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Sample records for anatomically accurate meshes

  1. Deformable meshes for medical image segmentation accurate automatic segmentation of anatomical structures

    CERN Document Server

    Kainmueller, Dagmar

    2014-01-01

    ? Segmentation of anatomical structures in medical image data is an essential task in clinical practice. Dagmar Kainmueller introduces methods for accurate fully automatic segmentation of anatomical structures in 3D medical image data. The author's core methodological contribution is a novel deformation model that overcomes limitations of state-of-the-art Deformable Surface approaches, hence allowing for accurate segmentation of tip- and ridge-shaped features of anatomical structures. As for practical contributions, she proposes application-specific segmentation pipelines for a range of anatom

  2. D-BRAIN: Anatomically Accurate Simulated Diffusion MRI Brain Data.

    Science.gov (United States)

    Perrone, Daniele; Jeurissen, Ben; Aelterman, Jan; Roine, Timo; Sijbers, Jan; Pizurica, Aleksandra; Leemans, Alexander; Philips, Wilfried

    2016-01-01

    Diffusion Weighted (DW) MRI allows for the non-invasive study of water diffusion inside living tissues. As such, it is useful for the investigation of human brain white matter (WM) connectivity in vivo through fiber tractography (FT) algorithms. Many DW-MRI tailored restoration techniques and FT algorithms have been developed. However, it is not clear how accurately these methods reproduce the WM bundle characteristics in real-world conditions, such as in the presence of noise, partial volume effect, and a limited spatial and angular resolution. The difficulty lies in the lack of a realistic brain phantom on the one hand, and a sufficiently accurate way of modeling the acquisition-related degradation on the other. This paper proposes a software phantom that approximates a human brain to a high degree of realism and that can incorporate complex brain-like structural features. We refer to it as a Diffusion BRAIN (D-BRAIN) phantom. Also, we propose an accurate model of a (DW) MRI acquisition protocol to allow for validation of methods in realistic conditions with data imperfections. The phantom model simulates anatomical and diffusion properties for multiple brain tissue components, and can serve as a ground-truth to evaluate FT algorithms, among others. The simulation of the acquisition process allows one to include noise, partial volume effects, and limited spatial and angular resolution in the images. In this way, the effect of image artifacts on, for instance, fiber tractography can be investigated with great detail. The proposed framework enables reliable and quantitative evaluation of DW-MR image processing and FT algorithms at the level of large-scale WM structures. The effect of noise levels and other data characteristics on cortico-cortical connectivity and tractography-based grey matter parcellation can be investigated as well. PMID:26930054

  3. Accurately simulating anisotropic thermal conduction on a moving mesh

    CERN Document Server

    Kannan, Rahul; Pakmor, Rüdiger; Marinacci, Federico; Vogelsberger, Mark

    2015-01-01

    We present a novel implementation of an extremum preserving anisotropic diffusion solver for thermal conduction on the unstructured moving Voronoi mesh of the AREPO code. The method relies on splitting the one-sided facet fluxes into normal and oblique components, with the oblique fluxes being limited such that the total flux is both locally conservative and extremum preserving. The approach makes use of harmonic averaging points and a simple, robust interpolation scheme that works well for strong heterogeneous and anisotropic diffusion problems. Moreover, the required discretisation stencil is small. Efficient fully implicit and semi-implicit time integration schemes are also implemented. We perform several numerical tests that evaluate the stability and accuracy of the scheme, including applications such as point explosions with heat conduction and calculations of convective instabilities in conducting plasmas. The new implementation is suitable for studying important astrophysical phenomena, such as the co...

  4. Accurately simulating anisotropic thermal conduction on a moving mesh

    Science.gov (United States)

    Kannan, Rahul; Springel, Volker; Pakmor, Rüdiger; Marinacci, Federico; Vogelsberger, Mark

    2016-05-01

    We present a novel implementation of an extremum preserving anisotropic diffusion solver for thermal conduction on the unstructured moving Voronoi mesh of the AREPO code. The method relies on splitting the one-sided facet fluxes into normal and oblique components, with the oblique fluxes being limited such that the total flux is both locally conservative and extremum preserving. The approach makes use of harmonic averaging points and a simple, robust interpolation scheme that works well for strong heterogeneous and anisotropic diffusion problems. Moreover, the required discretization stencil is small. Efficient fully implicit and semi-implicit time integration schemes are also implemented. We perform several numerical tests that evaluate the stability and accuracy of the scheme, including applications such as point explosions with heat conduction and calculations of convective instabilities in conducting plasmas. The new implementation is suitable for studying important astrophysical phenomena, such as the conductive heat transport in galaxy clusters, the evolution of supernova remnants, or the distribution of heat from black hole-driven jets into the intracluster medium.

  5. Surface mesh to voxel data registration for patient-specific anatomical modeling

    Science.gov (United States)

    de Oliveira, Júlia E. E.; Giessler, Paul; Keszei, András.; Herrler, Andreas; Deserno, Thomas M.

    2016-03-01

    Virtual Physiological Human (VPH) models are frequently used for training, planning, and performing medical procedures. The Regional Anaesthesia Simulator and Assistant (RASimAs) project has the goal of increasing the application and effectiveness of regional anesthesia (RA) by combining a simulator of ultrasound-guided and electrical nerve-stimulated RA procedures and a subject-specific assistance system through an integration of image processing, physiological models, subject-specific data, and virtual reality. Individualized models enrich the virtual training tools for learning and improving regional anaesthesia (RA) skills. Therefore, we suggest patient-specific VPH models that are composed by registering the general mesh-based models with patient voxel data-based recordings. Specifically, the pelvis region has been focused for the support of the femoral nerve block. The processing pipeline is composed of different freely available toolboxes such as MatLab, the open Simulation framework (SOFA), and MeshLab. The approach of Gilles is applied for mesh-to-voxel registration. Personalized VPH models include anatomical as well as mechanical properties of the tissues. Two commercial VPH models (Zygote and Anatomium) were used together with 34 MRI data sets. Results are presented for the skin surface and pelvic bones. Future work will extend the registration procedure to cope with all model tissue (i.e., skin, muscle, bone, vessel, nerve, fascia) in a one-step procedure and extrapolating the personalized models to body regions actually being out of the captured field of view.

  6. Anatomically accurate high resolution modeling of human whole heart electromechanics: A strongly scalable algebraic multigrid solver method for nonlinear deformation

    Science.gov (United States)

    Augustin, Christoph M.; Neic, Aurel; Liebmann, Manfred; Prassl, Anton J.; Niederer, Steven A.; Haase, Gundolf; Plank, Gernot

    2016-01-01

    Electromechanical (EM) models of the heart have been used successfully to study fundamental mechanisms underlying a heart beat in health and disease. However, in all modeling studies reported so far numerous simplifications were made in terms of representing biophysical details of cellular function and its heterogeneity, gross anatomy and tissue microstructure, as well as the bidirectional coupling between electrophysiology (EP) and tissue distension. One limiting factor is the employed spatial discretization methods which are not sufficiently flexible to accommodate complex geometries or resolve heterogeneities, but, even more importantly, the limited efficiency of the prevailing solver techniques which is not sufficiently scalable to deal with the incurring increase in degrees of freedom (DOF) when modeling cardiac electromechanics at high spatio-temporal resolution. This study reports on the development of a novel methodology for solving the nonlinear equation of finite elasticity using human whole organ models of cardiac electromechanics, discretized at a high para-cellular resolution. Three patient-specific, anatomically accurate, whole heart EM models were reconstructed from magnetic resonance (MR) scans at resolutions of 220 μm, 440 μm and 880 μm, yielding meshes of approximately 184.6, 24.4 and 3.7 million tetrahedral elements and 95.9, 13.2 and 2.1 million displacement DOF, respectively. The same mesh was used for discretizing the governing equations of both electrophysiology (EP) and nonlinear elasticity. A novel algebraic multigrid (AMG) preconditioner for an iterative Krylov solver was developed to deal with the resulting computational load. The AMG preconditioner was designed under the primary objective of achieving favorable strong scaling characteristics for both setup and solution runtimes, as this is key for exploiting current high performance computing hardware. Benchmark results using the 220 μm, 440 μm and 880 μm meshes demonstrate

  7. Particle Image Velocimetry Measurements in Anatomically-Accurate Models of the Mammalian Nasal Cavity

    Science.gov (United States)

    Rumple, C.; Richter, J.; Craven, B. A.; Krane, M.

    2012-11-01

    A summary of the research being carried out by our multidisciplinary team to better understand the form and function of the nose in different mammalian species that include humans, carnivores, ungulates, rodents, and marine animals will be presented. The mammalian nose houses a convoluted airway labyrinth, where two hallmark features of mammals occur, endothermy and olfaction. Because of the complexity of the nasal cavity, the anatomy and function of these upper airways remain poorly understood in most mammals. However, recent advances in high-resolution medical imaging, computational modeling, and experimental flow measurement techniques are now permitting the study of airflow and respiratory and olfactory transport phenomena in anatomically-accurate reconstructions of the nasal cavity. Here, we focus on efforts to manufacture transparent, anatomically-accurate models for stereo particle image velocimetry (SPIV) measurements of nasal airflow. Challenges in the design and manufacture of index-matched anatomical models are addressed and preliminary SPIV measurements are presented. Such measurements will constitute a validation database for concurrent computational fluid dynamics (CFD) simulations of mammalian respiration and olfaction. Supported by the National Science Foundation.

  8. Parallelization of a high-order accurate unstructured mesh finite-volume solver

    International Nuclear Information System (INIS)

    A generic solver eliminates the need to write new finite-volume codes for each type of physics. By separating the physics from the numerics of the solver, a modular design is achieved. New physics modules can easily be written with a minimal knowledge of the finite-volume method. A parallel solver allows simulation of complex physics on intricate domains in a timely manner by using numerous processors simultaneously. In this paper we describe the steps needed to adapt a high-order accurate unstructured mesh generic finite-volume solver to a parallel architecture. A message-passing approach is used which allows the solver to operate on a distributed memory system, such as a cluster of workstations. The reconstruction stencil is determined at the preprocessing stage and an appropriate parallel data structure for the solution is formed. Fluxes for faces on the partition boundary are evaluated by communicating the reconstruction coefficients to the adjacent processor. Good performance scalability is achieved for second and fourth-order accurate solutions on cell and vertex centered meshes. (authors)

  9. A Solution Accurate, Efficient and Stable Unsplit Staggered Mesh Scheme for Three Dimensional Magnetohydrodynamics

    CERN Document Server

    Lee, Dongwook

    2013-01-01

    In this paper, we extend the unsplit staggered mesh scheme (USM) for 2D magnetohydrodynamics (MHD) (Lee and Deane, 2009) to a full 3D MHD scheme. The scheme is a finite-volume Godunov method consisting of a constrained transport (CT) method and an efficient and accurate single-step, directionally unsplit multidimensional data reconstruction-evolution algorithm, which extends the original 2D corner transport upwind (CTU) method (Colella, 1990). We present two types of data reconstruction-evolution algorithms for 3D: (1) a reduced CTU scheme and (2) a full CTU scheme. The reduced 3D CTU scheme is a variant of a simple 3D extension of the 2D CTU method by Colella (1990) and is considered as a direct extension from the 2D USM scheme. The full 3D CTU scheme is our primary 3D solver which includes all multidimensional cross-derivative terms for stability. The latter method is logically analogous to the 3D unsplit CTU method by Saltzman. The major novelties in our algorithms are twofold. First, we extend the reduced...

  10. The Space-Time Conservative Schemes for Large-Scale, Time-Accurate Flow Simulations with Tetrahedral Meshes

    Science.gov (United States)

    Venkatachari, Balaji Shankar; Streett, Craig L.; Chang, Chau-Lyan; Friedlander, David J.; Wang, Xiao-Yen; Chang, Sin-Chung

    2016-01-01

    Despite decades of development of unstructured mesh methods, high-fidelity time-accurate simulations are still predominantly carried out on structured, or unstructured hexahedral meshes by using high-order finite-difference, weighted essentially non-oscillatory (WENO), or hybrid schemes formed by their combinations. In this work, the space-time conservation element solution element (CESE) method is used to simulate several flow problems including supersonic jet/shock interaction and its impact on launch vehicle acoustics, and direct numerical simulations of turbulent flows using tetrahedral meshes. This paper provides a status report for the continuing development of the space-time conservation element solution element (CESE) numerical and software framework under the Revolutionary Computational Aerosciences (RCA) project. Solution accuracy and large-scale parallel performance of the numerical framework is assessed with the goal of providing a viable paradigm for future high-fidelity flow physics simulations.

  11. GIZMO: A New Class of Accurate, Mesh-Free Hydrodynamic Simulation Methods

    CERN Document Server

    Hopkins, Philip F

    2014-01-01

    We present and study two new Lagrangian numerical methods for solving the equations of hydrodynamics, in a systematic comparison with moving-mesh, SPH, and non-moving grid methods. The new methods are designed to capture many advantages of both smoothed-particle hydrodynamics (SPH) and grid-based or adaptive mesh refinement (AMR) schemes. They are based on a kernel discretization of the volume coupled to a high-order matrix gradient estimator and a Riemann solver acting over the volume 'overlap.' We implement and test a parallel, second-order version of the method with coupled self-gravity & cosmological integration, in the code GIZMO: this maintains exact mass, energy and momentum conservation; exhibits superior angular momentum conservation compared to all other methods we study; does not require 'artificial diffusion' terms; and allows fluid elements to move with the flow so resolution is automatically adaptive. We consider a large suite of test problems, and find that on all problems the new methods a...

  12. Accurate alignment of functional EPI data to anatomical MRI using a physics-based distortion model.

    Science.gov (United States)

    Studholme, C; Constable, R T; Duncan, J S

    2000-11-01

    Mapping of functional magnetic resonance imaging (fMRI) to conventional anatomical MRI is a valuable step in the interpretation of fMRI activations. One of the main limits on the accuracy of this alignment arises from differences in the geometric distortion induced by magnetic field inhomogeneity. This paper describes an approach to the registration of echo planar image (EPI) data to conventional anatomical images which takes into account this difference in geometric distortion. We make use of an additional spin echo EPI image and use the known signal conservation in spin echo distortion to derive a specialized multimodality nonrigid registration algorithm. We also examine a plausible modification using log-intensity evaluation of the criterion to provide increased sensitivity in areas of low EPI signal. A phantom-based imaging experiment is used to evaluate the behavior of the different criteria, comparing nonrigid displacement estimates to those provided by a imagnetic field mapping acquisition. The algorithm is then applied to a range of nine brain imaging studies illustrating global and local improvement in the anatomical alignment and localization of fMRI activations.

  13. Accurate reaction-diffusion operator splitting on tetrahedral meshes for parallel stochastic molecular simulations.

    Science.gov (United States)

    Hepburn, I; Chen, W; De Schutter, E

    2016-08-01

    Spatial stochastic molecular simulations in biology are limited by the intense computation required to track molecules in space either in a discrete time or discrete space framework, which has led to the development of parallel methods that can take advantage of the power of modern supercomputers in recent years. We systematically test suggested components of stochastic reaction-diffusion operator splitting in the literature and discuss their effects on accuracy. We introduce an operator splitting implementation for irregular meshes that enhances accuracy with minimal performance cost. We test a range of models in small-scale MPI simulations from simple diffusion models to realistic biological models and find that multi-dimensional geometry partitioning is an important consideration for optimum performance. We demonstrate performance gains of 1-3 orders of magnitude in the parallel implementation, with peak performance strongly dependent on model specification. PMID:27497550

  14. Accurate reaction-diffusion operator splitting on tetrahedral meshes for parallel stochastic molecular simulations

    Science.gov (United States)

    Hepburn, I.; Chen, W.; De Schutter, E.

    2016-08-01

    Spatial stochastic molecular simulations in biology are limited by the intense computation required to track molecules in space either in a discrete time or discrete space framework, which has led to the development of parallel methods that can take advantage of the power of modern supercomputers in recent years. We systematically test suggested components of stochastic reaction-diffusion operator splitting in the literature and discuss their effects on accuracy. We introduce an operator splitting implementation for irregular meshes that enhances accuracy with minimal performance cost. We test a range of models in small-scale MPI simulations from simple diffusion models to realistic biological models and find that multi-dimensional geometry partitioning is an important consideration for optimum performance. We demonstrate performance gains of 1-3 orders of magnitude in the parallel implementation, with peak performance strongly dependent on model specification.

  15. Anatomically constrained dipole adjustment (ANACONDA) for accurate MEG/EEG focal source localizations

    International Nuclear Information System (INIS)

    This paper proposes an alternative approach to enhance localization accuracy of MEG and EEG focal sources. The proposed approach assumes anatomically constrained spatio-temporal dipoles, initial positions of which are estimated from local peak positions of distributed sources obtained from a pre-execution of distributed source reconstruction. The positions of the dipoles are then adjusted on the cortical surface using a novel updating scheme named cortical surface scanning. The proposed approach has many advantages over the conventional ones: (1) as the cortical surface scanning algorithm uses spatio-temporal dipoles, it is robust with respect to noise; (2) it requires no a priori information on the numbers and initial locations of the activations; (3) as the locations of dipoles are restricted only on a tessellated cortical surface, it is physiologically more plausible than the conventional ECD model. To verify the proposed approach, it was applied to several realistic MEG/EEG simulations and practical experiments. From the several case studies, it is concluded that the anatomically constrained dipole adjustment (ANACONDA) approach will be a very promising technique to enhance accuracy of focal source localization which is essential in many clinical and neurological applications of MEG and EEG

  16. Tension-free Polypropylene Mesh-related Surgical Repair for Pelvic Organ Prolapse has a Good Anatomic Success Rate but a High Risk of Complications

    Institute of Scientific and Technical Information of China (English)

    Lei Zhang; Lan Zhu; Juan Chen; Tao Xu; Jing-He Lang

    2015-01-01

    Background:Food and Drug Administration announcements have highlighted the standard rate of mesh-related complications.We aimed to report the short-term results and complications of tension-free polypropylene mesh (PROSIMATM) surgical repair of pelvic organ prolapse (POP) using the standard category (C),timing (T),and site (S) classification system.Methods:A prospective cohort study of 48 patients who underwent PROSIMATM mesh kit-related surgical repairs were followed for two years at Peking Union Medical College Hospital.Recurrence was defined as symptomatic POP quantification (POP-Q) Stage Ⅱ or higher (leading edge ≥-1 cm).The Patient Global Impression of Change Questionnaire,the Chinese version of the Pelvic Floor Impact Questionnaire short-form-7 and POP/Urinary Incontinence Sexual Questionnaire short-form-12 were used to evaluate the self-perception and sexual function of each patient.Mesh-related complications conformed to the International Urogynecological Association/International Continence Society joint terminology.The paired-sample t-test,one-way analysis of variance,Fisher's exact test,Kaplan-Meier survival analysis and log-rank test were used to analyze data.Results:All patients were followed up for≥1 2 months; 30 (62.5%) patients completed the 24 months study.We observed a 93.8% (45/48) positive anatomical outcome rate at 12 months and 90.0% (27/30) at 24 months.Recurrence most frequently involved the anterior compartment (P < 0.05).Pelvic symptoms improved significantly from baseline (P < 0.05),although the patients' impressions of change and sexual function were not satisfying.Vaginal complication was the main complication observed (35.4%,17/48).The survival analysis did not identify any relationship between vaginal complication and anatomical recurrent prolapse (POP-Q ≥ Stage Ⅱ) (P =0.653).Conclusions:Tension-free polypropylene mesh (PROSIMATM)-related surgical repair of POP has better short-term anatomical outcomes at the

  17. Tension-free Polypropylene Mesh-related Surgical Repair for Pelvic Organ Prolapse has a Good Anatomic Success Rate but a High Risk of Complications

    Directory of Open Access Journals (Sweden)

    Lei Zhang

    2015-01-01

    Full Text Available Background: Food and Drug Administration announcements have highlighted the standard rate of mesh-related complications. We aimed to report the short-term results and complications of tension-free polypropylene mesh (PROSIMA™ surgical repair of pelvic organ prolapse (POP using the standard category (C, timing (T, and site (S classification system. Methods: A prospective cohort study of 48 patients who underwent PROSIMA™ mesh kit-related surgical repairs were followed for two years at Peking Union Medical College Hospital. Recurrence was defined as symptomatic POP quantification (POP-Q Stage II or higher (leading edge ≥ −1 cm. The Patient Global Impression of Change Questionnaire, the Chinese version of the Pelvic Floor Impact Questionnaire short-form-7 and POP/Urinary Incontinence Sexual Questionnaire short-form-12 were used to evaluate the self-perception and sexual function of each patient. Mesh-related complications conformed to the International Urogynecological Association/International Continence Society joint terminology. The paired-sample t-test, one-way analysis of variance, Fisher′s exact test, Kaplan-Meier survival analysis and log-rank test were used to analyze data. Results: All patients were followed up for ≥12 months; 30 (62.5% patients completed the 24 months study. We observed a 93.8% (45/48 positive anatomical outcome rate at 12 months and 90.0% (27/30 at 24 months. Recurrence most frequently involved the anterior compartment (P < 0.05. Pelvic symptoms improved significantly from baseline (P < 0.05, although the patients′ impressions of change and sexual function were not satisfying. Vaginal complication was the main complication observed (35.4%, 17/48. The survival analysis did not identify any relationship between vaginal complication and anatomical recurrent prolapse (POP-Q ≥ Stage II (P = 0.653. Conclusions: Tension-free polypropylene mesh (PROSIMA™ -related surgical repair of POP has better short

  18. Rapid 3D printing of anatomically accurate and mechanically heterogeneous aortic valve hydrogel scaffolds

    International Nuclear Information System (INIS)

    The aortic valve exhibits complex three-dimensional (3D) anatomy and heterogeneity essential for the long-term efficient biomechanical function. These are, however, challenging to mimic in de novo engineered living tissue valve strategies. We present a novel simultaneous 3D printing/photocrosslinking technique for rapidly engineering complex, heterogeneous aortic valve scaffolds. Native anatomic and axisymmetric aortic valve geometries (root wall and tri-leaflets) with 12–22 mm inner diameters (ID) were 3D printed with poly-ethylene glycol-diacrylate (PEG-DA) hydrogels (700 or 8000 MW) supplemented with alginate. 3D printing geometric accuracy was quantified and compared using Micro-CT. Porcine aortic valve interstitial cells (PAVIC) seeded scaffolds were cultured for up to 21 days. Results showed that blended PEG-DA scaffolds could achieve over tenfold range in elastic modulus (5.3±0.9 to 74.6±1.5 kPa). 3D printing times for valve conduits with mechanically contrasting hydrogels were optimized to 14 to 45 min, increasing linearly with conduit diameter. Larger printed valves had greater shape fidelity (93.3±2.6, 85.1±2.0 and 73.3±5.2% for 22, 17 and 12 mm ID porcine valves; 89.1±4.0, 84.1±5.6 and 66.6±5.2% for simplified valves). PAVIC seeded scaffolds maintained near 100% viability over 21 days. These results demonstrate that 3D hydrogel printing with controlled photocrosslinking can rapidly fabricate anatomical heterogeneous valve conduits that support cell engraftment. (paper)

  19. ACCURATE BENDING STRENGTH ANALYSIS OF ASYMMETRIC GEARS USING THE NOVEL ES-PIM WITH TRIANGULAR MESH

    Directory of Open Access Journals (Sweden)

    G. Y. Zhang

    2011-12-01

    Full Text Available This paper extends the edge-based smoothed point interpolation method (ES-PIM to bending strength analysis of asymmetric gears with complex outlines. Five sets of asymmetric gears with pressure angles of 20°/20°, 25°/20°, 30°/20°, 35°/20° and 40°/20° were generated by a specially designed rack cutter. Four key factors, e.g. accuracy, convergence, the convergence rate and the computational efficiency of the present ES-PIM were checked in great detail on these five models, and the distributions of bending stresses at the fillet of the drive side were carefully investigated. The finite element method (FEM was also used to calculate the abovementioned factors to stress the advantages of ES-PIM. The numerical results indicate that ES-PIM can provide more efficient and accurate solutions in the stress field than the FEM, and is very suitable for stress analysis of complicated asymmetric gears.

  20. Investigating the accuracy of microstereotactic-body-radiotherapy utilizing anatomically accurate 3D printed rodent-morphic dosimeters

    International Nuclear Information System (INIS)

    Purpose: Sophisticated small animal irradiators, incorporating cone-beam-CT image-guidance, have recently been developed which enable exploration of the efficacy of advanced radiation treatments in the preclinical setting. Microstereotactic-body-radiation-therapy (microSBRT) is one technique of interest, utilizing field sizes in the range of 1–15 mm. Verification of the accuracy of microSBRT treatment delivery is challenging due to the lack of available methods to comprehensively measure dose distributions in representative phantoms with sufficiently high spatial resolution and in 3 dimensions (3D). This work introduces a potential solution in the form of anatomically accurate rodent-morphic 3D dosimeters compatible with ultrahigh resolution (0.3 mm3) optical computed tomography (optical-CT) dose read-out. Methods: Rodent-morphic dosimeters were produced by 3D-printing molds of rodent anatomy directly from contours defined on x-ray CT data sets of rats and mice, and using these molds to create tissue-equivalent radiochromic 3D dosimeters from Presage. Anatomically accurate spines were incorporated into some dosimeters, by first 3D printing the spine mold, then forming a high-Z bone equivalent spine insert. This spine insert was then set inside the tissue equivalent body mold. The high-Z spinal insert enabled representative cone-beam CT IGRT targeting. On irradiation, a linear radiochromic change in optical-density occurs in the dosimeter, which is proportional to absorbed dose, and was read out using optical-CT in high-resolution (0.5 mm isotropic voxels). Optical-CT data were converted to absolute dose in two ways: (i) using a calibration curve derived from other Presage dosimeters from the same batch, and (ii) by independent measurement of calibrated dose at a point using a novel detector comprised of a yttrium oxide based nanocrystalline scintillator, with a submillimeter active length. A microSBRT spinal treatment was delivered consisting of a 180

  1. Investigating the accuracy of microstereotactic-body-radiotherapy utilizing anatomically accurate 3D printed rodent-morphic dosimeters

    Energy Technology Data Exchange (ETDEWEB)

    Bache, Steven T.; Juang, Titania; Belley, Matthew D. [Duke University Medical Physics Graduate Program, Durham, North Carolina 27705 (United States); Koontz, Bridget F.; Yoshizumi, Terry T.; Kirsch, David G.; Oldham, Mark, E-mail: mark.oldham@duke.edu [Duke University Medical Center, Durham, North Carolina 27710 (United States); Adamovics, John [Rider University, Lawrenceville, New Jersey 08648 (United States)

    2015-02-15

    Purpose: Sophisticated small animal irradiators, incorporating cone-beam-CT image-guidance, have recently been developed which enable exploration of the efficacy of advanced radiation treatments in the preclinical setting. Microstereotactic-body-radiation-therapy (microSBRT) is one technique of interest, utilizing field sizes in the range of 1–15 mm. Verification of the accuracy of microSBRT treatment delivery is challenging due to the lack of available methods to comprehensively measure dose distributions in representative phantoms with sufficiently high spatial resolution and in 3 dimensions (3D). This work introduces a potential solution in the form of anatomically accurate rodent-morphic 3D dosimeters compatible with ultrahigh resolution (0.3 mm{sup 3}) optical computed tomography (optical-CT) dose read-out. Methods: Rodent-morphic dosimeters were produced by 3D-printing molds of rodent anatomy directly from contours defined on x-ray CT data sets of rats and mice, and using these molds to create tissue-equivalent radiochromic 3D dosimeters from Presage. Anatomically accurate spines were incorporated into some dosimeters, by first 3D printing the spine mold, then forming a high-Z bone equivalent spine insert. This spine insert was then set inside the tissue equivalent body mold. The high-Z spinal insert enabled representative cone-beam CT IGRT targeting. On irradiation, a linear radiochromic change in optical-density occurs in the dosimeter, which is proportional to absorbed dose, and was read out using optical-CT in high-resolution (0.5 mm isotropic voxels). Optical-CT data were converted to absolute dose in two ways: (i) using a calibration curve derived from other Presage dosimeters from the same batch, and (ii) by independent measurement of calibrated dose at a point using a novel detector comprised of a yttrium oxide based nanocrystalline scintillator, with a submillimeter active length. A microSBRT spinal treatment was delivered consisting of a 180

  2. The use of a new 3D splint and double CT scan procedure to obtain an accurate anatomic virtual augmented model of the skull.

    Science.gov (United States)

    Swennen, G R J; Barth, E-L; Eulzer, C; Schutyser, F

    2007-02-01

    Three-dimensional (3D) virtual planning of orthognathic surgery requires detailed visualization of the interocclusal relationship. The purpose of this study was to introduce the modification of the double computed tomography (CT) scan procedure using a newly designed 3D splint in order to obtain a detailed anatomic 3D virtual augmented model of the skull. A total of 10 dry adult human cadaver skulls were used to evaluate the accuracy of the automatic rigid registration method for fusion of both CT datasets (Maxilim, version 1.3.0). The overall mean registration error was 0.1355+/-0.0323 mm (range 0.0760-0.1782 mm). Analysis of variance showed a registration method error of 0.0564 mm (P 3D splint with the double CT scan procedure allowed accurate registration and the set-up of an accurate anatomic 3D virtual augmented model of the skull with detailed dental surface.

  3. An arbitrary boundary triangle mesh generation method for multi-modality imaging

    Science.gov (United States)

    Zhang, Xuanxuan; Deng, Yong; Gong, Hui; Meng, Yuanzheng; Yang, Xiaoquan; Luo, Qingming

    2012-03-01

    Low-resolution and ill-posedness are the major challenges in diffuse optical tomography(DOT)/fluorescence molecular tomography(FMT). Recently, the multi-modality imaging technology that combines micro-computed tomography (micro-CT) with DOT/FMT is developed to improve resolution and ill-posedness. To take advantage of the fine priori anatomical maps obtained from micro-CT, we present an arbitrary boundary triangle mesh generation method for FMT/DOT/micro-CT multi-modality imaging. A planar straight line graph (PSLG) based on the image of micro-CT is obtained by an adaptive boundary sampling algorithm. The subregions of mesh are accurately matched with anatomical structures by a two-step solution, firstly, the triangles and nodes during mesh refinement are labeled respectively, and then a revising algorithm is used to modifying meshes of each subregion. The triangle meshes based on a regular model and a micro-CT image are generated respectively. The results show that the subregions of triangle meshes can match with anatomical structures accurately and triangle meshes have good quality. This provides an arbitrary boundaries triangle mesh generation method with the ability to incorporate the fine priori anatomical information into DOT/FMT reconstructions.

  4. How accurate is patients' anatomical knowledge: a cross-sectional, questionnaire study of six patient groups and a general public sample

    Directory of Open Access Journals (Sweden)

    Weinman John

    2009-06-01

    Full Text Available Abstract Background Older studies have shown that patients often do not understand the terms used by doctors and many do not even have a rudimentary understanding of anatomy. The present study was designed to investigate the levels of anatomical knowledge of different patient groups and the general public in order to see whether this has improved over time and whether patients with a specific organ pathology (e.g. liver disease have a relatively better understanding of the location of that organ. Methods Level of anatomical knowledge was assessed on a multiple-choice questionnaire, in a sample of 722 participants, comprising approximately 100 patients in each of 6 different diagnostic groups and 133 in the general population, using a between-groups, cross-sectional design. Comparisons of relative accuracy of anatomical knowledge between the present and earlier results, and across the clinical and general public groups were evaluated using Chi square tests. Associations with age and education were assessed with the Pearson correlation test and one-way analysis of variance, respectively. Results Across groups knowledge of the location of body organs was poor and has not significantly improved since an earlier equivalent study over 30 years ago (χ2 = 0.04, df = 1, ns. Diagnostic groups did not differ in their overall scores but those with liver disease and diabetes were more accurate regarding the location of their respective affected organs (χ2 = 18.10, p 2 = 10.75, p Conclusion Many patients and general public do not know the location of key body organs, even those in which their medical problem is located, which could have important consequences for doctor-patient communication. These results indicate that healthcare professionals still need to take care in providing organ specific information to patients and should not assume that patients have this information, even for those organs in which their medical problem is located.

  5. Time-Accurate Local Time Stepping and High-Order Time CESE Methods for Multi-Dimensional Flows Using Unstructured Meshes

    Science.gov (United States)

    Chang, Chau-Lyan; Venkatachari, Balaji Shankar; Cheng, Gary

    2013-01-01

    With the wide availability of affordable multiple-core parallel supercomputers, next generation numerical simulations of flow physics are being focused on unsteady computations for problems involving multiple time scales and multiple physics. These simulations require higher solution accuracy than most algorithms and computational fluid dynamics codes currently available. This paper focuses on the developmental effort for high-fidelity multi-dimensional, unstructured-mesh flow solvers using the space-time conservation element, solution element (CESE) framework. Two approaches have been investigated in this research in order to provide high-accuracy, cross-cutting numerical simulations for a variety of flow regimes: 1) time-accurate local time stepping and 2) highorder CESE method. The first approach utilizes consistent numerical formulations in the space-time flux integration to preserve temporal conservation across the cells with different marching time steps. Such approach relieves the stringent time step constraint associated with the smallest time step in the computational domain while preserving temporal accuracy for all the cells. For flows involving multiple scales, both numerical accuracy and efficiency can be significantly enhanced. The second approach extends the current CESE solver to higher-order accuracy. Unlike other existing explicit high-order methods for unstructured meshes, the CESE framework maintains a CFL condition of one for arbitrarily high-order formulations while retaining the same compact stencil as its second-order counterpart. For large-scale unsteady computations, this feature substantially enhances numerical efficiency. Numerical formulations and validations using benchmark problems are discussed in this paper along with realistic examples.

  6. Numerical simulation of pharyngeal airflow applied to obstructive sleep apnea: effect of the nasal cavity in anatomically accurate airway models.

    Science.gov (United States)

    Cisonni, Julien; Lucey, Anthony D; King, Andrew J C; Islam, Syed Mohammed Shamsul; Lewis, Richard; Goonewardene, Mithran S

    2015-11-01

    Repetitive brief episodes of soft-tissue collapse within the upper airway during sleep characterize obstructive sleep apnea (OSA), an extremely common and disabling disorder. Failure to maintain the patency of the upper airway is caused by the combination of sleep-related loss of compensatory dilator muscle activity and aerodynamic forces promoting closure. The prediction of soft-tissue movement in patient-specific airway 3D mechanical models is emerging as a useful contribution to clinical understanding and decision making. Such modeling requires reliable estimations of the pharyngeal wall pressure forces. While nasal obstruction has been recognized as a risk factor for OSA, the need to include the nasal cavity in upper-airway models for OSA studies requires consideration, as it is most often omitted because of its complex shape. A quantitative analysis of the flow conditions generated by the nasal cavity and the sinuses during inspiration upstream of the pharynx is presented. Results show that adequate velocity boundary conditions and simple artificial extensions of the flow domain can reproduce the essential effects of the nasal cavity on the pharyngeal flow field. Therefore, the overall complexity and computational cost of accurate flow predictions can be reduced.

  7. Anatomically standardised 99mTc-ECD brain perfusion SPET allows accurate differentiation between healthy volunteers, multiple system atrophy and idiopathic Parkinson's disease

    International Nuclear Information System (INIS)

    The clinical differentiation between typical idiopathic Parkinson's disease (IPD) and atypical parkinsonian disorders such as multiple system atrophy (MSA) is complicated by the presence of signs and symptoms common to both forms. The goal of this study was to re-evaluate the contribution of brain perfusion single-photon emission tomography (SPET) with anatomical standardisation and automated analysis in the differentiation of IPD and MSA. This was achieved by discriminant analysis in comparison with a large set of age- and gender-matched healthy volunteers. Technetium-99m ethyl cysteinate dimer SPET was performed on 140 subjects: 81 IPD patients (age 62.6±10.2 years; disease duration 11.0±6.4 years; 50 males/31 females), 15 MSA patients (61.5±9.2 years; disease duration 3.0±2.2 years; 9 males/6 females) and 44 age- and gender-matched healthy volunteers (age 59.2±11.9 years; 27 males/17 females). Patients were matched for severity (Hoehn and Yahr stage). Automated predefined volume of interest (VOI) analysis was carried out after anatomical standardisation. Stepwise discriminant analysis with cross-validation using the leave-one-out method was used to determine the subgroup of variables giving the highest accuracy for this differential diagnosis. Between MSA and IPD, the only regions with highly significant differences in uptake after Bonferroni correction were the putamen VOIs. Comparing MSA versus normals and IPD, with putamen VOI values as discriminating variables, cross-validated performance showed correct classification of MSA patients with a sensitivity of 73.3%, a specificity of 84% and an accuracy of 83.6%. Additional input from the right caudate head and the left prefrontal and left mesial temporal cortex allowed 100% discrimination even after cross-validation. Discrimination between the IPD group alone and healthy volunteers was accurate in 94% of the cases after cross-validation, with a sensitivity of 91.4% and a specificity of 100%. The three

  8. A simple robust and accurate a posteriori sub-cell finite volume limiter for the discontinuous Galerkin method on unstructured meshes

    Science.gov (United States)

    Dumbser, Michael; Loubère, Raphaël

    2016-08-01

    In this paper we propose a simple, robust and accurate nonlinear a posteriori stabilization of the Discontinuous Galerkin (DG) finite element method for the solution of nonlinear hyperbolic PDE systems on unstructured triangular and tetrahedral meshes in two and three space dimensions. This novel a posteriori limiter, which has been recently proposed for the simple Cartesian grid case in [62], is able to resolve discontinuities at a sub-grid scale and is substantially extended here to general unstructured simplex meshes in 2D and 3D. It can be summarized as follows: At the beginning of each time step, an approximation of the local minimum and maximum of the discrete solution is computed for each cell, taking into account also the vertex neighbors of an element. Then, an unlimited discontinuous Galerkin scheme of approximation degree N is run for one time step to produce a so-called candidate solution. Subsequently, an a posteriori detection step checks the unlimited candidate solution at time t n + 1 for positivity, absence of floating point errors and whether the discrete solution has remained within or at least very close to the bounds given by the local minimum and maximum computed in the first step. Elements that do not satisfy all the previously mentioned detection criteria are flagged as troubled cells. For these troubled cells, the candidate solution is discarded as inappropriate and consequently needs to be recomputed. Within these troubled cells the old discrete solution at the previous time tn is scattered onto small sub-cells (Ns = 2 N + 1 sub-cells per element edge), in order to obtain a set of sub-cell averages at time tn. Then, a more robust second order TVD finite volume scheme is applied to update the sub-cell averages within the troubled DG cells from time tn to time t n + 1. The new sub-grid data at time t n + 1 are finally gathered back into a valid cell-centered DG polynomial of degree N by using a classical conservative and higher order

  9. Reconstruction of internal orbital fractures with Vitallium mesh.

    Science.gov (United States)

    Sargent, L A; Fulks, K D

    1991-07-01

    Trauma to the face frequently results in internal orbital fractures that may produce large orbital defects involving multiple walls. Accurate anatomic reconstruction of the bony orbit is essential to maintain normal appearance and function of the eye following such injuries. Autogenous bone grafts do not always produce predictable long-term support of the globe. Displacement and varying amounts of bone-graft resorption can lead to enophthalmos. This study examines the use of Vitallium mesh in the acute reconstruction of internal orbital defects. Fifty-four patients with 66 orbits underwent reconstruction of internal orbital defects with Vitallium mesh. Associated fractures were anatomically reduced and rigidly fixed. Forty-six patients and 57 orbits had adequate follow-up for analysis of results. The average follow-up was 9 months, with 85 percent of the patients followed 6 months or longer. There were no postoperative orbital infections, and none of the Vitallium mesh required removal. Large internal orbital defects can be reconstructed using Vitallium mesh with good results and little risk of infection. Vitallium mesh appears to be well tolerated in spite of free communication with the sinuses. Stable reconstruction of the internal orbit can be achieved and predictable eye position maintained without donor-site morbidity.

  10. Opfront: mesh

    DEFF Research Database (Denmark)

    2015-01-01

    Mesh generation and visualization software based on the CGAL library. Folder content: drawmesh Visualize slices of the mesh (surface/volumetric) as wireframe on top of an image (3D). drawsurf Visualize surfaces of the mesh (surface/volumetric). img2mesh Convert isosurface in image to volumetric...

  11. Designing Surface Monitoring Meshes for Geologic Carbon Capture and Storage Sites: Accurate Emissions Accounting for an Essential 2°C Mitigation Technology

    Science.gov (United States)

    Augustin, C. M.; Swart, P. K.; Broad, K.

    2014-12-01

    Geologic carbon capture and storage (CCS) is a feasible solution to the international greenhouse gas (GHG) emissions problem and it has recently been called a "vital" mitigation tool by the International Energy Agency. However, there exists uncertainty concerning the terminal fate of stored carbon dioxide (CO2.) In this regard, reliable monitoring, verification and accounting (MVA) technologies are essential for making CCS publicly acceptable. Chiefly, MVA addresses safety and environmental concerns by providing a warning system to prevent or alleviate CO2 leakages. A secondary purpose of MVA technologies is to prove compliance with CO2 reduction standards through inventory verification. A key MVA tool for tracking CO2 leakages is surface (atmospheric) monitoring. Demonstrating its value, industry actors feel an impetus to invest in surface monitoring as a low-risk, high-value technology to mitigate liability in cases of potential leakages. Despite how necessary this tool is, to date, all surface monitoring mesh designs and best practices have been proposed locally, without discussion of standardization or optimization on a regional, national or international level. We identify the fundamental problem of surface monitoring mesh design as locating the monitoring sites to record CO2 levels over the designated geographic area at lowest cost with maximum impact. We approach this problem from both an operations research (OR) perspective and atmospheric dispersion perspective. From an OR perspective, we approach mesh design using multiobjective optimization models - we specify the relative placement of candidate sites, observation time interval, and optimality criteria. In the second approach, we model CO2 leakage scenarios to test the effectiveness of proposed mesh design from the first approach. We use atmospheric dispersion modeling softwares AERMOD and SCREEN3 - both tools developed by the United States Environmental Protection Agency and codified into law - for

  12. On Optimal Bilinear Quadrilateral Meshes

    Energy Technology Data Exchange (ETDEWEB)

    D' Azevedo, E.

    1998-10-26

    The novelty of this work is in presenting interesting error properties of two types of asymptotically optimal quadrilateral meshes for bilinear approximation. The first type of mesh has an error equidistributing property where the maximum interpolation error is asymptotically the same over all elements. The second type has faster than expected super-convergence property for certain saddle-shaped data functions. The super-convergent mesh may be an order of magnitude more accurate than the error equidistributing mesh. Both types of mesh are generated by a coordinate transformation of a regular mesh of squares. The coordinate transformation is derived by interpreting the Hessian matrix of a data function as a metric tensor. The insights in this work may have application in mesh design near known corner or point singularities.

  13. On Optimal Bilinear Quadrilateral Meshes

    Energy Technology Data Exchange (ETDEWEB)

    D' Azevedo, E

    2000-03-17

    The novelty of this work is in presenting interesting error properties of two types of asymptotically ''optimal'' quadrilateral meshes for bilinear approximation. The first type of mesh has an error equidistributing property where the maximum interpolation error is asymptotically the same over all elements. The second type has faster than expected ''super-convergence'' property for certain saddle-shaped data functions. The ''superconvergent'' mesh may be an order of magnitude more accurate than the error equidistributing mesh. Both types of mesh are generated by a coordinate transformation of a regular mesh of squares. The coordinate transformation is derived by interpreting the Hessian matrix of a data function as a metric tensor. The insights in this work may have application in mesh design near corner or point singularities.

  14. A method for rapid production of subject specific finite element meshes for electrical impedance tomography of the human head

    International Nuclear Information System (INIS)

    Finite element (FE) methods are widely used in electrical impedance tomography (EIT) to enable rapid image reconstruction of different tissues based on their electrical conductivity. For EIT of brain function, anatomically-accurate (head-shaped) FE meshes have been shown to improve the quality of the reconstructed images. Unfortunately, given the lack of a computational protocol to generate patient-specific meshes suitable for EIT, production of such meshes is currently ad hoc and therefore very time consuming. Here we describe a robust protocol for rapid generation of patient-specific FE meshes from MRI or CT scan data. Most of the mesh generation process is automated and uses freely available user-friendly software. Other necessary custom scripts are provided as supplementary online data and are fully documented. The patient scan data is segmented into four surfaces: brain, cerebrospinal fluid, skull and scalp. The segmented surfaces are then triangulated and used to generate a global mesh of tetrahedral elements. The resulting meshes exhibit high quality when tested with different criteria and were validated in computational simulations. The proposed protocol provides a rapid and practicable method for generation of patient-specific FE meshes of the human head that are suitable for EIT. This method could eventually be extended to other body regions and might confer benefits with other imaging techniques such as optical tomography or EEG inverse source imaging. (paper)

  15. Parallel Adaptive Mesh Refinement

    Energy Technology Data Exchange (ETDEWEB)

    Diachin, L; Hornung, R; Plassmann, P; WIssink, A

    2005-03-04

    As large-scale, parallel computers have become more widely available and numerical models and algorithms have advanced, the range of physical phenomena that can be simulated has expanded dramatically. Many important science and engineering problems exhibit solutions with localized behavior where highly-detailed salient features or large gradients appear in certain regions which are separated by much larger regions where the solution is smooth. Examples include chemically-reacting flows with radiative heat transfer, high Reynolds number flows interacting with solid objects, and combustion problems where the flame front is essentially a two-dimensional sheet occupying a small part of a three-dimensional domain. Modeling such problems numerically requires approximating the governing partial differential equations on a discrete domain, or grid. Grid spacing is an important factor in determining the accuracy and cost of a computation. A fine grid may be needed to resolve key local features while a much coarser grid may suffice elsewhere. Employing a fine grid everywhere may be inefficient at best and, at worst, may make an adequately resolved simulation impractical. Moreover, the location and resolution of fine grid required for an accurate solution is a dynamic property of a problem's transient features and may not be known a priori. Adaptive mesh refinement (AMR) is a technique that can be used with both structured and unstructured meshes to adjust local grid spacing dynamically to capture solution features with an appropriate degree of resolution. Thus, computational resources can be focused where and when they are needed most to efficiently achieve an accurate solution without incurring the cost of a globally-fine grid. Figure 1.1 shows two example computations using AMR; on the left is a structured mesh calculation of a impulsively-sheared contact surface and on the right is the fuselage and volume discretization of an RAH-66 Comanche helicopter [35]. Note the

  16. Spherical geodesic mesh generation

    Energy Technology Data Exchange (ETDEWEB)

    Fung, Jimmy [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Kenamond, Mark Andrew [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Burton, Donald E. [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Shashkov, Mikhail Jurievich [Los Alamos National Lab. (LANL), Los Alamos, NM (United States)

    2015-02-27

    In ALE simulations with moving meshes, mesh topology has a direct influence on feature representation and code robustness. In three-dimensional simulations, modeling spherical volumes and features is particularly challenging for a hydrodynamics code. Calculations on traditional spherical meshes (such as spin meshes) often lead to errors and symmetry breaking. Although the underlying differencing scheme may be modified to rectify this, the differencing scheme may not be accessible. This work documents the use of spherical geodesic meshes to mitigate solution-mesh coupling. These meshes are generated notionally by connecting geodesic surface meshes to produce triangular-prismatic volume meshes. This mesh topology is fundamentally different from traditional mesh topologies and displays superior qualities such as topological symmetry. This work describes the geodesic mesh topology as well as motivating demonstrations with the FLAG hydrocode.

  17. A Lightweight Model for Gear Mesh Dynamics Incorporating Variable Mesh Stiffness

    Directory of Open Access Journals (Sweden)

    Fokas Nikolaos

    2015-01-01

    Full Text Available Variable stiffness of the gear tooth mesh for a pair of spur gears is computed using an accurate lightweight mathematical formulation. This is used to simulate gear dynamic behavior. Gear eigenfrequencies are calculated for the SDOF system and correlated with gear physical properties and the effect of stiffness variation during a mesh cycle is studied.

  18. Applications of automatic mesh generation and adaptive methods in computational medicine

    Energy Technology Data Exchange (ETDEWEB)

    Schmidt, J.A.; Macleod, R.S. [Univ. of Utah, Salt Lake City, UT (United States); Johnson, C.R.; Eason, J.C. [Duke Univ., Durham, NC (United States)

    1995-12-31

    Important problems in Computational Medicine exist that can benefit from the implementation of adaptive mesh refinement techniques. Biological systems are so inherently complex that only efficient models running on state of the art hardware can begin to simulate reality. To tackle the complex geometries associated with medical applications we present a general purpose mesh generation scheme based upon the Delaunay tessellation algorithm and an iterative point generator. In addition, automatic, two- and three-dimensional adaptive mesh refinement methods are presented that are derived from local and global estimates of the finite element error. Mesh generation and adaptive refinement techniques are utilized to obtain accurate approximations of bioelectric fields within anatomically correct models of the heart and human thorax. Specifically, we explore the simulation of cardiac defibrillation and the general forward and inverse problems in electrocardiography (ECG). Comparisons between uniform and adaptive refinement techniques are made to highlight the computational efficiency and accuracy of adaptive methods in the solution of field problems in computational medicine.

  19. Multiple Staggered Mesh Ewald: Boosting the Accuracy of the Smooth Particle Mesh Ewald Method

    CERN Document Server

    Wang, Han; Fang, Jun

    2016-01-01

    The smooth particle mesh Ewald (SPME) method is the standard method for computing the electrostatic interactions in the molecular simulations. In this work, the multiple staggered mesh Ewald (MSME) method is proposed to boost the accuracy of the SPME method. Unlike the SPME that achieves higher accuracy by refining the mesh, the MSME improves the accuracy by averaging the standard SPME forces computed on, e.g. $M$, staggered meshes. We prove, from theoretical perspective, that the MSME is as accurate as the SPME, but uses $M^2$ times less mesh points in a certain parameter range. In the complementary parameter range, the MSME is as accurate as the SPME with twice of the interpolation order. The theoretical conclusions are numerically validated both by a uniform and uncorrelated charge system, and by a three-point-charge water system that is widely used as solvent for the bio-macromolecules.

  20. Advanced 3D mesh manipulation in stereolithographic files and post-print processing for the manufacturing of patient-specific vascular flow phantoms

    Science.gov (United States)

    O'Hara, Ryan P.; Chand, Arpita; Vidiyala, Sowmya; Arechavala, Stacie M.; Mitsouras, Dimitrios; Rudin, Stephen; Ionita, Ciprian N.

    2016-03-01

    Complex vascular anatomies can cause the failure of image-guided endovascular procedures. 3D printed patient-specific vascular phantoms provide clinicians and medical device companies the ability to preemptively plan surgical treatments, test the likelihood of device success, and determine potential operative setbacks. This research aims to present advanced mesh manipulation techniques of stereolithographic (STL) files segmented from medical imaging and post-print surface optimization to match physiological vascular flow resistance. For phantom design, we developed three mesh manipulation techniques. The first method allows outlet 3D mesh manipulations to merge superfluous vessels into a single junction, decreasing the number of flow outlets and making it feasible to include smaller vessels. Next we introduced Boolean operations to eliminate the need to manually merge mesh layers and eliminate errors of mesh self-intersections that previously occurred. Finally we optimize support addition to preserve the patient anatomical geometry. For post-print surface optimization, we investigated various solutions and methods to remove support material and smooth the inner vessel surface. Solutions of chloroform, alcohol and sodium hydroxide were used to process various phantoms and hydraulic resistance was measured and compared with values reported in literature. The newly mesh manipulation methods decrease the phantom design time by 30 - 80% and allow for rapid development of accurate vascular models. We have created 3D printed vascular models with vessel diameters less than 0.5 mm. The methods presented in this work could lead to shorter design time for patient specific phantoms and better physiological simulations.

  1. Spectral mesh segmentation

    OpenAIRE

    Liu, Rong

    2009-01-01

    Polygonal meshes are ubiquitous in geometric modeling. They are widely used in many applications, such as computer games, computer-aided design, animation, and visualization. One of the important problems in mesh processing and analysis is segmentation, where the goal is to partition a mesh into segments to suit the particular application at hand. In this thesis we study structural-level mesh segmentation, which seeks to decompose a given 3D shape into parts according to human intuition. We t...

  2. Quadratically consistent projection from particles to mesh

    CERN Document Server

    Duque, Daniel

    2016-01-01

    The advantage of particle Lagrangian methods in computational fluid dynamics is that advection is accurately modeled. However, this complicates the calculation of space derivatives. If a mesh is employed, it must be updated at each time step. On the other hand, fixed mesh, Eulerian, formulations benefit from the mesh being defined at the beginning of the simulation, but feature non-linear advection terms. It therefore seems natural to combine the two approaches, using a fixed mesh to perform calculations related to space derivatives, and using the particles to advect the information with time. The idea of combining Lagrangian particles and a fixed mesh goes back to Particle-in-Cell methods, and is here considered within the context of the finite element method (FEM) for the fixed mesh, and the particle FEM (pFEM) for the particles. Our results, in agreement with recent works, show that interpolation ("projection") errors, especially from particles to mesh, are the culprits of slow convergence of the method if...

  3. Grid adaptation using chimera composite overlapping meshes

    Science.gov (United States)

    Kao, Kai-Hsiung; Liou, Meng-Sing; Chow, Chuen-Yen

    1994-01-01

    The objective of this paper is to perform grid adaptation using composite overlapping meshes in regions of large gradient to accurately capture the salient features during computation. The chimera grid scheme, a multiple overset mesh technique, is used in combination with a Navier-Stokes solver. The numerical solution is first converged to a steady state based on an initial coarse mesh. Solution-adaptive enhancement is then performed by using a secondary fine grid system which oversets on top of the base grid in the high-gradient region, but without requiring the mesh boundaries to join in any special way. Communications through boundary interfaces between those separated grids are carried out using trilinear interpolation. Application to the Euler equations for shock reflections and to shock wave/boundary layer interaction problem are tested. With the present method, the salient features are well-resolved.

  4. Grid adaption using Chimera composite overlapping meshes

    Science.gov (United States)

    Kao, Kai-Hsiung; Liou, Meng-Sing; Chow, Chuen-Yen

    1993-01-01

    The objective of this paper is to perform grid adaptation using composite over-lapping meshes in regions of large gradient to capture the salient features accurately during computation. The Chimera grid scheme, a multiple overset mesh technique, is used in combination with a Navier-Stokes solver. The numerical solution is first converged to a steady state based on an initial coarse mesh. Solution-adaptive enhancement is then performed by using a secondary fine grid system which oversets on top of the base grid in the high-gradient region, but without requiring the mesh boundaries to join in any special way. Communications through boundary interfaces between those separated grids are carried out using tri-linear interpolation. Applications to the Euler equations for shock reflections and to a shock wave/boundary layer interaction problem are tested. With the present method, the salient features are well resolved.

  5. Spacetime Meshing for Discontinuous Galerkin Methods

    CERN Document Server

    Thite, Shripad Vidyadhar

    2008-01-01

    Spacetime discontinuous Galerkin (SDG) finite element methods are used to solve such PDEs involving space and time variables arising from wave propagation phenomena in important applications in science and engineering. To support an accurate and efficient solution procedure using SDG methods and to exploit the flexibility of these methods, we give a meshing algorithm to construct an unstructured simplicial spacetime mesh over an arbitrary simplicial space domain. Our algorithm is the first spacetime meshing algorithm suitable for efficient solution of nonlinear phenomena in anisotropic media using novel discontinuous Galerkin finite element methods for implicit solutions directly in spacetime. Given a triangulated d-dimensional Euclidean space domain M (a simplicial complex) and initial conditions of the underlying hyperbolic spacetime PDE, we construct an unstructured simplicial mesh of the (d+1)-dimensional spacetime domain M x [0,infinity). Our algorithm uses a near-optimal number of spacetime elements, ea...

  6. ON MOBILE MESH NETWORKS

    OpenAIRE

    Namiot, Dmitry

    2015-01-01

    With the advances in mobile computing technologies and the growth of the Net, mobile mesh networks are going through a set of important evolutionary steps. In this paper, we survey architectural aspects of mobile mesh networks and their use cases and deployment models. Also, we survey challenging areas of mobile mesh networks and describe our vision of promising mobile services. This paper presents a basic introductory material for Masters of Open Information Technologies Lab, interested in m...

  7. Anatomic Total Shoulder System

    Medline Plus

    Full Text Available GLOBAL AP ANATOMIC TOTAL SHOULDER SYSTEM METHODIST HOSPITAL PHILADELPHIA, PA April 17, 2008 00:00:10 ANNOUNCER: ... you'll be able to watch a live global AP anatomic total shoulder surgery from Methodist Hospital ...

  8. A 3D Tetrahedral Mesh Generator for Seismic Problems

    NARCIS (Netherlands)

    Kononov, A.; Minisini, S.; Zhebel, E.; Mulder, W.A.

    2012-01-01

    Finite-element modelling of seismic wave propagation on tetrahedra requires meshes that accurately follow interfaces between impedance contrasts or surface topography and have element sizes proportional to the local velocity. We explain a mesh generation approach by example. Starting from a finite-d

  9. An Adaptive Mesh Algorithm: Mapping the Mesh Variables

    Energy Technology Data Exchange (ETDEWEB)

    Scannapieco, Anthony J. [Los Alamos National Lab. (LANL), Los Alamos, NM (United States)

    2016-07-25

    Both thermodynamic and kinematic variables must be mapped. The kinematic variables are defined on a separate kinematic mesh; it is the duel mesh to the thermodynamic mesh. The map of the kinematic variables is done by calculating the contributions of kinematic variables on the old thermodynamic mesh, mapping the kinematic variable contributions onto the new thermodynamic mesh and then synthesizing the mapped kinematic variables on the new kinematic mesh. In this document the map of the thermodynamic variables will be described.

  10. Anatomic Eponyms in Neuroradiology: Head and Neck.

    Science.gov (United States)

    Bunch, Paul M

    2016-10-01

    In medicine, an eponym is a word-typically referring to an anatomic structure, disease, or syndrome-that is derived from a person's name. Medical eponyms are ubiquitous and numerous. They are also at times controversial. Eponyms reflect medicine's rich and colorful history and can be useful for concisely conveying complex concepts. Familiarity with eponyms facilitates correct usage and accurate communication. In this article, 22 eponyms used to describe anatomic structures of the head and neck are discussed. For each structure, the author first provides a biographical account of the individual for whom the structure is named. An anatomic description and brief discussion of the structure's clinical relevance follow. PMID:27283070

  11. Wireless mesh networks

    CERN Document Server

    Held, Gilbert

    2005-01-01

    Wireless mesh networking is a new technology that has the potential to revolutionize how we access the Internet and communicate with co-workers and friends. Wireless Mesh Networks examines the concept and explores its advantages over existing technologies. This book explores existing and future applications, and examines how some of the networking protocols operate.The text offers a detailed analysis of the significant problems affecting wireless mesh networking, including network scale issues, security, and radio frequency interference, and suggests actual and potential solutions for each pro

  12. Mesh implants: An overview of crucial mesh parameters

    Institute of Scientific and Technical Information of China (English)

    Lei-Ming; Zhu; Philipp; Schuster; Uwe; Klinge

    2015-01-01

    Hernia repair is one of the most frequently performed surgical interventions that use mesh implants. This article evaluates crucial mesh parameters to facilitate selection of the most appropriate mesh implant, considering raw materials, mesh composition, structure parameters and mechanical parameters. A literature review was performed using the Pub Med database. The most important mesh parameters in the selection of a mesh implant are the raw material, structural parameters and mechanical parameters, which should match the physiological conditions. The structural parameters, especially the porosity, are the most important predictors of the biocompatibility performance of synthetic meshes. Meshes with large pores exhibit less inflammatory infiltrate, connective tissue and scar bridging, which allows increased soft tissue ingrowth. The raw material and combination of raw materials of the used mesh, including potential coatings and textile design, strongly impact the inflammatory reaction to the mesh. Synthetic meshes made from innovative polymers combined with surface coating have been demonstrated to exhibit advantageous behavior in specialized fields. Monofilament, largepore synthetic meshes exhibit advantages. The value of mesh classification based on mesh weight seems to be overestimated. Mechanical properties of meshes, such as anisotropy/isotropy, elasticity and tensile strength, are crucial parameters for predicting mesh performance after implantation.

  13. Urogynecologic Surgical Mesh Implants

    Science.gov (United States)

    ... be used for urogynecologic procedures, including repair of pelvic organ prolapse (POP) and stress urinary incontinence (SUI). It is ... associated with surgical mesh for transvaginal repair of pelvic organ prolapse 513(e) Proposed Order for Reclassification of Surgical ...

  14. Geometrically Consistent Mesh Modification

    KAUST Repository

    Bonito, A.

    2010-01-01

    A new paradigm of adaptivity is to execute refinement, coarsening, and smoothing of meshes on manifolds with incomplete information about their geometry and yet preserve position and curvature accuracy. We refer to this collectively as geometrically consistent (GC) mesh modification. We discuss the concept of discrete GC, show the failure of naive approaches, and propose and analyze a simple algorithm that is GC and accuracy preserving. © 2010 Society for Industrial and Applied Mathematics.

