans-anethole (87.5%) and estragole (10.7%) were observed in T. filifolia, while T. subulata essential oil contained terpinolene (26.0%), piperitenone (13.1%) and limonene (10.8%). For T. patula, two different oil samples were analyzed, leaves (TPL) and inflorescences (TPI). The TPL oil showed terpinolene (20.9%) and piperitenone (14.0%) as main components, while the TPI sample was composed mainly of beta-caryophyllene (23.7%), terpinolene (15.6%) and cis-beta-ocimene (15.5%).

  15. Species-specific accumulation of dioxin related compounds in cetaceans collected from Japanese coastal waters

    Energy Technology Data Exchange (ETDEWEB)

    Kajiwara, N.; Watanabe, M.; Tanabe, S. [Center for Marine Environmental Studies (CMES), Ehime Univ. (Japan); Amano, M. [Ocean Research Inst., Univ. of Tokyo, Iwate (Japan); Yamada, T. [National Science Museum, Tokyo (Japan)

    2004-09-15

    Polychlorinated dibenzo-p-dioxins (PCDDs) and dibenzofurans (PCDFs) are extremely hazardous and persistent chemicals identified as contaminants in chlorophenols, herbicides, fly ash and other incineration products. Dioxin-like PCBs including non- and mono-ortho coplanar PCBs are referred to as dioxin related compounds and are evaluated on par with PCDD/Fs in environmental risks since they have a high toxicity, similar to that of PCDD/Fs. These congeners have a range of physicochemical characteristics, which profoundly affect their persistence, environmental distribution, and bioaccumulation in aquatic food chains. Fish-eating wildlife such as marine mammals are particularly vulnerable to such contamination given their long lives, high trophic level, relative inability to metabolize many persistent organic pollutants (POPs), and the biomagnification of these contaminants in aquatic food chains. However, most studies dealing with PCDDs and PCDFs in marine mammals have been carried out on pinnipeds, and data on PCDD/Fs levels in cetaceans are scarce. The present study is aimed at understanding the recent pattern of contamination by dioxin related compounds including non- and mono-ortho coplanar PCBs and PCDD/Fs in three cetacean species collected from Japanese coastal waters during 1998-2001, and also to discuss the factors determining the accumulation.

  16. Biofilm inhibition activity of compounds isolated from two Eunicea species collected at the Caribbean Sea

    Directory of Open Access Journals (Sweden)

    Yenny Martínez Díaz

    2015-12-01

    Full Text Available Abstract Biofilm has a primary role in the pathogenesis of diseases and in the attachment of multicellular organisms to a fouled surface. Because of that, the control of bacterial biofilms has been identified as an important target. In the present study, five lipid compounds isolated from soft coral Eunicea sp. and three terpenoids together with a mixture of sterols from Eunicea fusca collected at the Colombian Caribbean Sea showed different effectiveness against biofilm formation by three marine bacteria associated with immersed fouled surfaces, Ochrobactrum pseudogringnonense,Alteromona macleodii and Vibrio harveyi, and against two known biofilm forming bacteria, Pseudomonas aeruginosa ATCC 27853 and Staphylococcus aureus ATCC 25923. The pure compounds were characterized by NMR, HRESI-MS, HRGC-MS and optical rotation. The most effective compounds were batyl alcohol (1 and fuscoside E peracetate (6, acting against four strains without affecting their microbial growth. Compound 1 showed biofilm inhibition greater than 30% against A. macleodii, and up to 60% against O. pseudogringnonense,V. harveyi and S. aureus. Compound 6 inhibited O. pseudogringnonense and V. harveyi between 25 and 50%, and P. aeruginosa or S. aureus up to 60% at 0.5 mg/ml. The results suggest that these compounds exhibit specific biofilm inhibition with lower antimicrobial effect against the bacterial species assayed.

  17. Occurrence of Vibrio and Salmonella species in mussels (Mytilus galloprovincialis) collected along the Moroccan Atlantic coast.

    Science.gov (United States)

    Mannas, Hasna; Mimouni, Rachida; Chaouqy, Noureddine; Hamadi, Fatima; Martinez-Urtaza, Jaime

    2014-01-01

    This study reports the occurrence of different Vibrio and Salmonella species in 52 samples of Mytilus galloprovincialis collected from four sites along the Atlantic coast between Agadir and Essaouira (Anza, Cap Ghir, Imssouane and Essaouira). The level of Escherichia coli (E. coli) was also determined to evaluate the degree of microbial pollution in the investigated areas. In this study three methods were used : AFNOR NF EN ISO 6579 V08-013 for Salmonella spp., the provisional method routinely used by several laboratories (Institut Pasteur, Paris,…) for Vibrio cholerae and Vibrio parahaemolyticus in the seafood, and the most probable number method (MPN) using Norm ISO/TS 16649-3 (2005) for E. coli. The most frequently isolated Vibrios were Vibrio alginolyticus (90.4% of samples), followed by V. cholerae non O1 non O139 (15.4%) and V. parahaemolyticus (7.7%). Salmonella spp. was found in 15% of the samples. The number of E. coli ranged between 0.2/100 g and 1.8 10(3) /100 g of mussel soft tissues. This study indicates the potential sanitary risk associated with the presence of pathogenic bacteria in cultivated mussels in the two populous regions of southern Morocco, where shellfish production and maritime tourism are important to the local economy.

  18. Biodegradation of p-nitrophenol via 1,2,4-benzenetriol by an Arthrobacter sp.

    Energy Technology Data Exchange (ETDEWEB)

    Jain, R.K.; Spain, J.C. [Armstrong Lab., Tyndall Air Force Base, FL (United States); Dreisbach, J.H. [Univ. of Scranton, PA (United States)

    1994-08-01

    The degradation of p-nitrophenol (PNP) by Moraxella and Pseudomonas spp. involves an initial monooxygenase-catalyzed removal of the nitro group. The resultant hydroquinone is subject to ring fission catalyzed by a dioxygenase enzyme. A strain of an Arthrobacter sp. JS443, capable of degrading PNP with stoichiometric release of nitrite has been isolated. During induction of the enzymes required for growth on PNP, 1,2,4-benzenetriol was identified as an intermediate by gas chromatography-mass spectroscopy and radiotracer studies. 1,2,4-Benzenetriol was converted to maleylacetic acid, which was further degraded by the beta-ketoadipate pathway. Conversion of PNP to 1,2,4-benzenetriol is catalyzed by a monooxygenase system in strain JS443 through the formation of 4-nitrocatechol, 4-nitroresorcinol, or both. Results clearly indicate the existence of an alternative pathway for the biodegradation of PNP. 15 refs, 2 figs., 2 tabs.

  19. Scientific heritage of Alexandru Roşca: publications, spider collection, described species

    Directory of Open Access Journals (Sweden)

    Fedoriak, Mariia

    2016-04-01

    During the period 1931–1939, Roşca described 13 spider species. To date, five species names have been synonymised. We propose that six species should be treated as nomina dubia because of their poor descriptions and lack of availability of types and/or other specimens. For two of Roşca’s species, Pardosa roscai (Roewer, 1951 and Tetragnatha reimoseri (Roşca, 1939, data and figures are presented and information on them is updated.

  20. Molecular Detection of Rickettsia Species Within Ticks (Acari: Ixodidae) Collected from Arkansas United States.

    Science.gov (United States)

    Trout Fryxell, R T; Steelman, C D; Szalanski, A L; Billingsley, P M; Williamson, P C

    2015-05-01

    Rocky Mountain spotted fever (RMSF), caused by the etiological agent Rickettsia rickettsii, is the most severe and frequently reported rickettsial illness in the United States, and is commonly diagnosed throughout the southeast. With the discoveries of Rickettsia parkeri and other spotted fever group rickettsiae (SFGR) in ticks, it remains inconclusive if the cases reported as RMSF are truly caused by R. rickettsii or other SFGR. Arkansas reports one of the highest incidence rates of RMSF in the country; consequently, to identify the rickettsiae in Arkansas, 1,731 ticks, 250 white-tailed deer, and 189 canines were screened by polymerase chain reaction (PCR) for the rickettsial genes gltA, rompB, and ompA. None of the white-tailed deer were positive, while two of the canines (1.1%) and 502 (29.0%) of the ticks were PCR positive. Five different tick species were PCR positive: 244 (37%) Amblyomma americanum L., 130 (38%) Ixodes scapularis Say, 65 (39%) Amblyomma maculatum (Koch), 30 (9%) Rhipicephalus sanguineus Latreille, 7 (4%) Dermacentor variabilis Say, and 26 (44%) unidentified Amblyomma ticks. None of the sequenced products were homologous to R. rickettsii. The most common Rickettsia via rompB amplification was Rickettsia montanensis and nonpathogenic Candidatus Rickettsia amblyommii, whereas with ompA amplification the most common Rickettsia was Ca. R. amblyommii. Many tick specimens collected in northwest Arkansas were PCR positive and these were commonly A. americanum harboring Ca. R. amblyommii, a currently nonpathogenic Rickettsia. Data reported here indicate that pathogenic R. rickettsii was absent from these ticks and suggest by extension that other SFGR are likely the causative agents for Arkansas diagnosed RMSF cases.

  1. Detection of multiple Bartonella species in digestive and reproductive tissues of fleas collected from sympatric mammals.

    Science.gov (United States)

    Brinkerhoff, R Jory; Kabeya, Hidenori; Inoue, Kai; Bai, Ying; Maruyama, Soichi

    2010-07-01

    At least 12 species in the genus Bartonella are zoonotic pathogens that may be transmitted among mammalian hosts by fleas or other arthropods. Apparent host specificity by some Bartonella species to mammalian hosts has been observed, and the detection of multiple Bartonella species in mammalian fleas suggests that fleas take bloodmeals from a variety of host species. However, many flea species are observed to parasitize a narrow host range. Therefore, we suspect that fleas may acquire Bartonella by a mechanism other than ingesting infectious blood. We found that detection of multiple Bartonella genotypes and species is apparently common in fleas and that the majority of fleas tested (5/9) carried Bartonella species atypical of their hosts. We also detected Bartonella DNA in flea reproductive tissues, suggesting that vertical transmission of this organism in vectors is possible, potentially leading to the accumulation of Bartonella diversity over time within fleas.

  2. Improved molecular detection of Ehrlichia and Anaplasma species applied to Amblyomma ticks collected from cattle and sheep in Ethiopia.

    Science.gov (United States)

    Teshale, S; Geysen, D; Ameni, G; Asfaw, Y; Berkvens, D

    2015-02-01

    Detection of Ehrlichia and Anaplasma species in animals and tick vectors is crucial for an understanding of the epidemiology of diseases caused by these pathogens. In this study, a pair of primers designated EBR2 and EBR3 was designed from the Anaplasma 16S rDNA sequence and was used along with a previously described primer EHR 16SD for the simultaneous detection of Ehrlichia and Anaplasma species by nested PCR. The primers were used to amplify 925bp of DNA from known species of Ehrlichia and Anaplasma. Restriction with MboII and MspI enzymes allowed Ehrlichia and Anaplasma speciation. Restriction with MboII differentiated between An. marginale, Anaplasma (formerly Ehrlichia) sp. Omatjenne, and An. centrale with An. marginale and Anaplasma (formerly Ehrlichia) sp. Omatjenne yielding 2 distinct fragments each while An. centrale produced 3 distinct bands. Ehrlichia ruminantium and An. phagocytophylum remained undigested. Subsequent restriction with MspI differentiated E. ruminantium from An. phagocytophylum with 2 and 4 fragments, respectively. When used on tick samples from the field, 63 ticks (16.4%) out of 384 collected from cattle and sheep were positive for one or more species of Ehrlichia and Anaplasma. The positivity ranged from 6.3% at Andasa to 36.7% at Habernosa. Higher overall infection rates were found in Amblyomma lepidum than in Amblyomma variegatum ticks (p=0.009). Amblyomma lepidum from Habernosa were more often infected with all detected species of Anaplasma and Ehrlichia than Am. variegatum. At Bako, however, Anaplasma (formerly Ehrlichia) sp. Omatjenne was detected only in Am. variegatum. A significantly higher proportion of ticks collected from cattle (20.6%) was found positive than in those collected from sheep (3.3%) (p=0.003). Simultaneous detection of Ehrlichia and Anaplasma species and correct identification of mixed infections was possible. Since the ticks were collected from animals, the occurrence of the major species of Ehrlichia and

  3. Further records and descriptions of Bactra species (Lepidoptera, Tortricidae), chiefly in Dr. H.G. Amsel collection

    NARCIS (Netherlands)

    Diakonoff, A.

    1959-01-01

    The present short paper forms a continuation of my partial revision of certain species of the genus Bactra (Zool. Verhand., no. 29, 1956). It is chiefly based on a revision of the entire material of Bactra in the collection of the well-known specialist of Microlepidoptera, Dr. H. G. AMSEL, Karlsruhe

  4. Robustness and accuracy of Maxent niche modelling for Lactuca species distributions in light of collecting expeditions

    NARCIS (Netherlands)

    Cobben, M.M.P.; Treuren, van R.; Castaneda-Alvarez, N.P.; Khoury, C.K.; Kik, C.; Hintum, van T.J.L.

    2015-01-01

    Niche modelling software can be used to assess the probability of detecting a population of a plant species at a certain location. In this study, we used the distribution of the wild relatives of lettuce (Lactuca spp.) to investigate the applicability of Maxent species distribution models for collec

  5. A collection of Australian Drosophila datasets on climate adaptation and species distributions.

    Science.gov (United States)

    Hangartner, Sandra B; Hoffmann, Ary A; Smith, Ailie; Griffin, Philippa C

    2015-11-24

    The Australian Drosophila Ecology and Evolution Resource (ADEER) collates Australian datasets on drosophilid flies, which are aimed at investigating questions around climate adaptation, species distribution limits and population genetics. Australian drosophilid species are diverse in climatic tolerance, geographic distribution and behaviour. Many species are restricted to the tropics, a few are temperate specialists, and some have broad distributions across climatic regions. Whereas some species show adaptability to climate changes through genetic and plastic changes, other species have limited adaptive capacity. This knowledge has been used to identify traits and genetic polymorphisms involved in climate change adaptation and build predictive models of responses to climate change. ADEER brings together 103 datasets from 39 studies published between 1982-2013 in a single online resource. All datasets can be downloaded freely in full, along with maps and other visualisations. These historical datasets are preserved for future studies, which will be especially useful for assessing climate-related changes over time.

  6. Sapphire: a better material for atomization and in situ collection of silver volatile species for atomic absorption spectrometry

    Energy Technology Data Exchange (ETDEWEB)

    Musil, Stanislav, E-mail: stanomusil@biomed.cas.cz; Matoušek, Tomáš; Dědina, Jiří

    2015-06-01

    Sapphire is presented as a high temperature and corrosion resistant material of an optical tube of an atomizer for volatile species of Ag generated by the reaction with NaBH{sub 4}. The modular atomizer design was employed which allowed to carry out the measurements in two modes: (i) on-line atomization and (ii) in situ collection (directly in the optical tube) by means of excess of O{sub 2} over H{sub 2} in the carrier gas during the trapping step and vice versa in the volatilization step. In comparison with quartz atomizers, the sapphire tube atomizer provides a significantly increased atomizer lifetime as well as substantially improved repeatability of the Ag in situ collection signals shapes. In situ collection of Ag in the sapphire tube atomizer was highly efficient (> 90%). Limit of detection in the on-line atomization mode and in situ collection mode, respectively, was 1.2 ng ml{sup −1} and 0.15 ng ml{sup −1}. - Highlights: • Sapphire was tested as a new material of an atomizer tube for Ag volatile species. • Two measurement modes were investigated: on-line atomization and in situ collection. • In situ collection of Ag was highly efficient (> 90%) with LOD of 0.15 ng ml{sup −1}. • No devitrification of the sapphire tube observed in the course of several months.

  7. Effects of two kinds of imidazolium-based ionic liquids on the characteristics of steroid-transformation Arthrobacter simplex

    OpenAIRE

    Shen, Yanbing; Wang, Lifang; Liang, Jingting; Rui TANG; WANG, Min

    2016-01-01

    Background Ionic liquids (ILs) are a promising alternative for organic solvents because these liquids exhibit unique properties and enhanced steroid 1-dehydrogenation biotransformation caused by Arthrobacter simplex CPCC 140451 (ASP). However, the effect of ILs on the whole cell itself remains poorly understood and must be further investigated. Results A comparative investigation was performed to determine the effect of imidazolium-based ILs, namely, hydrophobic [PrMIm]PF6, and hydrophilic [P...

  8. Low temperature reduction of hexavalent chromium by a microbial enrichment consortium and a novel strain of Arthrobacter aurescens

    Directory of Open Access Journals (Sweden)

    Thompson Vicki S

    2006-01-01

    Full Text Available Abstract Background Chromium is a transition metal most commonly found in the environment in its trivalent [Cr(III] and hexavalent [Cr(VI] forms. The EPA maximum total chromium contaminant level for drinking water is 0.1 mg/l (0.1 ppm. Many water sources, especially underground sources, are at low temperatures (less than or equal to 15 Centigrade year round. It is important to evaluate the possibility of microbial remediation of Cr(VI contamination using microorganisms adapted to these low temperatures (psychrophiles. Results Core samples obtained from a Cr(VI contaminated aquifer at the Hanford facility in Washington were enriched in Vogel Bonner medium at 10 Centigrade with 0, 25, 50, 100, 200, 400 and 1000 mg/l Cr(VI. The extent of Cr(VI reduction was evaluated using the diphenyl carbazide assay. Resistance to Cr(VI up to and including 1000 mg/l Cr(VI was observed in the consortium experiments. Reduction was slow or not observed at and above 100 mg/l Cr(VI using the enrichment consortium. Average time to complete reduction of Cr(VI in the 30 and 60 mg/l Cr(VI cultures of the consortium was 8 and 17 days, respectively at 10 Centigrade. Lyophilized consortium cells did not demonstrate adsorption of Cr(VI over a 24 hour period. Successful isolation of a Cr(VI reducing organism (designated P4 from the consortium was confirmed by 16S rDNA amplification and sequencing. Average time to complete reduction of Cr(VI at 10 Centigrade in the 25 and 50 mg/l Cr(VI cultures of the isolate P4 was 3 and 5 days, respectively. The 16S rDNA sequence from isolate P4 identified this organism as a strain of Arthrobacter aurescens, a species that has not previously been shown to be capable of low temperature Cr(VI reduction. Conclusion A. aurescens, indigenous to the subsurface, has the potential to be a predominant metal reducer in enhanced, in situ subsurface bioremediation efforts involving Cr(VI and possibly other heavy metals and radionuclides.

  9. Taxonomy and new collections of wild potato species in Central and Southern Peru in 1999

    NARCIS (Netherlands)

    Salas, A.R.; Spooner, D.M.; Huamán, Z.; Torres Maita, R.V.; Hoekstra, R.; Schüler, K.; Hijmans, R.J.

    2001-01-01

    Peru contains about half of the described wild potato taxa, and many of these are not yet preserved in genebanks. This paper reports results of the second of a series of five planned collecting expeditions to Peru. Collections were made in the central Peruvian departments of Ancash, Huancavelica, La

  10. Remarks on the species of Matuta Fabr. in the collection of the Leyden Museum

    NARCIS (Netherlands)

    Man, de J.G.

    1881-01-01

    The carcinological collection of our Museum contains no less than 270 specimens of the genus Matuta Fabr., preserved in spirits, collected in the seas of the Indo-Pacific Region, from the shores of the Red Sea to those of the eastern islands of the Malayan Archipelago. They belong to six different s

  11. s-triazine degrading bacterial isolate Arthrobacter sp. AK-YN10, a candidate for bioaugmentation of atrazine contaminated soil.

    Science.gov (United States)

    Sagarkar, Sneha; Bhardwaj, Pooja; Storck, Veronika; Devers-Lamrani, Marion; Martin-Laurent, Fabrice; Kapley, Atya

    2016-01-01

    The Arthrobacter sp. strain AK-YN10 is an s-triazine pesticide degrading bacterium isolated from a sugarcane field in Central India with history of repeated atrazine use. AK-YN10 was shown to degrade 99 % of atrazine in 30 h from media supplemented with 1000 mg L(-1) of the herbicide. Draft genome sequencing revealed similarity to pAO1, TC1, and TC2 catabolic plasmids of the Arthrobacter taxon. Plasmid profiling analyses revealed the presence of four catabolic plasmids. The trzN, atzB, and atzC atrazine-degrading genes were located on a plasmid of approximately 113 kb.The flagellar operon found in the AK-YN10 draft genome suggests motility, an interesting trait for a bioremediation agent, and was homologous to that of Arthrobacter chlorophenolicus. The multiple s-triazines degradation property of this isolate makes it a good candidate for bioremediation of soils contaminated by s-triazine pesticides.

  12. Divergent chemical cues elicit seed collecting by ants in an obligate multi-species mutualism in lowland Amazonia.

    Science.gov (United States)

    Youngsteadt, Elsa; Guerra Bustios, Patricia; Schal, Coby

    2010-12-30

    In lowland Amazonian rainforests, specific ants collect seeds of several plant species and cultivate them in arboreal carton nests, forming species-specific symbioses called ant-gardens (AGs). In this obligate mutualism, ants depend on the plants for nest stability and the plants depend on ant nests for substrate and nutrients. AG ants and plants are abundant, dominant members of lowland Amazonian ecosystems, but the cues ants use to recognize the seeds are poorly understood. To address the chemical basis of the ant-seed interaction, we surveyed seed chemistry in nine AG species and eight non-AG congeners. We detected seven phenolic and terpenoid volatiles common to seeds of all or most of the AG species, but a blend of the shared compounds was not attractive to the AG ant Camponotus femoratus. We also analyzed seeds of three AG species (Anthurium gracile, Codonanthe uleana, and Peperomia macrostachya) using behavior-guided fractionation. At least one chromatographic fraction of each seed extract elicited retrieval behavior in C. femoratus, but the active fractions of the three plant species differed in polarity and chemical composition, indicating that shared compounds alone did not explain seed-carrying behavior. We suggest that the various AG seed species must elicit seed-carrying with different chemical cues.

  13. Divergent chemical cues elicit seed collecting by ants in an obligate multi-species mutualism in lowland Amazonia.

    Directory of Open Access Journals (Sweden)

    Elsa Youngsteadt

    Full Text Available In lowland Amazonian rainforests, specific ants collect seeds of several plant species and cultivate them in arboreal carton nests, forming species-specific symbioses called ant-gardens (AGs. In this obligate mutualism, ants depend on the plants for nest stability and the plants depend on ant nests for substrate and nutrients. AG ants and plants are abundant, dominant members of lowland Amazonian ecosystems, but the cues ants use to recognize the seeds are poorly understood. To address the chemical basis of the ant-seed interaction, we surveyed seed chemistry in nine AG species and eight non-AG congeners. We detected seven phenolic and terpenoid volatiles common to seeds of all or most of the AG species, but a blend of the shared compounds was not attractive to the AG ant Camponotus femoratus. We also analyzed seeds of three AG species (Anthurium gracile, Codonanthe uleana, and Peperomia macrostachya using behavior-guided fractionation. At least one chromatographic fraction of each seed extract elicited retrieval behavior in C. femoratus, but the active fractions of the three plant species differed in polarity and chemical composition, indicating that shared compounds alone did not explain seed-carrying behavior. We suggest that the various AG seed species must elicit seed-carrying with different chemical cues.

  14. Zooplankton species identities, zooplankton species number per sample, and zooplankton abundance collected using zooplankton net as part of the California Cooperative Fisheries Investigation (CALCOFI) project, for 1994-03-01 (NODC Accession 9700104)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Zooplankton species identities, zooplankton species number per sample, and zooplankton abundance were collected from March 1, 1994 to March 1, 1994. Data were...

  15. Four new species and one new subspecies of Asteroidea (Echinodermata) collected by the “Siboga” Expedition in the Indo-Malayan region

    NARCIS (Netherlands)

    Aziz, Aznam; Jangoux, Michel

    1985-01-01

    Four new species and one new subspecies of asteroids collected by the “Siboga” Expedition in the Indo-Malayan region are described. They are deep-water species belonging to the families Goniasteridae, Solasteridae, Ganeriidae, Asteriidae and Brisingidae.

  16. A method for the production of D-tagatose using a recombinant Pichia pastoris strain secreting β-D-galactosidase from Arthrobacter chlorophenolicus and a recombinant L-arabinose isomerase from Arthrobacter sp. 22c

    Directory of Open Access Journals (Sweden)

    Wanarska Marta

    2012-08-01

    Full Text Available Abstract Background D-Tagatose is a natural monosaccharide which can be used as a low-calorie sugar substitute in food, beverages and pharmaceutical products. It is also currently being tested as an anti-diabetic and obesity control drug. D-Tagatose is a rare sugar, but it can be manufactured by the chemical or enzymatic isomerization of D-galactose obtained by a β-D-galactosidase-catalyzed hydrolysis of milk sugar lactose and the separation of D-glucose and D-galactose. L-Arabinose isomerases catalyze in vitro the conversion of D-galactose to D-tagatose and are the most promising enzymes for the large-scale production of D-tagatose. Results In this study, the araA gene from psychrotolerant Antarctic bacterium Arthrobacter sp. 22c was isolated, cloned and expressed in Escherichia coli. The active form of recombinant Arthrobacter sp. 22c L-arabinose isomerase consists of six subunits with a combined molecular weight of approximately 335 kDa. The maximum activity of this enzyme towards D-galactose was determined as occurring at 52°C; however, it exhibited over 60% of maximum activity at 30°C. The recombinant Arthrobacter sp. 22c L-arabinose isomerase was optimally active at a broad pH range of 5 to 9. This enzyme is not dependent on divalent metal ions, since it was only marginally activated by Mg2+, Mn2+ or Ca2+ and slightly inhibited by Co2+ or Ni2+. The bioconversion yield of D-galactose to D-tagatose by the purified L-arabinose isomerase reached 30% after 36 h at 50°C. In this study, a recombinant Pichia pastoris yeast strain secreting β-D-galactosidase Arthrobacter chlorophenolicus was also constructed. During cultivation of this strain in a whey permeate, lactose was hydrolyzed and D-glucose was metabolized, whereas D-galactose was accumulated in the medium. Moreover, cultivation of the P. pastoris strain secreting β-D-galactosidase in a whey permeate supplemented with Arthrobacter sp. 22c L-arabinose isomerase resulted in a 90% yield

  17. Harvest Records for Game Species Collected at Morgan Brake National Wildlife Refuges in 1997 and 1998

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — These records were taken by Refuge employees at check stations between 1997 and 1998 involving archery, muzzle loading, and multiple game species

  18. Zooplankton species identities collected from zooplankton net casts in Indian Ocean from 17 February 1960 to 23 July 1962 (NODC Accession 9400059)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Zooplankton species identities and other data were collected using zooplankton net casts in the Indian Ocean. Data were collected from 17 February 1960 to 23 July...

  19. Grassland Species Collected in an Area of the Amazon Dense Rain Forest Southern

    Directory of Open Access Journals (Sweden)

    J. M. P. Florentino

    2013-07-01

    Full Text Available Abstract: The knowledge related to floristic composition and all strata, including herbaceous, are needed to characterize and understand the dynamics of tropical forests. This study aimed to investigate the floristic composition of herbs in an area of ??tropical rain forest of Mato Grosso, producing a list of herbaceous species are on site. All individuals and herbaceous hemiepiphytes above 5 cm were recorded. Inventoried 7,965 individuals, representing 70 species. The angiosperms were represented by 10 families, with the most representative families in number of species Cyperaceae and Poaceae. Ferns were represented by 13 families, the family Pteridaceae as the richest in species. These results reinforce the need to increase the sampling effort for the herbaceous layer, especially floristic surveys for Southern Amazon as of 70 species inventoried 11espies not have records for the state of Mato Grosso. The Amazon of Mato Grosso suffers severe pressure from deforestation, as part of the region known as the Arc of Deforestation. This fact combined with the results of this work shows the urgency to intensify the sampling effort in this region that presents itself as a void in terms of surveys of plant diversity.Keywords: floristic composition, plant diversity, ferns

  20. Detection of inter-species contaminations in a cell line collection using isoenzymes and molecular markers

    Directory of Open Access Journals (Sweden)

    M. Ferarri

    2011-03-01

    Full Text Available As in human research, also in livestock species the use of continuous cell cultures is an important tool for the study of physiological and tissue developmental processes, as well as for immunological, virological and toxicological assays. This widespread use of animal cell cultures needs that quality control tests are systematically performed in order to evaluate the authenticity of the cells used. Cell cross-contamination (CCC can occur with cells from other species (interspecies contamination or with unrelated cells from the same species (intraspecies contamination. Several methods have been used to identify inter- and intraspecies CCC: isoenzyme profile (Nims, 1998, cytogenetic analysis (Macville et al., 1996, DNA fingerprinting (Stacey et al., 1992, and, more recently, PCR-based methods (Matsuo et al., 1999. Amplified Fragment Length Polymorphism (AFLP technology is a PCR-based technique (Vos et al., 1995 able to reveal polymorphism, with no need of prior sequence information or probe isolation..........

  1. Chemical composition and digestibility of some browse plant species collected from Algerian arid rangelands

    Energy Technology Data Exchange (ETDEWEB)

    Boufennara, S.; Lopez, S.; Boussebouna, H.; Bodas, R.; Bouazza, L.

    2012-11-01

    Many wild browse and bush species are undervalued mainly because of insufficient knowledge about their potential feeding value. The objective was to evaluate some nutritional attributes of various Algerian browse and shub species (Atriplex halimus, Artemisia campestris, Artemisia herba-alba, Astragalus gombiformis, Calobota saharae, Retama raetam, Stipagrostis pungens, Lygeum spartum and Stipa tenacissima). Chemical composition, phenols and tannins concentration, in vitro digestibility, in vitro gas production kinetics and in vitro bio-assay for assessment of tannins using buffered rumen fluid, and in situ disappearence of the edible parts of the plants (leaves, thin twigs and flowers) were determined. In general, protein content in dicotyledon species was always greater than in monocotyledon grasses, these showing higher neutral and acid detergent fibre and lower lignin contents than dicots. The tannin concentrations varied considerably between species, but in general the plants investigated in this study had low tannin contents (except for Artemisia spp. and S. tenacissima). Monocots showed lower in vitro and in situ digestibilities, fermentation rate, cumulative gas production and extent of degradation than dicot species. The plants were clustered by principal components analysis in two groups: poor-quality grasses and the most digestible dicot species. Chemical composition (neutral detergent fibre and protein) and digestibility were the main influential variables determining the ranking. In conclusion, A. halimus, A. campestris, A. herba-alba and A. gombiformis can be considered of greater nutritional value than the highly fibrous and low digestible grasses (S. pungens, L. spartum and S. tenacissima) that should be considered emergency roughages. (Author) 46 refs.

  2. Toxicity screening of soils from different mine areas—A contribution to track the sensitivity and variability of Arthrobacter globiformis assay

    Energy Technology Data Exchange (ETDEWEB)

    Marques, Catarina R., E-mail: crmarques@ua.pt [Departamento de Biologia and CESAM (Centro de Estudos do Ambiente e do Mar), Universidade de Aveiro, Campus Universitário de Santiago, 3810-193 Aveiro (Portugal); Caetano, Ana L. [Departamento de Biologia and CESAM (Centro de Estudos do Ambiente e do Mar), Universidade de Aveiro, Campus Universitário de Santiago, 3810-193 Aveiro (Portugal); Haller, Andreas [ECT Oekotoxikologie GmbH, Böttgerstraße 2–14, D-65439 Flörsheim a. M. (Germany); Gonçalves, Fernando [Departamento de Biologia and CESAM (Centro de Estudos do Ambiente e do Mar), Universidade de Aveiro, Campus Universitário de Santiago, 3810-193 Aveiro (Portugal); Pereira, Ruth [Faculdade de Ciências da Universidade do Porto, Rua do Campo Alegre, s/n, 4169-007 Porto (Portugal); Interdisciplinary Centre of Marine and Environmental Research (CIIMAR/CIMAR), Universidade do Porto, Rua dos Bragas 289, P 4050-123 Porto (Portugal); Römbke, Jörg [ECT Oekotoxikologie GmbH, Böttgerstraße 2–14, D-65439 Flörsheim a. M. (Germany)

    2014-06-01

    Highlights: • The assay gave rapid and feasible discrimination of toxic soils to A. globiformis. • Sensitive and low variability response to soils from different regions. • Soil properties may interfere with metal toxicity and fluorescence measurements. • Proposal of a toxicity threshold for the contact assay regarding soils. • A. globiformis assay should be included in the Tier I of risk assessment frameworks. - Abstract: This study used the Arthrobacter globiformis solid-contact test for assessing the quality of soils collected in areas subjected to past and present mine activities in Europe (uranium mine, Portugal) and North Africa (phosphogypsum pile, Tunisia; iron mine, Morocco). As to discriminate the influence of soils natural variability from the effect of contaminants, toxicity thresholds were derived for this test, based on the dataset of each study area. Furthermore, the test sensitivity and variability was also evaluated. As a result, soils that inhibited A. globiformis dehydrogenase activity above 45% or 50% relatively to the control, were considered to be toxic. Despite the soil metal content determined, the properties of soils seemed to influence dehydrogenase activity. Overall, the contact test provided a coherent outcome comparing to other more time-consuming and effort-demanding ecotoxicological assays. Our results strengthened the feasibility and ecological relevance of this assay, which variability was quite reduced hence suggesting its potential integration within the test battery of tier 1 of soil risk assessment schemes.

  3. California dragonfly and damselfly (Odonata) database: temporal and spatial distribution of species records collected over the past century.

    Science.gov (United States)

    Ball-Damerow, Joan E; Oboyski, Peter T; Resh, Vincent H

    2015-01-01

    The recently completed Odonata database for California consists of specimen records from the major entomology collections of the state, large Odonata collections outside of the state, previous literature, historical and recent field surveys, and from enthusiast group observations. The database includes 32,025 total records and 19,000 unique records for 106 species of dragonflies and damselflies, with records spanning 1879-2013. Records have been geographically referenced using the point-radius method to assign coordinates and an uncertainty radius to specimen locations. In addition to describing techniques used in data acquisition, georeferencing, and quality control, we present assessments of the temporal, spatial, and taxonomic distribution of records. We use this information to identify biases in the data, and to determine changes in species prevalence, latitudinal ranges, and elevation ranges when comparing records before 1976 and after 1979. The average latitude of where records occurred increased by 78 km over these time periods. While average elevation did not change significantly, the average minimum elevation across species declined by 108 m. Odonata distribution may be generally shifting northwards as temperature warms and to lower minimum elevations in response to increased summer water availability in low-elevation agricultural regions. The unexpected decline in elevation may also be partially the result of bias in recent collections towards centers of human population, which tend to occur at lower elevations. This study emphasizes the need to address temporal, spatial, and taxonomic biases in museum and observational records in order to produce reliable conclusions from such data.

  4. On a collection of Leucosioidea (Crustacea, Decapoda, Brachyura from Papua New Guinea, with the description of a new species

    Directory of Open Access Journals (Sweden)

    Bella S. Galil

    2015-11-01

    Full Text Available The collection of deep-sea pebble crabs (Leucosioidea during the BIOPAPUA Expedition, comprising 8 species, including a species new to science, is significant because although the previously described species had not been recorded from the Bismarck and western Solomon Seas, they occurred in at least one nearby location (New Caledonia, Vanuatu, Solomon Is. Praebebalia fungifera sp. nov. is described and illustrated. It differs from its closest congener, P. septemspinosa Sakai, 1983, in bearing fungiform granules dorsally on carapace, shorter chelipeds, the relatively stout male first gonopod with a preapical row of setae and the beak-like tip, as compared to the rounded granules dorsally on the carapace, greatly elongate chelipeds and the slim, elongate, distally curved gonopod of P. septemspinosa, preapically set with very long setae and a hook-like tip.

  5. Detection of Vibrio cholerae and Acanthamoeba species from same natural water samples collected from different cholera endemic areas in Sudan

    Directory of Open Access Journals (Sweden)

    Saeed Amir

    2011-04-01

    Full Text Available Abstract Background Vibrio cholerae O1 and V. cholerae O139 infect humans, causing the diarrheal and waterborne disease cholera, which is a worldwide health problem. V. cholerae and the free-living amoebae Acanthamoeba species are present in aquatic environments, including drinking water and it has shown that Acanthamoebae support bacterial growth and survival. Recently it has shown that Acanthamoeba species enhanced growth and survival of V. cholerae O1 and O139. Water samples from different cholera endemic areas in Sudan were collected with the aim to detect both V. cholerae and Acanthamoeba species from same natural water samples by polymerase chain reaction (PCR. Findings For the first time both V. cholerae and Acanthamoeba species were detected in same natural water samples collected from different cholera endemic areas in Sudan. 89% of detected V. cholerae was found with Acanthamoeba in same water samples. Conclusions The current findings disclose Acanthamoedae as a biological factor enhancing survival of V. cholerae in nature.

  6. Adenylate nucleotide levels and energy charge in Arthrobacter crystallopoietes during growth and starvation.

    Science.gov (United States)

    Leps, W T; Ensign, J C

    1979-07-01

    The adenylate nucleotide concentrations, based on internal water space, were determined in cells of Arthrobacter crystallopoietes during growth and starvation and the energy charge of the cells was calculated. The energy charge of spherical cells rose during the first 10 h of growth, then remained nearly constant for as long as 20 h into the stationary phase. The energy charge of rod-shaped cells rose during the first 4 h of growth, then remained constant during subsequent growth and decreased in the stationary growth phase. Both spherical and rod-shaped cells excreted adenosine monophosphate but not adenosine triphosphate or adenosine diphosphate during starvation. The intracellular energy charge of spherical cells declined during the initial 10 h and then remained constant for 1 week of starvation at a value of 0.78. The intracellular energy charge of rod-shaped cells declined during the first 24 h of starvation, remained constant for the next 80 h, then decreased to a value of 0.73 after a total of 168 h starvation. Both cell forms remained more than 90% viable during this time. Addition of a carbon and energy source to starving cells resulted in an increase in the ATP concentration and as a result the energy charge increased to the smae levels as found during growth.

  7. Biodegradation of Benzo[a]pyrene by Arthrobacter oxydans B4

    Institute of Scientific and Technical Information of China (English)

    PENG Hui; YIN Hua; DENG Jun; YE Jin-Shao; CHEN Shuo-Na; HE Bao-Yan; ZHANG Na

    2012-01-01

    A bacterial strain,Arthrobacter oxydans (B4),capable of degrading benzo[a]pyrene (BaP) in water body,was isolated from a polycyclic aromatic hydrocarbons-contaminated site.Effects of different factors,such as reaction time,pH value,temperature and organic nutrients,on BaP biodegradation by the strain B4 were studied.After 5 d treatment,the concentration of BaP in mineral salts medium was reduced to 0.318 mg L-1,compared to the initial concentration of 1.000 mg L-1.There was a process of acid formation during the degradation with pH failing from initial 7.01 to 4.61 at 5 d,so keeping the water body under slightly alkaline condition was propitious to BaP degradation.Strain B4 efficiently degraded BaP at 20 to 37 ℃ with addition of organic nutrients.The biodegradation and transformation of BaP mainly occurred on cell surfaces,and extracellular secretions played an important role in these processes.Fourier transform infrared spectroscopy and gas chromatograph-mass spectrometer analyses of metabolites showed that ring cleavage occurred in the BaP degradation process and the resulting metabolically utilizable substrates were generated as sole carbon sources for B4 growth.Furthermore,mineralization extent of metabolites was verified by determining the total organic carbon and inorganic carbon in the degradation system.

  8. Plasmid-encoded degradation of p-nitrophenol and 4-nitrocatechol by Arthrobacter protophormiae.

    Science.gov (United States)

    Chauhan, A; Chakraborti, A K; Jain, R K

    2000-04-21

    Arthrobacter protophormiae strain RKJ100 is capable of utilizing p-nitrophenol (PNP) as well as 4-nitrocatechol (NC) as the sole source of carbon, nitrogen and energy. The degradation of PNP and NC by this microorganism takes place through an oxidative route, as stoichiometry of nitrite molecules was observed when the strain was grown on PNP or NC as sole carbon and energy sources. The degradative pathways of PNP and NC were elucidated on the basis of enzyme assays and chemical characterization of the intermediates by TLC, GC, (1)H NMR, GC-MS, UV spectroscopy, and HPLC analyses. Our studies clearly indicate that the degradation of PNP proceeds with the formation of p-benzoquinone (BQ) and hydroquinone (HQ) and is further degraded via the beta-ketoadipate pathway. Degradation of NC involved initial oxidation to generate 1,2,4-benzenetriol (BT) and 2-hydroxy-1,4-benzoquinone; the latter intermediate is then reductively dehydroxylated, forming BQ and HQ, and is further cleaved via beta-ketoadipate to TCA intermediates. It is likely, therefore, that the same set of genes encode the further metabolism of HQ in PNP and NC degradation. A plasmid of approximately 65 kb was found to be responsible for harboring genes for PNP and NC degradation in this strain. This was based on the fact that PNP(-) NC(-) derivatives were devoid of the plasmid and had simultaneously lost their capability to grow at the expense of these nitroaromatic compounds.

  9. Biodegradation kinetics of 4-fluorocinnamic acid by a consortium of Arthrobacter and Ralstonia strains.

    Science.gov (United States)

    Hasan, Syed A; Wietzes, Piet; Janssen, Dick B

    2012-02-01

    Arthrobacter sp. strain G1 is able to grow on 4-fluorocinnamic acid (4-FCA) as sole carbon source. The organism converts 4-FCA into 4-fluorobenzoic acid (4-FBA) and utilizes the two-carbon side-chain for growth with some formation of 4-fluoroacetophenone as a dead-end side product. We also have isolated Ralstonia sp. strain H1, an organism that degrades 4-FBA. A consortium of strains G1 and H1 degraded 4-FCA with Monod kinetics during growth in batch and continuous cultures. Specific growth rates of strain G1 and specific degradation rates of 4-FCA were observed to follow substrate inhibition kinetics, which could be modeled using the kinetic models of Haldane-Andrew and Luong-Levenspiel. The mixed culture showed complete mineralization of 4-FCA with quantitative release of fluoride, both in batch and continuous cultures. Steady-state chemostat cultures that were exposed to shock loadings of substrate responded with rapid degradation and returned to steady-state in 10-15 h, indicating that the mixed culture provided a robust system for continuous 4-FCA degradation.

  10. Characterization and flocculation mechanism of an alkali-activated polysaccharide flocculant from Arthrobacter sp. B4.

    Science.gov (United States)

    Li, Yumei; Li, Qiang; Hao, Dakui; Hu, Zhiheng; Song, Dongxue; Yang, Min

    2014-10-01

    The characterization and flocculation mechanism of a bioflocculant produced by Arthrobacter sp. B4 were investigated. The bioflocculant's active ingredient was a polysaccharide (B4-PS) that consisted of three main fractions corresponding to the molecular weights of approximately 3.97×10(4)Da, 6.84×10(3)Da and 5.9×10(6)Da, respectively. These fractions were composed of galactose, glucose, mannose and glucuronic acid. Flocculation experiments showed that B4-PS could spontaneously flocculate in the presence of Ca(2+) ions at a high pH (>12.0), followed by the pH reduction to ∼6.0. The self-flocculation of B4-PS may be mediated by ionization and charge neutralization mechanism. Furthermore, B4-PS exhibited excellent capabilities for pollutant removal and pH reduction in alkaline wastewater. These data suggest B4-PS may be a promising tool for use in industrial alkaline wastewater pretreatment.

  11. Isolation and characteristics of Arthrobacter sp. strain CW-1 for biodegradation of PAEs

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    Isolation of new bacterial strains and recognition of their metabolic activities are highly desirable for sustainability of natural ecosystems. Biodegradation of dimethyl phthalate (DMP) under anoxic conditions has been shown to occur as a series of sequential steps using strain CW-1 isolated from digested sludge of Sibao Wastewater Treatment Plant in Hangzhou, China. The microbial colony on LB medium was yellowish, 3~5 mm in diameter, convex in the center, and embedded in mucous externally.The individual cells of strain CW-1 are irregular rods, measuring (0.6~0.7)×(0.9~1.0) μm, V-shaped, with clubbed ends, Gram positive and without any filaments. 16S rDNA (1438 bp) sequence analysis showed that the strain was related to Arthrobacter sp.CW-1 and can degrade PAEs utilizing nitrate as electron acceptor, but cannot mineralize DMP completely. The degradation pathway was recommended as: dimethyl phthalate (DMP)→monomethyl phthalate (MMP)→phthalic acid (PA). DMP biodegradation was a first order reaction with degradation rate constant of 0.3033 d-1 and half-life 2.25 d. The DMP conversion to PA by CW-1 could be described by using sequential kinetic model.

  12. Biodegradation of nitroglycerin in porous media and potential for bioaugmentation with Arthrobacter sp. strain JBH1.

    Science.gov (United States)

    Husserl, Johana; Hughes, Joseph B

    2013-07-01

    Nitroglycerin (NG) is a toxic explosive found as a contaminant of soil and groundwater. Several microbial strains are capable of partially reducing the NG molecule to dinitro or mononitroesters. Recently, a strain capable of growing on NG as the sole source of carbon and nitrogen (Arthrobacter sp. strain JBH1) was isolated from contaminated soil. Despite the widespread presence of microbial strains capable of transforming NG in contaminated soils and sediments, the extent of NG biodegradation at contaminated sites is still unknown. In this study column experiments were conducted to investigate the extent of microbial degradation of NG in saturated porous media, specifically after bioaugmentation with JBH1. Initial experiments using sterile, low sorptivity sand, showed mineralization of NG after bioaugmentation with JBH1 in the absence of sources of carbon and nitrogen other than NG. Results could be modeled using a first order degradation rate of 0.14d(-1). Further experiments conducted using contaminated soil with high organic carbon content (highly sorptive) resulted in column effluents that did not contain NG although high dinitroester concentrations were observed. Bioaugmentation with JBH1 in sediments containing strains capable of partial transformation of NG resulted in complete mineralization of NG and faster degradation rates.

  13. Crystal structure of a lactosucrose-producing enzyme, Arthrobacter sp. K-1 β-fructofuranosidase.

    Science.gov (United States)

    Tonozuka, Takashi; Tamaki, Akiko; Yokoi, Gaku; Miyazaki, Takatsugu; Ichikawa, Megumi; Nishikawa, Atsushi; Ohta, Yukari; Hidaka, Yuko; Katayama, Kinya; Hatada, Yuji; Ito, Tetsuya; Fujita, Koki

    2012-12-10

    Arthrobacter sp. K-1 β-fructofuranosidase (ArFFase), a glycoside hydrolase family 68 enzyme, catalyzes the hydrolysis and transfructosylation of sucrose. ArFFase is useful for producing a sweetener, lactosucrose (4(G)-β-D-galactosylsucrose). The primary structure of ArFFase is homologous to those of levansucrases, although ArFFase catalyzes mostly hydrolysis when incubated with sucrose alone, even at high concentration. Here, we determined the crystal structure of ArFFase in unliganded form and complexed with fructose. ArFFase consisted of a five-bladed β-propeller fold as observed in levansucrases. The structure of ArFFase was most similar to that of Gluconacetobacter diazotrophicus levansucrase (GdLev). The structure of the catalytic cleft of ArFFase was also highly homologous to that of GdLev. However, two amino acid residues, Tyr232 and Pro442 in ArFFase, were not conserved between them. A tunnel observed at the bottom of the catalytic cleft of ArFFase may serve as a water drain or its reservoir.

  14. Development of a core collection of Triticum and Aegilops species for improvement of wheat for activity against chronic diseases

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    Santra Meenakshi

    2013-02-01

    Full Text Available Abstract Background The objective of this study was to develop a core collection of Triticum and Aegilops species as a resource for the identification and characterization of wheat lines with preventive activity against chronic diseases. Given that cancer is the leading cause of mortality in the world and shares risk factors with obesity, type-2 diabetes, and cardiovascular disease, and given that wheat has been reported to protect against these diseases, the core collection was developed based on cancer prevalence. Methods The Germplasm Resources Information Network (GRIN database was used to identify Triticum and Aegilops species grown in regions of the world that vary in cancer prevalence based on the International Agency for Cancer Research GLOBOCAN world map of cancer statistics (2008. Cancer incidence data drove variety selection with secondary consideration of ploidy, center of origin, and climate. Results Analysis indicated that the geographic regions from which wheat is considered to have originated have a lower incidence of cancer than other geographic regions (P Conclusions A diverse core collection of wheat germplasm has been established from a range of regions worldwide. This core collection will be used to identify wheat lines with activity against chronic diseases using anticancer activity as a screening tool.