  15. Polygon mesh processing

    CERN Document Server

    Botsch, Mario; Pauly, Mark; Alliez, Pierre; Levy, Bruno

    2010-01-01

    Geometry processing, or mesh processing, is a fast-growing area of research that uses concepts from applied mathematics, computer science, and engineering to design efficient algorithms for the acquisition, reconstruction, analysis, manipulation, simulation, and transmission of complex 3D models. Applications of geometry processing algorithms already cover a wide range of areas from multimedia, entertainment, and classical computer-aided design, to biomedical computing, reverse engineering, and scientific computing. Over the last several years, triangle meshes have become increasingly popular,

  16. To mesh or not to mesh: a review of pelvic organ reconstructive surgery

    Directory of Open Access Journals (Sweden)

    Dällenbach P

    2015-04-01

    Full Text Available Patrick Dällenbach Department of Gynecology and Obstetrics, Division of Gynecology, Urogynecology Unit, Geneva University Hospitals, Geneva, Switzerland Abstract: Pelvic organ prolapse (POP is a major health issue with a lifetime risk of undergoing at least one surgical intervention estimated at close to 10%. In the 1990s, the risk of reoperation after primary standard vaginal procedure was estimated to be as high as 30% to 50%. In order to reduce the risk of relapse, gynecological surgeons started to use mesh implants in pelvic organ reconstructive surgery with the emergence of new complications. Recent studies have nevertheless shown that the risk of POP recurrence requiring reoperation is lower than previously estimated, being closer to 10% rather than 30%. The development of mesh surgery – actively promoted by the marketing industry – was tremendous during the past decade, and preceded any studies supporting its benefit for our patients. Randomized trials comparing the use of mesh to native tissue repair in POP surgery have now shown better anatomical but similar functional outcomes, and meshes are associated with more complications, in particular for transvaginal mesh implants. POP is not a life-threatening condition, but a functional problem that impairs quality of life for women. The old adage “primum non nocere” is particularly appropriate when dealing with this condition which requires no treatment when asymptomatic. It is currently admitted that a certain degree of POP is physiological with aging when situated above the landmark of the hymen. Treatment should be individualized and the use of mesh needs to be selective and appropriate. Mesh implants are probably an important tool in pelvic reconstructive surgery, but the ideal implant has yet to be found. The indications for its use still require caution and discernment. This review explores the reasons behind the introduction of mesh augmentation in POP surgery, and aims to

  17. GRChombo: Numerical relativity with adaptive mesh refinement

    Science.gov (United States)

    Clough, Katy; Figueras, Pau; Finkel, Hal; Kunesch, Markus; Lim, Eugene A.; Tunyasuvunakool, Saran

    2015-12-01

    In this work, we introduce {\\mathtt{GRChombo}}: a new numerical relativity code which incorporates full adaptive mesh refinement (AMR) using block structured Berger-Rigoutsos grid generation. The code supports non-trivial 'many-boxes-in-many-boxes' mesh hierarchies and massive parallelism through the message passing interface. {\\mathtt{GRChombo}} evolves the Einstein equation using the standard BSSN formalism, with an option to turn on CCZ4 constraint damping if required. The AMR capability permits the study of a range of new physics which has previously been computationally infeasible in a full 3 + 1 setting, while also significantly simplifying the process of setting up the mesh for these problems. We show that {\\mathtt{GRChombo}} can stably and accurately evolve standard spacetimes such as binary black hole mergers and scalar collapses into black holes, demonstrate the performance characteristics of our code, and discuss various physics problems which stand to benefit from the AMR technique.

  18. An automated approach for solution based mesh adaptation to enhance numerical accuracy for a given number of grid cells

    NARCIS (Netherlands)

    Lucas, P.; Van Zuijlen, A.H.; Bijl, H.

    2009-01-01

    Mesh adaptation is a fairly established tool to obtain numerically accurate solutions for flow problems. Computational efficiency is, however, not always guaranteed for the adaptation strategies found in literature. Typically excessive mesh growth diminishes the potential efficiency gain. This paper

  19. 3D harmonic phase tracking with anatomical regularization.

    Science.gov (United States)

    Zhou, Yitian; Bernard, Olivier; Saloux, Eric; Manrique, Alain; Allain, Pascal; Makram-Ebeid, Sherif; De Craene, Mathieu

    2015-12-01

    This paper presents a novel algorithm that extends HARP to handle 3D tagged MRI images. HARP results were regularized by an original regularization framework defined in an anatomical space of coordinates. In the meantime, myocardium incompressibility was integrated in order to correct the radial strain which is reported to be more challenging to recover. Both the tracking and regularization of LV displacements were done on a volumetric mesh to be computationally efficient. Also, a window-weighted regression method was extended to cardiac motion tracking which helps maintain a low complexity even at finer scales. On healthy volunteers, the tracking accuracy was found to be as accurate as the best candidates of a recent benchmark. Strain accuracy was evaluated on synthetic data, showing low bias and strain errors under 5% (excluding outliers) for longitudinal and circumferential strains, while the second and third quartiles of the radial strain errors are in the (-5%,5%) range. In clinical data, strain dispersion was shown to correlate with the extent of transmural fibrosis. Also, reduced deformation values were found inside infarcted segments. PMID:26363844

  20. Numerical modeling of seismic waves using frequency-adaptive meshes

    Science.gov (United States)

    Hu, Jinyin; Jia, Xiaofeng

    2016-08-01

    An improved modeling algorithm using frequency-adaptive meshes is applied to meet the computational requirements of all seismic frequency components. It automatically adopts coarse meshes for low-frequency computations and fine meshes for high-frequency computations. The grid intervals are adaptively calculated based on a smooth inversely proportional function of grid size with respect to the frequency. In regular grid-based methods, the uniform mesh or non-uniform mesh is used for frequency-domain wave propagators and it is fixed for all frequencies. A too coarse mesh results in inaccurate high-frequency wavefields and unacceptable numerical dispersion; on the other hand, an overly fine mesh may cause storage and computational overburdens as well as invalid propagation angles of low-frequency wavefields. Experiments on the Padé generalized screen propagator indicate that the Adaptive mesh effectively solves these drawbacks of regular fixed-mesh methods, thus accurately computing the wavefield and its propagation angle in a wide frequency band. Several synthetic examples also demonstrate its feasibility for seismic modeling and migration.

  1. Optimizing triangular mesh generation from range images

    Science.gov (United States)

    Lu, Tianyu; Yun, David Y.

    2000-03-01

    An algorithm for the automatic reconstruction of triangular mesh surface model form range images is presented. The optimal piecewise linear surface approximation problem is defined as: given a set S of points uniformly sampled from a vibrate function f(x,y) on a rectangular grid of dimension W X H, find a minimum triangular mesh approximating the surface with vertices anchored at a subset S' of S, such that the deviation at any sample point is within a given bound of (epsilon) > 0. The algorithm deploys a multi- agent resource planning approach to achieve adaptive, accurate and concise piecewise linear approximation using the L-(infinity) norm. The resulting manifold triangular mesh can be directly used as 3D rendering model for visualization with controllable and guaranteed quality. Due to this dual optimality, the algorithm achieves both storage efficiency and visual quality. The error control scheme further facilitates the construction of models in multiple levels of details, which is desirable in animation and virtual reality moving scenes. Experiments with various benchmark range images form smooth functional surfaces to satellite terrain images yield succinct, accurate and visually pleasant triangular meshes. Furthermore, the independence and multiplicity of agents suggest a natural parallelism for triangulation computation, which provides a promising solution for the real-time exploration of large data sets.

  2. Anatomically Plausible Surface Alignment and Reconstruction

    DEFF Research Database (Denmark)

    Paulsen, Rasmus R.; Larsen, Rasmus

    2010-01-01

    With the increasing clinical use of 3D surface scanners, there is a need for accurate and reliable algorithms that can produce anatomically plausible surfaces. In this paper, a combined method for surface alignment and reconstruction is proposed. It is based on an implicit surface representation...

  3. Documentation for MeshKit - Reactor Geometry (&mesh) Generator

    Energy Technology Data Exchange (ETDEWEB)

    Jain, Rajeev [Argonne National Lab. (ANL), Argonne, IL (United States); Mahadevan, Vijay [Argonne National Lab. (ANL), Argonne, IL (United States)

    2015-09-30

    This report gives documentation for using MeshKit’s Reactor Geometry (and mesh) Generator (RGG) GUI and also briefly documents other algorithms and tools available in MeshKit. RGG is a program designed to aid in modeling and meshing of complex/large hexagonal and rectilinear reactor cores. RGG uses Argonne’s SIGMA interfaces, Qt and VTK to produce an intuitive user interface. By integrating a 3D view of the reactor with the meshing tools and combining them into one user interface, RGG streamlines the task of preparing a simulation mesh and enables real-time feedback that reduces accidental scripting mistakes that could waste hours of meshing. RGG interfaces with MeshKit tools to consolidate the meshing process, meaning that going from model to mesh is as easy as a button click. This report is designed to explain RGG v 2.0 interface and provide users with the knowledge and skills to pilot RGG successfully. Brief documentation of MeshKit source code, tools and other algorithms available are also presented for developers to extend and add new algorithms to MeshKit. RGG tools work in serial and parallel and have been used to model complex reactor core models consisting of conical pins, load pads, several thousands of axially varying material properties of instrumentation pins and other interstices meshes.

  4. Cosmology on a Mesh

    Science.gov (United States)

    Gill, Stuart P. D.; Knebe, Alexander; Gibson, Brad K.; Flynn, Chris; Ibata, Rodrigo A.; Lewis, Geraint F.

    2003-04-01

    An adaptive multi grid approach to simulating the formation of structure from collisionless dark matter is described. MLAPM (Multi-Level Adaptive Particle Mesh) is one of the most efficient serial codes available on the cosmological "market" today. As part of Swinburne University's role in the development of the Square Kilometer Array, we are implementing hydrodynamics, feedback, and radiative transfer within the MLAPM adaptive mesh, in order to simulate baryonic processes relevant to the interstellar and intergalactic media at high redshift. We will outline our progress to date in applying the existing MLAPM to a study of the decay of satellite galaxies within massive host potentials.

  5. Trocar-guided total tension-free vaginal mesh repair of post-hysterectomy vaginal vault prolapse.

    NARCIS (Netherlands)

    Milani, A.L.; Withagen, M.I.J.; Vierhout, M.E.

    2009-01-01

    INTRODUCTION AND HYPOTHESIS: The objective of this study was to report 1 year anatomical and functional outcomes of trocar-guided total tension-free vaginal mesh (Prolift) repair for post-hysterectomy vaginal vault prolapse with one continuous piece of polypropylene mesh. METHODS: We conducted a pro

  6. Anatomic Total Shoulder System

    Medline Plus

    Full Text Available GLOBAL AP ANATOMIC TOTAL SHOULDER SYSTEM METHODIST HOSPITAL PHILADELPHIA, PA April 17, 2008 00:00:10 ANNOUNCER: DePuy Orthopedics is continually advancing the standard of orthopedic patient care. In a few ...

  7. Anatomic Total Shoulder System

    Medline Plus

    Full Text Available ... to a patient's unique anatomical makeup. Dr. Gerald R. Williams, Jr., a shoulder specialist from the Rothman ... That might help. Could you raise the O.R. table, please? 00:28:35 WOMAN: Can you ...

  8. Anatomic Total Shoulder System

    Medline Plus

    Full Text Available GLOBAL AP ANATOMIC TOTAL SHOULDER SYSTEM METHODIST HOSPITAL PHILADELPHIA, PA April 17, 2008 00:00:10 ANNOUNCER: DePuy Orthopedics is continually advancing the standard of orthopedic patient ...

  9. Difference schemes on non-uniform mesh and their application

    Institute of Scientific and Technical Information of China (English)

    MA Yanwen; GAO Hui; FU Dexun; LI Xinliang

    2004-01-01

    High order accurate schemes are needed to simulate the multi-scale complex flow fields to get fine structures in simulation of the complex flows with large gradient of fluid parameters near the wall, and schemes on non-uniform mesh are desirable for many CFD (computational fluid dynamics) workers. The construction methods of difference approximations and several difference approximations on non-uniform mesh are presented. The accuracy of the methods and the influence of stretch ratio of the neighbor mesh increment on accuracy are discussed. Some comments on these methods are given, and comparison of the accuracy of the results obtained by schemes based on both non-uniform mesh and coordinate transformation is made, and some numerical examples with non-uniform mesh are presented.

  10. Volume-conserving mesh smoothing for front-tracking methods

    International Nuclear Information System (INIS)

    Among the various direct numerical simulation (DNS) methods dedicated to multiphase flow, the front-tracking methods that use a Lagrangian mesh to describe explicitly the interfaces are generally considered as a very accurate and complex method. In this family of methods, while a fine Lagrangian mesh is desirable for a better representation of the interfacial area, the surface forces and the bubble or droplet volume, one cannot arbitrarily choose the Lagrangian mesh size. Indeed, the Lagrangian mesh displacement algorithm is unstable if the number of Lagrangian degrees of freedom does not match the number of involved Eulerian velocity points. As a consequence, in traditional front-tracking implementations, an accurate description of the interfaces is expensive in terms of Eulerian mesh cells. We demonstrate that a front-tracking interface smoothing (FTIS) method can reduce the constraints on the mesh sizes. It consists in damping the highest spatial frequency components of the Lagrangian mesh to compensate for the lack of Eulerian velocity points. The test case of fundamental proper frequency of a bubble proves the validity of the FTIS method. An example of a 3D-bubble rising shows the interest and the potential applications of the FTIS method. (authors)

  11. Seismic Wave Simulation for Complex Rheologies on Unstructured Meshes

    OpenAIRE

    de la Puente, Josep

    2008-01-01

    The possibility of using accurate numerical methods to simulate seismic wavefields on unstructured meshes for complex rheologies is explored. In particular, the Discontinuous Galerkin (DG) finite element method for seismic wave propagation is extended to the rheological types of viscoelasticity, anisotropy and poroelasticity. First is presented the DG method for the elastic isotropic case on tetrahedral unstructured meshes. Then an extension to viscoelastic wave propagation based upon a Gener...

  12. Cable-Stiffened Pantographic Deployable Structures Part 2: Mesh Reflector

    OpenAIRE

    You, Z.; Pellegrino, S.

    1997-01-01

    The general concept of deployable structures based on pantographs that are deployed and stiffened by means of cables is applied to the design of the support structure for a large mesh reflector. The two main components of this structure are a cable-stiffened pantographic ring that deploys and pretensions a cable network that, in turn, provides a series of stiff, geometrically accurate support points to which a reflective wire mesh or flexible membrane would be connected. The pantographic ring...

  13. Mesh generation technology for nuclear reactor simulation; barriers and opportunities

    International Nuclear Information System (INIS)

    Mesh generation in support of nuclear reactor simulation has much in common with the requirements of other application areas, such as computational fluid dynamics (CFD). Indeed, fluid dynamics analysis of the coolant behavior inside the reactor core is an internal flow problem that requires the resolution of spatial and temporal variations in the flow caused by complex component configurations, fluids/structure interaction, turbulence, and thermal heating of the coolant. Typical concerns of meshing complex geometries; the use of hexahedral vs. tetrahedral elements, element geometric quality, mesh smoothness, use of anisotropic elements in the thermal boundary layer, etc., are all considerations important to the reactor meshing problem. Reactor meshing begins to become more specialized as the need to employ reactor simulation as a predictive design and safety analysis capability grows in importance. First, a predictive capability will require more precise physical models to be included, and these models will need to be supported by a computational science framework that will allow them to be accurately approximated both spatially and temporally during the reactor core analysis. Both the multiphysical nature of the composite reactor model and details of the physics algorithms themselves will place new requirements on the meshing process needed to support multidimensional reactor simulation. This article discusses the current state of meshing technology applied to reactor simulation and examines a set of issues that are important in the generation of high-quality reactor meshes today and in the future

  14. Electrical properties analysis of wire mesh for mesh reflectors

    Science.gov (United States)

    Li, Tuanjie; Su, Jinguo

    2011-07-01

    The knitted wire mesh is often used as a reflecting surface of large deployable antennas. Different weaves have different electrical properties and it is very important and necessary to research the method of analyzing the electrical properties of wire mesh. This paper has developed an effective method to address the problem. First, a periodic unit of wire model in actual complex mesh structure is converted into an equivalent strip model according to the correlation between strip width and wire diameter. The equivalent regular wire-grid unit of the strip model is derived from the equivalences between the wire-grid unit and the strip model in near and far fields. Then the regular wire-grid units are arranged to form an equivalent mesh surface with the corresponding weave pattern, so the electrical properties of the mesh surface are equivalent to those of the actual mesh structure. Through analyzing electrical properties of the mesh surface including amplitude difference, phase difference and reflecting loss, we can find out the electrical properties of the actual knitted wire mesh. The single satin mesh and a two-bar tricot mesh are used as examples to illustrate the method of electrical properties analysis of wire mesh.

  15. Metal-mesh lithography.

    Science.gov (United States)

    Tang, Zhao; Wei, Qingshan; Wei, Alexander

    2011-12-01

    Metal-mesh lithography (MML) is a practical hybrid of microcontact printing and capillary force lithography that can be applied over millimeter-sized areas with a high level of uniformity. MML can be achieved by blotting various inks onto substrates through thin copper grids, relying on preferential wetting and capillary interactions between template and substrate for pattern replication. The resulting mesh patterns, which are inverted relative to those produced by stenciling or serigraphy, can be reproduced with low micrometer resolution. MML can be combined with other surface chemistry and lift-off methods to create functional microarrays for diverse applications, such as periodic islands of gold nanorods and patterned corrals for fibroblast cell cultures.

  16. Mesh Algorithms for PDE with Sieve I: Mesh Distribution

    Directory of Open Access Journals (Sweden)

    Matthew G. Knepley

    2009-01-01

    Full Text Available We have developed a new programming framework, called Sieve, to support parallel numerical partial differential equation(s (PDE algorithms operating over distributed meshes. We have also developed a reference implementation of Sieve in C++ as a library of generic algorithms operating on distributed containers conforming to the Sieve interface. Sieve makes instances of the incidence relation, or arrows, the conceptual first-class objects represented in the containers. Further, generic algorithms acting on this arrow container are systematically used to provide natural geometric operations on the topology and also, through duality, on the data. Finally, coverings and duality are used to encode not only individual meshes, but all types of hierarchies underlying PDE data structures, including multigrid and mesh partitions. In order to demonstrate the usefulness of the framework, we show how the mesh partition data can be represented and manipulated using the same fundamental mechanisms used to represent meshes. We present the complete description of an algorithm to encode a mesh partition and then distribute a mesh, which is independent of the mesh dimension, element shape, or embedding. Moreover, data associated with the mesh can be similarly distributed with exactly the same algorithm. The use of a high level of abstraction within the Sieve leads to several benefits in terms of code reuse, simplicity, and extensibility. We discuss these benefits and compare our approach to other existing mesh libraries.

  17. Mesh Generation and Dynamic Mesh Management for KIVA.3V

    Institute of Scientific and Technical Information of China (English)

    LIU Yong-feng; ZHANG You-tong; XIONG Qing-hui

    2009-01-01

    To improve mesh quality for KIVA-3V a method has been developed for rapid mesh generation and dynamic mesh management with moving valves for internal combustion engines.Two phases are included in rapid mesh generation:the initial mesh generation and the mesh pre-treatment.In the second step (pre-treatment),the connectivity of those cells is generated by a new algorithm added to the KIVA-3V code after the initial mesh generated.In dynamic mesh management phase,a new rezoning algorithm is developed and the basic principle is that the rezoning starts from the moving part.The movement of the adjustment is treated as an "earth quake wave" propagating to the surrounding vertexes.The amount of coordinate adjustment of the surrounding vertexes is determined by the movement of the epicenter and the distance between the vertexes and the "epicenter".Finally,a real IC engine mesh is generated and managed according to the new method.It gives a new theory and a new method for creating and managing the mesh in IC engine.

  18. Anatomic Total Shoulder System

    Medline Plus

    Full Text Available ... advancing the standard of orthopedic patient care. In a few moments, you'll be able to watch a live global AP anatomic total shoulder surgery from Methodist Hospital in Philadelphia. A revolution in shoulder orthopedics, the Global AP gives ...

  19. Serial and parallel dynamic adaptation of general hybrid meshes

    Science.gov (United States)

    Kavouklis, Christos

    The Navier-Stokes equations are a standard mathematical representation of viscous fluid flow. Their numerical solution in three dimensions remains a computationally intensive and challenging task, despite recent advances in computer speed and memory. A strategy to increase accuracy of Navier-Stokes simulations, while maintaining computing resources to a minimum, is local refinement of the associated computational mesh in regions of large solution gradients and coarsening in regions where the solution does not vary appreciably. In this work we consider adaptation of general hybrid meshes for Computational Fluid Dynamics (CFD) applications. Hybrid meshes are composed of four types of elements; hexahedra, prisms, pyramids and tetrahedra, and have been proven a promising technology in accurately resolving fluid flow for complex geometries. The first part of this dissertation is concerned with the design and implementation of a serial scheme for the adaptation of general three dimensional hybrid meshes. We have defined 29 refinement types, for all four kinds of elements. The core of the present adaptation scheme is an iterative algorithm that flags mesh edges for refinement, so that the adapted mesh is conformal. Of primary importance is considered the design of a suitable dynamic data structure that facilitates refinement and coarsening operations and furthermore minimizes memory requirements. A special dynamic list is defined for mesh elements, in contrast with the usual tree structures. It contains only elements of the current adaptation step and minimal information that is utilized to reconstruct parent elements when the mesh is coarsened. In the second part of this work, a new parallel dynamic mesh adaptation and load balancing algorithm for general hybrid meshes is presented. Partitioning of a hybrid mesh reduces to partitioning of the corresponding dual graph. Communication among processors is based on the faces of the interpartition boundary. The distributed

  20. Notes on the Mesh Handler and Mesh Data Conversion

    International Nuclear Information System (INIS)

    At the outset of the development of the thermal-hydraulic code (THC), efforts have been made to utilize the recent technology of the computational fluid dynamics. Among many of them, the unstructured mesh approach was adopted to alleviate the restriction of the grid handling system. As a natural consequence, a mesh handler (MH) has been developed to manipulate the complex mesh data from the mesh generator. The mesh generator, Gambit, was chosen at the beginning of the development of the code. But a new mesh generator, Pointwise, was introduced to get more flexible mesh generation capability. An open source code, Paraview, was chosen as a post processor, which can handle unstructured as well as structured mesh data. Overall data processing system for THC is shown in Figure-1. There are various file formats to save the mesh data in the permanent storage media. A couple of dozen of file formats are found even in the above mentioned programs. A competent mesh handler should have the capability to import or export mesh data as many as possible formats. But, in reality, there are two aspects that make it difficult to achieve the competence. The first aspect to consider is the time and efforts to program the interface code. And the second aspect, which is even more difficult one, is the fact that many mesh data file formats are proprietary information. In this paper, some experience of the development of the format conversion programs will be presented. File formats involved are Gambit neutral format, Ansys-CFX grid file format, VTK legacy file format, Nastran format and CGNS

  1. New high quality adaptive mesh generator utilized in modelling plasma streamer propagation at atmospheric pressures

    Science.gov (United States)

    Papadakis, A. P.; Georghiou, G. E.; Metaxas, A. C.

    2008-12-01

    A new adaptive mesh generator has been developed and used in the analysis of high-pressure gas discharges, such as avalanches and streamers, reducing computational times and computer memory needs significantly. The new adaptive mesh generator developed, uses normalized error indicators, varying from 0 to 1, to guarantee optimal mesh resolution for all carriers involved in the analysis. Furthermore, it uses h- and r-refinement techniques such as mesh jiggling, edge swapping and node addition/removal to develop an element quality improvement algorithm that improves the mesh quality significantly and a fast and accurate algorithm for interpolation between meshes. Finally, the mesh generator is applied in the characterization of the transition from a single electron to the avalanche and streamer discharges in high-voltage, high-pressure gas discharges for dc 1 mm gaps, RF 1 cm point-plane gaps and parallel-plate 40 MHz configurations, in ambient atmospheric air.

  2. New high quality adaptive mesh generator utilized in modelling plasma streamer propagation at atmospheric pressures

    Energy Technology Data Exchange (ETDEWEB)

    Papadakis, A P [Department of Electrical Engineering, Frederick University Cyprus, 7 Y Frederickou Street, Palouriotissa, Nicosia 1036 (Cyprus); Georghiou, G E [Department of Electrical and Computer Engineering, University of Cyprus, 75 Kallipoleos, PO Box 20577, 1678, Nicosia (Cyprus); Metaxas, A C [St John' s College, University of Cambridge, Cambridge, CB2 1TP (United Kingdom)], E-mail: eng.ap@frederick.ac.cy, E-mail: geg@ucy.ac.cy, E-mail: acm33@cam.ac.uk

    2008-12-07

    A new adaptive mesh generator has been developed and used in the analysis of high-pressure gas discharges, such as avalanches and streamers, reducing computational times and computer memory needs significantly. The new adaptive mesh generator developed, uses normalized error indicators, varying from 0 to 1, to guarantee optimal mesh resolution for all carriers involved in the analysis. Furthermore, it uses h- and r-refinement techniques such as mesh jiggling, edge swapping and node addition/removal to develop an element quality improvement algorithm that improves the mesh quality significantly and a fast and accurate algorithm for interpolation between meshes. Finally, the mesh generator is applied in the characterization of the transition from a single electron to the avalanche and streamer discharges in high-voltage, high-pressure gas discharges for dc 1 mm gaps, RF 1 cm point-plane gaps and parallel-plate 40 MHz configurations, in ambient atmospheric air.

  3. An Adaptive Mesh Algorithm: Mesh Structure and Generation

    Energy Technology Data Exchange (ETDEWEB)

    Scannapieco, Anthony J. [Los Alamos National Lab. (LANL), Los Alamos, NM (United States)

    2016-06-21

    The purpose of Adaptive Mesh Refinement is to minimize spatial errors over the computational space not to minimize the number of computational elements. The additional result of the technique is that it may reduce the number of computational elements needed to retain a given level of spatial accuracy. Adaptive mesh refinement is a computational technique used to dynamically select, over a region of space, a set of computational elements designed to minimize spatial error in the computational model of a physical process. The fundamental idea is to increase the mesh resolution in regions where the physical variables are represented by a broad spectrum of modes in k-space, hence increasing the effective global spectral coverage of those physical variables. In addition, the selection of the spatially distributed elements is done dynamically by cyclically adjusting the mesh to follow the spectral evolution of the system. Over the years three types of AMR schemes have evolved; block, patch and locally refined AMR. In block and patch AMR logical blocks of various grid sizes are overlaid to span the physical space of interest, whereas in locally refined AMR no logical blocks are employed but locally nested mesh levels are used to span the physical space. The distinction between block and patch AMR is that in block AMR the original blocks refine and coarsen entirely in time, whereas in patch AMR the patches change location and zone size with time. The type of AMR described herein is a locally refi ned AMR. In the algorithm described, at any point in physical space only one zone exists at whatever level of mesh that is appropriate for that physical location. The dynamic creation of a locally refi ned computational mesh is made practical by a judicious selection of mesh rules. With these rules the mesh is evolved via a mesh potential designed to concentrate the nest mesh in regions where the physics is modally dense, and coarsen zones in regions where the physics is modally

  4. Synthesized Optimization of Triangular Mesh

    Institute of Scientific and Technical Information of China (English)

    HU Wenqiang; YANG Wenyu

    2006-01-01

    Triangular mesh is often used to describe geometric object as computed model in digital manufacture, thus the mesh model with both uniform triangular shape and excellent geometric shape is expected. But in fact, the optimization of triangular shape often is contrary with that of geometric shape. In this paper, one synthesized optimizing algorithm is presented through subdividing triangles to achieve the trade-off solution between the geometric and triangular shape optimization of mesh model. The result mesh with uniform triangular shape and excellent topology are obtained.

  5. Surface meshing with curvature convergence

    KAUST Repository

    Li, Huibin

    2014-06-01

    Surface meshing plays a fundamental role in graphics and visualization. Many geometric processing tasks involve solving geometric PDEs on meshes. The numerical stability, convergence rates and approximation errors are largely determined by the mesh qualities. In practice, Delaunay refinement algorithms offer satisfactory solutions to high quality mesh generations. The theoretical proofs for volume based and surface based Delaunay refinement algorithms have been established, but those for conformal parameterization based ones remain wide open. This work focuses on the curvature measure convergence for the conformal parameterization based Delaunay refinement algorithms. Given a metric surface, the proposed approach triangulates its conformal uniformization domain by the planar Delaunay refinement algorithms, and produces a high quality mesh. We give explicit estimates for the Hausdorff distance, the normal deviation, and the differences in curvature measures between the surface and the mesh. In contrast to the conventional results based on volumetric Delaunay refinement, our stronger estimates are independent of the mesh structure and directly guarantee the convergence of curvature measures. Meanwhile, our result on Gaussian curvature measure is intrinsic to the Riemannian metric and independent of the embedding. In practice, our meshing algorithm is much easier to implement and much more efficient. The experimental results verified our theoretical results and demonstrated the efficiency of the meshing algorithm. © 2014 IEEE.

  6. h-Adaptive Mesh Generation using Electric Field Intensity Value as a Criterion (in Japanese)

    OpenAIRE

    Toyonaga, Kiyomi; Cingoski, Vlatko; Kaneda, Kazufumi; Yamashita, Hideo

    1994-01-01

    Finite mesh divisions are essential to obtain accurate solution of two dimensional electric field analysis. It requires the technical knowledge to generate a suitable fine mesh divisions. In electric field problem, analysts are usually interested in the electric field intensity and its distribution. In order to obtain electric field intensity with high-accuracy, we have developed and adaptive mesh generator using electric field intensity value as a criterion.

  7. Early fetal anatomical sonography.

    LENUS (Irish Health Repository)

    Donnelly, Jennifer C

    2012-10-01

    Over the past decade, prenatal screening and diagnosis has moved from the second into the first trimester, with aneuploidy screening becoming both feasible and effective. With vast improvements in ultrasound technology, sonologists can now image the fetus in greater detail at all gestational ages. In the hands of experienced sonographers, anatomic surveys between 11 and 14 weeks can be carried out with good visualisation rates of many structures. It is important to be familiar with the normal development of the embryo and fetus, and to be aware of the major anatomical landmarks whose absence or presence may be deemed normal or abnormal depending on the gestational age. Some structural abnormalities will nearly always be detected, some will never be and some are potentially detectable depending on a number of factors.

  8. Standardized anatomic space for abdominal fat quantification

    Science.gov (United States)

    Tong, Yubing; Udupa, Jayaram K.; Torigian, Drew A.

    2014-03-01

    The ability to accurately measure subcutaneous adipose tissue (SAT) and visceral adipose tissue (VAT) from images is important for improved assessment and management of patients with various conditions such as obesity, diabetes mellitus, obstructive sleep apnea, cardiovascular disease, kidney disease, and degenerative disease. Although imaging and analysis methods to measure the volume of these tissue components have been developed [1, 2], in clinical practice, an estimate of the amount of fat is obtained from just one transverse abdominal CT slice typically acquired at the level of the L4-L5 vertebrae for various reasons including decreased radiation exposure and cost [3-5]. It is generally assumed that such an estimate reliably depicts the burden of fat in the body. This paper sets out to answer two questions related to this issue which have not been addressed in the literature. How does one ensure that the slices used for correlation calculation from different subjects are at the same anatomic location? At what anatomic location do the volumes of SAT and VAT correlate maximally with the corresponding single-slice area measures? To answer these questions, we propose two approaches for slice localization: linear mapping and non-linear mapping which is a novel learning based strategy for mapping slice locations to a standardized anatomic space so that same anatomic slice locations are identified in different subjects. We then study the volume-to-area correlations and determine where they become maximal. We demonstrate on 50 abdominal CT data sets that this mapping achieves significantly improved consistency of anatomic localization compared to current practice. Our results also indicate that maximum correlations are achieved at different anatomic locations for SAT and VAT which are both different from the L4-L5 junction commonly utilized.

  9. Reference Man anatomical model

    Energy Technology Data Exchange (ETDEWEB)

    Cristy, M.

    1994-10-01

    The 70-kg Standard Man or Reference Man has been used in physiological models since at least the 1920s to represent adult males. It came into use in radiation protection in the late 1940s and was developed extensively during the 1950s and used by the International Commission on Radiological Protection (ICRP) in its Publication 2 in 1959. The current Reference Man for Purposes of Radiation Protection is a monumental book published in 1975 by the ICRP as ICRP Publication 23. It has a wealth of information useful for radiation dosimetry, including anatomical and physiological data, gross and elemental composition of the body and organs and tissues of the body. The anatomical data includes specified reference values for an adult male and an adult female. Other reference values are primarily for the adult male. The anatomical data include much data on fetuses and children, although reference values are not established. There is an ICRP task group currently working on revising selected parts of the Reference Man document.

  10. Mesh Algorithms for PDE with Sieve I: Mesh Distribution

    CERN Document Server

    Knepley, Matthew G

    2009-01-01

    We have developed a new programming framework, called Sieve, to support parallel numerical PDE algorithms operating over distributed meshes. We have also developed a reference implementation of Sieve in C++ as a library of generic algorithms operating on distributed containers conforming to the Sieve interface. Sieve makes instances of the incidence relation, or \\emph{arrows}, the conceptual first-class objects represented in the containers. Further, generic algorithms acting on this arrow container are systematically used to provide natural geometric operations on the topology and also, through duality, on the data. Finally, coverings and duality are used to encode not only individual meshes, but all types of hierarchies underlying PDE data structures, including multigrid and mesh partitions. In order to demonstrate the usefulness of the framework, we show how the mesh partition data can be represented and manipulated using the same fundamental mechanisms used to represent meshes. We present the complete des...

  11. Risk Factors for Mesh Exposure after Transvaginal Mesh Surgery

    Institute of Scientific and Technical Information of China (English)

    Ke Niu; Yong-Xian Lu; Wen-Jie Shen; Ying-Hui Zhang; Wen-Ying Wang

    2016-01-01

    Background:Mesh exposure after surgery continues to be a clinical challenge for urogynecological surgeons.The purpose of this study was to explore the risk factors for polypropylene (PP) mesh exposure after transvaginal mesh (TVM) surgery.Methods:This study included 195 patients with advanced pelvic organ prolapse (POP),who underwent TVM from January 2004to December 2012 at the First Affiliated Hospital of Chinese PLA General Hospital.Clinical data were evaluated including patient's demography,TVM type,concomitant procedures,operation time,blood loss,postoperative morbidity,and mesh exposure.Mesh exposure was identified through postoperative vaginal examination.Statistical analysis was performed to identify risk factors for mesh exposure.Results:Two-hundred and nine transvaginal PP meshes were placed,including 194 in the anterior wall and 15 in the posterior wall.Concomitant tension-free vaginal tape was performed in 61 cases.The mean follow-up time was 35.1 ± 23.6 months.PP mesh exposure was identified in 32 cases (16.4%),with 31 in the anterior wall and 1 in the posterior wall.Significant difference was found in operating time and concomitant procedures between exposed and nonexposed groups (F =7.443,P =0.007;F =4.307,P =0.039,respectively).Binary logistic regression revealed that the number of concomitant procedures and operation time were risk factors for mesh exposure (P =0.001,P =0.043).Conclusion:Concomitant procedures and increased operating time increase the risk for postoperative mesh exposure in patients undergoing TVM surgery for POP.

  12. Parameterization for fitting triangular mesh

    Institute of Scientific and Technical Information of China (English)

    LIN Hongwei; WANG Guojin; LIU Ligang; BAO Hujun

    2006-01-01

    In recent years, with the development of 3D data acquisition equipments, the study on reverse engineering has become more and more important. However, the existing methods for parameterization can hardly ensure that the parametric domain is rectangular, and the parametric curve grid is regular. In order to overcome these limitations, we present a novel method for parameterization of triangular meshes in this paper. The basic idea is twofold: first, because the isotherms in the steady temperature do not intersect with each other, and are distributed uniformly, no singularity (fold-over) exists in the parameterization; second, a 3D harmonic equation is solved by the finite element method to obtain the steady temperature field on a 2D triangular mesh surface with four boundaries. Therefore, our proposed method avoids the embarrassment that it is impossible to solve the 2D quasi-harmonic equation on the 2D triangular mesh without the parametric values at mesh vertices. Furthermore, the isotherms on the temperature field are taken as a set of iso-parametric curves on the triangular mesh surface. The other set of iso-parametric curves can be obtained by connecting the points with the same chord-length on the isotherms sequentially. The obtained parametric curve grid is regular, and distributed uniformly, and can map the triangular mesh surface to the unit square domain with boundaries of mesh surface to boundaries of parametric domain, which ensures that the triangular mesh surface or point cloud can be fitted with the NURBS surface.

  13. An Improved Moving Mesh Algorithm

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    we consider an iterative algorithm of mesh optimization for finite element solution, and give an improved moving mesh strategy that reduces rapidly the complexity and cost of solving variational problems.A numerical result is presented for a 2-dimensional problem by the improved algorithm.

  14. A discretization of the multigroup PN radiative transfer equation on general meshes

    Science.gov (United States)

    Hermeline, F.

    2016-05-01

    We propose and study a finite volume method of discrete duality type for discretizing the multigroup PN approximation of radiative transfer equation on general meshes. This method is second order-accurate on a very large variety of meshes, stable under a Courant-Friedrichs-Lewy condition and it preserves naturally the diffusion asymptotic limit.

  15. An adaptive computation mesh for the solution of singular perturbation problems

    Science.gov (United States)

    Brackbill, J. U.; Saltzman, J.

    1980-01-01

    In singular perturbation problems, control of zone size variation can affect the effort required to obtain accurate, numerical solutions of finite difference equations. The mesh is generated by the solution of potential equations. Numerical results for a singular perturbation problem in two dimensions are presented. The mesh was used in calculations of resistive magnetohydrodynamic flow in two dimensions.

  16. Adaptive and Unstructured Mesh Cleaving

    Science.gov (United States)

    Bronson, Jonathan R.; Sastry, Shankar P.; Levine, Joshua A.; Whitaker, Ross T.

    2015-01-01

    We propose a new strategy for boundary conforming meshing that decouples the problem of building tetrahedra of proper size and shape from the problem of conforming to complex, non-manifold boundaries. This approach is motivated by the observation that while several methods exist for adaptive tetrahedral meshing, they typically have difficulty at geometric boundaries. The proposed strategy avoids this conflict by extracting the boundary conforming constraint into a secondary step. We first build a background mesh having a desired set of tetrahedral properties, and then use a generalized stenciling method to divide, or “cleave”, these elements to get a set of conforming tetrahedra, while limiting the impacts cleaving has on element quality. In developing this new framework, we make several technical contributions including a new method for building graded tetrahedral meshes as well as a generalization of the isosurface stuffing and lattice cleaving algorithms to unstructured background meshes. PMID:26137171

  17. Anatomical imaging for radiotherapy

    Energy Technology Data Exchange (ETDEWEB)

    Evans, Philip M [Joint Physics Department, Institute of Cancer Research and Royal Marsden NHS Foundation Trust, Downs Road, Sutton, Surrey SM2 5PT (United Kingdom)], E-mail: phil.evans@icr.ac.uk

    2008-06-21

    The goal of radiation therapy is to achieve maximal therapeutic benefit expressed in terms of a high probability of local control of disease with minimal side effects. Physically this often equates to the delivery of a high dose of radiation to the tumour or target region whilst maintaining an acceptably low dose to other tissues, particularly those adjacent to the target. Techniques such as intensity modulated radiotherapy (IMRT), stereotactic radiosurgery and computer planned brachytherapy provide the means to calculate the radiation dose delivery to achieve the desired dose distribution. Imaging is an essential tool in all state of the art planning and delivery techniques: (i) to enable planning of the desired treatment, (ii) to verify the treatment is delivered as planned and (iii) to follow-up treatment outcome to monitor that the treatment has had the desired effect. Clinical imaging techniques can be loosely classified into anatomic methods which measure the basic physical characteristics of tissue such as their density and biological imaging techniques which measure functional characteristics such as metabolism. In this review we consider anatomical imaging techniques. Biological imaging is considered in another article. Anatomical imaging is generally used for goals (i) and (ii) above. Computed tomography (CT) has been the mainstay of anatomical treatment planning for many years, enabling some delineation of soft tissue as well as radiation attenuation estimation for dose prediction. Magnetic resonance imaging is fast becoming widespread alongside CT, enabling superior soft-tissue visualization. Traditionally scanning for treatment planning has relied on the use of a single snapshot scan. Recent years have seen the development of techniques such as 4D CT and adaptive radiotherapy (ART). In 4D CT raw data are encoded with phase information and reconstructed to yield a set of scans detailing motion through the breathing, or cardiac, cycle. In ART a set of

  18. 3D Mesh Compression and Transmission for Mobile Robotic Applications

    Directory of Open Access Journals (Sweden)

    Bailin Yang

    2016-01-01

    Full Text Available Mobile robots are useful for environment exploration and rescue operations. In such applications, it is crucial to accurately analyse and represent an environment, providing appropriate inputs for motion planning in order to support robot navigation and operations. 2D mapping methods are simple but cannot handle multilevel or multistory environments. To address this problem, 3D mapping methods generate structural 3D representations of the robot operating environment and its objects by 3D mesh reconstruction. However, they face the challenge of efficiently transmitting those 3D representations to system modules for 3D mapping, motion planning, and robot operation visualization. This paper proposes a quality-driven mesh compression and transmission method to address this. Our method is efficient, as it compresses a mesh by quantizing its transformed vertices without the need to spend time constructing an a-priori structure over the mesh. A visual distortion function is developed to govern the level of quantization, allowing mesh transmission to be controlled under different network conditions or time constraints. Our experiments demonstrate how the visual quality of a mesh can be manipulated by the visual distortion function.

  19. Rich: Open Source Hydrodynamic Simulation on a Moving Voronoi Mesh

    CERN Document Server

    Yalinewich, Almog; Sari, Re'em

    2014-01-01

    We present here RICH, a state of the art 2D hydrodynamic code based on Godunov's method, on an unstructured moving mesh (the acronym stands for Racah Institute Computational Hydrodynamics). This code is largely based on the code AREPO. It differs from AREPO in the interpolation and time advancement scheme as well as a novel parallelization scheme based on Voronoi tessellation. Using our code we study the pros and cons of a moving mesh (in comparison to a static mesh). We also compare its accuracy to other codes. Specifically, we show that our implementation of external sources and time advancement scheme is more accurate and robust than AREPO's, when the mesh is allowed to move. We performed a parameter study of the cell rounding mechanism (Llyod iterations) and it effects. We find that in most cases a moving mesh gives better results than a static mesh, but it is not universally true. In the case where matter moves in one way, and a sound wave is traveling in the other way (such that relative to the grid the...

  20. Tangle-Free Mesh Motion for Ablation Simulations

    Science.gov (United States)

    Droba, Justin

    2016-01-01

    Problems involving mesh motion-which should not be mistakenly associated with moving mesh methods, a class of adaptive mesh redistribution techniques-are of critical importance in numerical simulations of the thermal response of melting and ablative materials. Ablation is the process by which material vaporizes or otherwise erodes due to strong heating. Accurate modeling of such materials is of the utmost importance in design of passive thermal protection systems ("heatshields") for spacecraft, the layer of the vehicle that ensures survival of crew and craft during re-entry. In an explicit mesh motion approach, a complete thermal solve is first performed. Afterwards, the thermal response is used to determine surface recession rates. These values are then used to generate boundary conditions for an a posteriori correction designed to update the location of the mesh nodes. Most often, linear elastic or biharmonic equations are used to model this material response, traditionally in a finite element framework so that complex geometries can be simulated. A simple scheme for moving the boundary nodes involves receding along the surface normals. However, for all but the simplest problem geometries, evolution in time following such a scheme will eventually bring the mesh to intersect and "tangle" with itself, inducing failure. This presentation demonstrates a comprehensive and sophisticated scheme that analyzes the local geometry of each node with help from user-provided clues to eliminate the tangle and enable simulations on a wide-class of difficult problem geometries. The method developed is demonstrated for linear elastic equations but is general enough that it may be adapted to other modeling equations. The presentation will explicate the inner workings of the tangle-free mesh motion algorithm for both two and three-dimensional meshes. It will show abstract examples of the method's success, including a verification problem that demonstrates its accuracy and

  1. Mesh Adaptation and Shape Optimization on Unstructured Meshes Project

    Data.gov (United States)

    National Aeronautics and Space Administration — In this SBIR CRM proposes to implement the entropy adjoint method for solution adaptive mesh refinement into the Loci/CHEM unstructured flow solver. The scheme will...

  2. Tetrahedral mesh for needle insertion

    OpenAIRE

    Syvertsen, Rolf Anders

    2007-01-01

    This is a Master’s thesis in how to make a tetrahedral mesh for use in a needle insertion simulator. It also describes how it is possible to make the simulator, and how to improve it to make it as realistic as possible. The medical simulator uses a haptic device, a haptic scene graph and a FEM for realistic soft tissue deformation and interaction. In this project a tetrahedral mesh is created from a polygon model, and then the mesh has been loaded into the HaptX haptic scene graph. The object...

  3. Nanowire mesh solar fuels generator

    Energy Technology Data Exchange (ETDEWEB)

    Yang, Peidong; Chan, Candace; Sun, Jianwei; Liu, Bin

    2016-05-24

    This disclosure provides systems, methods, and apparatus related to a nanowire mesh solar fuels generator. In one aspect, a nanowire mesh solar fuels generator includes (1) a photoanode configured to perform water oxidation and (2) a photocathode configured to perform water reduction. The photocathode is in electrical contact with the photoanode. The photoanode may include a high surface area network of photoanode nanowires. The photocathode may include a high surface area network of photocathode nanowires. In some embodiments, the nanowire mesh solar fuels generator may include an ion conductive polymer infiltrating the photoanode and the photocathode in the region where the photocathode is in electrical contact with the photoanode.

  4. Manometric Comparison of Anorectal Function after Posterior Vaginal Compartment Repair with and without Mesh

    Directory of Open Access Journals (Sweden)

    Shuo Liang

    2015-01-01

    Full Text Available Background: Although repair augmented with mesh has been proved its priority in anatomical and functional recovery after anterior compartment reconstruction, the data about posterior compartment are scarce. The aim of this study was to compare bowel functional outcome of posterior vaginal compartment repair with and without mesh in patients with pelvic organ prolapse (POP. Methods: This was a prospective, double-blind, clinical pilot study of 22 postmenopausal women with symptomatic POP (overall POP-quantification [POP-Q] Stage III-IV who underwent total pelvic floor reconstruction. Patients were grouped according to the use of mesh for posterior vaginal compartment repair: A mesh group and a nonmesh group. POP-Q stage, the pelvic floor impact questionnaire short form-7 (PFIQ-7 and anorectal manometry were evaluated before and 3 months after surgery. Anatomical success was defined as POP-Q Stage II or less. A t-test was used to compare preoperative with postoperative data in the two groups. Results: Totally, 17 (71% were available for the follow-up. POP-Q measurements improved significantly compared to baseline (P 0.05. Compared with baseline, the nonmesh group exhibited a statistically significant decrease in anal residual pressure, a significant increase in the anorectal pressure difference during bowel movement, and a reduced rate of dyssynergia defecation pattern (P < 0.05. Conclusions: Provided there is sufficient support for the anterior wall and apex of vagina with mesh, posterior compartment repair without mesh may be as effective as repair with mesh for anatomical recovery while providing better anorectal motor function.

  5. Medical Image Processing for Fully Integrated Subject Specific Whole Brain Mesh Generation

    Directory of Open Access Journals (Sweden)

    Chih-Yang Hsu

    2015-05-01

    Full Text Available Currently, anatomically consistent segmentation of vascular trees acquired with magnetic resonance imaging requires the use of multiple image processing steps, which, in turn, depend on manual intervention. In effect, segmentation of vascular trees from medical images is time consuming and error prone due to the tortuous geometry and weak signal in small blood vessels. To overcome errors and accelerate the image processing time, we introduce an automatic image processing pipeline for constructing subject specific computational meshes for entire cerebral vasculature, including segmentation of ancillary structures; the grey and white matter, cerebrospinal fluid space, skull, and scalp. To demonstrate the validity of the new pipeline, we segmented the entire intracranial compartment with special attention of the angioarchitecture from magnetic resonance imaging acquired for two healthy volunteers. The raw images were processed through our pipeline for automatic segmentation and mesh generation. Due to partial volume effect and finite resolution, the computational meshes intersect with each other at respective interfaces. To eliminate anatomically inconsistent overlap, we utilized morphological operations to separate the structures with a physiologically sound gap spaces. The resulting meshes exhibit anatomically correct spatial extent and relative positions without intersections. For validation, we computed critical biometrics of the angioarchitecture, the cortical surfaces, ventricular system, and cerebrospinal fluid (CSF spaces and compared against literature values. Volumina and surface areas of the computational mesh were found to be in physiological ranges. In conclusion, we present an automatic image processing pipeline to automate the segmentation of the main intracranial compartments including a subject-specific vascular trees. These computational meshes can be used in 3D immersive visualization for diagnosis, surgery planning with haptics

  6. Surface Modellinhg and Mesh Generation for Simulating Superplastic Forming

    Institute of Scientific and Technical Information of China (English)

    ZhaoHongsheng; LinJianguo

    2002-01-01

    This paper presents an approach which enables surface modelling,mesh generation and the Finite Element(FE) analysis to be integrated together to simulate superplastic forming process for complex shaped components.Techniques have been developed to generate an FE mesh over non-four-sided surface areas,the boundaries of which are Bezier curves of arbitrary degree,using a consistent expression.Theoretical evidence is given to determine the number of Bezier triangular patches required for accurately re-constructing die surfaces within a commercial FE solver.The developed techniques have been successfully used in determining the process parameters for forming a 3D rectangular box.

  7. Mersiline mesh in premaxillary augmentation.

    Science.gov (United States)

    Foda, Hossam M T

    2005-01-01

    Premaxillary retrusion may distort the aesthetic appearance of the columella, lip, and nasal tip. This defect is characteristically seen in, but not limited to, patients with cleft lip nasal deformity. This study investigated 60 patients presenting with premaxillary deficiencies in which Mersiline mesh was used to augment the premaxilla. All the cases had surgery using the external rhinoplasty technique. Two methods of augmentation with Mersiline mesh were used: the Mersiline roll technique, for the cases with central symmetric deficiencies, and the Mersiline packing technique, for the cases with asymmetric deficiencies. Premaxillary augmentation with Mersiline mesh proved to be simple technically, easy to perform, and not associated with any complications. Periodic follow-up evaluation for a mean period of 32 months (range, 12-98 months) showed that an adequate degree of premaxillary augmentation was maintained with no clinically detectable resorption of the mesh implant. PMID:15959688

  8. Generic Mesh Refinement On GPU

    OpenAIRE

    Boubekeur, Tamy; Schlick, Christophe

    2005-01-01

    International audience Many recent publications have shown that a large variety of computation involved in computer graphics can be moved from the CPU to the GPU, by a clever use of vertex or fragment shaders. Nonetheless there is still one kind of algorithms that is hard to translate from CPU to GPU: mesh refinement techniques. The main reason for this, is that vertex shaders available on current graphics hardware do not allow the generation of additional vertices on a mesh stored in grap...

  9. GENERATION OF IRREGULAR HEXAGONAL MESHES

    Directory of Open Access Journals (Sweden)

    Vlasov Aleksandr Nikolaevich

    2012-07-01

    Decomposition is performed in a constructive way and, as option, it involves meshless representation. Further, this mapping method is used to generate the calculation mesh. In this paper, the authors analyze different cases of mapping onto simply connected and bi-connected canonical domains. They represent forward and backward mapping techniques. Their potential application for generation of nonuniform meshes within the framework of the asymptotic homogenization theory is also performed to assess and project effective characteristics of heterogeneous materials (composites.

  10. Image-driven mesh optimization

    Energy Technology Data Exchange (ETDEWEB)

    Lindstrom, P; Turk, G

    2001-01-05

    We describe a method of improving the appearance of a low vertex count mesh in a manner that is guided by rendered images of the original, detailed mesh. This approach is motivated by the fact that greedy simplification methods often yield meshes that are poorer than what can be represented with a given number of vertices. Our approach relies on edge swaps and vertex teleports to alter the mesh connectivity, and uses the downhill simplex method to simultaneously improve vertex positions and surface attributes. Note that this is not a simplification method--the vertex count remains the same throughout the optimization. At all stages of the optimization the changes are guided by a metric that measures the differences between rendered versions of the original model and the low vertex count mesh. This method creates meshes that are geometrically faithful to the original model. Moreover, the method takes into account more subtle aspects of a model such as surface shading or whether cracks are visible between two interpenetrating parts of the model.

  11. Method and system for mesh network embedded devices

    Science.gov (United States)

    Wang, Ray (Inventor)

    2009-01-01

    A method and system for managing mesh network devices. A mesh network device with integrated features creates an N-way mesh network with a full mesh network topology or a partial mesh network topology.

  12. Performance of a mixed-mesh Godunov-based flood inundation model

    Science.gov (United States)

    Kim, B.; Sanders, B. F.; Kim, H.; Famiglietti, J. S.

    2011-12-01

    Godunov-based finite volume models for solving the shallow-water equations, which are seeing increasing use in hydrology for flood inundation modeling, have almost exclusively adopted either structured meshes of quadrilateral cells or unstructured meshes of triangular cells but have not focused on mixing quadrilateral and triangular cells as is common with finite element models. Triangular meshing is advantageous in complex topography arising from channel junctions, meandering channels, and artificial structures because powerful Delaunay mesh generators easily accommodate internal and external boundary constraints while retaining mesh quality attributes such as area and angle properties. On the other hand, quadrilateral meshing is advantages in the absence of boundary constraints because efficient and low-overhead mesh designs such as Cartesian grids can be used. Motivated by the need for efficient and accurate modeling of flood inundation including channel flows, overbank flows, and overtopping processes, a mixed-mesh version of the BreZo flood inundation model is presented and its ease-of-use and performance in a series of laboratory and field scale test problems is examined in comparison to versions that use either triangular or quadrilateral cells exclusively. We find that mixed meshes are not as easily prepared as triangular meshes for commonly encountered study-site geometries, but execution times and memory requirements for a similar level of accuracy are reduced. The challenges of designing high quality meshes for flood modeling highlights the need for a new class of mesh generators that can scan high resolution topographic data (e.g., lidar) for critical features (e.g., channels and levees) and automate mixed-mesh generation and parameterization.

  13. Diffraction analysis of mesh deployable reflector antennas

    Science.gov (United States)

    Rahmat-Samii, Y.

    1985-04-01

    A formulation and many representative numerical results for mesh reflector antennas are presented. The reflection coefficient matrix for the prescribed mesh configuration was determined and the local coordinate system of the mesh cells at each point on the curved reflector surface was accentuated. A novel strip aperture model was used to formulate the transmission coefficient matrix for a variety of mesh cell configurations. Numerical data are tailored to the dimensions of a conceptually designed land mobile satellite system (LMSS) which employs a large mesh deployable offset parabolic antenna. Results are shown for an offset parabolic reflector with mesh surfaces similar to the mesh surface of tracking and data relay satellite system (TDRSS).

  14. Diffraction Analysis of Mesh Deployable Reflector Antennas

    Science.gov (United States)

    Rahmat-Samii, Y.

    1985-01-01

    A formulation and many representative numerical results for mesh reflector antennas are presented. The reflection coefficient matrix for the prescribed mesh configuration was determined and the local coordinate system of the mesh cells at each point on the curved reflector surface was accentuated. A novel strip aperture model was used to formulate the transmission coefficient matrix for a variety of mesh cell configurations. Numerical data are tailored to the dimensions of a conceptually designed land mobile satellite system (LMSS) which employs a large mesh deployable offset parabolic antenna. Results are shown for an offset parabolic reflector with mesh surfaces similar to the mesh surface of tracking and data relay satellite system (TDRSS).

  15. User Manual for the PROTEUS Mesh Tools

    Energy Technology Data Exchange (ETDEWEB)

    Smith, Micheal A. [Argonne National Lab. (ANL), Argonne, IL (United States); Shemon, Emily R. [Argonne National Lab. (ANL), Argonne, IL (United States)

    2015-06-01

    This report describes the various mesh tools that are provided with the PROTEUS code giving both descriptions of the input and output. In many cases the examples are provided with a regression test of the mesh tools. The most important mesh tools for any user to consider using are the MT_MeshToMesh.x and the MT_RadialLattice.x codes. The former allows the conversion between most mesh types handled by PROTEUS while the second allows the merging of multiple (assembly) meshes into a radial structured grid. Note that the mesh generation process is recursive in nature and that each input specific for a given mesh tool (such as .axial or .merge) can be used as “mesh” input for any of the mesh tools discussed in this manual.

  16. CCD Photometry of bright stars using objective wire mesh

    International Nuclear Information System (INIS)

    Obtaining accurate photometry of bright stars from the ground remains problematic due to the danger of overexposing the target and/or the lack of suitable nearby comparison stars. The century-old method of using objective wire mesh to produce multiple stellar images seems promising for the precise CCD photometry of such stars. Furthermore, our tests on β Cep and its comparison star, differing by 5 mag, are very encouraging. Using a CCD camera and a 20 cm telescope with the objective covered by a plastic wire mesh, in poor weather conditions, we obtained differential photometry with a precision of 4.5 mmag per two minute exposure. Our technique is flexible and may be tuned to cover a range as big as 6-8 mag. We discuss the possibility of installing a wire mesh directly in the filter wheel.

  17. Relativistic polarizabilities with the Lagrange-mesh method

    CERN Document Server

    Filippin, Livio; Baye, Daniel

    2016-01-01

    Relativistic dipolar to hexadecapolar polarizabilities of the ground state and some excited states of hydrogenic atoms are calculated by using numerically exact energies and wave functions obtained from the Dirac equation with the Lagrange-mesh method. This approach is an approximate variational method taking the form of equations on a grid because of the use of a Gauss quadrature approximation. The partial polarizabilities conserving the absolute value of the quantum number $\\kappa$ are also numerically exact with small numbers of mesh points. The ones where $|\\kappa|$ changes are very accurate when using three different meshes for the initial and final wave functions and for the calculation of matrix elements. The polarizabilities of the $n=2$ excited states of hydrogenic atoms are also studied with a separate treatment of the final states that are degenerate at the nonrelativistic approximation. The method provides high accuracies for polarizabilities of a particle in a Yukawa potential and is applied to a...

  18. Geostrophic balance preserving interpolation in mesh adaptive shallow-water ocean modelling

    CERN Document Server

    Maddison, James R; Farrell, Patrick E

    2010-01-01

    The accurate representation of geostrophic balance is an essential requirement for numerical modelling of geophysical flows. Significant effort is often put into the selection of accurate or optimal balance representation by the discretisation of the fundamental equations. The issue of accurate balance representation is particularly challenging when applying dynamic mesh adaptivity, where there is potential for additional imbalance injection when interpolating to new, optimised meshes. In the context of shallow-water modelling, we present a new method for preservation of geostrophic balance when applying dynamic mesh adaptivity. This approach is based upon interpolation of the Helmholtz decomposition of the Coriolis acceleration. We apply this in combination with a discretisation for which states in geostrophic balance are exactly steady solutions of the linearised equations on an f-plane; this method guarantees that a balanced and steady flow on a donor mesh remains balanced and steady after interpolation on...

  19. A coarse-mesh nodal method-diffusive-mesh finite difference method

    Energy Technology Data Exchange (ETDEWEB)

    Joo, H.; Nichols, W.R.

    1994-05-01

    Modern nodal methods have been successfully used for conventional light water reactor core analyses where the homogenized, node average cross sections (XSs) and the flux discontinuity factors (DFs) based on equivalence theory can reliably predict core behavior. For other types of cores and other geometries characterized by tightly-coupled, heterogeneous core configurations, the intranodal flux shapes obtained from a homogenized nodal problem may not accurately portray steep flux gradients near fuel assembly interfaces or various reactivity control elements. This may require extreme values of DFs (either very large, very small, or even negative) to achieve a desired solution accuracy. Extreme values of DFs, however, can disrupt the convergence of the iterative methods used to solve for the node average fluxes, and can lead to a difficulty in interpolating adjacent DF values. Several attempts to remedy the problem have been made, but nothing has been satisfactory. A new coarse-mesh nodal scheme called the Diffusive-Mesh Finite Difference (DMFD) technique, as contrasted with the coarse-mesh finite difference (CMFD) technique, has been developed to resolve this problem. This new technique and the development of a few-group, multidimensional kinetics computer program are described in this paper.

  20. A coarse-mesh nodal method-diffusive-mesh finite difference method

    International Nuclear Information System (INIS)

    Modern nodal methods have been successfully used for conventional light water reactor core analyses where the homogenized, node average cross sections (XSs) and the flux discontinuity factors (DFs) based on equivalence theory can reliably predict core behavior. For other types of cores and other geometries characterized by tightly-coupled, heterogeneous core configurations, the intranodal flux shapes obtained from a homogenized nodal problem may not accurately portray steep flux gradients near fuel assembly interfaces or various reactivity control elements. This may require extreme values of DFs (either very large, very small, or even negative) to achieve a desired solution accuracy. Extreme values of DFs, however, can disrupt the convergence of the iterative methods used to solve for the node average fluxes, and can lead to a difficulty in interpolating adjacent DF values. Several attempts to remedy the problem have been made, but nothing has been satisfactory. A new coarse-mesh nodal scheme called the Diffusive-Mesh Finite Difference (DMFD) technique, as contrasted with the coarse-mesh finite difference (CMFD) technique, has been developed to resolve this problem. This new technique and the development of a few-group, multidimensional kinetics computer program are described in this paper

  1. Mesh Resolution Effect on 3D RANS Turbomachinery Flow Simulations

    CERN Document Server

    Yershov, Sergiy

    2016-01-01

    The paper presents the study of the effect of a mesh refinement on numerical results of 3D RANS computations of turbomachinery flows. The CFD solver F, which based on the second-order accurate ENO scheme, is used in this study. The simplified multigrid algorithm and local time stepping permit decreasing computational time. The flow computations are performed for a number of turbine and compressor cascades and stages. In all flow cases, the successively refined meshes of H-type with an approximate orthogonalization near the solid walls were generated. The results obtained are compared in order to estimate their both mesh convergence and ability to resolve the transonic flow pattern. It is concluded that for thorough studying the fine phenomena of the 3D turbomachinery flows, it makes sense to use the computational meshes with the number of cells from several millions up to several hundred millions per a single turbomachinery blade channel, while for industrial computations, a mesh of about or less than one mil...

  2. Computational mesh generation for vascular structures with deformable surfaces

    International Nuclear Information System (INIS)

    Computational blood flow and vessel wall mechanics simulations for vascular structures are becoming an important research tool for patient-specific surgical planning and intervention. An important step in the modelling process for patient-specific simulations is the creation of the computational mesh based on the segmented geometry. Most known solutions either require a large amount of manual processing or lead to a substantial difference between the segmented object and the actual computational domain. We have developed a chain of algorithms that lead to a closely related implementation of image segmentation with deformable models and 3D mesh generation. The resulting processing chain is very robust and leads both to an accurate geometrical representation of the vascular structure as well as high quality computational meshes. The chain of algorithms has been tested on a wide variety of shapes. A benchmark comparison of our mesh generation application with five other available meshing applications clearly indicates that the new approach outperforms the existing methods in the majority of cases. (orig.)

  3. Connectivity editing for quadrilateral meshes

    KAUST Repository

    Peng, Chihan

    2011-12-12

    We propose new connectivity editing operations for quadrilateral meshes with the unique ability to explicitly control the location, orientation, type, and number of the irregular vertices (valence not equal to four) in the mesh while preserving sharp edges. We provide theoretical analysis on what editing operations are possible and impossible and introduce three fundamental operations to move and re-orient a pair of irregular vertices. We argue that our editing operations are fundamental, because they only change the quad mesh in the smallest possible region and involve the fewest irregular vertices (i.e., two). The irregular vertex movement operations are supplemented by operations for the splitting, merging, canceling, and aligning of irregular vertices. We explain how the proposed highlevel operations are realized through graph-level editing operations such as quad collapses, edge flips, and edge splits. The utility of these mesh editing operations are demonstrated by improving the connectivity of quad meshes generated from state-of-art quadrangulation techniques. © 2011 ACM.

  4. Connectivity editing for quadrilateral meshes

    KAUST Repository

    Peng, Chihan

    2011-12-01

    We propose new connectivity editing operations for quadrilateral meshes with the unique ability to explicitly control the location, orientation, type, and number of the irregular vertices (valence not equal to four) in the mesh while preserving sharp edges. We provide theoretical analysis on what editing operations are possible and impossible and introduce three fundamental operations to move and re-orient a pair of irregular vertices. We argue that our editing operations are fundamental, because they only change the quad mesh in the smallest possible region and involve the fewest irregular vertices (i.e., two). The irregular vertex movement operations are supplemented by operations for the splitting, merging, canceling, and aligning of irregular vertices. We explain how the proposed high-level operations are realized through graph-level editing operations such as quad collapses, edge flips, and edge splits. The utility of these mesh editing operations are demonstrated by improving the connectivity of quad meshes generated from state-of-art quadrangulation techniques.

  5. Anatomical entity recognition with a hierarchical framework augmented by external resources.

    Directory of Open Access Journals (Sweden)

    Yan Xu

    Full Text Available References to anatomical entities in medical records consist not only of explicit references to anatomical locations, but also other diverse types of expressions, such as specific diseases, clinical tests, clinical treatments, which constitute implicit references to anatomical entities. In order to identify these implicit anatomical entities, we propose a hierarchical framework, in which two layers of named entity recognizers (NERs work in a cooperative manner. Each of the NERs is implemented using the Conditional Random Fields (CRF model, which use a range of external resources to generate features. We constructed a dictionary of anatomical entity expressions by exploiting four existing resources, i.e., UMLS, MeSH, RadLex and BodyPart3D, and supplemented information from two external knowledge bases, i.e., Wikipedia and WordNet, to improve inference of anatomical entities from implicit expressions. Experiments conducted on 300 discharge summaries showed a micro-averaged performance of 0.8509 Precision, 0.7796 Recall and 0.8137 F1 for explicit anatomical entity recognition, and 0.8695 Precision, 0.6893 Recall and 0.7690 F1 for implicit anatomical entity recognition. The use of the hierarchical framework, which combines the recognition of named entities of various types (diseases, clinical tests, treatments with information embedded in external knowledge bases, resulted in a 5.08% increment in F1. The resources constructed for this research will be made publicly available.

  6. GRChombo : Numerical Relativity with Adaptive Mesh Refinement

    CERN Document Server

    Clough, Katy; Finkel, Hal; Kunesch, Markus; Lim, Eugene A; Tunyasuvunakool, Saran

    2015-01-01

    Numerical relativity has undergone a revolution in the past decade. With a well-understood mathematical formalism, and full control over the gauge modes, it is now entering an era in which the science can be properly explored. In this work, we introduce GRChombo, a new numerical relativity code written to take full advantage of modern parallel computing techniques. GRChombo's features include full adaptive mesh refinement with block structured Berger-Rigoutsos grid generation which supports non-trivial "many-boxes-in-many-boxes" meshing hierarchies, and massive parallelism through the Message Passing Interface (MPI). GRChombo evolves the Einstein equation with the standard BSSN formalism, with an option to turn on CCZ4 constraint damping if required. We show that GRChombo passes all the standard "Apples-to-Apples" code comparison tests. We also show that it can stably and accurately evolve vacuum black hole spacetimes such as binary black hole mergers, and non-vacuum spacetimes such as scalar collapses into b...

  7. Compressive VOF method with skewness correction to capture sharp interfaces on arbitrary meshes

    Science.gov (United States)

    Denner, Fabian; van Wachem, Berend G. M.

    2014-12-01

    The accurate and efficient modelling of two-phase flows is at present mostly limited to structured, unskewed meshes, due to the additional topological and numerical complexity of arbitrary, unstructured meshes. Compressive VOF methods which discretize the interface advection with algebraic differencing schemes are computationally efficient and inherently applicable to arbitrary meshes. However, compressive VOF methods evidently suffer severely from numerical diffusion on meshes with topological skewness. In this paper we present a compressive VOF method using a state-of-the-art donor-acceptor advection scheme which includes novel modifications to substantially reduce numerical diffusion on arbitrary meshes without adding computational complexity. The new methodology accurately captures evolving interfaces on any arbitrary, non-overlapping mesh and conserves mass within the limits of the applied solver tolerance. A thorough validation of the presented methods is conducted, examining the pure advection of the interface indicator function as well as the application to evolving interfaces with surface tension. Crucially, the results on equidistant Cartesian and arbitrary tetrahedral meshes are shown to be comparable and accurate.

  8. Application of the VOF method based on unstructured quadrilateral mesh

    Institute of Scientific and Technical Information of China (English)

    JI Chun-ning; SHI Ying

    2008-01-01

    To simulate two-dimensional free-surface flows with complex boundaries directly and accurately, a novel VOF (Volume-of-fluid) method based on unstructured quadrilateral mesh is presented. Without introducing any complicated boundary treatment or artificial diffusion, this method treated curved boundaries directly by utilizing the inherent merit of unstructured mesh in fitting curves. The PLIC (Piecewise Linear Interface Calculation) method was adopted to obtain a second-order accurate linearized reconstruction approximation and the MLER (Modified Lagrangian-Eulerian Re-map) method was introduced to advect fluid volumes on unstructured mesh. Moreover, an analytical relation for the interface's line constant vs. the volume clipped by the interface was developed so as to improve the method's efficiency. To validate this method, a comprehensive series of large straining advection tests were performed. Numerical results provide convincing evidences for the method's high volume conservative accuracy and second-order shape error convergence rate. Also, a dramatic improvement on computational accuracy over its unstructured triangular mesh counterpart is checked.

  9. Development of a new generation of high-resolution anatomical models for medical device evaluation: the Virtual Population 3.0

    Science.gov (United States)

    Gosselin, Marie-Christine; Neufeld, Esra; Moser, Heidi; Huber, Eveline; Farcito, Silvia; Gerber, Livia; Jedensjö, Maria; Hilber, Isabel; Di Gennaro, Fabienne; Lloyd, Bryn; Cherubini, Emilio; Szczerba, Dominik; Kainz, Wolfgang; Kuster, Niels

    2014-09-01

    The Virtual Family computational whole-body anatomical human models were originally developed for electromagnetic (EM) exposure evaluations, in particular to study how absorption of radiofrequency radiation from external sources depends on anatomy. However, the models immediately garnered much broader interest and are now applied by over 300 research groups, many from medical applications research fields. In a first step, the Virtual Family was expanded to the Virtual Population to provide considerably broader population coverage with the inclusion of models of both sexes ranging in age from 5 to 84 years old. Although these models have proven to be invaluable for EM dosimetry, it became evident that significantly enhanced models are needed for reliable effectiveness and safety evaluations of diagnostic and therapeutic applications, including medical implants safety. This paper describes the research and development performed to obtain anatomical models that meet the requirements necessary for medical implant safety assessment applications. These include implementation of quality control procedures, re-segmentation at higher resolution, more-consistent tissue assignments, enhanced surface processing and numerous anatomical refinements. Several tools were developed to enhance the functionality of the models, including discretization tools, posing tools to expand the posture space covered, and multiple morphing tools, e.g., to develop pathological models or variations of existing ones. A comprehensive tissue properties database was compiled to complement the library of models. The results are a set of anatomically independent, accurate, and detailed models with smooth, yet feature-rich and topologically conforming surfaces. The models are therefore suited for the creation of unstructured meshes, and the possible applications of the models are extended to a wider range of solvers and physics. The impact of these improvements is shown for the MRI exposure of an adult

  10. Efficient Packet Forwarding in Mesh Network

    CERN Document Server

    Kanrar, Soumen

    2012-01-01

    Wireless Mesh Network (WMN) is a multi hop low cost, with easy maintenance robust network providing reliable service coverage. WMNs consist of mesh routers and mesh clients. In this architecture, while static mesh routers form the wireless backbone, mesh clients access the network through mesh routers as well as directly meshing with each other. Different from traditional wireless networks, WMN is dynamically self-organized and self-configured. In other words, the nodes in the mesh network automatically establish and maintain network connectivity. Over the years researchers have worked, to reduce the redundancy in broadcasting packet in the mesh network in the wireless domain for providing reliable service coverage, the source node deserves to broadcast or flood the control packets. The redundant control packet consumes the bandwidth of the wireless medium and significantly reduces the average throughput and consequently reduces the overall system performance. In this paper I study the optimization problem in...

  11. On Linear Spaces of Polyhedral Meshes.

    Science.gov (United States)

    Poranne, Roi; Chen, Renjie; Gotsman, Craig

    2015-05-01

    Polyhedral meshes (PM)-meshes having planar faces-have enjoyed a rise in popularity in recent years due to their importance in architectural and industrial design. However, they are also notoriously difficult to generate and manipulate. Previous methods start with a smooth surface and then apply elaborate meshing schemes to create polyhedral meshes approximating the surface. In this paper, we describe a reverse approach: given the topology of a mesh, we explore the space of possible planar meshes having that topology. Our approach is based on a complete characterization of the maximal linear spaces of polyhedral meshes contained in the curved manifold of polyhedral meshes with a given topology. We show that these linear spaces can be described as nullspaces of differential operators, much like harmonic functions are nullspaces of the Laplacian operator. An analysis of this operator provides tools for global and local design of a polyhedral mesh, which fully expose the geometric possibilities and limitations of the given topology.

  12. Laparoscopic-Assisted Tension-free Vaginal Mesh: An Innovative Approach to Placing Synthetic Mesh Transvaginally for Surgical Correction of Pelvic Organ Prolapse

    Directory of Open Access Journals (Sweden)

    Watanabe,Toyohiko

    2012-02-01

    Full Text Available Polypropylene mesh implants for the correction of pelvic organ prolapse (POP are now available in Japan. We developed an innovative approach for correcting POP by placing polypropylene mesh transvaginally with laparoscopic assistance. From June 2007 through March 2010, sixteen consecutive patients with symptomatic stage 2 or 3 pelvic organ prolapse underwent the laparoscopic-assisted tension-free vaginal mesh procedure at Okayama University Hospital. All patients were evaluated before and at 1, 3, 6, and 12 months after surgery. Female sexual function was also evaluated with the Female Sexual Function Index (FSFI. The procedure was performed successfully without significant complications. Fifteen of 16 patients were considered anatomically cured (93.8% at 12 months postoperatively. One patient with a recurrent stage 3 vaginal vault prolapse required sacral colpopexy six months postoperatively. Total FSFI scores improved significantly from 10.3±1.3 at baseline to 18.0±1.2 at 12 months after surgery. The laparoscopic-assisted trans-vaginal mesh is a safe, effective, and simple procedure for POP repairs. The procedure not only restores anatomic relationships but also improves sexual function.

  13. Deformable mesh registration for the validation of automatic target localization algorithms

    Science.gov (United States)

    Robertson, Scott; Weiss, Elisabeth; Hugo, Geoffrey D.

    2013-01-01

    Purpose: To evaluate deformable mesh registration (DMR) as a tool for validating automatic target registration algorithms used during image-guided radiation therapy. Methods: DMR was implemented in a hierarchical model, with rigid, affine, and B-spline transforms optimized in succession to register a pair of surface meshes. The gross tumor volumes (primary tumor and involved lymph nodes) were contoured by a physician on weekly CT scans in a cohort of lung cancer patients and converted to surface meshes. The meshes from weekly CT images were registered to the mesh from the planning CT, and the resulting registered meshes were compared with the delineated surfaces. Known deformations were also applied to the meshes, followed by mesh registration to recover the known deformation. Mesh registration accuracy was assessed at the mesh surface by computing the symmetric surface distance (SSD) between vertices of each registered mesh pair. Mesh registration quality in regions within 5 mm of the mesh surface was evaluated with respect to a high quality deformable image registration. Results: For 18 patients presenting with a total of 19 primary lung tumors and 24 lymph node targets, the SSD averaged 1.3 ± 0.5 and 0.8 ± 0.2 mm, respectively. Vertex registration errors (VRE) relative to the applied known deformation were 0.8 ± 0.7 and 0.2 ± 0.3 mm for the primary tumor and lymph nodes, respectively. Inside the mesh surface, corresponding average VRE ranged from 0.6 to 0.9 and 0.2 to 0.9 mm, respectively. Outside the mesh surface, average VRE ranged from 0.7 to 1.8 and 0.2 to 1.4 mm. The magnitude of errors generally increased with increasing distance away from the mesh. Conclusions: Provided that delineated surfaces are available, deformable mesh registration is an accurate and reliable method for obtaining a reference registration to validate automatic target registration algorithms for image-guided radiation therapy, specifically in regions on or near the target surfaces

  14. ANATOMICAL PROPERTIES OF PLANTAGO ARENARIA

    OpenAIRE

    Nicoleta IANOVICI; SINITEAN, Adrian; Aurel FAUR

    2011-01-01

    Psammophytes are marked by a number of adaptations that enable them to exist in the hard environmental conditions of the sand habitats. In this study, the anatomical characteristics of Plantago arenaria were examined. Studies were conducted to assess the diversity of anatomical adaptations of vegetative organs in this taxa. Results are presented with original photographs. The analysis of leaf anatomy in P. arenaria showed that the leaves contained a contained xeromorphic traits. Arbuscular my...

  15. DISCO: A 3D Moving-Mesh Magnetohydrodynamics Code Designed for the Study of Astrophysical Disks

    CERN Document Server

    Duffell, Paul C

    2016-01-01

    This work presents the publicly available moving-mesh magnetohydrodynamics code DISCO. DISCO is efficient and accurate at evolving orbital fluid motion in two and three dimensions, especially at high Mach number. DISCO employs a moving-mesh approach utilizing a dynamic cylindrical mesh that can shear azimuthally to follow the orbital motion of the gas. The moving mesh removes diffusive advection errors and allows for longer timesteps than a static grid. Magnetohydrodynamics is implemented in DISCO using an HLLD Riemann solver and a novel constrained transport scheme which is compatible with the mesh motion. DISCO is tested against a wide variety of problems, which are designed to test its stability, accuracy and scalability. In addition, several magnetohydrodynamics tests are performed which demonstrate the accuracy and stability of the new constrained transport approach, including two tests of the magneto-rotational instability (MRI); one testing the linear growth rate and the other following the instability...

  16. DISCO: A 3D Moving-mesh Magnetohydrodynamics Code Designed for the Study of Astrophysical Disks

    Science.gov (United States)

    Duffell, Paul C.

    2016-09-01

    This work presents the publicly available moving-mesh magnetohydrodynamics (MHD) code DISCO. DISCO is efficient and accurate at evolving orbital fluid motion in two and three dimensions, especially at high Mach numbers. DISCO employs a moving-mesh approach utilizing a dynamic cylindrical mesh that can shear azimuthally to follow the orbital motion of the gas. The moving mesh removes diffusive advection errors and allows for longer time-steps than a static grid. MHD is implemented in DISCO using an HLLD Riemann solver and a novel constrained transport (CT) scheme that is compatible with the mesh motion. DISCO is tested against a wide variety of problems, which are designed to test its stability, accuracy, and scalability. In addition, several MHD tests are performed which demonstrate the accuracy and stability of the new CT approach, including two tests of the magneto-rotational instability, one testing the linear growth rate and the other following the instability into the fully turbulent regime.

  17. A Numerical Study of Blowup in the Harmonic Map Heat Flow Using the MMPDE Moving Mesh Method

    NARCIS (Netherlands)

    Haynes, R.D.; Huang, W.; Zegeling, P.A.

    2013-01-01

    The numerical solution of the harmonic heat map flow problems with blowup in finite or infinite time is considered using an adaptive moving mesh method. A properly chosen monitor function is derived so that the moving mesh method can be used to simulate blowup and produce accurate blowup profiles wh

  18. 6th International Meshing Roundtable '97

    Energy Technology Data Exchange (ETDEWEB)

    White, D.

    1997-09-01

    The goal of the 6th International Meshing Roundtable is to bring together researchers and developers from industry, academia, and government labs in a stimulating, open environment for the exchange of technical information related to the meshing process. In the pas~ the Roundtable has enjoyed significant participation born each of these groups from a wide variety of countries. The Roundtable will consist of technical presentations from contributed papers and abstracts, two invited speakers, and two invited panels of experts discussing topics related to the development and use of automatic mesh generation tools. In addition, this year we will feature a "Bring Your Best Mesh" competition and poster session to encourage discussion and participation from a wide variety of mesh generation tool users. The schedule and evening social events are designed to provide numerous opportunities for informal dialog. A proceedings will be published by Sandia National Laboratories and distributed at the Roundtable. In addition, papers of exceptionally high quaIity will be submitted to a special issue of the International Journal of Computational Geometry and Applications. Papers and one page abstracts were sought that present original results on the meshing process. Potential topics include but are got limited to: Unstructured triangular and tetrahedral mesh generation Unstructured quadrilateral and hexahedral mesh generation Automated blocking and structured mesh generation Mixed element meshing Surface mesh generation Geometry decomposition and clean-up techniques Geometry modification techniques related to meshing Adaptive mesh refinement and mesh quality control Mesh visualization Special purpose meshing algorithms for particular applications Theoretical or novel ideas with practical potential Technical presentations from industrial researchers.

  19. Conventional fascial technique versus mesh repair for advanced pelvic organ prolapse: Analysis of recurrences in treated and untreated compartments.

    Science.gov (United States)

    Damiani, G R; Riva, D; Pellegrino, A; Gaetani, M; Tafuri, S; Turoli, D; Croce, P; Loverro, G

    2016-04-01

    117 women with severe pelvic organ prolapse (POP; stage > 2) were enrolled to elucidate a 24-month outcome of POP surgery, using conventional or mesh repair with 3 techniques. 59 patients underwent conventional repair and 58 underwent mesh repair. Two types of mesh were used: a trocar-guided transobturator polypropylene (Avaulta, Bard Inc.) and a porcine dermis mesh (Pelvisoft, Bard Inc.). Women with recurrences, who underwent previous unsuccessful conventional repair, were randomised. Primary outcome was the evaluation of anatomic failures (prolapse stage > 1) in treated and untreated compartments. Anatomic failure was observed in 11 of 58 patients (19%; CI 8.9-29) in the mesh group and in 16 of 59 patients (27.1%; p value = 0.3) in the conventional group. 9 of 11 failures in the mesh group (15.5%; CI 6.2-24.8) were observed in the untreated compartment (de novo recurrences), 14.3% in Pelvisoft and 16.7% in Avaulta arm, while only 1 recurrence in the untreated compartment (1.7%) was observed in the conventional group (odds ratio 10.6, p = 0.03). PMID:26492359

  20. On-line residual capacity estimation for resource allocation in wireless mesh networks

    OpenAIRE

    Sarıkaya, Yunus; Sarikaya, Yunus

    2008-01-01

    Contention-based multi access scheme of 802.11 based wireless mesh networks imposes difficulties in achieving predictable service quality in multi-hop networks. In order to offer effective advanced network services such as flow admission control or load balancing, the residual capacity of the wireless links should be accurately estimated. In this work, we propose and validate an algorithm for the residual bandwidth of wireless mesh network. By collecting transmission statistics from the nearb...

  1. [Sigismund Laskowski and his anatomical preparations technique].

    Science.gov (United States)

    Gryglewski, Ryszard W

    2015-01-01

    Fixation of the entire bodies or individual organs, and later as well tissues and cellular structures, was and still is often a challenge for anatomists and histologists. Technique that combines extensive knowledge of natural sciences, as well as technical skills, was by those best researchers as Frederik Ruysch, brought to perfection. Preparations, if done with care and talent, are really propelling progress in anatomical studies and determining the quality of education for medical students and young physicians. And as it is true for many of today's medical disciplines and natural sciences, the nineteenth century was in many ways a breaking point for preparatory techniques in the realm of anatomy and histology. Among those who have achieved success, earning notoriety during their lifetime and often going into the annals of European most distinguished scholars were some Polish names: Louis Maurice Hirschfeld, whose preparations of the nervous system earned him well-deserved, international fame, Louis Charles Teichmann, who was the very first so precisely describing the lymphatic system and a creator of unique injection mass, Henry Kadyi, known for his outstanding preparations, especially of vascular system. Henry Frederick Hoyer sen., who was one of the first to use formalin regularly for accurate microscopic preparations, is seen by many as the founder of the Polish histology. In this group of innovators and precursors of modern preparation techniques place should be reserved for Zygmunt (Sigismund) Laskowski, Polish patriot, fighting in January Uprising, later an immigrant, a professor at the university sequentially Paris and Geneva. Acclaimed author of anatomical tables and certainly creator of one of the groundbreaking techniques in anatomical preparations. Based after many years of research on the simple glycerine-phenol mixture achieved excellent results both in fixation of entire bodies and organs or tissues. Quality of those preparations was as high and

  2. Simple mesh stent placement for treating intracranial aneurysm: progress in research

    International Nuclear Information System (INIS)

    Treatment of an aneurysm with a mesh stent alone becomes an emerging technique. The mechanism involves the mesh stents, when it crosses the neck of an aneurysm could change the internal circulation and induce the formation of stable thrombus and in turn assists the growth of neointima for anatomical healing of the aneurysmal neck. The mesh stent technique aimed at vascular reconstruction with expected curing effect for aneurysm together as a simple and safe way to keep the patency of the small arterial branches, just contrary to the covered stent. This technique couldn't be carried out practically in wide scale because of immaturity, therefore we give a comprehesive review in the progress of this field. (authors)

  3. A numbering algorithm for finite element on extruded meshes which avoids the unstructured mesh penalty

    OpenAIRE

    Bercea, Gheorghe-Teodor; McRae, Andrew T. T.; Ham, David A.; Mitchell, Lawrence; Rathgeber, Florian; Nardi, Luigi; Luporini, Fabio; Kelly, Paul H. J.

    2016-01-01

    We present a generic algorithm for numbering and then efficiently iterating over the data values attached to an extruded mesh. An extruded mesh is formed by replicating an existing mesh, assumed to be unstructured, to form layers of prismatic cells. Applications of extruded meshes include, but are not limited to, the representation of 3D high aspect ratio domains employed by geophysical finite element simulations. These meshes are structured in the extruded direction. The algorithm presented ...

  4. The moving mesh code Shadowfax

    CERN Document Server

    Vandenbroucke, Bert

    2016-01-01

    We introduce the moving mesh code Shadowfax, which can be used to evolve a mixture of gas, subject to the laws of hydrodynamics and gravity, and any collisionless fluid only subject to gravity, such as cold dark matter or stars. The code is written in C++ and its source code is made available to the scientific community under the GNU Affero General Public License. We outline the algorithm and the design of our implementation, and demonstrate its validity through the results of a set of basic test problems, which are also part of the public version. We also compare Shadowfax with a number of other publicly available codes using different hydrodynamical integration schemes, illustrating the advantages and disadvantages of the moving mesh technique.

  5. 21st International Meshing Roundtable

    CERN Document Server

    Weill, Jean-Christophe

    2013-01-01

    This volume contains the articles presented at the 21st International Meshing Roundtable (IMR) organized, in part, by Sandia National Laboratories and was held on October 7–10, 2012 in San Jose, CA, USA. The first IMR was held in 1992, and the conference series has been held annually since. Each year the IMR brings together researchers, developers, and application experts in a variety of disciplines, from all over the world, to present and discuss ideas on mesh generation and related topics. The technical papers in this volume present theoretical and novel ideas and algorithms with practical potential, as well as technical applications in science and engineering, geometric modeling, computer graphics, and visualization.

  6. Confined helium on Lagrange meshes

    CERN Document Server

    Baye, Daniel

    2015-01-01

    The Lagrange-mesh method has the simplicity of a calculation on a mesh and can have the accuracy of a variational method. It is applied to the study of a confined helium atom. Two types of confinement are considered. Soft confinements by potentials are studied in perimetric coordinates. Hard confinement in impenetrable spherical cavities is studied in a system of rescaled perimetric coordinates varying in [0,1] intervals. Energies and mean values of the distances between electrons and between an electron and the helium nucleus are calculated. A high accuracy of 11 to 15 significant figures is obtained with small computing times. Pressures acting on the confined atom are also computed. For sphere radii smaller than 1, their relative accuracies are better than $10^{-10}$. For larger radii up to 10, they progressively decrease to $10^{-3}$, still improving the best literature results.

  7. 22nd International Meshing Roundtable

    CERN Document Server

    Staten, Matthew

    2014-01-01

    This volume contains the articles presented at the 22nd International Meshing Roundtable (IMR) organized, in part, by Sandia National Laboratories and was held on Oct 13-16, 2013 in Orlando, Florida, USA.  The first IMR was held in 1992, and the conference series has been held annually since.  Each year the IMR brings together researchers, developers, and application experts in a variety of disciplines, from all over the world, to present and discuss ideas on mesh generation and related topics.  The technical papers in this volume present theoretical and novel ideas and algorithms with practical potential, as well as technical applications in science and engineering, geometric modeling, computer graphics and visualization.

  8. The moving mesh code SHADOWFAX

    Science.gov (United States)

    Vandenbroucke, B.; De Rijcke, S.

    2016-07-01

    We introduce the moving mesh code SHADOWFAX, which can be used to evolve a mixture of gas, subject to the laws of hydrodynamics and gravity, and any collisionless fluid only subject to gravity, such as cold dark matter or stars. The code is written in C++ and its source code is made available to the scientific community under the GNU Affero General Public Licence. We outline the algorithm and the design of our implementation, and demonstrate its validity through the results of a set of basic test problems, which are also part of the public version. We also compare SHADOWFAX with a number of other publicly available codes using different hydrodynamical integration schemes, illustrating the advantages and disadvantages of the moving mesh technique.

  9. Dynamic evaluation of pelvic floor reconstructive surgery using radiopaque meshes and three-dimensional helical CT

    Directory of Open Access Journals (Sweden)

    Paulo Palma

    2010-04-01

    Full Text Available PURPOSE: This prospective study was performed to achieve visualization of the reestablishment of anatomy after reconstructive surgery in the different pelvic compartments with non-absorbable radiopaque meshes, providing valuable anatomic information for surgeons implanting meshes. MATERIALS AND METHODS: A total of 30 female patients with stress urinary incontinence (SUI, anterior and posterior vaginal wall prolapse, or both underwent surgical repair using radiopaque meshes after written informed consent. Patients with SUI underwent five different surgeries. Patients with anterior vaginal prolapse underwent a procedure using a combined pre-pubic and transobturator mesh, and those with posterior vaginal prolapse underwent posterior slingplasty. Three-dimensional reconstruction using helical CT was performed four weeks postoperatively. RESULTS: In all cases, the mesh was clearly visualized. Transobturator slings were shown at the midurethra, and the anchoring tails perforated the obturator foramen at the safety region. Mini-slings were in the proper place, and computed angiography revealed that the anchoring system was away from the obturator vessels. In patients undergoing procedure for anterior vaginal prolapse, both pre-pubic armpit and obturator slings were clearly seen and the mesh was in the proper position, supporting the bladder base and occluding the distal part of the urogenital hiatus. Transcoccygeal sacropexy revealed indirectly a well-supported "neo rectovaginal fascia" and the anchoring tails at the level of ischial spines. CONCLUSION: Three-dimensional helical tomography images of the female pelvis using radiopaque meshes have a potential role in improving our understanding of pelvic floor reconstructive surgeries. These radiopaque meshes might be the basis of a new investigative methodology.

  10. Adaptive Mesh Refinement in CTH

    International Nuclear Information System (INIS)

    This paper reports progress on implementing a new capability of adaptive mesh refinement into the Eulerian multimaterial shock- physics code CTH. The adaptivity is block-based with refinement and unrefinement occurring in an isotropic 2:1 manner. The code is designed to run on serial, multiprocessor and massive parallel platforms. An approximate factor of three in memory and performance improvements over comparable resolution non-adaptive calculations has-been demonstrated for a number of problems

  11. Mesh networked unattended ground sensors

    Science.gov (United States)

    Colling, Kent; Calcutt, Wade; Winston, Mark; Jones, Barry

    2006-05-01

    McQ has developed a family of low cost unattended ground sensors that utilize self-configured, mesh network communications for wireless sensing. Intended for use in an urban environment, the area monitored by the sensor system poses a communication challenge. A discussion into the sensor's communication performance and how it affects sensor installation and the operation of the system once deployed is presented.

  12. Image meshing via hierarchical optimization*

    Institute of Scientific and Technical Information of China (English)

    Hao XIE; Ruo-feng TONGS

    2016-01-01

    Vector graphic, as a kind of geometric representation of raster images, has many advantages, e.g., definition independence and editing facility. A popular way to convert raster images into vector graphics is image meshing, the aim of which is to find a mesh to represent an image as faithfully as possible. For traditional meshing algorithms, the crux of the problem resides mainly in the high non-linearity and non-smoothness of the objective, which makes it difficult to find a desirable optimal solution. To ameliorate this situation, we present a hierarchical optimization algorithm solving the problem from coarser levels to finer ones, providing initialization for each level with its coarser ascent. To further simplify the problem, the original non-convex problem is converted to a linear least squares one, and thus becomes convex, which makes the problem much easier to solve. A dictionary learning framework is used to combine geometry and topology elegantly. Then an alternating scheme is employed to solve both parts. Experiments show that our algorithm runs fast and achieves better results than existing ones for most images.

  13. Image meshing via hierarchical optimization

    Institute of Scientific and Technical Information of China (English)

    Hao XIE; Ruo-feng TONG‡

    2016-01-01

    Vector graphic, as a kind of geometric representation of raster images, has many advantages, e.g., defi nition independence and editing facility. A popular way to convert raster images into vector graphics is image meshing, the aim of which is to fi nd a mesh to represent an image as faithfully as possible. For traditional meshing algorithms, the crux of the problem resides mainly in the high non-linearity and non-smoothness of the objective, which makes it difficult to fi nd a desirable optimal solution. To ameliorate this situation, we present a hierarchical optimization algorithm solving the problem from coarser levels to fi ner ones, providing initialization for each level with its coarser ascent. To further simplify the problem, the original non-convex problem is converted to a linear least squares one, and thus becomes convex, which makes the problem much easier to solve. A dictionary learning framework is used to combine geometry and topology elegantly. Then an alternating scheme is employed to solve both parts. Experiments show that our algorithm runs fast and achieves better results than existing ones for most images.

  14. Adaptive mesh generation for image registration and segmentation

    DEFF Research Database (Denmark)

    Fogtmann, Mads; Larsen, Rasmus

    2013-01-01

    This paper deals with the problem of generating quality tetrahedral meshes for image registration. From an initial coarse mesh the approach matches the mesh to the image volume by combining red-green subdivision and mesh evolution through mesh-to-image matching regularized with a mesh quality...

  15. ANATOMICAL PROPERTIES OF PLANTAGO ARENARIA

    Directory of Open Access Journals (Sweden)

    Nicoleta IANOVICI

    2011-01-01

    Full Text Available Psammophytes are marked by a number of adaptations that enable them to exist in the hard environmental conditions of the sand habitats. In this study, the anatomical characteristics of Plantago arenaria were examined. Studies were conducted to assess the diversity of anatomical adaptations of vegetative organs in this taxa. Results are presented with original photographs. The analysis of leaf anatomy in P. arenaria showed that the leaves contained a contained xeromorphic traits. Arbuscular mycorrhizal symbiosis seems to be critical for their survival.

  16. Cluster parallel rendering based on encoded mesh

    Institute of Scientific and Technical Information of China (English)

    QIN Ai-hong; XIONG Hua; PENG Hao-yu; LIU Zhen; SHI Jiao-ying

    2006-01-01

    Use of compressed mesh in parallel rendering architecture is still an unexplored area, the main challenge of which is to partition and sort the encoded mesh in compression-domain. This paper presents a mesh compression scheme PRMC (Parallel Rendering based Mesh Compression) supplying encoded meshes that can be partitioned and sorted in parallel rendering system even in encoded-domain. First, we segment the mesh into submeshes and clip the submeshes' boundary into Runs, and then piecewise compress the submeshes and Runs respectively. With the help of several auxiliary index tables, compressed submeshes and Runs can serve as rendering primitives in parallel rendering system. Based on PRMC, we design and implement a parallel rendering architecture. Compared with uncompressed representation, experimental results showed that PRMC meshes applied in cluster parallel rendering system can dramatically reduce the communication requirement.

  17. Optimizing the geometrical accuracy of curvilinear meshes

    CERN Document Server

    Toulorge, Thomas; Remacle, Jean-François

    2015-01-01

    This paper presents a method to generate valid high order meshes with optimized geometrical accuracy. The high order meshing procedure starts with a linear mesh, that is subsequently curved without taking care of the validity of the high order elements. An optimization procedure is then used to both untangle invalid elements and optimize the geometrical accuracy of the mesh. Standard measures of the distance between curves are considered to evaluate the geometrical accuracy in planar two-dimensional meshes, but they prove computationally too costly for optimization purposes. A fast estimate of the geometrical accuracy, based on Taylor expansions of the curves, is introduced. An unconstrained optimization procedure based on this estimate is shown to yield significant improvements in the geometrical accuracy of high order meshes, as measured by the standard Haudorff distance between the geometrical model and the mesh. Several examples illustrate the beneficial impact of this method on CFD solutions, with a part...

  18. [Antique anatomical collections for contemporary museums].

    Science.gov (United States)

    Nesi, Gabriella; Santi, Raffaella

    2013-01-01

    Anatomy and Pathology Museum collections display a great biological value and offer unique samples for research purposes. Pathological specimens may be investigated by means of modern radiological and molecular biology techniques in order to provide the etiological background of disease, with relevance to present-day knowledge. Meanwhile, historical resources provide epidemiologic data regarding the socio-economic conditions of the resident populations, the more frequently encountered illnesses and dietary habits. These multidisciplinary approaches lead to more accurate diagnoses also allowing new strategies in cataloguing and musealization of anatomical specimens. Further, once these data are gathered, they may constitute the basis of riedited Museum catalogues feasible to be digitalized and displayed via the Web.

  19. Biologic mesh for abdominal wall reconstruction

    Directory of Open Access Journals (Sweden)

    King KS

    2014-11-01

    Full Text Available Kathryn S King,1 Frank P Albino,2 Parag Bhanot3 1School of Medicine, Georgetown University Hospital, Washington, DC, USA; 2Department of Plastic Surgery, 3Department of General Surgery, Georgetown University Hospital, Washington, DC, USA Background: Mesh reinforcement significantly decreases rates of recurrence following ventral hernia repair. Historically, biologic mesh was touted as superior in the setting of infection; however, selecting the appropriate mesh for a given clinical scenario is often a matter of debate. The purpose of this review is to highlight a number of the more commonly used biologic mesh products with a review of outcomes from the current literature. Methods: Outcomes following abdominal wall reconstruction using biologic mesh were reviewed for acellular cadaveric human dermis, cross-linked porcine dermis, non-cross-linked porcine dermis, porcine small intestine submucosa, acellular bovine pericardial, and acellular bovine dermal mesh. Studies with rigorous methods, adequate patient samples, and sufficient follow-up were selected for review. Results: Hernia recurrence rates following biologic mesh reinforcement vary widely. Porcine small intestine submucosa and bovine pericardium were associated with the lowest hernia recurrence rates. Porcine cross-linked dermal mesh products resulted in higher rates of adhesion formation and lower rates of tissue incorporation compared to non-cross-linked porcine mesh. Conclusion: Successful ventral hernia repair can be achieved with acceptable complications rates for each of the reviewed mesh products. Biologic meshes have an advantage over synthetic mesh in contaminated wounds but their use may not be cost-effective in all patient populations. Those with and/or at high risk for wound complications may also undergo repair with biologic mesh. Keywords: biologic mesh, ventral hernia repair, acellular dermal matrix 

  20. FEM-based simulation of a fluorescence tomography experiment using anatomical MR images

    Science.gov (United States)

    Ren, Wuwei; Elmer, Andreas; Augath, Mark-Aurel; Rudin, Markus

    2016-03-01

    A hybrid system combining fluorescence molecular tomography (FMT) and magnetic resonance imaging (MRI) is attractive for preclinical imaging as it allows fusion of molecular information derived from FMT and anatomical reference data derived from MRI. We have previously developed such a system and demonstrated its performance in biological applications. For reconstruction slab geometry with homogeneous optical parameters was assumed, which led to undesirable artifacts. In order to exploit the power of the hybrid system, the use of MRI derived anatomical information, as a constraint for FMT reconstruction, appears logical. Heterogeneity of tissues and irregular surface derived from MRI can be accounted for by generating a mesh using the finite element method (FEM), and attributing optical parameters to individual mesh points. We have established a forward simulation tool based on TOAST++ to mimic an FMT experiment. MRI images were recorded on a 9.4T MR scanner using a T1-weighted pulse sequence. The voxelized dataset was processed by iso2mesh to yield a 3D-mesh. Four steps of FMT simulation were included: 1) Assignment of optical properties, 2) Specification of boundary conditions and generation of 3) excitation and 4) emission maps. FEM-derived results were compared with those obtained using the analytical solution of Green's function and with experimental data with a single fluorescent inclusion in a silicon phantom. Once, the forward modeling method is properly validated it will be used as a central element of a reconstruction algorithm for analyzing data derived from a hybrid FMT/MRI setup.

  1. Anisotropic Diffusion in Mesh-Free Numerical Magnetohydrodynamics

    CERN Document Server

    Hopkins, Philip F

    2016-01-01

    We extend recently-developed mesh-free Lagrangian methods for numerical magnetohydrodynamics (MHD) to arbitrary anisotropic diffusion equations, including: passive scalar diffusion, Spitzer-Braginskii conduction and viscosity, cosmic ray diffusion/streaming, anisotropic radiation transport, non-ideal MHD (Ohmic resistivity, ambipolar diffusion, the Hall effect), and turbulent 'eddy diffusion.' We study these as implemented in the code GIZMO for both new meshless finite-volume Godunov schemes (MFM/MFV) as well as smoothed-particle hydrodynamics (SPH). We show the MFM/MFV methods are accurate and stable even with noisy fields and irregular particle arrangements, and recover the correct behavior even in arbitrarily anisotropic cases. They are competitive with state-of-the-art AMR/moving-mesh methods, and can correctly treat anisotropic diffusion-driven instabilities (e.g. the MTI and HBI, Hall MRI). We also develop a new scheme for stabilizing anisotropic tensor-valued fluxes with high-order gradient estimators ...

  2. Improved AFEM algorithm for bioluminescence tomography based on dual-mesh alternation strategy

    Institute of Scientific and Technical Information of China (English)

    Wei Li; Heng Zhao; Xiaochao Qu; Yanbin Hou; Xueli Chen; Duofang Chen; Xiaowei He; Qitan Zhang; Jimin Liang

    2012-01-01

    Adaptive finite element method (AFEM) is broadly adopted to recover the internal source in biological tissues.In this letter,a novel dual-mesh alternation strategy (dual-mesh AFEM) is developed for bioluminescence tomography.By comprehensively considering the error estimation of the finite element method solution on each mesh,two different adaptive strategies based on the error indicator of the reconstructed source and the photon flux density are used alternately in the process.Combined with the constantly adjusted permissible region in the adaptive process,the new algorithm can achieve a more accurate source location compared with the AFEM in the previous experiments.%Adaptive finite element method (AFEM) is broadly adopted to recover the internal source in biological tissues. In this letter, a novel dual-mesh alternation strategy (dual-mesh AFEM) is developed for biolumi-nescence tomography. By comprehensively considering the error estimation of the finite element method solution on each mesh, two different adaptive strategies based on the error indicator of the reconstructed source and the photon flux density are used alternately in the process. Combined with the constantly adjusted permissible region in the adaptive process, the new algorithm can achieve a more accurate source location compared with the AFEM in the previous experiments.

  3. Mesh Size Effect in Numerical Simulation of Blast Wave Propagation and Interaction with Structures

    Institute of Scientific and Technical Information of China (English)

    SHI Yanchao; LI Zhongxian; HAO Hong

    2008-01-01

    Numerical method is popular in analysing the blast wave propagation and interaction with structures.However, because of the extremely short duration of blast wave and energy transmission between different grids, the numerical results are sensitive to the finite element mesh size.Previous numerical simulations show that a mesh size acceptable to one blast scenario might not be proper for another case, even though the difference between the two scenarios is very small,indicating a simple numerical mesh size convergence test might not be enough to guarantee accurate numerical results.Therefore, both coarse mesh and fine mesh were used in different blast scenarios to investigate the mesh size effect on numerical results of blast wave propagation and interaction with structures.Based on the numerical results and their comparison with field test results and the design charts in TM5-1300, a numerical modification method was proposed to correct the influence of the mesh size on the simulated results.It can be easily used to improve the accuracy of the numerical results of blast wave propagation and blast loads on structures.

  4. Development of a pregnant woman phantom using polygonal mesh, for dosimetric evaluations

    Energy Technology Data Exchange (ETDEWEB)

    Cabral, Manuela O.M.; Vieira, Jose W., E-mail: manuela.omc@gmail.com [Universidade Federal de Pernambuco (DEN/UFPE), Recife, PE (Brazil). Departamento de Energia Nuclear; Leal Neto, Viriato, E-mail: viriatoleal@yahoo.com.br [Instituto Federal de Educacao, Ciencia e Tecnologia de Pernambuco (IFPE), Recife, PE (Brazil); Lima, Fernando R.A., E-mail: falima@cnen.gov.br [Centro Regional de Ciencias Nucleares do Nordeste (CRCN-NE/CNEN-PE), Recife, PE (Brazil)

    2014-07-01

    Due to the embryo/fetus radiosensitivity the accurate estimation of the absorbed dose distribution in the abdominal area is an additional problem caused by the exposure of pregnant women to ionizing radiation in medical applications. This paper reports the construction and insertion of a fetal representation in a female geometry by means of 3D modeling techniques. In order to characterize an ECM the Grupo de Dosimetria Numerica (GDN) is using, mainly, simulators emitting gamma sources and voxel phantoms coupled to a MC code. The phantoms are predominantly constructed from stacks of magnetic resonance images (MRI), computed tomography (CT) (obtained from scans of real patients) or from 3D modeling techniques. Due to the difficulty of obtaining medical images of pregnant women, 3D objects in several formats (.obj, .max, .blend, etc.) were acquired for anatomical representation of a non-pregnant adult. To construct a fetal representation, the 3D modeling technique called Poly Modeling (polygon mesh) was used inside of the software Autodesk 3ds Max 2014 (free student version). Information about the radiosensibility of organs included in the abdominal area will be used to fit and use the pregnant phantom in numerical dosimetry. For this, the phantom will be voxelized and the masses of organs of interest will be adjusted according to data provided by International Commission on Radiological Protection (ICRP). Finally, the phantom will be coupled to a MC code creating a MCE that will serve as base for the construction of several other models involving pregnant women submitted to ionizing radiation. (author)

  5. Development of a pregnant woman phantom using polygonal mesh, for dosimetric evaluations

    International Nuclear Information System (INIS)

    Due to the embryo/fetus radiosensitivity the accurate estimation of the absorbed dose distribution in the abdominal area is an additional problem caused by the exposure of pregnant women to ionizing radiation in medical applications. This paper reports the construction and insertion of a fetal representation in a female geometry by means of 3D modeling techniques. In order to characterize an ECM the Grupo de Dosimetria Numerica (GDN) is using, mainly, simulators emitting gamma sources and voxel phantoms coupled to a MC code. The phantoms are predominantly constructed from stacks of magnetic resonance images (MRI), computed tomography (CT) (obtained from scans of real patients) or from 3D modeling techniques. Due to the difficulty of obtaining medical images of pregnant women, 3D objects in several formats (.obj, .max, .blend, etc.) were acquired for anatomical representation of a non-pregnant adult. To construct a fetal representation, the 3D modeling technique called Poly Modeling (polygon mesh) was used inside of the software Autodesk 3ds Max 2014 (free student version). Information about the radiosensibility of organs included in the abdominal area will be used to fit and use the pregnant phantom in numerical dosimetry. For this, the phantom will be voxelized and the masses of organs of interest will be adjusted according to data provided by International Commission on Radiological Protection (ICRP). Finally, the phantom will be coupled to a MC code creating a MCE that will serve as base for the construction of several other models involving pregnant women submitted to ionizing radiation. (author)

  6. Developing a new high energy absorption mesh

    Energy Technology Data Exchange (ETDEWEB)

    Potvin, Y.; Giles, G. [University of Western Australia, Crawley, WA (Australia)

    2009-10-01

    One of the main tools used by mining operations to mitigate the risk of rockburst is the installation of a so-called 'dynamic resistant' ground support system to absorb the impact of shock waves from mine induced seismic events. Ground support systems are composed of rock reinforcement (rock bolts or cable bolts) and surface support (mesh or shotcrete). Shotcrete is strong but not flexible, normal weld-mesh has some flexibility but is not very strong. The Australian Centre for Geomechanics in collaboration with Onesteel Reinforcing Pty Ltd. is currently working on a new high energy absorption mesh that combines strength and flexibility. The new mesh can be installed with a Jumbo drill, in a similar way as the widely used sheet of weld-mesh. The paper describes the development of this the mesh systems. 8 refs., 12 figs.

  7. Association Discovery Protocol for Hybrid Wireless Mesh Networks

    OpenAIRE

    Adjih, Cédric; Cho, Song Yean; Jacquet, Philippe

    2006-01-01

    Wireless mesh networks (WMNs) consist of two kinds of nodes: mesh routers which form the backbones of WMNs and mesh clients which associate with mesh routers to access networks. Because of the discrepancy between mesh routers and mesh clients, WMNs have a hybrid structure. Their hybrid structure presents an opportunity to integrate WMNs with different networks such as wireless LAN, Bluetooth and sensor networks through bridging functions in mesh routers. Because of the ability to integrate va...

  8. Transport of phase space densities through tetrahedral meshes using discrete flow mapping

    CERN Document Server

    Bajars, Janis; Sondergaard, Niels; Tanner, Gregor

    2016-01-01

    Discrete flow mapping was recently introduced as an efficient ray based method determining wave energy distributions in complex built up structures. Wave energy densities are transported along ray trajectories through polygonal mesh elements using a finite dimensional approximation of a ray transfer operator. In this way the method can be viewed as a smoothed ray tracing method defined over meshed surfaces. Many applications require the resolution of wave energy distributions in three-dimensional domains, such as in room acoustics, underwater acoustics and for electromagnetic cavity problems. In this work we extend discrete flow mapping to three-dimensional domains by propagating wave energy densities through tetrahedral meshes. The geometric simplicity of the tetrahedral mesh elements is utilised to efficiently compute the ray transfer operator using a mixture of analytic and spectrally accurate numerical integration. The important issue of how to choose a suitable basis approximation in phase space whilst m...

  9. Quadrilateral mesh fitting that preserves sharp features based on multi-normals for Laplacian energy

    Directory of Open Access Journals (Sweden)

    Yusuke Imai

    2014-04-01

    Full Text Available Because the cost of performance testing using actual products is expensive, manufacturers use lower-cost computer-aided design simulations for this function. In this paper, we propose using hexahedral meshes, which are more accurate than tetrahedral meshes, for finite element analysis. We propose automatic hexahedral mesh generation with sharp features to precisely represent the corresponding features of a target shape. Our hexahedral mesh is generated using a voxel-based algorithm. In our previous works, we fit the surface of the voxels to the target surface using Laplacian energy minimization. We used normal vectors in the fitting to preserve sharp features. However, this method could not represent concave sharp features precisely. In this proposal, we improve our previous Laplacian energy minimization by adding a term that depends on multi-normal vectors instead of using normal vectors. Furthermore, we accentuate a convex/concave surface subset to represent concave sharp features.

  10. Towards Perceptual Quality Evaluation of Dynamic Meshes

    OpenAIRE

    Torkhani, Fakhri; Wang, Kai; Montanvert, Annick

    2011-01-01

    In practical applications, it is common that a 3D mesh undergoes some lossy operations. Since the end users of 3D meshes are often human beings, it is thus important to derive metrics that can faithfully assess the perceptual distortions induced by these operations. Like in the case of image quality assessment, metrics based on mesh geometric distances (e.g. Hausdorff distance and root mean squared error) cannot correctly predict the visual quality degradation. Recently, several perceptually-...

  11. Unstructured Polyhedral Mesh Thermal Radiation Diffusion

    Energy Technology Data Exchange (ETDEWEB)

    Palmer, T.S.; Zika, M.R.; Madsen, N.K.

    2000-07-27

    Unstructured mesh particle transport and diffusion methods are gaining wider acceptance as mesh generation, scientific visualization and linear solvers improve. This paper describes an algorithm that is currently being used in the KULL code at Lawrence Livermore National Laboratory to solve the radiative transfer equations. The algorithm employs a point-centered diffusion discretization on arbitrary polyhedral meshes in 3D. We present the results of a few test problems to illustrate the capabilities of the radiation diffusion module.

  12. Delaunay triangulation and computational fluid dynamics meshes

    Science.gov (United States)

    Posenau, Mary-Anne K.; Mount, David M.

    1992-01-01

    In aerospace computational fluid dynamics (CFD) calculations, the Delaunay triangulation of suitable quadrilateral meshes can lead to unsuitable triangulated meshes. Here, we present case studies which illustrate the limitations of using structured grid generation methods which produce points in a curvilinear coordinate system for subsequent triangulations for CFD applications. We discuss conditions under which meshes of quadrilateral elements may not produce a Delaunay triangulation suitable for CFD calculations, particularly with regard to high aspect ratio, skewed quadrilateral elements.

  13. Unstructured Polyhedral Mesh Thermal Radiation Diffusion

    International Nuclear Information System (INIS)

    Unstructured mesh particle transport and diffusion methods are gaining wider acceptance as mesh generation, scientific visualization and linear solvers improve. This paper describes an algorithm that is currently being used in the KULL code at Lawrence Livermore National Laboratory to solve the radiative transfer equations. The algorithm employs a point-centered diffusion discretization on arbitrary polyhedral meshes in 3D. We present the results of a few test problems to illustrate the capabilities of the radiation diffusion module

  14. Anatomical structure of Polystichum Roth ferns rachises

    Directory of Open Access Journals (Sweden)

    Oksana V. Tyshchenko

    2012-03-01

    Full Text Available The morpho-anatomical characteristics of rachis cross sections of five Polystichum species is presented. The main and auxiliary anatomical features which help to distinguish investigated species are revealed.

  15. Converting skeletal structures to quad dominant meshes

    DEFF Research Database (Denmark)

    Bærentzen, Jakob Andreas; Misztal, Marek Krzysztof; Welnicka, Katarzyna

    2012-01-01

    We propose the Skeleton to Quad-dominant polygonal Mesh algorithm (SQM), which converts skeletal structures to meshes composed entirely of polar and annular regions. Both types of regions have a regular structure where all faces are quads except for a single ring of triangles at the center of each...... polar region. The algorithm produces high quality meshes which contain irregular vertices only at the poles or where several regions join. It is trivial to produce a stripe parametrization for the output meshes which also lend themselves well to polar subdivision. After an initial description of SQM, we...

  16. Self Organizing Wireless Mesh Network

    Directory of Open Access Journals (Sweden)

    P. Sharnya

    2013-06-01

    Full Text Available A communication network with radio nodes which is organized in a mesh topology is called as wireless mesh network or WMN. They are used for variety application such as building automation, transportation, citywide wireless Internet services etc. The WMN experience link failure due to application bandwidth demands, channel interference etc. These failures will cause performance degradation. Reconfiguration is needed to preserve the network from dynamic link failure. The most of the existing algorithms are not able to give full improvement at the time of dynamic link failure. The resource allocation require global configuration changes, greedy channel assignment algorithm might not be able to realize full improvement. The proposed work is for reconfigure the network at the time of dynamic link failure. Autonomous reconfiguration system (ARS is used to reconfigure the network. The system generates necessary changes in channel assignment in order to recover from link failure. The performance is evaluated using different types of quality parameters such as throughput, PDR, delay. Comparing with existing schemes this will provide fast recovery.

  17. Anatomic study of infrapopliteal vessels.

    Science.gov (United States)

    Lappas, D; Stavropoulos, N A; Noussios, G; Sakellariou, V; Skandalakis, P

    2012-08-01

    The purpose of this project is to study and analyse the anatomical variations of the infrapopliteal vessels concerning their branching pattern. A reliable sample of one hundred formalin-fixed adult cadavers was dissected by the Anatomical Laboratory of Athens University. The variations can be classified in the following way: the normal branching of the popliteal artery was present in 90%. The remainder revealed variant branching patterns: hypoplastic or aplastic posterior tibial artery and the pedis arteries arising from the peroneal (3%); hypoplastic or aplastic anterior tibial artery (1.5%); and the dorsalis pedis formed by two equal branches, arising from the peroneal and the anterior tibial artery (2%). The variations were more frequent in females and in short-height individuals. Knowledge of these variations is rather important for any invasive technic concerning lower extremities.

  18. Mesh Exposure and Associated Risk Factors in Women Undergoing Transvaginal Prolapse Repair with Mesh

    Directory of Open Access Journals (Sweden)

    Elizabeth A. Frankman

    2013-01-01

    Full Text Available Objective. To determine frequency, rate, and risk factors associated with mesh exposure in women undergoing transvaginal prolapse repair with polypropylene mesh. Methods. Retrospective chart review was performed for all women who underwent Prolift Pelvic Floor Repair System (Gynecare, Somerville, NJ between September 2005 and September 2008. Multivariable logistic regression was performed to identify risk factors for mesh exposure. Results. 201 women underwent Prolift. Mesh exposure occurred in 12% (24/201. Median time to mesh exposure was 62 days (range: 10–372. When mesh was placed in the anterior compartment, the frequency of mesh exposure was higher than that when mesh was placed in the posterior compartment (8.7% versus 2.9%, P=0.04. Independent risk factors for mesh exposure were diabetes (AOR = 7.7, 95% CI 1.6–37.6; P=0.01 and surgeon (AOR = 7.3, 95% CI 1.9–28.6; P=0.004. Conclusion. Women with diabetes have a 7-fold increased risk for mesh exposure after transvaginal prolapse repair using Prolift. The variable rate of mesh exposure amongst surgeons may be related to technique. The anterior vaginal wall may be at higher risk of mesh exposure as compared to the posterior vaginal wall.

  19. Mesh Geometric Editing Approach Based on Gpu Texture

    Directory of Open Access Journals (Sweden)

    Guiping Qian

    2012-09-01

    Full Text Available This paper presents a novel interactive mesh editing approach based on GPU texture mapping. The main feature is that it copies 2D surface geometry information to GPU frame buffer. The planar mesh information is transformed into GPU texture and placed on apposite position of target mesh. 3D information is retrieved after stitching two mesh components from the primitive vertex coordinates. When running real-time mesh cloning operator, our mesh editing approach can copy arbitrary irregular geometric features from source mesh to target mesh. Experimental results indicate that our method can outperform previous related mesh editing techniques.

  20. A unified framework for mesh refinement in random and physical space

    Science.gov (United States)

    Li, Jing; Stinis, Panos

    2016-10-01

    In recent work we have shown how an accurate reduced model can be utilized to perform mesh refinement in random space. That work relied on the explicit knowledge of an accurate reduced model which is used to monitor the transfer of activity from the large to the small scales of the solution. Since this is not always available, we present in the current work a framework which shares the merits and basic idea of the previous approach but does not require an explicit knowledge of a reduced model. Moreover, the current framework can be applied for refinement in both random and physical space. In this manuscript we focus on the application to random space mesh refinement. We study examples of increasing difficulty (from ordinary to partial differential equations) which demonstrate the efficiency and versatility of our approach. We also provide some results from the application of the new framework to physical space mesh refinement.

  1. Key technologies for high-accuracy large mesh antenna reflectors

    Science.gov (United States)

    Meguro, Akira; Harada, Satoshi; Watanabe, Mitsunobu

    2003-12-01

    Nippon Telephone and Telegram Corporation (NTT) continues to develop the modular mesh-type deployable antenna. Antenna diameter can be changed from 5 m to about 20 m by changing the number of modules used with surface accuracy better than 2.4 mm RMS (including all error factors) with sufficient deployment reliability. Key technologies are the antenna's structural design, the deployment mechanism, the design tool, the analysis tool, and modularized testing/evaluation methods. This paper describes our beam steering mechanism. Tests show that it yields a beam pointing accuracy of better than 0.1°. Based on the S-band modular mesh antenna reflector, the surface accuracy degradation factors that must be considered in designing the new antenna are partially identified. The influence of modular connection errors on surface accuracy is quantitatively estimated. Our analysis tool SPADE is extended to include the addition of joint gaps. The addition of gaps allows non-linear vibration characteristics due to gapping in deployment hinges to be calculated. We intend to design a new type of mesh antenna reflector. Our new goal is an antenna for Ku or Ka band satellite communication. For this mission, the surface shape must be 5 times more accurate than is required for an S-band antenna.

  2. Adaptive mesh refinement in titanium

    Energy Technology Data Exchange (ETDEWEB)

    Colella, Phillip; Wen, Tong

    2005-01-21

    In this paper, we evaluate Titanium's usability as a high-level parallel programming language through a case study, where we implement a subset of Chombo's functionality in Titanium. Chombo is a software package applying the Adaptive Mesh Refinement methodology to numerical Partial Differential Equations at the production level. In Chombo, the library approach is used to parallel programming (C++ and Fortran, with MPI), whereas Titanium is a Java dialect designed for high-performance scientific computing. The performance of our implementation is studied and compared with that of Chombo in solving Poisson's equation based on two grid configurations from a real application. Also provided are the counts of lines of code from both sides.