  15. The Spread of Non-native Plant Species Collection of Cibodas Botanical Garden into Mt. Gede Pangrango National Park

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    Musyarofah Zuhri

    2013-05-01

    Full Text Available The role of botanic garden in spread of non-native plant species has concerned of international worldwide. This study aimed to study the extent of non-native plant species from Cibodas Botanical Garden (CBG which invades into natural rainforest. A line transect was made edge-to-interior with 1,600 m in distance from CBG boundary. Result showed that distance from CBG was not significant in correlation with non-native tree and treelet density. Furthermore, presence of existing CBG’s plant collection was not a single aspect which influenced presence and abundance. Three invasive species possibly was escape from CBG and it showed edge-to-interior in stems density, i.e. Cinchona pubescens, Calliandra calothyrsus and Cestrum aurantiacum. The patterns of non-native species were influenced by presence of ditch across transect, existence of human trail, and the other non-native species did not have general pattern of spread distribution. Overall, botanical gardens should minimize the risk of unintentional introduced plant by perform site-specific risk assessment.

  16. Antibacterial activity of extracts of three Croton species collected in Mpumalanga region in South Africa.

    Science.gov (United States)

    Selowa, S C; Shai, L J; Masoko, P; Mokgotho, M P; Magano, S R

    2009-12-30

    The antibacterial activities of three Croton species were compared using bioautography and the serial microdilution methods. The methanolic extracts of all the species had low activity against Escherichia coli. The highest activity was observed with Croton megalobotrys against Enterococcus faecalis with a minimal inhibitory concentration (MIC) value of 0.02 mg/ml. Croton steenkapianus extracts were the least active of the species investigated, only managing an MIC value of 0.625 mg/ml against Pseudomonas aeruginosa. Croton megalobotrys leaf powder was serially extracted using solvents of various polarities. The lowest MIC value (0.06 mg/ml) of the serially extracted fractions was observed with acetone against Pseudomonas aeruginosa. The liquid-liquid fractions of the methanol extract of Croton megalobotrys were also tested. The lowest MIC value of 0.02 mg/ml was observed with n-hexane fraction against Enterococcus faecalis. The carbon tetrachloride fraction was further fractionated using column chromatography with silica as the immobile phase. The resulting seven fractions were tested for activity following the bioassay-guided practice, and it emerged that the first three fractions had active compounds against Staphylococcus aureus when the bioautography method was used.

  17. Genetic Relationships of two Sonchus Species Collected from two Locations in Khartoum State Using RAPD Markers

    OpenAIRE

    H.H. Elkamali; M.S.M. El-Kheir, R.S. Habeballa, N.B. Hamaza, I.E. Abdalla, E.I. Ahmedani, A.A.S. Mohammed, B.A.A. Abuzaid, M.B. Mohammed and T.Y. Ahmed

    2011-01-01

    Random amplified polymorphic DNA markers were used to assess genetic diversity in Sonchus oleraceus and Sonchus cornatus (Asteraceae), vulnerable medicinal plants collected from two locations (Shambat and Omdurman) in Khartoum state. The DNA extracted by Cetyltrimethyl ammonim bromide method (CTAB) from the plant sample was amplified by successive PCR cycles. Using 15 random primers, the amplified DNA was subjected to agarose gel electrophoresis. 74 different bands were observed under UV ligh...

  18. Survey of Ticks Collected from Tennessee Cattle and Their Pastures for Anaplasma and Ehrlichia Species.

    Science.gov (United States)

    Pompo, K; Mays, S; Wesselman, C; Paulsen, D J; Fryxell, R T Trout

    2016-02-01

    Anaplasma marginale is the causative agent for bovine anaplasmosis (BA) and Ehrlichia ruminantium is the causative agent for heartwater, 2 devastating diseases of cattle. BA is common in the United States and frequently reported in western Tennessee cattle; however, cases of heartwater are not yet established in the continental United States. Because both pathogens are transmitted via the bites of infected ticks, the objective of this study was to survey cattle and pastures for ticks and for each pathogen. University of Tennessee AgResearch has 7 research and education centers (REC) located throughout the state at which they manage cattle. Ticks were collected from selected cattle (every fourth to sixth animal) and pastures (via dragging) associated with the herd from each REC during the summer of 2013. A total of 512 ticks were collected from cattle (n = 386) and pastures (n = 126) and were PCR-screened for Anaplasma and Ehrlichia using genus-specific primers. Collections consisted of 398 (77.7%) Amblyomma americanum, 84 (16.4%) Amblyomma maculatum, and 30 (5.9%) Dermacentor variabilis. Ticks were not recovered from pastures or cattle east of the Tennessee Plateau. The North American vectors for An. marginale and E. ruminantium were identified (D. variabilis and A. maculatum, respectively), but neither pathogen was recovered. A large proportion of ticks were collected from cattle and, of these, a majority were attached to their host (compared to questing on their host or engorged on the host). Four A. americanum were positive for Ehrlichia spp. (Ehrlichia ewingii, Ehrlichia chaffeensis, and Panola Mountain Ehrlichia), all in western Tennessee. With the identification of a few Ehrlichia infections in cattle-associated ticks and current A. marginale rates in Tennessee beef cattle nearing 11%, additional research is needed to establish baseline tick, Anaplasma, and Ehrlichia data for future management studies.

  19. Fusarium species isolated from Pennisetum clandestinum collected during outbreaks of kikuyu poisoning in cattle in South Africa.

    Science.gov (United States)

    Botha, Christo J; Truter, Mariëtte; Jacobs, Adriaana

    2014-11-20

    Kikuyu poisoning occurs sporadically in South Africa. It is of major economic importance, as valuable dairy cows are often poisoned by it, and once affected, the mortality rate is high. Pennisetum clandestinum samples were collected during eight outbreaks of kikuyu poisoning in cattle in the Eastern Cape Province of South Africa from 2008 to 2010. The kikuyu grass samples were submitted specifically for the isolation and molecular identification of Fusarium species, as it was recently suggested that mycotoxins synthesised by Fusarium torulosum could be the cause of this intoxication. Ninety-four Fusarium isolates were retrieved from the grass samples, of which 72 were members of the Fusarium incarnatum/Fusarium equiseti species complex based on morphology and phylogenetic analyses of the translation elongation factor 1α sequence data. The South African isolates from kikuyu identified as members of the F. incarnatum/F. equiseti species complex grouped together in six separate clades. The other isolates were Fusarium culmorum (n = 3), Fusarium redolens (n = 4) and Fusarium oxysporum (n = 15). Although F. torulosum could not be isolated from P. clandestinum collected during kikuyu poisoning outbreaks in South Africa, the mycotoxicosis theory is still highly plausible.

  20. Biomarker sensitivity for polynuclear aromatic hydrocarbon contamination in two marine fish species collected in Galveston Bay, Texas

    Energy Technology Data Exchange (ETDEWEB)

    Willett, K.L.; Steinberg, M.A.; Safe, S.H. [Texas A and M Univ., College Station, TX (United States). Veterinary Physiology and Pharmacology; McDonald, S.J.; Beatty, K.B.; Kennicutt, M.C. [Geochemical and Environmental Research Group, College Station, TX (United States)

    1997-07-01

    The Galveston Bay estuary exhibited a contamination gradient for polynuclear aromatic hydrocarbons (PAHs) and halogenated aromatic hydrocarbons, and the comparative sensitivity of various biomarkers in fish from different bay locations were determined. Two fish species, hardhead catfish (Arius felis) and Atlantic croaker (Micropogon undulatus), were collected from four stations where sediment total PAHs ranged from 68 > 1,000 ng/g. The induction of cytochrome P4501A-(CYP1A)-dependent hepatic ethoxyresorufin-O-deethylase (EROD) activity, CYPIA mRNA levels, or CYPIA immunoreactive protein in hardhead catfish was highly variable in the field-collected fish and in fish dosed with up to 15 mg/kg benzo[a]pyrene (BaP). In contrast, significant differences were seen in biliary concentrations of naphthalene, phenanthrene, and BaP metabolites in hardhead catfish from polluted versus less polluted areas. In croakers taken from the same four Galveston Bay locations, EROD and glutathione S-transferase activities, immunoreactive CYP1A protein, biliary PAH metabolites, and PAH-DNA adducts were higher at the contaminated stations compared with less polluted locations. These studies suggest that the croaker is a good species for monitoring contaminants that induce CYP1A-mediated responses. Biliary PAH metabolites and PAH-DNA adducts were also sensitive indicators of exposure to PAH contamination in both species of fish.

  1. Fusarium species isolated from Pennisetum clandestinum collected during outbreaks of kikuyu poisoning in cattle in South Africa

    Directory of Open Access Journals (Sweden)

    Christo J. Botha

    2014-02-01

    Full Text Available Kikuyu poisoning occurs sporadically in South Africa. It is of major economic importance, as valuable dairy cows are often poisoned by it, and once affected, the mortality rate is high. Pennisetum clandestinum samples were collected during eight outbreaks of kikuyu poisoning in cattle in the Eastern Cape Province of South Africa from 2008 to 2010. The kikuyu grass samples were submitted specifically for the isolation and molecular identification of Fusarium species, as it was recently suggested that mycotoxins synthesised by Fusarium torulosum could be the cause of this intoxication. Ninety-four Fusarium isolates were retrieved from the grass samples, of which 72 were members of the Fusarium incarnatum/Fusarium equiseti species complex based on morphology and phylogenetic analyses of the translation elongation factor 1α sequence data. The South African isolates from kikuyu identified as members of the F. incarnatum/F. equiseti species complex grouped together in six separate clades. The other isolates were Fusarium culmorum (n = 3, Fusarium redolens (n = 4 and Fusarium oxysporum (n = 15. Although F. torulosum could not be isolated from P. clandestinum collected during kikuyu poisoning outbreaks in South Africa, the mycotoxicosis theory is still highly plausible.

  2. Molecular identification and antifungal susceptibility profiles of Candida parapsilosis complex species isolated from culture collection of clinical samples

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    Fábio Silvestre Ataides

    2015-08-01

    Full Text Available AbstractINTRODUCTION:Candida parapsilosis is a common yeast species found in cases of onychomycosis and candidemia associated with infected intravascular devices. In this study, we differentiated Candida parapsilosis sensu stricto, Candida orthopsilosis , and Candida metapsilosis from a culture collection containing blood and subungual scraping samples. Furthermore, we assessed the in vitro antifungal susceptibility of these species to fluconazole, itraconazole, voriconazole, posaconazole, amphotericin B, and caspofungin.METHODS:Differentiation of C. parapsilosis complex species was performed by amplification of the secondary alcohol dehydrogenase (SADH gene and digestion by the restriction enzyme Ban I. All isolates were evaluated for the determination of minimal inhibitory concentrations using Etest, a method for antifungal susceptibility testing.RESULTS:Among the 87 isolates, 78 (89.7% were identified as C. parapsilosis sensu stricto , five (5.7% were identified as C. orthopsilosis , and four (4.6% were identified as C. metapsilosis . Analysis of antifungal susceptibility showed that C. parapsilosis sensu strictoisolates were less susceptible to amphotericin B and itraconazole. One C. parapsilosis sensu stricto isolate was resistant to amphotericin B and itraconazole. Moreover, 10.2% of C. parapsilosis sensu stricto isolates were resistant to caspofungin. Two C. parapsilosis sensu strictoisolates and one C. metapsilosis isolate were susceptible to fluconazole in a dose-dependent manner.CONCLUSIONS:We reported the first molecular identification of C. parapsilosiscomplex species in State of Goiás, Brazil. Additionally, we showed that although the three species exhibited differences in antifungal susceptibility profiles, the primary susceptibility of this species was to caspofungin.

  3. Occurrence of piperidine alkaloids in Piper species collected in different areas.

    Science.gov (United States)

    Bao, Narisu; Ochir, Sarangowa; Sun, Zhaorigetu; Borjihan, Gereltu; Yamagishi, Takashi

    2014-01-01

    A simple and convenient method was established for simultaneous quantitative determination of piperine and piperlonguminine in dried fruits of Piper longum and allied plants. The average content of piperine in P. longum (18.26 mg/g, range 12.05-33.23 mg/g) was about one half that of P. nigrum (40.09 mg/g, range 29.57-54.23 mg/g), but the content of piperlonguminine in P. longum was in the range of 0.42-1.82 mg/g, and the average content of piperlonguminne (0.91 mg/g) was about seven times higher than that in P. nigrum (0.13 mg/g). A sample of P. longum from Vietnam and a sample of P. retrofractum collected in Ishigaki, Japan, showed high contents of piperine and piperlonguminine. On the other hand, a sample of P. betle collected in Taiwan showed low content of piperine, and piperlonguminine was not detected.

  4. California dragonfly and damselfly (Odonata database: temporal and spatial distribution of species records collected over the past century

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    Joan E. Ball-Damerow

    2015-02-01

    Full Text Available The recently completed Odonata database for California consists of specimen records from the major entomology collections of the state, large Odonata collections outside of the state, previous literature, historical and recent field surveys, and from enthusiast group observations. The database includes 32,025 total records and 19,000 unique records for 106 species of dragonflies and damselflies, with records spanning 1879–2013. Records have been geographically referenced using the point-radius method to assign coordinates and an uncertainty radius to specimen locations. In addition to describing techniques used in data acquisition, georeferencing, and quality control, we present assessments of the temporal, spatial, and taxonomic distribution of records. We use this information to identify biases in the data, and to determine changes in species prevalence, latitudinal ranges, and elevation ranges when comparing records before 1976 and after 1979. The average latitude of where records occurred increased by 78 km over these time periods. While average elevation did not change significantly, the average minimum elevation across species declined by 108 m. Odonata distribution may be generally shifting northwards as temperature warms and to lower minimum elevations in response to increased summer water availability in low-elevation agricultural regions. The unexpected decline in elevation may also be partially the result of bias in recent collections towards centers of human population, which tend to occur at lower elevations. This study emphasizes the need to address temporal, spatial, and taxonomic biases in museum and observational records in order to produce reliable conclusions from such data.

  5. The ex situ conservation strategy for endangered plant species: small samples, storage and lessons from seed collected from US national parks

    Science.gov (United States)

    Ex situ collections of seeds sampled from wild populations provide germplasm for restoration and for scientific study about biological diversity. Seed collections of endangered species are urgent because they might forestall ever-dwindling population size and genetic diversity. However, collecting ...

  6. Influence of pH and inorganic phosphate on toxicity of zinc to Arthrobacter sp. isolated from heavy-metal-contaminated sediments.

    Science.gov (United States)

    Moberly, James G; Staven, Ari; Sani, Rajesh K; Peyton, Brent M

    2010-10-01

    Because of its high solubility over a wide range of pH conditions, zinc is found in many natural and human-impacted systems. Zinc speciation is critical in assessing zinc toxicity to microorganisms because it varies considerably with pH and is dependent on other aqueous constituents. Combined results of thermodynamic modeling, statistical analysis, and batch culture studies using Arthrobacter sp. JM018 suggest that the toxic species may not be solely limited to the free ion, but also includes ZnHPO(4)(0)(aq). Cellular uptake of ZnHPO(4)(0)(aq) through the inorganic phosphate transporter (Pit family), which requires a neutral metal phosphate complex for phosphate transport, may explain the observed toxicity. Based on visual MINTEQ (v3.0) modeling, at 50 μM total zinc, ZnHPO(4)(0)(aq) constitutes 33, 70, and 76% of the neutral metal phosphate pool at pH 6, 7, and 8, respectively. At 50 μM total zinc, cultures supplied with organic phosphate (glycerol-3-phosphate) show no significant response to pH (p = 0.13) while inhibition of inorganic phosphate-supplemented cultures, whose neutral metal phosphates are increasingly dominated by ZnHPO(4)(0)(aq), show significant pH dependence (p = 9.45 × 10(-7)). Using sodium to decrease the distribution of ZnHPO(4)(0)(aq) in the neutral metal phosphate pool also decreased the pH dependent toxicity, further supporting this mechanism. These findings show the important role of minor zinc species in organism toxicity and have wider implications because the Pit inorganic phosphate transport system is widely distributed in Bacteria, Archaea, and Eukarya.

  7. Genetic uniformity of Echinococcus multilocularis collected from different intermediate host species in Hokkaido, Japan.

    Science.gov (United States)

    Okamoto, Munehiro; Oku, Yuzaburo; Kurosawa, Tsutomu; Kamiya, Masao

    2007-02-01

    DNA from several isolates of Taenia taeniaeformis and Echinococcus multilocularis were digested with restriction enzymes and hybridized with digoxigenated oligonucleotide probe (CAC)5. Within the six wild isolates of Taenia taeniaeformis from Norway rats in Hokkaido, although several bands were common among isolates, fingerprinting patterns were specific to each isolate. In the case of E. multilocularis, regardless of hosts from which each isolate has been isolated, the five isolates collected from Hokkaido, showed the same fingerprinting pattern. These results indicate that there was very little genetic difference among these isolates. Although the fingerprinting pattern of E. multilocularis from St. Lawrence Is. was similar to that of the Hokkaido isolates, some bands were different from those in the Hokkaido isolates. Echinococcus multilocularis in Hokkaido seems to be closely-related genetically to that from St. Lawrence Is.

  8. Degradation of o-methoxybenzoate by a two-member consortium made up of a gram-positive Arthrobacter strain and a gram-negative Pantotea strain.

    Science.gov (United States)

    Gil, M; Haïdour, A; Ramos, J L

    2000-01-01

    Aromatic carboxylic acids substituted with methoxylated groups are among the most abundant products in "alpechin", the wastes resulting from pressing olives to obtain olive oil. Degradation of o-methoxybenzoate by an stable consortium made of a gram positive bacterium, Arthrobacter oxydans, and gram negative one, Pantotea agglomerans, was shown to mineralize this compound efficiently. The concerted action of both microorganisms was needed for the two first steps in the process, namely, the conversion of o-methoxybenzoate into salycilate, and the hydroxylation of the latter to gentisate. Gentisate was further degraded by the Arthrobacter strain.

  9. LAMP-PCR detection of ochratoxigenic Aspergillus species collected from peanut kernel.

    Science.gov (United States)

    Al-Sheikh, H M

    2015-01-30

    Over the last decade, ochratoxin A (OTA) has been widely described and is ubiquitous in several agricultural products. Ochratoxins represent the second-most important mycotoxin group after aflatoxins. A total of 34 samples were surveyed from 3 locations, including Mecca, Madina, and Riyadh, Saudi Arabia, during 2012. Fungal contamination frequency was determined for surface-sterilized peanut seeds, which were seeded onto malt extract agar media. Aspergillus niger (35%), Aspergillus ochraceus (30%), and Aspergillus carbonarius (25%) were the most frequently observed Aspergillius species, while Aspergillus flavus and Aspergillus phoenicis isolates were only infrequently recovered and in small numbers (10%). OTA production was evaluated on yeast extract sucrose medium, which revealed that 57% of the isolates were A. niger and 60% of A. carbonarius isolates were OTA producers; 100% belonged to A. ochraceus. Only one isolate, morphologically identified as A. carbonarius, and 3 A. niger isolates unstably produced OTA. A polymerase chain reaction (PCR)-based identification and detection assay was used to identify A. ochraceus isolates. Using the primer sets OCRA1/OCRA2, 400-base pair PCR fragments were produced only when genomic DNA from A. ochraceus isolates was used. Recently, the loop-mediated isothermal amplification assay using recombinase polymerase amplification chemistry was used for A. carbonarius and A. niger DNA identification. As a non-gel-based technique, the amplification product was directly visualized in the reaction tube after adding calcein for naked-eye examination.

  10. Are both sympatric species Ilex perado and Ilex canariensis secretly hybridizing? Indication from nuclear markers collected in Tenerife

    Directory of Open Access Journals (Sweden)

    Manen Jean-François

    2004-11-01

    Full Text Available Abstract Background Intra-specific and intra-individual polymorphism is frequently observed in nuclear markers of Ilex (Aquifoliaceae and discrepancy between plastid and nuclear phylogenies is the rule in this genus. These observations suggest that inter-specific plastid or/and nuclear introgression played an important role in the process of evolution of Ilex. With the aim of a precise understanding of the evolution of this genus, two distantly related sympatric species collected in Tenerife (Canary Islands, I. perado and I. canariensis, were studied in detail. Introgression between these two species was previously never reported. One plastid marker (the atpB-rbcL spacer and two nuclear markers, the ribosomal internal transcribed spacer (ITS and the nuclear encoded plastid glutamine synthetase (nepGS were analyzed for 13 and 27 individuals of I. perado and I. canariensis, respectively. Results The plastid marker is intra-specifically constant and correlated with species identity. On the other hand, whereas the nuclear markers are conserved in I. perado, they are highly polymorphic in I. canariensis. The presence of pseudogenes and recombination in ITS sequences of I. canariensis explain this polymorphism. Ancestral sequence polymorphism with incomplete lineage sorting, or past or recent hybridization with an unknown species could explain this polymorphism, not resolved by concerted evolution. However, as already reported for many other plants, past or recent introgression of an alien genotype seem the most probable explanation for such a tremendous polymorphism. Conclusions Data do not allow the determination with certitude of the putative species introgressing I. canariensis, but I. perado is suspected. The introgression would be unilateral, with I. perado as the male donor, and the paternal sequences would be rapidly converted in highly divergent and consequently unidentifiable pseudogenes. At least, this study allows the establishment of

  11. A melting pot of Old World begomoviruses and their satellites infecting a collection of Gossypium species in Pakistan.

    Science.gov (United States)

    Nawaz-ul-Rehman, Muhammad Shah; Briddon, Rob W; Fauquet, Claude M

    2012-01-01

    CLCuD in southern Asia is caused by a complex of multiple begomoviruses (whitefly transmitted, single-stranded [ss]DNA viruses) in association with a specific ssDNA satellite; Cotton leaf curl Multan betasatellite (CLCuMuB). A further single ssDNA molecule, for which the collective name alphasatellites has been proposed, is also frequently associated with begomovirus-betasatellite complexes. Multan is in the center of the cotton growing area of Pakistan and has seen some of the worst problems caused by CLCuD. An exhaustive analysis of the diversity of begomoviruses and their satellites occurring in 15 Gossypium species (including G. hirsutum, the mainstay of Pakistan's cotton production) that are maintained in an orchard in the vicinity of Multan has been conducted using φ29 DNA polymerase-mediated rolling-circle amplification, cloning and sequence analysis. The non-cultivated Gossypium species, including non-symptomatic plants, were found to harbor a much greater diversity of begomoviruses and satellites than found in the cultivated G. hirsutum. Furthermore an African cassava mosaic virus (a virus previously only identified in Africa) DNA-A component and a Jatropha curcas mosaic virus (a virus occurring only in southern India) DNA-B component were identified. Consistent with earlier studies of cotton in southern Asia, only a single species of betasatellite, CLCuMuB, was identified. The diversity of alphasatellites was much greater, with many previously unknown species, in the non-cultivated cotton species than in G. hirsutum. Inoculation of newly identified components showed them to be competent for symptomatic infection of Nicotiana benthamiana plants. The significance of the findings with respect to our understanding of the role of host selection in virus diversity in crops and the geographical spread of viruses by human activity are discussed.

  12. A melting pot of Old World begomoviruses and their satellites infecting a collection of Gossypium species in Pakistan.

    Directory of Open Access Journals (Sweden)

    Muhammad Shah Nawaz-ul-Rehman

    Full Text Available CLCuD in southern Asia is caused by a complex of multiple begomoviruses (whitefly transmitted, single-stranded [ss]DNA viruses in association with a specific ssDNA satellite; Cotton leaf curl Multan betasatellite (CLCuMuB. A further single ssDNA molecule, for which the collective name alphasatellites has been proposed, is also frequently associated with begomovirus-betasatellite complexes. Multan is in the center of the cotton growing area of Pakistan and has seen some of the worst problems caused by CLCuD. An exhaustive analysis of the diversity of begomoviruses and their satellites occurring in 15 Gossypium species (including G. hirsutum, the mainstay of Pakistan's cotton production that are maintained in an orchard in the vicinity of Multan has been conducted using φ29 DNA polymerase-mediated rolling-circle amplification, cloning and sequence analysis. The non-cultivated Gossypium species, including non-symptomatic plants, were found to harbor a much greater diversity of begomoviruses and satellites than found in the cultivated G. hirsutum. Furthermore an African cassava mosaic virus (a virus previously only identified in Africa DNA-A component and a Jatropha curcas mosaic virus (a virus occurring only in southern India DNA-B component were identified. Consistent with earlier studies of cotton in southern Asia, only a single species of betasatellite, CLCuMuB, was identified. The diversity of alphasatellites was much greater, with many previously unknown species, in the non-cultivated cotton species than in G. hirsutum. Inoculation of newly identified components showed them to be competent for symptomatic infection of Nicotiana benthamiana plants. The significance of the findings with respect to our understanding of the role of host selection in virus diversity in crops and the geographical spread of viruses by human activity are discussed.

  13. Soluble species in aerosols collected on the route of the Second Chinese National Arctic Research Expedition

    Institute of Scientific and Technical Information of China (English)

    Xu Jianzhong; Sun Junying; Ren Jiawen; Qin Dahe

    2005-01-01

    Aerosol samples are collected on the route of the Second Chinese National Arctic Research Expedition from July 15 to September 28, 2003. The concentration of water soluble ions (Na+, NH4+, Ca2+, CI-, MSA , SO42- and so on) are analyzed. By correlation analysis, the ions can be divided into three groups: ( 1 ) Na + ,Mg2+ , K + , Ca2 + , Cl- , SO42 - , mainly from sea salt; (2) NH4+ , NO3- , markedly from coastal regions of the continents ; (3) Acetate, MSA, C2042-, from other sources. Marine aerosols are the dominant origin, Cl- and Na + are the most dominant anion and cation, respectively and these two ions ( Na + + Cl - ) account for 55.6% of the total aerosol loading. The mean equivalence ratio of NH4+/SO42 - is 0.45,we suggest that ammonium and sulfate exist mainly as NH4HSO4. The concentration of NO3- shows three different patterns on the route of expedition: Japan Sea with meparison of the concentration of main water soluble ions between the First and Second Chinese National Arctic Research Expedition, the variation matches each other.

  14. Real-time PCR-based identification of Borrelia burgdorferi sensu lato species in ticks collected from humans in Romania.

    Science.gov (United States)

    Briciu, Violeta T; Meyer, Fabian; Sebah, Daniela; Tăţulescu, Doina F; Coroiu, Georgiana; Lupşe, Mihaela; Carstina, Dumitru; Mihalca, Andrei D; Hizo-Teufel, Cecilia; Klier, Christiane; Huber, Ingrid; Fingerle, Volker

    2014-09-01

    The aims of our study were to determine (i) which tick species bite humans in Romania and (ii) the prevalence of Borrelia (B.) burgdorferi genospecies in these ticks. All ticks collected from patients who presented to the Clinic of Infectious Diseases Cluj Napoca in spring/summer 2010 were morphologically identified by an entomologist and tested for B. burgdorferi genospecies prevalence by a real-time PCR assay targeting the hbb gene and melting curve analysis. Out of 532 ticks, 518 were Ixodes ricinus, 10 Dermacentor marginatus, and 3 Haemaphysalis spp. ticks, and one unidentified tick due to destruction. Since evaluation of the hbb PCR revealed that it was not possible to differentiate between B. spielmanii/B. valaisiana and B. garinii/B. bavariensis, sequencing of an 800-bp fragment of the ospA gene was performed in these cases. Out of 389 investigated ticks, 43 were positive by hbb PCR for B. burgdorferi sensu lato. The positive samples were 42 Ixodes ricinus (11.1% B. burgdorferi sensu lato prevalence) and the one unidentified tick. Species identification revealed the presence of mainly B. afzelii, but also of B. garinii, B. burgdorferi sensu stricto, B. valaisiana, and B. lusitaniae. In 4 samples, differentiation between B. spielmanii/B. valaisiana was impossible. Our study shows that the most relevant human pathogenic B. burgdorferi genospecies - predominantly B. afzelii - are present in ticks collected from Romanian patients.

  15. Survey of total mercury in some edible fish and shellfish species collected in Canada in 2002.

    Science.gov (United States)

    Dabeka, R; McKenzie, A D; Forsyth, D S; Conacher, H B S

    2004-05-01

    Total mercury was measured in the edible portions of 244 selected fish and shellfish purchased in Canada at the retail level. By species, average mercury concentrations ranged from 0.011 microg g(-1) for oysters to 1.82 microg g(-1) for swordfish. The predatory fish contained the highest concentrations of mercury: swordfish (mean 1.82 microg g(-1), range 0.40-3.85 microg g(-1)), marlin (1.43, 0.34-3.19 microg g(-1)), shark (1.26, 0.087-2.73 microg g(-1)), and canned, fresh and frozen tuna (0.35, 0.020-2.12 microg g(-1)). Levels of mercury in the fresh and frozen tuna contained a mean of 0.93 microg g(-1) (range 0.077-2.12 microg g(-1)) and were substantially higher than in the canned tuna (0.15, 0.02-0.59 microg g(-1)). In the canned tuna, mercury concentrations varied with subspecies, with the highest average concentrations being found in Albacore tuna (mean 0.26 microg g(-1), range 0.19-0.38 microg g(-1)) and the lowest (0.047, 0.025-0.069 microg g(-1)) in five samples for which the subspecies of tuna were not identified. Mean concentrations of mercury in swordfish and fresh and frozen tuna were up to three times higher than reported for the USA. Dietary intake estimations found that provided fresh and frozen tuna, marlin, swordfish or shark are consumed once a month or less, the dietary intakes of total mercury by women of child-bearing age, averaged over 1 month, would fall below the Joint FAO/WHO Expert Committee on Food Additives provisional tolerable weekly intake for total mercury. The current Canadian advisory to children and women of child-bearing age is to limit their consumption of fresh and frozen tuna, swordfish and shark to no more than one meal per month.

  16. Alternating Current-Dielectrophoresis Collection and Chaining of Phytoplankton on Chip: Comparison of Individual Species and Artificial Communities

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    Coralie Siebman

    2017-01-01

    Full Text Available The capability of alternating current (AC dielectrophoresis (DEP for on-chip capture and chaining of the three species representative of freshwater phytoplankton was evaluated. The effects of the AC field intensity, frequency and duration on the chaining efficiency and chain lengths of green alga Chlamydomonas reinhardtii, cyanobacterium Synechocystis sp. and diatom Cyclotella meneghiniana were characterized systematically. C. reinhardtii showed an increase of the chaining efficiency from 100 Hz to 500 kHz at all field intensities; C. meneghiniana presented a decrease of chaining efficiency from 100 Hz to 1 kHz followed by a significant increase from 1 kHz to 500 kHz, while Synechocystis sp. exhibited low chaining tendency at all frequencies and all field intensities. The experimentally-determined DEP response and cell alignment of each microorganism were in agreement with their effective polarizability. Mixtures of cells in equal proportion or 10-times excess of Synechocystis sp. showed important differences in terms of chaining efficiency and length of the chains compared with the results obtained when the cells were alone in suspension. While a constant degree of chaining was observed with the mixture of C. reinhardtii and C. meneghiniana, the presence of Synechocystis sp. in each mixture suppressed the formation of chains for the two other phytoplankton species. All of these results prove the potential of DEP to discriminate different phytoplankton species depending on their effective polarizability and to enable their manipulation, such as specific collection or separation in freshwater.

  17. Characterization of a novel phenol hydroxylase in indoles biotransformation from a strain Arthrobacter sp. W1 [corrected].

    Directory of Open Access Journals (Sweden)

    Yuanyuan Qu

    Full Text Available BACKGROUND: Indigoids, as popular dyes, can be produced by microbial strains or enzymes catalysis. However, the new valuable products with their transformation mechanisms, especially inter-conversion among the intermediates and products have not been clearly identified yet. Therefore, it is necessary to investigate novel microbial catalytic processes for indigoids production systematically. FINDINGS: A phenol hydroxylase gene cluster (4,606 bp from Arthrobacter sp. W1 (PH(w1 was obtained. This cluster contains six components in the order of KLMNOP, which exhibit relatively low sequence identities (37-72% with known genes. It was suggested that indole and all the tested indole derivatives except for 3-methylindole were transformed to various substituted indigoid pigments, and the predominant color products derived from indoles were identified by spectrum analysis. One new purple product from indole, 2-(7-oxo-1H-indol-6(7H-ylidene indolin-3-one, should be proposed as the dimerization of isatin and 7-hydroxylindole at the C-2 and C-6 positions. Tunnel entrance and docking studies were used to predict the important amino acids for indoles biotransformation, which were further proved by site-directed mutagenesis. CONCLUSIONS/SIGNIFICANCE: We showed that the phenol hydroxylase from genus Arthrobacter could transform indoles to indigoids with new chemical compounds being produced. Our work should show high insights into understanding the mechanism of indigoids bio-production.

  18. Biofiltration of trimethylamine, dimethylamine, and methylamine by immobilized Paracoccus sp. CP2 and Arthrobacter sp. CP1.

    Science.gov (United States)

    Ho, Kuo-Ling; Chung, Ying-Chien; Lin, Yueh-Hsien; Tseng, Ching-Ping

    2008-05-01

    A biofilter using granular activated carbon with immobilized Paracoccus sp. CP2 was applied to the elimination of 10-250 ppm of trimethylamine (TMA), dimethylamine (DMA), and methylamine (MA). The results indicated that the system effectively treated MA (>93%), DMA (>90%), and TMA (>85%) under high loading conditions, and the maximum degradation rates were 1.4, 1.2, and 0.9g-Nkg(-1) GAC d(-1). Among the three different amines treated, TMA was the most difficult to degrade and resulted in ammonia accumulation. Further study on TMA removal showed that the optimal pH was near neutral (6.0-8.0). The supply of high glucose (>0.1%) inhibited TMA removal, maybe due to substrate competition. However, complete TMA degradation was achieved under the co-immobilization of Paracoccus sp. CP2 and Arthrobacter sp. CP1 ( approximately 96%). Metabolite analysis results demonstrated that the metabolite NH(4)(+) concentrations decreased by a relatively small 27% while the metabolite NO(2)(-) apparently increased by heterotrophic nitrification of Arthrobacter sp. CP1 in the co-immobilization biofilter.

  19. Optimization of Endoglucanase Production from a Novel Bacterial Isolate, Arthrobacter sp. HPG166 and Characterization of Its Properties

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    Shengwei Huang

    2015-10-01

    Full Text Available ABSTRACTIn this study, a potential novel cellulolytic bacteriumArthrobacter sp. HPG166 was isolated from the hindgut of root-feeding larvaeHolotrichia parallela. Optimization of fermentation factors for endoglucanase production byArthrobacter sp. HPG166 was carried out via response surface methodology. Sodium carboxymethylcellulose 1.19% (w/v and beef extract 0.35% (w/v were the ideal combination of carbon and nitrogen sources for enzyme production; the optimum temperature and pH for cellulase production were 34°C and pH 8.0 respectively. Under the optimized fermentation conditions, the maximum endoglucanase activity of 1.411 U mL-1 was obtained. The crude endoglucanase was thermotolerant as it retained 50.31% of its activity after incubation at 70°C for an hour. Metal profile of the enzyme indicated that Mg2+ and Na+ were strong stimulators while Mn2+ and Co+ drastically inhibited its activity. Due to its particular characteristics, this enzyme could have potential for industrial applications.

  20. Optimization of four types of antimicrobial agents to increase the inhibitory ability of marine Arthrobacter oxydans KQ11 dextranase mouthwash

    Science.gov (United States)

    Ren, Wei; Wang, Shujun; Lü, Mingsheng; Wang, Xiaobei; Fang, Yaowei; Jiao, Yuliang; Hu, Jianen

    2016-03-01

    We adopted the response surface methodology using single factor and orthogonal experiments to optimize four types of antimicrobial agents that could inhibit biofilm formation by Streptococcus mutans, which is commonly found in the human oral cavity and causes tooth decay. The objective was to improve the function of marine Arthrobacter oxydans KQ11 dextranase mouthwash (designed and developed by our laboratory). The experiment was conducted in a three-level, four-variable central composite design to determine the best combination of ZnSO4, lysozyme, citric acid and chitosan. The optimized antibacterial agents were 2.16 g/L ZnSO4, 14 g/L lysozyme, 4.5 g/L citric acid and 5 g/L chitosan. The biofilm formation inhibition reached 84.49%. In addition, microscopic observation of the biofilm was performed using scanning electron microscopy and confocal laser scanning microscopy. The optimized formula was tested in marine dextranase Arthrobacter oxydans KQ11 mouthwash and enhanced the inhibition of S. mutans. This work may be promoted for the design and development of future marine dextranase oral care products.

  1. Multilocus sequence typing of a global collection of Pasteurella multocida isolates from cattle and other host species demonstrates niche association

    Directory of Open Access Journals (Sweden)

    Lainson F Alex

    2011-05-01

    Full Text Available Abstract Background Pasteurella multocida causes disease in many host species throughout the world. In bovids, it contributes to bovine respiratory disease (BRD and causes haemorrhagic septicaemia (HS. Previous studies have suggested that BRD-associated P. multocida isolates are of limited diversity. A multilocus sequence typing (MLST scheme for P. multocida was used to determine whether the low levels of diversity reported are due to the limited discriminatory power of the typing method used, restricted sample selection or true niche association. Bovine respiratory isolates of P. multocida (n = 133 from the UK, the USA and France, collected between 1984 and 2008 from both healthy and clinically affected animals, were typed using MLST. Isolates of P. multocida from cases of HS, isolates from other host species and data from the MLST database were used as comparison. Results Bovine respiratory isolates were found to be clonal (ISA 0.45 with 105/128 belonging to clonal complex 13 (CC13. HS isolates were not related to bovine respiratory isolates. Of the host species studied, the majority had their own unique sequence types (STs, with few STs being shared across host species, although there was some cross over between porcine and bovine respiratory isolates. Avian, ovine and porcine isolates showed greater levels of diversity compared to cattle respiratory isolates, despite more limited geographic origins. Conclusions The homogeneity of STs of bovine respiratory P. multocida observed, and the differences between these and P. multocida subpopulations from bovine non-respiratory isolates and non-bovine hosts may indicate niche association.

  2. Deep-sea shrimps of the genus Bythocaris G.O. Sars in the collections of Russian museums, with the description of a new species (Crustacea: Decapoda: Hippolytidae)

    NARCIS (Netherlands)

    Sokolov, V.

    2000-01-01

    The collections of Bythocaris in Russian museums and research institutes were studied. Three species, B. biruli Kobjakova, 1964, B. curvirostris Kobjakova, 1957 and B. irene Retovsky, 1946, are redescribed, and a new species, B. kobjakovae spec. nov. is described. The intra-specific variation of six

  3. Low occurrence of the new species Staphylococcus argenteus in a Staphylococcus aureus collection of human isolates from Belgium.

    Science.gov (United States)

    Argudín, M A; Dodémont, M; Vandendriessche, S; Rottiers, S; Tribes, C; Roisin, S; de Mendonça, R; Nonhoff, C; Deplano, A; Denis, O

    2016-06-01

    Staphylococcus argenteus is a novel Staphylococcus species closely related to Staphylococcus aureus that has been recently described. In this study, we investigated the proportion and the characteristics of S. argenteus recovered from humans in Belgium. S. aureus. human isolates collected in Belgium from 2006 to 2015 (n = 1,903) were retrospectively characterised via the presence of non-pigmented colonies on chocolate agar, spa typing and rpoB sequencing to determine if some of them were in fact S. argenteus. Out of 73 strains non-pigmented on chocolate plates, 3 isolates (0.16 %) showed rpoB sequences, in addition to spa and sequence types (ST2250/t5787, ST2250/t6675, ST3240/t6675), related to S. argenteus. Two of them were methicillin-resistant, harbouring a SCCmec type IV. The three S. argenteus isolates carried genes (sak, scn) of the immune evasion cluster. This first Belgian nationwide analysis showed a low occurrence of S. argenteus. Further studies should be conducted to identify the distribution range and the clinical impact of this new species.

  4. Distribution of vibrio species in shellfish and water samples collected from the atlantic coastline of south-east Nigeria.

    Science.gov (United States)

    Eyisi, Onyedikachukwu A L; Nwodo, Uchechukwu U; Iroegbu, Christian U

    2013-09-01

    Crayfish, lobster, and sea-water samples collected from five fishing islands on the Atlantic coast-Bight of Biafra (Bonny)-belonging to Ibaka Local Government Area of Akwa-Ibom State of Nigeria were bacteriologically evaluated on thiosulphate citrate bile-salt sucrose (TCBS) agar for Vibrio load and pathotypes. Mean log10 Vibrio counts of 7.64+/-2.78 cfu/g (in crayfish), 5.07+/-3.21 cfu/g (in lobster), and 3.06+/-2.27 cfu/mL (in sea-water) were obtained in rainy season (June-July) while counts in the dry season (November-December) were 6.25+/-1.93 cfu/g, 5.99+/-1.54 cfu/g, and 3.84+/-1.78 cfu/mL respectively. The physicochemical measurements (temperature, pH, and total dissolved solutes) of the sea-water did not vary significantly in the two seasons across all five islands. Vibrio species isolated were Vibrio cholerae (both O1 and non-O1 serotypes), V parahaemolyticus, V vulnificus, V mimicus, and V fluvialis. Both Ogawa and Inaba subtypes of V cholerae O1 serotype were found. In addition, the Hikojima subtype, which had not been previously reported in the region, was isolated in two samples. The results show that these Vibrio species are endemic in the area.

  5. New records and detailed distribution and abundance of selected arthropod species collected between 1999 and 2011 in Azorean native forests

    Science.gov (United States)

    Gaspar, Clara; Crespo, Luís Carlos Fonseca; Rigal, François; Cardoso, Pedro; Pereira, Fernando; Rego, Carla; Amorim, Isabel R.; Melo, Catarina; Aguiar, Carlos; André, Genage; Mendonça, Enésima P.; Ribeiro, Sérvio; Hortal, Joaquín; Santos, Ana M.C.; Barcelos, Luís; Enghoff, Henrik; Mahnert, Volker; Pita, Margarida T.; Ribes, Jordi; Baz, Arturo; Sousa, António B.; Vieira, Virgílio; Wunderlich, Jörg; Parmakelis, Aristeidis; Whittaker, Robert J.; Quartau, José Alberto; Serrano, Artur R.M.; Triantis, Kostas A.

    2016-01-01

    Abstract Background In this contribution we present detailed distribution and abundance data for arthropod species identified during the BALA – Biodiversity of Arthropods from the Laurisilva of the Azores (1999-2004) and BALA2 projects (2010-2011) from 18 native forest fragments in seven of the nine Azorean islands (all excluding Graciosa and Corvo islands, which have no native forest left). New information Of the total 286 species identified, 81% were captured between 1999 and 2000, a period during which only 39% of all the samples were collected. On average, arthropod richness for each island increased by 10% during the time frame of these projects. The classes Arachnida, Chilopoda and Diplopoda represent the most remarkable cases of new island records, with more than 30% of the records being novelties. This study stresses the need to expand the approaches applied in these projects to other habitats in the Azores, and more importantly to other less surveyed taxonomic groups (e.g. Diptera and Hymenoptera). These steps are fundamental for getting a more accurate assessment of biodiversity in the archipelago. PMID:28174509

  6. On a collection of Peruvian Neniinae (Mollusca: Gastropoda: Clausiliidae), with a check-list and a provisional key to all the Peruvian species known

    NARCIS (Netherlands)

    Loosjes, F.E.; Loosjes-van Bemmel, A.C.W.

    1984-01-01

    An annotated list is given of all Neniinae collected in 1975 by Dr. A. S. H. Breure in Peru. The localities that have been visited are also listed, together with the Neniinae collected there. Pseudogracilinenia gen. nov. is described for P. huallagana (Pilsbry, 1949) (type-species) and P.jolyi (O. B

  7. A new iranian species of Uroleucon Mordvilko, 1914 (Hemiptera, Aphididae from specimens in the Natural History Museum collection

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    Nieto Nafría, Juan M.

    2014-06-01

    Full Text Available Uroleucon (Uromelan helichrysi sp. n. (Hemiptera, Aphididae, Aphidinae: Macrosiphini is established from Iranian apterous and alate viviparous females caught on Helichrysum sp. (Asteraceae and preserved in the collection of the Natural History Museum (BMNH in London. The number of setae on the first tarsal segments (5, the number of caudal setae (20 to 28, the presence of abdominal marginal tubercles on abdominal segments 2 to 4, and the size of the cells of the siphuncular reticulation (relatively small allow the new species to be distinguished from other Palaeartic species of the subgenus Uromelan. Blackman and Eastop’s key to apterae on Helichrysum is modified to include the new species. urn:lsid:zoobank.org:pub:E2B89D59-05FD-4A9E-AD78-B3C302219A10Se establece la especie Uroleucon helichrysi n. sp. (Hemiptera: Aphididae: Aphidinae: Macrosiphini con la descripción de sus hembras vivíparas ápteras y aladas recogidas en Irán sobre Helichrysum sp. (Asteraceae, conservadas en la colección del Natural History Museum de Londres. La nueva especie se diferencia de otras especies paleárticas del subgénero Uromelan por la cantidad de setas en el primer segmento tarsal (5, la cantidad de setas caudales (20 a 28, por el tamaño de las celdillas de la reticulación cornicular (que son relativamente pequeñas y por la presencia de papilas marginales (presentes en los segmentos abdominales 2 a 4 Se incluye una modificación a la clave de Blackman and Eastop para las ápteras que viven sobre Helichrysum. urn:lsid:zoobank.org:pub:E2B89D59-05FD-4A9E-AD78-B3C302219A10

  8. Physicochemical factors for affecting the efficiency of Arthrobacter chlorophenolicus MN1409 on manganese oxidation%理化因素对锰细菌Arthrobacter chlorophenolicus MN1409氧化Mn2+的影响

    Institute of Scientific and Technical Information of China (English)

    冯福鑫; 王芳; 许旭萍

    2012-01-01

    Arthrobacter chlorophenolicus MN1409是1株分离自锰矿样品的高效锰氧化细菌.为了建立该菌株氧化Mn2+的适宜条件,研究了接种量、装液量、摇床转速、温度、pH值、Fe2+初始质量浓度和Mn2+初始质量浓度等理化因素对其锰氧化效率的影响.结果表明,接种量、装液量、转速和Mn2+初始质量浓度在一定范围内变化对锰氧化率影响不大;而温度、pH值和Fe2+初始质量浓度变化对锰氧化率有较大影响.当接种量为4%,装液量为60mL,温度为25℃,摇床转速为100r/min,pH值为7,且有一定的Fe2+存在时,Arthrobacter chlorophenolicus MN1409对锰的氧化效率最高.%The physicochemical factors for affecting the manganese oxidation efficiency of an manganese oxidizing bacteria named Arthrobacter chlorophennlicus MN1409 which was isolated from manganese ore sample were studied. The identified factors include inoculum volume, liquid volume, temperature, shaking speed, pH as well as the concentration of Fe2+ and Mn2+ . The results showed that there was no significant effect on the biological manganese oxidation rate and chemical manganese oxidation rate during 2% - 10% inoculum volumes. 4% inoculum volume was the optimum condition according to its highest total manganese oxidation rate. Similarly, biological and chemical manganese oxidation rale have no significant difference for the liquid volume ranging from 50 mL to 100 mL in 250 mL triangular flask , the highest total manganese oxidation rate occurred in 60 mL liquid volume. Nevertheless, temperature showed an positive effect on manganese oxidation rate. By increasing the temperature from 15 ℃ to 35 ℃, highest biological and chemical manganese oxidation rate could be reached at 25 ℃ and 35 ℃ , respectively, plus the total oxidation rate could achieved 81.52% as well in 35 ℃ . In addition, the effect of shaker speed on manganese oxidation efficiency (MOE) showed that the oxidation rates were similar for

  9. Life history correlates of fecal bacterial species richness in a wild population of the blue tit Cyanistes caeruleus.

    Science.gov (United States)

    Benskin, Clare McW H; Rhodes, Glenn; Pickup, Roger W; Mainwaring, Mark C; Wilson, Kenneth; Hartley, Ian R

    2015-02-01

    Very little is known about the normal gastrointestinal flora of wild birds, or how it might affect or reflect the host's life-history traits. The aim of this study was to survey the species richness of bacteria in the feces of a wild population of blue tits Cyanistes caeruleus and to explore the relationships between bacterial species richness and various life-history traits, such as age, sex, and reproductive success. Using PCR-TGGE, 55 operational taxonomic units (OTUs) were identified in blue tit feces. DNA sequencing revealed that the 16S rRNA gene was amplified from a diverse range of bacteria, including those that shared closest homology with Bacillus licheniformis, Campylobacter lari, Pseudomonas spp., and Salmonella spp. For adults, there was a significant negative relationship between bacterial species richness and the likelihood of being detected alive the following breeding season; bacterial richness was consistent across years but declined through the breeding season; and breeding pairs had significantly more similar bacterial richness than expected by chance alone. Reduced adult survival was correlated with the presence of an OTU most closely resembling C. lari; enhanced adult survival was associated with an OTU most similar to Arthrobacter spp. For nestlings, there was no significant change in bacterial species richness between the first and second week after hatching, and nestlings sharing the same nest had significantly more similar bacterial richness. Collectively, these results provide compelling evidence that bacterial species richness was associated with several aspects of the life history of their hosts.