  3. Additive Manufacturing of Anatomical Models from Computed Tomography Scan Data.

    Science.gov (United States)

    Gür, Y

    2014-12-01

    The purpose of the study presented here was to investigate the manufacturability of human anatomical models from Computed Tomography (CT) scan data via a 3D desktop printer which uses fused deposition modelling (FDM) technology. First, Digital Imaging and Communications in Medicine (DICOM) CT scan data were converted to 3D Standard Triangle Language (STL) format by using In Vaselius digital imaging program. Once this STL file is obtained, a 3D physical version of the anatomical model can be fabricated by a desktop 3D FDM printer. As a case study, a patient's skull CT scan data was considered, and a tangible version of the skull was manufactured by a 3D FDM desktop printer. During the 3D printing process, the skull was built using acrylonitrile-butadiene-styrene (ABS) co-polymer plastic. The printed model showed that the 3D FDM printing technology is able to fabricate anatomical models with high accuracy. As a result, the skull model can be used for preoperative surgical planning, medical training activities, implant design and simulation to show the potential of the FDM technology in medical field. It will also improve communication between medical stuff and patients. Current result indicates that a 3D desktop printer which uses FDM technology can be used to obtain accurate anatomical models.

  4. Resolution of the Gross-Pitaevskii equation with the imaginary-time method on a Lagrange mesh.

    Science.gov (United States)

    Baye, D; Sparenberg, J-M

    2010-11-01

    The Lagrange-mesh method is an approximate variational calculation which has the simplicity of a mesh calculation. Combined with the imaginary-time method, it is applied to the iterative resolution of the Gross-Pitaevskii equation. Two variants of a fourth-order factorization of the exponential of the Hamiltonian and two types of mesh (Lagrange-Hermite and Lagrange-sinc) are employed and compared. The accuracy is checked with the help of these comparisons and of the virial theorem. The Lagrange-Hermite mesh provides very accurate results with short computing times for values of the dimensionless parameter of the nonlinear term up to 10⁴. For higher values up to 10⁷, the Lagrange-sinc mesh is more efficient. Examples are given for anisotropic and nonseparable trapping potentials. PMID:21230613

  5. Resolution of the Gross-Pitaevskii equation with the imaginary-time method on a Lagrange mesh.

    Science.gov (United States)

    Baye, D; Sparenberg, J-M

    2010-11-01

    The Lagrange-mesh method is an approximate variational calculation which has the simplicity of a mesh calculation. Combined with the imaginary-time method, it is applied to the iterative resolution of the Gross-Pitaevskii equation. Two variants of a fourth-order factorization of the exponential of the Hamiltonian and two types of mesh (Lagrange-Hermite and Lagrange-sinc) are employed and compared. The accuracy is checked with the help of these comparisons and of the virial theorem. The Lagrange-Hermite mesh provides very accurate results with short computing times for values of the dimensionless parameter of the nonlinear term up to 10⁴. For higher values up to 10⁷, the Lagrange-sinc mesh is more efficient. Examples are given for anisotropic and nonseparable trapping potentials.

  6. 7th International Meshing Roundtable '98

    Energy Technology Data Exchange (ETDEWEB)

    Eldred, T.J.

    1998-10-01

    The goal of the 7th International Meshing Roundtable is to bring together researchers and developers from industry, academia, and government labs in a stimulating, open environment for the exchange of technical information related to the meshing process. In the past, the Roundtable has enjoyed significant participation from each of these groups from a wide variety of countries.

  7. Optimal Point Placement for Mesh Smoothing

    OpenAIRE

    Amenta, Nina; Bern, Marshall; Eppstein, David

    1998-01-01

    We study the problem of moving a vertex in an unstructured mesh of triangular, quadrilateral, or tetrahedral elements to optimize the shapes of adjacent elements. We show that many such problems can be solved in linear time using generalized linear programming. We also give efficient algorithms for some mesh smoothing problems that do not fit into the generalized linear programming paradigm.

  8. Coupling of unstructured TLM and BEM for accurate 2D electromagnetic simulation

    OpenAIRE

    Simmons, Daniel; Cools, Kristof; Sewell, Phillip

    2015-01-01

    In this paper the hybridisation of the 2D time-domain boundary element method (BEM) with the unstructured transmission line method (UTLM) will be introduced, which enables accurate modeling of radiating boundary conditions and plane wave excitations of uniform and non-uniform targets modelled by geometrically accurate unstructured meshes. The method is demonstrated by comparing numerical results against analytical results.

  9. Adaptive radial basis function mesh deformation using data reduction

    Science.gov (United States)

    Gillebaart, T.; Blom, D. S.; van Zuijlen, A. H.; Bijl, H.

    2016-09-01

    Radial Basis Function (RBF) mesh deformation is one of the most robust mesh deformation methods available. Using the greedy (data reduction) method in combination with an explicit boundary correction, results in an efficient method as shown in literature. However, to ensure the method remains robust, two issues are addressed: 1) how to ensure that the set of control points remains an accurate representation of the geometry in time and 2) how to use/automate the explicit boundary correction, while ensuring a high mesh quality. In this paper, we propose an adaptive RBF mesh deformation method, which ensures the set of control points always represents the geometry/displacement up to a certain (user-specified) criteria, by keeping track of the boundary error throughout the simulation and re-selecting when needed. Opposed to the unit displacement and prescribed displacement selection methods, the adaptive method is more robust, user-independent and efficient, for the cases considered. Secondly, the analysis of a single high aspect ratio cell is used to formulate an equation for the correction radius needed, depending on the characteristics of the correction function used, maximum aspect ratio, minimum first cell height and boundary error. Based on the analysis two new radial basis correction functions are derived and proposed. This proposed automated procedure is verified while varying the correction function, Reynolds number (and thus first cell height and aspect ratio) and boundary error. Finally, the parallel efficiency is studied for the two adaptive methods, unit displacement and prescribed displacement for both the CPU as well as the memory formulation with a 2D oscillating and translating airfoil with oscillating flap, a 3D flexible locally deforming tube and deforming wind turbine blade. Generally, the memory formulation requires less work (due to the large amount of work required for evaluating RBF's), but the parallel efficiency reduces due to the limited

  10. Mesh deformation based on artificial neural networks

    Science.gov (United States)

    Stadler, Domen; Kosel, Franc; Čelič, Damjan; Lipej, Andrej

    2011-09-01

    In the article a new mesh deformation algorithm based on artificial neural networks is introduced. This method is a point-to-point method, meaning that it does not use connectivity information for calculation of the mesh deformation. Two already known point-to-point methods, based on interpolation techniques, are also presented. In contrast to the two known interpolation methods, the new method does not require a summation over all boundary nodes for one displacement calculation. The consequence of this fact is a shorter computational time of mesh deformation, which is proven by different deformation tests. The quality of the deformed meshes with all three deformation methods was also compared. Finally, the generated and the deformed three-dimensional meshes were used in the computational fluid dynamics numerical analysis of a Francis water turbine. A comparison of the analysis results was made to prove the applicability of the new method in every day computation.

  11. Characteristics of Mesh Wave Impedance in FDTD Non-Uniform Mesh

    Institute of Scientific and Technical Information of China (English)

    REN Wu; LIU Bo; GAO Ben-qing

    2005-01-01

    In order to increase the evaluating precision of mesh reflection wave, the mesh wave impedance(MWI) is extended to the non-uniform mesh in 1-D and 2-D cases for the first time on the basis of the Yee's positional relation for electromagnetic field components. Lots of characteristics are obtained for different mesh sizes and frequencies. Then the reflection coefficient caused by the non-uniform mesh can be calculated according to the theory of equivalent transmission line. By comparing it with that calculated by MWI in the uniform mesh, it is found that the evaluating error can be largely reduced and is in good agreement with that directly computed by FDTD method. And this extension of MWI can be used in the error analysis of complex mesh.

  12. Update on Development of Mesh Generation Algorithms in MeshKit

    Energy Technology Data Exchange (ETDEWEB)

    Jain, Rajeev [Argonne National Lab. (ANL), Argonne, IL (United States); Vanderzee, Evan [Argonne National Lab. (ANL), Argonne, IL (United States); Mahadevan, Vijay [Argonne National Lab. (ANL), Argonne, IL (United States)

    2015-09-30

    MeshKit uses a graph-based design for coding all its meshing algorithms, which includes the Reactor Geometry (and mesh) Generation (RGG) algorithms. This report highlights the developmental updates of all the algorithms, results and future work. Parallel versions of algorithms, documentation and performance results are reported. RGG GUI design was updated to incorporate new features requested by the users; boundary layer generation and parallel RGG support were added to the GUI. Key contributions to the release, upgrade and maintenance of other SIGMA1 libraries (CGM and MOAB) were made. Several fundamental meshing algorithms for creating a robust parallel meshing pipeline in MeshKit are under development. Results and current status of automated, open-source and high quality nuclear reactor assembly mesh generation algorithms such as trimesher, quadmesher, interval matching and multi-sweeper are reported.

  13. A moving mesh unstaggered constrained transport scheme for magnetohydrodynamics

    Science.gov (United States)

    Mocz, Philip; Pakmor, Rüdiger; Springel, Volker; Vogelsberger, Mark; Marinacci, Federico; Hernquist, Lars

    2016-08-01

    We present a constrained transport (CT) algorithm for solving the 3D ideal magnetohydrodynamic (MHD) equations on a moving mesh, which maintains the divergence-free condition on the magnetic field to machine-precision. Our CT scheme uses an unstructured representation of the magnetic vector potential, making the numerical method simple and computationally efficient. The scheme is implemented in the moving mesh code AREPO. We demonstrate the performance of the approach with simulations of driven MHD turbulence, a magnetized disc galaxy, and a cosmological volume with primordial magnetic field. We compare the outcomes of these experiments to those obtained with a previously implemented Powell divergence-cleaning scheme. While CT and the Powell technique yield similar results in idealized test problems, some differences are seen in situations more representative of astrophysical flows. In the turbulence simulations, the Powell cleaning scheme artificially grows the mean magnetic field, while CT maintains this conserved quantity of ideal MHD. In the disc simulation, CT gives slower magnetic field growth rate and saturates to equipartition between the turbulent kinetic energy and magnetic energy, whereas Powell cleaning produces a dynamically dominant magnetic field. Such difference has been observed in adaptive-mesh refinement codes with CT and smoothed-particle hydrodynamics codes with divergence-cleaning. In the cosmological simulation, both approaches give similar magnetic amplification, but Powell exhibits more cell-level noise. CT methods in general are more accurate than divergence-cleaning techniques, and, when coupled to a moving mesh can exploit the advantages of automatic spatial/temporal adaptivity and reduced advection errors, allowing for improved astrophysical MHD simulations.

  14. Anatomically based lower limb nerve model for electrical stimulation

    Directory of Open Access Journals (Sweden)

    Soboleva Tanya K

    2007-12-01

    Full Text Available Abstract Background Functional Electrical Stimulation (FES is a technique that aims to rehabilitate or restore functionality of skeletal muscles using external electrical stimulation. Despite the success achieved within the field of FES, there are still a number of questions that remain unanswered. One way of providing input to the answers is through the use of computational models. Methods This paper describes the development of an anatomically based computer model of the motor neurons in the lower limb of the human leg and shows how it can be used to simulate electrical signal propagation from the beginning of the sciatic nerve to a skeletal muscle. One-dimensional cubic Hermite finite elements were used to represent the major portions of the lower limb nerves. These elements were fit to data that had been digitised using images from the Visible Man project. Nerves smaller than approximately 1 mm could not be seen in the images, and thus a tree-branching algorithm was used to connect the ends of the fitted nerve model to the respective skeletal muscle. To simulate electrical propagation, a previously published mammalian nerve model was implemented and solved on the anatomically based nerve mesh using a finite difference method. The grid points for the finite difference method were derived from the fitted finite element mesh. By adjusting the tree-branching algorithm, it is possible to represent different levels of motor-unit recruitment. Results To illustrate the process of a propagating nerve stimulus to a muscle in detail, the above method was applied to the nerve tree that connects to the human semitendinosus muscle. A conduction velocity of 89.8 m/s was obtained for a 15 μm diameter nerve fibre. This signal was successfully propagated down the motor neurons to a selected group of motor units in the muscle. Conclusion An anatomically and physiologically based model of the posterior motor neurons in the human lower limb was developed. This

  15. Adaptive mesh refinement and automatic remeshing in crystal plasticity finite element simulations

    International Nuclear Information System (INIS)

    In finite element simulations dedicated to the modelling of microstructure evolution, the mesh has to be fine enough to: (i) accurately describe the geometry of the constituents; (ii) capture local strain gradients stemming from the heterogeneity in material properties. In this paper, 3D polycrystalline aggregates are discretized into unstructured meshes and a level set framework is used to represent the grain boundaries. The crystal plasticity finite element method is used to simulate the plastic deformation of these aggregates. A mesh sensitivity analysis based on the deformation energy distribution shows that the predictions are, on average, more sensitive near grain boundaries. An anisotropic mesh refinement strategy based on the level set description is introduced and it is shown that it offers a good compromise between accuracy requirements on the one hand and computation time on the other hand. As the aggregates deform, mesh distortion inevitably occurs and ultimately causes the breakdown of the simulations. An automatic remeshing tool is used to periodically reconstruct the mesh and appropriate transfer of state variables is performed. It is shown that the diffusion related to data transfer is not significant. Finally, remeshing is performed repeatedly in a highly resolved 500 grains polycrystal subjected to about 90% thickness reduction in rolling. The predicted texture is compared with the experimental data and with the predictions of a standard Taylor model

  16. Multi-Dimensional, Compressible Viscous Flow on a Moving Voronoi Mesh

    CERN Document Server

    Muñoz, Diego; Marcus, Robert; Vogelsberger, Mark; Hernquist, Lars

    2012-01-01

    Numerous formulations of finite volume schemes for the Euler and Navier-Stokes equations exist, but in the majority of cases they have been developed for structured and stationary meshes. In many applications, more flexible mesh geometries that can dynamically adjust to the problem at hand and move with the flow in a (quasi) Lagrangian fashion would, however, be highly desirable, as this can allow a significant reduction of advection errors and an accurate realization of curved and moving boundary conditions. Here we describe a novel formulation of viscous continuum hydrodynamics that solves the equations of motion on a Voronoi mesh created by a set of mesh-generating points. The points can move in an arbitrary manner, but the most natural motion is that given by the fluid velocity itself, such that the mesh dynamically adjusts to the flow. Owing to the mathematical properties of the Voronoi tessellation, pathological mesh-twisting effects are avoided. Our implementation considers the full Navier-Stokes equat...

  17. Adaptive Shape Functions and Internal Mesh Adaptation for Modelling Progressive Failure in Adhesively Bonded Joints

    Science.gov (United States)

    Stapleton, Scott; Gries, Thomas; Waas, Anthony M.; Pineda, Evan J.

    2014-01-01

    Enhanced finite elements are elements with an embedded analytical solution that can capture detailed local fields, enabling more efficient, mesh independent finite element analysis. The shape functions are determined based on the analytical model rather than prescribed. This method was applied to adhesively bonded joints to model joint behavior with one element through the thickness. This study demonstrates two methods of maintaining the fidelity of such elements during adhesive non-linearity and cracking without increasing the mesh needed for an accurate solution. The first method uses adaptive shape functions, where the shape functions are recalculated at each load step based on the softening of the adhesive. The second method is internal mesh adaption, where cracking of the adhesive within an element is captured by further discretizing the element internally to represent the partially cracked geometry. By keeping mesh adaptations within an element, a finer mesh can be used during the analysis without affecting the global finite element model mesh. Examples are shown which highlight when each method is most effective in reducing the number of elements needed to capture adhesive nonlinearity and cracking. These methods are validated against analogous finite element models utilizing cohesive zone elements.

  18. Digital imaging in anatomic pathology.

    Science.gov (United States)

    O'Brien, M J; Sotnikov, A V

    1996-10-01

    Advances in computer technology continue to bring new innovations to departments of anatomic pathology. This article briefly reviews the present status of digital optical imaging, and explores the directions that this technology may lead over the next several years. Technical requirements for digital microscopic and gross imaging, and the available options for image archival and retrieval are summarized. The advantages of digital images over conventional photography in the conference room, and the usefulness of digital imaging in the frozen section suite and gross room, as an adjunct to surgical signout and as a resource for training and education, are discussed. An approach to the future construction of digital histologic sections and the computer as microscope is described. The digital technologic applications that are now available as components of the surgical pathologist's workstation are enumerated. These include laboratory information systems, computerized voice recognition, and on-line or CD-based literature searching, texts and atlases and, in some departments, on-line image databases. The authors suggest that, in addition to these resources that are already available, tomorrow's surgical pathology workstation will include network-linked digital histologic databases, on-line software for image analysis and 3-D image enhancement, expert systems, and ultimately, advanced pattern recognition capabilities. In conclusion, the authors submit that digital optical imaging is likely to have a significant and positive impact on the future development of anatomic pathology. PMID:8853053

  19. Mesh Surgery for Anterior Vaginal Wall Prolapse: A Meta-analysis.

    Science.gov (United States)

    Juliato, Cássia Raquel Teatin; Santos Júnior, Luiz Carlos do; Haddad, Jorge Milhem; Castro, Rodrigo Aquino; Lima, Marcelo; Castro, Edilson Benedito de

    2016-07-01

    Purpose Pelvic organ prolapse (POP) is a major health issue worldwide, affecting 6-8% of women. The most affected site is the anterior vaginal wall. Multiple procedures and surgical techniques have been used, with or without the use of vaginal meshes, due to common treatment failure, reoperations, and complication rates in some studies. Methods Systematic review of the literature and meta-analysis regarding the use of vaginal mesh in anterior vaginal wall prolapse was performed. A total of 115 papers were retrieved after using the medical subject headings (MESH) terms: 'anterior pelvic organ prolapse OR cystocele AND surgery AND (mesh or colporrhaphy)' in the PubMed database. Exclusion criteria were: follow-up shorter than 1 year, use of biological or absorbable meshes, and inclusion of other vaginal wall prolapses. Studies were put in a data chart by two independent editors; results found in at least two studies were grouped for analysis. Results After the review of the titles by two independent editors, 70 studies were discarded, and after abstract assessment, 18 trials were eligible for full text screening. For final screening and meta-analysis, after applying the Jadad score (> 2), 12 studies were included. Objective cure was greater in the mesh surgery group (odds ratio [OR] = 1,28 [1,07-1,53]), which also had greater blood loss (mean deviation [MD] = 45,98 [9,72-82,25]), longer surgery time (MD = 15,08 [0,48-29,67]), but less prolapse recurrence (OR = 0,22 [01,3-0,38]). Dyspareunia, symptom resolution and reoperation rates were not statistically different between groups. Quality of life (QOL) assessment through the pelvic organ prolapse/urinary incontinence sexual questionnaire (PISQ-12), the pelvic floor distress inventory (PFDI-20), the pelvic floor impact questionnaire (PFIQ-7), and the perceived quality of life scale (PQOL) was not significantly different. Conclusions Anterior vaginal prolapse mesh surgery has greater anatomic

  20. An adaptive mesh finite volume method for the Euler equations of gas dynamics

    Science.gov (United States)

    Mungkasi, Sudi

    2016-06-01

    The Euler equations have been used to model gas dynamics for decades. They consist of mathematical equations for the conservation of mass, momentum, and energy of the gas. For a large time value, the solution may contain discontinuities, even when the initial condition is smooth. A standard finite volume numerical method is not able to give accurate solutions to the Euler equations around discontinuities. Therefore we solve the Euler equations using an adaptive mesh finite volume method. In this paper, we present a new construction of the adaptive mesh finite volume method with an efficient computation of the refinement indicator. The adaptive method takes action automatically at around places having inaccurate solutions. Inaccurate solutions are reconstructed to reduce the error by refining the mesh locally up to a certain level. On the other hand, if the solution is already accurate, then the mesh is coarsened up to another certain level to minimize computational efforts. We implement the numerical entropy production as the mesh refinement indicator. As a test problem, we take the Sod shock tube problem. Numerical results show that the adaptive method is more promising than the standard one in solving the Euler equations of gas dynamics.

  1. 4D cone-beam CT reconstruction using multi-organ meshes for sliding motion modeling

    Science.gov (United States)

    Zhong, Zichun; Gu, Xuejun; Mao, Weihua; Wang, Jing

    2016-02-01

    A simultaneous motion estimation and image reconstruction (SMEIR) strategy was proposed for 4D cone-beam CT (4D-CBCT) reconstruction and showed excellent results in both phantom and lung cancer patient studies. In the original SMEIR algorithm, the deformation vector field (DVF) was defined on voxel grid and estimated by enforcing a global smoothness regularization term on the motion fields. The objective of this work is to improve the computation efficiency and motion estimation accuracy of SMEIR for 4D-CBCT through developing a multi-organ meshing model. Feature-based adaptive meshes were generated to reduce the number of unknowns in the DVF estimation and accurately capture the organ shapes and motion. Additionally, the discontinuity in the motion fields between different organs during respiration was explicitly considered in the multi-organ mesh model. This will help with the accurate visualization and motion estimation of the tumor on the organ boundaries in 4D-CBCT. To further improve the computational efficiency, a GPU-based parallel implementation was designed. The performance of the proposed algorithm was evaluated on a synthetic sliding motion phantom, a 4D NCAT phantom, and four lung cancer patients. The proposed multi-organ mesh based strategy outperformed the conventional Feldkamp-Davis-Kress, iterative total variation minimization, original SMEIR and single meshing method based on both qualitative and quantitative evaluations.

  2. Automated hexahedral mesh generation from biomedical image data: applications in limb prosthetics.

    Science.gov (United States)

    Zachariah, S G; Sanders, J E; Turkiyyah, G M

    1996-06-01

    A general method to generate hexahedral meshes for finite element analysis of residual limbs and similar biomedical geometries is presented. The method utilizes skeleton-based subdivision of cross-sectional domains to produce simple subdomains in which structured meshes are easily generated. Application to a below-knee residual limb and external prosthetic socket is described. The residual limb was modeled as consisting of bones, soft tissue, and skin. The prosthetic socket model comprised a socket wall with an inner liner. The geometries of these structures were defined using axial cross-sectional contour data from X-ray computed tomography, optical scanning, and mechanical surface digitization. A tubular surface representation, using B-splines to define the directrix and generator, is shown to be convenient for definition of the structure geometries. Conversion of cross-sectional data to the compact tubular surface representation is direct, and the analytical representation simplifies geometric querying and numerical optimization within the mesh generation algorithms. The element meshes remain geometrically accurate since boundary nodes are constrained to lie on the tubular surfaces. Several element meshes of increasing mesh density were generated for two residual limbs and prosthetic sockets. Convergence testing demonstrated that approximately 19 elements are required along a circumference of the residual limb surface for a simple linear elastic model. A model with the fibula absent compared with the same geometry with the fibula present showed differences suggesting higher distal stresses in the absence of the fibula. Automated hexahedral mesh generation algorithms for sliced data represent an advancement in prosthetic stress analysis since they allow rapid modeling of any given residual limb and optimization of mesh parameters.

  3. Polygonal Prism Mesh in the Viscous Layers for the Polyhedral Mesh Generator, PolyGen

    International Nuclear Information System (INIS)

    Polyhedral mesh has been known to have some benefits over the tetrahedral mesh. Efforts have been made to set up a polyhedral mesh generation system with open source programs SALOME and TetGen. The evaluation has shown that the polyhedral mesh generation system is promising. But it is necessary to extend the capability of the system to handle the viscous layers to be a generalized mesh generator. A brief review to the previous works on the mesh generation for the viscous layers will be made in section 2. Several challenging issues for the polygonal prism mesh generation will be discussed as well. The procedure to generate a polygonal prism mesh will be discussed in detail in section 3. Conclusion will be followed in section 4. A procedure to generate meshes in the viscous layers with PolyGen has been successfully designed. But more efforts have to be exercised to find the best way for the generating meshes for viscous layers. Using the extrusion direction of the STL data will the first of the trials in the near future

  4. Mesh optimization for microbial fuel cell cathodes constructed around stainless steel mesh current collectors

    KAUST Repository

    Zhang, Fang

    2011-02-01

    Mesh current collectors made of stainless steel (SS) can be integrated into microbial fuel cell (MFC) cathodes constructed of a reactive carbon black and Pt catalyst mixture and a poly(dimethylsiloxane) (PDMS) diffusion layer. It is shown here that the mesh properties of these cathodes can significantly affect performance. Cathodes made from the coarsest mesh (30-mesh) achieved the highest maximum power of 1616 ± 25 mW m-2 (normalized to cathode projected surface area; 47.1 ± 0.7 W m-3 based on liquid volume), while the finest mesh (120-mesh) had the lowest power density (599 ± 57 mW m-2). Electrochemical impedance spectroscopy showed that charge transfer and diffusion resistances decreased with increasing mesh opening size. In MFC tests, the cathode performance was primarily limited by reaction kinetics, and not mass transfer. Oxygen permeability increased with mesh opening size, accounting for the decreased diffusion resistance. At higher current densities, diffusion became a limiting factor, especially for fine mesh with low oxygen transfer coefficients. These results demonstrate the critical nature of the mesh size used for constructing MFC cathodes. © 2010 Elsevier B.V. All rights reserved.

  5. Automatic finite elements mesh generation from planar contours of the brain: an image driven 'blobby' approach

    CERN Document Server

    Bucki, M; Bucki, Marek; Payan, Yohan

    2005-01-01

    In this paper, we address the problem of automatic mesh generation for finite elements modeling of anatomical organs for which a volumetric data set is available. In the first step a set of characteristic outlines of the organ is defined manually or automatically within the volume. The outlines define the "key frames" that will guide the procedure of surface reconstruction. Then, based on this information, and along with organ surface curvature information extracted from the volume data, a 3D scalar field is generated. This field allows a 3D reconstruction of the organ: as an iso-surface model, using a marching cubes algorithm; or as a 3D mesh, using a grid "immersion" technique, the field value being used as the outside/inside test. The final reconstruction respects the various topological changes that occur within the organ, such as holes and branching elements.

  6. Engagement of Metal Debris into Gear Mesh

    Science.gov (United States)

    handschuh, Robert F.; Krantz, Timothy L.

    2010-01-01

    A series of bench-top experiments was conducted to determine the effects of metallic debris being dragged through meshing gear teeth. A test rig that is typically used to conduct contact fatigue experiments was used for these tests. Several sizes of drill material, shim stock and pieces of gear teeth were introduced and then driven through the meshing region. The level of torque required to drive the "chip" through the gear mesh was measured. From the data gathered, chip size sufficient to jam the mechanism can be determined.

  7. Markov Random Fields on Triangle Meshes

    DEFF Research Database (Denmark)

    Andersen, Vedrana; Aanæs, Henrik; Bærentzen, Jakob Andreas;

    2010-01-01

    In this paper we propose a novel anisotropic smoothing scheme based on Markov Random Fields (MRF). Our scheme is formulated as two coupled processes. A vertex process is used to smooth the mesh by displacing the vertices according to a MRF smoothness prior, while an independent edge process labels...... mesh edges according to a feature detecting prior. Since we should not smooth across a sharp feature, we use edge labels to control the vertex process. In a Bayesian framework, MRF priors are combined with the likelihood function related to the mesh formation method. The output of our algorithm...

  8. SURFACE MESH PARAMETERIZATION WITH NATURAL BOUNDARY

    Institute of Scientific and Technical Information of China (English)

    Ye Ming; Zhu Xiaofeng; Wang Chengtao

    2003-01-01

    Using the projected curve of surface mesh boundary as parameter domain border, linear mapping parameterization with natural boundary is realized. A fast algorithm for least squares fitting plane of vertices in the mesh boundary is proposed. After the mesh boundary is projected onto the fitting plane, low-pass filtering is adopted to eliminate crossovers, sharp corners and cavities in the projected curve and convert it into an eligible convex parameter domain boundary. In order to facilitate quantitative evaluations of parameterization schemes, three distortion-measuring formulae are presented.

  9. Application of mesh network radios to UGS

    Science.gov (United States)

    Calcutt, Wade; Jones, Barry; Roeder, Brent

    2008-04-01

    During the past five years McQ has been actively pursuing integrating and applying wireless mesh network radios as a communications solution for unattended ground sensor (UGS) systems. This effort has been rewarded with limited levels of success and has ultimately resulted in a corporate position regarding the use of mesh network radios for UGS systems. A discussion into the background of the effort, the challenges of implementing commercial off-the-shelf (COTS) mesh radios with UGSs, the tradeoffs involved, and an overview of the future direction is presented.

  10. Numerical simulation of H2/air detonation using unstructured mesh

    Science.gov (United States)

    Togashi, Fumiya; Löhner, Rainald; Tsuboi, Nobuyuki

    2009-06-01

    To explore the capability of unstructured mesh to simulate detonation wave propagation phenomena, numerical simulation of H2/air detonation using unstructured mesh was conducted. The unstructured mesh has several adv- antages such as easy mesh adaptation and flexibility to the complicated configurations. To examine the resolution dependency of the unstructured mesh, several simulations varying the mesh size were conducted and compared with a computed result using a structured mesh. The results show that the unstructured mesh solution captures the detailed structure of detonation wave, as well as the structured mesh solution. To capture the detailed detonation cell structure, the unstructured mesh simulations required at least twice, ideally 5times the resolution of structured mesh solution.

  11. Speaking Fluently And Accurately

    Institute of Scientific and Technical Information of China (English)

    JosephDeVeto

    2004-01-01

    Even after many years of study,students make frequent mistakes in English. In addition, many students still need a long time to think of what they want to say. For some reason, in spite of all the studying, students are still not quite fluent.When I teach, I use one technique that helps students not only speak more accurately, but also more fluently. That technique is dictations.

  12. Accurate Finite Difference Algorithms

    Science.gov (United States)

    Goodrich, John W.

    1996-01-01

    Two families of finite difference algorithms for computational aeroacoustics are presented and compared. All of the algorithms are single step explicit methods, they have the same order of accuracy in both space and time, with examples up to eleventh order, and they have multidimensional extensions. One of the algorithm families has spectral like high resolution. Propagation with high order and high resolution algorithms can produce accurate results after O(10(exp 6)) periods of propagation with eight grid points per wavelength.

  13. Method of accurate grinding for single enveloping TI worm

    Institute of Scientific and Technical Information of China (English)

    SUN Yuehai; ZHENG Huijiang; BI Qingzhen; WANG Shuren

    2005-01-01

    TI worm drive consists of involute helical gear and its enveloping Hourglass worm. Accurate grinding for TI worm is the key manufacture technology for TI worm gearing being popularized and applied. According to the theory of gear mesh, the equations of tooth surface of worm drive are gained, and the equation of the axial section profile of grinding wheel that can accurately grind TI worm is extracted. Simultaneously,the relation of position and motion between TI worm and grinding wheel are expounded.The method for precisely grinding single enveloping TI worm is obtained.

  14. Parallelization of Unsteady Adaptive Mesh Refinement for Unstructured Navier-Stokes Solvers

    Science.gov (United States)

    Schwing, Alan M.; Nompelis, Ioannis; Candler, Graham V.

    2014-01-01

    This paper explores the implementation of the MPI parallelization in a Navier-Stokes solver using adaptive mesh re nement. Viscous and inviscid test problems are considered for the purpose of benchmarking, as are implicit and explicit time advancement methods. The main test problem for comparison includes e ects from boundary layers and other viscous features and requires a large number of grid points for accurate computation. Ex- perimental validation against double cone experiments in hypersonic ow are shown. The adaptive mesh re nement shows promise for a staple test problem in the hypersonic com- munity. Extension to more advanced techniques for more complicated ows is described.

  15. LR: Compact connectivity representation for triangle meshes

    Energy Technology Data Exchange (ETDEWEB)

    Gurung, T; Luffel, M; Lindstrom, P; Rossignac, J

    2011-01-28

    We propose LR (Laced Ring) - a simple data structure for representing the connectivity of manifold triangle meshes. LR provides the option to store on average either 1.08 references per triangle or 26.2 bits per triangle. Its construction, from an input mesh that supports constant-time adjacency queries, has linear space and time complexity, and involves ordering most vertices along a nearly-Hamiltonian cycle. LR is best suited for applications that process meshes with fixed connectivity, as any changes to the connectivity require the data structure to be rebuilt. We provide an implementation of the set of standard random-access, constant-time operators for traversing a mesh, and show that LR often saves both space and traversal time over competing representations.

  16. Assignment of fields from particles to mesh

    CERN Document Server

    Duque, Daniel

    2016-01-01

    In Computational Fluid Dynamics there have been many attempts to combine the power of a fixed mesh on which to carry out spatial calculations with that of a set of particles that moves following the velocity field. These ideas indeed go back to Particle-in-Cell methods, proposed about 60 years ago. Of course, some procedure is needed to transfer field information between particles and mesh. There are many possible choices for this "assignment", or "projection". Several requirements may guide this choice. Two well-known ones are conservativity and stability, which apply to volume integrals of the fields. An additional one is here considered: preservation of information. This means that mesh interpolation, followed by mesh assignment, should leave the field values invariant. The resulting methods are termed "mass" assignments due to their strong similarities with the Finite Element Method. We test several procedures, including the well-known FLIP, on three scenarios: simple 1D convection, 2D convection of Zales...

  17. Shape space exploration of constrained meshes

    KAUST Repository

    Yang, Yongliang

    2011-01-01

    We present a general computational framework to locally characterize any shape space of meshes implicitly prescribed by a collection of non-linear constraints. We computationally access such manifolds, typically of high dimension and co-dimension, through first and second order approximants, namely tangent spaces and quadratically parameterized osculant surfaces. Exploration and navigation of desirable subspaces of the shape space with regard to application specific quality measures are enabled using approximants that are intrinsic to the underlying manifold and directly computable in the parameter space of the osculant surface. We demonstrate our framework on shape spaces of planar quad (PQ) meshes, where each mesh face is constrained to be (nearly) planar, and circular meshes, where each face has a circumcircle. We evaluate our framework for navigation and design exploration on a variety of inputs, while keeping context specific properties such as fairness, proximity to a reference surface, etc.

  18. Obtuse triangle suppression in anisotropic meshes

    KAUST Repository

    Sun, Feng

    2011-12-01

    Anisotropic triangle meshes are used for efficient approximation of surfaces and flow data in finite element analysis, and in these applications it is desirable to have as few obtuse triangles as possible to reduce the discretization error. We present a variational approach to suppressing obtuse triangles in anisotropic meshes. Specifically, we introduce a hexagonal Minkowski metric, which is sensitive to triangle orientation, to give a new formulation of the centroidal Voronoi tessellation (CVT) method. Furthermore, we prove several relevant properties of the CVT method with the newly introduced metric. Experiments show that our algorithm produces anisotropic meshes with much fewer obtuse triangles than using existing methods while maintaining mesh anisotropy. © 2011 Elsevier B.V. All rights reserved.

  19. Mesh Processing in Medical Image Analysis

    DEFF Research Database (Denmark)

    The following topics are dealt with: mesh processing; medical image analysis; interactive freeform modeling; statistical shape analysis; clinical CT images; statistical surface recovery; automated segmentation; cerebral aneurysms; and real-time particle-based representation....

  20. Metal Mesh Filters for Terahertz Receivers Project

    Data.gov (United States)

    National Aeronautics and Space Administration — The technical objective of this SBIR program is to develop and demonstrate metal mesh filters for use in NASA's low noise receivers for terahertz astronomy and...

  1. Adaptive sampling for mesh spectrum editing

    Institute of Scientific and Technical Information of China (English)

    ZHAO Xiang-jun; ZHANG Hong-xin; BAO Hu-jun

    2006-01-01

    A mesh editing framework is presented in this paper, which integrates Free-Form Deformation (FFD) and geometry signal processing. By using simplified model from original mesh, the editing task can be accomplished with a few operations. We take the deformation of the proxy and the position coordinates of the mesh models as geometry signal. Wavelet analysis is employed to separate local detail information gracefully. The crucial innovation of this paper is a new adaptive regular sampling approach for our signal analysis based editing framework. In our approach, an original mesh is resampled and then refined iteratively which reflects optimization of our proposed spectrum preserving energy. As an extension of our spectrum editing scheme,the editing principle is applied to geometry details transferring, which brings satisfying results.

  2. Shape space exploration of constrained meshes

    KAUST Repository

    Yang, Yongliang

    2011-12-12

    We present a general computational framework to locally characterize any shape space of meshes implicitly prescribed by a collection of non-linear constraints. We computationally access such manifolds, typically of high dimension and co-dimension, through first and second order approximants, namely tangent spaces and quadratically parameterized osculant surfaces. Exploration and navigation of desirable subspaces of the shape space with regard to application specific quality measures are enabled using approximants that are intrinsic to the underlying manifold and directly computable in the parameter space of the osculant surface. We demonstrate our framework on shape spaces of planar quad (PQ) meshes, where each mesh face is constrained to be (nearly) planar, and circular meshes, where each face has a circumcircle. We evaluate our framework for navigation and design exploration on a variety of inputs, while keeping context specific properties such as fairness, proximity to a reference surface, etc. © 2011 ACM.

  3. Removal of line artifacts on mesh boundary in computer generated hologram by mesh phase matching.

    Science.gov (United States)

    Park, Jae-Hyeung; Yeom, Han-Ju; Kim, Hee-Jae; Zhang, HuiJun; Li, BoNi; Ji, Yeong-Min; Kim, Sang-Hoo

    2015-03-23

    Mesh-based computer generated hologram enables realistic and efficient representation of three-dimensional scene. However, the dark line artifacts on the boundary between neighboring meshes are frequently observed, degrading the quality of the reconstruction. In this paper, we propose a simple technique to remove the dark line artifacts by matching the phase on the boundary of neighboring meshes. The feasibility of the proposed method is confirmed by the numerical and optical reconstruction of the generated hologram.

  4. Mesh Processing in Medical Image Analysis

    DEFF Research Database (Denmark)

    The following topics are dealt with: mesh processing; medical image analysis; interactive freeform modeling; statistical shape analysis; clinical CT images; statistical surface recovery; automated segmentation; cerebral aneurysms; and real-time particle-based representation.......The following topics are dealt with: mesh processing; medical image analysis; interactive freeform modeling; statistical shape analysis; clinical CT images; statistical surface recovery; automated segmentation; cerebral aneurysms; and real-time particle-based representation....

  5. Vector field processing on triangle meshes

    OpenAIRE

    De Goes, Fernando; Desbrun, Mathieu; Tong, Yiying

    2015-01-01

    While scalar fields on surfaces have been staples of geometry processing, the use of tangent vector fields has steadily grown in geometry processing over the last two decades: they are crucial to encoding directions and sizing on surfaces as commonly required in tasks such as texture synthesis, non-photorealistic rendering, digital grooming, and meshing. There are, however, a variety of discrete representations of tangent vector fields on triangle meshes, and each approach offers different tr...

  6. Unstructured Mesh Movement and Viscous Mesh Generation for CFD-Based Design Optimization Project

    Data.gov (United States)

    National Aeronautics and Space Administration — The innovations proposed are twofold: 1) a robust unstructured mesh movement method able to handle isotropic (Euler), anisotropic (viscous), mixed element (hybrid)...

  7. Mesh geometry impact on Micromegas performance with an Exchangeable Mesh prototype

    Science.gov (United States)

    Kuger, F.; Bianco, M.; Iengo, P.; Sekhniaidze, G.; Veenhof, R.; Wotschack, J.

    2016-07-01

    The reconstruction precision of gaseous detectors is limited by losses of primary electrons during signal formation. In addition to common gas related losses, like attachment, Micromegas suffer from electron absorption during its transition through the micro mesh. This study aims for a deepened understanding of electron losses and their dependency on the mesh geometry. It combines experimental results obtained with a novel designed Exchangeable Mesh Micromegas (ExMe) and advanced microscopic-tracking simulations (ANSYS and Garfield++) of electron drift and mesh transition.

  8. TVD differencing on three-dimensional unstructured meshes with monotonicity-preserving correction of mesh skewness

    Science.gov (United States)

    Denner, Fabian; van Wachem, Berend G. M.

    2015-10-01

    Total variation diminishing (TVD) schemes are a widely applied group of monotonicity-preserving advection differencing schemes for partial differential equations in numerical heat transfer and computational fluid dynamics. These schemes are typically designed for one-dimensional problems or multidimensional problems on structured equidistant quadrilateral meshes. Practical applications, however, often involve complex geometries that cannot be represented by Cartesian meshes and, therefore, necessitate the application of unstructured meshes, which require a more sophisticated discretisation to account for their additional topological complexity. In principle, TVD schemes are applicable to unstructured meshes, however, not all the data required for TVD differencing is readily available on unstructured meshes, and the solution suffers from considerable numerical diffusion as a result of mesh skewness. In this article we analyse TVD differencing on unstructured three-dimensional meshes, focusing on the non-linearity of TVD differencing and the extrapolation of the virtual upwind node. Furthermore, we propose a novel monotonicity-preserving correction method for TVD schemes that significantly reduces numerical diffusion caused by mesh skewness. The presented numerical experiments demonstrate the importance of accounting for the non-linearity introduced by TVD differencing and of imposing carefully chosen limits on the extrapolated virtual upwind node, as well as the efficacy of the proposed method to correct mesh skewness.

  9. How to model wireless mesh networks topology

    International Nuclear Information System (INIS)

    The specification of network connectivity model or topology is the beginning of design and analysis in Computer Network researches. Wireless Mesh Networks is an autonomic network that is dynamically self-organised, self-configured while the mesh nodes establish automatic connectivity with the adjacent nodes in the relay network of wireless backbone routers. Researches in Wireless Mesh Networks range from node deployment to internetworking issues with sensor, Internet and cellular networks. These researches require modelling of relationships and interactions among nodes including technical characteristics of the links while satisfying the architectural requirements of the physical network. However, the existing topology generators model geographic topologies which constitute different architectures, thus may not be suitable in Wireless Mesh Networks scenarios. The existing methods of topology generation are explored, analysed and parameters for their characterisation are identified. Furthermore, an algorithm for the design of Wireless Mesh Networks topology based on square grid model is proposed in this paper. The performance of the topology generated is also evaluated. This research is particularly important in the generation of a close-to-real topology for ensuring relevance of design to the intended network and validity of results obtained in Wireless Mesh Networks researches

  10. MHD simulations on an unstructured mesh

    International Nuclear Information System (INIS)

    We describe work on a full MHD code using an unstructured mesh. MH3D++ is an extension of the PPPL MH3D resistive full MHD code. MH3D++ replaces the structured mesh and finite difference / fourier discretization of MH3D with an unstructured mesh and finite element / fourier discretization. Low level routines which perform differential operations, solution of PDEs such as Poisson's equation, and graphics, are encapsulated in C++ objects to isolate the finite element operations from the higher level code. The high level code is the same, whether it is run in structured or unstructured mesh versions. This allows the unstructured mesh version to be benchmarked against the structured mesh version. As a preliminary example, disruptions in DIIID reverse shear equilibria are studied numerically with the MH3D++ code. Numerical equilibria were first produced starting with an EQDSK file containing equilibrium data of a DIII-D L-mode negative central shear discharge. Using these equilibria, the linearized equations are time advanced to get the toroidal mode number n = 1 linear growth rate and eigenmode, which is resistively unstable. The equilibrium and linear mode are used to initialize 3D nonlinear runs. An example shows poloidal slices of 3D pressure surfaces: initially, on the left, and at an intermediate time, on the right

  11. Discrete differential geometry: the nonplanar quadrilateral mesh.

    Science.gov (United States)

    Twining, Carole J; Marsland, Stephen

    2012-06-01

    We consider the problem of constructing a discrete differential geometry defined on nonplanar quadrilateral meshes. Physical models on discrete nonflat spaces are of inherent interest, as well as being used in applications such as computation for electromagnetism, fluid mechanics, and image analysis. However, the majority of analysis has focused on triangulated meshes. We consider two approaches: discretizing the tensor calculus, and a discrete mesh version of differential forms. While these two approaches are equivalent in the continuum, we show that this is not true in the discrete case. Nevertheless, we show that it is possible to construct mesh versions of the Levi-Civita connection (and hence the tensorial covariant derivative and the associated covariant exterior derivative), the torsion, and the curvature. We show how discrete analogs of the usual vector integral theorems are constructed in such a way that the appropriate conservation laws hold exactly on the mesh, rather than only as approximations to the continuum limit. We demonstrate the success of our method by constructing a mesh version of classical electromagnetism and discuss how our formalism could be used to deal with other physical models, such as fluids.

  12. Hybrid Surface Mesh Adaptation for Climate Modeling

    Institute of Scientific and Technical Information of China (English)

    Ahmed Khamayseh; Valmor de Almeida; Glen Hansen

    2008-01-01

    Solution-driven mesh adaptation is becoming quite popular for spatial error control in the numerical simulation of complex computational physics applications, such as climate modeling. Typically, spatial adaptation is achieved by element subdivision (h adaptation) with a primary goal of resolving the local length scales of interest. A second, lesspopular method of spatial adaptivity is called "mesh motion" (r adaptation); the smooth repositioning of mesh node points aimed at resizing existing elements to capture the local length scales. This paper proposes an adaptation method based on a combination of both element subdivision and node point repositioning (rh adaptation). By combining these two methods using the notion of a mobility function, the proposed approach seeks to increase the flexibility and extensibility of mesh motion algorithms while providing a somewhat smoother transition between refined regions than is pro-duced by element subdivision alone. Further, in an attempt to support the requirements of a very general class of climate simulation applications, the proposed method is de-signed to accommodate unstructured, polygonal mesh topologies in addition to the most popular mesh types.

  13. Discrete differential geometry: The nonplanar quadrilateral mesh

    Science.gov (United States)

    Twining, Carole J.; Marsland, Stephen

    2012-06-01

    We consider the problem of constructing a discrete differential geometry defined on nonplanar quadrilateral meshes. Physical models on discrete nonflat spaces are of inherent interest, as well as being used in applications such as computation for electromagnetism, fluid mechanics, and image analysis. However, the majority of analysis has focused on triangulated meshes. We consider two approaches: discretizing the tensor calculus, and a discrete mesh version of differential forms. While these two approaches are equivalent in the continuum, we show that this is not true in the discrete case. Nevertheless, we show that it is possible to construct mesh versions of the Levi-Civita connection (and hence the tensorial covariant derivative and the associated covariant exterior derivative), the torsion, and the curvature. We show how discrete analogs of the usual vector integral theorems are constructed in such a way that the appropriate conservation laws hold exactly on the mesh, rather than only as approximations to the continuum limit. We demonstrate the success of our method by constructing a mesh version of classical electromagnetism and discuss how our formalism could be used to deal with other physical models, such as fluids.

  14. Sensitivity of predicted muscle forces during gait to anatomical variability in musculotendon geometry.

    Science.gov (United States)

    Bosmans, Lode; Valente, Giordano; Wesseling, Mariska; Van Campen, Anke; De Groote, Friedl; De Schutter, Joris; Jonkers, Ilse

    2015-07-16

    Scaled generic musculoskeletal models are commonly used to drive dynamic simulations of motions. It is however, acknowledged that not accounting for variability in musculoskeletal geometry and musculotendon parameters may confound the simulation results, even when analysing control subjects. This study documents the three-dimensional anatomical variability of musculotendon origins and insertions of 33 lower limb muscles determined based on magnetic resonance imaging in six subjects. This anatomical variability was compared to the musculotendon point location in a generic musculoskeletal model. Furthermore, the sensitivity of muscle forces during gait, calculated using static optimization, to perturbations of the musculotendon point location was analyzed with a generic model. More specific, a probabilistic approach was used: for each analyzed musculotendon point, the three-dimensional location was re-sampled with a uniform Latin hypercube method within the anatomical variability and the static optimization problem was then re-solved for all perturbations. We found that musculotendon point locations in the generic model showed only variable correspondences with the anatomical variability. The anatomical variability of musculotendon point location did affect the calculated muscle forces: muscles most sensitive to perturbations within the anatomical variability are iliacus and psoas. Perturbation of the gluteus medius anterior, iliacus and psoas induces the largest concomitant changes in muscle forces of the unperturbed muscles. Therefore, when creating subject-specific musculoskeletal models, these attachment points should be defined accurately. In addition, the size of the anatomical variability of the musculotendon point location was not related to the sensitivity of the calculated muscle forces. PMID:25979383

  15. Fire performance of basalt FRP mesh reinforced HPC thin plates

    DEFF Research Database (Denmark)

    Hulin, Thomas; Hodicky, Kamil; Schmidt, Jacob Wittrup;

    2013-01-01

    An experimental program was carried out to investigate the influence of basalt FRP (BFRP) reinforcing mesh on the fire behaviour of thin high performance concrete (HPC) plates applied to sandwich elements. Samples with BFRP mesh were compared to samples with no mesh, samples with steel mesh...

  16. Brain Morphometry Using Anatomical Magnetic Resonance Imaging

    Science.gov (United States)

    Bansal, Ravi; Gerber, Andrew J.; Peterson, Bradley S.

    2008-01-01

    The efficacy of anatomical magnetic resonance imaging (MRI) in studying the morphological features of various regions of the brain is described, also providing the steps used in the processing and studying of the images. The ability to correlate these features with several clinical and psychological measures can help in using anatomical MRI to…

  17. Are the Genitalia of Anatomical Dolls Distorted?

    Science.gov (United States)

    Bays, Jan

    1990-01-01

    To determine whether the genitalia of anatomical dolls are disproportionately large and may suggest sexual activity to children who have not been abused, the genitalia and breasts of 17 sets of anatomical dolls were measured. When the measurements were extrapolated to adult human proportions, the sizes were not found to be exaggerated. (Author/JDD)

  18. Recommendation for maximum allowable mesh size for plant combustion analyses with CFD codes

    International Nuclear Information System (INIS)

    Highlights: ► Used mesh size has to be small enough to resolve all pressure waves relevant for the structural response analyses. ► Maximum allowable mesh size for a combustion pressure load calculation decreases with increasing relevant natural frequency of the structure. ► Maximum allowable mesh size for a combustion pressure load calculation increases with increasing of the speed of the sound in the gas mixture. ► Maximum allowable mesh size can be calculated from the developed analytical formula. - Abstract: The selection of the maximum allowable mesh size for a fluid dynamic calculation with Computational Fluid Dynamic (CFD) codes is essential for the reliability of the results assuming suitable physical and numerical models are used. Calculations with CFD codes are necessary for the assessment of the consequences of pressure loads on containment structures due to possible hydrogen combustion in nuclear power plants in a severe accident and on piping system due to pressure wave propagation in case of a pipe break accident or fast closing of a valve in a pipe with forced flow. CFD simulations of the transport and distribution of the released hydrogen/steam as well as the possible combustion during the transient in the containment require an appropriate mesh size to resolve the relevant phenomena and loads. The determination of the mesh size has to take into account: •adequate delineation of the containment geometry for accurate hydrogen distribution calculations, •sufficient conservative resolution of the combustion phenomena for the determination of pressure wave propagation and pressure loads, •no loss of pressure wave loads with relevant frequencies for the structural response analysis of the containment during the combustion calculation. In this paper, it is found that the accuracy of the calculated pressure wave associated with its frequency depends on the mesh size and a simple and easily useable analytical formula for the determination of

  19. Recommendation for maximum allowable mesh size for plant combustion analyses with CFD codes

    Energy Technology Data Exchange (ETDEWEB)

    Movahed-Shariat-Panahi, M.A., E-mail: Mohammad-Ali.Movahed@areva.com [AREVA GmbH Offenbach (Germany)

    2012-12-15

    Highlights: Black-Right-Pointing-Pointer Used mesh size has to be small enough to resolve all pressure waves relevant for the structural response analyses. Black-Right-Pointing-Pointer Maximum allowable mesh size for a combustion pressure load calculation decreases with increasing relevant natural frequency of the structure. Black-Right-Pointing-Pointer Maximum allowable mesh size for a combustion pressure load calculation increases with increasing of the speed of the sound in the gas mixture. Black-Right-Pointing-Pointer Maximum allowable mesh size can be calculated from the developed analytical formula. - Abstract: The selection of the maximum allowable mesh size for a fluid dynamic calculation with Computational Fluid Dynamic (CFD) codes is essential for the reliability of the results assuming suitable physical and numerical models are used. Calculations with CFD codes are necessary for the assessment of the consequences of pressure loads on containment structures due to possible hydrogen combustion in nuclear power plants in a severe accident and on piping system due to pressure wave propagation in case of a pipe break accident or fast closing of a valve in a pipe with forced flow. CFD simulations of the transport and distribution of the released hydrogen/steam as well as the possible combustion during the transient in the containment require an appropriate mesh size to resolve the relevant phenomena and loads. The determination of the mesh size has to take into account: Bullet adequate delineation of the containment geometry for accurate hydrogen distribution calculations, Bullet sufficient conservative resolution of the combustion phenomena for the determination of pressure wave propagation and pressure loads, Bullet no loss of pressure wave loads with relevant frequencies for the structural response analysis of the containment during the combustion calculation. In this paper, it is found that the accuracy of the calculated pressure wave associated with its

  20. Relativistic Vlasov-Maxwell modelling using finite volumes and adaptive mesh refinement

    CERN Document Server

    Wettervik, Benjamin Svedung; Siminos, Evangelos; Fülöp, Tünde

    2016-01-01

    The dynamics of collisionless plasmas can be modelled by the Vlasov-Maxwell system of equations. An Eulerian approach is needed to accurately describe processes that are governed by high energy tails in the distribution function, but is of limited efficiency for high dimensional problems. The use of an adaptive mesh can reduce the scaling of the computational cost with the dimension of the problem. Here, we present a relativistic Eulerian Vlasov-Maxwell solver with block-structured adaptive mesh refinement in one spatial and one momentum dimension. The discretization of the Vlasov equation is based on a high-order finite volume method. A flux corrected transport algorithm is applied to limit spurious oscillations and ensure the physical character of the distribution function. We demonstrate a speed-up by a factor of five, because of the use of an adaptive mesh, in a typical scenario involving laser-plasma interaction in the self-induced transparency regime.

  1. How accurate is image-free computer navigation for hip resurfacing arthroplasty? An anatomical investigation

    International Nuclear Information System (INIS)

    The existing studies concerning image-free navigated implantation of hip resurfacing arthroplasty are based on analysis of the accuracy of conventional biplane radiography. Studies have shown that these measurements in biplane radiography are imprecise and that precision is improved by use of three-dimensional (3D) computer tomography (CT) scans. To date, the accuracy of image-free navigation devices for hip resurfacing has not been investigated using CT scans, and anteversion accuracy has not been assessed at all. Furthermore, no study has tested the reliability of the navigation software concerning the automatically calculated implant position. The purpose of our study was to analyze the accuracy of varus-valgus and anteversion using an image-free hip resurfacing navigation device. The reliability of the software-calculated implant position was also determined. A total of 32 femoral hip resurfacing components were implanted on embalmed human femurs using an image-free navigation device. In all, 16 prostheses were implanted with the proposed position generated by the navigation software; the 16 prostheses were inserted in an optimized valgus position. A 3D CT scan was undertaken before and after operation. The difference between the measured and planned varus-valgus angle averaged 1 deg (mean±standard deviation (SD): group I, 1 deg±2 deg; group II, 1 deg±1 deg). The mean±SD difference between femoral neck anteversion and anteversion of the implant was 4 deg (group I, 4 deg±4 deg; group II, 4 deg±3 deg). The software-calculated implant position differed 7 deg±8 deg from the measured neck-shaft angle. These measured accuracies did not differ significantly between the two groups. Our study proved the high accuracy of the navigation device concerning the most important biomechanical factor: the varus-valgus angle. The software calculation of the proposed implant position has been shown to be inaccurate and needs improvement. Hence, manual adjustment of the implant position in the software-planning step is frequently required. (author)

  2. Atlas-Based Automatic Generation of Subject-Specific Finite Element Tongue Meshes.

    Science.gov (United States)

    Bijar, Ahmad; Rohan, Pierre-Yves; Perrier, Pascal; Payan, Yohan

    2016-01-01

    Generation of subject-specific 3D finite element (FE) models requires the processing of numerous medical images in order to precisely extract geometrical information about subject-specific anatomy. This processing remains extremely challenging. To overcome this difficulty, we present an automatic atlas-based method that generates subject-specific FE meshes via a 3D registration guided by Magnetic Resonance images. The method extracts a 3D transformation by registering the atlas' volume image to the subject's one, and establishes a one-to-one correspondence between the two volumes. The 3D transformation field deforms the atlas' mesh to generate the subject-specific FE mesh. To preserve the quality of the subject-specific mesh, a diffeomorphic non-rigid registration based on B-spline free-form deformations is used, which guarantees a non-folding and one-to-one transformation. Two evaluations of the method are provided. First, a publicly available CT-database is used to assess the capability to accurately capture the complexity of each subject-specific Lung's geometry. Second, FE tongue meshes are generated for two healthy volunteers and two patients suffering from tongue cancer using MR images. It is shown that the method generates an appropriate representation of the subject-specific geometry while preserving the quality of the FE meshes for subsequent FE analysis. To demonstrate the importance of our method in a clinical context, a subject-specific mesh is used to simulate tongue's biomechanical response to the activation of an important tongue muscle, before and after cancer surgery. PMID:26577253

  3. Atlas-Based Automatic Generation of Subject-Specific Finite Element Tongue Meshes.

    Science.gov (United States)

    Bijar, Ahmad; Rohan, Pierre-Yves; Perrier, Pascal; Payan, Yohan

    2016-01-01

    Generation of subject-specific 3D finite element (FE) models requires the processing of numerous medical images in order to precisely extract geometrical information about subject-specific anatomy. This processing remains extremely challenging. To overcome this difficulty, we present an automatic atlas-based method that generates subject-specific FE meshes via a 3D registration guided by Magnetic Resonance images. The method extracts a 3D transformation by registering the atlas' volume image to the subject's one, and establishes a one-to-one correspondence between the two volumes. The 3D transformation field deforms the atlas' mesh to generate the subject-specific FE mesh. To preserve the quality of the subject-specific mesh, a diffeomorphic non-rigid registration based on B-spline free-form deformations is used, which guarantees a non-folding and one-to-one transformation. Two evaluations of the method are provided. First, a publicly available CT-database is used to assess the capability to accurately capture the complexity of each subject-specific Lung's geometry. Second, FE tongue meshes are generated for two healthy volunteers and two patients suffering from tongue cancer using MR images. It is shown that the method generates an appropriate representation of the subject-specific geometry while preserving the quality of the FE meshes for subsequent FE analysis. To demonstrate the importance of our method in a clinical context, a subject-specific mesh is used to simulate tongue's biomechanical response to the activation of an important tongue muscle, before and after cancer surgery.

  4. Randomized clinical trial of self-gripping mesh versus sutured mesh for Lichtenstein hernia repair

    DEFF Research Database (Denmark)

    Jorgensen, L N; Sommer, T; Assaadzadeh, S;

    2012-01-01

    BACKGROUND: Many patients develop discomfort after open repair of a groin hernia. It was hypothesized that suture fixation of the mesh is a cause of these symptoms. METHODS: This patient- and assessor-blinded randomized multicentre clinical trial compared a self-gripping mesh (Parietene Progrip...

  5. Verification of Unstructured Mesh Capabilities in MCNP6 for Reactor Physics Problems

    Energy Technology Data Exchange (ETDEWEB)

    Burke, Timothy P. [Los Alamos National Laboratory; Martz, Roger L. [Los Alamos National Laboratory; Kiedrowski, Brian C. [Los Alamos National Laboratory; Martin, William R. [Los Alamos National Laboratory

    2012-08-22

    New unstructured mesh capabilities in MCNP6 (developmental version during summer 2012) show potential for conducting multi-physics analyses by coupling MCNP to a finite element solver such as Abaqus/CAE[2]. Before these new capabilities can be utilized, the ability of MCNP to accurately estimate eigenvalues and pin powers using an unstructured mesh must first be verified. Previous work to verify the unstructured mesh capabilities in MCNP was accomplished using the Godiva sphere [1], and this work attempts to build on that. To accomplish this, a criticality benchmark and a fuel assembly benchmark were used for calculations in MCNP using both the Constructive Solid Geometry (CSG) native to MCNP and the unstructured mesh geometry generated using Abaqus/CAE. The Big Ten criticality benchmark [3] was modeled due to its geometry being similar to that of a reactor fuel pin. The C5G7 3-D Mixed Oxide (MOX) Fuel Assembly Benchmark [4] was modeled to test the unstructured mesh capabilities on a reactor-type problem.

  6. Applicability of three dimensional diffusion theory programmes based on coarse mesh methods to calculating nuclear characteristics of fast breeder reactors

    International Nuclear Information System (INIS)

    Hexagonal coarse mesh methods in three dimensional diffusion theory programme have been examined for calculating in detail nuclear characteristics of fast breeder reactors composed of hexagonal fuel assemblies, comparing with more accurate triangular fine mesh method. The fast breeder reactors considered here are LMFBRs with different core configurations including heterogeneous core and GCFRs in different burnup states. The nuclear characteristics investigated in the comparative study are effective multiplication factor, power and neutron flux distributions, breeding ratio, reactivity effects and control rod reactivity worth. The comparative study indicates that the conventional coarse mesh method is not adeguate to detailed evaluation on nuclear characteristics of fast breeder reactors, and that the improved coarse mesh method developed by T. Takeda et al. is very useful for this purpose, though some problems exists in evaluation of power distribution and breeding ratio of the extremely composite fast breeder reactors, such as the radially heterogeneous core LMFBR. (author)

  7. Conservative interpolation between general spherical meshes

    Directory of Open Access Journals (Sweden)

    E. Kritsikis

    2015-06-01

    Full Text Available An efficient, local, explicit, second-order, conservative interpolation algorithm between spherical meshes is presented. The cells composing the source and target meshes may be either spherical polygons or longitude–latitude quadrilaterals. Second-order accuracy is obtained by piecewise-linear finite volume reconstruction over the source mesh. Global conservation is achieved through the introduction of a supermesh, whose cells are all possible intersections of source and target cells. Areas and intersections are computed exactly to yield a geometrically exact method. The main efficiency bottleneck caused by the construction of the supermesh is overcome by adopting tree-based data structures and algorithms, from which the mesh connectivity can also be deduced efficiently. The theoretical second-order accuracy is verified using a smooth test function and pairs of meshes commonly used for atmospheric modelling. Experiments confirm that the most expensive operations, especially the supermesh construction, have O(NlogN computational cost. The method presented is meant to be incorporated in pre- or post-processing atmospheric modelling pipelines, or directly into models for flexible input/output. It could also serve as a basis for conservative coupling between model components, e.g. atmosphere and ocean.