  10. Taxonomic identification, phenanthrene uptake activity, and membrane lipid alterations of the PAH degrading Arthrobacter sp. strain Sphe3

    Energy Technology Data Exchange (ETDEWEB)

    Kallimanis, A.; Drainas, C.; Koukkou, A.I. [Ioannina Univ. (Greece). Sector of Organic Chemistry and Biochemistry; Frillingos, S. [Ioannina Univ. (Greece). Lab. of Biological Chemistry

    2007-09-15

    This report describes phenanthrene uptake as well as the effect of phenanthrene on the membrane phospholipid and fatty acid composition in a newly isolated bacterial strain, Sphe3, that we taxonomically identified as Arthrobacter sp. Strain Sphe3 is able to utilize phenanthrene as a carbon source at high rates and appears to internalize phenanthrene with two mechanisms: a passive diffusion when cells are grown on glucose, and an inducible active transport system when cells are grown on phenanthrene as a sole carbon source. Active transport followed Michaelis-Menten kinetics, and it was amenable to inhibition by 2,4-dinitrophenol and sodium azide. Evidence provided here indicates that apart from inducing an active PAH uptake, the presence of phenanthrene elicits significant changes in membrane fluidity.

  11. Screening micro-organisms for cadmium absorption from aqueous solution and cadmium absorption properties of Arthrobacter nicotianae.

    Science.gov (United States)

    Tsuruta, Takehiko; Umenai, Daishi; Hatano, Tomonobu; Hirajima, Tsuyoshi; Sasaki, Keiko

    2014-01-01

    To obtain basic information on how microbial cells absorb cadmium from aqueous solution, we examined cadmium absorption in various micro-organisms. Of 51 micro-organism strains tested, we found that some Gram-positive bacteria, such as, Arthrobacter nicotianae and Bacillus subtilis, and some actinomycetes, such as, Streptomyces flavoviridis and S. levoris were highly capable of absorbing cadmium from an aqueous solution. A. nicotianae absorbed the largest amount of cadmium, over 800 μmol cadmium per gram of dry wt. cells. However, cadmium absorption by A. nicotianae was affected by the solution pH, cadmium concentration, and cell density. The absorption of cadmium was very rapid. Some factors that affected cadmium absorption by A. nicotianae cells were also discussed.

  12. Species of the subfamily Triatominae Jeannel, 1919 (Hemiptera: Reduviidae present in the Collection of Chagas Disease Vectors (FIOCRUZ-COLVEC, State of Minas Gerais

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    Rita de Cássia Moreira de Souza

    2014-12-01

    Full Text Available Introduction Biological collections are depositories of information on different species and contribute to the knowledge, protection, conservation and maintenance of biodiversity. Methods A list of triatomine species currently included in the Collection of Chagas Disease Vectors (FIOCRUZ-COLVEC was prepared from the database made available by the Reference Center on Environmental Information. Results COLVEC curatorship houses 4,778 specimens of triatomines, of which 811 come from other American countries (Argentina, Bolivia, Colombia, Costa Rica, the United States of America, Guatemala, Mexico, Peru, Uruguay and Venezuela and 3,967 are autochthonous from Brazil. Altogether, 56 species of Chagas disease vectors are represented in the COLVEC: two species of the Tribe Cavernicolini Usinger, 1944; fifteen species of the tribe Rhodniini Pinto, 1926, of which 12 are of the genus Rhodnius and 3 are of the genus Psamolestes; and 39 species of the tribe Triatomini Jeannel, 1919, represented by the genus Dipetalogaster, two species of the genus Eratyrus, two of the genus Meccus, seven of the genus Panstrongylus and 27 of the genus Triatoma. Conclusions This list provides important data on the diversity of triatomines currently included in COLVEC, including the expanded area of Panstrongylus lutzi occurrence in the municipalities Pirapora and Januária, State of Minas Gerais. The maintenance and expansion of the collection ensures the preservation of biodiversity and further studies.

  13. Observation of particle-species dependence and collectivity in azimuthal correlations of pp collisions at the LHC

    CERN Document Server

    CMS Collaboration

    2016-01-01

    Measurements of two- and multi-particle angular correlations in pp collisions at $\\sqrt{s} = 5$, $7$, and $13~\\mathrm{TeV}$ are presented as a function of charged-particle multiplicity. The data, corresponding to an integrated luminosity of $1.0~\\mathrm{pb}^{-1}$ ($5~\\mathrm{TeV}$), $6.2~\\mathrm{pb}^{-1}$ ($7~\\mathrm{TeV}$), and $0.7~\\mathrm{pb}^{-1}$ ($13~\\mathrm{TeV}$), were collected using the CMS detector at the LHC. The second-order ($v_2$) and third-order ($v_3$) azimuthal anisotropy harmonics of unidentified charged particles, as well as $v_2$ of $\\text{K}_{\\text{S}}^{0}$ and $\\Lambda$/$\\overline{\\Lambda}$ particles, are extracted from long-range two-particle correlations as functions of particle multiplicity and transverse momentum, after correcting for the contribution of back-to-back jet correlations. A clear particle-species dependence of $v_2$ is observed for high-multiplicity pp events (e.g., with more than 105 charged particles produced within $|\\eta|<2.4$) at $\\sqrt{s} = 13~\\mathrm{TeV}$. Fo...

  14. Molecular Identification of Necrophagous Muscidae and Sarcophagidae Fly Species Collected in Korea by Mitochondrial Cytochrome c Oxidase Subunit I Nucleotide Sequences

    Directory of Open Access Journals (Sweden)

    Yu-Hoon Kim

    2014-01-01

    Full Text Available Identification of insect species is an important task in forensic entomology. For more convenient species identification, the nucleotide sequences of cytochrome c oxidase subunit I (COI gene have been widely utilized. We analyzed full-length COI nucleotide sequences of 10 Muscidae and 6 Sarcophagidae fly species collected in Korea. After DNA extraction from collected flies, PCR amplification and automatic sequencing of the whole COI sequence were performed. Obtained sequences were analyzed for a phylogenetic tree and a distance matrix. Our data showed very low intraspecific sequence distances and species-level monophylies. However, sequence comparison with previously reported sequences revealed a few inconsistencies or paraphylies requiring further investigation. To the best of our knowledge, this study is the first report of COI nucleotide sequences from Hydrotaea occulta, Muscina angustifrons, Muscina pascuorum, Ophyra leucostoma, Sarcophaga haemorrhoidalis, Sarcophaga harpax, and Phaonia aureola.

  15. Sibling species of the Anopheles funestus group, and their infection with malaria and lymphatic filarial parasites, in archived and newly collected specimens from northeastern Tanzania

    DEFF Research Database (Denmark)

    Derua, Yahya A; Alifrangis, Michael; Magesa, Stephen M;

    2015-01-01

    vectors of both malaria and lymphatic filariasis. METHODS: Archived (from 2005-2012) and newly collected (from 2014) specimens of the An. funestus group collected indoors using CDC light traps in villages in northeastern Tanzania were analysed. They were identified to sibling species by PCR based......, and Anopheles leesoni, with the first being by far the most common (overall 94.4%). When comparing archived specimens from 2005-2007 to those from 2008-2012, a small but statistically significant decrease in proportion of An. funestus s.s. was noted, but otherwise observed temporal changes in sibling species...... composition were minor. No P. falciparum was detected in archived specimens, while 8.3% of the newly collected An. funestus s.s. were positive for this parasite. The overall W. bancrofti infection rate decreased from 14.8% in the 2005-2007 archived specimens to only 0.5% in the newly collected specimens...

  16. Intertidal species inventory and quantitative data collected on Oahu and Maui, Islands of Hawaii during 2001 - 2005 (NODC Accession 0002447)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Two types of data sets generated by our project: species inventories and quantitative counts of key organisms. The species inventories are a compilation of data...

  17. Intertidal Species Inventory and Quantitative Data Collected on Oahu and Maui during 2001-2005 (NODC Accession 0002447)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Two types of data sets generated by our project: species inventories and quantitative counts of key organisms. The species inventories are a compilation of data...

  18. New Report of Two Species of Crabs, Cycloes granulosa and Pugettia vulgaris (Crustacea: Decapoda Collected from Korea

    Directory of Open Access Journals (Sweden)

    Yang, Kea Cheong

    2015-07-01

    Full Text Available Two species of crabs, Cycloes granulosa and Pugettia vulgaris, are described and illustrated for the first time in Korea. The former is the first species of calappoid genus Cycloes and characterized by having a minute lateral spine on the margin of carapace. The latter is a species of majoid crab and similar to P. pellucens. However, it can be distinguished by shorter rostral spines, a smaller hepatic spine, and a carapace entirely covered with short setae. In Korea the calappoid crab now includes seven species of three genera (Calappa, Mursia, and Cycloes and the majoid genus Pugettia consists of six species.

  19. New collections of freshwater crabs from northern Madagascar, with the description of a new species of Foza Reed & Cumberlidge, 2006 (Brachyura, Potamonautidae, and comments on their conservation status

    Directory of Open Access Journals (Sweden)

    Neil Cumberlidge

    2015-01-01

    Full Text Available We report here on recent collections of freshwater crabs from Antsiranana Province, northern Madagascar. The specimens belong to three species, one of which is new to science and is described here. This raises the number of species of freshwater crabs found in Madagascar to 17. All are endemic to the island and all belong to the Afrotropical family Potamonautidae Bott, 1970. The new species, Foza manonae sp. nov., is compared to other species in this genus, and an updated key is provided. It is distinguished from the other three congeners by characters of the male first gonopod, sternum, carapace, and cheliped. The conservation status of the Malagasy freshwater crab fauna is summarized and discussed in light of the new material reported on here belonging to two other species, Madagapotamon humberti Bott, 1965 and Foza ambohitra Cumberlidge & Meyer, 2009.

  20. Genome mining of the genetic diversity in the Aspergillus genus - from a collection of more than 30 Aspergillus species

    DEFF Research Database (Denmark)

    Rasmussen, Jane Lind Nybo; Vesth, Tammi Camilla; Theobald, Sebastian;

    In the era of high-throughput sequencing, comparative genomics can be applied for evaluating species diversity. In this project we aim to compare the genomes of 300 species of filamentous fungi from the Aspergillus genus, a complex task. To be able to define species, clade, and core features......, this project uses BLAST on the amino acid level to discover orthologs. With a potential of 300 Aspergillus species each having ~12,000 annotated genes, traditional clustering will demand supercomputing. Instead, our approach reduces the search space by identifying isoenzymes within each genome creating...... intragenomic protein families (iPFs), and then connecting iPFs across all genomes. The initial findings in a set of 31 species show that ~48% of the annotated genes are core genes (genes shared between all species) and 2-24% of the genes are defining the individual species. The methods presented here...

  1. The dynamics of questing ticks collected for 164 consecutive months off the vegetation of two landscape zones in the Kruger National Park (1988-2002). Part III. The less commonly collected species.

    Science.gov (United States)

    Gallivan, Gordon J; Spickett, Andrea; Heyne, Heloise; Spickett, Arthur M; Horak, Ivan G

    2011-04-19

    Despite many studies regarding tick ecology, limited information on long-term changes in tick populations exist. This study assessed the long-term population dynamics of the less frequently collected questing ixodid ticks in the Kruger National Park (KNP). From 1988 to 2002, monthly dragging of the vegetation was performed in three habitats (grassland, woodland and gully) at two sites in the KNP (Nhlowa Road, Landscape Zone 17, and Skukuza, Landscape Zone 4). Amblyomma marmoreum and Rhipicephalus evertsi evertsi were collected as larvae most commonly. Most A. marmoreum larvae were collected at Skukuza and numbers peaked from March to July. More R. evertsi evertsi larvae were collected at Nhlowa Road and numbers peaked in summer and in winter, while at Skukuza there was a single peak in spring. Haemaphysalis elliptica, Rhipicephalus simus and Rhipicephalus turanicus were collected as adults most commonly. More Ha. elliptica and R. turanicus were collected at Nhlowa Road than at Skukuza, while R. simus numbers from the two sites were approximately equal. Ha. elliptica were collected most often between February and June, and R. simus and R. turanicus during February and March. All three species were collected more frequently in gullies than in grassland or woodland. Their numbers increased in 1994/1995 following an eruption of rodents, the preferred hosts of the immature stages. The different host-seeking strategies of ticks largely determine the development stage at which they are likely to be collected during vegetation dragging and reflect a complex interaction between ticks, their hosts and the environment.

  2. Complete genome sequence of Arthrobacter sp. ERGS1:01, a putative novel bacterium with prospective cold active industrial enzymes, isolated from East Rathong glacier in India.

    Science.gov (United States)

    Kumar, Rakshak; Singh, Dharam; Swarnkar, Mohit Kumar; Singh, Anil Kumar; Kumar, Sanjay

    2015-11-20

    We report the complete genome sequence of Arthrobacter sp. ERGS1:01, a novel bacterium which produces industrial enzymes at low temperature. East Rathong glacier in Sikkim Himalayas is untouched and unexplored for microbial diversity though it has a rich source of glaciers, alpine and meadows. Genome sequence has provided the basis for understanding its adaptation under harsh condition of Himalayan glacier, its ability to produce cold active industrial enzymes and has unlocked opportunities for microbial bioprospection from East Rathong glacier.

  3. On the presence of Bufo nasicus Werner in Guiana, with a redescription of the species on the basis of recently collected material

    NARCIS (Netherlands)

    Hoogmoed, M.S.

    1977-01-01

    During research on material recently collected in Guyana and in Venezuelan Guiana, several specimens of the rare toad Bufo nasicus Werner, thus far only known from the holotype without known origin, were discovered. On the basis of this material the species is redescribed and some notes on its natur

  4. Darwin’s legacy to rove beetles (Coleoptera, Staphylinidae: A new genus and a new species, including materials collected on the Beagle’s voyage

    Directory of Open Access Journals (Sweden)

    Stylianos Chatzimanolis

    2014-02-01

    Full Text Available A species of xanthopygine rove beetles is described and figured here as Darwinilus sedarisi gen. n. and sp. n. The holotype was collected by Charles Darwin in Bahía Blanca, Argentina on the Beagle’s voyage. The contributions of Charles Darwin to rove beetle systematics are summarized briefly.

  5. Notes on the Hyadesia species (Acari, Astigmata, Hyadesidae) of the Oudemans collection, with a redescription of Hyadesia Vietsi Womersley, 1961

    NARCIS (Netherlands)

    Fain, A.

    1979-01-01

    INTRODUCTION The mites of the genus Hyadesia are of cosmopolitan distribution. They live in the intertidal area where they feed mainly on algae in salt water. Up to now 16 species have been described in this genus. Most of these species have been inadequately described and it is generally very diffi

  6. The spider collection (Arachnida: Araneae of the Zoological Museum of the Iranian Research Institute of Plant Protection, with new species records for Iran

    Directory of Open Access Journals (Sweden)

    Zamani, Alireza

    2015-11-01

    Full Text Available The spider collection of the Zoological Museum of the Iranian Research Institute of Plant Protection was studied during the summer of 2014. A total of 180 specimens, belonging to 25 families, 60 genera and 77 species were documented. Of these, the following nine species could be recorded from Iran for the first time: Alopecosa schmidti (Hahn, 1835, Anyphaena accentuata (Walckenaer, 1802, Crustulina sticta (O. P.-Cambridge, 1861, Enoplognatha mordax (Thorell, 1875, Ero tuberculata (De Geer, 1778, Salticus zebraneus (C. L. Koch, 1837, Pardosa aenigmatica Tongiorgi, 1966, Pardosa nebulosa (Thorell, 1872 and Tmarus piochardi (Simon, 1866. Morphological and geographical data are provided for the newly recorded species. Two species (P. aenigmatica and T. piochardi are illustrated and a map of localities is given.

  7. Evaluation of Arthrobacter aurescens Strain TC1 as Bioaugmentation Bacterium in Soils Contaminated with the Herbicidal Substance Terbuthylazine.

    Directory of Open Access Journals (Sweden)

    Vera P Silva

    Full Text Available In the last years the chloro-s-triazine active substance terbuthylazine has been increasingly used as an herbicide and may leave residues in the environment which can be of concern. The present study aimed at developing a bioaugmentation tool based on the soil bacterium Arthrobacter aurescens strain TC1 for the remediation of terbuthylazine contaminated soils and at examining its efficacy for both soil and aquatic compartments. First, the feasibility of growing the bioaugmentation bacterium inocula on simple sole nitrogen sources (ammonium and nitrate instead of atrazine, while still maintaining its efficiency to biodegrade terbuthylazine was shown. In sequence, the successful and quick (3 days bioremediation efficacy of ammonium-grown A. aurescens TC1 cells was proven in a natural soil freshly spiked or four-months aged with commercial terbuthylazine at a dose 10× higher than the recommended in corn cultivation, to mimic spill situations. Ecotoxicity assessment of the soil eluates towards a freshwater microalga supported the effectiveness of the bioaugmentation tool. Obtained results highlight the potential to decontaminate soil while minimizing terbuthylazine from reaching aquatic compartments via the soil-water pathway. The usefulness of this bioaugmentation tool to provide rapid environment decontamination is particularly relevant in the event of accidental high herbicide contamination. Its limitations and advantages are discussed.

  8. Production of Xylanase from Arthrobacter sp. MTCC 6915 Using Saw Dust As Substrate under Solid State Fermentation

    Directory of Open Access Journals (Sweden)

    Sevanan Murugan

    2011-01-01

    Full Text Available Saw dust was used as substrate for xylanase production from Arthrobacter sp. MTCC 6915. The study of period of incubation, temperature, pH, carbon, and nitrogen sources for xylanase production was optimized. Xylanase production was found to be optimum at an incubation period of 96 hrs (117.0 U/mL, temperature 30°C (105.0 U/mL, and pH 9.0 (102.9 U/mL. The results showed that the xylanase production was found to be higher in the presence of carboxymethylcellulose (176.4 U/mL and dextrose (126.0 U/mL. It was also observed that peptone (170.1 U/mL and beef extract (161.7 U/mL supported maximum xylanase production.The enzyme was characterized and found to be fairly active at pH 9 (764.4 U/mL and temperature 60°C (819 U/mL. Even in the present study, a major difference in the production temperature (30°C and optimal temperature (60°C of the enzyme activity was observed. However, the pH of the production media and the enzyme activity were found to be the same (pH 9.

  9. Harvest Records for Game Species Collected at Hillside, Mathews Brake, and Morgan Brake National Wildlife Refuges from 1998 to 2002

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — These harvest records were taken by Refuge employees at check stations between 1998 and 2002 involving archery, muzzle loading, and multiple game species

  10. Microsomal EROD data of fish liver sample assay from species collected in the Salt and Gila Rivers, Arizona

    Science.gov (United States)

    Nicks, Diane

    2017-01-01

    This dataset includes microsomal ERDO data from an assay done with liver samples from several fish species that are found in Arizona at sites that are being assessed for PBDE contamination. The data was created in September and October 2016.

  11. Simultaneous Detection and Identification of Aspergillus and Mucorales Species in Tissues Collected from Patients with Fungal Rhinosinusitis▿

    OpenAIRE

    2011-01-01

    Rapid detection and differentiation of Aspergillus and Mucorales species in fungal rhinosinusitis diagnosis are desirable, since the clinical management and prognosis associated with the two taxa are fundamentally different. We describe an assay based on a combination of broad-range PCR amplification and reverse line blot hybridization (PCR/RLB) to detect and differentiate the pathogens causing fungal rhinosinusitis, which include five Aspergillus species (A. fumigatus, A. flavus, A. niger, A...

  12. Temperature, salinity, nutrient, and species identification profiles collected by bottle, CTD, and net in the Pacific Ocean from 9/10/1990 - 10/23/1990 (NODC Accession 0000090)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Temperature, species identification, and other data were collected from HOKUHO MARU using net, bottle, and CTD casts in the Pacific Ocean. Data were collected from...

  13. The dynamics of questing ticks collected for 164 consecutive months off the vegetation of two landscape zones in the Kruger National Park (1988–2002. Part III. The less commonly collected species

    Directory of Open Access Journals (Sweden)

    Gordon J. Gallivan

    2011-02-01

    Full Text Available Despite many studies regarding tick ecology, limited information on long-term changes in tick populations exist. This study assessed the long-term population dynamics of the less frequently collected questing ixodid ticks in the Kruger National Park (KNP. From 1988 to 2002, monthly dragging of the vegetation was performed in three habitats (grassland, woodland and gully at two sites in the KNP (Nhlowa Road, Landscape Zone 17, and Skukuza, Landscape Zone 4. Amblyomma marmoreum and Rhipicephalus evertsi evertsi were collected as larvae most commonly. Most A. marmoreum larvae were collected at Skukuza and numbers peaked from March to July. More R. evertsi evertsi larvae were collected at Nhlowa Road and numbers peaked in summer and in winter, while at Skukuza there was a single peak in spring. Haemaphysalis elliptica, Rhipicephalus simus and Rhipicephalus turanicus were collected as adults most commonly. More Ha. elliptica and R. turanicus were collected at Nhlowa Road than at Skukuza, while R. simus numbers from the two sites were approximately equal. Ha. elliptica were collected most often between February and June, and R. simus and R. turanicus during February and March. All three species were collected more frequently in gullies than in grassland or woodland. Their numbers increased in 1994/1995 following an eruption of rodents, the preferred hosts of the immature stages. The different host-seeking strategies of ticks largely determine the development stage at which they are likely to be collected during vegetation dragging and reflect a complex interaction between ticks, their hosts and the environment.

  14. The genus Aphidura (Hemiptera, Aphididae in the collection of the Muséum national d’Histoire naturelle of Paris, with six new species

    Directory of Open Access Journals (Sweden)

    Juan M. Nieto Nafría

    2013-07-01

    Full Text Available Specimens were studied of 65 samples of the genus Aphidura (Aphididae, Aphidinae, Macrosiphini from the collection of the Muséum national d’Histoire naturelle (Paris. The possible synonymies of three pairs of species are discussed. New aphid host plant relationships are reported for A. bozhkoae, A. delmasi, A. ornata, A. pannonica and A. picta; this last species is recorded for first time from Afghanistan. The record of A. pujoli from Pakistan is refuted. The fundatrices, oviparous females and males of A. delmasi are described. Six new species are established: A. gallica sp. n. and A. amphorosiphon sp. n. from specimens caught on species of Silene (Caryophyllaceae from France and Iran, respectively, A. pakistanensis sp. n., A. graeca sp. n. and A. urmiensis sp. n. from specimens caught on species of Dianthus, Gypsophila and Spergula (Caryophyllaceae from Pakistan, Greece and Iran, respectively, and A. iranensis sp. n. from specimens caught on Prunus sp. from Iran. Modifications are made to the keys by Blackman and Eastop to aphids living on Dianthus, Gypsophyla, Silene, Spergula and Prinsepia and Prunus (Rosaceae. An identification key to apterous viviparous females of species of Aphidura is also provided.

  15. {sup 137}Cs and {sup 40}K in fruiting bodies of different fungal species collected in a single forest in southern Poland

    Energy Technology Data Exchange (ETDEWEB)

    Mietelski, Jerzy W., E-mail: Jerzy.mietelski@ifj.edu.p [Henryk Niewodniczanski Institute of Nuclear Physics, Polish Academy of Sciences, Radzikowskiego 152, 31-342 Krakow (Poland); Dubchak, Sergiy [Institute of Environmental Sciences, Jagiellonian University, Gronostajowa 7, 30-387 Krakow (Poland); Blazej, Sylwia [Henryk Niewodniczanski Institute of Nuclear Physics, Polish Academy of Sciences, Radzikowskiego 152, 31-342 Krakow (Poland); Anielska, Teresa; Turnau, Katarzyna [Institute of Environmental Sciences, Jagiellonian University, Gronostajowa 7, 30-387 Krakow (Poland)

    2010-09-15

    Fruiting bodies of fungi belonging to more than 70 species were collected within a few thousand square meter area of one forest during 2006 and 2007. The soil profile was collected to check the cumulative deposition of {sup 137}Cs, which was relatively high, equal to 64 {+-} 2 kBq/m{sup 2} (calculated for October 2006). The majority of this activity was in the first 6 cm. Fruitbodies were analyzed for radiocesium and {sup 40}K by means of gamma-spectrometry. The highest {sup 137}Cs activity was 54.1 {+-} 0.7 kBq/kg (dry weight) for a sample of Lactarius helvus collected in 2006. The results for 2006 were higher than those for 2007. In a few cases the traces of short-lived (T{sub 1/2} = 2.06 a) {sup 134}Cs were still found in samples. The importance of mycorrhizal fungi for radiocesium accumulation is confirmed. The differences in activity among the species are discussed in relation to observations and predictions from previous studies, where the change in relative accumulation between fruiting bodies of different species was at least partially explained by the differences in the depth of the mycelium localization in a litter/soil system. It is concluded that in some cases, such as Boletus edulis and Xerocomus badius, this prediction is fulfilled and therefore this explanation confirmed.

  16. Bacterial diversity assessed by cultivation-based techniques shows predominance of Staphylococccus species on coins collected in Lisbon and Casablanca.

    Science.gov (United States)

    de Carvalho, Carla C C R; Caramujo, Maria José

    2014-04-01

    Money is usually considered a source of infections, yet survival of bacteria on dry metal surfaces is limited. The aim of this work was to assess the bacterial numbers and diversity on coins collected in Casablanca and Lisbon as these two cities, on different continents and only 585 km apart, have diverse cultural habitats, but have similar climate. A cultivation-based characterisation of the bacterial community showed that a relatively low number of cells per area of coin were found on both Moroccan Dirhams and Euros (0.014 and 0.125 colony-forming units (CFU) mm(-2) , respectively). Most of the bacterial isolates were located near the rim of the coins, and coins collected in Europe contained more CFU/area of coin. Coins collected in Europe and transported in pockets presented a higher number of bacterial isolates (maximum 0.125 CFU mm(-2) ) than coins transported in wallets (maximum 0.042 CFU mm(-2) ), regardless of the gender of the person transporting them, suggesting that temperature and moisture might be key parameters for bacterial survival on metallic coins. Bacterial diversity was higher for coins collected in Casablanca relative to coins collected in Lisbon, and there was no evidence that it was dependent on the gender of the person transporting the coins or the place of transport (pockets or wallets). Curiously, the percentage of Staphylococcus strains was 44% of the total isolates on both currencies.

  17. The Value of Georeferenced Collection Records for Predicting Patterns of Mosquito Species Richness and Endemism in the Neotropics

    Science.gov (United States)

    2008-01-01

    hab- itat diversity predicts butterfl y species richness and community simi- larity in Canada . Proceedings of the National Academy of Sciences of...Onate , L . ( 2000 ) The use of specimen-label databases for conservation purposes: an example using Mexican papilionid and pierid butterfl ies

  18. Molecular detection of Anaplasma, Bartonella, and Borrelia species in ticks collected from migratory birds from Hong-do Island, Republic of Korea.

    Science.gov (United States)

    Kang, Jun-Gu; Kim, Heung-Chul; Choi, Chang-Yong; Nam, Hyun-Young; Chae, Hee-Young; Chong, Sung-Tae; Klein, Terry A; Ko, Sungjin; Chae, Joon-Seok

    2013-04-01

    Bird migration is a recurring annual and seasonal event undertaken by more than 100 species of birds in the southeast Asian and northeast Palearctic regions that pass through or remain for short periods from April to May and September to November at Hong-do Island, Republic of Korea (ROK). A total of 212 ticks (40 Haemaphysalis flava, 12 H. longicornis, 146 Ixodes turdus, 13 I. nipponensis, and 1 I. ornithophila) were collected from 65/2,161 (3.0%) migratory birds consisting of 21 species that were captured from January, 2008, through December, 2009, as part of the Migratory Birds Center, Hong-do bird banding program for studying bird migration patterns. Adult ticks were assayed individually while larvae and nymphs were pooled (1-22 and 1-6 ticks per pool, respectively) into 31 and 65 pools, respectively. Ticks were assayed for zoonotic pathogens by PCR using 16S rRNA, heat shock protein (groEL), and internal transcribed spacer (ITS) gene primers to amplify genera specific for Anapalsma, Bartonella, and Borrelia PCR amplicons. Using the 16S rRNA-based nested PCR, A. phagocytophilum (n=1) was detected in I. nipponensis collected from Zoothera sibirica and A. bovis (n=1) was detected in I. turdus collected from Emberiza chrysophrys. Borrelia turdi 16S rRNA genes (n=3) were detected in I. turdus and I. nipponensis collected from Turdus pallidus and Zoothera aurea. Borrelia spp. 16S rRNA genes (n=4) were detected in Ixodes ticks collected from Emberiza tristrami, T. pallidus, and Z. aurea. The Bartonella grahamii ITS gene (n=1) was detected by nested PCR assay in I. turdus collected from Z. aurea. These results provide insight into the potential role of migratory birds in the dispersal of ticks and associated tick-borne pathogens throughout their ranges in Asia.

  19. Applying the collective impact approach to address non-native species: A case study of the Great Lakes Phragmites Collaborative

    Science.gov (United States)

    Braun, H. B.; Kowalski, Kurt P.; Hollins, K.

    2016-01-01

    To address the invasion of non-native Phragmites in the Great Lakes, researchers at the U.S. Geological Survey—Great Lakes Science Center partnered with the Great Lakes Commission in 2012 to establish the Great Lakes Phragmites Collaborative (GLPC). The GLPC is a regional-scale partnership established to improve collaboration among stakeholders and increase the effectiveness of non-native Phragmites management and research. Rather than forming a traditional partnership with a narrowly defined goal, the GLPC follows the principles of collective impact to engage stakeholders, guide progress, and align resources to address this complex, regional challenge. In this paper, the concept and tenets of collective impact are described, the GLPC is offered as a model for other natural resource-focused collective impact efforts, and steps for establishing collaboratives are presented. Capitalizing on the interactive collective impact approach, the GLPC is moving toward a broadly accepted common agenda around which agencies and individuals will be able to better align their actions and generate measureable progress in the regional campaign to protect healthy, diverse ecosystems from damage caused by non-native Phragmites.

  20. Isolation and characterization of atrazine-degrading Arthrobacter sp. AD26 and use of this strain in bioremediation of contaminated soil

    Institute of Scientific and Technical Information of China (English)

    LI Qingyan; LI Ying; ZHU Xikun; CAI Baoli

    2008-01-01

    A bacterial strain (AD26) capable of utilizing atrazine as a sole nitrogen source for growth was isolated from an industrial wastewatersample by enrichment culture. The 16S rRNA gene sequencing identified AD26 as anArthrobacter sp. PCR assays indicated that AD26contained atrazine-degrading genes trzN and atzBC. The trzN gene of AD26 only differs from the trzN ofArthrobacter aurescens TC1by one base (A→T at 907) and one amino acid (Met→Leu at 303). The specific activity of trzN of AD26 in crude cell extract was0.28 U/mg, which was 1.2 times that of TC 1. This strain has shown faster growth and atrazine-degradation rates in atrazine-containingminimal media than two well characterized atrazine-degrading bacteria, Pseudomonas sp. ADP and Arthrobacter aurescens TC 1. Afterincubating for 48 h at 30℃, the OD600 of AD26 reached 2.6 compared with 1.33 of ADP. AD26 was capable of degrading 500 mg/Lof atrazine in minimal medium at 95% in 72 h, while the degradative rates by TC1 and ADP were only 90% and 86%, respectively. Abioremediation trial of contaminated soil has indicated that AD26 can degrade as high as 98% of atrazine contained in soil (300 mg/kg)after incubating for 20 d at 26℃, nominating this strain as a good candidate for use in bioremediation programs.

  1. Exotic and indigenous viruses infect wild populations and captive collections of temperate terrestrial orchids (Diuris species) in Australia.

    Science.gov (United States)

    Wylie, Stephen J; Li, Hua; Dixon, Kingsley W; Richards, Helen; Jones, Michael G K

    2013-01-01

    Four species of Diuris temperate terrestrial orchids from wild and captive populations were tested for the presence of polyadenylated RNA viruses. The genomes of three exotic viruses were determined: two potyviruses, Bean yellow mosaic virus and Ornithogalum mosaic virus, and the polerovirus Turnip yellows virus. The genomes of five indigenous viruses were detected, including four novel species. They were the potyvirus Blue squill virus A, another potyvirus, two proposed capilloviruses, and a partitivirus. Partitivirus infection is of interest as this group of viruses is also associated with endophytic fungi (mycorrhizae) that are necessary for the germination, growth, development of many terrestrial orchids. Sequence divergence data indicate post-European, pre-European, and endemic origins for these viruses via inoculum from introduced and native plants. The implications of the findings of this study for orchid conservation, and particularly reintroduction programs where viruses may be spread inadvertently to wild populations from infected propagation sources, are discussed.

  2. Simultaneous detection and identification of Aspergillus and mucorales species in tissues collected from patients with fungal rhinosinusitis.

    Science.gov (United States)

    Zhao, Zuotao; Li, Lili; Wan, Zhe; Chen, Wei; Liu, Honggang; Li, Ruoyu

    2011-04-01

    Rapid detection and differentiation of Aspergillus and Mucorales species in fungal rhinosinusitis diagnosis are desirable, since the clinical management and prognosis associated with the two taxa are fundamentally different. We describe an assay based on a combination of broad-range PCR amplification and reverse line blot hybridization (PCR/RLB) to detect and differentiate the pathogens causing fungal rhinosinusitis, which include five Aspergillus species (A. fumigatus, A. flavus, A. niger, A. terreus, and A. nidulans) and seven Mucorales species (Mucor heimalis, Mucor racemosus, Mucor cercinelloidea, Rhizopus arrhizus, Rhizopus microsporus, Rhizomucor pusillus, and Absidia corymbifera). The assay was validated with 98 well-characterized clinical isolates and 41 clinical tissue specimens. PCR/RLB showed high sensitivity and specificity, with 100% correct identifications of 98 clinical isolates and no cross-hybridization between the species-specific probes. Results for five control isolates, Candida albicans, Fusarium solani, Scedosporium apiospermum, Penicillium marneffei, and Exophiala verrucosa, were negative as judged by PCR/RLB. The analytical sensitivity of PCR/RLB was found to be 1.8 × 10(-3) ng/μl by 10-fold serial dilution of Aspergillus genomic DNA. The assay identified 35 of 41 (85.4%) clinical specimens, exhibiting a higher sensitivity than fungal culture (22 of 41; 53.7%) and direct sequencing (18 of 41; 43.9%). PCR/RLB similarly showed high specificity, with correct identification 16 of 18 specimens detected by internal transcribed spacer (ITS) sequencing and 16 of 22 detected by fungal culture, but it also has the additional advantage of being able to detect mixed infection in a single clinical specimen. The PCR/RLB assay thus provides a rapid and reliable option for laboratory diagnosis of fungal rhinosinusitis.

  3. Simultaneous Detection and Identification of Aspergillus and Mucorales Species in Tissues Collected from Patients with Fungal Rhinosinusitis▿

    Science.gov (United States)

    Zhao, Zuotao; Li, Lili; Wan, Zhe; Chen, Wei; Liu, Honggang; Li, Ruoyu

    2011-01-01

    Rapid detection and differentiation of Aspergillus and Mucorales species in fungal rhinosinusitis diagnosis are desirable, since the clinical management and prognosis associated with the two taxa are fundamentally different. We describe an assay based on a combination of broad-range PCR amplification and reverse line blot hybridization (PCR/RLB) to detect and differentiate the pathogens causing fungal rhinosinusitis, which include five Aspergillus species (A. fumigatus, A. flavus, A. niger, A. terreus, and A. nidulans) and seven Mucorales species (Mucor heimalis, Mucor racemosus, Mucor cercinelloidea, Rhizopus arrhizus, Rhizopus microsporus, Rhizomucor pusillus, and Absidia corymbifera). The assay was validated with 98 well-characterized clinical isolates and 41 clinical tissue specimens. PCR/RLB showed high sensitivity and specificity, with 100% correct identifications of 98 clinical isolates and no cross-hybridization between the species-specific probes. Results for five control isolates, Candida albicans, Fusarium solani, Scedosporium apiospermum, Penicillium marneffei, and Exophiala verrucosa, were negative as judged by PCR/RLB. The analytical sensitivity of PCR/RLB was found to be 1.8 × 10−3 ng/μl by 10-fold serial dilution of Aspergillus genomic DNA. The assay identified 35 of 41 (85.4%) clinical specimens, exhibiting a higher sensitivity than fungal culture (22 of 41; 53.7%) and direct sequencing (18 of 41; 43.9%). PCR/RLB similarly showed high specificity, with correct identification 16 of 18 specimens detected by internal transcribed spacer (ITS) sequencing and 16 of 22 detected by fungal culture, but it also has the additional advantage of being able to detect mixed infection in a single clinical specimen. The PCR/RLB assay thus provides a rapid and reliable option for laboratory diagnosis of fungal rhinosinusitis. PMID:21325541

  4. Multilocus sequence typing of a global collection of pasteurella multocida isolates from cattle and other host species demonstrates niche association

    OpenAIRE

    Hotchkiss, E.J.; Hodgson, J.C.; Lainson, F. A.; Zadoks, R.N.

    2011-01-01

    Abstract Background Pasteurella multocida causes disease in many host species throughout the world. In bovids, it contributes to bovine respiratory disease (BRD) and causes haemorrhagic septicaemia (HS). Previous studies have suggested that BRD-associated P. multocida isolates are of limited diversity. A multilocus sequence typing (MLST) scheme for P. multocida was used to determine whether the low levels of diversity reported are due to the limited discriminatory power of the typing method u...

  5. Enhanced U(VI) release from autunite mineral by aerobic Arthrobacter sp. in the presence of aqueous bicarbonate

    Energy Technology Data Exchange (ETDEWEB)

    Katsenovich, Yelena; Carvajal, Denny A.; Wellman, Dawn M.; Lagos, Leonel

    2012-04-20

    The bacterial effect on U(VI) leaching from the autunite mineral (Ca[(UO{sub 2})(PO{sub 4})]{sub 2} {center_dot} 3H{sub 2}O) was investigated to provide a more comprehensive understanding into important microbiological processes affecting autunite stability within subsurface bicarbonate-bearing environments. Experiments were performed in a culture of G975 Arthrobacter oxydans strain, herein referred to as G975, a soil bacterium previously isolated from Hanford Site soil. 91 mg of autunite powder and 50 mL of phosphorus-limiting sterile media were amended with bicarbonate ranging between 1-10 mM in glass reactor bottles and inoculated with G975 strain after the dissolution of autunite was at steady state. SEM observations indicated G975 formed a biofilm on the autunite surface and penetrated the mineral cleavages. The mineral surface colonization by bacteria tended to increase concomitantly with bicarbonate concentrations. Additionally, a sterile cultureware with inserts was used in non-contact bioleaching experiments where autunite and bacteria cells were kept separately. The data suggest the G975 bacteria is able to enhance U(VI) leaching from autunite without the direct contact with the mineral. In the presence of bicarbonate, the damage to bacterial cells caused by U(VI) toxicity was reduced, yielding similar values for total organic carbon (TOC) degradation and cell density compared to U(VI)-free controls. The presence of active bacterial cells greatly enhanced the U(VI) bioleaching from autunite in bicarbonate-amended media.

  6. Enhanced U(VI) release from autunite mineral by aerobic Arthrobacter sp. in the presence of aqueous bicarbonate

    Energy Technology Data Exchange (ETDEWEB)

    Katsenovich, Yelena P.; Carvajal, Denny A.; Wellman, Dawn M.; Lagos, Leonel E.

    2012-05-01

    The bacterial effect on U(VI) release from the autunite mineral (Ca[(UO2)(PO4)]2•3H2O) was investigated to provide a more comprehensive understanding of the important microbiological processes affecting autunite stability within subsurface bicarbonate-bearing environments. Experiments were performed in a culture of the Arthrobacter oxydans G975 strain, herein referred to as G975, a soil bacterium previously isolated from Hanford Site soil. 91 mg of autunite powder and 50 mL of phosphorous-limiting sterile media were amended with bicarbonate (ranging between 1 and 10 mM) in glass reactor bottles and inoculated with the G975 strain after the dissolution of autunite was at steady state. SEM observations indicated that G975 formed a biofilm on the autunite surface and penetrated the mineral cleavages. The mineral surface colonization by bacteria tended to increase concomitantly with bicarbonate concentrations. Additionally, a sterile culture-ware with inserts was used in non-contact dissolution experiments where autunite and bacteria cells were kept separately. The data suggest that G975 bacteria is able to enhance the release of U(VI) from autunite without direct contact with the mineral. In the presence of bicarbonate, the damage to bacterial cells caused by U(VI) toxicity was reduced, yielding similar values for total organic carbon (TOC) degradation and cell density compared to U(VI)-free controls. The presence of active bacterial cells greatly enhanced the release of U(VI) from autunite in bicarbonate-amended media.

  7. In Vitro Activity of Seven Systemically Active Antifungal Agents against a Large Global Collection of Rare Candida Species as Determined by CLSI Broth Microdilution Methods ▿

    Science.gov (United States)

    Diekema, D. J.; Messer, S. A.; Boyken, L. B.; Hollis, R. J.; Kroeger, J.; Tendolkar, S.; Pfaller, M. A.

    2009-01-01

    Five Candida species (C. albicans, C. glabrata, C. tropicalis, C. parapsilosis, and C. krusei) account for over 95% of invasive candidiasis cases. Some less common Candida species have emerged as causes of nosocomial candidiasis, but there is little information about their in vitro susceptibilities to antifungals. We determined the in vitro activities of fluconazole, voriconazole, posaconazole, amphotericin B, anidulafungin, caspofungin, and micafungin against invasive, unique patient isolates of Candida collected from 100 centers worldwide between January 2001 and December 2007. Antifungal susceptibility testing was performed by the CLSI M27-A3 method. CLSI breakpoints for susceptibility were used for fluconazole, voriconazole, anidulafungin, caspofungin, and micafungin, while a provisional susceptibility breakpoint of ≤1 μg/ml was used for amphotericin and posaconazole. Of 14,007 Candida isolates tested, 658 (4.7%) were among the less common species. Against all 658 isolates combined, the activity of each agent, expressed as the MIC50/MIC90 ratio (and the percentage of susceptible isolates) was as follows: fluconazole, 1/4 (94.8%); voriconazole, 0.03/0.12 (98.6%); posaconazole, 0.12/0.5 (95.9%); amphotericin, 0.5/2 (88.3%); anidulafungin, 0.5/2 (97.4%); caspofungin, 0.12/0.5 (98.0%); and micafungin, 0.25/1 (99.2%). Among the isolates not susceptible to one or more of the echinocandins, most (68%) were C. guilliermondii. All isolates of the less common species within the C. parapsilosis complex (C. orthopsilosis and C. metapsilosis) were susceptible to voriconazole, posaconazole, anidulafungin, caspofungin, and micafungin. Over 95% of clinical isolates of the rare Candida species were susceptible to the available antifungals. However, activity did vary by drug-species combination, with some species (e.g., C. rugosa and C. guilliermondii) demonstrating reduced susceptibilities to commonly used agents such as fluconazole and echinocandins. PMID:19710283

  8. Essential oil composition, total phenolic, flavonoid contents, and antioxidant activity of Thymus species collected from different regions of Iran.

    Science.gov (United States)

    Tohidi, Behnaz; Rahimmalek, Mehdi; Arzani, Ahmad

    2017-04-01

    In this study, the essential oil (EO) composition, flavonoid and phenolic contents, and antioxidant activities of fourteen Thymus accessions belonging to ten species were evaluated. Gas chromatography-mass spectrometry (GC-MS) analysis revealed the presence of 38 compounds with the major constituents including thymol (12.4-79.74%), carvacrol (4.37-42.14%), geraniol (0.3-22.44%), and p-cymene (0.8-12.86%). Cluster analysis identified three groups of high thymol, geraniol/linalool, and high carvacrol. The highest phenolic and flavonoid contents were detected in T. daenensis-1 (70.6mg tannic acid equivalents (TAE) g(-1) DW) and T. vulgaris (8.55mg quercetin equivalents (QE) g(-1) DW), respectively. The antioxidant activities of the samples were determined using 1,1-diphenyl-2-picrylhydrazyl (DPPH) and reducing power assay. The results demonstrated that T. daenensis-3 (IC50=273.36), T. vulgaris (IC50=289.3), and T. fedtschenkoi-3 (IC50=339.22) possessed higher antioxidant activities than the others. Finally, the Thymus species with high bioactive compounds may be recommended for further food applications.

  9. Effect of Arthrobacter agilis UMCV2 on germination and growth of Pinus devoniana Lindley

    Directory of Open Access Journals (Sweden)

    Wilber Montejo-Mayo

    2016-03-01

    Full Text Available Soil microorganisms are essential for growth, emergence and development in all plants. In our study we decided to evaluate the effect that A. agilis UMCV2 rhizobacteria had on germination and growth of plants of economic-forest interest as P. devoniana to an age of 65 days. Our results show that the UMCV2 bacteria promoted growth of P. devoniana at this early stage of development, further highlighting that despite the short time of interaction between these two, the bacterium was able to increase the rate of germination, increase the size of shoot and generate a proliferation of lateral roots. The data shows a huge potential for using inoculum both in the greenhouse and in open ground and generate a growth promoting species of interest in both agricultural and forest, thereby reducing production periods depending on the crop.

  10. MOLECULAR IDENTIFICATION AND BARCODING OF TWO SHRIMP SPECIES (PARAPENAEOPSIS SCULPTILLIS AND PARAPENAEOPSIS HARDWIKII COLLECTED FROM GORAI CREEK OF MUMBAI, WEST COAST OF INDIA

    Directory of Open Access Journals (Sweden)

    G. Zodape

    2016-03-01

    Full Text Available Purpose. Molecular identification of two shrimp species (Parapenaeopsis sculptillis and Parapenaeopsis hardwikii from Gorai creek, Mumbai, west coast of India. Methodology. The specimens of Shrimps Parapenaeopsis sculptillis and Parapenaeopsis hardwikii were collected from Gorai creek. The samples were morphologically identified as per the FAO guidelines manual and by using taxonomic keys. Genomic DNA was extracted from muscle tissue using DNA isolation kit (Hi Media, India. Molecular identification was carried out by using cytochrome oxidase subunit I (COI, gene sequencing by using specific primers LCO1490 and HCO2198. Phylogenetic tree was constructed by neighbour-joining method using mega 6 software to determine the relationship of the samples with known sequences in database. Findings. The P. sculptillis and P. hardwikii showed closest sequence similarities with P. cornuta (84% and Thysanopoda obtusifrons (83%. A phylogenetic tree was constructed based on COI gene, which separates the populations into thirteen stable clades. The results on DNA barcoding and current distribution of P. culptillis and P. hardwikii and their haplotype P. cornuta and Thysanopoda obtusifrons showed phylogenetic relationship among them, providing insights into the adaptive evolution of DNA sequences. The phylogenetic divergence analyses of the selected specie showed worldwide distribution because the above said species and their haplotype species showed complex sequence diversities that are having functional relevance with energy metabolism and environmental adaptation. Originality. First attempt to use molecular genetic techniques for the identification of Parapenaeopsis sculptillis and Parapenaeopsis hardwikii and to compare their DNA sequences with other haplotype species such as P. cornuta and Thysanopoda obtusifrons. Practical value. The obtained data can be used for shrimp species identification and studies of their phylogenetics and population genetics.

  11. Identification of a recombinant inulin fructotransferase (difructose dianhydride III forming) from Arthrobacter sp. 161MFSha2.1 with high specific activity and remarkable thermostability.