  8. Treatment of anterior vaginal wall prolapse with and without polypropylene mesh: a prospective, randomized and controlled trial - Part I

    Directory of Open Access Journals (Sweden)

    Jose Tadeu Nunes Tamanini

    2013-07-01

    Full Text Available Objective To compare the use of polypropylene mesh (PM and the traditional anterior vaginal wall colporraphy in women with anterior vaginal wall prolapse (AVWP using objective and subjective tests and evaluation of quality of life (QoL. Materials and Methods One hundred women were randomly distributed in two preoperatory groups. The first group (mesh (n = 45 received a PM implant and the control group (n = 55 was submitted to traditional colporraphy. Postoperatory follow-up was done after 12 months. The primary objective was the correction of the Ba point ≤ -2 POP-Q (Pelvic Organ Prolapse Quantification System and the secondary objective was the improvement of vaginal symptoms and QoL through ICIQ-VS (International Consultation on Incontinence Questionnaire - Vaginal Symptoms. Complications related to the use of PM or not were also described. Results There was a significant difference between all POP-Q measures of pre- and postoperatory periods of each group in particular. There was a significant difference of the Ba point of the postoperatory period between the Mesh and Control group. The mean of Ba point in the Mesh group was statistically lower than of the Control group, depicting the better anatomical result of the first group. Both techniques improved vaginal symptoms and QoL. The most frequent complication of the Mesh group was prepubic hematoma in the perioperative period. In 9.3% of the cases treated with mesh it was observed PM exposition at the anterior vaginal wall after 12 months, being most of them treated clinically. Conclusion The treatment of AVWP significantly improved the Ba point in the Mesh group in comparison to the Control group. There were no differences of the vaginal symptoms and QoL between the two groups after 12 months. There were few and low grade complications on both groups.

  9. Automatic Tooth Segmentation of Dental Mesh Based on Harmonic Fields

    Directory of Open Access Journals (Sweden)

    Sheng-hui Liao

    2015-01-01

    Full Text Available An important preprocess in computer-aided orthodontics is to segment teeth from the dental models accurately, which should involve manual interactions as few as possible. But fully automatic partition of all teeth is not a trivial task, since teeth occur in different shapes and their arrangements vary substantially from one individual to another. The difficulty is exacerbated when severe teeth malocclusion and crowding problems occur, which is a common occurrence in clinical cases. Most published methods in this area either are inaccurate or require lots of manual interactions. Motivated by the state-of-the-art general mesh segmentation methods that adopted the theory of harmonic field to detect partition boundaries, this paper proposes a novel, dental-targeted segmentation framework for dental meshes. With a specially designed weighting scheme and a strategy of a priori knowledge to guide the assignment of harmonic constraints, this method can identify teeth partition boundaries effectively. Extensive experiments and quantitative analysis demonstrate that the proposed method is able to partition high-quality teeth automatically with robustness and efficiency.

  10. Automatic Tooth Segmentation of Dental Mesh Based on Harmonic Fields.

    Science.gov (United States)

    Liao, Sheng-hui; Liu, Shi-jian; Zou, Bei-ji; Ding, Xi; Liang, Ye; Huang, Jun-hui

    2015-01-01

    An important preprocess in computer-aided orthodontics is to segment teeth from the dental models accurately, which should involve manual interactions as few as possible. But fully automatic partition of all teeth is not a trivial task, since teeth occur in different shapes and their arrangements vary substantially from one individual to another. The difficulty is exacerbated when severe teeth malocclusion and crowding problems occur, which is a common occurrence in clinical cases. Most published methods in this area either are inaccurate or require lots of manual interactions. Motivated by the state-of-the-art general mesh segmentation methods that adopted the theory of harmonic field to detect partition boundaries, this paper proposes a novel, dental-targeted segmentation framework for dental meshes. With a specially designed weighting scheme and a strategy of a priori knowledge to guide the assignment of harmonic constraints, this method can identify teeth partition boundaries effectively. Extensive experiments and quantitative analysis demonstrate that the proposed method is able to partition high-quality teeth automatically with robustness and efficiency. PMID:26413507

  11. Interactive graphical tools for three-dimensional mesh redistribution

    Energy Technology Data Exchange (ETDEWEB)

    Dobbs, L.A.

    1996-03-01

    Three-dimensional meshes modeling nonlinear problems such as sheet metal forming, metal forging, heat transfer during welding, the propagation of microwaves through gases, and automobile crashes require highly refined meshes in local areas to accurately represent areas of high curvature, stress, and strain. These locally refined areas develop late in the simulation and/or move during the course of the simulation, thus making it difficult to predict their exact location. This thesis is a systematic study of new tools scientists can use with redistribution algorithms to enhance the solution results and reduce the time to build, solve, and analyze nonlinear finite element problems. Participatory design techniques including Contextual Inquiry and Design were used to study and analyze the process of solving such problems. This study and analysis led to the in-depth understanding of the types of interactions performed by FEM scientists. Based on this understanding, a prototype tool was designed to support these interactions. Scientists participated in evaluating the design as well as the implementation of the prototype tool. The study, analysis, prototype tool design, and the results of the evaluation of the prototype tool are described in this thesis.

  12. Connectivity editing for quad-dominant meshes

    KAUST Repository

    Peng, Chihan

    2013-08-01

    We propose a connectivity editing framework for quad-dominant meshes. In our framework, the user can edit the mesh connectivity to control the location, type, and number of irregular vertices (with more or fewer than four neighbors) and irregular faces (non-quads). We provide a theoretical analysis of the problem, discuss what edits are possible and impossible, and describe how to implement an editing framework that realizes all possible editing operations. In the results, we show example edits and illustrate the advantages and disadvantages of different strategies for quad-dominant mesh design. © 2013 The Author(s) Computer Graphics Forum © 2013 The Eurographics Association and John Wiley & Sons Ltd.

  13. NASA Lewis Meshed VSAT Workshop meeting summary

    Science.gov (United States)

    Ivancic, William

    1993-11-01

    NASA Lewis Research Center's Space Electronics Division (SED) hosted a workshop to address specific topics related to future meshed very small-aperture terminal (VSAT) satellite communications networks. The ideas generated by this workshop will help to identify potential markets and focus technology development within the commercial satellite communications industry and NASA. The workshop resulted in recommendations concerning these principal points of interest: the window of opportunity for a meshed VSAT system; system availability; ground terminal antenna sizes; recommended multifrequency for time division multiple access (TDMA) uplink; a packet switch design concept for narrowband; and fault tolerance design concepts. This report presents a summary of group presentations and discussion associated with the technological, economic, and operational issues of meshed VSAT architectures that utilize processing satellites.

  14. Stochastic domain decomposition for time dependent adaptive mesh generation

    CERN Document Server

    Bihlo, Alexander; Walsh, Emily J

    2015-01-01

    The efficient generation of meshes is an important component in the numerical solution of problems in physics and engineering. Of interest are situations where global mesh quality and a tight coupling to the solution of the physical partial differential equation (PDE) is important. We consider parabolic PDE mesh generation and present a method for the construction of adaptive meshes in two spatial dimensions using stochastic domain decomposition that is suitable for an implementation in a multi- or many-core environment. Methods for mesh generation on periodic domains are also provided. The mesh generator is coupled to a time dependent physical PDE and the system is evolved using an alternating solution procedure. The method uses the stochastic representation of the exact solution of a parabolic linear mesh generator to find the location of an adaptive mesh along the (artificial) subdomain interfaces. The deterministic evaluation of the mesh over each subdomain can then be obtained completely independently us...

  15. Mesh adaptation on the sphere using optimal transport and the numerical solution of a Monge-Ampère type equation

    Science.gov (United States)

    Weller, Hilary; Browne, Philip; Budd, Chris; Cullen, Mike

    2016-03-01

    An equation of Monge-Ampère type has, for the first time, been solved numerically on the surface of the sphere in order to generate optimally transported (OT) meshes, equidistributed with respect to a monitor function. Optimal transport generates meshes that keep the same connectivity as the original mesh, making them suitable for r-adaptive simulations, in which the equations of motion can be solved in a moving frame of reference in order to avoid mapping the solution between old and new meshes and to avoid load balancing problems on parallel computers. The semi-implicit solution of the Monge-Ampère type equation involves a new linearisation of the Hessian term, and exponential maps are used to map from old to new meshes on the sphere. The determinant of the Hessian is evaluated as the change in volume between old and new mesh cells, rather than using numerical approximations to the gradients. OT meshes are generated to compare with centroidal Voronoi tessellations on the sphere and are found to have advantages and disadvantages; OT equidistribution is more accurate, the number of iterations to convergence is independent of the mesh size, face skewness is reduced and the connectivity does not change. However anisotropy is higher and the OT meshes are non-orthogonal. It is shown that optimal transport on the sphere leads to meshes that do not tangle. However, tangling can be introduced by numerical errors in calculating the gradient of the mesh potential. Methods for alleviating this problem are explored. Finally, OT meshes are generated using observed precipitation as a monitor function, in order to demonstrate the potential power of the technique.

  16. Development of an Accurate Urban Modeling System Using CAD/GIS Data for Atmosphere Environmental Simulation

    Institute of Scientific and Technical Information of China (English)

    Tomosato Takada; Kazuo Kashiyama

    2008-01-01

    This paper presents an urban modeling system using CAD/GIS data for atmosphere environ- mental simulation, such as wind flow and contaminant spread in urban area. The CAD data is used for the shape modeling for the high-storied buildings and civil structures with complicated shape since the data for that is not included in the 3D-GIS data accurately. The unstructured mesh based on the tetrahedron element is employed in order to express the urban structures with complicated shape accurately. It is difficult to un- derstand the quality of shape model and mesh by the conventional visualization technique. In this paper, the stereoscopic visualization using virtual reality (VR) technology is employed for the vedfication of the quality of shape model and mesh. The present system is applied to the atmosphere environmental simulation in ur- ban area and is shown to be an useful planning and design tool to investigate the atmosphere environmental problem.

  17. Development of Classification and Story Building Data for Accurate Earthquake Damage Estimation

    Science.gov (United States)

    Sakai, Yuki; Fukukawa, Noriko; Arai, Kensuke

    We investigated the method of developing classification and story building data from census population database in order to estimate earthquake damage more accurately especially in the urban area presuming that there are correlation between numbers of non-wooden or high-rise buildings and the population. We formulated equations of estimating numbers of wooden houses, low-to-mid-rise(1-9 story) and high-rise(over 10 story) non-wooden buildings in the 1km mesh from night and daytime population database based on the building data we investigated and collected in the selected 20 meshs in Kanto area. We could accurately estimate the numbers of three classified buildings by the formulated equations, but in some special cases, such as the apartment block mesh, the estimated values are quite different from actual values.

  18. The role of fine-scale anatomical structure in the dynamics of reentry in computational models of the rabbit ventricles.

    Science.gov (United States)

    Bishop, Martin J; Plank, Gernot

    2012-09-15

    experimental reports in larger animals, appear to play only a minor role in the maintenance of fibrillatory arrhythmias. These findings also have important implications in optimising the level of detail required in anatomical computational meshes frequently used in arrhythmia investigations.

  19. Development of modular cable mesh deployable antenna

    Science.gov (United States)

    Meguro, Akira; Mitsugi, Jin; Andou, Kazuhide

    1993-03-01

    This report describes a concept and key technologies for the modular mesh deployable antenna. The antenna reflector composed of independently manufactured and tested modules is presented. Each module consists of a mesh surface, a cable network, and a deployable truss structure. The cable network comprises three kinds of cables, surface, tie, and back cables. Adjustment of tie cable lengths improves the surface accuracy. Synchronous deployment truss structures are considered as a supporting structure. Their design method, BBM's (Bread Board Model) and deployment analysis are also explained.

  20. Multigrid solution strategies for adaptive meshing problems

    Science.gov (United States)

    Mavriplis, Dimitri J.

    1995-01-01

    This paper discusses the issues which arise when combining multigrid strategies with adaptive meshing techniques for solving steady-state problems on unstructured meshes. A basic strategy is described, and demonstrated by solving several inviscid and viscous flow cases. Potential inefficiencies in this basic strategy are exposed, and various alternate approaches are discussed, some of which are demonstrated with an example. Although each particular approach exhibits certain advantages, all methods have particular drawbacks, and the formulation of a completely optimal strategy is considered to be an open problem.

  1. Adaptive Mesh Refinement for Storm Surge

    CERN Document Server

    Mandli, Kyle T

    2014-01-01

    An approach to utilizing adaptive mesh refinement algorithms for storm surge modeling is proposed. Currently numerical models exist that can resolve the details of coastal regions but are often too costly to be run in an ensemble forecasting framework without significant computing resources. The application of adaptive mesh refinement algorithms substantially lowers the computational cost of a storm surge model run while retaining much of the desired coastal resolution. The approach presented is implemented in the \\geoclaw framework and compared to \\adcirc for Hurricane Ike along with observed tide gauge data and the computational cost of each model run.

  2. MUSIC: a mesh-unrestricted simulation code

    International Nuclear Information System (INIS)

    A general formalism to solve the G-group neutron diffusion equation is described. The G-group flux is represented by complementing an ''asymptotic'' mode with (G-1) ''transient'' modes. A particular reduction-to-one-group technique gives a high computational efficiency. MUSIC, a 2-group code using the above formalism, is presented. MUSIC is demonstrated on a fine-mesh calculation and on 2 coarse-mesh core calculations: a heavy-water reactor (HWR) problem and the 2-D lightwater reactor (LWR) IAEA benchmark. Comparison is made to finite-difference results

  3. Relativistic MHD with Adaptive Mesh Refinement

    CERN Document Server

    Anderson, M; Liebling, S L; Neilsen, D; Anderson, Matthew; Hirschmann, Eric; Liebling, Steven L.; Neilsen, David

    2006-01-01

    We solve the relativistic magnetohydrodynamics (MHD) equations using a finite difference Convex ENO method (CENO) in 3+1 dimensions within a distributed parallel adaptive mesh refinement (AMR) infrastructure. In flat space we examine a Balsara blast wave problem along with a spherical blast wave and a relativistic rotor test both with unigrid and AMR simulations. The AMR simulations substantially improve performance while reproducing the resolution equivalent unigrid simulation results. We also investigate the impact of hyperbolic divergence cleaning for the spherical blast wave and relativistic rotor. We include unigrid and mesh refinement parallel performance measurements for the spherical blast wave.

  4. Adaptive mesh refinement for storm surge

    KAUST Repository

    Mandli, Kyle T.

    2014-03-01

    An approach to utilizing adaptive mesh refinement algorithms for storm surge modeling is proposed. Currently numerical models exist that can resolve the details of coastal regions but are often too costly to be run in an ensemble forecasting framework without significant computing resources. The application of adaptive mesh refinement algorithms substantially lowers the computational cost of a storm surge model run while retaining much of the desired coastal resolution. The approach presented is implemented in the GeoClaw framework and compared to ADCIRC for Hurricane Ike along with observed tide gauge data and the computational cost of each model run. © 2014 Elsevier Ltd.

  5. Local mesh refinement for incompressible fluid flow with free surfaces

    Energy Technology Data Exchange (ETDEWEB)

    Terasaka, H.; Kajiwara, H.; Ogura, K. [Tokyo Electric Power Company (Japan)] [and others

    1995-09-01

    A new local mesh refinement (LMR) technique has been developed and applied to incompressible fluid flows with free surface boundaries. The LMR method embeds patches of fine grid in arbitrary regions of interest. Hence, more accurate solutions can be obtained with a lower number of computational cells. This method is very suitable for the simulation of free surface movements because free surface flow problems generally require a finer computational grid to obtain adequate results. By using this technique, one can place finer grids only near the surfaces, and therefore greatly reduce the total number of cells and computational costs. This paper introduces LMR3D, a three-dimensional incompressible flow analysis code. Numerical examples calculated with the code demonstrate well the advantages of the LMR method.

  6. Flow Simulation in Engine Cylinder with Spring Mesh

    Directory of Open Access Journals (Sweden)

    M. H. Shojaeefard

    2008-01-01

    Full Text Available This investigation presents results from numerical simulation of the air flow in Spark Ignition Engine (SI engine cylinder. Accurate modeling of the flow in cylinder is a key part of successful combustion simulation. The most usual numerical method in Computational Fluid Dynamics (CFD is finite volume. In this investigation an important, common fluid flow patterns in CFD simulations, namely, Tumble motion typical in automotive engines and RNG k-ε turbulence model were used. The air flow in a two-valve engine cylinder during 720 degree of crank angle was investigated by using a CFD code which is basis on finite volume and codes which were written in visual C++ environment. Dynamic Mesh and Moving Boundary capability were used for this model. The comparison results with previous researches results, Kiva-3v and PIV experimental, show good agreement.

  7. Clinical Outcomes and Urodynamic Effects of Tailored Transvaginal Mesh Surgery for Pelvic Organ Prolapse

    Directory of Open Access Journals (Sweden)

    Ting-Chen Chang

    2015-01-01

    Full Text Available Objective. To evaluate the clinical outcomes and urodynamic effects of tailored anterior transvaginal mesh surgery (ATVM and tailored posterior transvaginal mesh surgery (PTVM. Methods. We developed ATVM for the simultaneous correction of cystocele and stress urinary incontinence and PTVM for the simultaneous correction of enterocoele, uterine prolapse, vaginal stump prolapse, and rectocele. Results. A total of 104 women enrolled. The median postsurgical follow-up was 25.5 months. The anatomic cure rate was 98.1% (102/104. Fifty-eight patients underwent urodynamic studies before and after surgeries. The pad weight decreased from 29.3 ± 43.1 to 6.4 ± 20.9 g at 3 months. Among the 20 patients with ATVM, 13 patients had objective stress urinary incontinence (SUI at baseline while 8 patients came to have no demonstrated SUI (NDSUI, and 2 improved after surgery. Among the 38 patients who underwent ATVM and PTVM, 24 had objective SUI at baseline while 18 came to have NDSUI, and 2 improved after surgery. Mesh extrusion (n = 4, vaginal hematoma (n = 3, and voiding difficulty (n = 2 were noted postoperatively. Quality of life was substantially improved. Conclusions. Our findings document the advantages of these two novel pelvic reconstructive surgeries for pelvic organ prolapse, which had a positive impact on quality of life. ATVM surgery additionally provided an anti-incontinence effect. This clinical trial is registered at ClinicalTrials.gov (NCT02178735.

  8. Adaptive Mesh Refinement in Reactive Transport Modeling of Subsurface Environments

    Science.gov (United States)

    Molins, S.; Day, M.; Trebotich, D.; Graves, D. T.

    2015-12-01

    Adaptive mesh refinement (AMR) is a numerical technique for locally adjusting the resolution of computational grids. AMR makes it possible to superimpose levels of finer grids on the global computational grid in an adaptive manner allowing for more accurate calculations locally. AMR codes rely on the fundamental concept that the solution can be computed in different regions of the domain with different spatial resolutions. AMR codes have been applied to a wide range of problem including (but not limited to): fully compressible hydrodynamics, astrophysical flows, cosmological applications, combustion, blood flow, heat transfer in nuclear reactors, and land ice and atmospheric models for climate. In subsurface applications, in particular, reactive transport modeling, AMR may be particularly useful in accurately capturing concentration gradients (hence, reaction rates) that develop in localized areas of the simulation domain. Accurate evaluation of reaction rates is critical in many subsurface applications. In this contribution, we will discuss recent applications that bring to bear AMR capabilities on reactive transport problems from the pore scale to the flood plain scale.

  9. Complex anatomic variation in the brachial region.

    Science.gov (United States)

    Troupis, Th; Michalinos, A; Protogerou, V; Mazarakis, A; Skandalakis, P

    2015-01-01

    Authors describe a case of a complex anatomic variation discovered during dissection of the humeral region. On the right side, brachial artery followed a superficial course. Musculocutaneous nerve did not pierce coracobrachialis muscle but instead passed below the muscle before continuing in the forearm. On the left side, a communication between musculocutaneous and median nerve was dissected. Those variations are analytically presented with a brief review on their anatomic and clinical implications. Considerations on their embryological origin are attempted.

  10. Laparoscopic preperitoneal mesh repair using a novel self-adhesive mesh

    OpenAIRE

    Nik Kosai; Paul Anthony Sutton; Jonathan Evans; Joseph Varghese

    2011-01-01

    Prosthetic mesh is now used routinely in inguinal hernia repairs, although its fixation is thought to be a potential cause of chronic groin pain. The Parietene ProGrip™ (TYCO Healthcare) mesh, which is semi-resorbable and incorporates self-fixing properties, has been shown to provide satisfactory repair in open surgery. We describe the use of this mesh in TAPP hernia repair, which has not previously been reported in the literature. A prospective study of 29 patients showed a mean operative ti...

  11. Performance of the hybrid wireless mesh protocol for wireless mesh networks

    DEFF Research Database (Denmark)

    Boye, Magnus; Staalhagen, Lars

    2010-01-01

    Wireless mesh networks offer a new way of providing end-user access and deploying network infrastructure. Though mesh networks offer a price competitive solution to wired networks, they also come with a set of new challenges such as optimal path selection, channel utilization, and load balancing....... These challenges must first be overcome before satisfactory network stability and throughput can be achieved. This paper studies the performance of the Hybrid Wireless Mesh Protocol, the proposed routing protocol for the upcoming IEEE 802.11s standard. HWMP supports two modes of path selection: reactive...

  12. Terrain-driven unstructured mesh development through semi-automatic vertical feature extraction

    Science.gov (United States)

    Bilskie, Matthew V.; Coggin, David; Hagen, Scott C.; Medeiros, Stephen C.

    2015-12-01

    A semi-automated vertical feature terrain extraction algorithm is described and applied to a two-dimensional, depth-integrated, shallow water equation inundation model. The extracted features describe what are commonly sub-mesh scale elevation details (ridge and valleys), which may be ignored in standard practice because adequate mesh resolution cannot be afforded. The extraction algorithm is semi-automated, requires minimal human intervention, and is reproducible. A lidar-derived digital elevation model (DEM) of coastal Mississippi and Alabama serves as the source data for the vertical feature extraction. Unstructured mesh nodes and element edges are aligned to the vertical features and an interpolation algorithm aimed at minimizing topographic elevation error assigns elevations to mesh nodes via the DEM. The end result is a mesh that accurately represents the bare earth surface as derived from lidar with element resolution in the floodplain ranging from 15 m to 200 m. To examine the influence of the inclusion of vertical features on overland flooding, two additional meshes were developed, one without crest elevations of the features and another with vertical features withheld. All three meshes were incorporated into a SWAN+ADCIRC model simulation of Hurricane Katrina. Each of the three models resulted in similar validation statistics when compared to observed time-series water levels at gages and post-storm collected high water marks. Simulated water level peaks yielded an R2 of 0.97 and upper and lower 95% confidence interval of ∼ ± 0.60 m. From the validation at the gages and HWM locations, it was not clear which of the three model experiments performed best in terms of accuracy. Examination of inundation extent among the three model results were compared to debris lines derived from NOAA post-event aerial imagery, and the mesh including vertical features showed higher accuracy. The comparison of model results to debris lines demonstrates that additional

  13. Highly Symmetric and Congruently Tiled Meshes for Shells and Domes

    Science.gov (United States)

    Rasheed, Muhibur; Bajaj, Chandrajit

    2016-01-01

    We describe the generation of all possible shell and dome shapes that can be uniquely meshed (tiled) using a single type of mesh face (tile), and following a single meshing (tiling) rule that governs the mesh (tile) arrangement with maximal vertex, edge and face symmetries. Such tiling arrangements or congruently tiled meshed shapes, are frequently found in chemical forms (fullerenes or Bucky balls, crystals, quasi-crystals, virus nano shells or capsids), and synthetic shapes (cages, sports domes, modern architectural facades). Congruently tiled meshes are both aesthetic and complete, as they support maximal mesh symmetries with minimal complexity and possess simple generation rules. Here, we generate congruent tilings and meshed shape layouts that satisfy these optimality conditions. Further, the congruent meshes are uniquely mappable to an almost regular 3D polyhedron (or its dual polyhedron) and which exhibits face-transitive (and edge-transitive) congruency with at most two types of vertices (each type transitive to the other). The family of all such congruently meshed polyhedra create a new class of meshed shapes, beyond the well-studied regular, semi-regular and quasi-regular classes, and their duals (platonic, Catalan and Johnson). While our new mesh class is infinite, we prove that there exists a unique mesh parametrization, where each member of the class can be represented by two integer lattice variables, and moreover efficiently constructable.

  14. Development of 5- and 10-year-old pediatric phantoms based on polygon mesh surfaces

    Energy Technology Data Exchange (ETDEWEB)

    Melo Lima, V. J. de; Cassola, V. F.; Kramer, R.; Oliveira Lira, C. A. B. de; Khoury, H. J.; Vieira, J. W. [Department of Anatomy, Federal University of Pernambuco, Avenida Professor Moraes Rego 1235, CEP 50670-901, Recife, Pernambuco (Brazil); Department of Nuclear Energy, Federal University of Pernambuco, Avenida Professor Luiz Freire 1000, CEP 50740-540, Recife, Pernambuco (Brazil); Federal Institute of Education, Science and Technology of Pernambuco, Avenida Professor Luiz Freire 500, CEP 50740-540, Recife, Pernambuco, Brazil and Polytechnic School of Pernambuco, University of Pernambuco, Rua Benfica 455, CEP 50751-460, Recife, Pernambuco (Brazil)

    2011-08-15

    Purpose: The purpose of this study is the development of reference pediatric phantoms for 5- and 10-year-old children to be used for the calculation of organ and tissue equivalent doses in radiation protection. Methods: The study proposes a method for developing anatomically highly sophisticated pediatric phantoms without using medical images. The 5- and 10-year-old male and female phantoms presented here were developed using 3D modeling software applied to anatomical information taken from atlases and textbooks. The method uses polygon mesh surfaces to model body contours, the shape of organs as well as their positions, and orientations in the human body. Organ and tissue masses comply with the corresponding data given by the International Commission on Radiological Protection (ICRP) for the 5- and 10-year-old reference children. Bones were segmented into cortical bone, spongiosa, medullary marrow, and cartilage to allow for the use of micro computer tomographic ({mu}CT) images of trabecular bone for skeletal dosimetry. Results: The four phantoms, a male and a female for each age, and their organs are presented in 3D images and their organ and tissue masses in tables which show the compliance of the ICRP reference values. Dosimetric data, calculated for the reference pediatric phantoms by Monte Carlo methods were compared with corresponding data from adult mesh phantoms and pediatric stylized phantoms. The comparisons show reasonable agreement if the anatomical differences between the phantoms are properly taken into account. Conclusions: Pediatric phantoms were developed without using medical images of patients or volunteers for the first time. The models are reference phantoms, suitable for regulatory dosimetry, however, the 3D modeling method can also be applied to medical images to develop patient-specific phantoms.

  15. A Patch-based Partitioner for Structured Adaptive Mesh Refinement : Implementation and Evaluation

    OpenAIRE

    Vakili, Abbas

    2008-01-01

    To increase the speed of computer simulations we solve partial differential equations (PDEs) using structured adaptive mesh refinement (SAMR). During the execution of an SAMR-application, finer grids are superimposed dynamically on coarser grids where a more accurate solution is needed in the computation area. To further decrease the computation time, we use parallel computers and divide the computational work between the processors. This gives rise to challenging load balancing problem. The ...

  16. A free surface finite element model for low Froude number mould filling problems on fixed meshes

    OpenAIRE

    Coppola Owen, Ángel H.; Codina, Ramon

    2011-01-01

    The simulation of low Froude number mould filling problems on fixed meshes presents significant difficulties. As the Froude number decreases, the coupling between the position of the interface and the resulting flow field increases. The usual two-phase flow model provides poor results for such flow. In order to overcome the difficulties, a free surface model that applies boundary conditions at the interface accurately is used. Moreover, the use of wall laws on curved boundaries also fails in ...

  17. Simulation of external flows using a hybrid particle mesh vortex method

    DEFF Research Database (Denmark)

    Spietz, Henrik; Hejlesen, Mads Mølholm; Walther, Jens Honore

    The long-term goal of this project is to develop and apply state-of-the-art simulation software to enable accurate prediction of fluid structure interaction, specifically vortex-induced-vibration and flutter of long-span suspension bridges to avoid error-prone structural designs. In the following...... a hybrid particle mesh vortex method is applied for the simulation of uniform flow past stationary solid obstacles of arbitrary shapes....

  18. A first collision source method for ATTILA, an unstructured tetrahedral mesh discrete ordinates code

    Energy Technology Data Exchange (ETDEWEB)

    Wareing, T.A.; Morel, J.E.; Parsons, D.K.

    1998-12-01

    A semi-analytic first collision source method is developed for the transport code, ATTILA, a three-dimensional, unstructured tetrahedral mesh, discrete-ordinates code. This first collision source method is intended to mitigate ray effects due to point sources. The method is third-order accurate, which is the same order of accuracy as the linear-discontinuous spatial differencing scheme used in ATTILA. Numerical results are provided to demonstrate the accuracy and efficiency of the first collision source method.

  19. An Anatomically Validated Brachial Plexus Contouring Method for Intensity Modulated Radiation Therapy Planning

    Energy Technology Data Exchange (ETDEWEB)

    Van de Velde, Joris, E-mail: joris.vandevelde@ugent.be [Department of Anatomy, Ghent University, Ghent (Belgium); Department of Radiotherapy, Ghent University, Ghent (Belgium); Audenaert, Emmanuel [Department of Physical Medicine and Orthopedic Surgery, Ghent University, Ghent (Belgium); Speleers, Bruno; Vercauteren, Tom; Mulliez, Thomas [Department of Radiotherapy, Ghent University, Ghent (Belgium); Vandemaele, Pieter; Achten, Eric [Department of Radiology, Ghent University, Ghent (Belgium); Kerckaert, Ingrid; D' Herde, Katharina [Department of Anatomy, Ghent University, Ghent (Belgium); De Neve, Wilfried [Department of Radiotherapy, Ghent University, Ghent (Belgium); Van Hoof, Tom [Department of Anatomy, Ghent University, Ghent (Belgium)

    2013-11-15

    Purpose: To develop contouring guidelines for the brachial plexus (BP) using anatomically validated cadaver datasets. Magnetic resonance imaging (MRI) and computed tomography (CT) were used to obtain detailed visualizations of the BP region, with the goal of achieving maximal inclusion of the actual BP in a small contoured volume while also accommodating for anatomic variations. Methods and Materials: CT and MRI were obtained for 8 cadavers positioned for intensity modulated radiation therapy. 3-dimensional reconstructions of soft tissue (from MRI) and bone (from CT) were combined to create 8 separate enhanced CT project files. Dissection of the corresponding cadavers anatomically validated the reconstructions created. Seven enhanced CT project files were then automatically fitted, separately in different regions, to obtain a single dataset of superimposed BP regions that incorporated anatomic variations. From this dataset, improved BP contouring guidelines were developed. These guidelines were then applied to the 7 original CT project files and also to 1 additional file, left out from the superimposing procedure. The percentage of BP inclusion was compared with the published guidelines. Results: The anatomic validation procedure showed a high level of conformity for the BP regions examined between the 3-dimensional reconstructions generated and the dissected counterparts. Accurate and detailed BP contouring guidelines were developed, which provided corresponding guidance for each level in a clinical dataset. An average margin of 4.7 mm around the anatomically validated BP contour is sufficient to accommodate for anatomic variations. Using the new guidelines, 100% inclusion of the BP was achieved, compared with a mean inclusion of 37.75% when published guidelines were applied. Conclusion: Improved guidelines for BP delineation were developed using combined MRI and CT imaging with validation by anatomic dissection.

  20. Functionalized Nanofiber Meshes Enhance Immunosorbent Assays.

    Science.gov (United States)

    Hersey, Joseph S; Meller, Amit; Grinstaff, Mark W

    2015-12-01

    Three-dimensional substrates with high surface-to-volume ratios and subsequently large protein binding capacities are of interest for advanced immunosorbent assays utilizing integrated microfluidics and nanosensing elements. A library of bioactive and antifouling electrospun nanofiber substrates, which are composed of high-molecular-weight poly(oxanorbornene) derivatives, is described. Specifically, a set of copolymers are synthesized from three 7-oxanorbornene monomers to create a set of water insoluble copolymers with both biotin (bioactive) and triethylene glycol (TEG) (antifouling) functionality. Porous three-dimensional nanofiber meshes are electrospun from these copolymers with the ability to specifically bind streptavidin while minimizing the nonspecific binding of other proteins. Fluorescently labeled streptavidin is used to quantify the streptavidin binding capacity of each mesh type through confocal microscopy. A simplified enzyme-linked immunosorbent assay (ELISA) is presented to assess the protein binding capabilities and detection limits of these nanofiber meshes under both static conditions (26 h) and flow conditions (1 h) for a model target protein (i.e., mouse IgG) using a horseradish peroxidase (HRP) colorimetric assay. Bioactive and antifouling nanofiber meshes outperform traditional streptavidin-coated polystyrene plates under flow, validating their use in future advanced immunosorbent assays and their compatibility with microfluidic-based biosensors.

  1. Solid Mesh Registration for Radiotherapy Treatment Planning

    DEFF Research Database (Denmark)

    Noe, Karsten Østergaard; Sørensen, Thomas Sangild

    2010-01-01

    We present an algorithm for solid organ registration of pre-segmented data represented as tetrahedral meshes. Registration of the organ surface is driven by force terms based on a distance field representation of the source and reference shapes. Registration of internal morphology is achieved usi...

  2. Enhancement of mobile C-arm cone-beam reconstruction using prior anatomical models

    Science.gov (United States)

    Sadowsky, Ofri; Lee, Junghoon; Sutter, Edward G.; Wall, Simon J.; Prince, Jerry L.; Taylor, Russell H.

    2009-02-01

    We demonstrate an improvement to cone-beam tomographic imaging by using a prior anatomical model. A protocol for scanning and reconstruction has been designed and implemented for a conventional mobile C-arm: a 9 inch image-intensifier OEC-9600. Due to the narrow field of view (FOV), the reconstructed image contains strong truncation artifacts. We propose to improve the reconstructed images by fusing the observed x-ray data with computed projections of a prior 3D anatomical model, derived from a subject-specific CT or from a statistical database (atlas), and co-registered (3D/2D) to the x-rays. The prior model contains a description of geometry and radiodensity as a tetrahedral mesh shape and density polynomials, respectively. A CT-based model can be created by segmentation, meshing and polynomial fitting of the object's CT study. The statistical atlas is created through principal component analysis (PCA) of a collection of mesh instances deformably-registered (3D/3D) to patient datasets. The 3D/2D registration method optimizes a pixel-based similarity score (mutual information) between the observed x-rays and the prior. The transformation involves translation, rotation and shape deformation based on the atlas. After registration, the image intensities of observed and prior projections are matched and adjusted, and the two information sources are blended as inputs to a reconstruction algorithm. We demonstrate recostruction results of three cadaveric specimens, and the effect of fusing prior data to compensate for truncation. Further uses of hybrid reconstruction, such as compensation for the scan's limited arc length, are suggested for future research.

  3. Laparoscopic preperitoneal mesh repair using a novel self-adhesive mesh

    Directory of Open Access Journals (Sweden)

    Nik Kosai

    2011-01-01

    Full Text Available Prosthetic mesh is now used routinely in inguinal hernia repairs, although its fixation is thought to be a potential cause of chronic groin pain. The Parietene ProGrip™ (TYCO Healthcare mesh, which is semi-resorbable and incorporates self-fixing properties, has been shown to provide satisfactory repair in open surgery. We describe the use of this mesh in TAPP hernia repair, which has not previously been reported in the literature. A prospective study of 29 patients showed a mean operative time to be 47.6 min, with 96% of patients discharged home on the day of surgery or the day after. Visual analog pain scales (out of 10 reduced from 4 preoperatively to 0 at 6 months, and only 1 patient suffered a minor wound complication. The use of this mesh in transabdominal preperitoneal hernia repair is therefore feasible, safe, and may reduce postoperative pain.

  4. The mesh-matching algorithm: an automatic 3D mesh generator for Finite element structures

    CERN Document Server

    Couteau, B; Lavallee, S; Payan, Yohan; Lavallee, St\\'{e}phane

    2000-01-01

    Several authors have employed Finite Element Analysis (FEA) for stress and strain analysis in orthopaedic biomechanics. Unfortunately, the use of three-dimensional models is time consuming and consequently the number of analysis to be performed is limited. The authors have investigated a new method allowing automatically 3D mesh generation for structures as complex as bone for example. This method called Mesh-Matching (M-M) algorithm generated automatically customized 3D meshes of bones from an already existing model. The M-M algorithm has been used to generate FE models of ten proximal human femora from an initial one which had been experimentally validated. The new meshes seemed to demonstrate satisfying results.

  5. CUBIT mesh generation environment. Volume 1: Users manual

    Energy Technology Data Exchange (ETDEWEB)

    Blacker, T.D.; Bohnhoff, W.J.; Edwards, T.L. [and others

    1994-05-01

    The CUBIT mesh generation environment is a two- and three-dimensional finite element mesh generation tool which is being developed to pursue the goal of robust and unattended mesh generation--effectively automating the generation of quadrilateral and hexahedral elements. It is a solid-modeler based preprocessor that meshes volume and surface solid models for finite element analysis. A combination of techniques including paving, mapping, sweeping, and various other algorithms being developed are available for discretizing the geometry into a finite element mesh. CUBIT also features boundary layer meshing specifically designed for fluid flow problems. Boundary conditions can be applied to the mesh through the geometry and appropriate files for analysis generated. CUBIT is specifically designed to reduce the time required to create all-quadrilateral and all-hexahedral meshes. This manual is designed to serve as a reference and guide to creating finite element models in the CUBIT environment.

  6. Moving mesh generation with a sequential approach for solving PDEs

    DEFF Research Database (Denmark)

    physical and mesh equations suffers typically from long computation time due to highly nonlinear coupling between the two equations. Moreover, the extended system (physical and mesh equations) may be sensitive to the tuning parameters such as a temporal relaxation factor. It is therefore useful to design a......In moving mesh methods, physical PDEs and a mesh equation derived from equidistribution of an error metrics (so-called the monitor function) are simultaneously solved and meshes are dynamically concentrated on steep regions (Lim et al., 2001). However, the simultaneous solution procedure of...... adaptive grid method (local refinement by adding/deleting the meshes at a discrete time level) as well as of efficiency for the dynamic adaptive grid method (or moving mesh method) where the number of meshes is not changed. For illustration, a phase change problem is solved with the decomposition algorithm....

  7. Simple optimization method for EMI mesh pattern design

    Science.gov (United States)

    Alpman, Mehmet Erhan; Senger, Tolga

    2014-05-01

    Metallic mesh coatings are used on visible and infrared windows and domes widely to provide shielding from EMI (Electromagnetic Interference). In this paper, different EMI mesh geometries are compared with each other regarding various performance parameters. But to decide the best fitting EMI mesh geometry to particular optic system is a little bit complicated issue. Therefore, we try to find a simple optimization methodology to decide best EMI mesh geometry design that fits our particular high performance ISR (Intelligence, Surveillance and Reconnaissance) systems.

  8. Problem-adapted mesh generation with FEM-features

    OpenAIRE

    Werner, Horst; Weber, Christian; Schilke, Martin

    2000-01-01

    Today automatic meshing of CAD geometry is the most common method of FEM mesh generation. However, to get results of acceptable accuracy with universal meshing algorithms it is necessary to use rather small-sized elements which leads to high memory and CPU time consumption. Furthermore, the irregularity of automatically generatated meshes makes it difficult to create well-defined local areas with different material properties. A solution for this problem is the application of predefined build...

  9. Lateral laryngopharyngeal diverticulum: anatomical and videofluoroscopic study

    Energy Technology Data Exchange (ETDEWEB)

    Costa, Milton Melciades Barbosa [Universidade Federal do Rio de Janeiro ICB/CCS/UFRJ, Laboratorio de Motilidade Digestiva e Imagem, S. F1-008, Departamento de Anatomia, Rio de Janeiro (Brazil); Koch, Hilton Augusto [Universidade Federal do Rio de Janeiro ICB/CCS/UFRJ, Departamento de Radiologia, Rio de Janeiro (Brazil)

    2005-07-01

    The aims were to characterize the anatomical region where the lateral laryngopharyngeal protrusion occurs and to define if this protrusion is a normal or a pathological entity. This protrusion was observed on frontal contrasted radiographs as an addition image on the upper portion of the laryngopharynx. We carried out a plane-by-plane qualitative anatomical study through macroscopic and mesoscopic surgical dissection on 12 pieces and analyzed through a videofluoroscopic method on frontal incidence the pharyngeal phase of the swallowing process of 33 patients who had a lateral laryngopharyngeal protrusion. The anatomical study allowed us to identify the morphological characteristics that configure the high portion of the piriform recess as a weak anatomical point. The videofluoroscopic study allowed us to observe the laryngopharyngeal protrusion and its relation to pharyngeal repletion of the contrast medium. All kinds of the observed protrusions could be classified as ''lateral laryngopharyngeal diverticula.'' The lateral diverticula were more frequent in older people. These lateral protrusions can be found on one or both sides, usually with a small volume, without sex or side prevalence. This formation is probably a sign of a pharyngeal transference difficulty associated with a deficient tissue resistance in the weak anatomical point of the high portion of the piriform recess. (orig.)

  10. A Novel Operative Procedure for Pelvic Organ Prolapse Utilizing a MRI-Visible Mesh Implant: Safety and Outcome of Modified Laparoscopic Bilateral Sacropexy

    Directory of Open Access Journals (Sweden)

    Ralf Joukhadar

    2015-01-01

    Full Text Available Introduction. Sacropexy is a generally applied treatment of prolapse, yet there are known possible complications of it. An essential need exists for better alloplastic materials. Methods. Between April 2013 and June 2014, we performed a modified laparoscopic bilateral sacropexy (MLBS in 10 patients using a MRI-visible PVDF mesh implant. Selected patients had prolapse POP-Q stages II-III and concomitant OAB. We studied surgery-related morbidity, anatomical and functional outcome, and mesh-visibility in MRI. Mean follow-up was 7.4 months. Results. Concomitant colporrhaphy was conducted in 1/10 patients. Anatomical success was defined as POP-Q stage 0-I. Apical success rate was 100% and remained stable. A recurrent cystocele was seen in 1/10 patients during follow-up without need for intervention. Out of 6 (6/10 patients with preoperative SUI, 5/6 were healed and 1/6 persisted. De-novo SUI was seen in 1/10 patients. Complications requiring a relaparoscopy were seen in 2/10 patients. 8/10 patients with OAB were relieved postoperatively. The first in-human magnetic resonance visualization of a prolapse mesh implant was performed and showed good quality of visualization. Conclusion. MLBS is a feasible and safe procedure with favorable anatomical and functional outcome and good concomitant healing rates of SUI and OAB. Prospective data and larger samples are required.

  11. Towards a large-scale scalable adaptive heart model using shallow tree meshes

    Science.gov (United States)

    Krause, Dorian; Dickopf, Thomas; Potse, Mark; Krause, Rolf

    2015-10-01

    Electrophysiological heart models are sophisticated computational tools that place high demands on the computing hardware due to the high spatial resolution required to capture the steep depolarization front. To address this challenge, we present a novel adaptive scheme for resolving the deporalization front accurately using adaptivity in space. Our adaptive scheme is based on locally structured meshes. These tensor meshes in space are organized in a parallel forest of trees, which allows us to resolve complicated geometries and to realize high variations in the local mesh sizes with a minimal memory footprint in the adaptive scheme. We discuss both a non-conforming mortar element approximation and a conforming finite element space and present an efficient technique for the assembly of the respective stiffness matrices using matrix representations of the inclusion operators into the product space on the so-called shallow tree meshes. We analyzed the parallel performance and scalability for a two-dimensional ventricle slice as well as for a full large-scale heart model. Our results demonstrate that the method has good performance and high accuracy.

  12. Anatomic Breast Coordinate System for Mammogram Analysis

    DEFF Research Database (Denmark)

    Karemore, Gopal Raghunath; Brandt, S; Karssemeijer, N;

    2011-01-01

    inside the breast. Most of the risk assessment and CAD modules use a breast region in a image centered Cartesian x,y coordinate system. Nevertheless, anatomical structure follows curve-linear trajectories. We examined an anatomical breast coordinate system that preserves the anatomical correspondence...... between the mammograms and allows extracting not only the aligned position but also the orientation aligned with the anatomy of the breast tissue structure. Materials and Methods The coordinate system used the nipple location as the point A and the border of the pectoral muscle as a line BC. The skin air...... was represented by geodesic distance (s) from nipple and parametric angle (¿) as shown in figure 1. The scoring technique called MTR (mammographic texture resemblance marker) used this breast coordinate system to extract Gaussian derivative features. The features extracted using the (x,y) and the curve...

  13. Overlay Share Mesh for Interactive Group Communication with High Dynamic

    Institute of Scientific and Technical Information of China (English)

    WU Yan-hua; CAI Yun-ze; XU Xiao-ming

    2007-01-01

    An overlay share mesh infrastructure is presented for high dynamic group communication systems, such as distributed interactive simulation (DIS) and distributed virtual environments (DVE). Overlay share mesh infrastructure can own better adapting ability for high dynamic group than tradition multi-tree multicast infrastructure by sharing links among different groups. The mechanism of overlay share mesh based on area of interest (AOI) was discussed in detail in this paper. A large number of simulation experiments were done and the permance of mesh infrastructure was studied. Experiments results proved that overlay mesh infrastructure owns better adaptability than traditional multi-tree infrastructure for high dynamic group communication systems.

  14. Effects of mesh resolution on hypersonic heating prediction

    Institute of Scientific and Technical Information of China (English)

    2011-01-01

    Aeroheating prediction is a challenging and critical problem for the design and optimization of hypersonic vehicles.One challenge is that the solution of the Navier-Stokes equations strongly depends on the computational mesh.In this letter,the effect of mesh resolution on heat flux prediction is studied.It is found that mesh-independent solutions can be obtained using fine mesh,whose accuracy is confirmed by results from kinetic particle simulation.It is analyzed that mesh-induced numerical error comes m...

  15. Adaptive triangular mesh coarsening with centroidal Voronoi tessellations

    Institute of Scientific and Technical Information of China (English)

    Zhen-yu SHU; Guo-zhao WANG; Chen-shi DONG

    2009-01-01

    We present a novel algorithm for adaptive triangular mesh coarsening. The algorithm has two stages. First, the input triangular mesh is refined by iteratively applying the adaptive subdivision operator that performs a so-called red-green split.Second, the refined mesh is simplified by a clustering algorithm based on centroidal Voronoi tessellations (CVTs). The accuracy and good quality of the output triangular mesh are achieved by combining adaptive subdivision and the CVTs technique. Test results showed the mesh coarsening scheme to be robust and effective. Examples are shown that validate the method.

  16. Polypropelene mesh eroding transverse colon following laparoscopic ventral hernia repair

    Directory of Open Access Journals (Sweden)

    Manash Ranjan Sahoo

    2013-01-01

    Full Text Available Polypropylene mesh when used in laparoscopic ventral hernia repair can produce the worst complication such as enterocutaneous fistula. We report an interesting case of incisional hernia operated with laparoscopic polypropylene mesh hernioplasty who subsequently developed an enterocutaneous fistula 1 month after surgery. A fistulogram showed dye entering into the transverse colon. On exploration, the culprit polypropylene mesh was found to have eroded into the mid-transverse colon causing the fistula. Resection and end-to-end anastomosis of the colon were done with the removal of the mesh. On literature review, polypropylene mesh erosion in to transverse colon is rare.

  17. Diffusive mesh relaxation in ALE finite element numerical simulations

    Energy Technology Data Exchange (ETDEWEB)

    Dube, E.I.

    1996-06-01

    The theory for a diffusive mesh relaxation algorithm is developed for use in three-dimensional Arbitary Lagrange/Eulerian (ALE) finite element simulation techniques. This mesh relaxer is derived by a variational principle for an unstructured 3D grid using finite elements, and incorporates hourglass controls in the numerical implementation. The diffusive coefficients are based on the geometric properties of the existing mesh, and are chosen so as to allow for a smooth grid that retains the general shape of the original mesh. The diffusive mesh relaxation algorithm is then applied to an ALE code system, and results from several test cases are discussed.

  18. Variational mesh segmentation via quadric surface fitting

    KAUST Repository

    Yan, Dongming

    2012-11-01

    We present a new variational method for mesh segmentation by fitting quadric surfaces. Each component of the resulting segmentation is represented by a general quadric surface (including plane as a special case). A novel energy function is defined to evaluate the quality of the segmentation, which combines both L2 and L2 ,1 metrics from a triangle to a quadric surface. The Lloyd iteration is used to minimize the energy function, which repeatedly interleaves between mesh partition and quadric surface fitting. We also integrate feature-based and simplification-based techniques in the segmentation framework, which greatly improve the performance. The advantages of our algorithm are demonstrated by comparing with the state-of-the-art methods. © 2012 Elsevier Ltd. All rights reserved.

  19. Partitioning of unstructured meshes for load balancing

    International Nuclear Information System (INIS)

    Many large-scale engineering and scientific calculations involve repeated updating of variables on an unstructured mesh. To do these types of computations on distributed memory parallel computers, it is necessary to partition the mesh among the processors so that the load balance is maximized and inter-processor communication time is minimized. This can be approximated by the problem, of partitioning a graph so as to obtain a minimum cut, a well-studied combinatorial optimization problem. Graph partitioning algorithms are discussed that give good but not necessarily optimum solutions. These algorithms include local search methods recursive spectral bisection, and more general purpose methods such as simulated annealing. It is shown that a general procedure enables to combine simulated annealing with Kernighan-Lin. The resulting algorithm is both very fast and extremely effective. (authors) 23 refs., 3 figs., 1 tab

  20. Electrostatic PIC with adaptive Cartesian mesh

    CERN Document Server

    Kolobov, Vladimir I

    2016-01-01

    We describe an initial implementation of an electrostatic Particle-in-Cell (ES-PIC) module with adaptive Cartesian mesh in our Unified Flow Solver framework. Challenges of PIC method with cell-based adaptive mesh refinement (AMR) are related to a decrease of the particle-per-cell number in the refined cells with a corresponding increase of the numerical noise. The developed ES-PIC solver is validated for capacitively coupled plasma, its AMR capabilities are demonstrated for simulations of streamer development during high-pressure gas breakdown. It is shown that cell-based AMR provides a convenient particle management algorithm for exponential multiplications of electrons and ions in the ionization events.

  1. Adaptive upscaling with the dual mesh method

    Energy Technology Data Exchange (ETDEWEB)

    Guerillot, D.; Verdiere, S.

    1997-08-01

    The objective of this paper is to demonstrate that upscaling should be calculated during the flow simulation instead of trying to enhance the a priori upscaling methods. Hence, counter-examples are given to motivate our approach, the so-called Dual Mesh Method. The main steps of this numerical algorithm are recalled. Applications illustrate the necessity to consider different average relative permeability values depending on the direction in space. Moreover, these values could be different for the same average saturation. This proves that an a priori upscaling cannot be the answer even in homogeneous cases because of the {open_quotes}dynamical heterogeneity{close_quotes} created by the saturation profile. Other examples show the efficiency of the Dual Mesh Method applied to heterogeneous medium and to an actual field case in South America.

  2. Meshed split skin graft for extensive vitiligo

    Directory of Open Access Journals (Sweden)

    Srinivas C

    2004-05-01

    Full Text Available A 30 year old female presented with generalized stable vitiligo involving large areas of the body. Since large areas were to be treated it was decided to do meshed split skin graft. A phototoxic blister over recipient site was induced by applying 8 MOP solution followed by exposure to UVA. The split skin graft was harvested from donor area by Padgett dermatome which was meshed by an ampligreffe to increase the size of the graft by 4 times. Significant pigmentation of the depigmented skin was seen after 5 months. This procedure helps to cover large recipient areas, when pigmented donor skin is limited with minimal risk of scarring. Phototoxic blister enables easy separation of epidermis thus saving time required for dermabrasion from recipient site.

  3. Gamra: Simple meshing for complex earthquakes

    Science.gov (United States)

    Landry, Walter; Barbot, Sylvain

    2016-05-01

    The static offsets caused by earthquakes are well described by elastostatic models with a discontinuity in the displacement along the fault. A traditional approach to model this discontinuity is to align the numerical mesh with the fault and solve the equations using finite elements. However, this distorted mesh can be difficult to generate and update. We present a new numerical method, inspired by the Immersed Interface Method (Leveque and Li, 1994), for solving the elastostatic equations with embedded discontinuities. This method has been carefully designed so that it can be used on parallel machines on an adapted finite difference grid. We have implemented this method in Gamra, a new code for earth modeling. We demonstrate the correctness of the method with analytic tests, and we demonstrate its practical performance by solving a realistic earthquake model to extremely high precision.

  4. Nondispersive optical activity of meshed helical metamaterials.

    Science.gov (United States)

    Park, Hyun Sung; Kim, Teun-Teun; Kim, Hyeon-Don; Kim, Kyungjin; Min, Bumki

    2014-11-17

    Extreme optical properties can be realized by the strong resonant response of metamaterials consisting of subwavelength-scale metallic resonators. However, highly dispersive optical properties resulting from strong resonances have impeded the broadband operation required for frequency-independent optical components or devices. Here we demonstrate that strong, flat broadband optical activity with high transparency can be obtained with meshed helical metamaterials in which metallic helical structures are networked and arranged to have fourfold rotational symmetry around the propagation axis. This nondispersive optical activity originates from the Drude-like response as well as the fourfold rotational symmetry of the meshed helical metamaterials. The theoretical concept is validated in a microwave experiment in which flat broadband optical activity with a designed magnitude of 45° per layer of metamaterial is measured. The broadband capabilities of chiral metamaterials may provide opportunities in the design of various broadband optical systems and applications.

  5. Electrostatic PIC with adaptive Cartesian mesh

    Science.gov (United States)

    Kolobov, Vladimir; Arslanbekov, Robert

    2016-05-01

    We describe an initial implementation of an electrostatic Particle-in-Cell (ES-PIC) module with adaptive Cartesian mesh in our Unified Flow Solver framework. Challenges of PIC method with cell-based adaptive mesh refinement (AMR) are related to a decrease of the particle-per-cell number in the refined cells with a corresponding increase of the numerical noise. The developed ES-PIC solver is validated for capacitively coupled plasma, its AMR capabilities are demonstrated for simulations of streamer development during high-pressure gas breakdown. It is shown that cell-based AMR provides a convenient particle management algorithm for exponential multiplications of electrons and ions in the ionization events.

  6. Motion Editing for Time-Varying Mesh

    Science.gov (United States)

    Xu, Jianfeng; Yamasaki, Toshihiko; Aizawa, Kiyoharu

    2008-12-01

    Recently, time-varying mesh (TVM), which is composed of a sequence of mesh models, has received considerable interest due to its new and attractive functions such as free viewpoint and interactivity. TVM captures the dynamic scene of the real world from multiple synchronized cameras. However, it is expensive and time consuming to generate a TVM sequence. In this paper, an editing system is presented to reuse the original data, which reorganizes the motions to obtain a new sequence based on the user requirements. Hierarchical motion structure is observed and parsed in TVM sequences. Then, the representative motions are chosen into a motion database, where a motion graph is constructed to connect those motions with smooth transitions. After the user selects some desired motions from the motion database, the best paths are searched by a modified Dijkstra algorithm to achieve a new sequence. Our experimental results demonstrate that the edited sequences are natural and smooth.

  7. Motion Editing for Time-Varying Mesh

    Directory of Open Access Journals (Sweden)

    Kiyoharu Aizawa

    2008-08-01

    Full Text Available Recently, time-varying mesh (TVM, which is composed of a sequence of mesh models, has received considerable interest due to its new and attractive functions such as free viewpoint and interactivity. TVM captures the dynamic scene of the real world from multiple synchronized cameras. However, it is expensive and time consuming to generate a TVM sequence. In this paper, an editing system is presented to reuse the original data, which reorganizes the motions to obtain a new sequence based on the user requirements. Hierarchical motion structure is observed and parsed in TVM sequences. Then, the representative motions are chosen into a motion database, where a motion graph is constructed to connect those motions with smooth transitions. After the user selects some desired motions from the motion database, the best paths are searched by a modified Dijkstra algorithm to achieve a new sequence. Our experimental results demonstrate that the edited sequences are natural and smooth.

  8. Gamra: Simple Meshes for Complex Earthquakes

    CERN Document Server

    Landry, Walter

    2016-01-01

    The static offsets caused by earthquakes are well described by elastostatic models with a discontinuity in the displacement along the fault. A traditional approach to model this discontinuity is to align the numerical mesh with the fault and solve the equations using finite elements. However, this distorted mesh can be difficult to generate and update. We present a new numerical method, inspired by the Immersed Interface Method, for solving the elastostatic equations with embedded discontinuities. This method has been carefully designed so that it can be used on parallel machines on an adapted finite difference grid. We have implemented this method in Gamra, a new code for earth modelling. We demonstrate the correctness of the method with analytic tests, and we demonstrate its practical performance by solving a realistic earthquake model to extremely high precision.

  9. Congenital neck masses: embryological and anatomical perspectives

    Directory of Open Access Journals (Sweden)

    Zahida Rasool

    2013-08-01

    Full Text Available Neck masses are a common problem in paediatric age group. They tend to occur frequently and pose a diagnostic dilemma to the ENT surgeons. Although the midline and lateral neck masses differ considerably in their texture and presentation but the embryological perspective of these masses is not mostly understood along with the fundamental anatomical knowledge. The article tries to correlate the embryological, anatomical and clinical perspectives for the same. [Int J Res Med Sci 2013; 1(4.000: 329-332

  10. Anatomical basis for Wilms tumor surgery

    Directory of Open Access Journals (Sweden)

    Trobs R

    2009-01-01

    Full Text Available Wilms tumor surgery requires meticulous planning and sophisticated surgical technique. Detailed anatomical knowledge can facilitate the uneventful performance of tumor nephrectomy and cannot be replaced by advanced and sophisticated imaging techniques. We can define two main goals for surgery: (1 exact staging as well as (2 safe and complete resection of tumor without spillage. This review aims to review the anatomical basis for Wilms tumor surgery. It focuses on the surgical anatomy of retroperitoneal space, aorta, vena cava and their large branches with lymphatics. Types and management of vascular injuries are discussed.

  11. TPM: Tree-Particle-Mesh code

    Science.gov (United States)

    Bode, Paul

    2013-05-01

    TPM carries out collisionless (dark matter) cosmological N-body simulations, evolving a system of N particles as they move under their mutual gravitational interaction. It combines aspects of both Tree and Particle-Mesh algorithms. After the global PM forces are calculated, spatially distinct regions above a given density contrast are located; the tree code calculates the gravitational interactions inside these denser objects at higher spatial and temporal resolution. The code is parallel and uses MPI for message passing.

  12. Mini-mesh repair for femoral hernia

    OpenAIRE

    Hakan Kulacoglu

    2014-01-01

    INTRODUCTION: Femoral hernia consists only 4% of all primary groin hernias. It is described as “the Bête Noire of Hernias” because of its nature and anatomy which is difficult to understand for the surgeons and tendency to recurrence. Although there is some large series of femoral hernia in the literature, few studies prospectively comparing repair techniques especially for this type of hernia has been published. A new technique named mini-mesh repair is described here. PRESENTATION OF CAS...

  13. Gradient Domain Mesh Deformation - A Survey

    Institute of Scientific and Technical Information of China (English)

    Wei-Wei Xu; Kun Zhou

    2009-01-01

    This survey reviews the recent development of gradient domain mesh deformation method. Different to other deformation methods, the gradient domain deformation method is a surface-based, variational optimization method. It directly encodes the geometric details in differential coordinates, which are also called Laplacian coordinates in literature. By preserving the Laplacian coordinates, the mesh details can be well preserved during deformation. Due to the locality of the Laplacian coordinates, the variational optimization problem can be casted into a sparse linear system. Fast sparse linear solver can be adopted to generate deformation result interactively, or even in real-time. The nonlinear nature of gradient domain mesh deformation leads to the development of two categories of deformation methods: linearization methods and nonlinear optimization methods. Basically, the linearization methods only need to solve the linear least-squares system once. They are fast, easy to understand and control, while the deformation result might be suboptimal. Nonlinear optimization methods can reach optimal solution of deformation energy function by iterative updating. Since the computation of nonlinear methods is expensive, reduced deformable models should be adopted to achieve interactive performance. The nonlinear optimization methods avoid the user burden to input transformation at deformation handles, and they can be extended to incorporate various nonlinear constraints, like volume constraint, skeleton constraint, and so on. We review representative methods and related approaches of each category comparatively and hope to help the user understand the motivation behind the algorithms. Finally, we discuss the relation between physical simulation and gradient domain mesh deformation to reveal why it can achieve physically plausible deformation result.

  14. Titanium mesh cages (TMC) in spine surgery

    OpenAIRE

    Grob, Dieter; Daehn, Sylvia; Mannion, Anne F.

    2004-01-01

    The introduction of the titanium mesh cage (TMC) in spinal surgery has opened up a variety of applications that are realizable as a result of the versatility of the implant. Differing applications of TMCs in the whole spine are described in a series of 150 patients. Replacement and reinforcement of the anterior column represent the classic use of cylindrical TMCs. The TMC as a multisegmental concave support in kyphotic deformities and as a posterior interlaminar spacer or lamina replacement a...

  15. Airbag Mapped Mesh Auto-Flattening Method

    Institute of Scientific and Technical Information of China (English)

    ZHANG Jinhuan; MA Chunsheng; BAI Yuanli; HUANG Shilin

    2005-01-01

    Current software cannot easily model an airbag to be flattened without wrinkles. This paper improves the modeling efficiency using the initial metric method to design a mapped mesh auto-flattening algorithm. The element geometric transformation matrix was obtained using the theory of computer graphics. The algorithm proved to be practical for modeling a passenger-side airbag model. The efficiency and precision of modeling airbags are greatly improved by this method.

  16. Wireless experiments on a Motorola mesh testbed.

    Energy Technology Data Exchange (ETDEWEB)

    Riblett, Loren E., Jr.; Wiseman, James M.; Witzke, Edward L.

    2010-06-01

    Motomesh is a Motorola product that performs mesh networking at both the client and access point levels and allows broadband mobile data connections with or between clients moving at vehicular speeds. Sandia National aboratories has extensive experience with this product and its predecessors in infrastructure-less mobile environments. This report documents experiments, which characterize certain aspects of how the Motomesh network performs when obile units are added to a fixed network infrastructure.

  17. Adaptive mesh refinement and adjoint methods in geophysics simulations

    Science.gov (United States)

    Burstedde, Carsten

    2013-04-01

    It is an ongoing challenge to increase the resolution that can be achieved by numerical geophysics simulations. This applies to considering sub-kilometer mesh spacings in global-scale mantle convection simulations as well as to using frequencies up to 1 Hz in seismic wave propagation simulations. One central issue is the numerical cost, since for three-dimensional space discretizations, possibly combined with time stepping schemes, a doubling of resolution can lead to an increase in storage requirements and run time by factors between 8 and 16. A related challenge lies in the fact that an increase in resolution also increases the dimensionality of the model space that is needed to fully parametrize the physical properties of the simulated object (a.k.a. earth). Systems that exhibit a multiscale structure in space are candidates for employing adaptive mesh refinement, which varies the resolution locally. An example that we found well suited is the mantle, where plate boundaries and fault zones require a resolution on the km scale, while deeper area can be treated with 50 or 100 km mesh spacings. This approach effectively reduces the number of computational variables by several orders of magnitude. While in this case it is possible to derive the local adaptation pattern from known physical parameters, it is often unclear what are the most suitable criteria for adaptation. We will present the goal-oriented error estimation procedure, where such criteria are derived from an objective functional that represents the observables to be computed most accurately. Even though this approach is well studied, it is rarely used in the geophysics community. A related strategy to make finer resolution manageable is to design methods that automate the inference of model parameters. Tweaking more than a handful of numbers and judging the quality of the simulation by adhoc comparisons to known facts and observations is a tedious task and fundamentally limited by the turnaround times

  18. Algorithms to automatically quantify the geometric similarity of anatomical surfaces

    CERN Document Server

    Boyer, D; Clair, E St; Puente, J; Funkhouser, T; Patel, B; Jernvall, J; Daubechies, I

    2011-01-01

    We describe new approaches for distances between pairs of 2-dimensional surfaces (embedded in 3-dimensional space) that use local structures and global information contained in inter-structure geometric relationships. We present algorithms to automatically determine these distances as well as geometric correspondences. This is motivated by the aspiration of students of natural science to understand the continuity of form that unites the diversity of life. At present, scientists using physical traits to study evolutionary relationships among living and extinct animals analyze data extracted from carefully defined anatomical correspondence points (landmarks). Identifying and recording these landmarks is time consuming and can be done accurately only by trained morphologists. This renders these studies inaccessible to non-morphologists, and causes phenomics to lag behind genomics in elucidating evolutionary patterns. Unlike other algorithms presented for morphological correspondences our approach does not requir...

  19. Mesh deployable antenna mechanics testing method

    Science.gov (United States)

    Jiang, Li

    Rapid development in spatial technologies and continuous expansion of astronautics applications require stricter and stricter standards in spatial structure. Deployable space structure as a newly invented structural form is being extensively adopted because of its characteristic (i.e. deployability). Deployable mesh reflector antenna is a kind of common deployable antennas. Its reflector consists in a kind of metal mesh. Its electrical properties are highly dependent on its mechanics parameters (including surface accuracy, angle, and position). Therefore, these mechanics parameters have to be calibrated. This paper presents a mesh antenna mechanics testing method that employs both an electronic theodolite and a laser tracker. The laser tracker is firstly used to measure the shape of radial rib deployable antenna. The measurement data are then fitted to a paraboloid by means of error compensation. Accordingly, the focus and the focal axis of the paraboloid are obtained. The following step is to synchronize the coordinate systems of the electronic theodolite and the measured antenna. Finally, in a microwave anechoic chamber environment, the electromechanical axis is calibrated. Testing results verify the effectiveness of the presented method.

  20. Invertible authentication for 3D meshes

    Science.gov (United States)

    Dittmann, Jana; Benedens, Oliver

    2003-06-01

    Digital watermarking has become an accepted technology for enabling multimedia protection schemes. Based on the introduced media independent protocol schemes for invertible data authentication in references 2, 4 and 5 we discuss the design of a new 3D invertible labeling technique to ensure and require high data integrity. We combine digital signature schemes and digital watermarking to provide a public verifiable integrity. Furthermore the protocol steps in the other papers to ensure that the original data can only be reproduced with a secret key is adopted for 3D meshes. The goal is to show how the existing protocol can be used for 3D meshes to provide solutions for authentication watermarking. In our design concept and evaluation we see that due to the nature of 3D meshes the invertible function are different from the image and audio concepts to achieve invertibility to guaranty reversibility of the original. Therefore we introduce a concept for distortion free invertibility and a concept for adjustable minimum distortion invertibility.

  1. Mesh Learning for Classifying Cognitive Processes

    CERN Document Server

    Ozay, Mete; Öztekin, Uygar; Vural, Fatos T Yarman

    2012-01-01

    The major goal of this study is to model the encoding and retrieval operations of the brain during memory processing, using statistical learning tools. The suggested method assumes that the memory encoding and retrieval processes can be represented by a supervised learning system, which is trained by the brain data collected from the functional Magnetic Resonance (fMRI) measurements, during the encoding stage. Then, the system outputs the same class labels as that of the fMRI data collected during the retrieval stage. The most challenging problem of modeling such a learning system is the design of the interactions among the voxels to extract the information about the underlying patterns of brain activity. In this study, we suggest a new method called Mesh Learning, which represents each voxel by a mesh of voxels in a neighborhood system. The nodes of the mesh are a set of neighboring voxels, whereas the arc weights are estimated by a linear regression model. The estimated arc weights are used to form Local Re...

  2. Numerical Investigation of Corrugated Wire Mesh Laminate

    Directory of Open Access Journals (Sweden)

    Jeongho Choi

    2013-01-01

    Full Text Available The aim of this work is to develop a numerical model of Corrugated Wire Mesh Laminate (CWML capturing all its complexities such as nonlinear material properties, nonlinear geometry and large deformation behaviour, and frictional behaviour. Development of such a model will facilitate numerical simulation of the mechanical behaviour of the wire mesh structure under various types of loading as well as the variation of the CWML configuration parameters to tailor its mechanical properties to suit the intended application. Starting with a single strand truss model consisting of four waves with a bilinear stress-strain model to represent the plastic behaviour of stainless steel, the finite element model is gradually built up to study single-layer structures with 18 strands of corrugated wire meshes consistency and double- and quadruple-layered laminates with alternating crossply orientations. The compressive behaviour of the CWML model is simulated using contact elements to model friction and is compared to the load-deflection behaviour determined experimentally in uniaxial compression tests. The numerical model of the CWML is then employed to conduct the aim of establishing the upper and lower bounds of stiffness and load capacity achievable by such structures.

  3. Parallel object-oriented adaptive mesh refinement

    Energy Technology Data Exchange (ETDEWEB)

    Balsara, D.; Quinlan, D.J.

    1997-04-01

    In this paper we study adaptive mesh refinement (AMR) for elliptic and hyperbolic systems. We use the Asynchronous Fast Adaptive Composite Grid Method (AFACX), a parallel algorithm based upon the of Fast Adaptive Composite Grid Method (FAC) as a test case of an adaptive elliptic solver. For our hyperbolic system example we use TVD and ENO schemes for solving the Euler and MHD equations. We use the structured grid load balancer MLB as a tool for obtaining a load balanced distribution in a parallel environment. Parallel adaptive mesh refinement poses difficulties in expressing both the basic single grid solver, whether elliptic or hyperbolic, in a fashion that parallelizes seamlessly. It also requires that these basic solvers work together within the adaptive mesh refinement algorithm which uses the single grid solvers as one part of its adaptive solution process. We show that use of AMR++, an object-oriented library within the OVERTURE Framework, simplifies the development of AMR applications. Parallel support is provided and abstracted through the use of the P++ parallel array class.

  4. Data-Parallel Mesh Connected Components Labeling and Analysis

    Energy Technology Data Exchange (ETDEWEB)

    Harrison, Cyrus; Childs, Hank; Gaither, Kelly

    2011-04-10

    We present a data-parallel algorithm for identifying and labeling the connected sub-meshes within a domain-decomposed 3D mesh. The identification task is challenging in a distributed-memory parallel setting because connectivity is transitive and the cells composing each sub-mesh may span many or all processors. Our algorithm employs a multi-stage application of the Union-find algorithm and a spatial partitioning scheme to efficiently merge information across processors and produce a global labeling of connected sub-meshes. Marking each vertex with its corresponding sub-mesh label allows us to isolate mesh features based on topology, enabling new analysis capabilities. We briefly discuss two specific applications of the algorithm and present results from a weak scaling study. We demonstrate the algorithm at concurrency levels up to 2197 cores and analyze meshes containing up to 68 billion cells.

  5. A Triangle Mesh Standardization Method Based on Particle Swarm Optimization.

    Science.gov (United States)

    Wang, Wuli; Duan, Liming; Bai, Yang; Wang, Haoyu; Shao, Hui; Zhong, Siyang

    2016-01-01

    To enhance the triangle quality of a reconstructed triangle mesh, a novel triangle mesh standardization method based on particle swarm optimization (PSO) is proposed. First, each vertex of the mesh and its first order vertices are fitted to a cubic curve surface by using least square method. Additionally, based on the condition that the local fitted surface is the searching region of PSO and the best average quality of the local triangles is the goal, the vertex position of the mesh is regulated. Finally, the threshold of the normal angle between the original vertex and regulated vertex is used to determine whether the vertex needs to be adjusted to preserve the detailed features of the mesh. Compared with existing methods, experimental results show that the proposed method can effectively improve the triangle quality of the mesh while preserving the geometric features and details of the original mesh. PMID:27509129

  6. Anatomic and functional leg-length inequality: A review and recommendation for clinical decision-making. Part I, anatomic leg-length inequality: prevalence, magnitude, effects and clinical significance

    Directory of Open Access Journals (Sweden)

    Knutson Gary A

    2005-07-01

    Full Text Available Abstract Background Leg-length inequality is most often divided into two groups: anatomic and functional. Part I of this review analyses data collected on anatomic leg-length inequality relative to prevalence, magnitude, effects and clinical significance. Part II examines the functional "short leg" including anatomic-functional relationships, and provides an outline for clinical decision-making. Methods Online database – Medline, CINAHL and MANTIS – and library searches for the time frame of 1970–2005 were done using the term "leg-length inequality". Results and Discussion Using data on leg-length inequality obtained by accurate and reliable x-ray methods, the prevalence of anatomic inequality was found to be 90%, the mean magnitude of anatomic inequality was 5.2 mm (SD 4.1. The evidence suggests that, for most people, anatomic leg-length inequality does not appear to be clinically significant until the magnitude reaches ~ 20 mm (~3/4". Conclusion Anatomic leg-length inequality is near universal, but the average magnitude is small and not likely to be clinically significant.

  7. Oral, intestinal, and skin bacteria in ventral hernia mesh implants

    Science.gov (United States)

    Langbach, Odd; Kristoffersen, Anne Karin; Abesha-Belay, Emnet; Enersen, Morten; Røkke, Ola; Olsen, Ingar

    2016-01-01

    Background In ventral hernia surgery, mesh implants are used to reduce recurrence. Infection after mesh implantation can be a problem and rates around 6–10% have been reported. Bacterial colonization of mesh implants in patients without clinical signs of infection has not been thoroughly investigated. Molecular techniques have proven effective in demonstrating bacterial diversity in various environments and are able to identify bacteria on a gene-specific level. Objective The purpose of this study was to detect bacterial biofilm in mesh implants, analyze its bacterial diversity, and look for possible resemblance with bacterial biofilm from the periodontal pocket. Methods Thirty patients referred to our hospital for recurrence after former ventral hernia mesh repair, were examined for periodontitis in advance of new surgical hernia repair. Oral examination included periapical radiographs, periodontal probing, and subgingival plaque collection. A piece of mesh (1×1 cm) from the abdominal wall was harvested during the new surgical hernia repair and analyzed for bacteria by PCR and 16S rRNA gene sequencing. From patients with positive PCR mesh samples, subgingival plaque samples were analyzed with the same techniques. Results A great variety of taxa were detected in 20 (66.7%) mesh samples, including typical oral commensals and periodontopathogens, enterics, and skin bacteria. Mesh and periodontal bacteria were further analyzed for similarity in 16S rRNA gene sequences. In 17 sequences, the level of resemblance between mesh and subgingival bacterial colonization was 98–100% suggesting, but not proving, a transfer of oral bacteria to the mesh. Conclusion The results show great bacterial diversity on mesh implants from the anterior abdominal wall including oral commensals and periodontopathogens. Mesh can be reached by bacteria in several ways including hematogenous spread from an oral site. However, other sites such as gut and skin may also serve as sources for the

  8. Handbook of anatomical models for radiation dosimetry

    CERN Document Server

    Eckerman, Keith F

    2010-01-01

    Covering the history of human model development, this title presents the major anatomical and physical models that have been developed for human body radiation protection, diagnostic imaging, and nuclear medicine therapy. It explores how these models have evolved and the role that modern technologies have played in this development.

  9. HPV Vaccine Effective at Multiple Anatomic Sites

    Science.gov (United States)

    A new study from NCI researchers finds that the HPV vaccine protects young women from infection with high-risk HPV types at the three primary anatomic sites where persistent HPV infections can cause cancer. The multi-site protection also was observed at l

  10. Influences on anatomical knowledge: The complete arguments

    NARCIS (Netherlands)

    Bergman, E.M.; Verheijen, I.W.; Scherpbier, A.J.J.A.; Vleuten, C.P.M. van der; Bruin, A.B. De

    2014-01-01

    Eight factors are claimed to have a negative influence on anatomical knowledge of medical students: (1) teaching by nonmedically qualified teachers, (2) the absence of a core anatomy curriculum, (3) decreased use of dissection as a teaching tool, (4) lack of teaching anatomy in context, (5) integrat

  11. Report of a rare anatomic variant

    DEFF Research Database (Denmark)

    De Brucker, Y; Ilsen, B; Muylaert, C;

    2015-01-01

    We report the CT findings in a case of partial anomalous pulmonary venous return (PAPVR) from the left upper lobe in an adult. PAPVR is an anatomic variant in which one to three pulmonary veins drain into the right atrium or its tributaries, rather than into the left atrium. This results in a lef...

  12. Open Volumetric Mesh-An Efficient Data Structure for Tetrahedral and Hexa-hedral Meshes

    Institute of Scientific and Technical Information of China (English)

    XIAN Chu-hua; LI Gui-qing; GAO Shu-ming

    2013-01-01

    This work introduces a scalable and efficient topological structure for tetrahedral and hexahedral meshes. The design of the data structure aims at maximal flexibility and high performance. It provides a high scalability by using hierarchical representa-tions of topological elements. The proposed data structure is array-based, and it is a compact representation of the half-edge data structure for volume elements and half-face data structure for volumetric meshes. This guarantees constant access time to the neighbors of the topological elements. In addition, an open-source implementation named Open Volumetric Mesh (OVM) of the pro-posed data structure is written in C++using generic programming concepts.

  13. A comparative study of postoperative complications of lightweight mesh and conventional prolene mesh in Lichtenstein hernia repair

    Directory of Open Access Journals (Sweden)

    Gugri Mukthinath

    2016-06-01

    Full Text Available Background: Inguinal hernia repair is the most frequently performed operation in any general surgical unit. The complications of using the mesh has been the rationale to examine the role of mesh in hernia repair in detail and to begin investigating the biocompatibility of different mesh modifications and to challenge old mesh concepts. Therefore the present study is undertaken to compare the lightweight mesh (Ultrapro with conventional prolene mesh in lichtenstein hernia repair. Methods: Thirty one patients with primary unilateral inguinal hernia was subjected either to lightweight mesh Lichtenstein's hernioplasty or standard prolene mesh Lichtenstein's hernioplasty. The patients were followed in the surgical OPD at 1 month, 6 months and 1 year for time taken to return to normal activities, chronic groin pain, foreign body sensation, seroma formation and recurrence. Results: Chronic pain among patients in standard prolene mesh group at 1 month, 6 month, and 1 year follow up was seen in 45.2%, 16% and 3.2% of the patients respectively, in light weight mesh group patients at 1 month, 6 month and 1 year follow up was 32.2%, 6.4% and none at one year respectively. Foreign body sensation in the light weight mesh group is significantly less compared to patients in standard prolene mesh group. Time taken to return to work was relatively shorter among patients in Light weight mesh group. There was no recurrence in both groups. Conclusion: Light weight mesh is an ideal choice in Lichenstein's hernioplasty whenever feasible. [Int J Res Med Sci 2016; 4(6.000: 2130-2134

  14. A Software Package Using a Mesh-grid Method for Simulating HPGe Detector Efficiencies

    Energy Technology Data Exchange (ETDEWEB)

    Kevin Jackman

    2009-10-01

    Traditional ways of determining the absolute full-energy peak efficiencies of high-purity germanium (HPGe) detectors are often time consuming, cost prohibitive, or not feasible. A software package, KMESS (Kevin’s Mesh Efficiency Simulator Software), was developed to assist in predicting these efficiencies. It uses a semiempirical mesh-grid method and works for arbitrary source shapes and counting geometries. The model assumes that any gamma-ray source shape can be treated as a large enough collection of point sources. The code is readily adaptable, has a web-based graphical front-end, and could easily be coupled to a 3D scanner. As will be shown, this software can estimate absolute full-energy peak efficiencies with good accuracy in reasonable computation times. It has applications to the field of gamma-ray spectroscopy because it is a quick and accurate way to assist in performing quantitative analyses using HPGe detectors.

  15. A software package using a mesh-grid method for simulating HPGe detector efficiencies

    Energy Technology Data Exchange (ETDEWEB)

    Gritzo, Russell E [Los Alamos National Laboratory; Jackman, Kevin R [REMOTE SENSING LAB; Biegalski, Steven R [UT AUSTIN

    2009-01-01

    Traditional ways of determining the absolute full-energy peak efficiencies of high-purity germanium (HPGe) detectors are often time consuming, cost prohibitive, or not feasible. A software package, KMESS (Kevin's Mesh Efficiency Simulator Software), was developed to assist in predicting these efficiencies. It uses a semiempirical mesh-grid method and works for arbitrary source shapes and counting geometries. The model assumes that any gamma-ray source shape can be treated as a large enough collection of point sources. The code is readily adaptable, has a web-based graphical front-end. and could easily be coupled to a 3D scanner. As will be shown. this software can estimate absolute full-energy peak efficiencies with good accuracy in reasonable computation times. It has applications to the field of gamma-ray spectroscopy because it is a quick and accurate way to assist in performing quantitative analyses using HPGe detectors.

  16. DISCONTINUITY-CAPTURING FINITE ELEMENT COMPUTATION OF UNSTEADY FLOW WITH ADAPTIVE UNSTRUCTURED MESH

    Institute of Scientific and Technical Information of China (English)

    DONG Genjin; LU Xiyun; ZHUANG Lixian

    2004-01-01

    A discontinuity-capturing scheme of finite element method (FEM) is proposed. The unstructured-grid technique combined with a new type of adaptive mesh approach is developed for both compressible and incompressible unsteady flows, which exhibits the capability of capturing the shock waves and/or thin shear layers accurately in an unsteady viscous flow at high Reynolds number.In particular, a new testing variable, i.e., the disturbed kinetic energy E, is suggested and used in the adaptive mesh computation, which is universally applicable to the capturing of both shock waves and shear layers in the inviscid flow and viscous flow at high Reynolds number. Based on several calculated examples, this approach has been proved to be effective and efficient for the calculations of compressible and incompressible flows.

  17. A first principle particle mesh method for solution SAXS of large bio-molecular systems

    Science.gov (United States)

    Marchi, Massimo

    2016-07-01

    This paper will show that the solution small angle X-ray scattering (SAXS) intensity of globular and membrane proteins can be efficiently and accurately computed from molecular dynamics trajectories using 3D fast Fourier transforms (FFTs). A suitable particle meshing interpolation, similar to the one used in smooth particle mesh Ewald for electrostatic energies and forces, was combined with a uniform solvent density FFT padding scheme to obtain a convenient SAXS spectral resolution. The CPU time scaling of the method, as a function of system size, is highly favorable and its application to large systems such as solutions of solvated membrane proteins is computationally undemanding. Differently from other approaches, all contributions from the simulation cell are included. This means that the subtraction of the buffer from the solution scattering intensity is straightforward and devoid of artifact due to ad hoc definitions of proximal and distal solvent intensity contributions.

  18. A novel approach in formulation of special transition elements: Mesh interface elements

    Science.gov (United States)

    Sarigul, Nesrin

    1991-01-01

    The objective of this research program is in the development of more accurate and efficient methods for solution of singular problems encountered in various branches of mechanics. The research program can be categorized under three levels. The first two levels involve the formulation of a new class of elements called 'mesh interface elements' (MIE) to connect meshes of traditional elements either in three dimensions or in three and two dimensions. The finite element formulations are based on boolean sum and blending operators. MEI are being formulated and tested in this research to account for the steep gradients encountered in aircraft and space structure applications. At present, the heat transfer and structural analysis problems are being formulated from uncoupled theory point of view. The status report: (1) summarizes formulation for heat transfer and structural analysis; (2) explains formulation of MEI; (3) examines computational efficiency; and (4) shows verification examples.

  19. Sustantial Observation on Foot Taeyang Meridian Muscle in Human Lower Limb from a Anatomical Viewpoint

    OpenAIRE

    Kyoung-Sik Park

    2009-01-01

    Objective : This study was carried to identify the anatomical component of FTMM(Foot Taeyang Meridian Muscle) in human lower limb, and further to help the accurate application to real acupuncture. Methods : FTM at the surface of the lower limb was labelled with latex. And cadaver was stripped off to demonstrate muscles, nerves and the others and to display the internal structures of FTMM, being divided into outer, middle, and inner layer. Results : FTMM in human lower limb is composed o...

  20. Adjoint Sensitivity Computations for an Embedded-Boundary Cartesian Mesh Method and CAD Geometry

    Science.gov (United States)

    Nemec, Marian; Aftosmis,Michael J.

    2006-01-01

    Cartesian-mesh methods are perhaps the most promising approach for addressing the issues of flow solution automation for aerodynamic design problems. In these methods, the discretization of the wetted surface is decoupled from that of the volume mesh. This not only enables fast and robust mesh generation for geometry of arbitrary complexity, but also facilitates access to geometry modeling and manipulation using parametric Computer-Aided Design (CAD) tools. Our goal is to combine the automation capabilities of Cartesian methods with an eficient computation of design sensitivities. We address this issue using the adjoint method, where the computational cost of the design sensitivities, or objective function gradients, is esseutially indepeudent of the number of design variables. In previous work, we presented an accurate and efficient algorithm for the solution of the adjoint Euler equations discretized on Cartesian meshes with embedded, cut-cell boundaries. Novel aspects of the algorithm included the computation of surface shape sensitivities for triangulations based on parametric-CAD models and the linearization of the coupling between the surface triangulation and the cut-cells. The objective of the present work is to extend our adjoint formulation to problems involving general shape changes. Central to this development is the computation of volume-mesh sensitivities to obtain a reliable approximation of the objective finction gradient. Motivated by the success of mesh-perturbation schemes commonly used in body-fitted unstructured formulations, we propose an approach based on a local linearization of a mesh-perturbation scheme similar to the spring analogy. This approach circumvents most of the difficulties that arise due to non-smooth changes in the cut-cell layer as the boundary shape evolves and provides a consistent approximation tot he exact gradient of the discretized abjective function. A detailed gradient accurace study is presented to verify our approach

  1. Unbiased sampling and meshing of isosurfaces

    KAUST Repository

    Yan, Dongming

    2014-11-01

    In this paper, we present a new technique to generate unbiased samples on isosurfaces. An isosurface, F(x,y,z) = c , of a function, F , is implicitly defined by trilinear interpolation of background grid points. The key idea of our approach is that of treating the isosurface within a grid cell as a graph (height) function in one of the three coordinate axis directions, restricted to where the slope is not too high, and integrating / sampling from each of these three. We use this unbiased sampling algorithm for applications in Monte Carlo integration, Poisson-disk sampling, and isosurface meshing.

  2. Perspective on the Lagrange-Jacobi mesh

    Science.gov (United States)

    Rampho, Gaotsiwe J.

    2016-07-01

    This paper presents a unified treatment of the kinetic energy matrix elements related to a number of Lagrange functions associated with the Lagrange-Jacobi mesh. The matrix elements can be readily modified for application to problems requiring eigenfunction expansion with Lagrange-Legendre, Lagrange-Chebyshev, Lagrange-Gegenbauer, as well as the Lagrange-Jacobi functions. The applicability of and the accuracy attainable with the matrix elements is demonstrated with the solution to the Schrödinger equation for confining trigonometric Pöschl-Teller potentials. The results obtained are within machine accuracy when appropriate choices of the basis functions are used.

  3. Relativistic MHD with adaptive mesh refinement

    Energy Technology Data Exchange (ETDEWEB)

    Anderson, Matthew [Department of Physics and Astronomy, Louisiana State University, Baton Rouge, LA 70803-4001 (United States); Hirschmann, Eric W [Department of Physics and Astronomy, Brigham Young University, Provo, UT 84602 (United States); Liebling, Steven L [Department of Physics, Long Island University-C W Post Campus, Brookville, NY 11548 (United States); Neilsen, David [Department of Physics and Astronomy, Brigham Young University, Provo, UT 84602 (United States)

    2006-11-22

    This paper presents a new computer code to solve the general relativistic magnetohydrodynamics (GRMHD) equations using distributed parallel adaptive mesh refinement (AMR). The fluid equations are solved using a finite difference convex ENO method (CENO) in 3 + 1 dimensions, and the AMR is Berger-Oliger. Hyperbolic divergence cleaning is used to control the {nabla} . B = 0 constraint. We present results from three flat space tests, and examine the accretion of a fluid onto a Schwarzschild black hole, reproducing the Michel solution. The AMR simulations substantially improve performance while reproducing the resolution equivalent unigrid simulation results. Finally, we discuss strong scaling results for parallel unigrid and AMR runs.

  4. Shadowfax: Moving mesh hydrodynamical integration code

    Science.gov (United States)

    Vandenbroucke, Bert

    2016-05-01

    Shadowfax simulates galaxy evolution. Written in object-oriented modular C++, it evolves a mixture of gas, subject to the laws of hydrodynamics and gravity, and any collisionless fluid only subject to gravity, such as cold dark matter or stars. For the hydrodynamical integration, it makes use of a (co-) moving Lagrangian mesh. The code has a 2D and 3D version, contains utility programs to generate initial conditions and visualize simulation snapshots, and its input/output is compatible with a number of other simulation codes, e.g. Gadget2 (ascl:0003.001) and GIZMO (ascl:1410.003).

  5. Performance of FACTS equipment in Meshed systems

    Energy Technology Data Exchange (ETDEWEB)

    Lerch, E.; Povh, D. [Siemens AG, Berlin (Germany)

    1994-12-31

    Modern power electronic devices such as thyristors and GTOs have made it possible to design controllable network elements, which will play a considerable role in ensuring reliable economic operation of transmission systems as a result of their capability to rapidly change active and reactive power. A number of FACTS elements for high-speed active and reactive power control will be described. Control of power system fluctuations in meshed systems by modulation of active and reactive power will be demonstrated using a number of examples. (author) 7 refs., 11 figs.

  6. Image-Based Geometric Modeling and Mesh Generation

    CERN Document Server

    2013-01-01

    As a new interdisciplinary research area, “image-based geometric modeling and mesh generation” integrates image processing, geometric modeling and mesh generation with finite element method (FEM) to solve problems in computational biomedicine, materials sciences and engineering. It is well known that FEM is currently well-developed and efficient, but mesh generation for complex geometries (e.g., the human body) still takes about 80% of the total analysis time and is the major obstacle to reduce the total computation time. It is mainly because none of the traditional approaches is sufficient to effectively construct finite element meshes for arbitrarily complicated domains, and generally a great deal of manual interaction is involved in mesh generation. This contributed volume, the first for such an interdisciplinary topic, collects the latest research by experts in this area. These papers cover a broad range of topics, including medical imaging, image alignment and segmentation, image-to-mesh conversion,...

  7. Split Bregman's algorithm for three-dimensional mesh segmentation

    Science.gov (United States)

    Habiba, Nabi; Ali, Douik

    2016-05-01

    Variational methods have attracted a lot of attention in the literature, especially for image and mesh segmentation. The methods aim at minimizing the energy to optimize both edge and region detections. We propose a spectral mesh decomposition algorithm to obtain disjoint but meaningful regions of an input mesh. The related optimization problem is nonconvex, and it is very difficult to find a good approximation or global optimum, which represents a challenge in computer vision. We propose an alternating split Bregman algorithm for mesh segmentation, where we extended the image-dedicated model to a three-dimensional (3-D) mesh one. By applying our scheme to 3-D mesh segmentation, we obtain fast solvers that can outperform various conventional ones, such as graph-cut and primal dual methods. A consistent evaluation of the proposed method on various public domain 3-D databases for different metrics is elaborated, and a comparison with the state-of-the-art is performed.

  8. Algebraic turbulence modeling for unstructured and adaptive meshes

    Science.gov (United States)

    Mavriplis, Dimitri J.

    1990-01-01

    An algebraic turbulence model based on the Baldwin-Lomax model, has been implemented for use on unstructured grids. The implementation is based on the use of local background structured turbulence meshes. At each time-step, flow variables are interpolated from the unstructured mesh onto the background structured meshes, the turbulence model is executed on these meshes, and the resulting eddy viscosity values are interpolated back to the unstructured mesh. Modifications to the algebraic model were required to enable the treatment of more complicated flows, such as confluent boundary layers and wakes. The model is used in conjuction with an efficient unstructured multigrid finite-element Navier-Stokes solver in order to compute compressible turbulent flows on fully unstructured meshes. Solutions about single and multiple element airfoils are obtained and compared with experimental data.

  9. Investigation of Mesh Choosing Parameters in Screen Printing System

    Directory of Open Access Journals (Sweden)

    Ahmet AKGÜL

    2012-05-01

    Full Text Available The mesh, which is made by weaving of natural silk, plastic, or metal fibers, is basic material for screen-printing. Image is created on stretched on a frame in screen-printing. Mesh should be selected correctly for a high quality printing. Therefore, substrates, types of print job and mesh parameters have importance. Need to know more about to mesh, yarn type, yarn thickness, frequency of weaving, stretching tension, the kind of weaving, etc. In this study, for a high quality screen-printing, mesh variables examined in detail and optimum conditions indicated, with the aim of increase productivity, minimize to losses time, material and labor. As a result, this information’s for obtaining a high quality printing with screen-printing system have importance as a guide. Also resolution of the image, amount of print run and viscosity of the printing ink, factors affecting the selection of mesh.

  10. The Superconvergence Phenomenon and Proof of the MAC Scheme for the Stokes Equations on Non-uniform Rectangular Meshes

    KAUST Repository

    Li, Jichun

    2014-12-02

    For decades, the widely used finite difference method on staggered grids, also known as the marker and cell (MAC) method, has been one of the simplest and most effective numerical schemes for solving the Stokes equations and Navier–Stokes equations. Its superconvergence on uniform meshes has been observed by Nicolaides (SIAM J Numer Anal 29(6):1579–1591, 1992), but the rigorous proof is never given. Its behavior on non-uniform grids is not well studied, since most publications only consider uniform grids. In this work, we develop the MAC scheme on non-uniform rectangular meshes, and for the first time we theoretically prove that the superconvergence phenomenon (i.e., second order convergence in the (Formula presented.) norm for both velocity and pressure) holds true for the MAC method on non-uniform rectangular meshes. With a careful and accurate analysis of various sources of errors, we observe that even though the local truncation errors are only first order in terms of mesh size, the global errors after summation are second order due to the amazing cancellation of local errors. This observation leads to the elegant superconvergence analysis even with non-uniform meshes. Numerical results are given to verify our theoretical analysis.

  11. MeSH Up: Effective MeSH text classification for improved document retrieval

    NARCIS (Netherlands)

    Trieschnigg, D.; Pezik, P.; Lee, V.; Jong, F.de; Kraaij, W.; Rebholz-Schuhmann, D.

    2009-01-01

    Motivation: Controlled vocabularies such as the Medical Subject Headings (MeSH) thesaurus and the Gene Ontology (GO) provide an efficient way of accessing and organizing biomedical information by reducing the ambiguity inherent to free-text data. Different methods of automating the assignment of MeS

  12. MeSH Up: effective MeSH text classification for improved document retrieval

    NARCIS (Netherlands)

    Trieschnigg, Dolf; Pezik, Piotr; Lee, Vivian; Jong, de Franciska; Kraaij, Wessel; Rebholz-Schuhmann, Dietrich

    2009-01-01

    Motivation: Controlled vocabularies such as the Medical Subject Headings (MeSH) thesaurus and the Gene Ontology (GO) provide an efficient way of accessing and organizing biomedical information by reducing the ambiguity inherent to free-text data. Different methods of automating the assignment of MeS

  13. Dynamic Mesh Adaptation for Front Evolution Using Discontinuous Galerkin Based Weighted Condition Number Mesh Relaxation

    Energy Technology Data Exchange (ETDEWEB)

    Greene, Patrick T. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Schofield, Samuel P. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Nourgaliev, Robert [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)

    2016-06-21

    A new mesh smoothing method designed to cluster mesh cells near a dynamically evolving interface is presented. The method is based on weighted condition number mesh relaxation with the weight function being computed from a level set representation of the interface. The weight function is expressed as a Taylor series based discontinuous Galerkin projection, which makes the computation of the derivatives of the weight function needed during the condition number optimization process a trivial matter. For cases when a level set is not available, a fast method for generating a low-order level set from discrete cell-centered elds, such as a volume fraction or index function, is provided. Results show that the low-order level set works equally well for the weight function as the actual level set. Meshes generated for a number of interface geometries are presented, including cases with multiple level sets. Dynamic cases for moving interfaces are presented to demonstrate the method's potential usefulness to arbitrary Lagrangian Eulerian (ALE) methods.

  14. Sending policies in dynamic wireless mesh using network coding

    DEFF Research Database (Denmark)

    Pandi, Sreekrishna; Fitzek, Frank; Pihl, Jeppe;

    2015-01-01

    This paper demonstrates the quick prototyping capabilities of the Python-Kodo library for network coding based performance evaluation and investigates the problem of data redundancy in a network coded wireless mesh with opportunistic overhearing. By means of several wireless meshed architectures ...... of appropriate relays. Finally, various sending policies that can be employed by the nodes in order to improve the overall transmission efficiency in a dynamic wireless mesh network are discussed and their performance is analysed on the constructed simulation setup....

  15. Mesh Plug Repair of Inguinal Hernia; Single Surgeon Experience

    OpenAIRE

    Ahmet Serdar Karaca

    2013-01-01

    Aim: Mesh repair of inguinal hernia repairs are shown to be an effective and reliable method. In this study, a single surgeon%u2019s experience with plug-mesh method performs inguinal hernia repair have been reported. Material and Method: 587 patients with plug-mesh repair of inguinal hernia, preoperative age, body / mass index, comorbid disease were recorded in terms of form. All of the patients during the preoperative and postoperative hernia classification of information, duration of oper...

  16. Hexahedral mesh generation via the dual arrangement of surfaces

    Energy Technology Data Exchange (ETDEWEB)

    Mitchell, S.A.; Tautges, T.J. [Sandia National Labs., Albuquerque, NM (United States)

    1997-12-31

    Given a general three-dimensional geometry with a prescribed quadrilateral surface mesh, the authors consider the problem of constructing a hexahedral mesh of the geometry whose boundary is exactly the prescribed surface mesh. Due to the specialized topology of hexahedra, this problem is more difficult than the analogous one for tetrahedra. Folklore has maintained that a surface mesh must have a constrained structure in order for there to exist a compatible hexahedral mesh. However, they have proof that a surface mesh need only satisfy mild parity conditions, depending on the topology of the three-dimensional geometry, for there to exist a compatible hexahedral mesh. The proof is based on the realization that a hexahedral mesh is dual to an arrangement of surfaces, and the quadrilateral surface mesh is dual to the arrangement of curves bounding these surfaces. The proof is constructive and they are currently developing an algorithm called Whisker Weaving (WW) that mirrors the proof steps. Given the bounding curves, WW builds the topological structure of an arrangement of surfaces having those curves as its boundary. WW progresses in an advancing front manner. Certain local rules are applied to avoid structures that lead to poor mesh quality. Also, after the arrangement is constructed, additional surfaces are inserted to separate features, so e.g., no two hexahedra share more than one quadrilateral face. The algorithm has generated meshes for certain non-trivial problems, but is currently unreliable. The authors are exploring strategies for consistently selecting which portion of the surface arrangement to advance based on the existence proof. This should lead us to a robust algorithm for arbitrary geometries and surface meshes.

  17. AUTOMATIC MESH GENERATION OF 3-D GEOMETRIC MODELS

    Institute of Scientific and Technical Information of China (English)

    刘剑飞

    2003-01-01

    In this paper the presentation of the ball-packing method is reviewed,and a scheme to generate mesh for complex 3-D geometric models is given,which consists of 4 steps:(1)create nodes in 3-D models by ball-packing method,(2)connect nodes to generate mesh by 3-D Delaunay triangulation,(3)retrieve the boundary of the model after Delaunay triangulation,(4)improve the mesh.

  18. Silhouette smoothing for real-time rendering of mesh surfaces

    OpenAIRE

    Wang, L.; Tu, C.; W. Wang; Meng, X.; Chan, B; Yan, D.

    2008-01-01

    Coarse piecewise linear approximation of surfaces causes undesirable polygonal appearance of silhouettes. We present an efficient method for smoothing the silhouettes of coarse triangle meshes using efficient 3D curve reconstruction and simple local re-meshing. It does not assume the availability of a fine mesh and generates only moderate amount of additional data at run time. Furthermore, polygonal feature edges are also smoothed in a unified framework. Our method is based on a novel interpo...

  19. An Anonymous Authentication and Communication Protocol for Wireless Mesh Networks

    OpenAIRE

    Sen, Jaydip

    2011-01-01

    Wireless mesh networks (WMNs) have emerged as a key technology for next generation wireless broadband networks showing rapid progress and inspiring numerous compelling applications. A WMN comprises of a set of mesh routers (MRs) and mesh clients (MCs), where MRs are connected to the Internet backbone through the Internet gateways (IGWs). The MCs are wireless devices and communicate among themselves over possibly multi-hop paths with or without the involvement of MRs. User privacy and security...

  20. Towards Unstructured Mesh Generation Using the Inverse Poisson Problem

    OpenAIRE

    Bunin, Guy

    2008-01-01

    A novel approach to unstructured quadrilateral mesh generation for planar domains is presented. Away from irregular vertices, the resulting meshes have the properties of nearly conformal grids. The technique is based on a theoretical relation between the present problem, and the inverse Poisson (IP) problem with point sources. An IP algorithm is described, which constructs a point-source distribution, whose sources correspond to the irregular vertices of the mesh. Both the background theory a...

  1. Adaptive Mesh Redistibution Method Based on Godunov's Scheme

    OpenAIRE

    Azarenok, Boris N.; Ivanenko, Sergey A.; Tang, Tao

    2003-01-01

    In this work, a detailed description for an efficent adaptive mesh redistribution algorithm based on the Godunov's scheme is presented. After each mesh iteration a second-order finite-volume flow solver is used to update the flow parameters at the new time level directly without using interpolation. Numerical experiments are perfomed to demonstrate the efficency and robustness of the proposed adaptive mesh algorithm in one and two dimensions.

  2. Multiphase flow of immiscible fluids on unstructured moving meshes

    OpenAIRE

    Misztal, Marek Krzysztof; Erleben, Kenny; Bargteil, Adam; Fursund, Jens; Christensen , Brian Bunch; Bærentzen, Jakob Andreas; Bridson, Robert

    2012-01-01

    In this paper, we present a method for animating multiphase flow of immiscible fluids using unstructured moving meshes. Our underlying discretization is an unstructured tetrahedral mesh, the deformable simplicial complex (DSC), that moves with the flow in a Lagrangian manner. Mesh optimization operations improve element quality and avoid element inversion. In the context of multiphase flow, we guarantee that every element is occupied by a single fluid and, consequently, the interface between ...

  3. Automated quadrilateral mesh generation for digital image structures

    Institute of Scientific and Technical Information of China (English)

    2011-01-01

    With the development of advanced imaging technology, digital images are widely used. This paper proposes an automatic quadrilateral mesh generation algorithm for multi-colour imaged structures. It takes an original arbitrary digital image as an input for automatic quadrilateral mesh generation, this includes removing the noise, extracting and smoothing the boundary geometries between different colours, and automatic all-quad mesh generation with the above boundaries as constraints. An application example is...

  4. ANATOMIC RESEARCH OF SUPERIOR CLUNIAL NERVE TRAUMA

    Institute of Scientific and Technical Information of China (English)

    1999-01-01

    In order to find the mechanism of superior clunial nerve (SCN) trauma, we dissected and revealed SCN from 12 corpses (24 sides). Combining 100 sides of SCN trauma, we inspected the course of SCN, the relation between SCN and it's neighbour tissues with the situation of SCN when being subjected to force. We found that the following special anatomic characteristics and mechanical elements such as the course of SCN, it's turning angles, the bony fibrous tube at the iliac crest, the posterior layer of the lumbodorsal fascia and SCN neighbour adipose tissue, are the causes of external force inducing SCN trauma. The anatomic revealment is the guidance of SCN trauma treatment with edged needle.

  5. Integrating anatomical pathology to the healthcare enterprise.

    Science.gov (United States)

    Daniel-Le Bozec, Christel; Henin, Dominique; Fabiani, Bettina; Bourquard, Karima; Ouagne, David; Degoulet, Patrice; Jaulent, Marie-Christine

    2006-01-01

    For medical decisions, healthcare professionals need that all required information is both correct and easily available. We address the issue of integrating anatomical pathology department to the healthcare enterprise. The pathology workflow from order to report, including specimen process and image acquisition was modeled. Corresponding integration profiles were addressed by expansion of the IHE (Integrating the Healthcare Enterprise) initiative. Implementation using respectively DICOM Structured Report (SR) and DICOM Slide-Coordinate Microscopy (SM) was tested. The two main integration profiles--pathology general workflow and pathology image workflow--rely on 13 transactions based on HL7 or DICOM standard. We propose a model of the case in anatomical pathology and of other information entities (orders, image folders and reports) and real-world objects (specimen, tissue samples, slides, etc). Cases representation in XML schemas, based on DICOM specification, allows producing DICOM image files and reports to be stored into a PACS (Picture Archiving and Communication System. PMID:17108550

  6. ACCESSORY SPLEEN: A CLINICALLY RELEVANT ANATOMIC ANOMALY

    OpenAIRE

    Prachi Saffar; Amit Kumar; Ankur

    2016-01-01

    The purpose of our study is to emphasize on the clinical relevance of the presence of accessory spleen. It is not only a well-documented anatomic anomaly, it holds special significance in the differential diagnosis of intra-abdominal tumours and lymphadenopathy. MATERIALS AND METHODS Thirty male cadavers from North Indian population above the age of 60 yrs. were dissected in the Anatomy Department of FMHS, SGT University, Gurgaon, over a period of 5 yrs. (Sep 2010-Aug 2015) and presence...

  7. Microstructure and Anatomical Characteristics of Daemonorops margaritae

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    Daemonorops margaritae is among the most important commercial rattan in South China. Its microstructure and basic anatomical characteristics as well as variation were investigated. Results show that: 1)The variation along the height is small, while the variation along the radial direction is significant; 2) The fibre length, fibre ratio and distribution density of the vascular bundles in the cross section decrease from cortex to core, while the fibre width, vessel element length and width, parenchyma ratio,...

  8. Pure endoscopic endonasal odontoidectomy: anatomical study

    OpenAIRE

    Messina, Andrea; Bruno, Maria Carmela; Decq, Philippe; Coste, Andre; Cavallo, Luigi Maria; de Divittis, Enrico; Cappabianca, Paolo; Tschabitscher, Manfred

    2007-01-01

    Different disorders may produce irreducible atlanto-axial dislocation with compression of the ventral spinal cord. Among the surgical approaches available for a such condition, the transoral resection of the odontoid process is the most often used. The aim of this anatomical study is to demonstrate the possibility of an anterior cervico-medullary decompression through an endoscopic endonasal approach. Three fresh cadaver heads were used. A modified endonasal endoscopic approach was made in al...

  9. Quantifying anatomical shape variations in neurological disorders.

    Science.gov (United States)

    Singh, Nikhil; Fletcher, P Thomas; Preston, J Samuel; King, Richard D; Marron, J S; Weiner, Michael W; Joshi, Sarang

    2014-04-01

    We develop a multivariate analysis of brain anatomy to identify the relevant shape deformation patterns and quantify the shape changes that explain corresponding variations in clinical neuropsychological measures. We use kernel Partial Least Squares (PLS) and formulate a regression model in the tangent space of the manifold of diffeomorphisms characterized by deformation momenta. The scalar deformation momenta completely encode the diffeomorphic changes in anatomical shape. In this model, the clinical measures are the response variables, while the anatomical variability is treated as the independent variable. To better understand the "shape-clinical response" relationship, we also control for demographic confounders, such as age, gender, and years of education in our regression model. We evaluate the proposed methodology on the Alzheimer's Disease Neuroimaging Initiative (ADNI) database using baseline structural MR imaging data and neuropsychological evaluation test scores. We demonstrate the ability of our model to quantify the anatomical deformations in units of clinical response. Our results also demonstrate that the proposed method is generic and generates reliable shape deformations both in terms of the extracted patterns and the amount of shape changes. We found that while the hippocampus and amygdala emerge as mainly responsible for changes in test scores for global measures of dementia and memory function, they are not a determinant factor for executive function. Another critical finding was the appearance of thalamus and putamen as most important regions that relate to executive function. These resulting anatomical regions were consistent with very high confidence irrespective of the size of the population used in the study. This data-driven global analysis of brain anatomy was able to reach similar conclusions as other studies in Alzheimer's disease based on predefined ROIs, together with the identification of other new patterns of deformation. The

  10. Kinetic Solvers with Adaptive Mesh in Phase Space

    OpenAIRE

    Arslanbekov, Robert R; Kolobov, Vladimir I; Frolova, Anna A.

    2013-01-01

    An Adaptive Mesh in Phase Space (AMPS) methodology has been developed for solving multi-dimensional kinetic equations by the discrete velocity method. A Cartesian mesh for both configuration (r) and velocity (v) spaces is produced using a tree of trees data structure. The mesh in r-space is automatically generated around embedded boundaries and dynamically adapted to local solution properties. The mesh in v-space is created on-the-fly for each cell in r-space. Mappings between neighboring v-s...

  11. The mesh controversy [version 1; referees: 2 approved

    Directory of Open Access Journals (Sweden)

    Joshua A. Cohn

    2016-09-01

    Full Text Available Pelvic organ prolapse and stress urinary incontinence are common conditions for which approximately 11% of women will undergo surgical intervention in their lifetime. The use of vaginal mesh for pelvic organ prolapse and stress urinary incontinence rose rapidly in the early 2000s as over 100 mesh products were introduced into the clinical armamentarium with little regulatory oversight for their use. US Food and Drug Administration Public Health Notifications in 2008 and 2011, as well as reclassification of transvaginal mesh for prolapse to class III in early 2016, were a response to debilitating complications associated with transvaginal mesh placement in many women. The midurethral sling has not been subject to the same reclassification and continues to be endorsed as the “gold standard” for surgical management of stress urinary incontinence by subspecialty societies. However, litigators have not differentiated between mesh for prolapse and mesh for incontinence. As such, all mesh, including that placed for stress urinary incontinence, faces continued controversy amidst an uncertain future. In this article, we review the background of the mesh controversy, recent developments, and the anticipated role of mesh in surgery for prolapse and stress urinary incontinence going forward.

  12. Reconfigurable lattice mesh designs for programmable photonic processors.

    Science.gov (United States)

    Pérez, Daniel; Gasulla, Ivana; Capmany, José; Soref, Richard A

    2016-05-30

    We propose and analyse two novel mesh design geometries for the implementation of tunable optical cores in programmable photonic processors. These geometries are the hexagonal and the triangular lattice. They are compared here to a previously proposed square mesh topology in terms of a series of figures of merit that account for metrics that are relevant to on-chip integration of the mesh. We find that that the hexagonal mesh is the most suitable option of the three considered for the implementation of the reconfigurable optical core in the programmable processor. PMID:27410130

  13. An Evaluation Method for Distortion Energy Parameterization of Triangular Meshes

    Institute of Scientific and Technical Information of China (English)

    SHI Jing; ZHAO Xiu-yang; ZHANG Cai-ming; YANG Bo

    2013-01-01

    Parameterization of triangle meshes is a fundamental problem for texture mapping, surface fitting, surface reconstruction, and mesh editing. The deformation of triangular meshes caused by the parameterized process is the measurement of parameterization. Traditional standard method has its limitation when evaluating mixture distortion energy parameterizations. Thus an evaluation method bases on distortion energy parameterization of triangular meshes is introduced for the limitation. The novel method employs an adaptive expression form to the mixture energy, and uses a weight factor to represent distortion energy distribution. By using this method, we can evaluate all kinds of parameterization in a uniform measurement and acquire a more intuitive and clear evaluation.

  14. A New Approach to Fully Automatic Mesh Generation

    Institute of Scientific and Technical Information of China (English)

    闵卫东; 张征明; 等

    1995-01-01

    Automatic mesh generation is one of the most important parts in CIMS (Computer Integrated Manufacturing System).A method based on mesh grading propagation which automatically produces a triangular mesh in a multiply connected planar region is presented in this paper.The method decomposes the planar region into convex subregions,using algorithms which run in linear time.For every subregion,an algorithm is used to generate shrinking polygons according to boundary gradings and form delaunay triangulation between two adjacent shrinking polygons,both in linear time.It automatically propagates boundary gradings into the interior of the region and produces satisfactory quasi-uniform mesh.

  15. Feature-Preserving Mesh Denoising via Anisotropic Surface Fitting

    Institute of Scientific and Technical Information of China (English)

    Jun Wang; Zeyun Yu

    2012-01-01

    We propose in this paper a robust surface mesh denoising method that can effectively remove mesh noise while faithfully preserving sharp features.This method utilizes surface fitting and projection techniques.Sharp features are preserved in the surface fitting algorithm by considering an anisotropic neighborhood of cach vertex detected by the normal-weighted distance.In addition,to handle the mesh with a high level of noise,we perform a pre-filtering of surface normals prior to the neighborhood searching.A number of experimental results and comparisons demonstrate the excellent performance of our method in preserving important surface geometries while filtering mesh noise.

  16. SALOME PLATFORM and TetGen for Polyhedral Mesh Generation

    Energy Technology Data Exchange (ETDEWEB)

    Lee, Sang Yong; Park, Chan Eok; Kim, Shin Whan [KEPCO E and C Company, Inc., Daejeon (Korea, Republic of)

    2014-05-15

    SPACE and CUPID use the unstructured mesh and they also require reliable mesh generation system. The combination of CAD system and mesh generation system is necessary to cope with a large number of cells and the complex fluid system with structural materials inside. In the past, a CAD system Pro/Engineer and mesh generator Pointwise were evaluated for this application. But, the cost of those commercial CAD and mesh generator is sometimes a great burden. Therefore, efforts have been made to set up a mesh generation system with open source programs. The evaluation of the TetGen has been made in focusing the application for the polyhedral mesh generation. In this paper, SALOME will be evaluated for the efforts in conjunction with TetGen. In section 2, review will be made on the CAD and mesh generation capability of SALOME. SALOME and TetGen codes are being integrated to construct robust polyhedral mesh generator. Edge removal on the flat surface and vertex reattachment to the solid are two challenging tasks. It is worthwhile to point out that the Python script capability of the SALOME should be fully utilized for the future investigation.

  17. STL Triangular Mesh Generation Based on SAT Model

    Directory of Open Access Journals (Sweden)

    Yuwei Zhang

    2013-06-01

    Full Text Available Mesh generation is a fundamental technique in multiple domains. In this study, a STL triangular mesh generation method based on SAT model is proposed. Two novel triangulation methods, the constrained Delaunay algorithm and the grid subtraction algorithm, are employed on the multi-loop planer regions and the curved surfaces respectively. For the use of node adjustment, the mesh nodes on the surface boundary are strictly matched, with no cracks created on the joint of model surfaces. Experiments show that the proposed solution works effectively and high quality of the mesh model is achieved.

  18. Fully implicit adaptive mesh refinement MHD algorithm

    Science.gov (United States)

    Philip, Bobby

    2005-10-01

    In the macroscopic simulation of plasmas, the numerical modeler is faced with the challenge of dealing with multiple time and length scales. The former results in stiffness due to the presence of very fast waves. The latter requires one to resolve the localized features that the system develops. Traditional approaches based on explicit time integration techniques and fixed meshes are not suitable for this challenge, as such approaches prevent the modeler from using realistic plasma parameters to keep the computation feasible. We propose here a novel approach, based on implicit methods and structured adaptive mesh refinement (SAMR). Our emphasis is on both accuracy and scalability with the number of degrees of freedom. To our knowledge, a scalable, fully implicit AMR algorithm has not been accomplished before for MHD. As a proof-of-principle, we focus on the reduced resistive MHD model as a basic MHD model paradigm, which is truly multiscale. The approach taken here is to adapt mature physics-based technologyootnotetextL. Chac'on et al., J. Comput. Phys. 178 (1), 15- 36 (2002) to AMR grids, and employ AMR-aware multilevel techniques (such as fast adaptive composite --FAC-- algorithms) for scalability. We will demonstrate that the concept is indeed feasible, featuring optimal scalability under grid refinement. Results of fully-implicit, dynamically-adaptive AMR simulations will be presented on a variety of problems.

  19. Mesh-based parallel code coupling interface

    Energy Technology Data Exchange (ETDEWEB)

    Wolf, K.; Steckel, B. (eds.) [GMD - Forschungszentrum Informationstechnik GmbH, St. Augustin (DE). Inst. fuer Algorithmen und Wissenschaftliches Rechnen (SCAI)

    2001-04-01

    MpCCI (mesh-based parallel code coupling interface) is an interface for multidisciplinary simulations. It provides industrial end-users as well as commercial code-owners with the facility to combine different simulation tools in one environment. Thereby new solutions for multidisciplinary problems will be created. This opens new application dimensions for existent simulation tools. This Book of Abstracts gives a short overview about ongoing activities in industry and research - all presented at the 2{sup nd} MpCCI User Forum in February 2001 at GMD Sankt Augustin. (orig.) [German] MpCCI (mesh-based parallel code coupling interface) definiert eine Schnittstelle fuer multidisziplinaere Simulationsanwendungen. Sowohl industriellen Anwender als auch kommerziellen Softwarehersteller wird mit MpCCI die Moeglichkeit gegeben, Simulationswerkzeuge unterschiedlicher Disziplinen miteinander zu koppeln. Dadurch entstehen neue Loesungen fuer multidisziplinaere Problemstellungen und fuer etablierte Simulationswerkzeuge ergeben sich neue Anwendungsfelder. Dieses Book of Abstracts bietet einen Ueberblick ueber zur Zeit laufende Arbeiten in der Industrie und in der Forschung, praesentiert auf dem 2{sup nd} MpCCI User Forum im Februar 2001 an der GMD Sankt Augustin. (orig.)

  20. Secure Routing in Wireless Mesh Networks

    CERN Document Server

    Sen, Jaydip

    2011-01-01

    Wireless mesh networks (WMNs) have emerged as a promising concept to meet the challenges in next-generation networks such as providing flexible, adaptive, and reconfigurable architecture while offering cost-effective solutions to the service providers. Unlike traditional Wi-Fi networks, with each access point (AP) connected to the wired network, in WMNs only a subset of the APs are required to be connected to the wired network. The APs that are connected to the wired network are called the Internet gateways (IGWs), while the APs that do not have wired connections are called the mesh routers (MRs). The MRs are connected to the IGWs using multi-hop communication. The IGWs provide access to conventional clients and interconnect ad hoc, sensor, cellular, and other networks to the Internet. However, most of the existing routing protocols for WMNs are extensions of protocols originally designed for mobile ad hoc networks (MANETs) and thus they perform sub-optimally. Moreover, most routing protocols for WMNs are des...

  1. Finding regions of interest on toroidal meshes

    Energy Technology Data Exchange (ETDEWEB)

    Wu Kesheng; Sinha, Rishi R; Shoshani, Arie [Lawrence Berkeley National Laboratory, Berkeley, CA (United States); Jones, Chad; Ma, Kwan-Liu [University of California, Davis, CA (United States); Ethier, Stephane [Princeton Plasma Physics Laboratory, Princeton, NJ (United States); Klasky, Scott [Oak Ridge National Laboratory, Oak Ridge, TN (United States); Winslett, Marianne, E-mail: kwu@lbl.gov [University of Illinois, Urbana-Champaign, IL (United States)

    2011-01-15

    Fusion promises to provide clean and safe energy, and a considerable amount of research effort is under way to turn this aspiration into a reality. This work focuses on a building block for analyzing data produced from the simulation of microturbulence in magnetic confinement fusion devices: the task of efficiently extracting regions of interest. Like many other simulations where a large number of data are produced, the careful study of 'interesting' parts of the data is critical to gain understanding. In this paper, we present an efficient approach for finding these regions of interest. Our approach takes full advantage of the underlying mesh structure in magnetic coordinates to produce a compact representation of the mesh points inside the regions and an efficient connected component labeling algorithm for constructing regions from points. This approach scales linearly with the surface area of the regions of interest instead of the volume as shown with both computational complexity analysis and experimental measurements. Furthermore, this new approach is hundreds of times faster than a recently published method based on Cartesian coordinates.

  2. Finding Regions of Interest on Toroidal Meshes

    International Nuclear Information System (INIS)

    Fusion promises to provide clean and safe energy, and a considerable amount of research effort is underway to turn this aspiration intoreality. This work focuses on a building block for analyzing data produced from the simulation of microturbulence in magnetic confinement fusion devices: the task of efficiently extracting regions of interest. Like many other simulations where a large amount of data are produced, the careful study of 'interesting' parts of the data is critical to gain understanding. In this paper, we present an efficient approach for finding these regions of interest. Our approach takes full advantage of the underlying mesh structure in magnetic coordinates to produce a compact representation of the mesh points inside the regions and an efficient connected component labeling algorithm for constructing regions from points. This approach scales linearly with the surface area of the regions of interest instead of the volume as shown with both computational complexity analysis and experimental measurements. Furthermore, this new approach is 100s of times faster than a recently published method based on Cartesian coordinates.