    Science.gov (United States)

    Wang, Xiao; Yu, Shuhuai; Zhang, Tao; Jiang, Bo; Mu, Wanmeng

    2015-04-08

    Difructose dianhydride III (DFA III) is a functional carbohydrate produced from inulin by inulin fructotransferase (IFTase, EC 4.2.2.18). In this work, an IFTase gene from Arthrobacter sp. 161MFSha2.1 was cloned and expressed in Escherachia coli. The recombinant enzyme was purified by metal affinity chromatography. It showed significant inulin hydrolysis activity, and the produced main product from inulin was determined as DFA III by nuclear magnetic resonance analysis. The molecular mass of the purified protein was calculated to be 43 and 125 kDa by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and gel filtration, respectively, suggesting the native enzyme might be a homotrimer. The recombinant enzyme showed maximal activity as 2391 units/mg at pH 6.5 and 55 °C. It displayed the highest thermostability among previously reported IFTases (DFA III forming) and was stable up to 80 °C for 4 h of incubation. The smallest substrate was determined as nystose. The conversion ratio of inulin to DFA III reached 81% when 100 g/L inulin was catalyzed by 80 nM recombinant enzyme for 20 min at pH 6.5 and 55 °C. All of these data indicated that the IFTase (DFA III forming) from Arthrobacter sp. 161MFSha2.1 had great potential for industrial DFA III production.

  12. Key enzymes enabling the growth of Arthrobacter sp. strain JBH1 with nitroglycerin as the sole source of carbon and nitrogen.

    Science.gov (United States)

    Husserl, Johana; Hughes, Joseph B; Spain, Jim C

    2012-05-01

    Flavoprotein reductases that catalyze the transformation of nitroglycerin (NG) to dinitro- or mononitroglycerols enable bacteria containing such enzymes to use NG as the nitrogen source. The inability to use the resulting mononitroglycerols limits most strains to incomplete denitration of NG. Recently, Arthrobacter strain JBH1 was isolated for the ability to grow on NG as the sole source of carbon and nitrogen, but the enzymes and mechanisms involved were not established. Here, the enzymes that enable the Arthrobacter strain to incorporate NG into a productive pathway were identified. Enzyme assays indicated that the transformation of nitroglycerin to mononitroglycerol is NADPH dependent and that the subsequent transformation of mononitroglycerol is ATP dependent. Cloning and heterologous expression revealed that a flavoprotein catalyzes selective denitration of NG to 1-mononitroglycerol (1-MNG) and that 1-MNG is transformed to 1-nitro-3-phosphoglycerol by a glycerol kinase homolog. Phosphorylation of the nitroester intermediate enables the subsequent denitration of 1-MNG in a productive pathway that supports the growth of the isolate and mineralization of NG.

  13. Altered transcription levels of endocrine associated genes in two fisheries species collected from the Great Barrier Reef catchment and lagoon.

    Science.gov (United States)

    Kroon, Frederieke J; Hook, Sharon E; Jones, Dean; Metcalfe, Suzanne; Henderson, Brent; Smith, Rachael; Warne, Michael St J; Turner, Ryan D; McKeown, Adam; Westcott, David A

    2015-03-01

    The Great Barrier Reef (GBR) is chronically exposed to agricultural run-off containing pesticides, many of which are known endocrine disrupting chemicals (EDCs). Here, we measure mRNA transcript abundance of two EDC biomarkers in wild populations of barramundi (Lates calcarifer) and coral trout (Plectropomus leopardus and Plectropomus maculatus). Transcription levels of liver vitellogenin (vtg) differed significantly in both species amongst sites with different exposures to agricultural run-off; brain aromatase (cyp19a1b) revealed some differences for barramundi only. Exposure to run-off from sugarcane that contains pesticides is a likely pathway given (i) significant associations between barramundi vtg transcription levels, catchment sugarcane land use, and river pesticide concentrations, and (ii) consistency between patterns of coral trout vtg transcription levels and pesticide distribution in the GBR lagoon. Given the potential consequences of such exposure for reproductive fitness and population dynamics, these results are cause for concern for the sustainability of fisheries resources downstream from agricultural land uses.

  14. Native Michigan plants stimulate soil microbial species changes and PAH remediation at a legacy steel mill.

    Science.gov (United States)

    Thomas, John C; Cable, Edward; Dabkowski, Robert T; Gargala, Stephanie; McCall, Daniel; Pangrazzi, Garett; Pierson, Adam; Ripper, Mark; Russell, Donald K; Rugh, Clayton L

    2013-01-01

    A 1.3-acre phytoremediation site was constructed to mitigate polyaromatic hydrocarbon (PAH) contamination from a former steel mill in Michigan. Soil was amended with 10% (v/v) compost and 5% (v/v) poultry litter. The site was divided into twelve 11.89 m X 27.13 m plots, planted with approximately 35,000 native Michigan perennials, and soils sampled for three seasons. Soil microbial density generally increased in subplots of Eupatorium perfoliatum (boneset), Aster novae-angliae (New England aster), Andropogon gerardii (big bluestem), and Scirpus atrovirens (green bulrush) versus unplanted subplots. Using enumeration assays with root exudates, PAH degrading bacteria were greatest in soils beneath plants. Initially predominant, Arthrobacter were found capable of degrading a PAH cocktail in vitro, especially upon the addition of root exudate. Growth of some Arthrobacter isolates was stimulated by root exudate. The frequency of Arthrobacter declined in planted subplots with a concurrent increase in other species, including secondary PAH degraders Bacillus and Nocardioides. In subplots supporting only weeds, an increase in Pseudomonas density and little PAH removal were observed. This study supports the notion that a dynamic interplay between the soil, bacteria, and native plant root secretions likely contributes to in situ PAH phytoremediation.

  15. PLASMID-ENCODED PHTHALATE CATABOLIC PATHWAY IN ARTHROBACTER KEYSERI 12B: BIOTRANSFORMATIONS OF 2-SUBSTITUTED BENZOATES AND THEIR USE IN CLONING AND CHARACTERIZATION OF PHTHALATE CATABOLISM GENES AND GENE PRODUCTS

    Science.gov (United States)

    Several 2-substituted benzoates (including 2-trifluoromethyl-, 2-chloro-, 2-bromo-, 2-iodo-, 2-nitro-, 2-methoxy-, and 2-acetyl-benzoates) were converted by phthalate-grown Arthrobacter keyseri 12B to the corresponding 2-substituted 3,4-dihydroxybenzoates (protocatechuates)...

  16. Assess the prevalence rate of Campylobacter genus and Campylobacter jejuni species in raw milk collected from the Amol City by Multiplex- Polymerase Chain Reaction

    Directory of Open Access Journals (Sweden)

    Ali Dabiri

    2016-03-01

    Full Text Available Background & Objective: Campylobacter can be transmitted through the raw milk. The purpose of this study was to determine the prevalence of Campylobacter genus and Campylobacter jejuni (C. jejuni species in raw milk samples. Materials & Methods: In this study, 72 samples of raw milk were collected of the platforms milk in the Amol city in summer. Phenotypic identification of Campylobacter genus and C. jejuni species using microbiology laboratory methods and molecular identification of this bacterium using Multiplex- Polymerase Chain Reaction (M-PCR were performed. The data was calculated using the SPSS 16.0 software and the Fisher's exact test (p < 0.05. Results: Among the 72 samples, 13.88% of samples were contaminated with C. jejuni and 2.77% were contaminated with Campylobacter genus. The highest prevalence rate for this bacterium was in July (20.83% and the lowest prevalence rate was in September (12.5%. The significant difference between the prevalence of the Campylobacter genus and C. jejuni species in raw milk samples in various months of summer was not observed (p = 0.07. Conclusion: This study showed the raw milk contamination with Campylobacter, and thereby the sanitation in the dairy food production places and the use of fast and accurate method to identify this bacterium is important.

  17. Entomological and ecological aspects of six sylvatic species of triatomines (Hemiptera, Reduviidae from the collection of the National Biodiversity Institute of Costa Rica, Central America

    Directory of Open Access Journals (Sweden)

    Rodrigo Zeledón

    2001-08-01

    Full Text Available A total of 797 specimens of wild adult triatomines, belonging to six species from the entomological collections of the Costa Rican National Biodiversity Institute, was studied from the standpoint of their relative abundance, as reflected by light traps, distribution in the country, seasonal variations and climatic and altitudinal preferences. Triatoma dimidiata was the most abundant species (32.9% of the total specimens, with a very extensive distribution in different ecological zones, being more common between 100 to 400 m above sea level mainly at the end of the dry season. T. dispar was the third in frequency (21.5%, with narrower distribution, more abundant between 600 to 800 m and scarce during the dry season. Panstrongylus geniculatus and P. rufotuberculatus, second and fourth in frequency (22.1% and 15.1%, respectively, were widely distributed on both the Pacific and Caribbean basins, the former being more common between 80 to 270 m all year round and the latter below 800 m mainly during the first semester. Eratyrus cuspidatus which represented only 4.9% of the insects, was also present on both basins mainly below 200 m with a tendency to be scarce during certain months of the year, and was found in all types of ecological zones. Finally, Rhodnius pallescens, the least abundant species (3.6% was restricted to very humid areas below 20 m, on the north side and Caribbean basin. With the exception of R. pallescens, males were more commonly found than females. Some epidemiological implications related to the six species are discussed.

  18. Isavuconazole and nine comparator antifungal susceptibility profiles for common and uncommon Candida species collected in 2012: application of new CLSI clinical breakpoints and epidemiological cutoff values.

    Science.gov (United States)

    Castanheira, Mariana; Messer, Shawn A; Rhomberg, Paul R; Dietrich, Rachel R; Jones, Ronald N; Pfaller, Michael A

    2014-08-01

    The in vitro activity of isavuconazole and nine antifungal comparator agents was assessed using reference broth microdilution methods against 1,421 common and uncommon species of Candida from a 2012 global survey. Isolates were identified using CHROMagar, biochemical methods and sequencing of ITS and/or 28S regions. Candida spp. were classified as either susceptible or resistant and as wild type (WT) or non-WT using CLSI clinical breakpoints or epidemiological cutoff values, respectively, for the antifungal agents. Isolates included 1,421 organisms from 21 different species of Candida. Among Candida spp., resistance to all 10 tested antifungal agents was low (0.0-7.9 %). The vast majority of each species of Candida, with the exception of Candida glabrata, Candida krusei, and Candida guilliermondii (modal MICs of 0.5 µg/ml), were inhibited by ≤0.12 µg/ml of isavuconazole (99.0 %; range 94.3 % [Candida tropicalis] to 100.0 % [Candida lusitaniae and Candida dubliniensis]). C. glabrata, C. krusei, and C. guilliermondii were largely inhibited by ≤1 µg/ml of isavuconazole (89.7, 96.9 and 92.8 %, respectively). Decreased susceptibility to isavuconazole was most prominent with C. glabrata where the modal MIC for isavuconazole was 0.5 µg/ml for those strains that were SDD to fluconazole or WT to voriconazole, and was 4 µg/ml for those that were either resistant or non-WT to fluconazole or voriconazole, respectively. In conclusion, these data document the activity of isavuconazole and generally the low resistance levels to the available antifungal agents in a large, contemporary (2012), global collection of molecularly characterized species of Candida.

  19. Species identification and other data collected from visual observation and other data from AIRCRAFT in the North Pacific Ocean and Puget Sound from 30 November 1977 to 04 October 1978 (NODC Accession 7800394)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Species identification and other data were collected using visual observation and other instruments from AIRCRAFT in the Puget Sound and North Pacific Ocean. Data...

  20. Captive-rearing of Gunnison sage-grouse from egg collection to adulthood to foster proactive conservation and recovery of a conservation-reliant species.

    Science.gov (United States)

    Apa, Anthony D; Wiechman, Lief A

    2015-01-01

    Gunnison sage-grouse (Centrocercus minimus) are distributed across southwestern Colorado and southeastern Utah, United States. Their distribution has decreased over the past century and the species has been listed as threatened by the U.S. Fish and Wildlife Service. Reduced genetic diversity, small population size, and isolation may affect Gunnison sage-grouse population persistence. Population augmentation can be used to counteract or mitigate these issues, but traditional translocation efforts have yielded mixed, and mostly unsuccessful, results. Captive-rearing is a viable, although much debated, conservation approach to bolster wild conservation-reliant species. Although there have been captive-rearing efforts with greater sage-grouse (C. urophasianus), to date, no information exists about captive-rearing methods for Gunnison sage-grouse. Therefore, we investigated techniques for egg collection, artificial incubation, hatch, and captive-rearing of chicks, juveniles, subadults, and adults for Gunnison sage-grouse. In 2009 we established a captive flock that produced viable eggs. From 2009-2011, we collected and artificially incubated 206 Gunnison sage-grouse eggs from 23 wild and 14 captive females. Our hatchability was 90%. Wild-produced eggs were heavier than captive-produced eggs and lost mass similarly during incubation. We produced 148 chicks in captivity and fed them a variety of food sources (e.g. invertebrates to commercial chow). Bacterial infections were the primary cause of chick mortality, but we successfully reduced the overall mortality rate during the course of our study. Conservationists and managers should consider the utility in developing a captive-rearing program or creating a captive population as part of a proactive conservation effort for the conservation-reliant Gunnison sage-grouse.

  1. Assessment of Trace Element Levels in Muscle Tissues of Fish Species Collected from a River, Stream, Lake, and Sea in Sakarya, Turkey

    Directory of Open Access Journals (Sweden)

    Tülay Küpeli

    2014-01-01

    Full Text Available Levels of some trace and essential elements, including Al, B, Ba, Cr, Cu, Fe, Mn, Ni, Sr, and Zn, were determined in 17 different fish species from Sakarya River, Çark Stream, Sapanca Lake, and Western Black Sea using ICP-OES after microwave (MW digestion procedure. During preparation of samples for analysis, wet and MW digestion methods were also compared. Accuracy of the digestion methods was checked by the analysis of DORM-3 reference material (Fish Protein Certified Reference Material for Trace Metals. Concentrations of trace elements were found as Al: 6.5–48.5, B: 0.06–3.30, Ba: 0.09–2.92, Cr: 0.02–1.64, Cu: 0.13–2.28, Fe: 7.28–39.9, Mn: 0.08–11.4, Ni: 0.01–26.1, Sr: 0.17–13.5, and Zn: 11.5–52.9 µg g−1. The obtained results were compared with other studies published in the literature. Trace element levels in various fish species collected from waters in Sakarya region were found to be below limit values provided by Turkish Food Codex (TFC, Food and Agriculture Organization (FAO, and World Health Organization (WHO.

  2. The measurement of H 2SO 4 and other sulfate species at Tuxedo, New York with a thermal analysis flame photometric detector and simultaneously collected quartz filter samples

    Science.gov (United States)

    Morandi, Maria T.; Kneip, Theo J.; Geoffery Cobourn, W.; Husar, Rudolf B.; Lioy, Paul J.

    A study of major atmospheric particulate sulfate species was conducted during 30 July 1980-1983 September 1980 in Sterling Forest, a rural area in Tuxedo, NY, not affected by major local sources of pollution. In situ measurements of total sulfate, sulfuric acid and ammonium sulfate ammonium bisulfate were made using Thermal Analysis-Flame Photometric Detection (TA-FPD). These measurements were compared to the total sulfate and strong acid (H +) concentration measured in simultaneously collected 12 h, treated quartz filter samples. The concentration of NH 4HSO 4 was inferred from the difference between the total strong acid concentration and the sulfuric acid measurements, so that total sulfate and acid concentrations could be balanced. A major sulfate pollution episode occurred during the period of 27-29 August. The concentration of H + showed an excess above that necessary to account for the TA-FPD H 2SO 4 measurement, indicating the presence of NH 4 HSO 4. The maximum 12 h average concentrations of H 2SO 4, NH 4HSO 4 and (NH 4) 2SO 4 were 5.18, 11.42 and 10.08 μg m -3 as SO 42- respectively, and were measured from 9:15 to 21:15 on 28 August. The study demonstrated the usefulness of concurrent measurements of airborne particulate sulfate by filter extraction and TA-FPD to identify acidic sulfate species.

  3. Cadmium bioaccumulation in three benthic fish species, Salaria basilisca,Zosterisessor ophiocephalus and Solea vulgaris collected from the Guff of Gabes in Tunisia

    Institute of Scientific and Technical Information of China (English)

    BARHOUMI Sana; MESSAOUDI Imed; DELI Tmim; SAID Khaled; KERKENI Abdelhamid

    2009-01-01

    To select a marine teleost fish which can be used as a bioindicator of cadmium (Cd) pollution in the Gulf of Gabes in Tunisia, Cd concentrations in liver and gill were compared in three benthic fish species including Salaria basilisca, Zosterisessor ophiocephalus and Solea vulgaris. Fish samples were collected from three selected sites in the Gulf of Gabes, with different degrees of Cd contamination: the industrialized coast of Sfax (S1), the coast of Douar Chart (S2) and the coast of Luza ($3). The results shows that Cd concentrations in both sediment and water collected from S1 were significantly higher (pS2>S3. The highest concentration of Cd was detected in the liver of S. basilisca, and only S. basilisca showed bioaccumulation factors (BAF) greater than 1 in all studied sites. In S1 and S2, BAF values respect the following order: S. basilisca>Z. ophiocephalus>S. vulgaris. These results of significant bioaccumulation of Cd, in terms of hepatic concentrations and bioaccamulation factors, indicated that S. basilisca can be used as bioindicator to evaluate the evolution of Cd pollution in the Gulf of Gahes.

  4. A new cold-adapted β-D-galactosidase from the Antarctic Arthrobacter sp. 32c – gene cloning, overexpression, purification and properties

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    Kur Józef

    2009-07-01

    Full Text Available Abstract Background The development of a new cold-active β-D-galactosidases and microorganisms that efficiently ferment lactose is of high biotechnological interest, particularly for lactose removal in milk and dairy products at low temperatures and for cheese whey bioremediation processes with simultaneous bio-ethanol production. Results In this article, we present a new β-D-galactosidase as a candidate to be applied in the above mentioned biotechnological processes. The gene encoding this β-D-galactosidase has been isolated from the genomic DNA library of Antarctic bacterium Arthrobacter sp. 32c, sequenced, cloned, expressed in Escherichia coli and Pichia pastoris, purified and characterized. 27 mg of β-D-galactosidase was purified from 1 L of culture with the use of an intracellular E. coli expression system. The protein was also produced extracellularly by P. pastoris in high amounts giving approximately 137 mg and 97 mg of purified enzyme from 1 L of P. pastoris culture for the AOX1 and a constitutive system, respectively. The enzyme was purified to electrophoretic homogeneity by using either one step- or a fast two step- procedure including protein precipitation and affinity chromatography. The enzyme was found to be active as a homotrimeric protein consisting of 695 amino acid residues in each monomer. Although, the maximum activity of the enzyme was determined at pH 6.5 and 50°C, 60% of the maximum activity of the enzyme was determined at 25°C and 15% of the maximum activity was detected at 0°C. Conclusion The properties of Arthrobacter sp. 32cβ-D-galactosidase suggest that this enzyme could be useful for low-cost, industrial conversion of lactose into galactose and glucose in milk products and could be an interesting alternative for the production of ethanol from lactose-based feedstock.

  5. Seasonal changes in Fe species and soluble Fe concentration in the atmosphere in the Northwest Pacific region based on the analysis of aerosols collected in Tsukuba, Japan

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    Y. Takahashi

    2013-08-01

    Full Text Available Atmospheric iron (Fe can be a significant source of nutrition for phytoplankton inhabiting remote oceans, which in turn has a large influence on the Earth's climate. The bioavailability of Fe in aerosols depends mainly on the fraction of soluble Fe (= [FeSol]/[FeTotal], where [FeSol] and [FeTotal] are the atmospheric concentrations of soluble and total Fe, respectively. However, the numerous factors affecting the soluble Fe fraction have not been fully understood. In this study, the Fe species, chemical composition, and soluble Fe concentrations in aerosols collected in Tsukuba, Japan were investigated over a year (nine samples from December 2002 to October 2003 to identify the factors affecting the amount of soluble Fe supplied into the ocean. The soluble Fe concentration in aerosols is correlated with those of sulfate and oxalate originated from anthropogenic sources, suggesting that soluble Fe is mainly derived from anthropogenic sources. Moreover, the soluble Fe concentration is also correlated with the enrichment factors of vanadium and nickel emitted by fossil fuel combustion. These results suggest that the degree of Fe dissolution is influenced by the magnitude of anthropogenic activity, such as fossil fuel combustion. X-ray absorption fine structure (XAFS spectroscopy was performed in order to identify the Fe species in aerosols. Fitting of XAFS spectra coupled with micro X-ray fluorescence analysis (μ-XRF showed the main Fe species in aerosols in Tsukuba to be illite, ferrihydrite, hornblende, and Fe(III sulfate. Moreover, the soluble Fe fraction in each sample measured by leaching experiments is closely correlated with the Fe(III sulfate fraction determined by the XAFS spectrum fitting, suggesting that Fe(III sulfate is the main soluble Fe in the ocean. Another possible factor that can control the amount of soluble Fe supplied into the ocean is the total Fe(III concentration in the atmosphere, which was high in spring due to the high

  6. Seasonal changes in Fe species and soluble Fe concentration in the atmosphere in the Northwest Pacific region based on the analysis of aerosols collected in Tsukuba, Japan

    Directory of Open Access Journals (Sweden)

    Y. Takahashi

    2013-03-01

    Full Text Available Atmospheric iron (Fe can be a significant source of nutrition for phytoplankton inhabiting remote oceans, which in turn has a large influence on the Earth's climate. The bioavailability of Fe in aerosols depends mainly on the fraction of soluble Fe (= [FeSol]/[FeTotal], where [FeSol] and [FeTotal] are the atmospheric concentrations of soluble and total Fe, respectively. However, the numerous factors affecting the soluble Fe fraction have not been fully understood. In this study, the Fe species, chemical composition, and soluble Fe concentrations in aerosols collected in Tsukuba, Japan were investigated over a year (nine samples from December 2002 to October 2003 to identify the factors affecting the amount of soluble Fe supplied into the ocean. The soluble Fe concentration in aerosols is correlated with those of sulfate and oxalate originated from anthropogenic sources, suggesting that soluble Fe is mainly derived from anthropogenic sources. Moreover, the soluble Fe concentration is also correlated with the enrichment factors of vanadium and nickel emitted by fossil fuel combustion. These results suggest that the degree of Fe dissolution is influenced by the magnitude of anthropogenic activity, such as fossil fuel combustion. X-ray absorption fine structure (XAFS spectroscopy was performed in this study to identify the Fe species in aerosols. The fitting of XAFS spectra coupled with micro X-ray fluorescence analysis (XRF determined the main Fe species in aerosols in Tsukuba to be illite, ferrihydrite, hornblende, and Fe(III sulfate. Moreover, the soluble Fe fraction in each sample measured by leaching experiments is closely correlated with the Fe(III sulfate fraction determined by the XAFS spectrum fitting, suggesting that Fe(III sulfate is the main soluble Fe in the ocean. Another possible factor that can control the amount of soluble Fe supplied into the ocean is the total Fe(III concentration in the atmosphere, which was high in spring due to

  7. Spatial distribution and temporal trends of soft-bottom marine benthic alien species collected during the period 1989-2008 in the Nervión estuary (southeastern Bay of Biscay)

    Science.gov (United States)

    Zorita, Izaskun; Solaun, Oihana; Borja, Angel; Franco, Javier; Muxika, Iñigo; Pascual, Marta

    2013-10-01

    As the introduction of alien species represents one of the most important causes of biodiversity loss, it is crucial to study the distribution of alien species in order to control or eradicate their introduction and spread. Thus, the present study aimed to analyse the spatial distribution and temporal trends of soft-bottom marine benthic alien species collected during 20 years in the Nervión estuary, southeastern Bay of Biscay. Results indicated that, from a total of 6688 species records, 117 corresponded to alien species. Likewise, from a total of 742 different species identified, 23 species were classified as alien species. The two most frequently recorded alien species, Pseudopolydora paucibranchiata and Monocorophium acherusicum, appeared mainly at the intermediate part of the estuary that suffered historically an intense pollution. The presence and abundance of soft-bottom alien species became more evident since the mid-nineties, when the widening of the Bilbao Harbour occurred, together with a water quality improvement and the industry decline. Finally, although the identified alien species are considered as not invasive, the spread of alien species in the estuary might be considered as a threat.

  8. ECONOMIC VALUE OF SOME LEGUMINOUS PLANT SPECIES OF THE COLLECTIONS FROM THE BOTANICAL GARDEN (INSTITUTE OF THE ACADEMY OF SCIENCES OF MOLDOVA

    Directory of Open Access Journals (Sweden)

    Alexandru TELEUTA

    2016-12-01

    Full Text Available The results of the evaluation of the growth and development rates, the seed productivity, the green mass yield, the biochemical composition and the content of amino acids, phosphorous and calcium, the nutritive and energy value of the forage, as well as the biomethane productivity of local ecotypes of the leguminous species maintained in monoculture, in the collection of the Botanical Garden (Institute of the Academy of Sciences of Moldova (BG ASM: Astragalus ponticus, Coronilla varia, Lotus corniculatus, Medicago falcata, Onobrychis arenaria and Trifolium repens are presented in this article. Control variants – the traditional forage crops: Medicago sativa and Onobrychis viciifolia. The local ecotypes of the studied leguminous species were characterized by different growth and development rates. Coronilla varia and Lotus corniculatus, in the 2nd-3rd years, could be harvested, for the first time, 5 days earlier than Medicago sativa, but Medicago falcata and Onobrychis viciifolia – 18 days later. The green mass yield varied from 0.83 kg/m2 to 4.08 kg/m2. The studied ecotypes reached amounts of 0.60-0.89 nutritive units/kg and metabolizable energy 8.05-9.90 MJ/kg of dry matter, the content of digestible protein, of 106.28-225.09 g/nutritive unit, met the zootechnical standards; seed production: 19.12-83.00 g/m2; the biomethane yield ranged from 692 to 3197 m3/ha. Higher yield of natural forage, dry matter and biomethane was produced by Onobrychis arenaria and Coronilla varia.

  9. Non-phytoseiid Mesostigmata within citrus orchards in Florida: species distribution, relative and seasonal abundance within trees, associated vines and ground cover plants and additional collection records of mites in citrus orchards.

    Science.gov (United States)

    Childers, Carl C; Ueckermann, Eduard A

    2015-03-01

    Seven citrus orchards on reduced- to no-pesticide spray programs in central and south central Florida were sampled for non-phytoseiid mesostigmatid mites. Inner and outer canopy leaves, fruits, twigs and trunk scrapings were sampled monthly between August 1994 and January 1996. Open flowers were sampled in March from five of the sites. A total of 431 samples from one or more of 82 vine or ground cover plants were sampled monthly in five of the seven orchards. Two of the seven orchards (Mixon I and II) were on full herbicide programs and vines and ground cover plants were absent. A total of 2,655 mites (26 species) within the families: Ascidae, Blattisociidae, Laelapidae, Macrochelidae, Melicharidae, Pachylaelapidae and Parasitidae were identified. A total of 685 mites in the genus Asca (nine species: family Ascidae) were collected from within tree samples, 79 from vine or ground cover plants. Six species of Blattisociidae were collected: Aceodromus convolvuli, Blattisocius dentriticus, B. keegani, Cheiroseius sp. near jamaicensis, Lasioseius athiashenriotae and L. dentatus. A total of 485 Blattisociidae were collected from within tree samples compared with 167 from vine or ground cover plants. Low numbers of Laelapidae and Macrochelidae were collected from within tree samples. One Zygoseius furciger (Pachylaelapidae) was collected from Eleusine indica. Four species of Melicharidae were identified from 34 mites collected from within tree samples and 1,190 from vine or ground cover plants: Proctolaelaps lobatus was the most abundant species with 1,177 specimens collected from seven ground cover plants. One Phorytocarpais fimetorum (Parasitidae) was collected from inner leaves and four from twigs. Species of Ascidae, Blattisociidae, Melicharidae, Laelapidae and Pachylaelapidae were collected from 31 of the 82 vine or ground cover plants sampled, representing only a small fraction of the total number of Phytoseiidae collected from the same plants. Including the

  10. Biogeochemical plant–soil interaction: Variable element composition in leaves of four plant species collected along a south–north transect at the southern tip of Norway

    Energy Technology Data Exchange (ETDEWEB)

    Reimann, C., E-mail: clemens.reimann@ngu.no [Geological Survey of Norway (NGU), PO Box 6315 Sluppen, N-7491 Trondheim (Norway); Englmaier, P. [Department of Freshwater Ecology, Faculty of Life Science, University of Vienna, Althanstr. 14, A-1090 Vienna (Austria); Fabian, K. [Geological Survey of Norway (NGU), PO Box 6315 Sluppen, N-7491 Trondheim (Norway); Gough, L. [US Geological Survey National Centre, MS 954, Reston, VA 20192 (United States); Lamothe, P. [US Geological Survey, Denver Federal Centre, Box 25046, MS-964, Denver, CO 80225 (United States); Smith, D. [US Geological Survey, Denver Federal Centre, Box 25046, MS-973, Denver, CO 80225 (United States)

    2015-02-15

    Leaves from four different plant species (birch, willow, juniper, and heather) together with samples of the soil O and C horizons were collected at 44–46 sites along a south-to-north transect extending inland for 200 km from the southern tip of Norway. The transect covers one of the steepest vegetation gradients on Earth, crossing six vegetation zones. Juniper and heather are evergreen, and preferably exclude potentially toxic elements to avoid their accumulation in assimilating tissues, birch and willow shed their leaves in autumn together with the load of potentially toxic elements, and thus can tolerate the uptake of such elements. The plant leaves show the highest concentrations for B, Ca, K, Mg, Mn, P, Rb and S. In the soil O-horizon Ag, Au, As, Bi, Cu, Ge, Hg, In, Pb, Sb, Se, Sn, Te and W are enriched with respect to the C-horizon, whilst Mn and Rb are depleted. Cadmium, Sr and Zn are enriched in willow and Cs, Na and Tl in heather. In terms of concentration gradients from the coast inland, two different patterns are detected: 1) short range with an almost exponential decrease of concentrations from the coast, which appears to be typical for seaspray-related element input, and 2) long range with an almost linear decrease of concentrations with distance from the coast. These patterns differ among the four species, even for one and the same element. Inter-element correlation is different from material to material. Along the transect each of the different plants at the same site individually adapts to the available element combination. High linear correlations in the plants occur between the lanthanides (La, Ce, Y), and interestingly, between P and Ti. The plant/soil system appears highly non-linear and self-regulated. - Highlights: • Plant–soil element uptake and interactions were studied along a 200 km transect. • 53 elements were analysed in leaves of 4 plants and 2 soil horizons. • Element relations within and between the materials revealed

  11. Interaction mechanism between Arthrobacter oxydans and BaP-Cd%氧化节杆菌与苯并[a]芘-镉交互作用机理

    Institute of Scientific and Technical Information of China (English)

    邓军; 尹华; 叶锦韶; 彭辉; 秦华明; 龙焰; 何宝燕; 张娜

    2010-01-01

    利用HPLC、FTIR分析技术,研究了氧化节杆菌(Arthrobacter oxydans)对水体中苯并[a]芘(BaP)-镉(Cd)复合污染物交互作用机理.结果表明,BaP、Cd及BaP-Cd复合污染均对菌株的正常生长产生影响,其影响程度为:BaP-Cd>Cd>BaP;使用该菌投加到BaP、Cd浓度均为1 mg·L~(-1)的BaP-Cd复合污染无机盐溶液中,30 ℃、130 r·min~(-1),培养5 d后,体系BaP、Cd的残留量分别为0.39、0.65 mg·L~(-1);添加一定浓度的H_2O_2并保持体系呈偏碱性更适于该复合污染的处理.红外扫描分析显示,在微生物作用下,BaP的结构发生改变,菌株降解BaP和吸附Cd的过程主要与羟基、CC键、酰胺基团和C-H键有关.

  12. Probing the Role of Two Critical Residues in Inulin Fructotransferase (DFA III-Producing) Thermostability from Arthrobacter sp. 161MFSha2.1.

    Science.gov (United States)

    Yu, Shuhuai; Wang, Xiao; Zhang, Tao; Jiang, Bo; Mu, Wanmeng

    2016-08-10

    Inulin fructotransferase (IFTase) is an important enzyme that produces di-d-fructofuranose 1,2':2,3' dianhydride (DAF III), which is beneficial for human health. Present investigations mainly focus on screening and characterizing IFTase, including catalytic efficiency and thermostability, which are two important factors for enzymatic industrial applications. However, few reports aimed to improve these two characteristics based on the structure of IFTase. In this work, a structural model of IFTase (DFA III-producing) from Arthrobacter sp. 161MFSha2.1 was constructed through homology modeling. Analysis of this model reveals that two residues, Ser-309 and Ser-333, may play key roles in the structural stability. Therefore, the functions of the two residues were probed by site-directed mutagenesis combined with the Nano-DSC method and assays for residual activity. In contrast to other mutations, single mutation of serine 309 (or serine 333) to threonine did not decrease the enzymatic stability, whereas double mutation (serine 309 and serine 333 to threonine) can enhance thermostability (by approximately 5 °C). The probable mechanisms for this enhancement were investigated.

  13. capA, a cspA-like gene that encodes a cold acclimation protein in the psychrotrophic bacterium Arthrobacter globiformis SI55.

    Science.gov (United States)

    Berger, F; Normand, P; Potier, P

    1997-09-01

    By use of Arthrobacter globiformis SI55, a psychrotrophic bacterium capable of growth between -5 and +32 degrees C, we cloned and sequenced capA, a gene homologous to cspA encoding the major cold shock protein in Escherichia coli. The deduced protein sequence has a high level of identity with the sequences of other CspA-related proteins from various sources, and no particular residue or domain that could be specific to cold-adapted microorganisms emerged. We show that CapA was produced very rapidly following cold shock, but unlike its mesophilic counterparts, it was still expressed during prolonged growth at low temperature. Its synthesis is regulated at the translational level, and we showed that growth resumption following a temperature downshift correlated with CapA expression. Transient inhibitions in protein synthesis during the first stages of the cold shock response severely impaired the subsequent acclimation of A. globiformis SI55 to low temperature and delayed CapA expression. The cold shock response in A. globiformis SI55 is an adaptative process in which CapA may play a crucial role. We suggest that low-temperature acclimation is conditioned mainly by the ability of cells to restore an active translational machinery after cold shock in a process that may be different from that present in mesophiles.

  14. Diplectanids from Mycteroperca spp. (Epinephelidae) in the Mediterranean Sea: Redescriptions of six species from material collected off Tunisia and Libya, proposal for the 'Pseudorhabdosynochus riouxi group’, and a taxonomic key

    Science.gov (United States)

    Neifar, Lassad; Justine, Jean-Lou

    2017-01-01

    Diplectanid monogeneans are gill parasites that can infect fish in huge numbers and thus become harmful, especially in maricultured fish. It is therefore useful to have taxonomic tools, such as keys, to identify species. The following diplectanid species from groupers of the Mediterranean Sea were studied: five species of Pseudorhabdosynochus Yamaguti, 1958, including P. riouxi (Oliver, 1986) Kritsky & Beverley-Burton, 1986 from the dusky grouper Mycteroperca marginata, P. enitsuji Neifar & Euzet, 2007, P. bouaini Neifar & Euzet, 2007, P. dolicocolpos Neifar & Euzet, 2007 and P. sinediscus Neifar & Euzet, 2007 from the goldblotch grouper M. costae, and Echinoplectanum echinophallus (Euzet & Oliver, 1965) Justine & Euzet, 2006 from the dusky grouper. New material was obtained from fish collected from off Tunisia and Libya and compared to the type-material and voucher specimens in museum collections. Identifications of fish were confirmed by barcoding of cytochrome c oxidase subunit I (COI) sequences. The sclerotized vagina was considered the most important structure for systematics. The three species P. riouxi, P. bouaini, and P. enitsuji share a common general structure of the sclerotized vagina with a conspicuous spherical secondary chamber. We thus propose the ‘Pseudorhabdosynochus riouxi group’ to accommodate them. Pseudorhabdosynochus dolicocolpos has an elongate vaginal structure that is completely different from all its congeneric species reported from the Mediterranean Sea, and Pseudorhabdosynochus sinediscus has a sclerotized vagina in which the secondary chamber is not visible, and a haptor without squamodiscs. A taxonomic key to diplectanid species on Mycteroperca spp. in the Mediterranean Sea is proposed; it includes ten species of Pseudorhabdosynochus and one species of Echinoplectanum. PMID:28152034

  15. Characterizing the Catalytic Potential of Deinococcus, Arthrobacter and other Robust Bacteria in Contaminated Subsurface Environments of the Hanford Site

    Energy Technology Data Exchange (ETDEWEB)

    Daly, Michael J.

    2007-07-23

    Progress is briefly summarized in these areas: ionizing radiation resistance in bacteria; a hypothesis regarding ionizing radiation resistance emerging for bacterial cells; transcriptome analysis of irradiated D. radiodurans and Shewanella oneidensis; the role of metal reduction in Mn-dependnet Deinococcal species; and engineered Deinococcus strains as models for bioremediation. Key findings are also reported regarding protein oxidation as a possible key to bacterial desiccation resistance, and the whole-genome sequence of the thermophile Deinococcus geothermalis.

  16. Inoculation of PAH-degrading strains of Fusarium solani and Arthrobacter oxydans in rhizospheric sand and soil microcosms: microbial interactions and PAH dissipation.

    Science.gov (United States)

    Thion, Cécile; Cébron, Aurélie; Beguiristain, Thierry; Leyval, Corinne

    2013-07-01

    Very little is known about the influence of bacterial-fungal ecological interactions on polycyclic aromatic hydrocarbon (PAH) dissipation in soils. Fusarium solani MM1 and Arthrobacter oxydans MsHM11 can dissipate PAHs in vitro. We investigated their interactions and their effect on the dissipation of three PAHs-phenanthrene (PHE), pyrene (PYR) and dibenz(a,h)anthracene (DBA)-in planted microcosms, in sterile sand or non-sterile soil. In sterile sand microcosms planted with alfalfa, the two microbes survived and grew, without any significant effect of co-inoculation. Co-inoculation led to the dissipation of 46 % of PHE after 21 days. In soil microcosms, whether planted with alfalfa or not, both strains persisted throughout the 46 days of the experiment, without any effect of co-inoculation or of alfalfa, as assessed by real-time PCR targeting taxon-level indicators, i.e. Actinobacteria 16S rDNA and the intergenic transcribed spacer specific to the genus Fusarium. The microbial community was analyzed by temporal temperature gradient electrophoresis and real-time PCR targeting bacterial and fungal rDNA and PAH-ring hydroxylating dioxygenase genes. These communities were modified by PAH pollution, which selected PAH-degrading bacteria, by the presence of alfalfa and, concerning the bacterial community, by inoculation. PHE and PYR concentrations significantly decreased (91 and 46 %, respectively) whatever the treatment, but DBA concentration significantly decreased (30 %) in planted and co-inoculated microcosms only.

  17. In Silico Approach to Support that p-Nitrophenol Monooxygenase from Arthrobacter sp. Strain JS443 Catalyzes the Initial Two Sequential Monooxygenations.

    Science.gov (United States)

    Kallubai, Monika; Amineni, Umamaheswari; Mallavarapu, Megharaj; Kadiyala, Venkateswarlu

    2015-06-01

    p-Nitrophenol (PNP), used primarily for manufacturing pesticides and dyes, has been recognized as a priority environmental pollutant. It is therefore important to reduce the input of this toxicant into the environment and to establish approaches for its removal from the contaminated sites. PNP monooxygenase, a novel enzyme from Gram-positive bacteria like Arthrobacter sp. and Bacillus sp., that comprises two components, a flavoprotein reductase and an oxygenase, catalyzes the initial two sequential monooxygenations to convert PNP to trihydroxybenzene. Accurate and reliable prediction of this enzyme-substrate interactions and binding affinity are of vital importance in understanding these catalytic mechanisms of the two sequential reactions. As crystal structure of the enzyme has not yet been published, we built a homology model for PNP monooxygenase using crystallized chlorophenol 4-monooxygenase from Burkholderia cepacia AC1100 (3HWC) as the template. The model was assessed for its reliability using PROCHECK, ERRAT and ProSA. Molecular docking of the physiological substrates, PNP and 4-nitrocatechol (4-NC), was carried out using Glide v5.7 implemented in Maestro v9.2, and the binding energies were calculated to substantiate the prediction. Docking complexes formed by molecular level interactions of PNP monooxygenase-PNP/4-NC without or with the cofactors, FAD and NADH, showed good correlation with the established experimental evidence that the two-component PNP monooxygenase catalyzes both the hydroxylation of PNP and the oxidative release of nitrite from 4-NC in B. sphaericus JS905. Furthermore, molecular dynamics simulations performed for docking complexes using Desmond v3.0 showed stable nature of the interactions as well.

  18. Arthrobacter aurescens TC1 Atrazine Catabolism Genes trzN, atzB, and atzC Are Linked on a 160-Kilobase Region and Are Functional in Escherichia coli

    OpenAIRE

    Sajjaphan, Kannika; Shapir, Nir; Wackett, Lawrence P; Palmer, Michael; Blackmon, Barbara; Tomkins, Jeff; Sadowsky, Michael J.

    2004-01-01

    Arthrobacter aurescens strain TC1 metabolizes atrazine to cyanuric acid via TrzN, AtzB, and AtzC. The complete sequence of a 160-kb bacterial artificial chromosome clone indicated that trzN, atzB, and atzC are linked on the A. aurescens genome. TrzN, AtzB, and AtzC were shown to be functional in Escherichia coli. Hybridization studies localized trzN, atzB, and atzC to a 380-kb plasmid in A. aurescens strain TC1.

  19. The types of Palaearctic species of the families Apionidae, Rhynchitidae, Attelabidae and Curculionidae in the collection of Étienne Louis Geoffroy (Coleoptera, Curculionoidea

    Directory of Open Access Journals (Sweden)

    Alonso-Zarazaga, M. A.

    2008-06-01

    Full Text Available The study of 131 more or less complete Curculionoid specimens of the collection Étienne Louis Geoffroy, conserved in the Muséum d’Histoire Naturelle de Paris (Entomologie has permitted the identification of several nominal species that were nomina dubia and the establishment of several new synonymies and combinations, and, in some cases, the reversion of precedence following Art. 23.9 of the Code, declaring nomina protecta and nomina oblita. New synonymies are (the first term is the valid name: Lixus filiformis (Fabricius, 1781 = Curculio longus Gmelin, 1790; Lasiorhynchites cavifrons (Gyllenhal, 1833 nom. protectum = Rhinomacer viridis Geoffroy, 1785, nom. oblitum; Byctiscus betulae (Linnaeus, 1758 = Rhinomacer auratus Geoffroy, 1785; Neocoenorrhinus pauxillus (Germar, 1824 nom. protectum = Rhinomacer caeruleus Geoffroy, 1785, nom. oblitum; Deporaus betulae (Linnaeus, 1758 = Curculio nigrostriatus Goeze, 1777 = Rhinomacer niger Geoffroy, 1785 = Curculio fuliginosus Gmelin, 1790; Coniocleonus hollbergii (F√•hraeus, 1842 = Curculio sulcatus Goeze, 1777 = Curculio sulcatus Geoffroy, 1785 = Curculio sulcatus Gmelin, 1790; Larinus iaceae (Fabricius, 1775 = Curculio carduelis Goeze, 1777; Hypera postica (Gyllenhal, 1813, nom. protectum = Curculio fasciolatus Geoffroy, 1785, nom. oblitum; Charagmus griseus (Fabricius, 1775 = Curculio cupreosquamosus Goeze, 1777 = Curculio intersectus Geoffroy, 1785 = Curculio squamosus Gmelin, 1790; Sitona hispidulus (Fabricius, 1777 = Curculio griseus Goeze, 1777 = Curculio modestus Geoffroy, 1785 = Curculio geoffroaei Gmelin, 1790; Aulacobaris cuprirostris (Fabricius, 1787 = Curculio viridisericeus Goeze, 1777; Cleopomiarus plantarum (Germar, 1824, nom. protectum =

  20. "Symmetrical" hermit crabs of the family Pylochelidae (Crustacea: Decapoda: Anomura) collected by the "BIOPAPUA" and "PAPUA NIUGINI" expeditions in the Papua New Guinea, with descriptions of two new species.

    Science.gov (United States)

    Komai, Tomoyuki; Chan, Tin-Yam

    2016-03-09

    Collections made during the recent expeditions to Papua New Guinea ("BIOPAPUA", 2010; "PAPUA NIUGINI", 2012) yielded a total of 12 species from the "symmetrical" hermit crab family Pylochelidae, including two new to science: Bathycheles incisus (Forest, 1987), B. integer (Forest, 1987), Cheiroplatea laticauda Boas, 1926, C. pumicicola Forest, 1987, C. rotundioculus n. sp., Pylocheles mortensenii Boas, 1926, and Xylocheles macrops (Forest, 1987) (Pylochelinae); Parapylocheles scorpio (Alcock, 1894), Trizocheles manningi Forest, 1987, T. moosai Forest, 1987, T. sakaii Forest, 1987, and T. spinidigitus n. sp. (Trizochelinae). Affinities of the two new species are discussed. Parapylocheles scorpio, Trizocheles manningi and T. sakaii are recorded from the South Pacific for the first time. Revised identification keys to species of Cheiroplatea and Trizocheles are provided.

  1. WATER DEPTH, SPECIES IDENTIFICATION, SPECIES IDENTIFICATION - LIFE STAGE, species abundance and SPECIES IDENTIFICATION - WET WEIGHT trawl data collected in the North Pacific Ocean on the CHARTER/FISHING BOATS cruises FR0206-01, FR0206-02 and others as part of the NEP project from 2000-05-29 to 2002-08-18 (NODC Accession 0114641)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0114641 includes meteorological, biological and trawl data collected aboard the CHARTER/FISHING BOATS during cruises FR0206-01, FR0206-02, FR0208,...

  2. A report on a small collection of shrimps from the Kenya National Marine Parks at Malindi, with notes on selected species

    NARCIS (Netherlands)

    Bruce, A.J.

    1976-01-01

    The marine caridean fauna of East Africa has been little studied. Prior to World War 1, German authors produced a number of general studies but the emphasis of these papers was on crabs. Most of the carideans are reported from Zanzibar. Hilgendorf (1869) reported two unidentified species of Alpheus

  3. Impacts of animal traffic on the Brazilian Amazon parrots (Amazona species) collection of the Quinzinho de Barros Municipal Zoological Park, Brazil, 1986-2007.

    Science.gov (United States)

    Vanstreels, Ralph Eric Thijl; Teixeira, Rodrigo Hidalgo Friciello; Camargo, Luis Carlos; Nunes, Adauto Luis Veloso; Matushima, Eliana Reiko

    2010-01-01

    Eleven species of Amazon parrots (genus Amazona) are known to occur in Brazil, and nest poaching and illegal traffic pose serious conservation threats to these species. When the illegal owners realize these animals are incompatible with their expectations and lifestyle, or when the police arrests traders and owners, these trafficked animals are often considered unfit for release and sent to local zoos and captive breeders. A retrospective survey of animal and necropsy records from 1986 to 2007 was used to evaluate the impacts of animal traffic on the population composition and mortality patterns of Amazon parrots at the Quinzinho de Barros Municipal Zoological Park, Sorocaba, Brazil. Data were obtained for 374 Amazon parrots of ten Brazilian species, and there was evidence that the studied population could be split into two major groups: a majority belonging to the Amazona aestiva species and a minority belonging to the remaining species. In comparison, the animals of the first group were more frequently admitted from traffic-related origins (98 vs. 75%), had a shorter lifespan (median 301 days vs. 848 days) and a higher mortality within the first year postadmission (54 vs. 37%), were less likely to receive expensive treatments, and were more frequently housed off-exhibit. On an average, parrots were found to have a short postadmission lifespan (median 356 days), with 92.5% of the birds dying within their first five years in captivity. The paper discusses the difficult dilemmas these incoming traffic-related animals pose to zoo management and official anti-traffic policies.

  4. [List of the type species of Ceratopogonidae (Diptera, Nematocera) deposited in the Entomological Collection of Instituto Oswaldo Cruz, Rio de Janeiro, Brazil].

    Science.gov (United States)

    Felippe-Bauer, M; Oliveira Sd, S

    2001-11-01

    A list of all type specimens of the Family Ceratopogonidae, present in the Entomological Collection of Instituto Oswaldo Cruz, Rio de Janeiro, RJ, Brazil is presented. This list includes the genera Bahiahelea, Culicoides, Dasyhelea, Downeshelea, Forcipomyia, Leptoconops, Mallochohelea, Monohelea, Neobezzia, Palpomyia and Sphaerohelea.

  5. Studies on Tiger Beetles. CII. The Cicindelidae collected by Roland A. Müller in the Philippine Islands, with description of three new species (Coleoptera: Cicindelidae)

    NARCIS (Netherlands)

    Cassola, F.

    2000-01-01

    The tiger beetles are discussed which have been collected by Mr Roland A. Müller (St. Gallen, Switzerland) in the course of his several expeditions to the Philippine Islands, together with a few more specimens from other sources. Distributional new data are provided for several interesting or poorly

  6. Bioactive compounds and antifungal activity of three different seaweed speciesUlva lactuca,Sargassum tenerrimum andLaurencia obtusa collected from Okha coast, Western India

    Institute of Scientific and Technical Information of China (English)

    Megha Barot; Nirmal Kumar J.I.; Rita N. Kumar

    2016-01-01

    Objective:To evaluate bioactive compounds responsible for antifungal activity from seaweeds of Okha coast, Western India. Methods: Each species were extracted with different solvents with increasing polarity: hexane, ethyl acetate, chloroform and methanol using Soxhlet apparatus. The antifungal activity was determined by agar diffusion plate method by using fluconazole, ketoconazole and amphotericin B as standards. Gas chromatography-mass spectrometer analysis was done for identification of bioactive compounds present in crude extract. Results: The gas chromatography-mass spectrometer analysis of all the extracts revealed the presence of steroids, fatty acids and esters compounds. Among the three species, the maximum crude extract yield (53.46%) and the largest inhibition zone (36 mm) were recorded in methanol extract ofUlva lactuca, whereas the minimum crude extract yield and inhibition zone were recorded in chloroform extract of the same species as 0.5% and 10 mm, respectively. Methanol and ethyl acetate extract showed the maximum antifungal activity and the major important compounds like steroids, fatty acids and esters were detected with higher amount in all the extracts. Conclusions: The present study revealed that the different seaweed extracts showed moderate to significant antifungal activity against the strains tested as compared with the standard fungicides, and polar solvents methanol and ethyl acetate were comparatively efficient for extraction of different metabolites that are responsible for antifungal activity.

  7. Genetic diversity of Trichoderma atroviride strains collected in Poland and identification of loci useful in detection of within-species diversity.

    Science.gov (United States)

    Skoneczny, Dominik; Oskiera, Michał; Szczech, Magdalena; Bartoszewski, Grzegorz

    2015-07-01

    Molecular markers that enable monitoring of fungi in their natural environment or assist in the identification of specific strains would facilitate Trichoderma utilization, particularly as an agricultural biocontrol agent (BCA). In this study, sequence analysis of internal transcribed spacer regions 1 and 2 (ITS1 and ITS2) of the ribosomal RNA (rRNA) gene cluster, a fragment of the translation elongation factor 1-alpha (tef1) gene, and random amplified polymorphic DNA (RAPD) markers were applied to determine the genetic diversity of Trichoderma atroviride strains collected in Poland, and also in order to identify loci and PCR-based molecular markers useful in genetic variation assessment of that fungus. Although tef1 and RAPD analysis showed limited genetic diversity among T. atroviride strains collected in Poland, it was possible to distinguish major groups that clustered most of the analyzed strains. Polymorphic RAPD amplicons were cloned and sequenced, yielding sequences representing 13 T. atroviride loci. Based on these sequences, a set of PCR-based markers specific to T. atroviride was developed and examined. Three cleaved amplified polymorphic sequence (CAPS) markers could assist in distinguishing T. atroviride strains. The genomic regions identified may be useful for further exploration and development of more precise markers suitable for T. atroviride identification and monitoring, especially in environmental samples.

  8. Histopathological survey of potential biomarkers for the assessment of contaminant related biological effects in species of fish and shellfish collected from Kuwait Bay, Arabian Gulf.

    Science.gov (United States)

    Stentiford, G D; Massoud, M S; Al-Mudhhi, S; Al-Sarawi, M A; Al-Enezi, M; Lyons, B P

    2014-07-01

    The marine environment in Kuwait is dominated by Kuwait Bay, a shallow, depositional habitat vital for the breeding and propagation of marine organisms. The bay receives effluent inputs from industrial centres, ports, sewage outflows along with discharges from power and desalination plants. The major classes of pollutant discharged into the bay include petroleum hydrocarbons, metals, nutrients, cooling water and hyper-saline water. Further, the bay has been historically impacted by a deliberate release of oil and contamination with ordnance and shipwrecks during the 1991 Gulf war. With an aim to establish an integrated pollution effects monitoring programme in Kuwait, this paper describes the application of a quality assured approach to conduct a histopathology baseline survey in oriental sole (Synaptura orientalis) and the large-toothed flounder (Pseudorhombus arsius), which are two potential sentinel flatfish species present in the Arabian Gulf. Liver and gonadal histopathology revealed a range of pathologies similar to those previously observed in European and American pollution effects surveys that utilise flatfish (including pathology markers indicative of possible carcinogenesis and endocrine disruption). Further, we extended these studies to invertebrates (Jinga prawn, Metapenaeus affinis and the grooved tiger prawn, Penaeus semisulcatus) found within the Arabian Gulf. Such baseline data is essential before attempts are made to develop integrated monitoring programmes that aim to assess the health of fish and shellfish in relation to chemical contamination.

  9. 阿特拉津降解茵FM326(Arthrobacter sp.)的分离筛选、鉴定和生物学特性%Isolation, Screening and Identification of Atrazine-degrading Bacterium FM326(Arthrobacter sp.)

    Institute of Scientific and Technical Information of China (English)

    李明锐; 祖艳群; 陈建军; 湛方栋; 何永美; 李元

    2011-01-01

    采集除草剂阿特拉津污染的土壤,通过直接涂布法和富集驯化培养分离法,分别获得6株和5株能够降解阿特拉津的细菌.通过降解效率和降解动态试验,筛选到1株高效降解阿特拉津的菌株FM326,该菌株能以阿特拉津为唯一的碳源和氮源生长,培养96 h后对1000 mg· L-1阿特拉津降解效率达到97%.通过生理生化鉴定和16S rDNA序列分析,菌株FM326鉴定为节杆菌属(Arthrobacter sp.)细菌.该菌株表现出最适生长温度30~35℃,最适生长pH值5~9,好氧生长的生长特性.%The Iriazine herbicide atrazine(2-chloro-4-ethylamino-6-isopropyl-amino-s-triazine) is one of the most used pesticides. Atrazine is principally used for control of certain annual broadleaf and grass weeds, primarily in com but also in sorghum, sugarcane, and other crops. Although atrazine has relatively low persistency in soil, its remanets have been found in many higher concentrations even years after application due to widespread use. Microbial remediation is an effective and economic method to control the environment that has been polluted by atrazine. From herbicide contaminated soil, 5 atrazine degrading bacterial strains were isolated by enrichment culture, and 6 a- trazine-degrading bacterial strains were isolated by direct coating method. In the 11 strains, FM326 was screened out as the most highly efficient degradation bacteria by degradation test and could use atrazine as the sole carbon and nitrogen sources for growth. The degradation efficiency of strain FM326 was up to 97% within 96 hours while atrazine concentration was 1 000 mg-L"'. Strain FM326 was identified as Arthrobacter sp. According to physiological and biochemical tests and the phylogenic tree established by means of 16S rDNA sequencing. Moreover, strain FM326 was aerobic bacteria, its optimum temperature and pH value for growth was 30-35 t and 5~9, respectively. Strain of highly efficient degrading atrazine was found from soils

  10. Isavuconazole, micafungin, and 8 comparator antifungal agents' susceptibility profiles for common and uncommon opportunistic fungi collected in 2013: temporal analysis of antifungal drug resistance using CLSI species-specific clinical breakpoints and proposed epidemiological cutoff values.

    Science.gov (United States)

    Pfaller, M A; Rhomberg, P R; Messer, S A; Jones, R N; Castanheira, M

    2015-08-01

    The in vitro activities of isavuconazole, micafungin, and 8 comparator antifungal agents were determined for 1613 clinical isolates of fungi (1320 isolates of Candida spp., 155 of Aspergillus spp., 103 of non-Candida yeasts, and 35 non-Aspergillus molds) collected during a global survey conducted in 2013. The vast majority of the isolates of the 21 different species of Candida, with the exception of Candida glabrata (MIC90, 2 μg/mL), Candida krusei (MIC90, 1 μg/mL), and Candida guilliermondii (MIC90, 8 μg/mL), were inhibited by ≤0.25 μg/mL of isavuconazole. C. glabrata and C. krusei were largely inhibited by ≤1 μg/mL of isavuconazole. Resistance to fluconazole was seen in 0.5% of Candida albicans isolates, 11.1% of C. glabrata isolates, 2.5% of Candida parapsilosis isolates, 4.5% of Candida tropicalis isolates, and 20.0% of C. guilliermondii isolates. Resistance to the echinocandins was restricted to C. glabrata (1.3-2.1%) and C. tropicalis (0.9-1.8%). All agents except for the echinocandins were active against 69 Cryptococcus neoformans isolates, and the triazoles, including isavuconazole, were active against the other yeasts. Both the mold active triazoles as well as the echinocandins were active against 155 Aspergillus spp. isolates belonging to 10 species/species complex. In general, there was low resistance levels to the available systemically active antifungal agents in a large, contemporary (2013), global collection of molecularly characterized yeasts and molds. Resistance to azoles and echinocandins was most prominent among isolates of C. glabrata, C. tropicalis, and C. guilliermondii.

  11. Flebotomíneos (Diptera, Psychodidae na Amazônia: II. Listagem das espécies coletadas na bacia petrolífera no Rio Urucu, Amazonas, Brasil, utilizando diferentes armadilhas e iscas Sandflies (Diptera, Psychodidae in the Amazon: II. Cheek list of the species collected in the petroleum basin of the Urucu River, Amazonas, Brazil using differents traps and baits

    Directory of Open Access Journals (Sweden)

    Eloy G. Castellón

    2000-06-01

    Full Text Available A sandfly survey was carried out in 100 x 150 m patches of primary forest submitted to recent deforestation in order to determine its species composition 10-30 days after clearing. The following collecting methods were used: CDC traps whit black light; Malaise traps placed at 0.5, 1, 5 and 10m up from the the soil surface; Pennsylvania traps whit black light; Malaise traps, tree-base catches and human baits. A total of 2810 specimens of Lutzomyia França, 1924 and one species of Brumptomyia França & Parrot, 1921, were collected. In general, the predominant species were L. chagasi (Costa Lima, 1941 (25.9%, L. davisi (Root, 1934 (12.3%, L. ayrozai (Barretto & Coutinho, 1940 (9.32% and L. ubiquitalis (Mangabeira, 1942, (6.93%. The higher diversity in species was obtained with the CDC traps placed at 1 m and 5 m heights. In the human bait collections, the species of the subgenus Psychodopygus Mangabeira, 1941, predominated. Lutzomyia ubiquitalis was collected in both, Malaise and Pennsylvania traps. In the tree-base collections, L. damascenoi Mangabeira, 1941, L. dendrophyla (Mangabeira, 1942 and L. souza-castroi (Damasceno & Causey, 1944 were the predominant species. Of all collected species, five of the subgenus Lutzomyia, six of the subgenus Psychodopygus and one of genus Trichophoromyia Barretto, 1962 have been previously incriminayed as vectors of leishmaniasis disease or have been found associated with parasites of the genus Leishmania (Root, 1903.

  12. Structures of a γ-aminobutyrate (GABA) transaminase from the s-triazine-degrading organism Arthrobacter aurescens TC1 in complex with PLP and with its external aldimine PLP–GABA adduct

    Science.gov (United States)

    Bruce, Heather; Nguyen Tuan, Anh; Mangas Sánchez, Juan; Leese, Charlotte; Hopwood, Jennifer; Hyde, Ralph; Hart, Sam; Turkenburg, Johan P.; Grogan, Gideon

    2012-01-01

    Two complex structures of the γ-aminobutyrate (GABA) transaminase A1R958 from Arthrobacter aurescens TC1 are presented. The first, determined to a resolution of 2.80 Å, features the internal aldimine formed by reaction between the ∊-amino group of Lys295 and the cofactor pyridoxal phosphate (PLP); the second, determined to a resolution of 2.75 Å, features the external aldimine adduct formed between PLP and GABA in the first half-reaction. This is the first structure of a microbial GABA transaminase in complex with its natural external aldimine and reveals the molecular determinants of GABA binding in this enzyme. PMID:23027742

  13. Três espécies novas do gênero Chorisoneura (Blattellidae, Chorisoneuriinae coletadas em ninhos de Sphecidae (Hymenoptera do Estado do Acre, Brasil Three new species of the genus Chorisoneura (Blattellidae, Chorisoneuriinae collected in Sphecidae nests (Hymenoptera from Acre State, Brazil

    Directory of Open Access Journals (Sweden)

    Sonia Maria Lopes

    Full Text Available Three new species of Chorisoneura Brunner, 1865 from Acre State, Brazil collected in nests of Podium Fabricius, 1804 (Hymenoptera, Sphecidae are described. Illustrations of genitalia are presented.

  14. mRNA differential display in a microbial enrichment culture: simultaneous identification of three cyclohexanone monooxygenases from three species.

    Science.gov (United States)

    Brzostowicz, Patricia C; Walters, Dana M; Thomas, Stuart M; Nagarajan, Vasantha; Rouvière, Pierre E

    2003-01-01

    mRNA differential display has been used to identify cyclohexanone oxidation genes in a mixed microbial community derived from a wastewater bioreactor. Thirteen DNA fragments randomly amplified from the total RNA of an enrichment subculture exposed to cyclohexanone corresponded to genes predicted to be involved in the degradation of cyclohexanone. Nine of these DNA fragments are part of genes encoding three distinct Baeyer-Villiger cyclohexanone monooxygenases from three different bacterial species present in the enrichment culture. In Arthrobacter sp. strain BP2 and Rhodococcus sp. strain Phi2, the monooxygenase is part of a gene cluster that includes all the genes required for the degradation of cyclohexanone, while in Rhodococcus sp. strain Phi1 the genes surrounding the monooxygenase are not predicted to be involved in this degradation pathway but rather seem to belong to a biosynthetic pathway. Furthermore, in the case of Arthrobacter strain BP2, three other genes flanking the monooxygenase were identified by differential display, demonstrating that the repeated sampling of bacterial operons shown earlier for a pure culture (D. M. Walters, R. Russ, H. Knackmuss, and P. E. Rouvière, Gene 273:305-315, 2001) is also possible for microbial communities. The activity of the three cyclohexanone monooxygenases was confirmed and characterized following their expression in Escherichia coli.

  15. Collection Mapping.

    Science.gov (United States)

    Harbour, Denise

    2002-01-01

    Explains collection mapping for library media collections. Discusses purposes for creating collection maps, including helping with selection and weeding decisions, showing how the collection supports the curriculum, and making budget decisions; and methods of data collection, including evaluating a collaboratively taught unit with the classroom…

  16. New species of Malaysian ferns

    NARCIS (Netherlands)

    Holttum, R.E.

    1962-01-01

    The present paper includes descriptions of several new species of ferns found among recent collections from various parts of Malaysia; also two new combinations of names of species which are of interest on account of their taxonomic history.

  17. SPECIES IDENTIFICATION - LIFE STAGE, TAXONOMIC CODE, SPECIES IDENTIFICATION - SEX and species abundance pump cast data collected in the North Atlantic Ocean on the EDWIN LINK, OCEANUS and SEWARD JOHNSON cruises EL9904, EL9905 and others as part of the GB project from 1995-06-10 to 1999-05-28 (NODC Accession 0107116)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0107116 includes pump cast and biological data collected aboard the EDWIN LINK, OCEANUS and SEWARD JOHNSON during cruises EL9904, EL9905, OC303 and...

  18. SPECIES IDENTIFICATION - ORGANISM LENGTH, SPECIES IDENTIFICATION, WATER DEPTH, SPECIES IDENTIFICATION - LIFE STAGE and other fish examination data collected in the Gulf of Alaska and North Pacific Ocean on the CHARTER/FISHING BOATS cruises GP0108, GP0207-01 and others as part of the NEP project from 2001-07-18 to 2004-11-08 (NODC Accession 0115200)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0115200 includes meteorological, fish examination and biological data collected aboard the CHARTER/FISHING BOATS during cruises GP0108, GP0207-01,...

  19. ANIMALS - INDIVIDUAL - COUNTS, SPECIES IDENTIFICATION - ORGANISM LENGTH, SPECIES IDENTIFICATION - LIFE STAGE, TAXONOMIC CODE and species abundance profile and discrete sample data collected in the South Atlantic Ocean and South Pacific Ocean on the LAURENCE M. GOULD cruises LMG0104 and LMG0203 as part of the Southern Ocean GLOBEC project from 2001-05-01 to 2002-05-10 (NODC Accession 0112167)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0112167 includes profile, discrete sample and biological data collected aboard the LAURENCE M. GOULD during cruises LMG0104 and LMG0203 in the South...

  20. WATER DEPTH, SPECIES IDENTIFICATION, SPECIES IDENTIFICATION - LIFE STAGE, TAXONOMIC CODE and species abundance tows data collected in the North Pacific Ocean on the ATLANTIS, ELAKHA and other platforms cruises AR9807, AT7-21 and others as part of the NEP project from 1997-11-15 to 2003-10-23 (NODC Accession 0114259)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0114259 includes meteorological, tows and biological data collected aboard the ATLANTIS, ELAKHA, NOAA Ship McARTHUR, NEW HORIZON, UNKNOWN and WECOMA...

  1. INDIVIDUAL FISH EXAMINATION - WEIGHT, SPECIES IDENTIFICATION, SPECIES IDENTIFICATION - LIFE STAGE and SPECIES IDENTIFICATION - SEX fish examination data collected in the North Pacific Ocean on the CHARTER/FISHING BOATS cruises FR0206-01, FR0206-02 and others as part of the NEP project from 2000-05-29 to 2002-08-18 (NODC Accession 0114242)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0114242 includes fish examination and biological data collected aboard the CHARTER/FISHING BOATS during cruises FR0206-01, FR0206-02, FR0208, SE0005...

  2. BIOMASS, SPECIES IDENTIFICATION, TAXONOMIC CODE, SPECIES IDENTIFICATION - LIFE STAGE and species abundance tows data collected in the Gulf of Alaska on the ALPHA HELIX and WECOMA cruises HX201, HX203 and others as part of the NEP project from 1997-10-10 to 2004-10-07 (NODC Accession 0113896)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0113896 includes tows and biological data collected aboard the ALPHA HELIX and WECOMA during cruises HX201, HX203, HX205, HX208, HX211, HX215, HX217,...

  3. Survey of Chinese Fanniidae species collected and described by foreigners%由外国人所采集、记述的中国厕蝇科物种概况

    Institute of Scientific and Technical Information of China (English)

    王明福

    2014-01-01

    厕蝇科 Fanniidae 隶属于双翅目 Diptera、环裂亚目 Cyclorrhapha、有瓣蝇类Calyptratae的蝇总科 Muscoidea。全世界已知约360种。我国已发现151种,占世界总种数的40%以上。从1895-1975年的80年间,先后有6个国家的11位外国人在中国采集、记述厕蝇科Fanniidae昆虫共20种,其中包括我国产模式种14种。经调查,在这些种的模式标本中,有一种毁于火灾后被重新指定,一种去向不明。其余12种分别保存于德国洪堡大学自然历史博物馆,美国华盛顿国家博物馆,加拿大昆虫收藏中心,英国自然历史博物馆,日本东京自然科学博物馆等5个保存单位。文中给出了这些国外主要采集者、发表者的背景资料,所发表的每种厕蝇名录、产地、模式标本保存单位及去向,以及一些标本在国内重新发现的标本信息等。%The family Fanniidae belongs to Calyptratae of Diptera,with some 360 species worldwide so far.To date, 151 Fanniidae species were found in China,accounting for more than 40% of that known all over the world.From 1895 to 1975,there were 11 foreigners came from 6 countries collecting and recording 20 Fanniidae species in China,including 14 type species.Among the 14 type specimens,one is specified after destroyed by fire,one is missing,and the remaining 12 are saved in 5 departments,namely the Humboldt Universitat Nature Museum in Berlin of Germany,the National Museum of Natural History in Washington D.C.of United States,Montreal Insectarium of Canada,British Natural History Museum in London,and National Museum of Nature and Science in Tokyo of Japan,respectively.In addition to backgrounds of the major foreign collector,a catalogue of the 20 Fanniidae species,with type-locality,departments where the type specimens saved,and the information of some species that rediscovered in China,is presented.

  4. BIOMASS, SPECIES IDENTIFICATION, SPECIES IDENTIFICATION - LIFE STAGE and species abundance tows data collected in the North Pacific Ocean on the CHARTER/FISHING BOATS cruises FR0206-01, FR0206-02 and others as part of the NEP project from 2000-05-29 to 2002-08-17 (NODC Accession 0113950)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0113950 includes tows and biological data collected aboard the CHARTER/FISHING BOATS during cruises FR0206-01, FR0206-02, FR0208, SE0005 and SE0007 in...

  5. Collection Mapping and Collection Development.

    Science.gov (United States)

    Murray, William; And Others

    1985-01-01

    Describes the use of collection mapping to assess media collections of Aurora, Colorado, Public Schools. Case studies of elementary, middle, and high school media centers describe materials selection and weeding and identify philosophies that library collections should support school curriculum, and teacher-library media specialist cooperation in…

  6. Collecting Rocks

    Institute of Scientific and Technical Information of China (English)

    孙铮

    2007-01-01

    My hobby is collecting rocks.It is very special,isn’t it?I began to collect rocks about four years ago.I usually go hiking in the mountains,or near the river to look for rocks.When I find a rock,I pick it up and clean it with the brush and water.Then I put it into my bag.Most of the rocks I have collected are quartzite~*.They are really

  7. Áreas prioritarias para colectar germoplasma de Amaranthus en México con base en la diversidad y riqueza de especies Priority areas to collect Amaranthus germplasm in Mexico based on diversity and species richness

    Directory of Open Access Journals (Sweden)

    Eduardo Espitia Rangel

    Full Text Available Esta investigación tuvo como objetivo utilizar el Sistema de Información Geográfico, para crear mapas de índices de diversidad y riqueza de especies del género Amaranthus en México, para proyectar las mejores áreas de colecta de germoplasma. La máxima riqueza de especies se encontró en el centro occidente del Estado de México incluyendo el Distrito Federal y la costa del Pacífico, entre Jalisco y Colima, así como en Sinaloa. El índice de biodiversidad de Brillouin mostró alta diversidad en la costa del Pacífico, Sinaloa, entre los estados de Jalisco y Colima, además el centro occidente de Nuevo León, la región de la Huasteca del sureste de Tamaulipas y noreste de Veracruz, así como la zona noroeste de la Península de Yucatán. Las áreas prioritarias que se proponen son: la costa central de Sinaloa, sur de la región biogeográfica de Sonora, parte centro occidente del Estado de México incluyendo el Distrito Federal, región biogeográfica del Eje Volcánico Transmexicano y la costa del pacífico centro entre los estados de Jalisco y Colima, finalmente en la región biogeográfica de la costa pacífica mexicana.This investigation had as objective to use the Geographical Information System, to create maps of indexes of diversity and wealth of species of genus Amaranthus in Mexico, to plan the best areas of germplasm collection. The maximum wealth of species was in west center of State of Mexico including Distrito Federal and the Pacific coast, between Jalisco and Colima, as well as in Sinaloa. The Brillouin index of biodiversity showed high diversity in the Pacific coast, Sinaloa, between the states of Jalisco and Colima, also the west center of Nuevo León, the region of Huasteca of southeast of Tamaulipas and northeast of Veracruz, as well as the northwest area of Yucatán Peninsula. The priority areas proposed are: the central coast of Sinaloa, south of biogeographic region of Sonora, west center section of State of Mexico

  8. Jay's Collectibles

    Science.gov (United States)

    Cappel, James J.; Gillman, Jason R., Jr.

    2011-01-01

    There is growing interest in collectibles of many types, as indicated by the popularity of television programs such as the History Channel's "Pawn Stars" and "American Pickers" and the Public Broadcasting Service's "Antiques Road Show." The availability of online auction sites such as eBay has enabled many people to collect items of interest as a…

  9. Collective Enumeration

    Science.gov (United States)

    Bahrami, Bahador; Didino, Daniele; Frith, Chris; Butterworth, Brian; Rees, Geraint

    2013-01-01

    Many joint decisions in everyday life (e.g., Which bar is less crowded?) depend on approximate enumeration, but very little is known about the psychological characteristics of counting together. Here we systematically investigated collective approximate enumeration. Pairs of participants made individual and collective enumeration judgments in a…

  10. Temperature, salinity, nutrient, biological, species identification, and meteorological data collected by bottle and net during four cruises in the Pacific Ocean from 1982-10-10 to 1988-03-16 (NODC Accession 0000105)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Temperature profile and other data were collected using net and bottle casts in the Pacific Ocean from 10 October 1982 to 16 March 1988. Data were collected and...

  11. Temperature, salinity, and zooplankton species identification, number per sample, and wet weight per sample collected by MOCNESS net tow in the Gulf of Alaska from 13 October 1997 to 13 May 1999 (NODC Accession 0000102)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Temperature profile, zooplantkon, and other data were collected using MOCNESS net tows casts from the ALPHA HELIX in the Gulf of Alaska. Data were collected from 13...

  12. Culture collections.

    Science.gov (United States)

    Smith, David

    2012-01-01

    Culture collections no matter their size, form, or institutional objectives play a role in underpinning microbiology, supplying the resources for study, innovation, and discovery. Their basic roles include providing a mechanism for ex situ conservation of organisms; they are repositories for strains subject to publication, taking in safe, confidential, and patent deposits from researchers. They supply strains for use; therefore, the microorganisms provided must be authentic and preserved well, and any associated information must be valid and sufficient to facilitate the confirmation of their identity and to facilitate their use. The organisms must be collected in compliance with international conventions, international and national legislation and distributed to users indicating clearly the terms and conditions under which they are received and can be used. Collections are harmonizing approaches and characterizing strains to meet user needs. No one single collection can carry out this task alone, and therefore, it is important that output and strategy are coordinated to ensure culture collections deliver the basic resources and services microbiological innovation requires. This chapter describes the types of collection and how they can implement quality management systems and operate to deliver their basic functions. The links to information sources given not only provide support for the practitioners within collections but also provide guidance to users on accessing the huge resource available and how they can help ensure microbiology has the resources and a solid platform for future development.

  13. Pb2 + Tolerance and Adsorption of Arthrobacter sp. 12-1 Isolated from Lead-zinc Mine Tailing Dam%铅锌矿尾矿坝分离节杆菌12-1对Pb2+的耐受和吸附性能研究

    Institute of Scientific and Technical Information of China (English)

    陈志; 邹情雅; 潘晓鸿; 林璋; 关雄

    2014-01-01

    The extensive exploitation and usage of lead resources have caused serious environmental pollution problems currently. Bioremediation of Pb2 + contaminated water and soil environments using microbes is regarded as a promising technology due to the advantages of its cost-effective, easy operation and environmental-friendly properties. In order to understand Pb2+ biosorption characterization of microbes, an indigenous lead-resistant bacterium-Arthrobacter sp. 12-1(GenBank No. KM362724) was isolated from lead-zinc mine tailing dam, and the process and mechanism of Pb2+ biosorption by Arthrobacter sp. 12-1 were furtherly investigated in this study. Study on the growth of Arthrobacter sp. 12-1 in LB medium containing different concentration of Pb2+suggested that the highest Pb2+tolerant concentration of Arthrobacter sp. 12-1 was 800 mg/L. In water solution, 105 mg/L of Pb2+could be reduced to 2.17 mg/L by Arthrobacter sp. 12-1 within 24 h with biosorption rate of 97.93%. Microscopic investigation (atomic force microscopy and scanning electronic microscopy) combined with energy dispersive X-ray spectroscopy analysis showed that lead containing mineral was formed on the surface of cell after Pb2+sorption by Arthrobacter sp. 12-1. Further fourier transform infrared (FT- IR) analysis revealed that carboxyl, amide and phosphate groups of Arthrobacter sp. 12-1 might be involved in Pb2 + biosorption process. The results demonstrated that the Arthrobacter sp. 12-1 isolated from lead-zinc mine tailing dam had strong ability of Pb2 + resistance and biosorption, indicating an attractive prospect of practical applications in bioremediation Pb2+ contaminated water and soil environments. The present work provides much fundamental information for help in constructing feasible strategies for Pb2+bioremediation in the environment.%当前铅资源的粗放式开采和使用对环境造成了严重的污染。利用微生物修复铅污染具有费用低、易操作、环境友好等优

  14. Locals Collection

    Directory of Open Access Journals (Sweden)

    Stephen Hastings-King

    2010-03-01

    Full Text Available A locals collection is a set of parameters that are used to delimit data-mining operations. This piece uses a collection of locals from around Essex Massachusetts to shape and delimit an interrogation of post-reality in contemporary America. It explores the notion of crisis, the possibility of a crisis of empire that may or may not emerge in a media-space that does not allow crisis of empire to be mentioned and relations this maybe-crisis to the various levels of economic dysfunction that have become evident since late 2008. But mostly this piece explores ways in which particular stories about particular people do and do not link/link to these larger-scale narratives. This is the first of a potential series of locals collections that will mine the American post-real.

  15. Collecting Fever

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    The 2008 Beijing Olympics stirred up another wave of enthusiasmfor private collecting in China, a pastime that has become very popu-lar in recent years. Commemorative banknotes, stamps related to theOlympics as well as prize medals, torches, publicity pictures, badges,costumes, emblems and mascots are all hot items for collectors. Theprice of many of these has doubled or even risen tenfold. This trendseems to have confirmed that, despite China’s consumer prices con-tinuing to sky rocket and living pressure becoming tougher, it is stillpossible for the public to maintain a keen interest in collecting.

  16. Yeasts vectored by migratory birds collected in the Mediterranean island of Ustica and description of Phaffomyces usticensis f.a. sp. nov., a new species related to the cactus ecoclade.

    Science.gov (United States)

    Francesca, Nicola; Carvalho, Cláudia; Sannino, Ciro; Guerreiro, Marco A; Almeida, Pedro M; Settanni, Luca; Massa, Bruno; Sampaio, José P; Moschetti, Giancarlo

    2014-09-01

    Nine yeast species belonging to genera Candida, Cryptococcus, Phaffomyces, Rhodotorula and Wickerhamomyces, and one species of Aureobasidium genus were isolated from the cloaca of migratory birds. Candida glabrata and C. inconspicua were the species most frequently isolated and Wickerhamomyces sylviae, which has recently been described as a new species isolated from bird cloaca, was again found. The majority of isolates showed the ability to grow up to 40 °C and/or at pH 3.0, two environmental conditions typical of the digestive tract of birds. The phylogenetic analysis of the D1/D2 domain of 26S rRNA gene placed the cultures of Phaffomyces in a new lineage that differed from the closest species, P. opuntiae, by 13 nucleotide substitutions. The new species was able to grow at 40 °C and at pH 2.5, which suggests a possible adaptation to the bird cloaca. Moreover, the ability to grow in the presence of digitonin at pH 3.7 and the assimilation of ethyl acetate indicates a potential cactophilic origin. For the first time, the presence of yeasts belonging to the Phaffomyces clade in Europe and also in non-cactus environments is reported. The new species is formally described as P. usticensis sp. nov. (PYCC 6346(T) = CBS 12958(T)).

  17. COLLECTION SCORING

    Directory of Open Access Journals (Sweden)

    Skiba S. A.

    2013-11-01

    Full Text Available One of the most popular methodologies of credit indebtedness management is used by banks, financial institutions and the collection agency has been considered in this article based on the experiment. This experiment demonstrates the methods of estimations of the client’s solvency and the way to impact to debitors. The article is accompanied with explanations and conclusion

  18. Collective intentions

    NARCIS (Netherlands)

    Dunin-Keplicz, B; Verbrugge, L.C.

    2002-01-01

    In this paper the notion of collective intention in teams of agents involved in cooperative problem solving (CPS) in multiagent systems (MAS) is investigated. Starting from individual intentions, goals, and beliefs defining agents' local asocial motivational and informational attitudes, we arrive at

  19. Wastewater Collection.

    Science.gov (United States)

    Chatterjee, Samar; And Others

    1978-01-01

    Presents a literature review of wastewater collection systems and components. This review covers: (1) planning, (2) construction; (3) sewer system evaluation; (4) maintenance; (5) rehabilitation; (6) overview prevention; and (7) wastewater pumping. A list of 111 references is also presented. (HM)

  20. Collective Success or Collective Failure?

    DEFF Research Database (Denmark)

    Fayyaz, Anjum

    , industrial cluster, and corporate social responsibility literatures with the aim of explaining why collective cluster action through industry associations and/or public private partnerships succeed or fail in facilitating cluster-wide compliance with CSR standards. I then use this framework to analyze a case...... study of soccer village project to learn how various attempts at facilitating joint CSR action in the Pakistani football manufacturing have consistently failed in addressing international CSR compliance demands. I conclude that this form of collective failure – along with technological changes, lack...

  1. Cerambycidae (Coleoptera coletados à luz a 45 metros de altura, no dossel da floresta amazônica, e a descrição de quatro espécies novas Cerambycidae (Coleoptera collected with light trap at 45 meters height over an Amazon forest canopy and the description of four new species

    Directory of Open Access Journals (Sweden)

    Ubirajara R. Martins

    2006-01-01

    Full Text Available É apresentada uma relação das 69 espécies de Cerambycidae coletados a 45 m numa torre metálica de 50 m que ultrapassa a maioria das copas das árvores, num platô de terra firme, na bacia do Rio Cueiras, Estação Experimental de Silvicultura Tropical, km 14 do núcleo ZF-2 em Manaus, Amazonas, Brasil. As coletas foram realizadas de janeiro a dezembro de 2004, durante três noites de transição lunar minguante/nova de cada mês, das 18 às 6 horas. Os insetos foram capturados em um lençol iluminado com lâmpada de 250 watts, luz mista de vapor de mecúrio e lâmpada de 20 watts BLB. Foram coletados Prioninae (12 espécies, Disteniinae (uma espécie, Cerambycinae (27 espécies e Lamiinae (29 espécies. Novas espécies descritas: Physopleurus rafaeli, sp. nov. (Prioninae, Macrotomini; Oncideres tuberosa sp. nov. (Lamiinae, Onciderini, Plistonax rafaeli sp. nov. (Lamiinae, Acanthoderini e Hemiloapis mena sp. nov. (Lamiinae, Hemilophini. São apresentadas notas em Oncideres phaetusa Dillon & Dillon, 1946, chave que modifica aquela para as espécies de Physopleurus Lacordaire, 1869 e chave para as espécies de Hemiloapis Galileo & Martins, 2004.A list of 69 species of Cerambycidae collected at 45 m height in a metallic tower of 50 m height, in a "platô de terra firme", in the Cueiras River basin, "Estação Experimental de Silvicultura Tropical, km 14 do núcleo ZF-2" in Manaus, Amazonas, Brazil. The collections were carried out monthly from January to December of 2004, during three nights of lunar transition third quarter monn/new moon from 18 p.m. to 6 a.m. The insects were collected over a vertical white sheet illuminated by a 250 watts mixed light and a 20 watts black-light (BLB lamps. Were collected Prioninae (12 species, Disteniidae (one species, Cerambycinae (27 species and Lamiinae (29 species. New species described: Physopleurus rafaeli, sp. nov. (Prioninae, Macrotomini; Oncideres tuberosa sp. nov. (Lamiinae, Onciderini

  2. Flebotomíneos (Diptera, Psychodidae) na Amazônia: II. Listagem das espécies coletadas na bacia petrolífera no Rio Urucu, Amazonas, Brasil, utilizando diferentes armadilhas e iscas Sandflies (Diptera, Psychodidae) in the Amazon: II. Cheek list of the species collected in the petroleum basin of the Urucu River, Amazonas, Brazil using differents traps and baits

    OpenAIRE

    CASTELLÓN,Eloy G; Fé,Nelson F; Buhrnheim,Paulo F.; Flavio A. Fé

    2000-01-01

    A sandfly survey was carried out in 100 x 150 m patches of primary forest submitted to recent deforestation in order to determine its species composition 10-30 days after clearing. The following collecting methods were used: CDC traps whit black light; Malaise traps placed at 0.5, 1, 5 and 10m up from the the soil surface; Pennsylvania traps whit black light; Malaise traps, tree-base catches and human baits. A total of 2810 specimens of Lutzomyia França, 1924 and one species of Brumptomyia Fr...

  3. Concurrent Collections

    OpenAIRE

    Zoran Budimlić; Michael Burke; Vincent Cavé; Kathleen Knobe; Geoff Lowney; Ryan Newton; Jens Palsberg; David Peixotto; Vivek Sarkar; Frank Schlimbach; Sağnak Taşırlar

    2010-01-01

    We introduce the Concurrent Collections (CnC) programming model. CnC supports flexible combinations of task and data parallelism while retaining determinism. CnC is implicitly parallel, with the user providing high-level operations along with semantic ordering constraints that together form a CnC graph. We formally describe the execution semantics of CnC and prove that the model guarantees deterministic computation. We evaluate the performance of CnC implementations on several applications an...

  4. Concurrent Collections

    Directory of Open Access Journals (Sweden)

    Zoran Budimlić

    2010-01-01

    Full Text Available We introduce the Concurrent Collections (CnC programming model. CnC supports flexible combinations of task and data parallelism while retaining determinism. CnC is implicitly parallel, with the user providing high-level operations along with semantic ordering constraints that together form a CnC graph. We formally describe the execution semantics of CnC and prove that the model guarantees deterministic computation. We evaluate the performance of CnC implementations on several applications and show that CnC offers performance and scalability equivalent to or better than that offered by lower-level parallel programming models.

  5. Collective instabilities

    Energy Technology Data Exchange (ETDEWEB)

    K.Y. Ng

    2003-08-25

    The lecture covers mainly Sections 2.VIII and 3.VII of the book ''Accelerator Physics'' by S.Y. Lee, plus mode-coupling instabilities and chromaticity-driven head-tail instability. Besides giving more detailed derivation of many equations, simple interpretations of many collective instabilities are included with the intention that the phenomena can be understood more easily without going into too much mathematics. The notations of Lee's book as well as the e{sup jwt} convention are followed.

  6. Tetrameranthus (Annonaceae revisited including a new species

    Directory of Open Access Journals (Sweden)

    Lubbert Y.Th. Westra

    2012-04-01

    Full Text Available The taxonomic revision of the infrequently collected genus Tetrameranthus by Westra (1985 is updated. A new species is described from French Guiana and Amapá, Brazil, increasing the number of species in this genus to seven.

  7. Abundância e sazonalidade das espécies de Hydropsychidae (Insecta, Trichoptera capturadas em armadilha luminosa no Estado do Paraná, Brasil Abundance and seasonality of Hydropsychidae species (Insccta, Trichoptera collected with light trap at Paraná State, Brazil

    Directory of Open Access Journals (Sweden)

    Luciane Marinoni

    2000-03-01

    Full Text Available During one year of the project called "Survey of the Entomological Fauna in Paraná State" (henceforth PROFAUPAR, 126,340 adult specimens of Trichoptera were collected with light trap. The individuais of the family Hydropsychidae were identified and a list of species is presented. Eighteen species in four genera were identified. From this, S. (R. discalis Flint, 1972,5. (R. paramnsis Flint, 1983;S (R. spinulosa Flint, 1972 are for the first time registered for Brazil and Leptonema sparsum (Ulmer, 1905, Macrostemum hyalinum (Pictet, 1836, S. (Smicridea albosignata Ulmer, 1907; S. (Rhyacophylax dentifera Flint, 1983; S. (R. iguazu Flint, 1983; S. (R. piraya Flint, 1983; S. (R. unguiculaia Flint, 1983; S. (R. vermiculata Flint, 1978 and S. (R. weidneri Flint, 1972, for Paraná State. Discussion about the individuais abundance and species seasonality is presented.

  8. Collective drawing

    Directory of Open Access Journals (Sweden)

    Roberto Grossa

    2009-10-01

    Full Text Available This paper is referred to the experiences run at Iuav in the framework of the EU-FSE founded Courses of Collaborative Composition. In these courses we built up some work/game thought as meaning of a distance collaborative game. Rally around these games, we delivered specific knowledge and portions of technical knowledge referred to the issue of formal structure, shape grammar, and codify of “behaviours role” for a networked distance collaboration. The subject of this didactic experience is the composition and of a collective figurative opera (an image processed by the whole group of students. The themes of the image have been different in each Course: a figurative opera, a facade of an urban street or a small square. The students shared a repertory of figures coming from the break down of paintings or pictures of palaces and used the repertory as a source in order to compose the final collective opera. On the other side we worked on the shape grammar roles, experimented tools and protocols of communication, analysed the best practice in this field and defined evaluation systems.

  9. Collective motion

    Science.gov (United States)

    Vicsek, Tamás; Zafeiris, Anna

    2012-08-01

    We review the observations and the basic laws describing the essential aspects of collective motion - being one of the most common and spectacular manifestation of coordinated behavior. Our aim is to provide a balanced discussion of the various facets of this highly multidisciplinary field, including experiments, mathematical methods and models for simulations, so that readers with a variety of background could get both the basics and a broader, more detailed picture of the field. The observations we report on include systems consisting of units ranging from macromolecules through metallic rods and robots to groups of animals and people. Some emphasis is put on models that are simple and realistic enough to reproduce the numerous related observations and are useful for developing concepts for a better understanding of the complexity of systems consisting of many simultaneously moving entities. As such, these models allow the establishing of a few fundamental principles of flocking. In particular, it is demonstrated, that in spite of considerable differences, a number of deep analogies exist between equilibrium statistical physics systems and those made of self-propelled (in most cases living) units. In both cases only a few well defined macroscopic/collective states occur and the transitions between these states follow a similar scenario, involving discontinuity and algebraic divergences.

  10. Purification and characterization of β-galactosidase from Arthrobacter sp%节杆菌β-半乳糖苷酶的分离纯化及酶学性质研究

    Institute of Scientific and Technical Information of China (English)

    李珍爱; 唐蕾; 毛忠贵; 张建华; 杨瑞金

    2011-01-01

    分离纯化了由节杆菌所产的fI-半乳糖苷酶(EC 3.2.1.23)并研究了其酶学性质.以乳糖发酵培养基培养,离心收集茵体,超声破碎细胞得到粗酶液;采用硫酸铵沉淀、Phenyl-Sepharose疏水、DEAE-Sepharose离子交换和p-aminobelazyl-1-thio-β-galactopyranoside(PABTG)亲和层析方法进行酶的分离纯化,纯化倍数达到31.4;经SDS-PAGE检测分子量为30 kD.酶学性质的研究表明:该酶最适pH值为6.6,最适反应温度为37℃,pH在5.5~8.0,温度低于30℃时,相对酶活在1 h内保持在50%以上,较为稳定.以邻硝基苯-β-吡喃半乳糖苷(ONPG)为底物,米氏常数为4.64 mmol/L.%The purification and characterization of β-galactosidase (EC 3.2.1.23) produced by Arthrobacter sp. Were investigated. The bacterial cells cultured were gathered by centrifugation and disrupted by ultrasonication. The crude enzyme solution was precipitated by ammonium sulphate. Further enzyme purification was carried out by Phenyl- Sepharose, DEAE-Sepharose and p-amino-benzyl-l-thio-β-Dgalactopyranoside (PABTG) affinity chromatography. The purified β-galactosiclase was illustrated as a single band in SDS-PAGE with a purification fold of 31.4 and an apparent molecular weight of 30 kD. The maximum activity of the enzyme was determined at pH 6.6 and 37 ℃. Above 50% of the maximum activity of the enzyme was detected at pH 5.5~8.0 and 30 ℃. The Km for ONPG was 4.64 mmol/L.

  11. Invasive species

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — This is a summary of management activities and research related to invasive species on Neal Smith National Wildlife Refuge between 1992 and 2009. As part of the...

  12. The leaf surface strucure of the species from the subgenus Sedum of the genus Sedum L. (Crassulaceae DC. from the protected soil collections of A.V. Fomin Botanical Garden

    Directory of Open Access Journals (Sweden)

    Mykola V. Yatsenko

    2013-04-01

    Full Text Available By means of light and scanning electron microscopy (SEM the structure of leaf ’s epidermis of 8 species of genus SedumL. was investigated. A number of common (amphistomatics, anisocytic type of stomatal complex, strum cuticle and different signs have been revealed in the structure of the leaf ’s tissue. The results acquired on the basis of micromorphology of a leaf ’s epidermis can be used in the taxonomy of the investigated Sedumspecies.

  13. A CAPS test allowing a rapid distinction of Penicillium expansum among fungal species collected on grape berries, inferred from the sequence and secondary structure of the mitochondrial SSU-rRNA.

    Science.gov (United States)

    Garcia, Carole; La Guerche, Stéphane; Mouhamadou, Bello; Férandon, Cyril; Labarère, Jacques; Blancard, Dominique; Darriet, Philippe; Barroso, Gérard

    2006-10-01

    Penicillium expansum is a fungal species highly damageable for the postharvest conservation of numerous fruits. In vineyards, this fungus is sometimes isolated from grape berries where its presence may lead to the production of geosmin, a powerful earthy odorant, which can impair grapes and wines aromas. However, the discrimination of P. expansum from related fungi is difficult because it is based on ambiguous phenotypic characters and/or expensive and time-consuming molecular tests. In this context, the complete sequences and secondary structures of Penicillium expansum and Penicillium thomii mitochondrial SSU-rRNAs were achieved and compared with those of two other phylogenetically related Ascomycota: Penicillium chrysogenum and Emericella nidulans. The comparison has shown a high conservation in size and sequence of the core and of the variable domains (more than 80% of nt identity) of the four SSU-rRNAs, arguing for a close phylogenetic relationship between these four species of the Trichocomaceae family. Large (from 10 to 18 nt) inserted/deleted (indel) sequences were evidenced in the V1, V5 and V6 variable domains. The size variations (10 to 18 nt) of the V1 indel sequence allowed the distinction of the four species; the V5 indel (15 nt) was specifically recovered in E. nidulans; the V6 indel (16 nt), shared by the three Penicillium species, was lacking in E. nidulans. A couple of conserved primers (UI/R2) were defined to generate a PCR product containing the V1 to V5 variable domains. This product contained the two regions of the four SSU-rRNAs showing the highest rates of nt substitutions, namely the V2 variable domain and, surprisingly, a helix (H17) of the core. The H17 sequence was shown to specifically possess in P. expansum a recognition site for the ClaI restriction endonuclease. Hence, this enzyme generates a digestion pattern of the PCR product with two bands (350 bp+500 bp), specific to P. expansum and easily separable by agarose gel

  14. Biosorption of heavy metals by Pseudomonas species isolated from sugar industry.

    Science.gov (United States)

    Naz, Tayyaba; Khan, Muhammad Daud; Ahmed, Iftikhar; Rehman, Shafiq Ur; Rha, Eui Shik; Malook, Ijaz; Jamil, Muhammad

    2016-09-01

    Heavy metal-resistant bacteria can be efficient bioremediators of metals and may provide an alternative or additional method to conventional methods of metal removal. In this study, 10 bacterial isolates were isolated from soil samples of a sugar industry, located at Peshawar, Pakistan. Morphological, physiological, and biochemical characteristics of these isolates were observed. Sequence analysis (16S ribosomal RNA) revealed that isolated strains were closely related to the species belonging to the genera Pseudomonas, Arthrobacter, Exiguobacterium, Citrobacter, and Enterobacter Bacterial isolates were resistant with a minimum inhibitory concentration (500-900 ppm) to lead ion (Pb(2+)), (500-600 ppm) nickel ion (Ni(2+)), (500-800 ppm) copper ion (Cu(2+)), and (600-800 ppm) chromium ion (Cr(3+)) in solid media. Furthermore, biosorption of metals proved considerable removal of heavy metals by isolated metal-resistant strains. Pseudomonas sp. reduced 37% (Pb(2+)), 32% (Ni(2+)), 29% (Cu(2+)), and 32% (Cr(3+)) and was thus found to be most effective, whereas Enterobacter sp. reduced 19% (Pb(2+)), 7% (Ni(2+)), 14% (Cu(2+)), and 21% (Cr(3+)) and was found to be least effective. While average reduction of Pb(2+), Ni(2+), Cu(2+), and Cr(3+) by Citrobacter sp. was found to be 24%, 18%, 23%, and 27%, respectively, among recognized species. This study revealed that Pseudomonas sp. may provide a new microbial community that can be used for enhanced remediation of contaminated environment.