  3. Finding regions of interest on toroidal meshes

    International Nuclear Information System (INIS)

    Fusion promises to provide clean and safe energy, and a considerable amount of research effort is under way to turn this aspiration into a reality. This work focuses on a building block for analyzing data produced from the simulation of microturbulence in magnetic confinement fusion devices: the task of efficiently extracting regions of interest. Like many other simulations where a large number of data are produced, the careful study of 'interesting' parts of the data is critical to gain understanding. In this paper, we present an efficient approach for finding these regions of interest. Our approach takes full advantage of the underlying mesh structure in magnetic coordinates to produce a compact representation of the mesh points inside the regions and an efficient connected component labeling algorithm for constructing regions from points. This approach scales linearly with the surface area of the regions of interest instead of the volume as shown with both computational complexity analysis and experimental measurements. Furthermore, this new approach is hundreds of times faster than a recently published method based on Cartesian coordinates.

  4. Finding Regions of Interest on Toroidal Meshes

    Energy Technology Data Exchange (ETDEWEB)

    Wu, Kesheng; Sinha, Rishi R; Jones, Chad; Ethier, Stephane; Klasky, Scott; Ma, Kwan-Liu; Shoshani, Arie; Winslett, Marianne

    2011-02-09

    Fusion promises to provide clean and safe energy, and a considerable amount of research effort is underway to turn this aspiration intoreality. This work focuses on a building block for analyzing data produced from the simulation of microturbulence in magnetic confinementfusion devices: the task of efficiently extracting regions of interest. Like many other simulations where a large amount of data are produced,the careful study of ``interesting'' parts of the data is critical to gain understanding. In this paper, we present an efficient approach forfinding these regions of interest. Our approach takes full advantage of the underlying mesh structure in magnetic coordinates to produce acompact representation of the mesh points inside the regions and an efficient connected component labeling algorithm for constructingregions from points. This approach scales linearly with the surface area of the regions of interest instead of the volume as shown with bothcomputational complexity analysis and experimental measurements. Furthermore, this new approach is 100s of times faster than a recentlypublished method based on Cartesian coordinates.

  5. ANATOMICAL VARIATIONS IN SINONASAL REGION IN CASES OF SINUS HEADACHE - CT SCAN - PNS STUDY

    Directory of Open Access Journals (Sweden)

    Arun Kumar

    2015-08-01

    Full Text Available BACKGROUND: Sinus headache secondary to Chronic Rhinosinusitis refers to episode of pain over the sinus area of the face and is often associated with nasal congestion, rhinorrhea, facial pressure, lacrimation, nausea and sensory sensitivity. Any small lesions or anatomical variations over lateral wall of nose may giv e rise to sinus headache. CT scan play a vital role in accurate assessment of osteomeatal complex area and anatomical variations at this site. AIM: To study anatomical variations of osteomeatal complex area and deviated septum in cases of chronic sinus hea dache secondary to Chronic Rhinosinusitis. MATERIALS AND METHODS : This study was conducted in Jhalawar Medical College, ENT Department between Sept. 2012 to Dec. 2014. In this study 75 patients withchronic sinus headache was selected who had chronic headac he for more than 3 months duration not responding to medical line of treatment and who were willing to undergo function endoscopic sinus surgery. All patients underwent for CT scan para nasal sinus. RESULT: In this study deviated nasal septum was found in 77.33% patients, apart from that it was observed that 54.66% of the sinus headache cases had two or more anatomical variations and 28% had single anatomical variations, out of them commonest finding is concha bullosa followed by enlarge bulla ethmoid, para doxical middle turbinate, medialiseduncinate process, lateraliseduncinate process, prominent aggar nasi cells, haller cells and onodi cells in decreasing order . CONCLUSION: The study of CT scan PNS conclude that Deviated Nasal Septum and anatomical variati ons at lateral wall of nose causes narrowing of osteomeatal complex area which predisposed patients to sino nasal disease and sinus headache

  6. Exploring brain function from anatomical connectivity

    Directory of Open Access Journals (Sweden)

    Gorka eZamora-López

    2011-06-01

    Full Text Available The intrinsic relationship between the architecture of the brain and the range of sensory and behavioral phenomena it produces is a relevant question in neuroscience. Here, we review recent knowledge gained on the architecture of the anatomical connectivity by means of complex network analysis. It has been found that corticocortical networks display a few prominent characteristics: (i modular organization, (ii abundant alternative processing paths and (iii the presence of highly connected hubs. Additionally, we present a novel classification of cortical areas of the cat according to the role they play in multisensory connectivity. All these properties represent an ideal anatomical substrate supporting rich dynamical behaviors, as-well-as facilitating the capacity of the brain to process sensory information of different modalities segregated and to integrate them towards a comprehensive perception of the real world. The result here exposed are mainly based in anatomical data of cats’ brain, but we show how further observations suggest that, from worms to humans, the nervous system of all animals might share fundamental principles of organization.

  7. Shape analysis of simulated breast anatomical structures

    Science.gov (United States)

    Contijoch, Francisco; Lynch, Jennifer M.; Pokrajac, David D.; Maidment, Andrew D. A.; Bakic, Predrag R.

    2012-03-01

    Recent advances in high-resolution 3D breast imaging, namely, digital breast tomosynthesis and dedicated breast CT, have enabled detailed analysis of the shape and distribution of anatomical structures in the breast. Such analysis is critically important, since the projections of breast anatomical structures make up the parenchymal pattern in clinical images which can mask the existing abnormalities or introduce false alarms; the parenchymal pattern is also correlated with the risk of cancer. As a first step towards the shape analysis of anatomical structures in the breast, we have analyzed an anthropomorphic software breast phantom. The phantom generation is based upon the recursive splitting of the phantom volume using octrees, which produces irregularly shaped tissue compartments, qualitatively mimicking the breast anatomy. The shape analysis was performed by fitting ellipsoids to the simulated tissue compartments. The ellipsoidal semi-axes were calculated by matching the moments of inertia of each individual compartment and of an ellipsoid. The distribution of Dice coefficients, measuring volumetric overlap between the compartment and the corresponding ellipsoid, as well as the distribution of aspect ratios, measuring relative orientations of the ellipsoids, were used to characterize various classes of phantoms with qualitatively distinctive appearance. A comparison between input parameters for phantom generation and the properties of fitted ellipsoids indicated the high level of user control in the design of software breast phantoms. The proposed shape analysis could be extended to clinical breast images, and used to inform the selection of simulation parameters for improved realism.

  8. Anatomical MRI with an atomic magnetometer

    CERN Document Server

    Savukov, I

    2012-01-01

    Ultra-low field (ULF) MRI is a promising method for inexpensive medical imaging with various additional advantages over conventional instruments such as low weight, low power, portability, absence of artifacts from metals, and high contrast. Anatomical ULF MRI has been successfully implemented with SQUIDs, but SQUIDs have the drawback of cryogen requirement. Atomic magnetometers have sensitivity comparable to SQUIDs and can be in principle used for ULF MRI to replace SQUIDs. Unfortunately some problems exist due to the sensitivity of atomic magnetometers to magnetic field and gradients. At low frequency, noise is also substantial and a shielded room is needed for improving sensitivity. In this paper, we show that at 85 kHz, the atomic magnetometer can be used to obtain anatomical images. This is the first demonstration of any use of atomic magnetometers for anatomical MRI. The demonstrated resolution is 1.1x1.4 mm2 in about six minutes of acquisition with SNR of 10. Some applications of the method are discuss...

  9. A Study of Bandwidth Measurement Technique in Wireless Mesh Networks

    Directory of Open Access Journals (Sweden)

    Ajeet Kumar Singh

    2011-09-01

    Full Text Available Wireless mesh networks (WMNs have been proposed as a key technology for next generation wireless networking to provide last-mile broadband access. H ere we have given our observation and study for end to-end bandwidth estimation in WMNs. End-to-end Ban dwidth Estimation is an important metric for network management and monitoring. It can also impr ove the effectiveness of congestion control mechanism, audio/video stream adoration and dynamic overlay. In recent years, many techniques have been developed for bandwidth estimation in the wire d as well as the last-hop wireless networks, but th ey under-perform in WMNs. We investigate attributes th at can affect the bandwidth estimation in WNMs; we found existing techniques do not consider the effec t of attributes like CSMA/CA-based contending traff ic and high interference interference that leads to th e error full estimation. In this paper, we present an active bandwidth measu rement technique called Bandwidth Probe based on th e packet dispersion principle. It measures the steady state bandwidth of the system while considering th e effects of the FIFO cross and CSMA/CA-based contend ing traffic. It is also mitigating the effect of interference. We also show how to achieve the stati onary state behaviour of the system to limit the nu mber of probe packets. On simulation, Bandwidth Probe gi ves a accurate estimation of the available bandwidt h using average convergence time and lower intrusiven ess.

  10. Towards accurate emergency response behavior

    International Nuclear Information System (INIS)

    Nuclear reactor operator emergency response behavior has persisted as a training problem through lack of information. The industry needs an accurate definition of operator behavior in adverse stress conditions, and training methods which will produce the desired behavior. Newly assembled information from fifty years of research into human behavior in both high and low stress provides a more accurate definition of appropriate operator response, and supports training methods which will produce the needed control room behavior. The research indicates that operator response in emergencies is divided into two modes, conditioned behavior and knowledge based behavior. Methods which assure accurate conditioned behavior, and provide for the recovery of knowledge based behavior, are described in detail

  11. Kinematic and dynamic analysis of an anatomically based knee joint.

    Science.gov (United States)

    Lee, Kok-Meng; Guo, Jiajie

    2010-05-01

    This paper presents a knee-joint model to provide a better understanding on the interaction between natural joints and artificial mechanisms for design and control of rehabilitation exoskeletons. The anatomically based knee model relaxes several commonly made assumptions that approximate a human knee as engineering pin-joint in exoskeleton design. Based on published MRI data, we formulate the kinematics of a knee-joint and compare three mathematical approximations; one model bases on two sequential circles rolling a flat plane; and the other two are mathematically differentiable ellipses-based models with and without sliding at the contact. The ellipses-based model taking sliding contact into accounts shows that the rolling-sliding ratio of a knee-joint is not a constant but has an average value consistent with published measurements. This knee-joint kinematics leads to a physically more accurate contact-point trajectory than methods based on multiple circles or lines, and provides a basis to derive a knee-joint kinetic model upon which the effects of a planar exoskeleton mechanism on the internal joint forces and torque during flexion can be numerically investigated. Two different knee-joint kinetic models (pin-joint approximation and anatomically based model) are compared against a condition with no exoskeleton. The leg and exoskeleton form a closed kinematic chain that has a significant effect on the joint forces in the knee. Human knee is more tolerant than pin-joint in negotiating around a singularity but its internal forces increase with the exoskeleton mass-to-length ratio. An oversimplifying pin-joint approximation cannot capture the finite change in the knee forces due to the singularity effect.

  12. MeshVoro: A Three-Dimensional Voronoi Mesh Building Tool for the TOUGH Family of Codes

    Energy Technology Data Exchange (ETDEWEB)

    Freeman, C. M.; Boyle, K. L.; Reagan, M.; Johnson, J.; Rycroft, C.; Moridis, G. J.

    2013-09-30

    Few tools exist for creating and visualizing complex three-dimensional simulation meshes, and these have limitations that restrict their application to particular geometries and circumstances. Mesh generation needs to trend toward ever more general applications. To that end, we have developed MeshVoro, a tool that is based on the Voro (Rycroft 2009) library and is capable of generating complex threedimensional Voronoi tessellation-based (unstructured) meshes for the solution of problems of flow and transport in subsurface geologic media that are addressed by the TOUGH (Pruess et al. 1999) family of codes. MeshVoro, which includes built-in data visualization routines, is a particularly useful tool because it extends the applicability of the TOUGH family of codes by enabling the scientifically robust and relatively easy discretization of systems with challenging 3D geometries. We describe several applications of MeshVoro. We illustrate the ability of the tool to straightforwardly transform a complex geological grid into a simulation mesh that conforms to the specifications of the TOUGH family of codes. We demonstrate how MeshVoro can describe complex system geometries with a relatively small number of grid blocks, and we construct meshes for geometries that would have been practically intractable with a standard Cartesian grid approach. We also discuss the limitations and appropriate applications of this new technology.

  13. Introducing International Journal of Anatomical Variations

    Directory of Open Access Journals (Sweden)

    Tunali S

    2008-06-01

    Full Text Available Welcome to International Journal of Anatomical Variations (IJAV - an annual journal of anatomical variations and clinical anatomy case reports. After having a notable experience for eight years in NEUROANATOMY, we are pleased to introduce you IJAV. We are eventually announcing our new journal after three years of feasibility and background study period. We hope that IJAV will fill in the gap in anatomy journals’ bunch. IJAV is an annual, open access journal having electronic version only. Despite of unavailability of a budget for publishing IJAV, the evaluation of submissions and access to the full text articles is totally free of charge.Our vision for IJAV is to constitute an online compendium for anatomical variations in gross, radiological and surgical anatomy, neuroanatomy and case reports in clinical anatomy. We believe that cases have an important role in clinical anatomy education. In this aspect, we aim to serve as an open source of case reports. We hope that IJAV will be cited in most of the case reports related to clinical anatomy and anatomical variations in near future.In NEUROANATOMY, we encouraged the submission of case reports in the area of neuroanatomy. Whereas in IJAV, besides neuroanatomy, we will consider case reports in any area related to human anatomy. The scope of IJAV will encompass any anatomical variations in gross, radiological and surgical anatomy. Case reports in clinical anatomy are also welcome.All submitted articles will be peer-reviewed. No processing fee will be charged from authors. One of the most important features of IJAV will be speedy review and rapid publication. We strive to publish an accepted manuscript within three weeks of initial submission. Our young and dynamic Scientific Advisory Board will achieve this objective.A few remarks about our logo and page design: Prof. Dr. M. Mustafa ALDUR designed our logo, being inspired by a quadricuspid aortic valve case, reported by Francesco FORMICA et al

  14. The Accuracy of Conformation of a Generic Surface Mesh for the Analysis of Facial Soft Tissue Changes

    Science.gov (United States)

    Cheung, Man Yan; Almukhtar, Anas; Keeling, Andrew; Hsung, Tai-Chiu; Ju, Xiangyang; McDonald, James; Ayoub, Ashraf; Khambay, Balvinder Singh

    2016-01-01

    Purpose Three dimensional analysis of the face is required for the assessment of complex changes following surgery, pathological conditions and to monitor facial growth. The most suitable method may be “dense surface correspondence”. Materials and Methods This method utilizes a generic facial mesh and “conformation process” to establish anatomical correspondences between two facial images. The aim of this study was to validate the use of conformed meshes to measure simulated maxillary and mandibular surgical movements. The “simulation” was performed by deforming the actual soft tissues of the participant during image acquisition. The study was conducted on 20 volunteers and used 77 facial landmarks pre-marked over six anatomical regions; left cheek, right cheek, left upper lip, philtrum, right upper lip and chin region. Each volunteer was imaged at rest and after performing 5 different simulated surgical procedures using 3D stereophotogrammetry. The simulated surgical movement was determined by measuring the Euclidean distances and the mean absolute x, y and z distances of the landmarks making up the six regions following digitization. A generic mesh was then conformed to each of the aligned six facial 3D images. The same six regions were selected on the aligned conformed simulated meshes and the surgical movement determined by determining the Euclidean distances and the mean absolute x, y and z distances of the mesh points making up the six regions were determined. Results In all cases the mean Euclidian distance between the simulated movement and conformed region was less than 0.7mm. For the x, y and z directions the majority of differences in the mean absolute distances were less than 1.0mm except in the x-direction for the left and right cheek regions, which was above 2.0mm. Conclusions This concludes that the conformation process has an acceptable level of accuracy and is a valid method of measuring facial change between two images i.e. pre- and

  15. Anatomic atlas for computed tomography in the mesaticephalic dog: caudal abdomen and pelvis

    International Nuclear Information System (INIS)

    The purpose of this study was to produce a comprehensive anatomic atlas of CT anatomy of the dog for use by veterinary radiologists, clinicians, and surgeons. Whole-body CT images of two mature beagle dogs were made with the dogs supported in sternal recumbency and using a slice thickness of 13 mm. At the end of the CT session, each dog was euthanized, and while carefully maintaining the same position, the body was frozen. The body was then sectioned at 13-mm intervals, with the cuts matched as closely as possible to the CT slices. The frozen sections were cleaned, photographed, and radiographed using xeroradiography. Each CT image was studied and compared with its corresponding xeroradiograph and anatomic section to assist in the accurate identification of specific structures. Clinically relevant anatomic structures were identified and labeled in the three corresponding photographs (CT image, xeroradiograph, and anatomic section). In previous papers, the head and neck, and the thorax and cranial abdomen of the mesaticephalic (beagle) dog were presented. In this paper, the caudal part of the abdomen and pelvis of the bitch and male dog are presented

  16. Anatomic atlas for computed tomography in the mesaticephalic dog: head and neck

    International Nuclear Information System (INIS)

    The purpose of this study was to produce a comprehensive anatomic atlas of CT anatomy of the dog for use by veterinary radiologists, clinicians, and surgeons. Whole-body CT images of two mature beagle dogs were made with the dogs supported in sternal recumbency and using a slice thickness of 13 mm. The head was scanned using high-resolution imaging with a slice thickness of 8 mm. At the end of the CT session, each dog was euthanized, and while carefully maintaining the same position, the body was placed in a walk-in freezer until completely frozen. The body was then sectioned at 13-mm (head at 8-mm) intervals, with the cuts matched as closely as possible to the CT slices. The forzen sections were cleaned, photographed, and radiographed using xeroradiography. Each CT image was studied and compared with its corresponding xeroradiograph and anatomic section to assist in the accurate identification of specific structures. Intact, sagittally sectioned, and disarticulated dog skulls were used as reference models. Clinically relevant anatomic structures were identified and labeled in the three corresponding photographs (CT image, xeroradiograph, and anatomic section). In this paper, the CT anatomy of the head and neck of the mesaticephalic dog is presented

  17. High-Order Conservative Remapping with a posteriori MOOD stabilization on polygonal meshes

    OpenAIRE

    Blanchard, Ghislain; Loubere, Raphael

    2015-01-01

    In this article we present a 2D conservative remapping method which relies on exact polygonal mesh in-tersection, high accurate polynomial reconstruction (up to degree 5) and a posteriori stabilization based onMOOD paradigm [21, 30, 31, 80]. This paradigm does not compute any sort of a priori limiter for the poly-nomial reconstructions. Instead it rather observes if the candidate solution after remapping does not fulfilluser-given validity criteria, and, in this case, locally to those so-call...

  18. Accurate Modeling of Advanced Reflectarrays

    DEFF Research Database (Denmark)

    Zhou, Min

    Analysis and optimization methods for the design of advanced printed re ectarrays have been investigated, and the study is focused on developing an accurate and efficient simulation tool. For the analysis, a good compromise between accuracy and efficiency can be obtained using the spectral domain...

  19. Microstereolithography-Based Fabrication of Anatomically Shaped Beta-Tricalcium Phosphate Scaffolds for Bone Tissue Engineering.

    Science.gov (United States)

    Du, Dajiang; Asaoka, Teruo; Shinohara, Makoto; Kageyama, Tomonori; Ushida, Takashi; Furukawa, Katsuko Sakai

    2015-01-01

    Porous ceramic scaffolds with shapes matching the bone defects may result in more efficient grafting and healing than the ones with simple geometries. Using computer-assisted microstereolithography (MSTL), we have developed a novel gelcasting indirect MSTL technology and successfully fabricated two scaffolds according to CT images of rabbit femur. Negative resin molds with outer 3D dimensions conforming to the femur and an internal structure consisting of stacked meshes with uniform interconnecting struts, 0.5 mm in diameter, were fabricated by MSTL. The second mold type was designed for cortical bone formation. A ceramic slurry of beta-tricalcium phosphate (β-TCP) with room temperature vulcanization (RTV) silicone as binder was cast into the molds. After the RTV silicone was completely cured, the composite was sintered at 1500°C for 5 h. Both gross anatomical shape and the interpenetrating internal network were preserved after sintering. Even cortical structure could be introduced into the customized scaffolds, which resulted in enhanced strength. Biocompatibility was confirmed by vital staining of rabbit bone marrow mesenchymal stromal cells cultured on the customized scaffolds for 5 days. This fabrication method could be useful for constructing bone substitutes specifically designed according to local anatomical defects.

  20. Microstereolithography-Based Fabrication of Anatomically Shaped Beta-Tricalcium Phosphate Scaffolds for Bone Tissue Engineering

    Directory of Open Access Journals (Sweden)

    Dajiang Du

    2015-01-01

    Full Text Available Porous ceramic scaffolds with shapes matching the bone defects may result in more efficient grafting and healing than the ones with simple geometries. Using computer-assisted microstereolithography (MSTL, we have developed a novel gelcasting indirect MSTL technology and successfully fabricated two scaffolds according to CT images of rabbit femur. Negative resin molds with outer 3D dimensions conforming to the femur and an internal structure consisting of stacked meshes with uniform interconnecting struts, 0.5 mm in diameter, were fabricated by MSTL. The second mold type was designed for cortical bone formation. A ceramic slurry of beta-tricalcium phosphate (β-TCP with room temperature vulcanization (RTV silicone as binder was cast into the molds. After the RTV silicone was completely cured, the composite was sintered at 1500°C for 5 h. Both gross anatomical shape and the interpenetrating internal network were preserved after sintering. Even cortical structure could be introduced into the customized scaffolds, which resulted in enhanced strength. Biocompatibility was confirmed by vital staining of rabbit bone marrow mesenchymal stromal cells cultured on the customized scaffolds for 5 days. This fabrication method could be useful for constructing bone substitutes specifically designed according to local anatomical defects.

  1. Development and validation of a particle-mesh method for incompressible multiphase flows

    International Nuclear Information System (INIS)

    A hybrid method to simulate unsteady multiphase flows in which a sharp interface separates incompressible fluids of different density and viscosity is described. One phase is represented by moving particles and the other phase is defined on stationary mesh. The flow field is discretized by a conservative finite volume approximation on the stationary mesh, and the interface is automatically captured by the distribution of particles moving through the stationary mesh. The effects of surface tension and wall adhesion are evaluated by the Continuum Surface Force (CSF) model. The different phases are treated as one fluid with variable material properties. Advection of fluid properties such as density and viscosity is done by following the motion of the particles. The method simplifies the calculation of interface interaction, enables accurate modeling of two- and three-dimensional multiphase flows and does not impose any modeling restrictions on the dynamic evolutions of fluid interfaces having surface tension. The surface tension model has been validated on both static and dynamic interfaces having surface tension. Several two-dimensional numerical simulations suggest that large simulations involving interacting interfaces are feasible. The method would be extended to many new and physically interesting problems, such as the annular-dispersed flow in BWR fuel bundle. (author)

  2. Application of a heterogeneous coarse mesh transport method to a MOX benchmark problem

    International Nuclear Information System (INIS)

    Recently, a coarse mesh transport method was extended to 2-D geometry by coupling Monte Carlo response function calculations to deterministic sweeps for converging the partial currents on the coarse mesh boundaries. More extensive testing of the new method has been performed with the previously published continuous energy benchmark problem, as well as the multigroup C5G7 MOX problem. The effect of the partial current representation in space, for the MOX problem, and in space and energy, for the smaller problem, on the accuracy of the results is the focus of this paper. For the MOX problem, accurate results were obtained with the assumption that the partial currents are piecewise-constant on four spatial segments per coarse mesh interface. Specifically, the errors in the system multiplication factor and the average absolute pin power were 0.12% and 0.68%, respectively. The root mean square and the mean relative pin power errors were 1.15% and 0.56%, respectively. (authors)

  3. Generating quality tetrahedral meshes from binary volumes

    DEFF Research Database (Denmark)

    Hansen, Mads Fogtmann; Bærentzen, Jakob Andreas; Larsen, Rasmus

    2010-01-01

    This paper presents two new quality measures for tetrahedra which are smooth and well-suited for gradient based optimization. Both measures are formulated as a distance from the regular tetrahedron and utilize the fact that the covariance of the vertices of a regular tetrahedron is isotropic. We...... use these measures to generate high quality meshes from signed distance maps. This paper also describes an approach for computing (smooth) signed distance maps from binary volumes as volumetric data in many cases originate from segmentation of objects from imaging techniques such as CT, MRI, etc...... generation algorithm on four examples (torus, Stanford dragon, brain mask, and pig back) and report the dihedral angle, aspect ratio and radius-edge ratio. Even though, the algorithm incorporates none of the mentioned quality measures in the compression stage it receives a good score for all these measures...

  4. Parallel-In-Time For Moving Meshes

    Energy Technology Data Exchange (ETDEWEB)

    Falgout, R. D. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Manteuffel, T. A. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Southworth, B. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Schroder, J. B. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)

    2016-02-04

    With steadily growing computational resources available, scientists must develop e ective ways to utilize the increased resources. High performance, highly parallel software has be- come a standard. However until recent years parallelism has focused primarily on the spatial domain. When solving a space-time partial di erential equation (PDE), this leads to a sequential bottleneck in the temporal dimension, particularly when taking a large number of time steps. The XBraid parallel-in-time library was developed as a practical way to add temporal parallelism to existing se- quential codes with only minor modi cations. In this work, a rezoning-type moving mesh is applied to a di usion problem and formulated in a parallel-in-time framework. Tests and scaling studies are run using XBraid and demonstrate excellent results for the simple model problem considered herein.

  5. Superoleophobic Surfaces Obtained via Hierarchical Metallic Meshes.

    Science.gov (United States)

    Grynyov, Roman; Bormashenko, Edward; Whyman, Gene; Bormashenko, Yelena; Musin, Albina; Pogreb, Roman; Starostin, Anton; Valtsifer, Viktor; Strelnikov, Vladimir; Schechter, Alex; Kolagatla, Srikanth

    2016-05-01

    Hierarchical metallic surfaces demonstrating pronounced water and oil repellence are reported. The surfaces were manufactured with stainless-steel microporous meshes, which were etched with perfluorononanoic acid. As a result, a hierarchical relief was created, characterized by roughness at micro- and sub-microscales. Pronounced superoleophobicity was registered with regard to canola, castor, sesame, flax, crude (petroleum), and engine oils. Relatively high sliding angles were recorded for 5 μL turpentine, olive, and silicone oil droplets. The stability of the Cassie-like air trapping wetting state, established with water/ethanol solutions, is reported. The omniphobicity of the surfaces is due to the interplay of their hierarchical relief and surface fluorination. PMID:27077637

  6. Hypersonic Flow Computations on Unstructured Meshes

    Science.gov (United States)

    Bibb, K. L.; Riley, C. J.; Peraire, J.

    1997-01-01

    A method for computing inviscid hypersonic flow over complex configurations using unstructured meshes is presented. The unstructured grid solver uses an edge{based finite{volume formulation. Fluxes are computed using a flux vector splitting scheme that is capable of representing constant enthalpy solutions. Second{order accuracy in smooth flow regions is obtained by linearly reconstructing the solution, and stability near discontinuities is maintained by locally forcing the scheme to reduce to first-order accuracy. The implementation of the algorithm to parallel computers is described. Computations using the proposed method are presented for a sphere-cone configuration at Mach numbers of 5.25 and 10.6, and a complex hypersonic re-entry vehicle at Mach numbers of 4.5 and 9.8. Results are compared to experimental data and computations made with established structured grid methods. The use of the solver as a screening tool for rapid aerodynamic assessment of proposed vehicles is described.

  7. Adaptive Mesh Refinement for Characteristic Grids

    CERN Document Server

    Thornburg, Jonathan

    2009-01-01

    I consider techniques for Berger-Oliger adaptive mesh refinement (AMR) when numerically solving partial differential equations with wave-like solutions, using characteristic (double-null) grids. Such AMR algorithms are naturally recursive, and the best-known past Berger-Oliger characteristic AMR algorithm, that of Pretorius & Lehner (J. Comp. Phys. 198 (2004), 10), recurses on individual "diamond" characteristic grid cells. This leads to the use of fine-grained memory management, with individual grid cells kept in 2-dimensional linked lists at each refinement level. This complicates the implementation and adds overhead in both space and time. Here I describe a Berger-Oliger characteristic AMR algorithm which instead recurses on null \\emph{slices}. This algorithm is very similar to the usual Cauchy Berger-Oliger algorithm, and uses relatively coarse-grained memory management, allowing entire null slices to be stored stored in contiguous arrays in memory. The algorithm is very efficient in both space and ti...

  8. Scalable Video Streaming in Wireless Mesh Networks for Education

    Science.gov (United States)

    Liu, Yan; Wang, Xinheng; Zhao, Liqiang

    2011-01-01

    In this paper, a video streaming system for education based on a wireless mesh network is proposed. A wireless mesh network is a self-organizing, self-managing and reliable intelligent network, which allows educators to deploy a network quickly. Video streaming plays an important role in this system for multimedia data transmission. This new…

  9. Electrical performance of wire mesh for spacecraft deployable reflector antennas

    Science.gov (United States)

    Turner, Greg

    Mobile satellite communications systems require large, high gain antennas at the spacecraft to minimize the antenna gain and power requirements for mobile user elements. The use of a deployable reflector antenna for these applications provides a lightweight system that can be compactly stowed prior to deployment on orbit. The mesh surface material is a critical component in the deployable reflector antenna design. The mesh is required to provide the desired electrical performance as well as the mechanical properties that are necessary to deploy and maintain the reflector surface on orbit. Of particular interest in multi-channel communications applications is the generation of Passive InterModulation (PIM) products at the reflector surface that can result in interference in the receive band. Wire mesh was specifically identified by some as having a high potential for PIM generation based solely on the existence of nonpermanent metal to metal contacts at the junctions that are inherent in the mesh design. There are a number of other factors, however, that reduce the likelihood of PIM occurring at the mesh reflector surface. Experimental data presented demonstrate that mesh PIM generation is not significant for typical applications. PIM and reflectivity performance of wire mesh composed of gold plated molybdenum wire in a tricot knit are described. This type of mesh was successfully used for the deployable Single Access Antennas of the Tracking and Data Relay Satellite System.

  10. Vector diffraction analysis of reflector antennas with mesh surfaces

    Science.gov (United States)

    Rahmat-Samii, Y.; Lee, S.-W.

    1985-01-01

    Reflector antennas with mesh surfaces are used extensively in many satellite and ground antenna systems. A strip-aperture modeling of commonly used mesh surfaces is presented which provides considerable versatility in characterizing the mesh cells. The mesh transmission coefficients are constructed using a Floquet-modal expansion in conjuction with two dominant aperture modes. To account for the mesh local coordinates, the Eulerian angle transformation is invoked to obtain the total induced current on the curved reflector surface. General formulas are presented to show how the solid surface induced current is modified due to the transmission through the mesh. The effects of a variety of mesh configurations on both the co-polar and cross-polar patterns of reflector antennas are studied by numerically evaluating the vector diffraction integral using the Jacobi-Bessel expansion. For some special cases, a comparison is made with the results of the commonly used wire-grid formulation. Many of the numerical data are tailored to the dimensions of a conceptually designed mesh deployable offset reflector of the land mobile satellite system (LMSS).

  11. The suitability of mesh membrane material for radiometer reflector applications

    Science.gov (United States)

    Croswell, W. F.

    1982-03-01

    The standard measurement system used for evaluating the transmission properties of mesh used in deployable antennas is shown schematically. The system allows the rapid measurement of the transmissivity of mesh samples at a given incidence angle. The analysis has the advantage in that the effects of conductivity loss, junction impedance, and cross polarization can be treated.

  12. Laparoscopic sacrocolpopexy versus transvaginal mesh for recurrent pelvic organ prolapse.

    Science.gov (United States)

    Iglesia, Cheryl B; Hale, Douglass S; Lucente, Vincent R

    2013-03-01

    Both expert surgeons agree with the following: (1) Surgical mesh, whether placed laparoscopically or transvaginally, is indicated for pelvic floor reconstruction in cases involving recurrent advanced pelvic organ prolapse. (2) Procedural expertise and experience gained from performing a high volume of cases is fundamentally necessary. Knowledge of outcomes and complications from an individual surgeon's audit of cases is also needed when discussing the risks and benefits of procedures and alternatives. Yet controversy still exists on how best to teach new surgical techniques and optimal ways to efficiently track outcomes, including subjective and objective cure of prolapse as well as perioperative complications. A mesh registry will be useful in providing data needed for surgeons. Cost factors are also a consideration since laparoscopic and especially robotic surgical mesh procedures are generally more costly than transvaginal mesh kits when operative time, extra instrumentation and length of stay are included. Long-term outcomes, particularly for transvaginal mesh procedures, are lacking. In conclusion, all surgery poses risks; however, patients should be made aware of the pros and cons of various routes of surgery as well as the potential risks and benefits of using mesh. Surgeons should provide patients with honest information about their own experience implanting mesh and also their experience dealing with mesh-related complications.

  13. Lagrangian fluid dynamics using the Voronoi-Delauanay mesh

    International Nuclear Information System (INIS)

    A Lagrangian technique for numerical fluid dynamics is described. This technique makes use of the Voronoi mesh to efficiently locate new neighbors, and it uses the dual (Delaunay) triangulation to define computational cells. This removes all topological restrictions and facilitates the solution of problems containing interfaces and multiple materials. To improve computational accuracy a mesh smoothing procedure is employed

  14. Staged Closure of Giant Omphalocele using Synthetic Mesh

    Directory of Open Access Journals (Sweden)

    Lalit Parida

    2014-09-01

    Full Text Available Giant omphalocele is difficult to manage and is associated with a poor outcome. A male newborn presented to our hospital with a giant omphalocele. We performed a staged closure of giant omphalocele using synthetic mesh to construct a silo and then mesh abdominoplasty in the neonatal period that led to a successful outcome within a reasonable period of hospital stay.

  15. Concomitant sublay mesh repair of umbilical hernia and abdominoplasty

    OpenAIRE

    McKnight, Catherine L; Fowler, James L; Cobb, William S; Smith, Dane E; Carbonell, Alfredo M

    2012-01-01

    Concomitant mesh repair of large umbilical hernias and abdominoplasty pose a serious risk of devascularizing the umbilical stalk. A technique of placing mesh in a sublay manner, deep to the fascial defect, for an umbilical herniorrhaphy to avoid damage to the deep umbilical perforators during an abdominoplasty is described.

  16. Electrical performance of wire mesh for spacecraft deployable reflector antennas

    Science.gov (United States)

    Turner, Greg

    1993-01-01

    Mobile satellite communications systems require large, high gain antennas at the spacecraft to minimize the antenna gain and power requirements for mobile user elements. The use of a deployable reflector antenna for these applications provides a lightweight system that can be compactly stowed prior to deployment on orbit. The mesh surface material is a critical component in the deployable reflector antenna design. The mesh is required to provide the desired electrical performance as well as the mechanical properties that are necessary to deploy and maintain the reflector surface on orbit. Of particular interest in multi-channel communications applications is the generation of Passive InterModulation (PIM) products at the reflector surface that can result in interference in the receive band. Wire mesh was specifically identified by some as having a high potential for PIM generation based solely on the existence of nonpermanent metal to metal contacts at the junctions that are inherent in the mesh design. There are a number of other factors, however, that reduce the likelihood of PIM occurring at the mesh reflector surface. Experimental data presented demonstrate that mesh PIM generation is not significant for typical applications. PIM and reflectivity performance of wire mesh composed of gold plated molybdenum wire in a tricot knit are described. This type of mesh was successfully used for the deployable Single Access Antennas of the Tracking and Data Relay Satellite System.

  17. Tangle-Free Finite Element Mesh Motion for Ablation Problems

    Science.gov (United States)

    Droba, Justin

    2016-01-01

    In numerical simulations involving boundaries that evolve in time, the primary challenge is updating the computational mesh to reflect the physical changes in the domain. In particular, the fundamental objective for any such \\mesh motion" scheme is to maintain mesh quality and suppress unphysical geometric anamolies and artifacts. External to a physical process of interest, mesh motion is an added component that determines the specifics of how to move the mesh given certain limited information from the main system. This paper develops a set of boundary conditions designed to eliminate tangling and internal collision within the context of PDE-based mesh motion (linear elasticity). These boundary conditions are developed for two- and three-dimensional meshes. The paper presents detailed algorithms for commonly occuring topological scenarios and explains how to apply them appropriately. Notably, the techniques discussed herein make use of none of the specifics of any particular formulation of mesh motion and thus are more broadly applicable. The two-dimensional algorithms are validated by an extensive verification procedure. Finally, many examples of diverse geometries in both two- and three-dimensions are shown to showcase the capabilities of the tangle-free boundary conditions.

  18. Vaginal Approaches Using Synthetic Mesh to Treat Pelvic Organ Prolapse

    Science.gov (United States)

    Moon, Jei Won

    2016-01-01

    Pelvic organ prolapse (POP) is a very common condition in elderly women. In women with POP, a sacrocolpopexy or a vaginal hysterectomy with anterior and posterior colporrhaphy has long been considered as the gold standard of treatment. However, in recent decades, the tendency to use a vaginal approach with mesh for POP surgery has been increasing. A vaginal approach using mesh has many advantages, such as its being less invasive than an abdominal approach and easier to do than a laparoscopic approach and its having a lower recurrence rate than a traditional approach. However, the advantages of a vaginal approach with mesh for POP surgery must be weighed against the disadvantages. Specific complications that have been reported when using mesh in POP procedures are mesh erosion, dyspareunia, hematomas, urinary incontinence and so on, and evidence supporting the use of transvaginal surgery with mesh is still lacking. Hence, surgeons should understand the details of the surgical pelvic anatomy, the various surgical techniques for POP surgery, including using mesh, and the possible side effects of using mesh. PMID:26962530

  19. Conformal mesh deformations with Möbius transformations

    NARCIS (Netherlands)

    Vaxman, Amir; Müller, Christian; Weber, Ofir

    2015-01-01

    We establish a framework to design triangular and circular polygonal meshes by using face-based compatible Möbius transformations. Embracing the viewpoint of surfaces from circles, we characterize discrete conformality for such meshes, in which the invariants are circles, cross-ratios, and mutual in

  20. Verification of radiation transport codes with unstructured meshes

    International Nuclear Information System (INIS)

    Confidence in the results of a radiation transport code requires that the code be verified against problems with known solutions. Such verification problems may be generated by means of the method of manufactured solutions. Previously we reported the application of this method to the verification of radiation transport codes for structured meshes, in particular the SCEPTRE code. We extend this work to verification with unstructured meshes and again apply it to SCEPTRE. We report on additional complexities for unstructured mesh verification of transport codes. Refinement of such meshes for error convergence studies is more involved, particularly for tetrahedral meshes. Furthermore, finite element integrations arising from the presence of the streaming operator exhibit different behavior for unstructured meshes than for structured meshes. We verify SCEPTRE with a combination of 'exact' and 'inexact' problems. Errors in the results are consistent with the discretizations, either being limited to roundoff error or displaying the expected rates of convergence with mesh refinement. We also observe behaviors in the results that were difficult to analyze and predict from a strictly theoretical basis, thereby yielding benefits from verification activities beyond demonstrating code correctness. (author)

  1. Mesh Processing in Medical-Image Analysis-a Tutorial

    DEFF Research Database (Denmark)

    Levine, Joshua A.; Paulsen, Rasmus Reinhold; Zhang, Yongjie

    2012-01-01

    Medical-image analysis requires an understanding of sophisticated scanning modalities, constructing geometric models, building meshes to represent domains, and downstream biological applications. These four steps form an image-to-mesh pipeline. For research in this field to progress, the imaging...

  2. Probabilistic anatomical labeling of brain structures using statistical probabilistic anatomical maps

    Energy Technology Data Exchange (ETDEWEB)

    Kim, Jin Su; Lee, Dong Soo; Lee, Byung Il; Lee, Jae Sung; Shin, Hee Won; Chung, June Key; Lee, Myung Chul [Seoul National University College of Medicine, Seoul (Korea, Republic of)

    2002-12-01

    The use of statistical parametric mapping (SPM) program has increased for the analysis of brain PET and SPECT images. Montreal neurological institute (MNI) coordinate is used in SPM program as a standard anatomical framework. While the most researchers look up Talairach atlas to report the localization of the activations detected in SPM program, there is significant disparity between MNI templates and Talairach atlas. That disparity between Talairach and MNI coordinates makes the interpretation of SPM result time consuming, subjective and inaccurate. The purpose of this study was to develop a program to provide objective anatomical information of each x-y-z position in ICBM coordinate. Program was designed to provide the anatomical information for the given x-y-z position in MNI coordinate based on the statistical probabilistic anatomical map (SPAM) images of ICBM. When x-y-z position was given to the program, names of the anatomical structures with non-zero probability and the probabilities that the given position belongs to the structures were tabulated. The program was coded using IDL and JAVA language for the easy transplantation to any operating system or platform. Utility of this program was shown by comparing the results of this program to those of SPM program. Preliminary validation study was performed by applying this program to the analysis of PET brain activation study of human memory in which the anatomical information on the activated areas are previously known. Real time retrieval of probabilistic information with 1 mm spatial resolution was archived using the programs. Validation study showed the relevance of this program: probability that the activated area for memory belonged to hippocampal formation was more than 80%. These programs will be useful for the result interpretation of the image analysis performed on MNI coordinate, as done in SPM program.

  3. An unstructured-mesh atmospheric model for nonhydrostatic dynamics: Towards optimal mesh resolution

    Science.gov (United States)

    Szmelter, Joanna; Zhang, Zhao; Smolarkiewicz, Piotr K.

    2015-08-01

    The paper advances the limited-area anelastic model (Smolarkiewicz et al. (2013) [45]) for investigation of nonhydrostatic dynamics in mesoscale atmospheric flows. New developments include the extension to a tetrahedral-based median-dual option for unstructured meshes and a static mesh adaptivity technique using an error indicator based on inherent properties of the Multidimensional Positive Definite Advection Transport Algorithm (MPDATA). The model employs semi-implicit nonoscillatory forward-in-time integrators for soundproof PDEs, built on MPDATA and a robust non-symmetric Krylov-subspace elliptic solver. Finite-volume spatial discretisation adopts an edge-based data structure. Simulations of stratified orographic flows and the associated gravity-wave phenomena in media with uniform and variable dispersive properties verify the advancement and demonstrate the potential of heterogeneous anisotropic discretisation with large variation in spatial resolution for study of complex stratified flows that can be computationally unattainable with regular grids.

  4. TOPICAL REVIEW: Anatomical imaging for radiotherapy

    Science.gov (United States)

    Evans, Philip M.

    2008-06-01

    The goal of radiation therapy is to achieve maximal therapeutic benefit expressed in terms of a high probability of local control of disease with minimal side effects. Physically this often equates to the delivery of a high dose of radiation to the tumour or target region whilst maintaining an acceptably low dose to other tissues, particularly those adjacent to the target. Techniques such as intensity modulated radiotherapy (IMRT), stereotactic radiosurgery and computer planned brachytherapy provide the means to calculate the radiation dose delivery to achieve the desired dose distribution. Imaging is an essential tool in all state of the art planning and delivery techniques: (i) to enable planning of the desired treatment, (ii) to verify the treatment is delivered as planned and (iii) to follow-up treatment outcome to monitor that the treatment has had the desired effect. Clinical imaging techniques can be loosely classified into anatomic methods which measure the basic physical characteristics of tissue such as their density and biological imaging techniques which measure functional characteristics such as metabolism. In this review we consider anatomical imaging techniques. Biological imaging is considered in another article. Anatomical imaging is generally used for goals (i) and (ii) above. Computed tomography (CT) has been the mainstay of anatomical treatment planning for many years, enabling some delineation of soft tissue as well as radiation attenuation estimation for dose prediction. Magnetic resonance imaging is fast becoming widespread alongside CT, enabling superior soft-tissue visualization. Traditionally scanning for treatment planning has relied on the use of a single snapshot scan. Recent years have seen the development of techniques such as 4D CT and adaptive radiotherapy (ART). In 4D CT raw data are encoded with phase information and reconstructed to yield a set of scans detailing motion through the breathing, or cardiac, cycle. In ART a set of

  5. The Convergence of Geometric Mesh Cubic Spline Finite Difference Scheme for Nonlinear Higher Order Two-Point Boundary Value Problems

    OpenAIRE

    Navnit Jha; R. K. Mohanty; Vinod Chauhan

    2014-01-01

    An efficient algorithm for the numerical solution of higher (even) orders two-point nonlinear boundary value problems has been developed. The method is third order accurate and applicable to both singular and nonsingular cases. We have used cubic spline polynomial basis and geometric mesh finite difference technique for the generation of this new scheme. The irreducibility and monotone property of the iteration matrix have been established and the convergence analysis of the proposed method h...

  6. Development of a Cell-Centered Godunov-Type Finite Volume Model for Shallow Water Flow Based on Unstructured Mesh

    OpenAIRE

    Gangfeng Wu; Zhiguo He; Guohua Liu

    2014-01-01

    Based on the Godunov-type cell-centered finite volume method, this paper presents a two-dimensional well-balanced shallow water model for simulating flows over arbitrary topography with wetting and drying. The central upwind scheme is used for the computation of mass and momentum fluxes on interface. The novel aspect of the present model is a robust and accurate nonnegative water depth reconstruction method which is implemented in the unstructured mesh to achieve second-order accuracy in spac...

  7. Adaptive-mesh algorithms for computational fluid dynamics

    Science.gov (United States)

    Powell, Kenneth G.; Roe, Philip L.; Quirk, James

    1993-01-01

    The basic goal of adaptive-mesh algorithms is to distribute computational resources wisely by increasing the resolution of 'important' regions of the flow and decreasing the resolution of regions that are less important. While this goal is one that is worthwhile, implementing schemes that have this degree of sophistication remains more of an art than a science. In this paper, the basic pieces of adaptive-mesh algorithms are described and some of the possible ways to implement them are discussed and compared. These basic pieces are the data structure to be used, the generation of an initial mesh, the criterion to be used to adapt the mesh to the solution, and the flow-solver algorithm on the resulting mesh. Each of these is discussed, with particular emphasis on methods suitable for the computation of compressible flows.

  8. Passive intermodulation generation in wire mesh deployable reflector antennas

    Science.gov (United States)

    Turner, Gregory M.

    Deployable reflector antennas represent a proven technology with obvious benefits for mobile satellite applications. Harris Corporation has provided deployable reflector antennas for NASA's Tracking and Data Relay Satellite System (TDRSS). These antennas utilize a rigid, radial rib unfurlable reflector with a wire mesh surface. This type of mesh has been identified as a potential design risk for multichannel communications applications based on the potential for generation of Passive Intermodulation (PIM). These concerns are based on the existence of numerous, nonpermanent metal to metal contacts that are inherent to the mesh design. To address this issue, Harris has an ongoing IR&D program to characterize mesh PIM performance. This paper presents the results of the investigation into mesh PIM performance to date and provides background information on the design and performance of the Harris radial rib deployable reflector.

  9. Challenges in Second-Generation Wireless Mesh Networks

    Directory of Open Access Journals (Sweden)

    Thomas Huehn

    2008-10-01

    Full Text Available Wireless mesh networks have the potential to provide ubiquitous high-speed Internet access at low costs. The good news is that initial deployments of WiFi meshes show the feasibility of providing ubiquitous Internet connectivity. However, their performance is far below the necessary and achievable limit. Moreover, users' subscription in the existing meshes is dismal even though the technical challenges to get connectivity are low. This paper provides an overview of the current status of mesh networks' deployment, and highlights the technical, economical, and social challenges that need to be addressed in the next years. As a proof-of-principle study, we discuss the above-mentioned challenges with reference to three real networks: (i MagNets, an operator-driven planned two-tier mesh network; (ii Berlin Freifunk network as a pure community-driven single-tier network; (iii Weimar Freifunk network, also a community-driven but two-tier network.

  10. Challenges in Second-Generation Wireless Mesh Networks

    Directory of Open Access Journals (Sweden)

    Pescapé Antonio

    2008-01-01

    Full Text Available Wireless mesh networks have the potential to provide ubiquitous high-speed Internet access at low costs. The good news is that initial deployments of WiFi meshes show the feasibility of providing ubiquitous Internet connectivity. However, their performance is far below the necessary and achievable limit. Moreover, users' subscription in the existing meshes is dismal even though the technical challenges to get connectivity are low. This paper provides an overview of the current status of mesh networks' deployment, and highlights the technical, economical, and social challenges that need to be addressed in the next years. As a proof-of-principle study, we discuss the above-mentioned challenges with reference to three real networks: (i MagNets, an operator-driven planned two-tier mesh network; (ii Berlin Freifunk network as a pure community-driven single-tier network; (iii Weimar Freifunk network, also a community-driven but two-tier network.

  11. Feature-preserving surface mesh smoothing via suboptimal Delaunay triangulation.

    Science.gov (United States)

    Gao, Zhanheng; Yu, Zeyun; Holst, Michael

    2013-01-01

    A method of triangular surface mesh smoothing is presented to improve angle quality by extending the original optimal Delaunay triangulation (ODT) to surface meshes. The mesh quality is improved by solving a quadratic optimization problem that minimizes the approximated interpolation error between a parabolic function and its piecewise linear interpolation defined on the mesh. A suboptimal problem is derived to guarantee a unique, analytic solution that is significantly faster with little loss in accuracy as compared to the optimal one. In addition to the quality-improving capability, the proposed method has been adapted to remove noise while faithfully preserving sharp features such as edges and corners of a mesh. Numerous experiments are included to demonstrate the performance of the method.

  12. Passive intermodulation generation in wire mesh deployable reflector antennas

    Science.gov (United States)

    Turner, Gregory M.

    1993-01-01

    Deployable reflector antennas represent a proven technology with obvious benefits for mobile satellite applications. Harris Corporation has provided deployable reflector antennas for NASA's Tracking and Data Relay Satellite System (TDRSS). These antennas utilize a rigid, radial rib unfurlable reflector with a wire mesh surface. This type of mesh has been identified as a potential design risk for multichannel communications applications based on the potential for generation of Passive Intermodulation (PIM). These concerns are based on the existence of numerous, nonpermanent metal to metal contacts that are inherent to the mesh design. To address this issue, Harris has an ongoing IR&D program to characterize mesh PIM performance. This paper presents the results of the investigation into mesh PIM performance to date and provides background information on the design and performance of the Harris radial rib deployable reflector.

  13. Finite Element Meshes Auto-Generation for the Welted Bifurcation

    Institute of Scientific and Technical Information of China (English)

    YUANMei; LIYa-ping

    2004-01-01

    In this paper, firstly, a mathematical model for a specific kind of welted bifurcation is established, the parametric equation for the intersecting curve is resulted in. Secondly, a method for partitioning finite element meshes of the welted bifurcation is put forward, its main idea is that developing the main pipe surface and the branch pipe surface respectively, dividing meshes on each developing plane and obtaining meshes points, then transforming their plane coordinates into space coordinates. Finally, an applied program for finite element meshes auto-generation is simply introduced, which adopt ObjectARX technique and its running result can be shown in AutoCAD. The meshes generated in AutoCAD can be exported conveniently to most of finite element analysis soft wares, and the finite element computing result can satisfy the engineering precision requirement.

  14. Accurate Calculation of Fringe Fields in the LHC Main Dipoles

    CERN Document Server

    Kurz, S; Siegel, N

    2000-01-01

    The ROXIE program developed at CERN for the design and optimization of the superconducting LHC magnets has been recently extended in a collaboration with the University of Stuttgart, Germany, with a field computation method based on the coupling between the boundary element (BEM) and the finite element (FEM) technique. This avoids the meshing of the coils and the air regions, and avoids the artificial far field boundary conditions. The method is therefore specially suited for the accurate calculation of fields in the superconducting magnets in which the field is dominated by the coil. We will present the fringe field calculations in both 2d and 3d geometries to evaluate the effect of connections and the cryostat on the field quality and the flux density to which auxiliary bus-bars are exposed.

  15. Calculation of Accurate Hexagonal Discontinuity Factors for PARCS

    Energy Technology Data Exchange (ETDEWEB)

    Pounders. J., Bandini, B. R. , Xu, Y, and Downar, T. J.

    2007-11-01

    In this study we derive a methodology for calculating discontinuity factors consistent with the Triangle-based Polynomial Expansion Nodal (TPEN) method implemented in PARCS for hexagonal reactor geometries. The accuracy of coarse-mesh nodal methods is greatly enhanced by permitting flux discontinuities at node boundaries, but the practice of calculating discontinuity factors from infinite-medium (zero-current) single bundle calculations may not be sufficiently accurate for more challenging problems in which there is a large amount of internodal neutron streaming. The authors therefore derive a TPEN-based method for calculating discontinuity factors that are exact with respect to generalized equivalence theory. The method is validated by reproducing the reference solution for a small hexagonal core.

  16. Rotor Airloads Prediction Using Unstructured Meshes and Loose CFD/CSD Coupling

    Science.gov (United States)

    Biedron, Robert T.; Lee-Rausch, Elizabeth M.

    2008-01-01

    The FUN3D unsteady Reynolds-averaged Navier-Stokes solver for unstructured grids has been modified to allow prediction of trimmed rotorcraft airloads. The trim of the rotorcraft and the aeroelastic deformation of the rotor blades are accounted for via loose coupling with the CAMRAD II rotorcraft computational structural dynamics code. The set of codes is used to analyze the HART-II Baseline, Minimum Noise and Minimum Vibration test conditions. The loose coupling approach is found to be stable and convergent for the cases considered. Comparison of the resulting airloads and structural deformations with experimentally measured data is presented. The effect of grid resolution and temporal accuracy is examined. Rotorcraft airloads prediction presents a very substantial challenge for Computational Fluid Dynamics (CFD). Not only must the unsteady nature of the flow be accurately modeled, but since most rotorcraft blades are not structurally stiff, an accurate simulation must account for the blade structural dynamics. In addition, trim of the rotorcraft to desired thrust and moment targets depends on both aerodynamic loads and structural deformation, and vice versa. Further, interaction of the fuselage with the rotor flow field can be important, so that relative motion between the blades and the fuselage must be accommodated. Thus a complete simulation requires coupled aerodynamics, structures and trim, with the ability to model geometrically complex configurations. NASA has recently initiated a Subsonic Rotary Wing (SRW) Project under the overall Fundamental Aeronautics Program. Within the context of SRW are efforts aimed at furthering the state of the art of high-fidelity rotorcraft flow simulations, using both structured and unstructured meshes. Structured-mesh solvers have an advantage in computation speed, but even though remarkably complex configurations may be accommodated using the overset grid approach, generation of complex structured-mesh systems can require

  17. Tennis elbow. Anatomical, epidemiological and therapeutic aspects.

    Science.gov (United States)

    Verhaar, J A

    1994-10-01

    Five studies of tennis elbow are presented. Epidemiological studies showed an incidence of tennis elbow between 1 and 2%. The prevalence of tennis elbow in women between 40 and 50 years of age was 10%. Half of the patients with tennis elbow seek medical attention. Local corticosteroid injections were superior to the physiotherapy regime of Cyriax. Release of the common forearm extensor origin resulted in 70% excellent or good results one year after operation and 89% at five years. Anatomical investigations and nerve conduction studies of the Radial Tunnel Syndrome supported the hypothesis that the Lateral Cubital Force Transmission System is involved in the pathogenesis of tennis elbow.

  18. Constitutional and Anatomical Characteristics of Mature Women

    Institute of Scientific and Technical Information of China (English)

    Vladimir NNikolenko; DmitryBNikityuk; SvetlanaVKlochkova; AnastasiaABahmet

    2015-01-01

    Objective To identify the constitutional and anatomical peculiarities of constitution of women of mature age.Methods There was completed comprehensive anthropometric and bio-electrical survey of 651 mature women ( relative norm) living in the Moscow region .Results The quantitative distribution of women by somatotypological affiliation was revealed;anthropometric and body component composition in representatives of different somatotypes were defined .Conclusion Thus, the performed study revealed and quantiely character-ised the distribution of women according to their constitutional types in the studied population of mature age women living in Moscow region under the relative norm conditions .

  19. Resorbable biosynthetic mesh for crural reinforcement during hiatal hernia repair.

    Science.gov (United States)

    Alicuben, Evan T; Worrell, Stephanie G; DeMeester, Steven R

    2014-10-01

    The use of mesh to reinforce crural closure during hiatal hernia repair is controversial. Although some studies suggest that using synthetic mesh can reduce recurrence, synthetic mesh can erode into the esophagus and in our opinion should be avoided. Studies with absorbable or biologic mesh have not proven to be of benefit for recurrence. The aim of this study was to evaluate the outcome of hiatal hernia repair with modern resorbable biosynthetic mesh in combination with adjunct tension reduction techniques. We retrospectively analyzed all patients who had crural reinforcement during repair of a sliding or paraesophageal hiatal hernia with Gore BioA resorbable mesh. Objective follow-up was by videoesophagram and/or esophagogastroduodenoscopy. There were 114 patients. The majority of operations (72%) were laparoscopic primary repairs with all patients receiving a fundoplication. The crura were closed primarily in all patients and reinforced with a BioA mesh patch. Excessive tension prompted a crural relaxing incision in four per cent and a Collis gastroplasty in 39 per cent of patients. Perioperative morbidity was minor and unrelated to the mesh. Median objective follow-up was one year, but 18 patients have objective follow-up at two or more years. A recurrent hernia was found in one patient (0.9%) three years after repair. The use of crural relaxing incisions and Collis gastroplasty in combination with crural reinforcement with resorbable biosynthetic mesh is associated with a low early hernia recurrence rate and no mesh-related complications. Long-term follow-up will define the role of these techniques for hiatal hernia repair.

  20. Robust, multidimensional mesh motion based on Monge-Kantorovich equidistribution

    Energy Technology Data Exchange (ETDEWEB)

    Delzanno, G L [Los Alamos National Laboratory; Finn, J M [Los Alamos National Laboratory

    2009-01-01

    Mesh-motion (r-refinement) grid adaptivity schemes are attractive due to their potential to minimize the numerical error for a prescribed number of degrees of freedom. However, a key roadblock to a widespread deployment of the technique has been the formulation of robust, reliable mesh motion governing principles, which (1) guarantee a solution in multiple dimensions (2D and 3D), (2) avoid grid tangling (or folding of the mesh, whereby edges of a grid cell cross somewhere in the domain), and (3) can be solved effectively and efficiently. In this study, we formulate such a mesh-motion governing principle, based on volume equidistribution via Monge-Kantorovich optimization (MK). In earlier publications [1, 2], the advantages of this approach in regards to these points have been demonstrated for the time-independent case. In this study, demonstrate that Monge-Kantorovich equidistribution can in fact be used effectively in a time stepping context, and delivers an elegant solution to the otherwise pervasive problem of grid tangling in mesh motion approaches, without resorting to ad-hoc time-dependent terms (as in moving-mesh PDEs, or MMPDEs [3, 4]). We explore two distinct r-refinement implementations of MK: direct, where the current mesh relates to an initial, unchanging mesh, and sequential, where the current mesh is related to the previous one in time. We demonstrate that the direct approach is superior in regards to mesh distortion and robustness. The properties of the approach are illustrated with a paradigmatic hyperbolic PDE, the advection of a passive scalar. Imposed velocity flow fields or varying vorticity levels and flow shears are considered.

  1. An anatomical comparison of two minimally invasive pelvic reconstructive surgeries using fresh female cadavers

    Institute of Scientific and Technical Information of China (English)

    Wang Wenyan; Zhu Lan; Wei Bing; Lang Jinghe

    2014-01-01

    Background During the past decade,graft materials have been widespread used in the vagina in order to correct pelvic organ prolapse.The aim of this study was to describe and compare the exact anatomical position of the puncture devices and their relations to the relevant anatomical structures in the ProliftTM and a modified pelvic reconstructive surgery with mesh.Methods Twelve fresh cadavers were allocated randomly to either the ProliftTM or the modified pelvic reconstructive surgery group.Each group had six fresh cadavers.Relevant distances between the puncture devices and anatomical structures were recorded in both minimally invasive puncture surgeries.Results The mean distances from the posterior puncture points of the obturator membrane to the posterior branch of obturator arteries were shorter ((0.60±0.36) cm and (0.78±0.10) cm) when compared with the distances to the anterior branch of obturator arteries ((1.53±0.46) cm and (1.86±0.51) cm) for the reconstruction of the anterior compartment in both surgeries (all P <0.05).The distance from the puncture points of the pelvic floor through the ischiorectal fossa to the coccygeal and inferior gluteal arteries in the ProliftTM technique ((0.88±0.10) cm) and ((1.59±0.36) cm)) were much shorter than that in the modified pelvic reconstructive surgery ((2.95±0.09) cm) and ((3.40±0.36) cm)) for the reconstruction of the middle and posterior compartments (all P <0.05).Conclusions Compared with the ProliftTM technique,the modified pelvic reconstructive surgery with mesh would be safer not to cause great damage to the inferior gluteal arteries and the coccygeal arteries.The posterior branch of obturator arteries would be easier to be injured than the anterior branch of obturator arteries during anterior compartment reconstruction in both surgeries.

  2. Parameterized reduced order models from a single mesh using hyper-dual numbers

    Science.gov (United States)

    Brake, M. R. W.; Fike, J. A.; Topping, S. D.