  15. ANIMALS - INDIVIDUAL - COUNTS, Displacement Volume, SPECIES IDENTIFICATION - LIFE STAGE, TAXONOMIC CODE and species abundance profile and discrete sample data collected in the South Atlantic Ocean and South Pacific Ocean on the NATHANIEL B. PALMER cruises NBP0103, NBP0104 and others as part of the Southern Ocean GLOBEC project from 2001-04-30 to 2002-09-11 (NODC Accession 0112171)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0112171 includes profile, discrete sample and biological data collected aboard the NATHANIEL B. PALMER during cruises NBP0103, NBP0104, NBP0202 and...

  16. SPECIES IDENTIFICATION - ORGANISM LENGTH, MARINE MAMMALS, SPECIES IDENTIFICATION, body fat and other marine mammal observation data collected in the South Atlantic Ocean and South Pacific Ocean on the LAURENCE M. GOULD cruises LMG0104, LMG0106 and others as part of the Southern Ocean GLOBEC project from 2001-05-05 to 2002-09-09 (NODC Accession 0112821)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0112821 includes marine mammal observation and biological data collected aboard the LAURENCE M. GOULD during cruises LMG0104, LMG0106, LMG0203 and...

  17. SPECIES IDENTIFICATION - ORGANISM LENGTH and SPECIES IDENTIFICATION fish examination data collected in the North Pacific Ocean on the CHARTER/FISHING BOATS cruises FR0206-01, FR0206-02 and others as part of the NEP project from 2000-05-29 to 2002-08-18 (NODC Accession 0113968)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0113968 includes biological and fish examination data collected aboard the CHARTER/FISHING BOATS during cruises FR0206-01, FR0206-02, FR0208, SE0005...

  18. BIOMASS, ANIMALS - INDIVIDUAL - COUNTS, SPECIES IDENTIFICATION, TAXONOMIC CODE and species abundance trawl data collected in the South Atlantic Ocean and South Pacific Ocean on the LAURENCE M. GOULD and NATHANIEL B. PALMER cruises LMG0104, LMG0203 and others as part of the Southern Ocean GLOBEC project from 2001-04-30 to 2002-09-08 (NODC Accession 0112166)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0112166 includes biological and trawl data collected aboard the LAURENCE M. GOULD and NATHANIEL B. PALMER during cruises LMG0104, LMG0203, NBP0104 and...

  19. SPECIES IDENTIFICATION, TAXONOMIC CODE and species abundance tows - plankton tows data collected in the North Atlantic Ocean on NOAA Ship ALBATROSS IV, ENDEAVOR and OCEANUS cruises AL9505, AL9506 and others as part of the GB project from 1995-02-11 to 1999-06-24 (NODC Accession 0105531)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0105531 includes tows - plankton tows and biological data collected aboard NOAA Ship ALBATROSS IV, ENDEAVOR and OCEANUS during cruises AL9505, AL9506,...

  20. ANIMALS - INDIVIDUAL - COUNTS, Displacement Volume, SPECIES IDENTIFICATION - LIFE STAGE, TAXONOMIC CODE and species abundance profile and discrete sample data collected in the South Atlantic Ocean and South Pacific Ocean on the LAURENCE M. GOULD cruises LMG0104 and LMG0203 as part of the Southern Ocean GLOBEC project from 2001-05-01 to 2002-05-10 (NODC Accession 0112170)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0112170 includes profile, discrete sample and biological data collected aboard the LAURENCE M. GOULD during cruises LMG0104 and LMG0203 in the South...

  1. SPECIES IDENTIFICATION - ORGANISM LENGTH, growth rate and SPECIES IDENTIFICATION - LIFE STAGE site samples data collected in the South Atlantic Ocean and South Pacific Ocean on the LAURENCE M. GOULD cruises LMG0106 and LMG0205 as part of the Southern Ocean GLOBEC project from 2001-07-28 to 2002-09-05 (NODC Accession 0112634)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0112634 includes site samples and biological data collected aboard the LAURENCE M. GOULD during cruises LMG0106 and LMG0205 in the South Atlantic...

  2. SPECIES IDENTIFICATION - DRY WEIGHT, SPECIES IDENTIFICATION - ORGANISM LENGTH, Condition factor, Carbon content of specimen and Nitrogen content of specimen site samples data collected in the South Atlantic Ocean and South Pacific Ocean on the LAURENCE M. GOULD cruises LMG0106 and LMG0205 as part of the Southern Ocean GLOBEC project from 2001-07-29 to 2002-09-09 (NODC Accession 0112563)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0112563 includes site samples and biological data collected aboard the LAURENCE M. GOULD during cruises LMG0106 and LMG0205 in the South Atlantic...

  3. PIGMENTS, SPECIES IDENTIFICATION - LIFE STAGE and SPECIES IDENTIFICATION - WET WEIGHT site samples data collected in the South Pacific Ocean on the LAURENCE M. GOULD cruises LMG0106 and LMG0205 as part of the Southern Ocean GLOBEC project from 2001-08-06 to 2002-09-09 (NODC Accession 0112635)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0112635 includes site samples and biological data collected aboard the LAURENCE M. GOULD during cruises LMG0106 and LMG0205 in the South Pacific Ocean...

  4. SPECIES IDENTIFICATION - ORGANISM LENGTH, SPECIES IDENTIFICATION and TAXONOMIC CODE tows - plankton tows data collected in the North Atlantic Ocean on NOAA Ship ALBATROSS IV, ENDEAVOR and OCEANUS cruises AL9505, AL9506 and others as part of the GB project from 1995-02-11 to 1999-06-24 (NODC Accession 0105586)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0105586 includes tows - plankton tows and biological data collected aboard NOAA Ship ALBATROSS IV, ENDEAVOR and OCEANUS during cruises AL9505, AL9506,...

  5. Evaluation of Caspofungin Susceptibility Testing by the New Vitek 2 AST-YS06 Yeast Card Using a Unique Collection of FKS Wild-Type and Hot Spot Mutant Isolates, Including the Five Most Common Candida Species

    DEFF Research Database (Denmark)

    Astvad, Karen M; Perlin, David S; Johansen, Helle K

    2013-01-01

    FKS mutant isolates associated with breakthrough or failure cases are emerging in clinical settings. Discrimination of these from wild-type (wt) isolates in a routine laboratory setting is complicated. We evaluated the ability of caspofungin MIC determination using the new Vitek 2 AST-Y06 yeast...... susceptibility card to correctly identify the fks mutants from wt isolates and compared the performance to those of the CLSI and EUCAST reference methods. A collection of 98 Candida isolates, including 31 fks hot spot mutants, were included. Performance was evaluated using the FKS genotype as the "gold standard...

  6. Serial testing from a 3-day collection period by use of the Bartonella Alphaproteobacteria growth medium platform may enhance the sensitivity of Bartonella species detection in bacteremic human patients.

    Science.gov (United States)

    Pultorak, Elizabeth L; Maggi, Ricardo G; Mascarelli, Patricia E; Breitschwerdt, Edward B

    2013-06-01

    Patients with infection from bacteremic Bartonella spp., tested using Bartonella Alphaproteobacteria growth medium (BAPGM), were retrospectively categorized into one of two groups that included those whose blood was collected once (group 1; n = 55) or three times (group 2; n = 36) within a 1-week period. Overall, 19 patients (20.8%) were PCR positive for one or more Bartonella spp. using the BAPGM platform. Seven patients (12.7%) in group 1 tested positive, and 12 patients (33.3%) in group 2 tested positive. Detection was improved when the patients were tested three times within a 1-week period (odds ratio, 3.4 [95% confidence interval, 1.2 to 9.8]; P = 0.02). Obtaining three sequential blood samples during a 1-week period should be considered a diagnostic approach when bartonellosis is suspected.

  7. Biology, speciation, and utilization of peanut species

    Science.gov (United States)

    The genus Arachis has a large number of highly diverse species. Large collections of cultivated peanut exist at multiple locations and several hundreds of wild species are maintained in germplasm banks. Many of the species have been characterized for agronomic traits, but much of the germplasm colle...

  8. ANIMALS - INDIVIDUAL - COUNTS, Displacement Volume, TAXONOMIC CODE, SPECIES IDENTIFICATION - SEX and species abundance tows data collected in the Gulf of Alaska and North Pacific Ocean on the CHARTER/FISHING BOATS cruises GP0401-01 and GP0401-02 as part of the NEP project from 2004-10-19 to 2004-11-08 (NODC Accession 0115259)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0115259 includes tows and biological data collected aboard the CHARTER/FISHING BOATS during cruises GP0401-01 and GP0401-02 in the Gulf of Alaska and...

  9. Hybrid seine for full fish community collections

    Science.gov (United States)

    McKenna, James E.; Waldt, Emily M.; Abbett, Ross; David, Anthony; Snyder, James

    2013-01-01

    Seines are simple and effective fish collection gears, but the net mesh size influences how well the catch represents the fish communities. We designed and tested a hybrid seine with a dual-mesh bag (1/4″ and 1/8″) and compared the fish assemblage collected by each mesh. The fine-mesh net retained three times as many fish and collected more species (as many as eight), including representatives of several rare species, than did the coarser mesh. The dual-mesh bag permitted us to compare both sizes and species retained by each layer and to develop species-specific abundance correction factors, which allowed comparison of catches with the coarse-mesh seine used for earlier collections. The results indicate that a hybrid seine with coarse-mesh wings and a fine-mesh bag would enhance future studies of fish communities, especially when small-bodied fishes or early life stages are the research focus.

  10. Program Management Collection. "LINCS" Resource Collection News

    Science.gov (United States)

    Literacy Information and Communication System, 2011

    2011-01-01

    This edition of "'LINCS' Resource Collection News" features the Program Management Collection, which covers the topics of Assessment, Learning Disabilities, and Program Improvement. Each month Collections News features one of the three "LINCS" (Literacy Information and Communication System) Resource Collections--Basic Skills, Program Management,…

  11. Workforce Competitiveness Collection. "LINCS" Resource Collection News

    Science.gov (United States)

    Literacy Information and Communication System, 2011

    2011-01-01

    This edition of "'LINCS' Resource Collection News" features the Workforce Competitiveness Collection, covering the topics of workforce education, English language acquisition, and technology. Each month Collections News features one of the three "LINCS" (Literacy Information and Communication System) Resource Collections--Basic…

  12. Survey protocol for invasive species

    OpenAIRE

    Menza, Charles

    2009-01-01

    This protocol was developed by the Biogeography Branch of NOAA’s Center for Coastal Monitoring and Assessment to support invasive species research by the Papahānaumokuākea Marine National Monument. The protocol’s objective is to detect Carijoa riisei and Hypnea musciformis in deepwater habitats using visual surveys by technical divers. Note: This protocol is designed to detect the presence or absence of invasive species. A distinct protocol is required to collect information on abundance ...

  13. Deep-water Holothuroidea (Echinodermata collected during the TALUD cruises off the Pacific coast of Mexico, with the description of two new species Holothuroidea (Echinodermata de mar profundo recolectadas durante las campañas TALUD frente a la costa del Pacífico mexicano, con la descripción de dos especies nuevas

    Directory of Open Access Journals (Sweden)

    Claude Massin

    2011-06-01

    Full Text Available Research cruises aboard the R/V "El Puma" were organized to collect deep-water benthic and pelagic specimens off the Pacific coast of Mexico. Seventy four specimens of Holothuroidea were collected off the Pacific coast of Mexico in depths of 377-2 200 m. The collection includes representatives of 5 of the 6 orders of Holothuroidea, 3 Dendrochirotida, 2 Dactylochirotida, 2 Aspidochirotida, 4 Elasipodida and 2 Molpadiida. Apodida were not represented. Of the 13 species recognized, 11 were identified to species level and 2, belonging to the genera Ypsilocucumis Panning, 1949, and Mitsukuriella Heding and Panning, 1954, are new to science. Five species represent new geographic or depth records. A list of Mexican localities previously and newly reported for each species are plotted on distribution maps. Environmental data, i.e., depth, temperature, and dissolved oxygen measured at the bottom level during the survey are provided. When compared with other areas of the world, the reduced number of specimens collected during this survey could be linked to the limiting effect of the Pacific Mexico Oxygen Minimum Zone. An updated checklist of species of Holothuroidea recorded below 350 m depth along the Pacific coast of Mexico is also provided totaling 31 species: 13 of these occur in the California Current area, 20 in the Gulf of California, and 15 (16 along the SW coast of Mexico.Una serie de campañas oceanográficas fue organizada a bordo del B/O "El Puma", frente a las costas del Pacífico mexicano con el propósito de recolectar ejemplares de la fauna bentónica y pelágica de aguas profundas. La recolección incluyó representantes de 5 de los 6 órdenes de Holothuroidea, i.e., 3 Dendrochirotida, 2 Dactylochirotida, 2 Aspidochirotida, 4 Elasipodida y 2 Molpadiida. Los Apodida no están representados. De las 13 especies capturadas por debajo de los 350 m de profundidad (377-2 200 m, 11 fueron identificadas hasta especie y 2 pertenecientes a los g

  14. Effect of Plant Species on Degradation of Butachlor in Rhizosphere Soils Collected from Agricultural Field%作物种类对根际土壤中丁草胺降解的影响

    Institute of Scientific and Technical Information of China (English)

    虞云龙; 杨基峰; 潘学冬; 喻景权; 杨肖娥; 樊德方

    2004-01-01

    Plant rhizosphere provides a favorable micro-ecosystem for the proliferation of soil microorganisms and therefore vegetation can promote actively microbial degradation of organic chemicals in soil. The degradation of herbicide butachlor in nonrhizosphere soil and in rhizosphere soils after vegetation of crop plants was studied. The results showed that the degradation rate of butachlor in soil was accelerated markedly after vegetation of cotton, rice, wheat, and corn plant, and the half-lives of butachlor, at concentration of 15 mg/kg, in these rhizosphere soils, were shorten by 26.6% to 57.2%, respectively, compared to those in nonrhizosphere soil. The enhancement of the degradation activity increased with species of crop plant in the order of corn, wheat, rice and cotton. Although butachlor at high concentration (50 mg/kg) showed some degree of inhibition, the degradation was also enhanced by vegetation of the crop plants. Measurement of the growth of butachlor degraders during the degradation experiment period indicated that the number of butachlor degraders in rhizosphere soils was larger than that in nonrhizosphere soil. Our results suggest that vegetation of a certain crop plants may accelerate removal of residual herbicides and avoid residual toxicity to crops.%研究了根际和非根际土壤中除草剂丁草胺的降解.结果表明,棉花、水稻、小麦和玉米的种植明显促进丁草胺的降解,15 mg/kg丁草胺的降解半衰期缩短26.6%~57.2%,这种促进作用与作物种类有关,玉米、小麦、水稻、棉花依次增强.50 mg/kg丁草胺的降解有所受抑制,但作物种植仍显示良好的促进作用.作物根际丁草胺降解菌的测定结果显示,根际土壤中丁草胺降解菌的数量大于非根际土壤,作物种植对丁草胺降解的促进作用源于根际丰富的降解菌.

  15. Cluster Analysis of Ranunculus Species

    Directory of Open Access Journals (Sweden)

    SURANTO

    2002-01-01

    Full Text Available The aim of the experiment was to examine whether the morphological characters of eleven species of Ranunculus collected from a number of populations were in agreement with the genetic data (isozyme. The method used in this study was polyacrilamide gel electrophoresis using peroxides, estarase, malate dehydrogenase, and acid phosphatase enzymes. The results showed that cluster analysis based on isozyme data have given a good support to classification of eleven species based on morphological groups. This study concluded that in certain species each morphological variation was profit to be genetically based.

  16. Two new species of Lachesilla in species groups riegeli and forcepeta (Psocodea, 'Psocoptera', Lachesillidae, from the state of Bahia, Brazil

    Directory of Open Access Journals (Sweden)

    Alfonso N. García Aldrete

    2014-03-01

    Full Text Available Two new species of Lachesilla in species groups riegeli and forcepeta (Psocodea, 'Psocoptera', Lachesillidae, from the state of Bahia, Brazil.Two new species of Lachesilla from the Brazilian state of Bahia are here described and illustrated. Lachesilla cladoclaspers sp. nov., in species group riegeli, was collected in the Chapada Diamantina, Lachesilla nilopecanhensis sp. nov., in species group forcepeta, was collected in Nilo Peçanha, southern Bahia.

  17. 75 FR 66119 - Proposed Information Collection; International Conservation Grant Programs

    Science.gov (United States)

    2010-10-27

    ... Species, and Amphibians in Decline). Currently, information that we collect for Critically Endangered... collection for Amphibians in Decline grants is approved under OMB Control No. 1018-0144, which...

  18. 发酵产菊糖果糖转移酶的培养基设计及菌体生长动力学研究%Optimization of Inulin Fructotransferase-producing Medium and Determination of Cell Growth Kinetic Parameter for Arthrobacter ureafaciens SK-8.001

    Institute of Scientific and Technical Information of China (English)

    卢峥嵘; 赵萌; 沐万孟; 张涛; 江波

    2009-01-01

    In this paper,the optimal inulin fructotransferase-producing medium and fermentation kinetic parameters of Arthrobacter ureafaciens SK -8.001 were studied. The recipes of optimal media included 2. 5% inulin,0. 3% NaN0_3,0. 1% yeast extract,0. 01% MgSO_4,0. 04% KH_2P0_4,0. 001% FeSO_4·7H_2O. The maximum enzyme activity reached 19. 85 U/mL,which was 2. 04 fold higher than in initial media. The study on the fermentation process in the optimal media suggested the right time to add inducers into the media was 12 h or 66th hours during the fermentation. The cell growth kinetic model for SK-8.001 in batch fermentation was X (t) = 9. 356 05/ [1 + exp~((4.4222-0.1102l)) ].%对1株产菊糖果糖转移酶(inulin fructotransferase)的金黄色节杆菌(Arthrobacter ureafaciens)SK-8.001的产酶培养基进行了优化,同时对其在分批发酵过程中培养基组分变化和菌体生长动力学进行了研究.所得到的改进型产酶培养基配方为25 g/L菊糖,3 g/L NaNO_3,1g/L酵母膏,0.1 g/L MgSO_4,0.4g/L KH_2PO_4,0.01g/LFeSO_4·7H_2O.在此培养基中的最高酶活达到19.85 U/mL,较初始培养基提高了2.04倍.对在此培养基中Sk-8.001的发酵过程研究发现发酵12 h和66 h是较为理想的诱导物添加时刻.得到SK-8.001在优化培养基中分批培养的菌体生长动力学模型为:X(t)=9.356 05/[1+exp~((4.4222-0.1102:))].

  19. The Effects of Heterologous Expression of groEL from Arthrobacter simplex on the Resistance Performance of Escherichia coli%简单节杆菌groEL基因表达对大肠杆菌抗逆性能的影响

    Institute of Scientific and Technical Information of China (English)

    王艳霞; 王红玲; 王敏; 骆健美

    2016-01-01

    Arthrobacter simplex,a strain with steroid C1,2 dehydrogenation ability,has been widely used in the steroid industry, usually adding ethanol in the transforming system may catalyze the dissolution of hydrophobic substrates. Our prior work by LC-MS/MS and bioinformatics analysis found that heat shock protein(HSP)GroEL was closely correlated to the cell adaptive behavior under ethanol stress condition. Based on this concept,groEL gene was cloned by PCR while usingA. simplexTCCC 11037 genome as a template. The results showed that the homologies of nucleotide and amino acid sequence of GroEL in the strain were the highest with that fromNocardioides sp. JS614 by the ratio of 89% and 95%,respectively. Then its heterologous expression was conducted in Escherichia coli BL21(DE3)with the vector pET-22b (+),and the results showed that the recombinant strain presented the significant increase on the survival performance under the shock condition with high-concentration of methanol,hypertonicity and superacid,as well as the growth performance under the proper stresses of them. The study was the first report on the cloning and expression of genegroEL fromA. simplex,and also provided fundamental data for exploring the biological function of HSP protein GroEL from A. simplex.%以简单节杆菌(Arthrobacter simplex)TCCC 11037基因组为模板,通过PCR方法进行groEL基因克隆,结果表明,该菌株中GroEL的核苷酸和氨基酸序列与Nocardioidessp. JS614来源的GroEL同源性最高,分别为89%和95%。通过pET-22b(+)将其在大肠杆菌BL21(DE3)中进行异源表达,结果表明,重组菌株在甲醇、高渗和强酸这3种压力高浓度冲击条件下的存活能力和适当压力条件下的生长性能均明显提高。

  20. Five new species of Baeus Haliday, 1833 (Hymenoptera: Platygastroidea: Scelioninae) from Brazil with an updated key to Neotropical species.

    Science.gov (United States)

    Araujo, Rodrigo De Oliveira; Vivallo, Felipe; Araujo, Cristina De Oliveira

    2013-01-01

    The species of the genus Baeus are small endoparasitoids wasps that attack spiders' egg sacs. Although there are data of occurrence in several biogeographical regions, their distribution records are scarce, especially due to their small size, mak- ing difficult to collect them in natural environments. In this paper, five new species of Baeus are described as results of collections made in southeastern Brazil: Baeus fluminensis new species, B. itatiaiaensis new species, B. leucophthalmus new species, B. melanocephalus new species and B. morenus new species. An updated key to the known Neotropical spe- cies of the genus is also provided.

  1. Leaf Collection Posting Log

    Data.gov (United States)

    Montgomery County of Maryland — This dataset contains leaf collection dates for area and subarea where leaf collection service is provided by Montgomery County Department of Transportation. Update...

  2. Espécies de flebotomíneos (Diptera, Psychodidae coletadas em ambiente urbano em municípios com transmissão de Leishmaniose Visceral do Estado de Mato Grosso do Sul, Brasil Species of phlebotomines (Diptera, Psychodidae collected in urban municipalities with transmission of visceral leishmaniasis in Mato Grosso do Sul State, Brazil

    Directory of Open Access Journals (Sweden)

    Paulo Silva de Almeida

    2010-06-01

    providing data for the leishmaniasis control programmes. The collections were undertaken with automatic light traps, installed monthly on three consecutive nights, from 06:00 pm to 6:00 am over a two-year period. A total of 34,799 sand fly specimens, belonging to 36 species, were collected. Lutzomyia longipalpis (Lutz & Neiva, 1912 and Nyssomyia whitmani (Antunes, 1939 were the most widely dispersed species, the former was found in 16 and the latter in 15 out of the 18 municipalities investigated, however, Lu. longipalpis was predominant in all the municipalities and Ny. whitmani was not predominant in any of them. Corumbá contributed with 40.92% of the specimens and Lutzomyia cruzi (Mangabeira, 1938 with 92.50% of the specimens captured there. It is suggested that the species of Lutzomyia genus and Ny. whitmani may be involved in the transmission of leishmaniasis in Mato Grosso do Sul state.

  3. Chromosome numbers of some Angiospermae collected in Cameroun and the Ivory Coast

    NARCIS (Netherlands)

    Gadella, Th.W.J.

    1969-01-01

    The chromosome numbers of 16 species of Angiosperms, collected in Cameroun and the Ivory Coast, were determined. The numbers given for 14 species are new, in the remaining species the results of other authors could be confirmed.

  4. Espécies selvagens do gênero arachis: observações sôbre os exemplares da coleção da seção de citologia Wild species of Arachis: observations on some plants in the cytology department collection

    Directory of Open Access Journals (Sweden)

    Cândida H. T. M. Conagin

    1962-01-01

    Full Text Available Uma coleção viva de espécies selvagens de amendoim (Arachis spp. vem sendo há alguns anos mantida pela Seção de Citologia para realizar pesquisas com êsse gênero e colaborar com a Seção de Oleaginosas no melhoramento das variedades econômicas. Neste trabalho é apresentada a descrição de dez espécies cuja classificação botânica é conhecida. Algumas como Arachis villcsulicarpa, A. diogoi e A. monticola são de porte ereto. Arachis repens, A. glabrata, A. hagenbeckii e A. villosa são rasteiros; é também rasteiro uma espécie ainda não identificado, de número V. 360. A presente descrição é apenas um subsidio para melhor conhecimento das espécies. Do mesmo modo que foi feito poro as variedades do amendoim cultivado, Arachis hypogaea L. (3, também para as espécies selvagens foram estudados as principais características dos exemplares da coleção, procurando delimitar cada grupo de plantas, considerando as condições locais de Campinas.Since some years ago the Cytology Departament maintains a plant collection of wild species of Arachis with which many basic researches have been conducted. This paper presents the description of ten species which are already botanically classified. Some are erect as Arachis villosalicarpa, A. diogoi and A. monticola; others are of the runner type as Arachis repens, A. glabrata, A. hagenbekii and A. villosa. A not yet identified species, called V. 360, is of the runner type too. The present description contributes to a better knowledge of the species in the some way as it has been done before for the commercial varieties of Arachis hypogaea L. The principal characteristics of the wild plants and the measurements of their parts hove been listed here, looking for a delimitation of each group of plants far the local conditions of Campinas.

  5. A new species of Aulacaspis Cockerell, 1893 from China with a key to Chinese species (Hemiptera, Coccoidea, Diaspididae)

    Science.gov (United States)

    Wei, Jiufeng; Jing, Xiaopeng; Zhang, Hufang

    2016-01-01

    Abstract A new species of armored scale insect, Aulacaspis zunyiensis sp. n. is described and illustrated from collections on cycads in China. A key to the Aulacaspis species known from China is provided. PMID:27829787

  6. A new species of Pseudaulacaspis MacGillivray, 1921 from China (Hemiptera, Coccoidea, Diaspididae with a key to Chinese species

    Directory of Open Access Journals (Sweden)

    Jiu-Feng Wei

    2012-07-01

    Full Text Available A new species of armored scale, Pseudaulacaspis zhenyuanensis Wei & Feng, sp. n. is described and illustrated from specimens collected on Spermadictyon suaveolens in China. A key to armored scale species known from China is provided.

  7. A new species of Aulacaspis Cockerell, 1893 from China with a key to Chinese species (Hemiptera, Coccoidea, Diaspididae

    Directory of Open Access Journals (Sweden)

    Jiufeng Wei

    2016-09-01

    Full Text Available A new species of armored scale insect, Aulacaspis zunyiensis sp. n. is described and illustrated from collections on cycads in China. A key to the Aulacaspis species known from China is provided.

  8. Innovation in the collective brain

    Science.gov (United States)

    Muthukrishna, Michael; Henrich, Joseph

    2016-01-01

    Innovation is often assumed to be the work of a talented few, whose products are passed on to the masses. Here, we argue that innovations are instead an emergent property of our species' cultural learning abilities, applied within our societies and social networks. Our societies and social networks act as collective brains. We outline how many human brains, which evolved primarily for the acquisition of culture, together beget a collective brain. Within these collective brains, the three main sources of innovation are serendipity, recombination and incremental improvement. We argue that rates of innovation are heavily influenced by (i) sociality, (ii) transmission fidelity, and (iii) cultural variance. We discuss some of the forces that affect these factors. These factors can also shape each other. For example, we provide preliminary evidence that transmission efficiency is affected by sociality—languages with more speakers are more efficient. We argue that collective brains can make each of their constituent cultural brains more innovative. This perspective sheds light on traits, such as IQ, that have been implicated in innovation. A collective brain perspective can help us understand otherwise puzzling findings in the IQ literature, including group differences, heritability differences and the dramatic increase in IQ test scores over time. PMID:26926282

  9. Innovation in the collective brain.

    Science.gov (United States)

    Muthukrishna, Michael; Henrich, Joseph

    2016-03-19

    Innovation is often assumed to be the work of a talented few, whose products are passed on to the masses. Here, we argue that innovations are instead an emergent property of our species' cultural learning abilities, applied within our societies and social networks. Our societies and social networks act as collective brains. We outline how many human brains, which evolved primarily for the acquisition of culture, together beget a collective brain. Within these collective brains, the three main sources of innovation are serendipity, recombination and incremental improvement. We argue that rates of innovation are heavily influenced by (i) sociality, (ii) transmission fidelity, and (iii) cultural variance. We discuss some of the forces that affect these factors. These factors can also shape each other. For example, we provide preliminary evidence that transmission efficiency is affected by sociality--languages with more speakers are more efficient. We argue that collective brains can make each of their constituent cultural brains more innovative. This perspective sheds light on traits, such as IQ, that have been implicated in innovation. A collective brain perspective can help us understand otherwise puzzling findings in the IQ literature, including group differences, heritability differences and the dramatic increase in IQ test scores over time.

  10. Finessing atlas data for species distribution models

    NARCIS (Netherlands)

    Niamir, A.; Skidmore, A.K.; Toxopeus, A.G.; Munoz, A.R.; Real, R.

    2011-01-01

    Aim The spatial resolution of species atlases and therefore resulting model predictions are often too coarse for local applications. Collecting distribution data at a finer resolution for large numbers of species requires a comprehensive sampling effort, making it impractical and expensive. This stu

  11. Multiplexed microsatellite markers for seven Metarhizium species

    Science.gov (United States)

    Cross-species transferability of 41 previously published simple sequence repeat (SSR) markers was assessed for 11 species of the entomopathogenic fungus Metarhizium. A collection of 65 Metarhizium isolates including all 54 used in a recent phylogenetic revision of the genus were characterized. Betwe...

  12. Species discrimination from a hyperspectral perspective

    OpenAIRE

    Sobhan, I.

    2007-01-01

    Sustainable management of natural ecosystems requires comprehensive information on species distribution and composition. Remote sensing has the potential to improve the collection of information on species composition. Compared to other vegetation attributes plant species so far remained a difficult attribute to detect with remote sensing. Broad band remote sensing sensors, which have been used extensively for mapping of plant communities, are however not sufficiently sensitive to allow discr...

  13. Electronic collection management

    CERN Document Server

    Mcginnis, Suzan D

    2013-01-01

    Build and manage your collection of digital resources with these successful strategies! This comprehensive volume is a practical guide to the art and science of acquiring and organizing electronic resources. The collections discussed here range in size from small college libraries to large research libraries, but all are facing similar problems: shrinking budgets, increasing demands, and rapidly shifting formats. Electronic Collection Management offers new ideas for coping with these issues. Bringing together diverse aspects of collection development, Electronic Collection

  14. The Jean Gutierrez spider mite collection

    Directory of Open Access Journals (Sweden)

    Alain Migeon

    2015-03-01

    Full Text Available The family Tetranychidae (spider mites currently comprises 1,275 species and represents one of the most important agricultural pest families among the Acari with approximately one hundred pest species, ten of which considered major pests. The dataset presented in this document includes all the identified spider mites composing the Jean Gutierrez Collection hosted at the CBGP (Montferrier-sur-Lez, France, gathered from 1963 to 1999 during his career at the Institut de Recherche pour le Développement (IRD. It consists of 5,262 specimens corresponding to 1,564 occurrences (combination species/host plant/date/location of 175 species. Most specimens were collected in Madagascar and other islands of the Western Indian Ocean, New Caledonia and other islands of the South Pacific and Papuasia. The dataset constitutes today the most important one available on Tetranychidae worldwide.

  15. The Jean Gutierrez spider mite collection.

    Science.gov (United States)

    Migeon, Alain

    2015-01-01

    The family Tetranychidae (spider mites) currently comprises 1,275 species and represents one of the most important agricultural pest families among the Acari with approximately one hundred pest species, ten of which considered major pests. The dataset presented in this document includes all the identified spider mites composing the Jean Gutierrez Collection hosted at the CBGP (Montferrier-sur-Lez, France), gathered from 1963 to 1999 during his career at the Institut de Recherche pour le Développement (IRD). It consists of 5,262 specimens corresponding to 1,564 occurrences (combination species/host plant/date/location) of 175 species. Most specimens were collected in Madagascar and other islands of the Western Indian Ocean, New Caledonia and other islands of the South Pacific and Papuasia. The dataset constitutes today the most important one available on Tetranychidae worldwide.

  16. Study of the inorganic constituents in different species of Casearia medicinal plant collected in distinct regions of the Atlantic Forest, SP State, Brazil; Estudo sobre os constituintes inorganicos presentes em diferentes especies da planta medicinal do genero Casearia coletadas em regioes distintas da Mata Atlantica, SP

    Energy Technology Data Exchange (ETDEWEB)

    Yamashita, Celina Izumi

    2006-07-01

    The use of medicinal plants in the treatment of diseases has increased significantly in the last years, as has research concerning chemical characterization of these plants. In this study, inorganic constituents were determined in leaves and in extracts from three medicinal plant species of the Casearia genus (C. sylvestris, C. decandra and C. obliqua) collected in distinct regions of the Atlantic Forest, SP. The elemental compositions of the soils in which these plants were grown were also determined. Traditionally, these plants are used due to their antiinflammatory, antiacid, antiseptic and cicatrizing properties. The antiulcer and the antitumor activities of the Casearia genus and its capacity to neutralize snake and bee venoms, have also been scientifically confirmed. The analytical methodology used was neutron activation analysis. Long and short irradiation periods of the samples and the standards were carried out at IPEN's IEA-R1 nuclear research reactor. In the leaf K was found at the percentage levels, Ca, Cl, Mg and Na at mg g{sup -1} levels and the elements Br, Fe, Mn, Rb and Zn at the {mu}g g{sup -1} levels. As, Co, Cr, Cs, La, Sb, Sc and Se at the ng g{sup -1} levels. Results obtained in the extracts indicated that the same elements present in the leaves are also found in their extracts. The comparison between the inorganic composition of Casearia sylvestris leaves collected from three different regions of the Atlantic Forest showed that the elemental concentrations in the plants leaves varied depending on the place where they were grown. Different Casearia species cultivated in a same region presented similar elemental compositions. Based on these findings it can be concluded that the studies about the pharmacological effect of Casearia genus plants grown in different types of soil are of great importance. The quality of the obtained results was assured by the analyses of the certified reference materials NIST 1573a Tomato Leaves, NIST 1515 Apple

  17. Herbaria are a major frontier for species discovery.

    Science.gov (United States)

    Bebber, Daniel P; Carine, Mark A; Wood, John R I; Wortley, Alexandra H; Harris, David J; Prance, Ghillean T; Davidse, Gerrit; Paige, Jay; Pennington, Terry D; Robson, Norman K B; Scotland, Robert W

    2010-12-21

    Despite the importance of species discovery, the processes including collecting, recognizing, and describing new species are poorly understood. Data are presented for flowering plants, measuring quantitatively the lag between the date a specimen of a new species was collected for the first time and when it was subsequently described and published. The data from our sample of new species published between 1970 and 2010 show that only 16% were described within five years of being collected for the first time. The description of the remaining 84% involved much older specimens, with nearly one-quarter of new species descriptions involving specimens >50 y old. Extrapolation of these results suggest that, of the estimated 70,000 species still to be described, more than half already have been collected and are stored in herbaria. Effort, funding, and research focus should, therefore, be directed as much to examining extant herbarium material as collecting new material in the field.

  18. Towards modern petrological collections

    NARCIS (Netherlands)

    Kriegsman, L.M.

    2004-01-01

    Petrological collections result from sampling for academic research, for aesthetic or commercial reasons, and to document natural diversity. Selection criteria for reducing and enhancing collections include adequate documentation, potential for future use, information density, time and money investe

  19. New species of Eibesfeldtphora Disney (Diptera: Phoridae) and a new key to the genus.

    Science.gov (United States)

    Uribe, Soraya; Brown, Brian V; Bragança, Marcos A L; Queiroz, Jarbas M; Nogueira, Carlos A

    2014-06-10

    Two new species of parasitoids, Eibesfeldtphora trifurcata and Eibesfeldtphora inornata, are described. Both species were collected in Brazil. A new key is provided and illustrated for the twenty one known species.

  20. Sarcophyton andamanensis, a new species of soft coral from Andaman Islands

    Digital Repository Service at National Institute of Oceanography (India)

    Jayasree, V.; Bhat, K.L.; Parulekar, A.H.

    A systematic and morphological description of a new species of soft coral, Sorcophyton andamanensis collected from Andaman Islands is given. A comparative study made between the new species of sarcophyton and other related species along with its...

  1. Report on the Haleciidae and Plumularioidea (Cnidaria, Hydrozoa) collected by the French SEAMOUNT 1 expedition

    NARCIS (Netherlands)

    Ramil, F.; Vervoort, W.; Ansín, J.A.

    1998-01-01

    The study of a part of the material collected by the French oceanographic expedition "SEAMOUNT 1" made it possible to identify 21 species and one subspecies of hydroids of the families Haleciidae (4 species), Aglaopheniidae (7 species), Halopterididae (3 species), Kirchenpaueriidae (2 species and on

  2. Calibrating collective commitments

    NARCIS (Netherlands)

    Dunin-Keplicz, B; Verbrugge, R; Marik,; Muller, J; Pechoucek, M

    2003-01-01

    In this paper we aim to formally model the strongest motivational attitude occurring in teamwork, collective commitment. First, building on our previous work, a logical framework is sketched in which social commitments and collective intentions are formalized. Then, different versions of collective

  3. Two new species of mealybugs (Hemiptera, Coccoidea, Pseudococcidae from Iran

    Directory of Open Access Journals (Sweden)

    Masumeh Moghaddam

    2010-04-01

    Full Text Available Polystomophora arakensis Moghaddam and Phenacoccus salviacus Moghaddam are described and illustrated in detail from Iran. The species P. arakensis was collected from the roots of Atraphaxis sp. (Family: Polygonaceae and P. salviacus was collected from the leaves of Salvia bracteata (Family: Labiatae. The genera Phenacoccus and Polystomophora are briefly reviewed and a key to the Iranian species of Phenacoccus is provided.

  4. Coryneform bacteria in human semen: inter-assay variability in species composition detection and biofilm production ability

    Directory of Open Access Journals (Sweden)

    Silver Türk

    2014-02-01

    Full Text Available Background: Coryneform bacteria constitute an important segment of male urogenital microbiota. They have been generally considered as saprophytes, although some species have been associated with prostatitis as well. At the same time, biofilm infections have been suspected as a cause of prostatitis. Objective: To identify a set of coryneform bacteria isolated from semen of either healthy men or prostatitis patients applying different methods to reveal inter-assay variability and to determine their ability of adhesion and biofilm production. Design: Coryneform bacteria were identified by API Coryne 2.0 biochemical identification system and 16S rDNA sequencing using different primer sets. Quantitative assessment of biofilm production was performed using crystal violet binding assay method. Results: The most common species were Corynebacterium seminale, C. minutissimum, and Dermabacter hominis. Altogether 14 species and related genera were found. We observed the best inter-assay agreement when identifying C. seminale. Biofilm was observed in 7 out of 24 strains. The biofilm-producing strains belonged to Arthrobacter cumminsii, Dermabacter hominis, C. minutissimum, and Actinomyces neuii. No differences were found between the strains originating from prostatitis patients and healthy men. Dermabacter hominis strains were more potent biofilm producers than C. seminale strains (p=0.048. Conclusions: We can conclude that a wide variety of coryneform bacteria can be found from the male genital tract, although their exact identification is problematic due to insufficient representation in databases. Nearly one third of the strains are able to form biofilm that may give them an advantage for surviving several host- and treatment-related conditions.

  5. Forest Seed Collection, Processing,and Testing

    DEFF Research Database (Denmark)

    Schmidt, Lars Holger

    2016-01-01

    apply to different species, seed types, situations, and purposes. Yet the collection and processing toolbox contains a number of “standard” methods for most of these groups. Records and documentation help in evaluating “best practice” for future method improvement, and it helps in linking offspring...

  6. Isolation, Characterization and Identification of Thiram-degrading Microorganisms from Soil Enrichment Cultures

    OpenAIRE

    ŞAHİN, Nurettin

    2000-01-01

    Mixed microbial cultures were obtained by enrichment from soil samples collected from the Gediz basin. A number of species of bacteria and fungi were isolated and partially characterized from enrichment clutures containing the fungicide thiram. According to their responses in morphological and biochemical tests fungi were identified as Aspergillus niger, A. flavus and Penicilium steckii. Bacterial isolates were assigned to the genera: Bacillus, Arthrobacter, Moraxella-like Acinetobacter a...

  7. Alien species on the coasts of Turkey

    Directory of Open Access Journals (Sweden)

    M.E. CINAR

    2012-12-01

    Full Text Available The compilation of data on alien species reported from the Turkish coasts yielded a total of 263 species belonging to 11 systematic groups, of which Mollusca had the highest number of species (85 species, followed by Crustacea (51, fishes (43 and phytobenthos (39. The Black Sea is represented by a total of 20 alien species, the Sea of Marmara by 48 species, the Aegean Sea by 98 species and the Levantine Sea by 202 species. The majority of aliens found in the Black Sea and the Sea of Marmara were transported via shipping, whereas the Levantine coast is extensively subjected to Lessepsian migration. Benthic habitats (soft and hard substrata comprise 76% of the total alien species and the pelagic environment is inhabited by thirty-nine species. Almost 50% of aliens collected from the Turkish coasts were found only at 0-10 m depth. Eight species occur at depths deeper than 100 m. The impacts of aliens on the benthic and pelagic ecosystems are presented.

  8. 球形节杆菌C224分批发酵2-酮基-D-葡萄糖酸的条件优化及其动力学模型的构建%Optimization of 2-keto-D-gluconic acid batch fermentation by Arthrobacter globiformis C224 and its kinetics

    Institute of Scientific and Technical Information of China (English)

    孙文敬; 高培玲; 魏转; 崔凤杰; 周延政; 滕文华; 刘敬泽

    2013-01-01

    In the present study,the operation parameters including aeration rate and initial glucose concentration during 50-L batch fermentation were optimized to increase the 2-keto-D-gluconic acid (2KGA) productivity from rice starch hydrolysate by Arthrobacter globiformis C224.The kinetic models for describing the cell growth,2KGA production and glucose consumption were proposed by using Logistic/Luedeking-Piret equations and mass balance calculation.Results showed that the 2KGA yield decreased slightly and its productivity lowered significantly when the aeration rate was below 1.5 v · v-1 · m-1 The initial glucose concentrations varying from 120.0 g/L to 180.0 g/L were optimal.Under the optimized conditions,the productivities and yields reached to 6.36 ~6.54 g/(L · h) and 0.96 ~0.97 g/g,respectively.Those proposed models could fit the predictive values well with the obtained experimental data.The determination coefficients (R2) of all models were over 0.95,which also indicated that theses models could elucidate the 2KGA metabolic characteristics of Arthrobacter globiformis C224.%通过优化发酵条件,提高球形节杆菌C224菌株利用大米淀粉水解糖分批发酵2-酮基-D-葡萄糖酸的生产强度,并在此基础上构建其发酵动力学模型.在50 L的发酵罐上考察了通气量与葡萄耱浓度对2-酮基-D-葡萄糖酸发酵的影响,并基于Logistic方程、Luedeking-Piret方程和物料平衡计算分别构建了菌体生长、产物形成和底物消耗的动力学模型.研究结果表明,通气量低于1.5 v·v-1·m-1时,发酵生产强度明显减小,糖酸转化率有所降低;发酵培养基中的葡萄糖浓度以120.0~180.0 g/L为宜,过高或过低对生产强度和糖酸转化率均有不利影响.在适宜的发酵条件下,球形节杆菌C224菌株分批发酵生产2-酮基-D-葡萄糖酸的生产强度达6.36~6.54 g/(L h),糖酸转化率为0.96 ~ 0.97 g/g.所构建动力学模型的计算值与实验值拟合效果

  9. Agroforestry Species Switchboard

    DEFF Research Database (Denmark)

    Kindt, R.; John, I.; Ordonez, J.;

    2016-01-01

    The current version of the Agroforestry Species Switchboard documents the presence of a total of 26,135 plant species (33,813 species including synonyms) across 19 web-based databases. When available, hyperlinks to information on the selected species in particular databases are provided. In total...

  10. A new species of Callistethus from Mexico (Coleoptera, Melolonthidae, Rutelinae)

    OpenAIRE

    Andrés Ramírez-Ponce; Miguel Ángel Morón

    2012-01-01

    Callistethus tlapanecus, a new species collected in pine forest located at 2160 meters of altitude in eastern mountains of the state of Guerrero, Mexico is described. The morphological characters that distinguish it from other Mexican and Central American species are discussed. The diagnostic characters are illustrated, and a key to Mexican species of Callistethus is also included.

  11. A new species of Callistethus from Mexico (Coleoptera, Melolonthidae, Rutelinae

    Directory of Open Access Journals (Sweden)

    Andrés Ramírez-Ponce

    2012-06-01

    Full Text Available Callistethus tlapanecus, a new species collected in pine forest located at 2160 meters of altitude in eastern mountains of the state of Guerrero, Mexico is described. The morphological characters that distinguish it from other Mexican and Central American species are discussed. The diagnostic characters are illustrated, and a key to Mexican species of Callistethus is also included.

  12. Dianthus aticii, a new species from Turkey (Caryophyllaceae

    Directory of Open Access Journals (Sweden)

    Ergin Hamzaoğlu

    2015-04-01

    Full Text Available During the taxonomic revision of the Turkish Dianthus species, specimens collected from Bilecik, Seben (Bolu, and Nallıhan (Ankara were discovered that represent a new species. Its description, images, chorology, ecology, and threat category are provided. It was compared with a closely related species, D. zonatus, and differences are based on its general morphology and seed micromorphology.

  13. Collecting Taxes Database

    Data.gov (United States)

    US Agency for International Development — The Collecting Taxes Database contains performance and structural indicators about national tax systems. The database contains quantitative revenue performance...

  14. Molecular characterization of Eimeria species in macropods.

    Science.gov (United States)

    Yang, Rongchang; Fenwick, Stan; Potter, Abbey; Elliot, Aileen; Power, Michelle; Beveridge, Ian; Ryan, Una

    2012-10-01

    A total of 597 faecal samples were collected from western grey kangaroos (Macropus fuliginosus), Euros (M. robustus), red kangaroos (M. rufus) in Western Australia and Eastern Grey Kangaroos (M. giganteus) from Victoria and screened for the presence of Eimeria by PCR at the 18S ribosomal RNA (rRNA) locus. The overall prevalence was 24.3% (145/597). At the 18S rRNA locus, sequences were obtained for 25 of the 145 positives. Phylogenetic analysis indicated that all the macropod-derived Eimeria species grouped in a separate marsupial clade that included Eimeria trichosuri from brushtail possums. At least 6 different clades were identified within the marsupial isolates and many of the genotypes identified are likely to be valid species, however morphological and biological data need to be collected to match sequences to previously characterized Eimeria species or identify if they are new species.

  15. COLLECTIVE-FIELD ACCELERATION

    Energy Technology Data Exchange (ETDEWEB)

    Sessler, Andrew M.

    1969-07-04

    Diverse methods proposed for the acceleration of particles by means of collective fields are reviewed. A survey is made of the various currently active experimental programs devoted to investigating collective acceleration, and the present status of the research is briefly noted.

  16. Preparing collections for digitization

    CERN Document Server

    Bulow, Anna E

    2010-01-01

    Most libraries, archives and museums are confronting the challenges of providing digital access to their collections. This guide offers guidance covering the end-to-end process of digitizing collections, from selecting records for digitization to choosing suppliers and equipment and dealing with documents that present individual problems.

  17. Efficient Immutable Collections

    NARCIS (Netherlands)

    Steindorfer, M.J.

    2017-01-01

    This thesis proposes novel and efficient data structures, suitable for immutable collection libraries, that carefully balance memory footprint and runtime performance of operations, and are aware of constraints and platform co-design challenges on the Java Virtual Machine (JVM). Collection data stru

  18. Weeding Library Collections.

    Science.gov (United States)

    Slote, Stanley J.

    This work, based on two recent research projects in the weeding of library collections and the identification of core collections, provides a comprehensive summary of the literature and research on these topics. It also presents practical guidance in weeding for the professional librarian or for the library school student. The book is divided into…

  19. UNO's Afghanistan Collection.

    Science.gov (United States)

    McKernan, M. D.

    This paper explores the background history and sources of the Afghanistan collection at the University Library, University of Nebraska at Omaha (UNO). Credit for the impetus behind the development of the collection is given to Chris Jung, a former UNO geography/geology faculty member; Ronald Roskens, then UNO chancellor; and the Afghanistan…

  20. Old tropical botanical collections:

    DEFF Research Database (Denmark)

    Friis, Ib

    2017-01-01

    The early history of botanical collections is reviewed, with particular emphasis on old collections from the tropics. The information available about older and newer botanical collections from the tropics was much improved after World War Two, including better lists of validly published names, more...... detailed description of literature and better information about collections and collectors. These improvements were initially made available as publications on paper, whereas now the information has become available on the Internet, at least in part. The changed procedures for handling botanical...... collections in connection with taxonomic research is sketched, from sending specimens on loan between institutions via publishing herbaria on microfiches to providing scanned images on the Internet. Examples from different institutions and organizations of how to make digitized images of specimens and other...

  1. Digital Audio Collections

    Directory of Open Access Journals (Sweden)

    Jason Tenter

    2010-11-01

    Full Text Available

    This paper is about the possibility of libraries creating digital music or audio collections based on the current state of the digital music industry, and in comparison with the difficulties librarians have found in adding e-books to collections. In comparing the e-book and digital music markets, factors such as digital rights management (DRM and the differences in both markets’ relationships with customers are examined. This juxtaposition suggests that where e-books have been difficult to include in library collections because publishers want to maintain control over their content, music publishers have had to resign some of the control over their products because of file-sharing, and so may work with libraries to develop these collections in a more constructive way than e-book venders. At the end of the paper, some models are suggested for developing these collections.

  2. Husserl on Collective Intentionality

    DEFF Research Database (Denmark)

    Szanto, Thomas

    2016-01-01

    Unlike Husserl’s theory of empathy and intersubjectivity, his theory of collective intentionality has hardly been studied. In this paper, I shall address this neglected but important aspect of his phenomenology. I will argue that Husserl’s contribution, on closer scrutiny, not only stands...... on an equal footing with contemporary analytic accounts but, indeed, helps to alleviate some of their shortcomings. In particular, I will elaborate on the differences in the social integration of individuals and collectives in terms of intersubjective, social, communal and collective intentionality...... for deciding between tying in collectivity with either the subject, the mode, or the content of collective intentionality. Ultimately, I wish to show that Husserlian phenomenology allows for a multi-layered and distinctively intentionalist description of communalization, a program often pointed to but, in fact...

  3. Checklist of collected plants from the Fish Springs study area

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — This checklist contains 34 families and 99 species of plants which were identified from collections made in marshes at Fish Springs study area.

  4. Two new species of the Pterostichus macrogenys species group (Coleoptera, Carabidae discovered in shallow subterranean habitats in northern Honshu, Japan

    Directory of Open Access Journals (Sweden)

    Kôji Sasakawa

    2017-01-01

    Full Text Available Shallow subterranean environments have recently received attention as a habitat for Carabidae beetles, and many new species have been discovered using collection techniques devised for this habitat. We report the discovery of two new species of the macrogenys species group of the Pterostichus subgenus Nialoe Tanaka, 1958, collected by subterranean baited traps in northern Honshu, Japan. Pterostichus shinbodakensis Sasakawa & Itô, sp. n. is described from Mt. Shinbodake, Niigata Prefecture, and P. tateishiyamanus Sasakawa & Itô, sp. n. is described from the southeastern foot of Mt. Tateishiyama, Fukushima Prefecture. Comparative male genital morphology shows that among the known species, the two new species are most closely related to P. falcispinus Sasakawa, 2005 and P. chokaisanus Sasakawa, 2009, respectively. In addition, sympatric occurrence of P. shinbodakensis with a smaller, unidentified species of the species group was also confirmed. The implications of these results for future studies of the macrogenys species group, as well as those of Nialoe, are discussed.

  5. Endangered Species Act

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The purpose of the Endangered Species Act (ESA) is to protect and recover imperiled species and the ecosystems upon which they depend. The U.S. Fish and Wildlife...

  6. A Theory of Flagship Species Action

    Directory of Open Access Journals (Sweden)

    Paul Jepson

    2015-01-01

    Full Text Available The flagship species approach is an enduring strategy in conservation. Academic discussion on flagship species has focussed on two dimensions: on what basis should they be selected and how have they been put to use. Here we consider a third dimension, namely the manner in which flagship species act and have the capacity to galvanise and influence conservation outcomes. Drawing on concepts from the social sciences, viz. affordance, framing, and actor-networks; we discuss examples of flagship species to propose a theory of flagship species action. In brief, our theory posits that a flagship species is one with traits that afford the assembly of relatively coherent networks of associations with ideational elements located in pre-existing cultural framings. These associations give rise to opportunities to align with deep cultural frames, contemporary cultural phenomena and political economy such that when a conservation action is introduced, forms of agency cause the species and human publics to change. The species becomes re-framed (or reinvigorated as a cultural asset speaking for a wider nature, publics and political agendas. Further our theory posits that species with traits that enrol in idea networks incorporating human fears, will have limited flagship capacity. This is because the ability of the representations produced to align with frames incorporating collective aspirations is constrained. In terms of applied conservation practice, our theory suggests that: a key criteria for selecting potential flagship species is presence in existing cultural frames, that effective deployment of flagship species requires an understanding of the species′ cultural associations, and a species ability to galvanise action may be limited to certain times and places. Furthermore, once deployed conservation interests will never have full control over the flagship species: it may act in uncertain and unexpected ways.

  7. Quantifying the taxonomic diversity in real species communities

    CERN Document Server

    Cartozo, C Caretta; Ricotta, C; Barthelemy, M; Caldarelli, G

    2008-01-01

    We analyze several florae (collections of plant species populating specific areas) in different geographic and climatic regions. For every list of species we produce a taxonomic classification tree and we consider its statistical properties. We find that regardless of the geographical location, the climate and the environment all species collections have universal statistical properties that we show to be also robust in time. We then compare observed data sets with simulated communities obtained by randomly sampling a large pool of species from all over the world. We find differences in the behavior of the statistical properties of the corresponding taxonomic trees. Our results suggest that it is possible to distinguish quantitatively real species assemblages from random collections and thus demonstrate the existence of correlations between species.

  8. Quantifying the taxonomic diversity in real species communities

    Energy Technology Data Exchange (ETDEWEB)

    Cartozo, Cecile Caretta [Laboratoire de Biophysique Statistique, ITP-FSB, Ecole Polytechnique Federale de Lausanne, CH-1015 Lausanne (Switzerland); Garlaschelli, Diego [Department of Physics, University of Siena, Via Roma 56, 53100 Siena (Italy); Ricotta, Carlo [Department of Plant Biology, University of Rome ' La Sapienza' , Piazzale Aldo Moro 5, 00185 Rome (Italy); Barthelemy, Marc [School of Informatics and Biocomplexity Center, Indiana University, Eigenmann Hall, 1900 East Tenth Street, Bloomington, IN 47406 (United States); Caldarelli, Guido [INFM-CNR Centro SMC Department of Physics, University of Rome ' La Sapienza' , Piazzale Aldo Moro 5, 00185 Rome (Italy)], E-mail: cecile.carettacartozo@epfl.ch, E-mail: garlaschelli@unisi.it, E-mail: carlo.ricotta@uniroma1.it, E-mail: mbarthel@indiana.edu, E-mail: guido.caldarelli@roma1.infn.it

    2008-06-06

    We analyze several florae (collections of plant species populating specific areas) in different geographic and climatic regions. For every list of species we produce a taxonomic classification tree and we consider its statistical properties. We find that regardless of the geographical location, the climate and the environment all species collections have universal statistical properties that we show to be also robust in time. We then compare observed data sets with simulated communities obtained by randomly sampling a large pool of species from all over the world. We find differences in the behavior of the statistical properties of the corresponding taxonomic trees. Our results suggest that it is possible to distinguish quantitatively real species assemblages from random collections and thus demonstrate the existence of correlations between species.

  9. Long-term collections

    CERN Multimedia

    Collectes à long terme

    2007-01-01

    The Committee of the Long Term Collections (CLT) asks for your attention for the following message from a young Peruvian scientist, following the earthquake which devastated part of her country a month ago.

  10. The Body Collected

    DEFF Research Database (Denmark)

    Skeletons, organs, tissue and blood samples from newborn babies. There are arge amounts of human material collected in hospitals, research institutes and museums. Both from the patients of the past, and from our own bodies. The exhibition The Body Collected at Medical Museion charts how doctors...... and researchers have collected, preserved and stored this material to map and understand the human body and its diseases. And how the body has been used to generate medical knowledge. Layer by layer, the body has been laid bare and investigated: cut up during dissection, magnified under microscopes, and analysed...... the collection of human tissue continues to play a crucial role. Here samples of human tissue and blood provide the raw materials for understanding the body and developing new diagnostic methods and treatments. The vast majority of us have provided a tissue or blood sample that is now stored in a biobank...

  11. Introduction to collection development

    Directory of Open Access Journals (Sweden)

    Eva Kodrič-Dačič

    2007-01-01

    Full Text Available Due to constant evolution of the libraries’ cultural environment, the process of library collection development demands extensive knowledge of specific library and information skills, understanding of library’s mission, and instant reactions to the changes in book market and to demands of library users at the same time. The author systematically introduces terminology and basic skills, which are needed for effective and efficient library collection development: basic knowledge of book and information market , library collection processing and management. The article represents basic information on financing, acquisition and library procedures: selection of library materials, checking up the relevance of bibliographic data, allocation of library funds, coordinated acquisition, selection of suppliers, ordering, claiming, inflow control, distribution of library materials and inventory control, withdrawal of library materials and monitoring the comprehensiveness and relevance of library collections.

  12. Microalgal Culture Collection Transfers

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The Milford Microalgal culture Collection holds over 200 live cultures representing 13 classes of of algae. The cultures are maintained in three different growing...

  13. NLM Digital Collections

    Data.gov (United States)

    U.S. Department of Health & Human Services — The National Library of Medicine's (NLM) Digital Collections offers a search-based Web service that provides access to the Dublin Core metadata and full-text OCR of...

  14. NOS Hydrographic Surveys Collection

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The National Oceanic and Atmospheric Administration (NOAA) has the statutory mandate to collect hydrographic data in support of nautical chart compilation for safe...

  15. Seed collection notes

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — This document contains tables, lists, and notes related to tallgrass prairie seed collection on Neal Smith National Wildlife Refuge in 1992.

  16. Walrus parts collection notes

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — The attached field diary notes provide documentation of walrus parts collection activities which occurred in the Nome and surrounding area during the periods of May...

  17. Weeding Your Collection.

    Science.gov (United States)

    Kerby, Ramona

    2002-01-01

    Offers guidelines for weeding as part of school library collection development. Highlights include developing a weeding policy; and the CREW (Continuous Review Evaluation and Weeding) method, including reasons for weeding, scheduling, and guidelines for fiction and for nonfiction. (LRW)

  18. Consulting in Collection Development.

    Science.gov (United States)

    Ash, Lee

    1980-01-01

    Considers the role of the consultant in the areas of library collection development and weeding, and offers suggestions on determining the need for a consultant, obtaining one, and what to do when the consultant arrives. (FM)

  19. Glacier Photograph Collection

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The Glacier Photograph Collection is a database of photographs of glaciers from around the world, some dating back to the mid-1850's, that provide an historical...

  20. Viabilidade, confirmação taxonômica e detecção enzimática de espécies de Acremonium preservadas sob óleo mineral na Coleção de Culturas University Recife Mycology Viability, taxonomic confirmation and enzymatic detection of Acremonium species preserved under mineral oil in the URM Culture Collection

    Directory of Open Access Journals (Sweden)

    Suellen Carvalho de Moura Braz

    2009-02-01

    Full Text Available Enzimas hidrolíticas secretadas por fungos têm um papel importante na patogenicidade das infecções. Objetivando avaliar a atividade enzimática foram testados 31 isolados de Acremonium mantidos na Coleção de Culturas University Recife Mycology. Fragmentos das culturas foram transferidos para caldo glicosado para reativação e posterior crescimento em meio ágar batata dextrose, para verificar viabilidade, pureza e confirmação taxonômica pela observação das características macroscópicas e microscópicas. Para detecção enzimática foram utilizados substratos de caseína do leite e gelatina para protease, amido para amilase e lecitina de soja para fosfolipase. Das 31 culturas, 26 (83,9% mantiveram-se viáveis e 24 (92,3% foram confirmadas taxonomicamente. Das 24 culturas, 12 (50% apresentaram atividade proteásica, duas (16,7% em caseína do leite, uma (8,3% em gelatina e nove (75% em ambos os substratos; 16 (66,7% degradaram amido. Nenhuma cultura apresentou atividade fosfolipásica. Conclui-se que espécies de Acremonium são capazes de produzir enzimas envolvidas na patogenicidade das infecções fúngicas.Hydrolytic enzymes secreted by fungi play an important role in the pathogenesis of infection. With the aim of evaluating the enzymatic activity, 31 isolates of Acremonium stored in the University of Recife Mycology (URM Culture Collection were tested. Culture fragments were transferred to glycoside broth for reactivation and further growth in potato dextrose agar medium in order to investigate viability and purity and to confirm the taxonomy through observing the macroscopic and microscopic characteristics. To detect enzymes, milk casein and gelatin were used as substrates for proteinase, starch for amylase and soy lecithin for phospholipase. Among the 31 cultures, 26 (83.9% remained viable and 24 (92.3% were confirmed taxonomically. Out of these 24 cultures, 12 (50% presented proteinase activity, of which two (16.7% were on

  1. Collective excitations in nuclei

    Energy Technology Data Exchange (ETDEWEB)

    Chomaz, Ph. [Grand Accelerateur National d`Ions Lourds (GANIL), 14 - Caen (France); Collaboration: La Direction des Sciences de la Matiere du CEA (FR); Le Fonds National de la Recherche Scientifique de Belgique (BE)

    1998-12-31

    The properties of the nucleus cannot be reduced to the properties of its constituents: it is a complex system. The fact that many properties of the nucleus are consequences of the existence of mean-field potential is a manifestation of this complexity. In particular, the nucleons can thus self-organize in collective motions such as giant resonances. Therefore the study of this collective motions is a very good tool to understand the properties of the nucleus itself. The purpose of this article is to stress some aspects of these collective vibrations. We have studied how an ensemble of fermions as the nucleus can self-organize in collective vibrations which are behaving like a gas of bosons in weak interaction. Understanding of these phenomena remains one of the important subjects of actuality in the context of quantal systems in strong interaction. In particular, the study of the states with one or two vibration quanta provides a direct information on the structure of nuclei close to their ground states. Moreover, some collective states appear to be very robust against the onset of chaos. This is the case of the hot giant dipole built on top of a hot nucleus which seems to survive up to rather high temperatures. Their sudden disappearance is still a subject of controversy. It may be that the mean-field and the associated collective states are playing a crucial role also in catastrophic processes such as the phase-transitions. Indeed, when the system is diluted the collective vibrations may become unstable and it seems that these unstable modes provide a natural explanation to the self organization of the system in drops. Finally, considering the diversity of the different structures of exotic nuclei one may expect new vibration types. All these studies are showing the diversity of the collective motions of strongly correlated quantum systems such as the nucleus but many open questions remain to be solved. (authors) 304 refs., 53 figs., 5 tabs.

  2. Rehabilitating the Stroke Collection

    Directory of Open Access Journals (Sweden)

    Mary Grimmond

    2006-06-01

    Full Text Available Objective The aim of this project was to complete an analysis of monograph and audiovisual items held in the Central Coast Health Service (CCHS Libraries and containing information relevant to the treatment of acute stroke. Acute stroke is treated by multidisciplinary teams of clinicians based at two hospitals within the CCHS. The adequacy of the library collection was measured by subject coverage and age. Methods The methodology used consisted of three main steps: a literature review; design, administration, and analysis of a questionnaire to members of the CCHS Acute Stroke Team; and an analysis of the libraries’ collections. The research project utilised project management methodology and an evidence based librarianship framework. Results The questionnaire revealed that electronic resources were by far the most frequently used by participants, followed in order by print journals, books, interlibrary loan articles, and audiovisual items. Collection analysis demonstrated that the monograph and audiovisual collections were adequate in both scope and currency to support the information needs of Acute Stroke Team members, with the exception of resources to support patient education. Conclusion The researchers developed recommendations for future collection development in the area of acute stroke resources. Conducting this project within the evidence based librarianship framework helped to develop library staff members’ confidence in their ability to make future collection development decisions, informed by the target group’s information needs and preferences. The collection analysis methodology was designed to be replicated, and new specialist groups within the client base of the library will be targeted to repeat the collection analysis process.

  3. Sparse matrix test collections

    Energy Technology Data Exchange (ETDEWEB)

    Duff, I.

    1996-12-31

    This workshop will discuss plans for coordinating and developing sets of test matrices for the comparison and testing of sparse linear algebra software. We will talk of plans for the next release (Release 2) of the Harwell-Boeing Collection and recent work on improving the accessibility of this Collection and others through the World Wide Web. There will only be three talks of about 15 to 20 minutes followed by a discussion from the floor.

  4. Spiral Shell Collection

    Institute of Scientific and Technical Information of China (English)

    1995-01-01

    In 1988 Zheng Haigen, a seaman with the Towboat Company of the Shanghai Salvage Bureau, began collecting spiral shells. Today he has more than 600 in his collection. The most valuable are the rare parrot shell and a shell whose spirals wind counter-clockwise. In 1991 a miniature conch with a diameter of 0.31 millimeters that he found buried in tons of sand made the Guinness Book of World Records.

  5. Collective Memories in Wikipedia

    OpenAIRE

    Ferron, Michela

    2012-01-01

    Collective memories are precious resources for the society, because they contribute to strengthening the emotional bonding between community members, maintaining groups cohesion, and directing future behavior. Understanding the formation of the collective memories of emotional upheavals is important to a better comprehension of people's reactions and of the consequences on their psychological health. Previous studies investigated the effects of single traumatizing events, but few of them app...

  6. Planktonic coelenterates collected in the North Atlantic Ocean

    NARCIS (Netherlands)

    Soest, van R.W.M.

    1973-01-01

    This short faunistic note contains a report on the species of Scyphozoa, Hydromedusae, Siphonophora and Ctenophora that were collected by OWS “Cirrus” and “Cumulus”, R.V. “Tridens” and HMS “Snellius” in the North Atlantic Ocean between 22° N and 66° N. In all, 61 species have been captured. New reco

  7. Species choice, provenance and species trials among native Brazilian species

    Energy Technology Data Exchange (ETDEWEB)

    Drumond, M.A.

    1982-01-01

    Six papers from the conference are presented. Drumond, M.A., Potential of species native to the semi-arid tropics, 766-781, (Refs. 18), reports on Anadenanthera macrocarpa, Mimosa species, Schinopsis brasiliensis, Spondias tuberosa, Ziziphus joazeiro, Cnidoscolus phyllacanthus, Bursera leptophleos (leptophloeos), Tabebuia impetiginosa, Astronium urundeuva, and Mimosa caesalpinia. Monteiro, R.F.R., Speltz, R.M., Gurgel, J.T. do A.; Silvicultural performance of 24 provenances of Araucaria angustifolia in Parana, 814-824, (Refs. 8). Pires, C.L. da S., Kalil Filho, A.N., Rosa, P.R.F. da, Parente, P.R., Zanatto, A.C.S.; Provenance trials of Cordia alliodora in the State of Sao Paulo, 988-995, (Refs. 9). Nogueira, J.C.B., Siqueira, A.C.M.F., Garrido, M.A.O., Gurgel Garrido, L.M. do A., Rosa, P.R.F., Moraes, J.L. de, Zandarin, M.A., Gurgel Filho, O.A., Trials of some native species in various regions of the State of Sao Paulo, 1051-1063, (Refs. 9) describes Centrolobium tomentosum, Peltophorum dubium, Tabebuia vellosoi, Cariniana legalis, and Balfourodendron riedelianum. Batista, M.P., Borges, J.F., Franco, M.A.B.; Early growth of a native species in comparison with exotics in northeastern Para, Brazil, 1105-1110, (Refs. 3). Jacaranda copaia is compared with Gmelina arborea, Pinus caribaea various hondurensis, Eucalyptus deglupta, and E. urophylla. Lima, P.C.F., Souza, S.M. de, Drumond, M.A.; Trials of native forest species at Petrolina, Pernambuco, 1139-1148, (Refs. 8), deals with Anadenanthera macrocarpa, Piptadenia obliqua, Pithecellobium foliolosum, Astronium urundeuva, Schinopsis brasiliensis, Cassia excelsa, Caesalpinia pyramidalis, Parkia platycephala, Pseudobombax simplicifolium, Tabebuia impetiginosa, Caesalpinia ferrea, and Aspidosperma pyrifolium. 18 references.

  8. Specialist bees collect Asteraceae pollen by distinctive abdominal drumming (Osmia) or brushing (Melissodes, Svastra)

    Science.gov (United States)

    Four species of western US Osmia (Cephalosmia) bees that are Asteraceae specialists (oligoleges) were observed to employ a heretofore unappreciated, stereotypical means of collecting pollen, abdominal drumming, to gather pollen from 19 flowering species representing nine tribes of Asteraceae. Abdom...

  9. Microalgae Culture Collection, 1985-1986

    Energy Technology Data Exchange (ETDEWEB)

    1986-01-01

    The SERI Microalgae Culture Collection was established in support of the US Department of Energy's Biofuels Program to provide a repository for strains identified or developed for mass culture biomass production and to make these strains readily available to the research community. The strains in the collection have been selected for their potential in biomass fuel applications, and many produce significant quantities of cellular storage lipids. The Culture Collection Catalog lists 20 strains of ten species. Many have been tested in outdoor mass culture systems, and several have demonstrated excellent performance as biomass producers, with yields of up to 40 grams of organic matter per square meter per day. The majority of strains added to the collection this year have been isolated from inland saline waters, although marine species are included as well. We believe that the strains in this collection can provide a source of extremely useful organisms, both for laboratory experimentation and for mass culture research. 98 refs., 31 figs., 52 tabs.

  10. Tabanidae (Diptera) of the American Museum of Natural History Collection.

    Science.gov (United States)

    Henriques, Augusto Loureiro

    2016-07-11

    A checklist of Tabanidae in the American Museum of Natural History was compiled. Over 9,000 specimens were studied. The currently accepted taxa names have been listed based on general catalogs and recent publications. Where possible, modern locality names are given and determiners of each species are provided. A total of 882 species are listed in alphabetical order; including 52 primary and 219 secondary types. The collection includes a substantial global representation of species records for this family.

  11. INVENTORY OF THE INVASIVE ALIE N PLANT SPECIES IN INDONESIA

    Directory of Open Access Journals (Sweden)

    SRI S UDARMIYATI T JITROSOEDIRDJO

    2005-01-01

    Full Text Available An inventory of the alien plant species in Indone sia based on the existing references and herbarium specimens concluded that 1936 alien plant species ar e found in Indonesia which belong to 187 families. Field studies should be done to get the complete figur es of alien plant species in Indonesia. Based on the existing figures of the plant species, the invasive alien plant species can be iden tified, followed by studies on the assessment of losses, biology, management and their possible utilizations. Alien plant species are imported to Indonesia for cultivation, collection of the botanical garden, as experimental plants or other curiosities. Aside from plants purposely imported, there are also introduced plant propagules conta-minating imported agricultural products. These alien plant species can be beneficial or have a potential of being invasive. The alien cultivated species consisted of 67% of the total number. More than half of the cultivated plants are ornamental plants. Some of th e species are naturalized or escaped from cultivation and become wild and invasive. Some other natura lized species, adapted well without any problems of invasion. There are 339 species or 17% of the species r ecorded as weeds. The highest record of weeds is found in the family of Poaceae (57 species, follo wed by Asteraceae (53 species and Cyperaceae (35 species. There are 6 families having more than 10 species of weeds: Amaranthaceae, Asteraceae, Cyperaceae, Euphorbiaceae, Poaceae, and Rubiaceae. Three families have more than 100 species: Asteraceae 162 species, Poaceae 120 species, and Papillionaceae 103 species. Five species of aquatic and 20 species of terrestrial plants considered as important alien plant species in Indonesia were identified and some of their distributions noted

  12. Brachyuran Crabs collected at Curaçao

    NARCIS (Netherlands)

    Rathbun, Mary J.

    1924-01-01

    In 1920 a report ¹) on Dr. BOEKE’S collection of crabs and shrimps from Curaçao and other Dutch West Indian Islands was published. Dr. VAN DER HORST’S collection forms an important addition to the fauna of Curaçao, especially as to the Xanthids and Majids, or spider crabs. Four new species were disc

  13. Chironomid (Diptera species recorded from UK lakes as pupal exuviae

    Directory of Open Access Journals (Sweden)

    L.P. Ruse

    2013-09-01

    Full Text Available An inventory of chironomid species (Diptera, Chironomidae data collected from 221 lake basins or reservoirs is detailed together with major physical and chemical characteristics of these waterbodies. Aquatic species of Chironomidae must rise to the water surface for adult emergence. Floating exuviae are transported by wind and water currents to lakeshores. Species data were obtained by collecting lake marginal floating pupal exuviae representing juvenile stages dwelling from across the lake. Among the 450 species found, several were new records for the British Isles.

  14. Bird Populations in Fernbank Forest: MIGRANT SPECIES.

    Science.gov (United States)

    Schmalz, Georgann

    1991-01-01

    This article discusses fragmented forests in general and provides arrival/departure data about migratory birds collected at Fernbank Forest which is located within metropolitan Atlanta. The data indicate that population trends for selected species have not changed over 19 years of migration recordings within this small, but important, fragmented…

  15. Coronavirus antibodies in African bat species.

    Science.gov (United States)

    Müller, Marcel A; Paweska, Janusz T; Leman, Patricia A; Drosten, Christian; Grywna, Klaus; Kemp, Alan; Braack, Leo; Sonnenberg, Karen; Niedrig, Matthias; Swanepoel, Robert

    2007-09-01

    Asian bats have been identified as potential reservoir hosts of coronaviruses associated with severe acute respiratory syndrome (SARS-CoV). We detected antibody reactive with SARS-CoV antigen in 47 (6.7%) of 705 bat serum specimens comprising 26 species collected in Africa; thus, African bats may harbor agents related to putative group 4 CoV.

  16. 十字花科58属94种野生植物种子脂肪酸组分分析%Fatty Acid Analysis of the Seed Oil in a Germplasm Collection of 94 Species in 58 Genera of Brassicaceae

    Institute of Scientific and Technical Information of China (English)

    孙小芹; 庞慧; 郭建林; 彭斌; 自明明; 杭悦宇

    2011-01-01

    Fatty acid composition and their correlation with other quality traits in a germplasm collection of 94 species in 58 genu-ses of Brassicaceae were analyzed by the gas chromatography. The results showed that there were 13 kinds of main fatty acid components in seed oil. Their average contents were ranked from high to low as linolenic, erucic, linoleic, and oleic acids. There existed 10 pairs with extremely significant positive correlation between palmitics acid, and stearic acid, 11 pairs with extremely significant negative correlation between linolenic acid and erucic acid, 6 pairs with significant positive correlation between palmitic acid and linoleic acid, 4 pairs with, significant negative correlation between oleic acid and linolenic acid. As correlation coefficients reflecting the degree of relationship between some fatty acid pairs were relatively low, in these fatty acid pairs, only part or very few species were consistent with the corresponding relationship, or even none showed consistency with the relationship among 19 species with the highest or lowest fatty acid content. Some excellent gertnplasms were found with good development potentiality and application prospect, comprehensively as high oleic acid (L fendleri (A. Gray) S. Watson, etc. ) , high linoleic acid (O. Violaceus L. 0. E. Schulz, etc. ), zero erucic acid ( M. Africana ( Linnaeus) R. Brown, etc. ) , low linolenic acid (L. Annua L. , etc. ) , high oleic acid and low linolenic acid ( C. Hispanica L. , etc. ). High oleic acid and low erucic acid (O. Violaceus L. O. E. Schulz, etc. ) germplasms meeting the standard of edible oil and high erucic acid ( H. Rapa L , etc. ), and high linolenic acid (S. Eurycarpa ( Maxim. ) Botsch. Var. Brevistipes Y. C. Lan et T. Y. Cheo, etc. ) germplasms had important industrial uses. This study also laid a theoretical foundation for further exploration.%利用气相色谱法对十字花科58属94种野生植物种子进行了脂肪酸组分及含量测定,并对

  17. Life Cycle Collection Management

    Directory of Open Access Journals (Sweden)

    Helen Shenton

    2003-09-01

    Full Text Available Life cycle collection management is a way of taking a long-term approach to the responsible stewardship of the British Library's collections and is one of the Library's strategic strands. It defines the different stages in a collection item's existence over time. These stages range from selection and acquisitions processing, cataloguing and press marking, through to preventive conservation, storage and retrieval. Life cycle collection management seeks to identify the costs of each stage in order to show the economic interdependencies between the phases over time. It thereby aims to demonstrate the long-term consequences of what the library takes into its collections, by making explicit the financial and other implications of decisions made at the beginning of the life cycle for the next 100 plus years. This paper describes the work over the past year at the British Library on this complex and complicated subject. It presents the emerging findings and suggests how it can be used for practical reasons (by individual curators and selectors and for economic, governance and political purposes. The paper describes the next steps in the project, for example, on a predictive data model. The British Library is seeking to benchmark itself against comparable organisations in this area. It intends to work with others on specific comparison for example, of life cycle costing of electronic and paper journals, as a prelude to eliding digital and 'traditional' formats.

  18. Flexible human collective wisdom.

    Science.gov (United States)

    Juni, Mordechai Z; Eckstein, Miguel P

    2015-12-01

    Group decisions typically outperform individual decisions. But how do groups combine their individual decisions to reach their collective decisions? Previous studies conceptualize collective decision making using static combination rules, be it a majority-voting rule or a weighted-averaging rule. Unknown is whether groups adapt their combination rules to changing information environments. We implemented a novel paradigm for which information obeyed a mixture of distributions, such that the optimal Bayesian rule is nonlinear and often follows minority opinions, while the majority rule leads to suboptimal but above chance performance. Using perceptual (Experiment 1) and cognitive (Experiment 2) signal-detection tasks, we switched the information environment halfway through the experiments to a mixture of distributions without informing participants. Groups gradually abandoned the majority rule to follow any minority opinion advocating signal presence with high confidence. Furthermore, groups with greater ability to abandon the majority rule achieved higher collective-decision accuracies. It is important to note that this abandonment was not triggered by performance loss for the majority rule relative to the first half of the experiment. Our results propose a new theory of human collective decision making: Humans make inferences about how information is distributed across individuals and time, and dynamically alter their joint decision algorithms to enhance the benefits of collective wisdom.

  19. Collection and establishment of annonaceae in El Salvador.

    OpenAIRE

    Cruz, Eduardo; Deras, Héctor

    2006-01-01

    The national center of agricultural and forest technology (CENTA), through its unit of phytogenetic resources, under took a collecting survey of annonacea species in 1998, with the objective of exploring, collect, characterize and establish collections in the experimental stations. This survey was carried out at a national level visiting properties and markets. Evaluated traits for fruits were: weight , lenght and diameter, number of seeds, texture of shell and pulp, form of fruit and carpels...

  20. Wildlife specimen collection, preservation, and shipment

    Science.gov (United States)

    White, C. LeAnn; Dusek, Robert J.; Franson, J. Christian; Friend, Milton; Gibbs, Samantha E.J.; Wild, Margaret A.

    2015-01-01

    Specimens are used to provide supporting information leading to the determination of the cause of disease or death in wildlife and for disease monitoring or surveillance. Commonly used specimens for wildlife disease investigations include intact carcasses, tissues from carcasses, euthanized or moribund animals, parasites, ingested food, feces, or environmental samples. Samples from live animals or the environment (e.g., contaminated feed) in the same vicinity as a mortality event also may be helpful. The type of specimen collected is determined by availability of samples and biological objectives. Multiple fresh, intact carcasses from affected species are the most useful in establishing a cause for a mortality event. Submission of entire carcasses allows observation of gross lesions and abnormalities, as well as disease testing of multiple tissues. Samples from live animals may be more appropriate when sick animals cannot be euthanized (e.g., threatened or endangered species) or for research and monitoring projects examining disease or agents circulating in apparently healthy animals or those not exhibiting clinical signs. Samples from live animals may include collections of blood, hair, feathers, feces, or ectoparasites, or samples obtained by swabbing lesions or orifices. Photographs and videos are useful additions for recording field and clinical signs and conveying conditions at the site. Collection of environmental samples (e.g., feces, water, feed, or soil) may be appropriate when animals cannot be captured for sampling or the disease agent may persist in the environment. If lethal collection is considered necessary, biologists should refer to the policies, procedures, and permit requirements of their institution/facility and the agency responsible for species management (U.S. Fish and Wildlife Service or State natural resource agency) prior to use in the field. If threatened or endangered species are found dead, or there is evidence of illegal take, field

  1. A new species of Eumops (Chiroptera: Molossidae) from southwestern Peru.

    Science.gov (United States)

    Medina, César E; Gregorin, Renato; Zeballos, Horacio; Zamora, Hugo T; Moras, Ligiane M

    2014-10-22

    The genus Eumops is the most diverse genera of molossid bats in the Neotropics. In Peru this genus is widely distributed and represented by nine species: E. auripendulus, E. delticus, E. hansae, E. maurus, E. nanus, E. patagonicus, E. perotis, E. trumbulli, and E. wilsoni. After several years of mammalian diversity surveys in the coastal desert and western slopes of southwestern Peru, a specimen of Eumops was collected whose unique set of traits allows us to assert that deserves to be described as a new species. Based on molecular and morphological evidence, the new species is related to medium-large sized species (i.e. E. glaucinus, E. auripendulus, and E. perotis). Cytochrome b genetic divergence between the new species and the other species of the genus was high (> 12%) and it is consistent with morphological divergence presented for this new species. This new species, endemic to Peru, increases the diversity of Eumops to 16 species.

  2. Collection for Ecuador

    CERN Multimedia

    Staff Association

    2016-01-01

    After the violent earthquake that caused the death of hundreds of people, and left thousands wounded and homeless in Ecuador, we appeal to your generosity. We are starting a collection today to help the victims, and the funds will be donated to the INEPE Institute in Quito. This organization, known at CERN for many years as it has been supported by the Long Term Collections of the Staff Association, will be responsible for sending the proceeds of the collection directly to the victims in the field. On behalf of the CERN Management and the CERN Staff Association Fabiola Gianotti, Director General, and Alessandro Raimondo, President of the Staff Association =========================== Bank account details for donations: Bank account holder: Staff Association CERN - 1211 GENEVA 23 Account number: 279-HU106832.1 IBAN: CH85 0027 9279 HU10 6832 1 BIC: UBSWCHZH80A Please mention: Ecuador

  3. Curating Virtual Data Collections

    Science.gov (United States)

    Lynnes, Chris; Leon, Amanda; Ramapriyan, Hampapuram; Tsontos, Vardis; Shie, Chung-Lin; Liu, Zhong

    2015-01-01

    NASAs Earth Observing System Data and Information System (EOSDIS) contains a rich set of datasets and related services throughout its many elements. As a result, locating all the EOSDIS data and related resources relevant to particular science theme can be daunting. This is largely because EOSDIS data's organizing principle is affected more by the way they are produced than around the expected end use. Virtual collections oriented around science themes can overcome this by presenting collections of data and related resources that are organized around the user's interest, not around the way the data were produced. Virtual collections consist of annotated web addresses (URLs) that point to data and related resource addresses, thus avoiding the need to copy all of the relevant data to a single place. These URL addresses can be consumed by a variety of clients, ranging from basic URL downloaders (wget, curl) and web browsers to sophisticated data analysis programs such as the Integrated Data Viewer.

  4. Collective supernova neutrino oscillations

    Energy Technology Data Exchange (ETDEWEB)

    Mirizzi, Alessandro [Max Planck Institute for Physics, Munich (Germany)

    2009-07-01

    Neutrinos emitted by core-collapse supernovae (SNe) represent an important laboratory for both particle physics and astrophysics. While propagating in the dense SN environment, they can feel not only the presence of background matter (via ordinary Mikheev-Smirnov-Wolfenstein effects) but also of the gas of neutrinos and antineutrinos (via neutrino-neutrino interaction effects). The neutrino-neutrino interactions appear to modify the flavor evolution of SN neutrinos in a collective way, completely different from the ordinary matter effects. In these conditions, the flavor evolution equations become highly nonlinear, sometimes resulting in surprising phenomena when the entire neutrino system oscillates coherently as a single collective mode. In this talk, I present the recent results on collective supernova neutrino flavor conversions and I discuss about the sensitivity of these effects to the ordering of the neutrino mass spectrum.

  5. Fostering collective intelligence education

    Directory of Open Access Journals (Sweden)

    Jaime Meza

    2016-06-01

    Full Text Available New educational models are necessary to update learning environments to the digitally shared communication and information. Collective intelligence is an emerging field that already has a significant impact in many areas and will have great implications in education, not only from the side of new methodologies but also as a challenge for education. This paper proposes an approach to a collective intelligence model of teaching using Internet to combine two strategies: idea management and real time assessment in the class. A digital tool named Fabricius has been created supporting these two elements to foster the collaboration and engagement of students in the learning process. As a result of the research we propose a list of KPI trying to measure individual and collective performance. We are conscious that this is just a first approach to define which aspects of a class following a course can be qualified and quantified.

  6. Impedance and Collective Effects

    CERN Document Server

    Metral, E; Rumolo, R; Herr, W

    2013-01-01

    This document is part of Subvolume C 'Accelerators and Colliders' of Volume 21 'Elementary Particles' of Landolt-Börnstein - Group I 'Elementary Particles, Nuclei and Atoms'. It contains the Chapter '4 Impedance and Collective Effects' with the content: 4 Impedance and Collective Effects Introduction 4.1 Space Charge 4.2 Wake Fields and Impedances 4.3 Coherent Instabilities 4.4 Landau Damping 4.5 Two-Stream Effects (Electron Cloud and Ions) 4.6 Beam-Beam Effects 4.7 Numerical Modelling

  7. Collection for Nepal

    CERN Document Server

    Staff Association

    2015-01-01

    Following the violent earthquake in Nepal and neighbouring countries, a collection of money to help the victims was organized at CERN. A sum of 34 800 CHF was collected, and transferred to the NGO Live to Love. On July 22, the NGO sent a letter to CERN thanking for the support (see below). You can also find more information concerning this NGO and how they use their funds on our website: http://staff-association.web.cern.ch/sites/staff-association.web.cern.ch/files/Docs/Live_to_Love.pdf

  8. Semen collection using phantom in dromedary camel.

    Science.gov (United States)

    Ziapour, S; Niasari-Naslaji, A; Mirtavousi, M; Keshavarz, M; Kalantari, A; Adel, H

    2014-12-10

    Semen collection is relatively long, unsafe, and tedious procedure in dromedary camel. The innovation of safe, hygienic, and simple approach to collect semen could make great progress in development of AI program in this species. This study investigated two methods of semen collection using phantom and artificial vagina in dromedary camel. Semen was collected using phantom (n = 4 bulls; 26 collections) and artificial vagina (n = 6 bulls; 11 collections) and diluted with INRA96 at the ratio of 1:10. The duration of semen collection, semen parameters, and morphometric features of sperm were evaluated. For specimen collected through phantom and AV, the respected duration of semen collection (411.2 ± 48.19 vs 326 ± 37.05 sec), volume (6.6 ± 0.87 vs 6 ± 1.57 ml), osmolarity (328 ± 1.6 vs 319.4 ± 3.21 mOsm/kg H2O), pH (7.7 ± 0.06 vs 7.9 ± 0.16) of semen, concentration (161.4 ± 44.05 × 10(6)/mL vs 160.2 ± 58.42 × 10(6)/mL), total motility (84.1 ± 1.89 vs 78.3 ± 3.97%), progressive forward motility (45.5 ± 3.69 vs 44.3 ± 6.41%), live percentage (72.2 ± 3.11 vs 76 ± 2.53%), and plasma membrane integrity (61.5 ± 2.49 vs 58.9 ± 4.19%) of sperm were similar (P > 0.05). The number of specimens contaminated with visible particles was greater using AV (72.7%) compared to phantom (0%; P dromedary camel.

  9. Collection for SOS animaux

    CERN Multimedia

    2005-01-01

    The Pays de Gex animal shelter is collecting funds. There will be things to buy. You will be able to make a donation and/or become a member of the association or simply get information. SOS Animaux stall (Hall, Build. 60, next to restaurant 1) On Wednesday 23 November 2005 (from 9h - 17h non-stop)

  10. Collective excitations in nuclei

    Energy Technology Data Exchange (ETDEWEB)

    Chomaz, Ph

    1997-12-31

    The properties of the nucleus cannot be reduced to the properties of its constituents: it is a complex system. The fact that many properties of the nucleus are consequences of the existence of mean-field potential is a manifestation of this complexity. In particular the nucleons can thus self-organize in collective motions such as giant resonances. Therefore the study of these collective motions is a very good to understand the properties of the nucleus itself. The purpose of this article was to stress some aspects of these collective vibrations. In particular we have studied how an ensemble of fermions as the nucleus can self-organize in collective vibrations which are behaving like a gas of bosons in weak interaction. The understanding of these phenomena remains one of the important subjects of actually in the context of quantal systems in strong interaction. In particular the study of the states with one or two vibration quanta provides a direct information on the structure if nuclei close to their ground states. (author) 270 refs.

  11. Collective Action under Globalization

    DEFF Research Database (Denmark)

    Scheuer, Steen

    Collective action in the form of industrial conflict has declined dramatically since the high tide in the 1970s in Europe. This article argues that this decline is the result of significant changes in both economic and institutional factors, influencing the calculations of employees and of their ...

  12. Deterritorializing Collective Biography

    Science.gov (United States)

    Gannon, Susanne; Walsh, Susan; Byers, Michele; Rajiva, Mythili

    2014-01-01

    This paper proposes a new move in the methodological practice of collective biography, by provoking a shift beyond any remnant attachment to the speaking/writing subject towards her dispersal and displacement via textual interventions that stress multivocality. These include the use of photographs, drama, and various genres of writing. Using a…

  13. Fully electric waste collection

    CERN Multimedia

    Anaïs Schaeffer

    2015-01-01

    Since 15 June, Transvoirie, which provides waste collection services throughout French-speaking Switzerland, has been using a fully electric lorry for its collections on the CERN site – a first for the region!   Featuring a motor powered by electric batteries that charge up when the brakes are used, the new lorry that roams the CERN site is as green as can be. And it’s not only the motor that’s electric: its waste compactor and lifting mechanism are also electrically powered*, making it the first 100% electric waste collection vehicle in French-speaking Switzerland. Considering that a total of 15.5 tonnes of household waste and paper/cardboard are collected each week from the Meyrin and Prévessin sites, the benefits for the environment are clear. This improvement comes as part of CERN’s contract with Transvoirie, which stipulates that the firm must propose ways of becoming more environmentally friendly (at no extra cost to CERN). *The was...

  14. Long-Term Collections

    CERN Multimedia

    Comité des collectes à long terme

    2011-01-01

    It is the time of the year when our fireman colleagues go around the laboratory for their traditional calendars sale. A part of the money of the sales will be donated in favour of the long-term collections. We hope that you will welcome them warmly.

  15. Collective academic supervision

    DEFF Research Database (Denmark)

    Nordentoft, Helle Merete; Thomsen, Rie; Wichmann-Hansen, Gitte

    2013-01-01

    are interconnected. Collective Academic Supervision provides possibilities for systematic interaction between individual master students in their writing process. In this process they learn core academic competencies, such as the ability to assess theoretical and practical problems in their practice and present them...

  16. Collective Rights Management Directive

    NARCIS (Netherlands)

    L. Guibault

    2014-01-01

    Collective management organisations play an essential role in enabling the mass dissemination of content that is protected by copyright and related rights within Europe and beyond, especially when such dissemination takes place over the internet. Whether it is through commercial content delivery ser

  17. Collection for Italy

    CERN Multimedia

    Fabiola Gianotti, Director-General, and Ghislain Roy, President of the Staff Association

    2016-01-01

    Following the earthquake of 24 August in central Italy, many of you have expressed your solidarity. The collection to support the victims raised a total of 10 000 CHF, which was transferred in its entirety to Italy’s civil protection through the Italian delegation to the CERN Council. The CERN Directorate and the CERN Staff Association sincerely thank you for your generosity.

  18. Collection Management, 1986.

    Science.gov (United States)

    Wortman, William A.

    1987-01-01

    The 1986 literature on collection management is reviewed under six major headings: (1) general overview; (2) materials; (3) kinds of users and libraries; (4) evaluation and cooperation; (5) selection, acquisitions, and allocation; and (6) access, weeding, and preservation. A list of 251 references is provided. (MES)

  19. Synthetic collective intelligence.

    Science.gov (United States)

    Solé, Ricard; Amor, Daniel R; Duran-Nebreda, Salva; Conde-Pueyo, Núria; Carbonell-Ballestero, Max; Montañez, Raúl

    2016-10-01

    Intelligent systems have emerged in our biosphere in different contexts and achieving different levels of complexity. The requirement of communication in a social context has been in all cases a determinant. The human brain, probably co-evolving with language, is an exceedingly successful example. Similarly, social insects complex collective decisions emerge from information exchanges between many agents. The difference is that such processing is obtained out of a limited individual cognitive power. Computational models and embodied versions using non-living systems, particularly involving robot swarms, have been used to explore the potentiality of collective intelligence. Here we suggest a novel approach to the problem grounded in the genetic engineering of unicellular systems, which can be modified in order to interact, store memories or adapt to external stimuli in collective ways. What we label as Synthetic Swarm Intelligence defines a parallel approach to the evolution of computation and swarm intelligence and allows to explore potential embodied scenarios for decision making at the microscale. Here, we consider several relevant examples of collective intelligence and their synthetic organism counterparts.

  20. Species Observations (poly) - San Diego County [ds648

    Data.gov (United States)

    California Department of Resources — Created in 2009, the SanBIOS database serves as a single repository of species observations collected by various departments within the County of San Diego's Land...

  1. Russula herrerae, a new species with marginal veil from Mexico.

    Science.gov (United States)

    Kong, Alejandro; Montoya, Adriana; Estrada-Torres, Arturo

    2002-01-01

    Russula herrerae, a new species belonging to section Plorantes, subsection Lactarioideae, characterized by the presence of a marginal veil and collected in a temperate Quercus forest in Tlaxcala, Mexico, is described and illustrated.

  2. AFSC/ABL: Juvenile rockfish DNA species identification

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Many pelagic juvenile rockfish (Sebastes) were collected in juvenile salmonid surveys in the Gulf of Alaska (GOA) from 1998 to 2002. Often species identification of...

  3. A global database of ant species abundances

    Science.gov (United States)

    Gibb, Heloise; Dunn, Rob R.; Sanders, Nathan J.; Grossman, Blair F.; Photakis, Manoli; Abril, Silvia; Agosti, Donat; Andersen, Alan N.; Angulo, Elena; Armbrecht, Ingre; Arnan, Xavier; Baccaro, Fabricio B.; Bishop, Tom R.; Boulay, Raphael; Bruhl, Carsten; Castracani, Cristina; Cerda, Xim; Del Toro, Israel; Delsinne, Thibaut; Diaz, Mireia; Donoso, David A.; Ellison, Aaron M.; Enriquez, Martha L.; Fayle, Tom M.; Feener Jr., Donald H.; Fisher, Brian L.; Fisher, Robert N.; Fitpatrick, Matthew C.; Gomez, Cristanto; Gotelli, Nicholas J.; Gove, Aaron; Grasso, Donato A.; Groc, Sarah; Guenard, Benoit; Gunawardene, Nihara; Heterick, Brian; Hoffmann, Benjamin; Janda, Milan; Jenkins, Clinton; Kaspari, Michael; Klimes, Petr; Lach, Lori; Laeger, Thomas; Lattke, John; Leponce, Maurice; Lessard, Jean-Philippe; Longino, John; Lucky, Andrea; Luke, Sarah H.; Majer, Jonathan; McGlynn, Terrence P.; Menke, Sean; Mezger, Dirk; Mori, Alessandra; Moses, Jimmy; Munyai, Thinandavha Caswell; Pacheco, Renata; Paknia, Omid; Pearce-Duvet, Jessica; Pfeiffer, Martin; Philpott, Stacy M.; Resasco, Julian; Retana, Javier; Silva, Rogerio R.; Sorger, Magdalena D.; Souza, Jorge; Suarez, Andrew V.; Tista, Melanie; Vasconcelos, Heraldo L.; Vonshak, Merav; Weiser, Michael D.; Yates, Michelle; Parr, Catherine L.