    2016-06-01

    In order to assess the predicted performance of a manufactured system, analysts must consider random variations (both geometric and material) in the development of a model, instead of a single deterministic model of an idealized geometry with idealized material properties. The incorporation of random geometric variations, however, potentially could necessitate the development of thousands of nearly identical solid geometries that must be meshed and separately analyzed, which would require an impractical number of man-hours to complete. This research advances a recent approach to uncertainty quantification by developing parameterized reduced order models. These parameterizations are based upon Taylor series expansions of the system's matrices about the ideal geometry, and a component mode synthesis representation for each linear substructure is used to form an efficient basis with which to study the system. The numerical derivatives required for the Taylor series expansions are obtained via hyper-dual numbers, and are compared to parameterized models constructed with finite difference formulations. The advantage of using hyper-dual numbers is two-fold: accuracy of the derivatives to machine precision, and the need to only generate a single mesh of the system of interest. The theory is applied to a stepped beam system in order to demonstrate proof of concept. The results demonstrate that the hyper-dual number multivariate parameterization of geometric variations, which largely are neglected in the literature, are accurate for both sensitivity and optimization studies. As model and mesh generation can constitute the greatest expense of time in analyzing a system, the foundation to create a parameterized reduced order model based off of a single mesh is expected to reduce dramatically the necessary time to analyze multiple realizations of a component's possible geometry.

  3. Numerical analysis on the external characteristic of torque converter based on dynamic mesh

    Science.gov (United States)

    Su, H. S.; Yang, G. L.; Zhang, L. Q.; Zhang, J. F.; Li, R. N.

    2013-12-01

    For analysis of the flow field of torque converter's start operating performance, the paper established a mathematical model and simulated the numerical value of YJ series hydrodynamic torque converter. In view of the partial impact fluid and cavitation phenomenon in processes such as multiple flow area coupling algorithms the sliding mesh method cannot achieve the flow parameters real-time transfer problems between the impellers. The model, established by dynamic mesh technology, set pump wheel and turbine blade for the rotating part of dynamic mesh, pick up each iterative step of pump wheel and turbine by the size of moment through the function, and deposited it into the text file. Through calculating the changes of text data, we can judge whether the result is stable. Take the comprehensive consideration of the stability, accuracy and efficiency during the calculation, set pressure-velocity coupling algorithm as the SIMPLE algorithm, set spatial discrete format as the first order up stream format, set turbulence model as the RNG K-ε model, and realize the turbulence flow transient calculation of the hydrodynamic torque converter. Numerical simulation by the calculation was compared with the moment data from the experiments, the results show that the model established by dynamic mesh technology is more accurate and reliable. Thereafter, the pump wheel's start-up rotate speed increased from 0 to 1000r/min gradually, then remained constant. Through the analysis, we concluded as follows: the pump wheel 's moment increased gradually, the value of the turbine's moment was small, the flow increased slowly from the positive value in the early stage. Then the turbine's moment increased gradually, the flow changed into negative value until stable.

  4. An efficient 3D traveltime calculation using coarse-grid mesh for shallow-depth source

    Science.gov (United States)

    Son, Woohyun; Pyun, Sukjoon; Lee, Ho-Young; Koo, Nam-Hyung; Shin, Changsoo

    2016-10-01

    3D Kirchhoff pre-stack depth migration requires an efficient algorithm to compute first-arrival traveltimes. In this paper, we exploited a wave-equation-based traveltime calculation algorithm, which is called the suppressed wave equation estimation of traveltime (SWEET), and the equivalent source distribution (ESD) algorithm. The motivation of using the SWEET algorithm is to solve the Laplace-domain wave equation using coarse grid spacing to calculate first-arrival traveltimes. However, if a real source is located at shallow-depth close to free surface, we cannot accurately calculate the wavefield using coarse grid spacing. So, we need an additional algorithm to correctly simulate the shallow source even for the coarse grid mesh. The ESD algorithm is a method to define a set of distributed nodal sources that approximate a point source at the inter-nodal location in a velocity model with large grid spacing. Thanks to the ESD algorithm, we can efficiently calculate the first-arrival traveltimes of waves emitted from shallow source point even when we solve the Laplace-domain wave equation using a coarse-grid mesh. The proposed algorithm is applied to the SEG/EAGE 3D salt model. From the result, we note that the combination of SWEET and ESD algorithms can be successfully used for the traveltime calculation under the condition of a shallow-depth source. We also confirmed that our algorithm using coarse-grid mesh requires less computational time than the conventional SWEET algorithm using relatively fine-grid mesh.

  5. SU-D-207-04: GPU-Based 4D Cone-Beam CT Reconstruction Using Adaptive Meshing Method

    Energy Technology Data Exchange (ETDEWEB)

    Zhong, Z; Gu, X; Iyengar, P; Mao, W; Wang, J [UT Southwestern Medical Center, Dallas, TX (United States); Guo, X [University of Texas at Dallas, Richardson, TX (United States)

    2015-06-15

    Purpose: Due to the limited number of projections at each phase, the image quality of a four-dimensional cone-beam CT (4D-CBCT) is often degraded, which decreases the accuracy of subsequent motion modeling. One of the promising methods is the simultaneous motion estimation and image reconstruction (SMEIR) approach. The objective of this work is to enhance the computational speed of the SMEIR algorithm using adaptive feature-based tetrahedral meshing and GPU-based parallelization. Methods: The first step is to generate the tetrahedral mesh based on the features of a reference phase 4D-CBCT, so that the deformation can be well captured and accurately diffused from the mesh vertices to voxels of the image volume. After the mesh generation, the updated motion model and other phases of 4D-CBCT can be obtained by matching the 4D-CBCT projection images at each phase with the corresponding forward projections of the deformed reference phase of 4D-CBCT. The entire process of this 4D-CBCT reconstruction method is implemented on GPU, resulting in significantly increasing the computational efficiency due to its tremendous parallel computing ability. Results: A 4D XCAT digital phantom was used to test the proposed mesh-based image reconstruction algorithm. The image Result shows both bone structures and inside of the lung are well-preserved and the tumor position can be well captured. Compared to the previous voxel-based CPU implementation of SMEIR, the proposed method is about 157 times faster for reconstructing a 10 -phase 4D-CBCT with dimension 256×256×150. Conclusion: The GPU-based parallel 4D CBCT reconstruction method uses the feature-based mesh for estimating motion model and demonstrates equivalent image Result with previous voxel-based SMEIR approach, with significantly improved computational speed.

  6. Repair of large frontal temporal parietal skull defect with digitally reconstructed titanium mesh: a report of 20 cases

    Directory of Open Access Journals (Sweden)

    Gang-ge CHENG

    2013-09-01

    Full Text Available Objective To explore the clinical effect and surgical technique of the repair of large defect involving frontal, temporal, and parietal regions using digitally reconstructed titanium mesh. Methods Twenty patients with large frontal, temporal, and parietal skull defect hospitalized in Air Force General Hospital from November 2006 to May 2012 were involved in this study. In these 20 patients, there were 13 males and 7 females, aged 18-58 years (mean 39 years, and the defect size measured from 7.0cm×9.0cm to 11.5cm×14.0cm (mean 8.5cm×12.0cm. Spiral CT head scan and digital three-dimensional reconstruction of skull were performed in all the patients. The shape and geometric size of skull defect was traced based on the symmetry principle, and then the data were transferred into digital precision lathe to reconstruct a titanium mesh slightly larger (1.0-1.5cm than the skull defect, and the finally the prosthesis was perfected after pruning the border. Cranioplasty was performed 6-12 months after craniotomy using the digitally reconstructed titanium mesh. Results The digitally reconstructed titanium mesh was used in 20 patients with large frontal, temporal, parietal skull defect. The surgical technique was relatively simple, and the surgical duration was shorter than before. The titanium mesh fit to the defect of skull accurately with satisfactory molding effect, good appearance and symmetrical in shape. No related complication was found in all the patients. Conclusion Repair of large frontal, temporal, parietal skull defect with digitally reconstructed titanium mesh is more advantageous than traditional manual reconstruction, and it can improve the life quality of patients.

  7. S-Mesh: a Mesh-based on-chip network with separation of control and transmission

    Institute of Scientific and Technical Information of China (English)

    LIU Hao; ZOU Xue-cheng; JI Li-xin; CAI Meng; ZHANG Ke-feng

    2009-01-01

    The current network-on-chip (NoC) topology cannot predict subsequent switch node status promptly. Switch nodes have to perform various functions such as routing decision, data forwarding, packet buffering, congestion control and properties of an NoC system. Therefore, these make switch architecture far more complex. This article puts forward a separating on-chip network architecture based on Mesh (S-Mesh). S-Mesh is an on-chip network that separates routing decision flow from the switches. It consists of two types of networks: datapath network (DN) and control network (CN). The CN establishes data paths for data transferring in DN. Meanwhile, the CN also transfers instructions between different resources. This property makes switch architecture simple, and eliminates conflicts in network interface units between the resource and switch. Compared with 2D-Mesh, Torus Mesh, Fat-tree and Butterfly, the average packet latency in S-Mesh is the shortest when the packet length is more than 53 B. Compared with 2D-Mesh, the areas savings of S-Mesh is about 3%--7%, and the power dissipation is decreased by approximate 2%.

  8. Profitable capitation requires accurate costing.

    Science.gov (United States)

    West, D A; Hicks, L L; Balas, E A; West, T D

    1996-01-01

    In the name of costing accuracy, nurses are asked to track inventory use on per treatment basis when more significant costs, such as general overhead and nursing salaries, are usually allocated to patients or treatments on an average cost basis. Accurate treatment costing and financial viability require analysis of all resources actually consumed in treatment delivery, including nursing services and inventory. More precise costing information enables more profitable decisions as is demonstrated by comparing the ratio-of-cost-to-treatment method (aggregate costing) with alternative activity-based costing methods (ABC). Nurses must participate in this costing process to assure that capitation bids are based upon accurate costs rather than simple averages. PMID:8788799

  9. Pterion: An anatomical variation and surgical landmark

    Directory of Open Access Journals (Sweden)

    Prashant E Natekar

    2011-01-01

    Full Text Available Introduction : The frontal and the parietal bones superiorly and the greater wing of the sphenoid and the squamous temporal inferiorly of one side meet at an H-shaped sutural junction termed the pterion. This is an important anatomical and anthropological landmark as it overlies both the anterior branch of middle meningeal artery and the lateral fissure of the cerebral hemisphere. The knowledge of sutural joints between frontal, parietal, sphenoid and temporal bones at pterion is clinically, radiologically and surgically important during surgical interventions involving burr hole surgeries. Materials and Methods : Study performed on 150 dry temporal bones. The pterion, and its sutural articulations with frontal, parietal, sphenoid and temporal bones and also anatomical variations, if any, were studied. Results : Four types of pterion, i.e. sphenoparietal, frontotemporal, stellate and epipteric, were observed. Conclusions : The knowledge of the variations of pterion and its surgical anatomy, in Indian population are important for surgeons operating in the fieldThe present study will also contribute additional information of skull bone fractures in infancy and early childhood, which may be associated with large intersutural bones giving false appearance of fracture radiologically and also during surgical interventions involving burr hole surgeries, as their extensions may lead to continuation of fracture lines.

  10. FASH and MASH: female and male adult human phantoms based on polygon mesh surfaces: I. Development of the anatomy

    International Nuclear Information System (INIS)

    Among computational models, voxel phantoms based on computer tomographic (CT), nuclear magnetic resonance (NMR) or colour photographic images of patients, volunteers or cadavers have become popular in recent years. Although being true to nature representations of scanned individuals, voxel phantoms have limitations, especially when walled organs have to be segmented or when volumes of organs or body tissues, like adipose, have to be changed. Additionally, the scanning of patients or volunteers is usually made in supine position, which causes a shift of internal organs towards the ribcage, a compression of the lungs and a reduction of the sagittal diameter especially in the abdominal region compared to the regular anatomy of a person in the upright position, which in turn can influence organ and tissue absorbed or equivalent dose estimates. This study applies tools developed recently in the areas of computer graphics and animated films to the creation and modelling of 3D human organs, tissues, skeletons and bodies based on polygon mesh surfaces. Female and male adult human phantoms, called FASH (Female Adult meSH) and MASH (Male Adult meSH), have been designed using software, such as MakeHuman, Blender, Binvox and ImageJ, based on anatomical atlases, observing at the same time organ masses recommended by the International Commission on Radiological Protection for the male and female reference adult in report no 89. 113 organs, bones and tissues have been modelled in the FASH and the MASH phantoms representing locations for adults in standing posture. Most organ and tissue masses of the voxelized versions agree with corresponding data from ICRP89 within a margin of 2.6%. Comparison with the mesh-based male RPIAM and female RPIAF phantoms shows differences with respect to the material used, to the software and concepts applied, and to the anatomies created.

  11. FASH and MASH: female and male adult human phantoms based on polygon mesh surfaces: I. Development of the anatomy

    Energy Technology Data Exchange (ETDEWEB)

    Cassola, V F; Kramer, R; Khoury, H J [Department of Nuclear Energy, Federal University of Pernambuco, Avenida Prof. Luiz Freire, 1000, CEP 50740-540, Recife (Brazil); De Melo Lima, V J [Department of Anatomy, Federal University of Pernambuco, Avenida Prof. Moraes Rego, 1235, CEP 50670-901, Recife (Brazil)], E-mail: rkramer@uol.com.br

    2010-01-07

    Among computational models, voxel phantoms based on computer tomographic (CT), nuclear magnetic resonance (NMR) or colour photographic images of patients, volunteers or cadavers have become popular in recent years. Although being true to nature representations of scanned individuals, voxel phantoms have limitations, especially when walled organs have to be segmented or when volumes of organs or body tissues, like adipose, have to be changed. Additionally, the scanning of patients or volunteers is usually made in supine position, which causes a shift of internal organs towards the ribcage, a compression of the lungs and a reduction of the sagittal diameter especially in the abdominal region compared to the regular anatomy of a person in the upright position, which in turn can influence organ and tissue absorbed or equivalent dose estimates. This study applies tools developed recently in the areas of computer graphics and animated films to the creation and modelling of 3D human organs, tissues, skeletons and bodies based on polygon mesh surfaces. Female and male adult human phantoms, called FASH (Female Adult meSH) and MASH (Male Adult meSH), have been designed using software, such as MakeHuman, Blender, Binvox and ImageJ, based on anatomical atlases, observing at the same time organ masses recommended by the International Commission on Radiological Protection for the male and female reference adult in report no 89. 113 organs, bones and tissues have been modelled in the FASH and the MASH phantoms representing locations for adults in standing posture. Most organ and tissue masses of the voxelized versions agree with corresponding data from ICRP89 within a margin of 2.6%. Comparison with the mesh-based male RPI{sub A}M and female RPI{sub A}F phantoms shows differences with respect to the material used, to the software and concepts applied, and to the anatomies created.

  12. Probabilistic analysis on fault tolerance of 3-Dimensional mesh networks

    Institute of Scientific and Technical Information of China (English)

    王高才; 陈建二; 王国军; 陈松乔

    2003-01-01

    The probability model is used to analyze the fault tolerance of mesh. To simplify its analysis, it is as-sumed that the failure probability of each node is independent. A 3-D mesh is partitioned into smaller submeshes,and then the probability with which each submesh satisfies the defined condition is computed. If each submesh satis-fies the condition, then the whole mesh is connected. Consequently, the probability that a 3-D mesh is connected iscomputed assuming each node has a failure probability. Mathematical methods are used to derive a relationship be-tween network node failure probability and network connectivity probability. The calculated results show that the 3-D mesh networks can remain connected with very high probability in practice. It is formally proved that when thenetwork node failure probability is boutded by 0.45 %, the 3-D mesh networks of more than three hundred thousandnodes remain connected with probability larger than 99 %. The theoretical results show that the method is a power-ful technique to calculate the lower bound of the connectivity probability of mesh networks.

  13. How to Avoid and Deal with Pelvic Mesh Litigation.

    Science.gov (United States)

    Karlovsky, Matthew E

    2016-08-01

    Medical malpractice as it relates to transvaginal mesh implantation adds another level of responsibility when deciding on surgical options to repair stress urinary incontinence or pelvic organ prolapse. As mesh is a viable option for repair, the informed consent process must involve a time commitment to discuss thoroughly the knowns and unknowns about mesh, and potentially must cover other aspects related to surgery: FDA classification of mesh, experience, potential off label usage, and conflicts of interest. A therapeutic alliance must be developed between physician and patient to allay possible fears about the intrinsic uncertainty of surgery. Proper risk assessment of the patient and pre-operative judgment as to when and if mesh implantation is appropriate are decisions that must be documented. Resolution of a conflict from a complication can be dealt with formally or informally. Above all, sharp skills, good communication, broad knowledge base of mesh surgeries, complication management, knowledge of guidelines, along with methodical documentation can mitigate or avert mesh-related litigation. PMID:27287606

  14. A Survey of Solver-Related Geometry and Meshing Issues

    Science.gov (United States)

    Masters, James; Daniel, Derick; Gudenkauf, Jared; Hine, David; Sideroff, Chris

    2016-01-01

    There is a concern in the computational fluid dynamics community that mesh generation is a significant bottleneck in the CFD workflow. This is one of several papers that will help set the stage for a moderated panel discussion addressing this issue. Although certain general "rules of thumb" and a priori mesh metrics can be used to ensure that some base level of mesh quality is achieved, inadequate consideration is often given to the type of solver or particular flow regime on which the mesh will be utilized. This paper explores how an analyst may want to think differently about a mesh based on considerations such as if a flow is compressible vs. incompressible or hypersonic vs. subsonic or if the solver is node-centered vs. cell-centered. This paper is a high-level investigation intended to provide general insight into how considering the nature of the solver or flow when performing mesh generation has the potential to increase the accuracy and/or robustness of the solution and drive the mesh generation process to a state where it is no longer a hindrance to the analysis process.

  15. Segmentation and visualization of anatomical structures from volumetric medical images

    Science.gov (United States)

    Park, Jonghyun; Park, Soonyoung; Cho, Wanhyun; Kim, Sunworl; Kim, Gisoo; Ahn, Gukdong; Lee, Myungeun; Lim, Junsik

    2011-03-01

    This paper presents a method that can extract and visualize anatomical structures from volumetric medical images by using a 3D level set segmentation method and a hybrid volume rendering technique. First, the segmentation using the level set method was conducted through a surface evolution framework based on the geometric variation principle. This approach addresses the topological changes in the deformable surface by using the geometric integral measures and level set theory. These integral measures contain a robust alignment term, an active region term, and a mean curvature term. By using the level set method with a new hybrid speed function derived from the geometric integral measures, the accurate deformable surface can be extracted from a volumetric medical data set. Second, we employed a hybrid volume rendering approach to visualize the extracted deformable structures. Our method combines indirect and direct volume rendering techniques. Segmented objects within the data set are rendered locally by surface rendering on an object-by-object basis. Globally, all the results of subsequent object rendering are obtained by direct volume rendering (DVR). Then the two rendered results are finally combined in a merging step. This is especially useful when inner structures should be visualized together with semi-transparent outer parts. This merging step is similar to the focus-plus-context approach known from information visualization. Finally, we verified the accuracy and robustness of the proposed segmentation method for various medical volume images. The volume rendering results of segmented 3D objects show that our proposed method can accurately extract and visualize human organs from various multimodality medical volume images.

  16. Accurate determination of antenna directivity

    DEFF Research Database (Denmark)

    Dich, Mikael

    1997-01-01

    The derivation of a formula for accurate estimation of the total radiated power from a transmitting antenna for which the radiated power density is known in a finite number of points on the far-field sphere is presented. The main application of the formula is determination of directivity from power......-pattern measurements. The derivation is based on the theory of spherical wave expansion of electromagnetic fields, which also establishes a simple criterion for the required number of samples of the power density. An array antenna consisting of Hertzian dipoles is used to test the accuracy and rate of convergence...

  17. Improving the convergence properties of the moving-mesh code AREPO

    CERN Document Server

    Pakmor, Ruediger; Bauer, Andreas; Mocz, Philip; Munoz, Diego J; Ohlmann, Sebastian T; Schaal, Kevin; Zhu, Chenchon

    2015-01-01

    Accurate numerical solutions of the equations of hydrodynamics play an ever more important role in many fields of astrophysics. In this work, we reinvestigate the accuracy of the moving-mesh code \\textsc{Arepo} and show how its convergence order can be improved for general problems. In particular, we clarify that for certain problems \\textsc{Arepo} only reaches first-order convergence for its original formulation. This can be rectified by simple modifications we propose to the time integration scheme and the spatial gradient estimates of the code, both improving the accuracy of the code. We demonstrate that the new implementation is indeed second-order accurate under the $L^1$ norm, and in particular substantially improves conservation of angular momentum. Interestingly, whereas these improvements can significantly change the results of smooth test problems, we also find that cosmological simulations of galaxy formation are unaffected, demonstrating that the numerical errors eliminated by the new formulation ...

  18. Very High Order $\\PNM$ Schemes on Unstructured Meshes for the Resistive Relativistic MHD Equations

    CERN Document Server

    Dumbser, Michael

    2009-01-01

    In this paper we propose the first better than second order accurate method in space and time for the numerical solution of the resistive relativistic magnetohydrodynamics (RRMHD) equations on unstructured meshes in multiple space dimensions. The nonlinear system under consideration is purely hyperbolic and contains a source term, the one for the evolution of the electric field, that becomes stiff for low values of the resistivity. For the spatial discretization we propose to use high order $\\PNM$ schemes as introduced in \\cite{Dumbser2008} for hyperbolic conservation laws and a high order accurate unsplit time discretization is achieved using the element-local space-time discontinuous Galerkin approach proposed in \\cite{DumbserEnauxToro} for one-dimensional balance laws with stiff source terms. The divergence free character of the magnetic field is accounted for through the divergence cleaning procedure of Dedner et al. \\cite{Dedneretal}. To validate our high order method we first solve some numerical test c...

  19. Divergence-free MHD on unstructured meshes using high order finite volume schemes based on multidimensional Riemann solvers

    Science.gov (United States)

    Balsara, Dinshaw S.; Dumbser, Michael

    2015-10-01

    Several advances have been reported in the recent literature on divergence-free finite volume schemes for Magnetohydrodynamics (MHD). Almost all of these advances are restricted to structured meshes. To retain full geometric versatility, however, it is also very important to make analogous advances in divergence-free schemes for MHD on unstructured meshes. Such schemes utilize a staggered Yee-type mesh, where all hydrodynamic quantities (mass, momentum and energy density) are cell-centered, while the magnetic fields are face-centered and the electric fields, which are so useful for the time update of the magnetic field, are centered at the edges. Three important advances are brought together in this paper in order to make it possible to have high order accurate finite volume schemes for the MHD equations on unstructured meshes. First, it is shown that a divergence-free WENO reconstruction of the magnetic field can be developed for unstructured meshes in two and three space dimensions using a classical cell-centered WENO algorithm, without the need to do a WENO reconstruction for the magnetic field on the faces. This is achieved via a novel constrained L2-projection operator that is used in each time step as a postprocessor of the cell-centered WENO reconstruction so that the magnetic field becomes locally and globally divergence free. Second, it is shown that recently-developed genuinely multidimensional Riemann solvers (called MuSIC Riemann solvers) can be used on unstructured meshes to obtain a multidimensionally upwinded representation of the electric field at each edge. Third, the above two innovations work well together with a high order accurate one-step ADER time stepping strategy, which requires the divergence-free nonlinear WENO reconstruction procedure to be carried out only once per time step. The resulting divergence-free ADER-WENO schemes with MuSIC Riemann solvers give us an efficient and easily-implemented strategy for divergence-free MHD on

  20. Finite volume TVD formulation of lattice Boltzmann simulation on unstructured mesh

    Science.gov (United States)

    Patil, Dhiraj V.; Lakshmisha, K. N.

    2009-08-01

    A numerical scheme is presented for accurate simulation of fluid flow using the lattice Boltzmann equation (LBE) on unstructured mesh. A finite volume approach is adopted to discretize the LBE on a cell-centered, arbitrary shaped, triangular tessellation. The formulation includes a formal, second order discretization using a Total Variation Diminishing (TVD) scheme for the terms representing advection of the distribution function in physical space, due to microscopic particle motion. The advantage of the LBE approach is exploited by implementing the scheme in a new computer code to run on a parallel computing system. Performance of the new formulation is systematically investigated by simulating four benchmark flows of increasing complexity, namely (1) flow in a plane channel, (2) unsteady Couette flow, (3) flow caused by a moving lid over a 2D square cavity and (4) flow over a circular cylinder. For each of these flows, the present scheme is validated with the results from Navier-Stokes computations as well as lattice Boltzmann simulations on regular mesh. It is shown that the scheme is robust and accurate for the different test problems studied.

  1. Optical breast shape capture and finite-element mesh generation for electrical impedance tomography.

    Science.gov (United States)

    Forsyth, J; Borsic, A; Halter, R J; Hartov, A; Paulsen, K D

    2011-07-01

    X-ray mammography is the standard for breast cancer screening. The development of alternative imaging modalities is desirable because mammograms expose patients to ionizing radiation. Electrical impedance tomography (EIT) may be used to determine tissue conductivity, a property which is an indicator of cancer presence. EIT is also a low-cost imaging solution and does not involve ionizing radiation. In breast EIT, impedance measurements are made using electrodes placed on the surface of the patient's breast. The complex conductivity of the volume of the breast is estimated by a reconstruction algorithm. EIT reconstruction is a severely ill-posed inverse problem. As a result, noisy instrumentation and incorrect modelling of the electrodes and domain shape produce significant image artefacts. In this paper, we propose a method that has the potential to reduce these errors by accurately modelling the patient breast shape. A 3D hand-held optical scanner is used to acquire the breast geometry and electrode positions. We develop methods for processing the data from the scanner and producing volume meshes accurately matching the breast surface and electrode locations, which can be used for image reconstruction. We demonstrate this method for a plaster breast phantom and a human subject. Using this approach will allow patient-specific finite-element meshes to be generated which has the potential to improve the clinical value of EIT for breast cancer diagnosis.

  2. Improved Simulation of Electrodiffusion in the Node of Ranvier by Mesh Adaptation.

    Science.gov (United States)

    Dione, Ibrahima; Deteix, Jean; Briffard, Thomas; Chamberland, Eric; Doyon, Nicolas

    2016-01-01

    In neural structures with complex geometries, numerical resolution of the Poisson-Nernst-Planck (PNP) equations is necessary to accurately model electrodiffusion. This formalism allows one to describe ionic concentrations and the electric field (even away from the membrane) with arbitrary spatial and temporal resolution which is impossible to achieve with models relying on cable theory. However, solving the PNP equations on complex geometries involves handling intricate numerical difficulties related either to the spatial discretization, temporal discretization or the resolution of the linearized systems, often requiring large computational resources which have limited the use of this approach. In the present paper, we investigate the best ways to use the finite elements method (FEM) to solve the PNP equations on domains with discontinuous properties (such as occur at the membrane-cytoplasm interface). 1) Using a simple 2D geometry to allow comparison with analytical solution, we show that mesh adaptation is a very (if not the most) efficient way to obtain accurate solutions while limiting the computational efforts, 2) We use mesh adaptation in a 3D model of a node of Ranvier to reveal details of the solution which are nearly impossible to resolve with other modelling techniques. For instance, we exhibit a non linear distribution of the electric potential within the membrane due to the non uniform width of the myelin and investigate its impact on the spatial profile of the electric field in the Debye layer. PMID:27548674

  3. Integration of Geographic Information System frameworks into domain discretisation and meshing processes for geophysical models

    Directory of Open Access Journals (Sweden)

    A. S. Candy

    2014-09-01

    Full Text Available Computational simulations of physical phenomena rely on an accurate discretisation of the model domain. Numerical models have increased in sophistication to a level where it is possible to support terrain-following boundaries that conform accurately to real physical interfaces, and resolve a multiscale of spatial resolutions. Whilst simulation codes are maturing in this area, pre-processing tools have not developed significantly enough to competently initialise these problems in a rigorous, efficient and recomputable manner. In the relatively disjoint field of Geographic Information Systems (GIS however, techniques and tools for mapping and analysis of geographical data have matured significantly. If data provenance and recomputability are to be achieved, the manipulation and agglomeration of data in the pre-processing of numerical simulation initialisation data for geophysical models should be integrated into GIS. A new approach to the discretisation of geophysical domains is presented, and introduced with a verified implementation. This brings together the technologies of geospatial analysis, meshing and numerical simulation models. This platform enables us to combine and build up features, quickly drafting and updating mesh descriptions with the rigour that established GIS tools provide. This, combined with the systematic workflow, supports a strong provenance for model initialisation and encourages the convergence of standards.

  4. Integration of Geographic Information System frameworks into domain discretisation and meshing processes for geophysical models

    Science.gov (United States)

    Candy, A. S.; Avdis, A.; Hill, J.; Gorman, G. J.; Piggott, M. D.

    2014-09-01

    Computational simulations of physical phenomena rely on an accurate discretisation of the model domain. Numerical models have increased in sophistication to a level where it is possible to support terrain-following boundaries that conform accurately to real physical interfaces, and resolve a multiscale of spatial resolutions. Whilst simulation codes are maturing in this area, pre-processing tools have not developed significantly enough to competently initialise these problems in a rigorous, efficient and recomputable manner. In the relatively disjoint field of Geographic Information Systems (GIS) however, techniques and tools for mapping and analysis of geographical data have matured significantly. If data provenance and recomputability are to be achieved, the manipulation and agglomeration of data in the pre-processing of numerical simulation initialisation data for geophysical models should be integrated into GIS. A new approach to the discretisation of geophysical domains is presented, and introduced with a verified implementation. This brings together the technologies of geospatial analysis, meshing and numerical simulation models. This platform enables us to combine and build up features, quickly drafting and updating mesh descriptions with the rigour that established GIS tools provide. This, combined with the systematic workflow, supports a strong provenance for model initialisation and encourages the convergence of standards.

  5. Isotropic 2D quadrangle meshing with size and orientation control

    KAUST Repository

    Pellenard, Bertrand

    2011-12-01

    We propose an approach for automatically generating isotropic 2D quadrangle meshes from arbitrary domains with a fine control over sizing and orientation of the elements. At the heart of our algorithm is an optimization procedure that, from a coarse initial tiling of the 2D domain, enforces each of the desirable mesh quality criteria (size, shape, orientation, degree, regularity) one at a time, in an order designed not to undo previous enhancements. Our experiments demonstrate how well our resulting quadrangle meshes conform to a wide range of input sizing and orientation fields.

  6. OctMesh: un entorno de elementos finitos en Octave

    OpenAIRE

    Rodríguez Galván, José Rafael

    2007-01-01

    En este trabajo se presenta a OctMesh, un entorno de herramientas o toolbox para la resolución de ecuaciones en derivadas parciales mediante el método de los elementos finitos sobre Octave. Octave es un entorno de cálculo numérico con licencia libre que utiliza de forma nativa el lenguaje de Matlab y es altamente compatible con este. Técnicamente, OctMesh, constituye una interfaz para el acceso desde Octave a las posibilidades de libMesh, una biblioteca (también con licencia libre) para la...

  7. Engagement of Metal Debris into a Gear Mesh

    Science.gov (United States)

    Handschuh, Robert F.; Krantz, Timothy L.

    2010-01-01

    A series of bench top experiments was conducted to determine the effects of metallic debris being dragged through meshing gear teeth. A test rig that is typically used to conduct contact fatigue experiments was used for these tests. Several sizes of drill material, shim stock, and pieces of gear teeth were introduced and then driven through the meshing region. The level of torque required to drive the "chip" through the gear mesh was measured. From the data gathered, chip size sufficient to jam the mechanism can be determined.

  8. Watermarking on 3D mesh based on spherical wavelet transform

    Institute of Scientific and Technical Information of China (English)

    金剑秋; 戴敏雅; 鲍虎军; 彭群生

    2004-01-01

    In this paper we propose a robust watermarking algorithm for 3D mesh. The algorithm is based on spherical wavelet transform. Our basic idea is to decompose the original mesh into a series of details at different scales by using spherical wavelet transform; the watermark is then embedded into the different levels of details. The embedding process includes: global sphere parameterization, spherical uniform sampling, spherical wavelet forward transform, embedding watermark, spherical wavelet inverse transform, and at last resampling the mesh watermarked to recover the topological connectivity of the original model. Experiments showed that our algorithm can improve the capacity of the watermark and the robustness of watermarking against attacks.

  9. Expected Transmission Energy Route Metric for Wireless Mesh Senor Networks

    Directory of Open Access Journals (Sweden)

    YanLiang Jin

    2011-01-01

    Full Text Available Mesh is a network topology that achieves high throughput and stable intercommunication. With great potential, it is expected to be the key architecture of future networks. Wireless sensor networks are an active research area with numerous workshops and conferences arranged each year. The overall performance of a WSN highly depends on the energy consumption of the network. This paper designs a new routing metric for wireless mesh sensor networks. Results from simulation experiments reveal that the new metric algorithm improves the energy balance of the whole network and extends the lifetime of wireless mesh sensor networks (WMSNs.

  10. Procedure for the automatic mesh generation of innovative gear teeth

    Directory of Open Access Journals (Sweden)

    Radicella Andrea Chiaramonte

    2016-01-01

    Full Text Available After having described gear wheels with teeth having the two sides constituted by different involutes and their importance in engineering applications, we stress the need for an efficient procedure for the automatic mesh generation of innovative gear teeth. First, we describe the procedure for the subdivision of the tooth profile in the various possible cases, then we show the method for creating the subdivision mesh, defined by two series of curves called meridians and parallels. Finally, we describe how the above procedure for automatic mesh generation is able to solve specific cases that may arise when dealing with teeth having the two sides constituted by different involutes.

  11. Feature-preserving mesh denoising based on contextual discontinuities

    Institute of Scientific and Technical Information of China (English)

    MAO Zhi-hong; MA Li-zhuang; ZHAO Ming-xi; LI Zhong

    2006-01-01

    Motivated by the conception of Lee et al.(2005)'s mesh saliency and Chen (2005)'s contextual discontinuities, a novel adaptive smoothing approach is proposed for noise removal and feature preservation. Mesh saliency is employed as a multiscale measure to detect contextual discontinuity for feature preserving and control of the smoothing speed. The proposed method is similar to the bilateral filter method. Comparative results demonstrate the simplicity and efficiency of the presented method, which makes it an excellent solution for smoothing 3D noisy meshes.

  12. Fair packet scheduling in Wireless Mesh Networks

    KAUST Repository

    Nawab, Faisal

    2014-02-01

    In this paper we study the interactions of TCP and IEEE 802.11 MAC in Wireless Mesh Networks (WMNs). We use a Markov chain to capture the behavior of TCP sessions, particularly the impact on network throughput due to the effect of queue utilization and packet relaying. A closed form solution is derived to numerically determine the throughput. Based on the developed model, we propose a distributed MAC protocol called Timestamp-ordered MAC (TMAC), aiming to alleviate the unfairness problem in WMNs. TMAC extends CSMA/CA by scheduling data packets based on their age. Prior to transmitting a data packet, a transmitter broadcasts a request control message appended with a timestamp to a selected list of neighbors. It can proceed with the transmission only if it receives a sufficient number of grant control messages from these neighbors. A grant message indicates that the associated data packet has the lowest timestamp of all the packets pending transmission at the local transmit queue. We demonstrate that a loose ordering of timestamps among neighboring nodes is sufficient for enforcing local fairness, subsequently leading to flow rate fairness in a multi-hop WMN. We show that TMAC can be implemented using the control frames in IEEE 802.11, and thus can be easily integrated in existing 802.11-based WMNs. Our simulation results show that TMAC achieves excellent resource allocation fairness while maintaining over 90% of maximum link capacity across a large number of topologies.

  13. Multirate Anypath Routing in Wireless Mesh Networks

    CERN Document Server

    Laufer, Rafael

    2008-01-01

    In this paper, we present a new routing paradigm that generalizes opportunistic routing in wireless mesh networks. In multirate anypath routing, each node uses both a set of next hops and a selected transmission rate to reach a destination. Using this rate, a packet is broadcast to the nodes in the set and one of them forwards the packet on to the destination. To date, there is no theory capable of jointly optimizing both the set of next hops and the transmission rate used by each node. We bridge this gap by introducing a polynomial-time algorithm to this problem and provide the proof of its optimality. The proposed algorithm runs in the same running time as regular shortest-path algorithms and is therefore suitable for deployment in link-state routing protocols. We conducted experiments in a 802.11b testbed network, and our results show that multirate anypath routing performs on average 80% and up to 6.4 times better than anypath routing with a fixed rate of 11 Mbps. If the rate is fixed at 1 Mbps instead, p...

  14. Pressure Profile Calculation with Mesh Ewald Methods.

    Science.gov (United States)

    Sega, Marcello; Fábián, Balázs; Jedlovszky, Pál

    2016-09-13

    The importance of calculating pressure profiles across liquid interfaces is increasingly gaining recognition, and efficient methods for the calculation of long-range contributions are fundamental in addressing systems with a large number of charges. Here, we show how to compute the local pressure contribution for mesh-based Ewald methods, retaining the typical N log N scaling as a function of the lattice nodes N. This is a considerable improvement on existing methods, which include approximating the electrostatic contribution using a large cutoff and the, much slower, Ewald calculation. As an application, we calculate the contribution to the pressure profile across the water/vapor interface, coming from different molecular layers, both including and removing the effect of thermal capillary waves. We compare the total pressure profile with the one obtained using the cutoff approximation for the calculation of the stresses, showing that the stress distributions obtained using the Harasima and Irving-Kirkwood path are quite similar and shifted with respect to each other at most 0.05 nm. PMID:27508458

  15. Elliptic Solvers for Adaptive Mesh Refinement Grids

    Energy Technology Data Exchange (ETDEWEB)

    Quinlan, D.J.; Dendy, J.E., Jr.; Shapira, Y.

    1999-06-03

    We are developing multigrid methods that will efficiently solve elliptic problems with anisotropic and discontinuous coefficients on adaptive grids. The final product will be a library that provides for the simplified solution of such problems. This library will directly benefit the efforts of other Laboratory groups. The focus of this work is research on serial and parallel elliptic algorithms and the inclusion of our black-box multigrid techniques into this new setting. The approach applies the Los Alamos object-oriented class libraries that greatly simplify the development of serial and parallel adaptive mesh refinement applications. In the final year of this LDRD, we focused on putting the software together; in particular we completed the final AMR++ library, we wrote tutorials and manuals, and we built example applications. We implemented the Fast Adaptive Composite Grid method as the principal elliptic solver. We presented results at the Overset Grid Conference and other more AMR specific conferences. We worked on optimization of serial and parallel performance and published several papers on the details of this work. Performance remains an important issue and is the subject of continuing research work.

  16. Development of a hybrid particle-mesh method for two-phase flow simulations with phase change

    International Nuclear Information System (INIS)

    A hybrid particle-mesh method was developed for efficient and accurate simulations of two-phase flows with phase change. In this method, the CIP/MM (constrained interpolated profile/multi-moment finite volume) method is used to calculate the main part of two-phase flows, while the finite volume particle (FVP) method is applied to represent the interface between two phases based on a Lagrangian scheme. The conservation equations are first solved by CIP/MM, and then mass, velocity and energy on the mesh grid are interpolated to numerical particles, which are distributed only on the surface of liquid phase to capture the phase interface by the FVP method. The particles are also used to calculate heat and mass transfers due to phase change on the interface. The phase of each particle is determined according to its enthalpy value interpolated from mesh grids. The mesh and particle methods are combined tightly in a single numerical solution algorithm to improve numerical accuracy and stability. Two benchmark simulations of conventional 1D Stefan problem for a vapor-liquid system and horizontal film boiling behavior demonstrate that this hybrid method is potentially applicable to two-phase flow calculations with phase change occurring at moving interface. (author)

  17. Parallel adaptive mesh refinement method based on WENO finite difference scheme for the simulation of multi-dimensional detonation

    Science.gov (United States)

    Wang, Cheng; Dong, XinZhuang; Shu, Chi-Wang

    2015-10-01

    For numerical simulation of detonation, computational cost using uniform meshes is large due to the vast separation in both time and space scales. Adaptive mesh refinement (AMR) is advantageous for problems with vastly different scales. This paper aims to propose an AMR method with high order accuracy for numerical investigation of multi-dimensional detonation. A well-designed AMR method based on finite difference weighted essentially non-oscillatory (WENO) scheme, named as AMR&WENO is proposed. A new cell-based data structure is used to organize the adaptive meshes. The new data structure makes it possible for cells to communicate with each other quickly and easily. In order to develop an AMR method with high order accuracy, high order prolongations in both space and time are utilized in the data prolongation procedure. Based on the message passing interface (MPI) platform, we have developed a workload balancing parallel AMR&WENO code using the Hilbert space-filling curve algorithm. Our numerical experiments with detonation simulations indicate that the AMR&WENO is accurate and has a high resolution. Moreover, we evaluate and compare the performance of the uniform mesh WENO scheme and the parallel AMR&WENO method. The comparison results provide us further insight into the high performance of the parallel AMR&WENO method.

  18. Parameters for accurate genome alignment

    Directory of Open Access Journals (Sweden)

    Hamada Michiaki

    2010-02-01

    Full Text Available Abstract Background Genome sequence alignments form the basis of much research. Genome alignment depends on various mundane but critical choices, such as how to mask repeats and which score parameters to use. Surprisingly, there has been no large-scale assessment of these choices using real genomic data. Moreover, rigorous procedures to control the rate of spurious alignment have not been employed. Results We have assessed 495 combinations of score parameters for alignment of animal, plant, and fungal genomes. As our gold-standard of accuracy, we used genome alignments implied by multiple alignments of proteins and of structural RNAs. We found the HOXD scoring schemes underlying alignments in the UCSC genome database to be far from optimal, and suggest better parameters. Higher values of the X-drop parameter are not always better. E-values accurately indicate the rate of spurious alignment, but only if tandem repeats are masked in a non-standard way. Finally, we show that γ-centroid (probabilistic alignment can find highly reliable subsets of aligned bases. Conclusions These results enable more accurate genome alignment, with reliability measures for local alignments and for individual aligned bases. This study was made possible by our new software, LAST, which can align vertebrate genomes in a few hours http://last.cbrc.jp/.

  19. Anatomic correlations in radiogallium imaging of the peritoneum and retroperitoneum

    International Nuclear Information System (INIS)

    Radiogallium (67Ga) imaging of the abdomen and pelvis has been useful not only in detecting inflammations in these regions, but in pointing out their precise anatomic localization. Once the anatomic site is determined, it is often possible to infer the source of origin of the problem (such as ruptured viscus or pancreatitis). Interpretation of the images depends on recognition of patterns that define known anatomic boundaries such as the transverse mesocolon, root of the small mesentery, perirenal space, and pararenal space, or else show diffuse peritoneal uptake. The anatomic patterns may have continued usefulness in future studies, such as when radiolabeled leukocytes are employed to localize inflammations

  20. Do retractile testes have anatomical anomalies?

    Science.gov (United States)

    Anderson, Kleber M.; Costa, Suelen F.; Sampaio, Francisco J.B.; Favorito, Luciano A.

    2016-01-01

    ABSTRACT Objectives: To assess the incidence of anatomical anomalies in patients with retractile testis. Materials and Methods: We studied prospectively 20 patients (28 testes) with truly retractile testis and compared them with 25 human fetuses (50 testes) with testis in scrotal position. We analyzed the relations among the testis, epididymis and patency of the processus vaginalis (PV). To analyze the relations between the testis and epididymis, we used a previous classification according to epididymis attachment to the testis and the presence of epididymis atresia. To analyze the structure of the PV, we considered two situations: obliteration of the PV and patency of the PV. We used the Chi-square test for contingency analysis of the populations under study (p patent processus vaginalis and epididymal anomalies. PMID:27564294

  1. Normal anatomical measurements in cervical computerized tomography

    Energy Technology Data Exchange (ETDEWEB)

    Zaunbauer, W.; Daepp, S.; Haertel, M.

    1985-11-01

    Radiodiagnostically relevant normal values and variations for measurements of the cervical region, the arithmetical average and the standard deviation were determined from adequate computer tomograms on 60 healthy women and men, aged 20 to 83 years. The sagittal diameter of the prevertebral soft tissue and the lumina of the upper respiratory tract were evaluated at exactly defined levels between the hyoid bone and the incisura jugularis sterni. - The thickness of the aryepiglottic folds, the maximal sagittal and transverse diameters of the thyroid gland and the calibre of the great cervical vessels were defined. - To assess information about laryngeal function in computerized tomography, measurements of distances between the cervical spine and anatomical fixed points of the larynx and hypopharynx were made as well as of the degree of vocal cord movement during normal respiration and phonation.

  2. RSW Mixed Element Cell-Centered Medium Mesh

    Data.gov (United States)

    National Aeronautics and Space Administration — This RSW gridset is designed as the medium size mixed element grid for use with cell-centered unstructured meshes. UG3 : Grid File Name = rsw_med_mixedcc.b8.ugrid...

  3. RSW Fully Tet Coarse Cell-Centered Mesh

    Data.gov (United States)

    National Aeronautics and Space Administration — This is the RSW fully tetrahedral unstructured mesh dataset for a cell-centered code, including the viscous wind tunnel wall. UG3 : Grid File Name =...

  4. Analyte separation utilizing temperature programmed desorption of a preconcentrator mesh

    Science.gov (United States)

    Linker, Kevin L.; Bouchier, Frank A.; Theisen, Lisa; Arakaki, Lester H.

    2007-11-27

    A method and system for controllably releasing contaminants from a contaminated porous metallic mesh by thermally desorbing and releasing a selected subset of contaminants from a contaminated mesh by rapidly raising the mesh to a pre-determined temperature step or plateau that has been chosen beforehand to preferentially desorb a particular chemical specie of interest, but not others. By providing a sufficiently long delay or dwell period in-between heating pulses, and by selecting the optimum plateau temperatures, then different contaminant species can be controllably released in well-defined batches at different times to a chemical detector in gaseous communication with the mesh. For some detectors, such as an Ion Mobility Spectrometer (IMS), separating different species in time before they enter the IMS allows the detector to have an enhanced selectivity.

  5. A LAGUERRE VORONOI BASED SCHEME FOR MESHING PARTICLE SYSTEMS.

    Science.gov (United States)

    Bajaj, Chandrajit

    2005-06-01

    We present Laguerre Voronoi based subdivision algorithms for the quadrilateral and hexahedral meshing of particle systems within a bounded region in two and three dimensions, respectively. Particles are smooth functions over circular or spherical domains. The algorithm first breaks the bounded region containing the particles into Voronoi cells that are then subsequently decomposed into an initial quadrilateral or an initial hexahedral scaffold conforming to individual particles. The scaffolds are subsequently refined via applications of recursive subdivision (splitting and averaging rules). Our choice of averaging rules yield a particle conforming quadrilateral/hexahedral mesh, of good quality, along with being smooth and differentiable in the limit. Extensions of the basic scheme to dynamic re-meshing in the case of addition, deletion, and moving particles are also discussed. Motivating applications of the use of these static and dynamic meshes for particle systems include the mechanics of epoxy/glass composite materials, bio-molecular force field calculations, and gas hydrodynamics simulations in cosmology.

  6. ARC Code TI: Middleware Using Existing SSH Hosts (Mesh)

    Data.gov (United States)

    National Aeronautics and Space Administration — Mesh is a secure, lightweight grid middleware that is based on the addition of a single sign-on capability to the built-in public key authentication mechanism of...

  7. Method of determining dynamic retention of mesh phase separator

    OpenAIRE

    Давыдов, Сергей Александрович

    2010-01-01

    In given work the engineering design procedure of dynamic retention of mesh phase’s delimiters is presented. This allows to determine functionability of means fuel continuity support in dynamic conditions at a stage of outline designing.

  8. Quality Tetrahedral Mesh Smoothing via Boundary-Optimized Delaunay Triangulation.

    Science.gov (United States)

    Gao, Zhanheng; Yu, Zeyun; Holst, Michael

    2012-12-01

    Despite its great success in improving the quality of a tetrahedral mesh, the original optimal Delaunay triangulation (ODT) is designed to move only inner vertices and thus cannot handle input meshes containing "bad" triangles on boundaries. In the current work, we present an integrated approach called boundary-optimized Delaunay triangulation (B-ODT) to smooth (improve) a tetrahedral mesh. In our method, both inner and boundary vertices are repositioned by analytically minimizing the error between a paraboloid function and its piecewise linear interpolation over the neighborhood of each vertex. In addition to the guaranteed volume-preserving property, the proposed algorithm can be readily adapted to preserve sharp features in the original mesh. A number of experiments are included to demonstrate the performance of our method.

  9. On the Support of Multimedia Applications over Wireless Mesh Networks

    Directory of Open Access Journals (Sweden)

    Chemseddine BEMMOUSSAT

    2013-05-01

    Full Text Available For next generation wireless networks, supporting quality of service (QoS in multimedia application likevideo, streaming and voice over IP is a necessary and critical requirement. Wireless Mesh Networking isenvisioned as a solution for next networks generation and a promising technology for supportingmultimedia application.With decreasing the numbers of mesh clients, QoS will increase automatically. Several research arefocused to improve QoS in Wireless Mesh networks (WMNs, they try to improve a basics algorithm, likerouting protocols or one of example of canal access, but in moments it no sufficient to ensure a robustsolution to transport multimedia application over WMNs.In this paper we propose an efficient routing algorithm for multimedia transmission in the mesh networkand an approach of QoS in the MAC layer for facilitated transport video over the network studied.

  10. Constructing C1 Continuous Surface on Irregular Quad Meshes

    Institute of Scientific and Technical Information of China (English)

    HE Jun; GUO Qiang

    2013-01-01

    A new method is proposed for surface construction on irregular quad meshes as extensions to uniform B-spline surfaces. Given a number of control points, which form a regular or irregular quad mesh, a weight function is constructed for each control point. The weight function is defined on a local domain and is C1 continuous. Then the whole surface is constructed by the weighted combination of all the control points. The property of the new method is that the surface is defined by piecewise C1 bi-cubic rational parametric polynomial with each quad face. It is an extension to uniform B-spline surfaces in the sense that its definition is an analogy of the B-spline surface, and it produces a uniform bi-cubic B-spline surface if the control mesh is a regular quad mesh. Examples produced by the new method are also included.

  11. Form-finding with polyhedral meshes made simple

    KAUST Repository

    Tang, Chengcheng

    2014-07-27

    We solve the form-finding problem for polyhedral meshes in a way which combines form, function and fabrication; taking care of user-specified constraints like boundary interpolation, planarity of faces, statics, panel size and shape, enclosed volume, and last, but not least, cost. Our main application is the interactive modeling of meshes for architectural and industrial design. Our approach can be described as guided exploration of the constraint space whose algebraic structure is simplified by introducing auxiliary variables and ensuring that constraints are at most quadratic. Computationally, we perform a projection onto the constraint space which is biased towards low values of an energy which expresses desirable "soft" properties like fairness. We have created a tool which elegantly handles difficult tasks, such as taking boundary-alignment of polyhedral meshes into account, planarization, fairing under planarity side conditions, handling hybrid meshes, and extending the treatment of static equilibrium to shapes which possess overhanging parts.

  12. Design and Implementation of the MESH Services Platform

    NARCIS (Netherlands)

    Batteram, Harold J.; Bakker, John-Luc; Verhoosel, Jack P.C.; Diakov, Nikolay K.

    1999-01-01

    Industry acceptance of TINA (Telecommunications Information Networking Architecture) will depend heavily on both the evaluation of working systems that implement this architecture, and on the experiences obtained during the design and implementation of these systems. During the MESH' (Multimedia ser

  13. Self-organizing mesh network of android devices

    OpenAIRE

    Rui Miguel Ribeiro Archer

    2013-01-01

    Extension of existing android software to allow a mesh network of android devices to self-configure and start applications on top of it. Survey of current capabilities and analysis of network impact of used protocols.

  14. Accurate ab initio spin densities

    CERN Document Server

    Boguslawski, Katharina; Legeza, Örs; Reiher, Markus

    2012-01-01

    We present an approach for the calculation of spin density distributions for molecules that require very large active spaces for a qualitatively correct description of their electronic structure. Our approach is based on the density-matrix renormalization group (DMRG) algorithm to calculate the spin density matrix elements as basic quantity for the spatially resolved spin density distribution. The spin density matrix elements are directly determined from the second-quantized elementary operators optimized by the DMRG algorithm. As an analytic convergence criterion for the spin density distribution, we employ our recently developed sampling-reconstruction scheme [J. Chem. Phys. 2011, 134, 224101] to build an accurate complete-active-space configuration-interaction (CASCI) wave function from the optimized matrix product states. The spin density matrix elements can then also be determined as an expectation value employing the reconstructed wave function expansion. Furthermore, the explicit reconstruction of a CA...

  15. The Accurate Particle Tracer Code

    CERN Document Server

    Wang, Yulei; Qin, Hong; Yu, Zhi

    2016-01-01

    The Accurate Particle Tracer (APT) code is designed for large-scale particle simulations on dynamical systems. Based on a large variety of advanced geometric algorithms, APT possesses long-term numerical accuracy and stability, which are critical for solving multi-scale and non-linear problems. Under the well-designed integrated and modularized framework, APT serves as a universal platform for researchers from different fields, such as plasma physics, accelerator physics, space science, fusion energy research, computational mathematics, software engineering, and high-performance computation. The APT code consists of seven main modules, including the I/O module, the initialization module, the particle pusher module, the parallelization module, the field configuration module, the external force-field module, and the extendible module. The I/O module, supported by Lua and Hdf5 projects, provides a user-friendly interface for both numerical simulation and data analysis. A series of new geometric numerical methods...

  16. Accurate thickness measurement of graphene

    Science.gov (United States)

    Shearer, Cameron J.; Slattery, Ashley D.; Stapleton, Andrew J.; Shapter, Joseph G.; Gibson, Christopher T.

    2016-03-01

    Graphene has emerged as a material with a vast variety of applications. The electronic, optical and mechanical properties of graphene are strongly influenced by the number of layers present in a sample. As a result, the dimensional characterization of graphene films is crucial, especially with the continued development of new synthesis methods and applications. A number of techniques exist to determine the thickness of graphene films including optical contrast, Raman scattering and scanning probe microscopy techniques. Atomic force microscopy (AFM), in particular, is used extensively since it provides three-dimensional images that enable the measurement of the lateral dimensions of graphene films as well as the thickness, and by extension the number of layers present. However, in the literature AFM has proven to be inaccurate with a wide range of measured values for single layer graphene thickness reported (between 0.4 and 1.7 nm). This discrepancy has been attributed to tip-surface interactions, image feedback settings and surface chemistry. In this work, we use standard and carbon nanotube modified AFM probes and a relatively new AFM imaging mode known as PeakForce tapping mode to establish a protocol that will allow users to accurately determine the thickness of graphene films. In particular, the error in measuring the first layer is reduced from 0.1-1.3 nm to 0.1-0.3 nm. Furthermore, in the process we establish that the graphene-substrate adsorbate layer and imaging force, in particular the pressure the tip exerts on the surface, are crucial components in the accurate measurement of graphene using AFM. These findings can be applied to other 2D materials.

  17. Accurate thickness measurement of graphene.

    Science.gov (United States)

    Shearer, Cameron J; Slattery, Ashley D; Stapleton, Andrew J; Shapter, Joseph G; Gibson, Christopher T

    2016-03-29

    Graphene has emerged as a material with a vast variety of applications. The electronic, optical and mechanical properties of graphene are strongly influenced by the number of layers present in a sample. As a result, the dimensional characterization of graphene films is crucial, especially with the continued development of new synthesis methods and applications. A number of techniques exist to determine the thickness of graphene films including optical contrast, Raman scattering and scanning probe microscopy techniques. Atomic force microscopy (AFM), in particular, is used extensively since it provides three-dimensional images that enable the measurement of the lateral dimensions of graphene films as well as the thickness, and by extension the number of layers present. However, in the literature AFM has proven to be inaccurate with a wide range of measured values for single layer graphene thickness reported (between 0.4 and 1.7 nm). This discrepancy has been attributed to tip-surface interactions, image feedback settings and surface chemistry. In this work, we use standard and carbon nanotube modified AFM probes and a relatively new AFM imaging mode known as PeakForce tapping mode to establish a protocol that will allow users to accurately determine the thickness of graphene films. In particular, the error in measuring the first layer is reduced from 0.1-1.3 nm to 0.1-0.3 nm. Furthermore, in the process we establish that the graphene-substrate adsorbate layer and imaging force, in particular the pressure the tip exerts on the surface, are crucial components in the accurate measurement of graphene using AFM. These findings can be applied to other 2D materials.

  18. Improving spatial localization in MEG inverse imaging by leveraging intersubject anatomical differences

    Directory of Open Access Journals (Sweden)

    Eric eLarson

    2014-10-01

    Full Text Available Modern neuroimaging techniques enable non-invasive observation of ongoing neural processing, with magnetoencephalography (MEG in particular providing direct measurement of neural activity with millisecond time resolution. However, accurately mapping measured MEG sensor readings onto the underlying source neural structures remains an active area of research. This so-called inverse problem is ill posed, and poses a challenge for source estimation that is often cited as a drawback limiting MEG data interpretation. However, anatomically constrained MEG localization estimates may be more accurate than commonly believed. Here we hypothesize that, by combining anatomically constrained inverse estimates across subjects, the spatial uncertainty of MEG source localization can be mitigated. Specifically, we argue that differences in subject brain geometry yield differences in point-spread functions, resulting in improved spatial localization across subjects. To test this, we use standard methods to combine subject anatomical MRI scans with coregistration information to obtain an accurate forward (physical solution, modeling the MEG sensor data resulting from brain activity originating from different cortical locations. Using a linear minimum-norm inverse to localize this brain activity, we demonstrate that a substantial increase in the spatial accuracy of MEG source localization can result from combining data from subjects with differing brain geometry. This improvement may be enabled by an increase in the amount of available spatial information in MEG data as measurements from different subjects are combined. This approach becomes more important in the face of practical issues of coregistration errors and potential noise sources, where we observe even larger improvements in localization when combining data across subjects. Finally, we use a simple auditory N100(m localization task to show how this effect can influence localization using a recorded neural

  19. Finite element meshing approached as a global minimization process

    Energy Technology Data Exchange (ETDEWEB)

    WITKOWSKI,WALTER R.; JUNG,JOSEPH; DOHRMANN,CLARK R.; LEUNG,VITUS J.

    2000-03-01

    The ability to generate a suitable finite element mesh in an automatic fashion is becoming the key to being able to automate the entire engineering analysis process. However, placing an all-hexahedron mesh in a general three-dimensional body continues to be an elusive goal. The approach investigated in this research is fundamentally different from any other that is known of by the authors. A physical analogy viewpoint is used to formulate the actual meshing problem which constructs a global mathematical description of the problem. The analogy used was that of minimizing the electrical potential of a system charged particles within a charged domain. The particles in the presented analogy represent duals to mesh elements (i.e., quads or hexes). Particle movement is governed by a mathematical functional which accounts for inter-particles repulsive, attractive and alignment forces. This functional is minimized to find the optimal location and orientation of each particle. After the particles are connected a mesh can be easily resolved. The mathematical description for this problem is as easy to formulate in three-dimensions as it is in two- or one-dimensions. The meshing algorithm was developed within CoMeT. It can solve the two-dimensional meshing problem for convex and concave geometries in a purely automated fashion. Investigation of the robustness of the technique has shown a success rate of approximately 99% for the two-dimensional geometries tested. Run times to mesh a 100 element complex geometry were typically in the 10 minute range. Efficiency of the technique is still an issue that needs to be addressed. Performance is an issue that is critical for most engineers generating meshes. It was not for this project. The primary focus of this work was to investigate and evaluate a meshing algorithm/philosophy with efficiency issues being secondary. The algorithm was also extended to mesh three-dimensional geometries. Unfortunately, only simple geometries were tested

  20. Design methodology of the strength properties of medical knitted meshes

    Science.gov (United States)

    Mikołajczyk, Z.; Walkowska, A.

    2016-07-01

    One of the most important utility properties of medical knitted meshes intended for hernia and urological treatment is their bidirectional strength along the courses and wales. The value of this parameter, expected by the manufacturers and surgeons, is estimated at 100 N per 5 cm of the sample width. The most frequently, these meshes are produced on the basis of single- or double-guide stitches. They are made of polypropylene and polyester monofilament yarns with the diameter in the range from 0.6 to 1.2 mm, characterized by a high medical purity. The aim of the study was to develop the design methodology of meshes strength based on the geometrical construction of the stitch and strength of yarn. In the environment of the ProCAD warpknit 5 software the simulated stretching process of meshes together with an analysis of their geometry changes was carried out. Simulations were made for four selected representative stitches. Both on a built, unique measuring position and on the tensile testing machine the real parameters of the loops geometry of meshes were measured. Model of mechanical stretching of warp-knitted meshes along the courses and wales was developed. The thesis argument was made, that the force that breaks the loop of warp-knitted fabric is the lowest value of breaking forces of loop link yarns or yarns that create straight sections of loop. This thesis was associate with the theory of strength that uses the “the weakest link concept”. Experimental verification of model was carried out for the basic structure of the single-guide mesh. It has been shown that the real, relative strength of the mesh related to one course is equal to the strength of the yarn breakage in a loop, while the strength along the wales is close to breaking strength of a single yarn. In relation to the specific construction of the medical mesh, based on the knowledge of the density of the loops structure, the a-jour mesh geometry and the yarns strength, it is possible, with high