    2017-01-01

    What forces structure ecological assemblages? A key limitation to general insights about assemblage structure is the availability of data that are collected at a small spatial grain (local assemblages) and a large spatial extent (global coverage). Here, we present published and unpublished data from 51,388 ant abundance and occurrence records of more than 2693 species and 7953 morphospecies from local assemblages collected at 4212 locations around the world. Ants were selected because they are diverse and abundant globally, comprise a large fraction of animal biomass in most terrestrial communities, and are key contributors to a range of ecosystem functions. Data were collected between 1949 and 2014, and include, for each geo-referenced sampling site, both the identity of the ants collected and details of sampling design, habitat type and degree of disturbance. The aim of compiling this dataset was to provide comprehensive species abundance data in order to test relationships between assemblage structure and environmental and biogeographic factors. Data were collected using a variety of standardised methods, such as pitfall and Winkler traps, and will be valuable for studies investigating large-scale forces structuring local assemblages. Understanding such relationships is particularly critical under current rates of global change. We encourage authors holding additional data on systematically collected ant assemblages, especially those in dry and cold, and remote areas, to contact us and contribute their data to this growing dataset.

  4. BIOMASS, Displacement Volume, WATER DEPTH, SPECIES IDENTIFICATION and other tows - plankton tows data collected in the Coastal Waters of SE Alaska, Gulf of Alaska and North Pacific Ocean on NOAA Ship JOHN N. COBB cruises SECM, jc0005 and others as part of the NEP project from 1997-05-24 to 2006-08-20 (NODC Accession 0115197)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0115197 includes discrete sample, meteorological, tows - plankton tows and biological data collected aboard NOAA Ship JOHN N. COBB during cruises...

  5. ANIMALS - INDIVIDUAL - COUNTS, cetacean and SPECIES IDENTIFICATION marine mammal observation and visual observation data collected in the North Pacific Ocean on the NEW HORIZON cruises NH0005 and NH0007 as part of the NEP project from 2000-05-31 to 2000-08-12 (NODC Accession 0113948)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0113948 includes marine mammal observation, visual observation and biological data collected aboard the NEW HORIZON during cruises NH0005 and NH0007...

  6. SPECIES IDENTIFICATION - ORGANISM LENGTH, HABITAT, STOMACH CONTENTS - FULLNESS, STOMACH CONTENTS - CONTENT WEIGHT and other fish examination data collected in the Coastal Waters of SE Alaska, Gulf of Alaska and North Pacific Ocean on NOAA Ship JOHN N. COBB cruises SECM, jc0009 and others as part of the NEP project from 1997-05-21 to 2006-07-31 (NODC Accession 0115196)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0115196 includes biological and fish examination data collected aboard NOAA Ship JOHN N. COBB during cruises SECM, jc0009, jc0012, jc0016, jc0018,...

  7. Species abundance profile and discrete sample data collected in the South Atlantic Ocean and South Pacific Ocean on the LAURENCE M. GOULD and NATHANIEL B. PALMER cruises LMG0104, LMG0203 and others as part of the Southern Ocean GLOBEC project from 2001-05-01 to 2002-09-11 (NODC Accession 0112189)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0112189 includes profile, discrete sample and biological data collected aboard the LAURENCE M. GOULD and NATHANIEL B. PALMER during cruises LMG0104,...

  8. BIOMASS, SALINITY, TEMPERATURE, TAXONOMIC CODE and species abundance tows - plankton tows data collected in the North Atlantic Ocean on the ENDEAVOR and OCEANUS cruises EN307, EN330 and others as part of the GB project from 1997-10-11 to 1999-12-09 (NODC Accession 0106090)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0106090 includes tows - plankton tows, biological and physical data collected aboard the ENDEAVOR and OCEANUS during cruises EN307, EN330, EN331,...

  9. SPECIES IDENTIFICATION - LIFE STAGE and TAXONOMIC CODE tows - plankton tows data collected in the North Atlantic Ocean on NOAA Ship ALBATROSS IV, ENDEAVOR and OCEANUS cruises AL9506, AL9605 and others as part of the GB project from 1995-02-12 to 1999-05-21 (NODC Accession 0107469)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0107469 includes tows - plankton tows and biological data collected aboard NOAA Ship ALBATROSS IV, ENDEAVOR and OCEANUS during cruises AL9506, AL9605,...

  10. SPECIES IDENTIFICATION - LIFE STAGE and TAXONOMIC CODE pump cast data collected in the North Atlantic Ocean on NOAA Ship ALBATROSS IV, ENDEAVOR and OCEANUS cruises AL9505, AL9506 and others as part of the GB project from 1995-01-12 to 1999-06-23 (NODC Accession 0107647)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0107647 includes pump cast and biological data collected aboard NOAA Ship ALBATROSS IV, ENDEAVOR and OCEANUS during cruises AL9505, AL9506, AL9508,...

  11. SPECIES IDENTIFICATION - LIFE STAGE and TAXONOMIC CODE pump cast data collected in the North Atlantic Ocean on NOAA Ship ALBATROSS IV, ENDEAVOR and OCEANUS cruises AL9505, AL9506 and others as part of the GB project from 1995-01-12 to 1999-06-23 (NODC Accession 0107285)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0107285 includes pump cast and biological data collected aboard NOAA Ship ALBATROSS IV, ENDEAVOR and OCEANUS during cruises AL9505, AL9506, AL9508,...

  12. BIOMASS, TAXONOMIC CODE and species abundance tows data collected in the South Atlantic Ocean and South Pacific Ocean on the NATHANIEL B. PALMER cruises NBP0103 and NBP0104 as part of the Southern Ocean GLOBEC project from 2001-04-30 to 2001-08-26 (NODC Accession 0112172)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0112172 includes tows and biological data collected aboard the NATHANIEL B. PALMER during cruises NBP0103 and NBP0104 in the South Atlantic Ocean and...

  13. SPECIES IDENTIFICATION - DRY WEIGHT and Displacement Volume tows data collected in the South Atlantic Ocean and South Pacific Ocean on the NATHANIEL B. PALMER cruises NBP0103, NBP0104 and others as part of the Southern Ocean GLOBEC project from 2001-04-30 to 2002-09-11 (NODC Accession 0112163)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0112163 includes tows and biological data collected aboard the NATHANIEL B. PALMER during cruises NBP0103, NBP0104, NBP0202 and NBP0204 in the South...

  14. ICE - COVERAGE, ICE - TYPE, SEDIMENTS - PERCENT COVER, SPECIES IDENTIFICATION - COUNT and precipitation type visual observation data collected in the South Atlantic Ocean and South Pacific Ocean on the NATHANIEL B. PALMER cruises NBP0103, NBP0104 and others as part of the Southern Ocean GLOBEC project from 2001-04-29 to 2002-09-09 (NODC Accession 0112763)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0112763 includes meteorological, visual observation and physical data collected aboard the NATHANIEL B. PALMER during cruises NBP0103, NBP0104,...

  15. ANIMALS - INDIVIDUAL - COUNTS, SPECIES IDENTIFICATION and ANIMALS - GROUP - BEHAVIOR visual observation data collected in the South Pacific Ocean on the NATHANIEL B. PALMER cruises NBP0103, NBP0104 and others as part of the Southern Ocean GLOBEC project from 2001-04-29 to 2002-09-09 (NODC Accession 0112819)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0112819 includes visual observation and biological data collected aboard the NATHANIEL B. PALMER during cruises NBP0103, NBP0104, NBP0202 and NBP0204...

  16. STOMACH CONTENTS - FULLNESS, WATER TEMPERATURE, STOMACH CONTENTS - PREY COUNT, SPECIES IDENTIFICATION and other fish examination data collected in the Gulf of Alaska and North Pacific Ocean on the CHARTER/FISHING BOATS cruises GP0108, GP0207-01 and MF0310 as part of the NEP project from 2001-07-18 to 2003-08-08 (NODC Accession 0115262)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0115262 includes biological, fish examination and physical data collected aboard the CHARTER/FISHING BOATS during cruises GP0108, GP0207-01 and MF0310...

  17. HABITAT, WATER TEMPERATURE, SPECIES IDENTIFICATION and INDIVIDUAL FISH EXAMINATION - AGE fish examination data collected in the Gulf of Alaska and North Pacific Ocean on the CHARTER/FISHING BOATS cruises GP0108, GP0207-01 and others as part of the NEP project from 2001-07-18 to 2004-11-08 (NODC Accession 0115263)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0115263 includes fish examination, biological and physical data collected aboard the CHARTER/FISHING BOATS during cruises GP0108, GP0207-01,...

  18. ANIMALS - INDIVIDUAL - COUNTS, Flight direction, SPECIES IDENTIFICATION, ANIMALS - GROUP - BEHAVIOR and WIND SPEED visual observation data collected in the North Pacific Ocean on the NEW HORIZON cruises NH0005 and NH0007 as part of the NEP project from 2000-05-30 to 2000-08-12 (NODC Accession 0113338)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0113338 includes meteorological, visual observation and biological data collected aboard the NEW HORIZON during cruises NH0005 and NH0007 in the North...

  19. HABITAT, WATER TEMPERATURE, SPECIES IDENTIFICATION, cloud amount/frequency and other trawl data collected in the Gulf of Alaska and North Pacific Ocean on the CHARTER/FISHING BOATS cruises GP0108, GP0207-01 and others as part of the NEP project from 2001-07-18 to 2004-11-08 (NODC Accession 0115261)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0115261 includes meteorological, biological, physical and trawl data collected aboard the CHARTER/FISHING BOATS during cruises GP0108, GP0207-01,...

  20. WIND DIRECTION, Snow thickness, ICE - TYPE, SPECIES IDENTIFICATION - COUNT and other visual observation data collected in the Indian Ocean, South Atlantic Ocean and South Pacific Ocean on the LAURENCE M. GOULD and NATHANIEL B. PALMER cruises LMG0106, LMG0205 and others as part of the Southern Ocean GLOBEC project from 2001-07-26 to 2002-09-15 (NODC Accession 0112820)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0112820 includes meteorological, visual observation and physical data collected aboard the LAURENCE M. GOULD and NATHANIEL B. PALMER during cruises...

  1. BIOMASS, FLUORESCENCE and species abundance tows - undulating tow and tows data collected in the North Pacific Ocean on the NEW HORIZON, RANGE RECOVERER and THOMAS G. THOMPSON cruises NH0005, NH0007 and others as part of the NEP project from 2000-05-30 to 2002-08-16 (NODC Accession 0114240)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0114240 includes tows - undulating tow, tows and biological data collected aboard the NEW HORIZON, RANGE RECOVERER and THOMAS G. THOMPSON during...

  2. SPECIES IDENTIFICATION - LIFE STAGE and TAXONOMIC CODE tows - plankton tows data collected in the North Atlantic Ocean on NOAA Ship ALBATROSS IV, ENDEAVOR and OCEANUS cruises AL9506, AL9605 and others as part of the GB project from 1995-02-12 to 1999-05-21 (NODC Accession 0107117)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NODC Accession 0107117 includes tows - plankton tows and biological data collected aboard NOAA Ship ALBATROSS IV, ENDEAVOR and OCEANUS during cruises AL9506, AL9605,...

  3. Virulence of Fusarium species to alfalfa seedlings

    Directory of Open Access Journals (Sweden)

    Krnjaja Vesna

    2005-01-01

    Full Text Available In in vitro conditions, virulence of 91 isolates of species Fusarium genus (F. oxysporum, F. solani, F. acuminatum, F. equiseti, F. arthrosporioides, F. proliferatum, F. avenaceum, F. semitectum, F. tricinctum, F. sporotrichioides and F. graminearum towards alfalfa seedlings was investigated. Isolates of investigated species originated from diseased alfalfa plants collected on four locations in Serbia based on symptoms of wilting caused by fusarium and root rotting. Pathogenicity and virulence of investigated isolates of Fusarium spp. were determined by visual evaluation of inoculated seedlings of cultivars K28 in laboratory conditions. All isolated of investigated species had pathogenic effect on alfalfa seedlings, which expressed symptoms such as necrosis of root, moist rotting and "melting of seedlings". Colour of necrotic root tissue varied from light brown, brown, lipstick red to explicit black, depending on the Fusarium species. Strong virulence was established in 48 isolates, medium virulence in 31 and weak virulence in 12 isolates.

  4. Virulence of Fusarium species to alfalfa seedlings

    Directory of Open Access Journals (Sweden)

    Krnjaja Vesna

    2005-01-01

    Full Text Available In in vitro conditions, virulence of 91 isolates of species Fusarium genus (F. oxysporum, F. solani, F. acuminatum, F. equiseti, F. arthrosporioides, F. prolifera- tum, F. avenaceum, F. semitectum, F. tricinctum, F. sporotrichioides and F. graminearum towards alfalfa seedlings was investigated. Isolates of investigated species originated from diseased alfalfa plants collected at four locations in Serbia based on symptoms of wilting caused by Fusarium and root rotting. Pathogenicity and virulence of investigated isolates of Fusarium spp. were determined by visual evaluation of inoculated seedlings of cultivar K28 in laboratory conditions. All isolated of investigated species had pathogenic effect on alfalfa seedlings which expressed symptoms such as necrosis of root, moist rotting and "melting of seedlings". Colour of necrotic root tissue varied from light brown, brown lipstick red to explicit black, depending on the Fusarium species. Strong virulence was established in 48 isolates, medium virulence in 31 and weak virulence in 12 isolates.

  5. A new, sibling species of cave flatworm from Switzerland (Platyhelminthes, Tricladida, Dendrocoelidae)

    NARCIS (Netherlands)

    Sluys, R.

    2012-01-01

    The paper describes a new species of Dendrocoelum, collected from a swiss cave, representing the second species of this genus to be reported from subterranean localities in switzerland. The new species closely resembles two other species, D. clujanum and D. stenophallus, both from Roumania.

  6. The Origin of Species

    NARCIS (Netherlands)

    Darwin, Charles

    2005-01-01

    In The Origin of Species Darwin outlined his theory of evolution, which proposed that species had been evolving and differentiating over time under the influence of natural selection. On its publication it became hugely influential, bringing about a seismic shift in the scientific view of humanitys

  7. Support your local species

    DEFF Research Database (Denmark)

    Stärk, Johanna

    Nearly a quarter of all animal species within the European Union are threatened with extinction. Protecting many of these species will require the full spectrum of conservation actions from in-situ to ex-situ management. Holding an estimated 44% of EU Red Listed terrestrial vertebrates, zoos hereby...

  8. Aphids of Java. Part II: Sinomegoura Takahashi, 1960 (Homoptera: Aphididae), with a new species from Coffea*

    OpenAIRE

    Noordam, D.

    1986-01-01

    A description is given of Sinomegoura. The following three species were collected in Java: Sinomegoura citricola (Van der Goot, 1917), from various woody plants; Sinomegoura symplocois (Van der Goot, 1917), collected by Van der Goot from Symplocos and described by him as Aulacorthum symplocois Van der Goot, 1917; and a new species collected from leaves of Coffea sp., Sinomegoura coffeae spec. nov. Keys are given to the apterae and alatae viviparae, and the species are described.

  9. Collective Consciousness and Idealist Philosophy

    OpenAIRE

    Randrup, Dr. Axel

    2005-01-01

    Abstract Descriptions of publications on collective consciousness, collective conscious experience, and idealist philosophy by Axel Randrup. The recognition of collective consciousness overcomes the problem of solipsism, which has been seen as an argument against idealist philosophy.

  10. Collective stimulated Brillouin backscatter

    CERN Document Server

    Lushnikov, Pavel M

    2007-01-01

    We develop the statistical theory of the stimulated Brillouin backscatter (BSBS) instability of a spatially and temporally partially incoherent laser beam for laser fusion relevant plasma. We find a new regime of BSBS which has a much larger threshold than the classical threshold of a coherent beam in long-scale-length laser fusion plasma. Instability is collective because it does not depend on the dynamics of isolated speckles of laser intensity, but rather depends on averaged beam intensity. We identify convective and absolute instability regimes. Well above the incoherent threshold the coherent instability growth rate is recovered. The threshold of convective instability is inside the typical parameter region of National Ignition Facility (NIF) designs although current NIF bandwidth is not large enough to insure dominance of collective instability and suggests lower instability threshold due to speckle contribution. In contrast, we estimate that the bandwidth of KrF-laser-based fusion systems would be larg...

  11. Collective network routing

    Science.gov (United States)

    Hoenicke, Dirk

    2014-12-02

    Disclosed are a unified method and apparatus to classify, route, and process injected data packets into a network so as to belong to a plurality of logical networks, each implementing a specific flow of data on top of a common physical network. The method allows to locally identify collectives of packets for local processing, such as the computation of the sum, difference, maximum, minimum, or other logical operations among the identified packet collective. Packets are injected together with a class-attribute and an opcode attribute. Network routers, employing the described method, use the packet attributes to look-up the class-specific route information from a local route table, which contains the local incoming and outgoing directions as part of the specifically implemented global data flow of the particular virtual network.

  12. Collective stimulated Brillouin scatter

    CERN Document Server

    Korotkevich, Alexander O; Rose, Harvey A

    2011-01-01

    We develop a statistical theory of stimulated Brillouin backscatter (BSBS) of a spatially and temporally partially incoherent laser beam for laser fusion relevant plasma. We find a new collective regime of BSBS which has a much larger threshold than the classical threshold of a coherent beam in long-scale-length laser fusion plasma. We identify two contributions to BSBS convective instability increment. The first is collective with intensity threshold independent of the laser correlation time and controlled by diffraction. The second is independent of diffraction, it grows with increase of the correlation time and does not have an intensity threshold. The instability threshold is inside the typical parameter region of National Ignition Facility (NIF). We also find that the bandwidth of KrF-laser-based fusion systems would be large enough to allow additional suppression of BSBS.

  13. Markets for Collective Concerns

    DEFF Research Database (Denmark)

    Frankel, Christian; Ossandón, José; Pallesen, Trine

    tools already available - such as 'matters of public concern' (Marres 2007) and 'hybrid forums' (Callon et al. 2001; Callon 2009)- that help in framing the particularity of these arrangements. On the other hand, previous STS-market research notions developed mostly in the field of finance studies cannot...... simply be transposed to study markets for collective concerns. We will suggest three main translations: (i) from studying techno-scientific descriptions produced by financial economists inscribed in 'market devices' to studying markets as 'policy devices' enacted with the help of economists turned market......Despite the recent fall-out of finance, confidence in the market does not seem to be diminishing, but, on the contrary, market mechanisms are becoming key instruments to deal with core contemporary collective concerns, including global warming, education, environmental pollution, supply of energy...

  14. Learning and knowing collectively

    Energy Technology Data Exchange (ETDEWEB)

    Norgaard, Richard B. [Energy and Resources Program, University of California, 310 Barrows Hall, Campus Mail Code 3050, Berkeley, CA 94720-3050 (United States)

    2004-06-01

    Scholars from multiple epistemic communities using a variety of models and approaches are working together to understand climate change, biodiversity loss, and other large-scale phenomena stemming from how people interact with the environment. No single model is adequate, no single mind can grasp the multiple models and their numerous implications. Yet collectively, scientists are putting the parts together and reaching a shared understanding. How is this happening, how can it be done better, and what are the implications for ecological economics?.

  15. Quadrupole collectivity with isospin

    Energy Technology Data Exchange (ETDEWEB)

    Ginocchio, J.N.; Leviatan, A. (Theoretical Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545 (United States) Racah Institute of Physics, The Hebrew University, Jerusalem 91904 (Israel))

    1994-10-03

    We study intrinsic aspects of quadrupole collectivity with conserved isospin in the framework of the interacting boson model (IBM-3) of nuclei. A geometric visualization is achieved by means of a novel type of intrinsic states which are deformed in angular momentum yet have well defined isospin. The energy surface of the general IBM-3 Hamiltonian is derived and normal modes are identified for prolate deformations.

  16. Ferroelectricity the fundamentals collection

    CERN Document Server

    Jimenez, Basilio

    2008-01-01

    This indispensable collection of seminal papers on ferroelectricity provides an overview over almost a hundred years of basic and applied research. Containing historic contributions from renowned authors, this book presents developments in an area of science that is still rapidly growing. Although primarily aimed at scientists and academics involved in research, this will also be of use to students as well as newcomers to the field.

  17. Digital collections and exhibits

    CERN Document Server

    Denzer, Juan

    2015-01-01

    Today's libraries are taking advantage of cutting-edge technologies such as flat panel displays using touch, sound, and hands-free motions to design amazing exhibits using everything from simple computer hardware to advanced technologies such as the Microsoft Kinect. Libraries of all types are striving to add new interactive experiences for their patrons through exciting digital exhibits, both online and off. Digital Collections and Exhibits takes away the mystery of designing stunning digital exhibits to spotlight library trea

  18. A new species of Falsocaenia Pic, 1922 from Amazonian Rainforest (Coleoptera: Lycidae) with an updated key to the species.

    Science.gov (United States)

    Ferreira, Vinicius S

    2016-04-25

    While searching for Calochromini (Coleoptera: Lycidae) specimens in entomological collections and identifying other Lycidae, a new species of Falsocaenia Pic, 1922 was found in the collection of Instituto Nacional de Pesquisas da Amazônia (INPA). This genus is one of the smallest in the tribe Calopterini with 13 known species, two of which were recently described by Bocákova et al. (2012) in their revision of the genus, and can be found in Central and South America.

  19. Curating Virtual Data Collections

    Science.gov (United States)

    Lynnes, C.; Ramapriyan, H.; Leon, A.; Tsontos, V. M.; Liu, Z.; Shie, C. L.

    2015-12-01

    NASA's Earth Observing System Data and Information System (EOSDIS) contains a rich set of datasets and related services throughout its many elements. As a result, locating all the EOSDIS data and related resources relevant to particular science theme can be daunting. This is largely because EOSDIS data's organizing principle is affected more by the way they are produced than around the expected end use.Virtual collections oriented around science themes can overcome this by presenting collections of data and related resources that are organized around the user's interest, not around the way the data were produced. Science themes can be: Specific applications (uses) of the data, e.g., landslide prediction Geophysical events (e.g., Hurricane Sandy) A specific science research problem Virtual collections consist of annotated web addresses (URLs) that point to data and related resource addresses, thus avoiding the need to copy all of the relevant data to a single place. These URL addresses can be consumed by a variety of clients, ranging from basic URL downloaders (wget, curl) and web browsers to sophisticated data analysis programs such as the Integrated Data Viewer. Eligible resources include anything accessible via URL: data files: data file URLs data subsets: OPeNDAP, webification or Web Coverage Service URLs data visualizations: Web Map Service data search results: OpenSearch Atom response custom analysis workflows: e.g., Giovanni analysis URL

  20. Recurrent neural collective classification.

    Science.gov (United States)

    Monner, Derek D; Reggia, James A

    2013-12-01

    With the recent surge in availability of data sets containing not only individual attributes but also relationships, classification techniques that take advantage of predictive relationship information have gained in popularity. The most popular existing collective classification techniques have a number of limitations-some of them generate arbitrary and potentially lossy summaries of the relationship data, whereas others ignore directionality and strength of relationships. Popular existing techniques make use of only direct neighbor relationships when classifying a given entity, ignoring potentially useful information contained in expanded neighborhoods of radius greater than one. We present a new technique that we call recurrent neural collective classification (RNCC), which avoids arbitrary summarization, uses information about relationship directionality and strength, and through recursive encoding, learns to leverage larger relational neighborhoods around each entity. Experiments with synthetic data sets show that RNCC can make effective use of relationship data for both direct and expanded neighborhoods. Further experiments demonstrate that our technique outperforms previously published results of several collective classification methods on a number of real-world data sets.

  1. Work Zone Data Collection Trailer

    Data.gov (United States)

    Federal Laboratory Consortium — The Work Zone Data Collection Trailer was designed and constructed to enhance data collection and analysis capabilities for the "Evaluating Roadway Construction Work...

  2. Species diversity of vascular plants in Si Phang-nga National Park, Phangnga Province

    Directory of Open Access Journals (Sweden)

    Leeratiwong, C.

    2005-07-01

    Full Text Available A survey of the vascular plants in Si Phang-nga National Park, Phangnga Province, was conducted from September 2002 to August 2003. Five hundred and forty three species of 287 genera and 111 families were collected. The most diverse family was Rubiaceae, 53 species. Four species of these collected plants are endemic to Thailand, Argostemma lobulatum, Aristolochia helix, Crinum thaianum and Mallotus hymenophyllus and three species, Hedyotis hedyotidea, Lipocarpha microcephala and Pterolobium intergum are newly recorded for southern Thailand.

  3. A new lichenicolous Enterographa species from Britanny (France)

    NARCIS (Netherlands)

    Sparrius, L.B.; Aptroot, A.

    2007-01-01

    Enterographa brezhonega, a fourth lichenicolous species in the genus is described. The species has been collected in an ancient woodland in western France growing on Porina rosei and probably other crustose lichens with a Trentepohlia photobiont. It shows affinities with the similar Enterographa epi

  4. Molecular identification of uncommon clinical yeast species in Iran

    Directory of Open Access Journals (Sweden)

    Ladan Karimi

    2015-03-01

    Conclusion: We identified several rare clinical isolates selected from a big collection at the species level by ITS-sequencing. As the list of yeast species as opportunistic human fungal infections is increasing dramatically, and many isolates remain unidentified using conventional methods, more sensitive and specific advanced approaches help us to clarify the aspects of microbial epidemiology of the yeast infections.

  5. A new species of Thaumamannia from Surinam (Heteroptera, Tingidae, Vianaidinae)

    NARCIS (Netherlands)

    Doesburg, van P.H.

    1977-01-01

    During soil fauna investigations performed in 1959 by Dr. J. van der Drift (see his study, 1963), three specimens were collected of a small coleopteroid heteropteron, representing a new species belonging to the genus Thaumamannia Drake & Davis, 1960. Up till now, only one other species in this genus

  6. New species of Ashmeadiella Cockerell (Hymenoptera: Megachilidae) from Mexico

    Science.gov (United States)

    Two new species of bees from Mexico are described and illustrated here: Ashmeadiella (Ashmeadiella) danuncia n. sp. and A. (A.) mandibularis n. sp. These species are most frequently found visiting flowers of Cactaceae, although they have also been collected on flowers of Acacia, Prosopis, Lopezia, D...

  7. A new species of Symplocos (Symplocaceae) from southern Ecuador.

    Science.gov (United States)

    Ulloa Ulloa, Carmen; Ståhl, Bertil; Minga, Danilo; Ansaloni, Raffaella

    2015-01-01

    A new species from Ecuador, Symplocos limonensis, is here described and illustrated. It resembles Symplocos clethrifolia but differs by having larger leaves with evident (i.e., not concealed) areoles on lower surface, sessile inflorescences, smaller white corollas, and fewer stamens. The species is only known from three collections in the Andean forests of Morona-Santiago Province in southern Ecuador.

  8. New foliicolous species of Cladosporium from South America

    NARCIS (Netherlands)

    Schubert, K.; Greslebin, A.; Groenewald, J.Z.; Crous, P.W.

    2009-01-01

    Two new species of Cladosporium found on necrotic needles of Pinus ponderosa trees in Patagonia, Argentina, are described as C. chubutense and C. pini-ponderosae. An additional isolate from dead leaves of Cortaderia collected in Colombia, which is a sister taxon to the species occurring on Pinus, is

  9. A new species of Cryptocellus (Arachnida: Ricinulei from Eastern Amazonia

    Directory of Open Access Journals (Sweden)

    Ricardo Pinto-da-Rocha

    2012-10-01

    Full Text Available Cryptocellus canga sp. nov. is described from specimens collected in several caves at Carajás National Forest, Pará, Brazil. The new species differs from other species of the genus by the morphology of copulatory apparatus of the male leg III.

  10. Trichoderma (Hypocrea) species with green ascospores from China

    NARCIS (Netherlands)

    Zhu, Z.X.; Zhuang, W.Y.

    2015-01-01

    Stromata of Trichoderma species having green ascospores were collected in various regions of China. Based on morphology of the sexual and asexual morph, culture characteristics, and sequence analyses of rpb2 and tef1 genes, 17 species with green ascospores were identified. Among them, Trichoderma ro

  11. Records and Distribution of New World Phlebotomine Sand Flies (Psychodidae, Diptera), With Special Emphasis on Primary Types and Species Diversity.

    Science.gov (United States)

    Rueda, Leopoldo M; Foley, Desmond H; Pecor, David; Wolkoff, Matthew

    2015-01-01

    This article includes the records and distribution of Phlebotomine sand flies (Psychodidae, Diptera) in the New World based on the specimen collections housed in 2 repositories, the US National Museum of Natural History and the Museum of Entomology, Florida State Collection of Arthropods. Approximately 128 species have primary types housed in the 2 repositories, including holotypes (47 species, 3 subspecies), "types" (7 species), allotypes (52 species, 6 subspecies), lectotypes (4 species), paratypes (93 species, 10 subspecies), and neoallotype (1 species), mounted on slides, with a total of 1,107 type slides. For species diversity, collection data from 24 countries in the sand fly database were analyzed according to the number of species present, specimen records, decade of collections, and countries where collections were conducted.

  12. High Diversity and Novel Species of Pseudomonas aeruginosa Bacteriophages

    OpenAIRE

    Sepúlveda-Robles, Omar; Kameyama, Luis; Guarneros, Gabriel

    2012-01-01

    The diversity of Pseudomonas aeruginosa bacteriophages was investigated using a collection of 68 phages isolated from Central Mexico. Most of the phages carried double-stranded DNA (dsDNA) genomes and were classified into 12 species. Comparison of the genomes of selected archetypal phages with extant sequences in GenBank resulted in the identification of six novel species. This finding increased the group diversity by ∼30%. The great diversity of phage species could be related to the ubiquito...

  13. A new species of Camchaya (Asteraceae, Vernonieae from Thailand

    Directory of Open Access Journals (Sweden)

    Sukhonthip Bunwong

    2012-05-01

    Full Text Available Camchaya thailandica Bunwong, Chantar. & S.C.Keeley, sp. nov. from Phu Phrabat Historical Park, Udon Thani, Thailand is described as a new species. Plant of this new species are similar to C. gracilis (Gagnep. Bunwong & H.Rob. but differ inovate phyllaries without margin spines, 10-ribbed achenes, and broadly ovate leaves. This species is a rare endemic known only from the type collection and probably confined to open areas of sandstone hills in Udon Thani province.

  14. Collective irrationality and positive feedback.

    Directory of Open Access Journals (Sweden)

    Stamatios C Nicolis

    Full Text Available Recent experiments on ants and slime moulds have assessed the degree to which they make rational decisions when presented with a number of alternative food sources or shelter. Ants and slime moulds are just two examples of a wide range of species and biological processes that use positive feedback mechanisms to reach decisions. Here we use a generic, experimentally validated model of positive feedback between group members to show that the probability of taking the best of options depends crucially on the strength of feedback. We show how the probability of choosing the best option can be maximized by applying an optimal feedback strength. Importantly, this optimal value depends on the number of options, so that when we change the number of options the preference of the group changes, producing apparent "irrationalities". We thus reinterpret the idea that collectives show "rational" or "irrational" preferences as being a necessary consequence of the use of positive feedback. We argue that positive feedback is a heuristic which often produces fast and accurate group decision-making, but is always susceptible to apparent irrationality when studied under particular experimental conditions.

  15. Two new species of Parapharyngodon parasites of Sceloporus pyrocephalus, with a key to the species found in Mexico (Nematoda, Pharyngodonidae)

    Science.gov (United States)

    Garduño-Montes de Oca, Edgar Uriel; Mata-López, Rosario; León-Règagnon, Virginia

    2016-01-01

    Abstract Two new species of Parapharyngodon collected from the intestine of the Mexican boulder spiny lizard Sceloporus pyrocephalus are described. This study increases to 49 the number of valid species assigned to Parapharyngodon worldwide, 11 of them distributed in Mexico. Males of the two new species share the presence of four pairs of caudal papillae, an anterior echinate cloacal lip and the presence of lateral alae; however, both differ from each other in lateral alae extension and echinate cloacal anterior lip morphology. Females of both species have a prebulbar uterus and eggs shell punctuate with pores, characteristics shared with few other species of Parapharyngodon. Both new species differ from other congeneric species in the papillar arrangement, the anterior cloacal lip morphology, the lateral alae extension and total length/spicule ratio. A taxonomic key for the species of Parapharyngodon distributed in Mexico is provided. PMID:27006602

  16. On a collection of bats (Chiroptera) from Kikwit, Democratic Republic of the Congo

    DEFF Research Database (Denmark)

    van Cakenberghe, V.; de Vree, F.; Leirs, Herwig

    1999-01-01

    The collection of vertebrates made in Kikwit in the aftermath of the 1995 Ebola haemorrhagic fever epidemic included 538 bat specimens, representing 18 species. This collection contains large numbers of a very common species, Chaerephon pumila, but also of Chaerephon ansorgei, which was not yet...

  17. Percent Stomach Emptiness in Fish Collections: Sources of Variation and Study Design Implications

    Science.gov (United States)

    We summarized fish stomach content data from 369,000 fish from 402 species in 1,096 collections made between 1925 and 2009 and report on the percentage of individuals with empty stomachs (PES). The mean PES among all species, locations, habitats, dates, and collection methods was...

  18. Rediscovery of a forgotten snake in an unexpected place and remarks on a small herpetological collection from southeastern Brazil

    NARCIS (Netherlands)

    Hoogmoed, M.S.

    1997-01-01

    A collection of snakes and frogs collected in the area of Porto Real, Rio de Janeiro State, Brazil, was bought in December 1890 and remained unidentified until now. The collection comprises 100 snakes belonging to 18 species and 152 frogs belonging to 19 species. A comparison with the herpetofauna f

  19. Collective Intelligence. Chapter 17

    Science.gov (United States)

    Wolpert, David H.

    2003-01-01

    Many systems of self-interested agents have an associated performance criterion that rates the dynamic behavior of the overall system. This chapter presents an introduction to the science of such systems. Formally, collectives are defined as any system having the following two characteristics: First, the system must contain one or more agents each of which we view as trying to maximize an associated private utility; second, the system must have an associated world utility function that rates the possible behaviors of that overall system. In practice, collectives are often very large, distributed, and support little, if any, centralized communication and control, although those characteristics are not part of their formal definition. A naturally occurring example of a collective is a human economy. One can identify the agents and their private utilities as the human individuals in the economy and the associated personal rewards they are each trying to maximize. One could then identify the world utility as the time average of the gross domestic product. ("World utility" per se is not a construction internal to a human economy, but rather something defined from the outside.) To achieve high world utility it is necessary to avoid having the agents work at cross-purposes lest phenomena like liquidity traps or the Tragedy of the Commons (TOC) occur, in which agents' individually pursuing their private utilities lowers world utility. The obvious way to avoid such phenomena is by modifying the agents utility functions to be "aligned" with the world utility. This can be done via punitive legislation. A real-world example of an attempt to do this was the creation of antitrust regulations designed to prevent monopolistic practices.

  20. Collective Uncertainty Entanglement Test

    CERN Document Server

    Rudnicki, Łukasz; Życzkowski, Karol

    2011-01-01

    For a given pure state of a composite quantum system we analyze the product of its projections onto a set of locally orthogonal separable pure states. We derive a bound for this product analogous to the entropic uncertainty relations. For bipartite systems the bound is saturated for maximally entangled states and it allows us to construct a family of entanglement measures, we shall call collectibility. As these quantities are experimentally accessible, the approach advocated contributes to the task of experimental quantification of quantum entanglement, while for a three-qubit system it is capable to identify the genuine three-party entanglement.

  1. Collective neurodynamics: Phase diagram

    OpenAIRE

    Ovchinnikov, Igor V.; Li, Wenyuan; Schwartz, Robert N.; Hudson, Andrew E.; Meier, Karlheinz; Wang, Kang L.

    2016-01-01

    Here, we conceptualize the phase diagram of collective short-term bio-chemo-electric component of neurodynamics (S-ND) on the parameter space of externally, e.g., pharmacologically, controllable single-neuron parameters such as the resting potential and/or firing threshold, repolarization time, etc. This concept may become a useful tool for the systematization of knowledge in anesthesiology and provide a fruitful venue for future studies of the high-level S-ND functionalities such as short-te...

  2. Collective space and urbanity

    DEFF Research Database (Denmark)

    Kajita, Masashi

    2015-01-01

    of evolving urbanity. The focus is on the essential and iconic collective space of the building 8TALLET- ramps and open stairs. How could space beyond private domain contribute to nurture social interactions among the residents but also enhance their relations to urban environments, while protecting...... the privacy of individual households? Envisaging potential functions and uses of the shared access route, this paper discusses the importance of continuous reflections of two perspectives: 1) architects’ logic (opportunistic attempt) of space making and 2) residents’ consideration and appropriation of spaces....

  3. Collective spatial keyword querying

    DEFF Research Database (Denmark)

    Cao, Xin; Cong, Gao; Jensen, Christian S.;

    2011-01-01

    With the proliferation of geo-positioning and geo-tagging, spatial web objects that possess both a geographical location and a textual description are gaining in prevalence, and spatial keyword queries that exploit both location and textual description are gaining in prominence. However......, the queries studied so far generally focus on finding individual objects that each satisfy a query rather than finding groups of objects where the objects in a group collectively satisfy a query. We define the problem of retrieving a group of spatial web objects such that the group's keywords cover the query...

  4. Adsorption and collective paramagnetism

    CERN Document Server

    Selwood, Pierce W

    1962-01-01

    Adsorption and Collective Paramagnetism describes a novel method for studying chemisorption. The method is based on the change in the number of unpaired electrons in the adsorbent as chemisorption occurs. The method is applicable to almost all adsorbates, but it is restricted to ferromagnetic adsorbents such as nickel, which may be obtained in the form of very small particles, that is to say, to ferromagnetic adsorbents with a high specific surface. While almost all the data used illustratively have been published elsewhere this is the first complete review of the subject. The book is addresse

  5. Husserl on Collective Intentionality

    DEFF Research Database (Denmark)

    Szanto, Thomas

    2016-01-01

    Unlike Husserl’s theory of empathy and intersubjectivity, his theory of collective intentionality has hardly been studied. In this paper, I shall address this neglected but important aspect of his phenomenology. I will argue that Husserl’s contribution, on closer scrutiny, not only stands......, respectively. On this background, I will concentrate on Husserl’s alternative construal and demonstrate how it entails a robust anti-individualism regarding both the form and the subject of we-intentions. I will suggest that, contrary to appearances, Husserl does not fall prey to committing a content...

  6. Collection for Philippines

    CERN Multimedia

    Staff Association

    2015-01-01

    Following the devastating Typhoon Haiyan that hit the Philippines in autumn 2013, a collection of funds to help the victims was organised at CERN. An amount of 16 950 CHF had been contributed and was forwarded to Caritas Switzerland. Tuesday 14 July, we received a message from Caritas in order to thank all the contributors for their generosity and to share with you their project’s progress and the results obtained so far. You can find the report on our website: http://staff-association.web.cern.ch/sites/staff-association.web.cern.ch/files/Docs/Rapport_Philippines.pdf

  7. LONG TERM COLLECTIONS

    CERN Multimedia

    2004-01-01

    The Committee would like to thank all those, from near and far, who kindly gave donations to the collection organized at the time of the sudden death of our friend and colleague Stephen O'NEALE The sum of 3,615 francs will be sent to the INEPE Association for the education of children in Quito, Ecuador. We are deeply grateful for this gesture from Steve's family and hope that they find comfort in knowing that Steve's memory will live on through the children whose daily lives will be improved by this gift.

  8. Collection for Refugiees

    CERN Multimedia

    Staff Association

    2015-01-01

    You are wonderful, thank you! In response to the refugee and migration crisis, we organised a collection in October and November which called on your generosity. We are now pleased to announce that the amount raised is CHF 14'710. These funds will be forwarded to the International Federation of Red Cross and Red Crescent Societies to respond to the humanitarian needs of the refugees and migrants, providing immediate and longer-term relief, including emergency medical care and basic health services, psychological support, temporary shelter, distribution of food & water and other urgently needed items. We thank everyone who contributed to this important cause.

  9. Cicadidae types (Hemiptera-Cicadomorpha) housed at the Museo de La Plata entomological collection (Argentina).

    Science.gov (United States)

    De Remes Lenicov, Ana M Marino; Maciá, Arnaldo; Pianzola, Bruno

    2015-06-23

    A catalog of the 161 type specimens of species of Hemiptera Cicadidae housed in the collection of the Entomology Division of the Museo de La Plata is presented. This collection represents 52 species grouped in 19 genera. For each species the original and current names, bibliographic references, type category, number of specimens, gender, Museo de La Plata code numbers, and transcription of data from labels (country, province, locality, date of collection, collector's name, and hosts) are given. Information about the state of preservation of the specimens in each series and photographs of each type species are also provided.

  10. Threatened & Endangered Species Occurrences

    Data.gov (United States)

    Kansas Data Access and Support Center — The database consists of a single statewide coverage of location records for 54 species contained in the Kansas Natural Heritage Inventory database of the Kansas...

  11. A remark on collective quantification

    NARCIS (Netherlands)

    Kontinen, J.; Szymanik, J.

    2008-01-01

    We consider collective quantification in natural language. For many years the common strategy in formalizing collective quantification has been to define the meanings of collective determiners, quantifying over collections, using certain type-shifting operations. These type-shifting operations, i.e.

  12. CT of retrorenal fluid collections

    Energy Technology Data Exchange (ETDEWEB)

    Love, L.; Demos, T.C.; Posniak, H.

    1985-07-01

    Fluid collections dorsal to one or both kidneys are often observed on CT. Most of these collections are located in the posterior pararenal space, but occasionally fluid collections that do not originate in this space also occur. The authors review retrorenal fluid collections with explanations for their occurrence.

  13. CURRENT STATE OF THE COLLECTION OF MEDICINAL PLANTS OF THE YAKUTSK BOTANICAL GARDEN

    Directory of Open Access Journals (Sweden)

    Semenova V. V.

    2016-02-01

    Full Text Available The article considers data on the stocktaking of plants in the collection of medicinal plants of the Yakut Botanical Garden on the following parameters: the study of the component composition, the inclusion in the Pharmacopoeia articles and the Russian State Register of medicinal products. Introduction test in the collection has been performed for 158 species from 99 genera and 41 families, currently the collection has 101 species from 79 genera and 34 families. Chemical composition of plants is known for 61 species. 17 species are pharmacopoeal and 15 species make medicinal products available. The rest of the medicinal plants can be used in folk medicine. Most represented are Asteraceae family (25, Ranunculaceae (20, Rosaceae (16, Fabaceae (15, Lamiaceae (13, among tested plants. According to the assessment of introduction capabilities, 49 species in the collection are highly stable, 51 - stable and just one is unstable

  14. Names and Collective Identity

    Directory of Open Access Journals (Sweden)

    Otto Krogseth

    2012-08-01

    Full Text Available The preceding two decades have displayed a remarkable awareness for a connection between the concepts "identity" and "cultural memory". David Lowenthal speaks of a "current craze for heritage"! Cultural heritage has become extremely popular, especially in combination with tourism, and has accordingly been converted into a modern system of meaning a type of "secular religion". With reference to collective identity and cultural memory, it is important to ask the cul- tural analytical questions: "Why identity now? Why heritage now?" My reply is that we experience a critical identity crisis. Three central aspects signify individual and collective identity: Continuity, coherence and individuality. The three aspects, constituting the concept of identity, are exposed to serious threats in the post-modern era: The danger of changeability, fragmentation and standardisation. This ten- dency has, however, met various compensating counter reactions like for instance "re-traditionalisation". In my presentation, I will examine the phenomenon cultural memory through examples from the German tradition -- principally from the works of Aleida and Jan Assmann.

  15. Long-Term Collections

    CERN Multimedia

    Staff Association

    2016-01-01

    45 years helping in developing countries! CERN personnel have been helping the least fortunate people on the planet since 1971. How? With the Long-Term Collections! Dear Colleagues, The Staff Association’s Long-Term Collections (LTC) Committee is delighted to share this important milestone in the life of our Laboratory with you. Indeed, whilst the name of CERN is known worldwide for scientific discoveries, it also shines in the many humanitarian projects which have been supported by the LTC since 1971. Several schools and clinics, far and wide, carry its logo... Over the past 45 years, 74 projects have been supported (9 of which are still ongoing). This all came from a group of colleagues who wanted to share a little of what life offered them here at CERN, in this haven of mutual understanding, peace and security, with those who were less fortunate elsewhere. Thus, the LTC were born... Since then, we have worked as a team to maintain the dream of these visionaries, with the help of regular donat...

  16. DataCollection Prototyping

    CERN Multimedia

    Beck, H.P.

    DataCollection is a subsystem of the Trigger, DAQ & DCS project responsible for the movement of event data from the ROS to the High Level Triggers. This includes data from Regions of Interest (RoIs) for Level 2, building complete events for the Event Filter and finally transferring accepted events to Mass Storage. It also handles passing the LVL1 RoI pointers and the allocation of Level 2 processors and load balancing of Event Building. During the last 18 months DataCollection has developed a common architecture for the hardware and software required. This involved a radical redesign integrating ideas from separate parts of earlier TDAQ work. An important milestone for this work, now achieved, has been to demonstrate this subsystem in the so-called Phase 2A Integrated Prototype. This prototype comprises the various TDAQ hardware and software components (ROSs, LVL2, etc.) under the control of the TDAQ Online software. The basic functionality has been demonstrated on small testbeds (~8-10 processing nodes)...

  17. Disinfectant effect of Methylated Ethanol against Listeria species

    OpenAIRE

    2012-01-01

    This study was carried out in order to determine the disinfectant effect of Methylated spirit® (95% methanol and 5% ethanol) as a teat dip against Listeria species. Hand milking was employed to collect 576 (288 x 2) raw milk samples from different lactating cows within Sokoto metropolis (Nigeria). 288 samples were collected before disinfecting the udder teats with Methylated spirit®, while the other 288 were collected after disinfection with Methylated spirit®. The ...

  18. Lista dos exemplares tipos de Ceratopogonidae (Diptera: Nematocera depositados na Coleção Entomológica do Instituto Oswaldo Cruz, Rio de Janeiro, Brasil List of the type species of Ceratopogonidae (Diptera, Nematocera deposited in the Entomological Collection of Instituto Oswaldo Cruz, Rio de Janeiro, Brazil

    Directory of Open Access Journals (Sweden)

    ML Felippe-Bauer

    2001-11-01

    Full Text Available A list of all type specimens of the Family Ceratopogonidae, present in the Entomological Collection of Instituto Oswaldo Cruz, Rio de Janeiro, RJ, Brazil is presented. This list includes the genera Bahiahelea, Culicoides, Dasyhelea, Downeshelea, Forcipomyia, Leptoconops, Mallochohelea, Monohelea, Neobezzia, Palpomyia and Sphaerohelea.

  19. Pigments produced by the bacteria belonging to the genus Arthrobacter

    OpenAIRE

    Sutthiwong, N.; Caro, Y.; Fouillaud, M.; Laurent, P.; Valla, A.; Dufossé, L.

    2013-01-01

    Poster communication, 7th International Congress of Pigments in Food – New technologies towards health, through colors, Novara, Italy, June 18-21, 2013.; International audience; Since several decades, pigments have been used as a taxonomic tool for the identification and classification of bacteria. Nowadays, pigment producing microorganisms have been also widely interested in scientific disciplines because of their biotechnological potential. With the growing interest in microbial pigments be...

  20. Disinfectant effect of Methylated Ethanol against Listeria species

    Directory of Open Access Journals (Sweden)

    Y Yakubu

    2012-04-01

    Full Text Available This study was carried out in order to determine the disinfectant effect of Methylated spirit® (95% methanol and 5% ethanol as a teat dip against Listeria species. Hand milking was employed to collect 576 (288 x 2 raw milk samples from different lactating cows within Sokoto metropolis (Nigeria. 288 samples were collected before disinfecting the udder teats with Methylated spirit®, while the other 288 were collected after disinfection with Methylated spirit®. The samples were analyzed using selective culture and isolation technique in which the 288 samples collected before disinfection, 114 (39.6% were positive for Listeria species. Among the positive samples 44 (38.6% were Listeria innocua, 16 (14.0% Listeria ivanovii, 36 (31.6% Listeria monocytogenes, 11 (9.6% Listeria welshimeri and 7 (6.1% Listeria seeligeri, while none of the 288 samples collected after disinfection was positive. The study has shown high prevalence of Listeria species in milk collected without washing/disinfecting the teats and has also established the sensitivity of Listeria species to methylated ethanol which can be used as dip for disinfecting udder teats before milking in order to prevent contamination with Listeria species and other methylated spirit-sensitive organisms. This study is essential to educate Fulani herdsmen and other milk handlers on the importance of disinfecting udder teats before milking. [Vet. World 2012; 5(2.000: 91-93