WorldWideScience

Sample records for analysis software suite

  1. The ESA's Space Trajectory Analysis software suite

    Science.gov (United States)

    Ortega, Guillermo

    The European Space Agency (ESA) initiated in 2005 an internal activity to develop an open source software suite involving university science departments and research institutions all over the world. This project is called the "Space Trajectory Analysis" or STA. This article describes the birth of STA and its present configuration. One of the STA aims is to promote the exchange of technical ideas, and raise knowledge and competence in the areas of applied mathematics, space engineering, and informatics at University level. Conceived as a research and education tool to support the analysis phase of a space mission, STA is able to visualize a wide range of space trajectories. These include among others ascent, re-entry, descent and landing trajectories, orbits around planets and moons, interplanetary trajectories, rendezvous trajectories, etc. The article explains that STA project is an original idea of the Technical Directorate of ESA. It was born in August 2005 to provide a framework in astrodynamics research at University level. As research and education software applicable to Academia, a number of Universities support this development by joining ESA in leading the development. ESA and Universities partnership are expressed in the STA Steering Board. Together with ESA, each University has a chair in the board whose tasks are develop, control, promote, maintain, and expand the software suite. The article describes that STA provides calculations in the fields of spacecraft tracking, attitude analysis, coverage and visibility analysis, orbit determination, position and velocity of solar system bodies, etc. STA implements the concept of "space scenario" composed of Solar system bodies, spacecraft, ground stations, pads, etc. It is able to propagate the orbit of a spacecraft where orbital propagators are included. STA is able to compute communication links between objects of a scenario (coverage, line of sight), and to represent the trajectory computations and

  2. Freud: a software suite for high-throughput simulation analysis

    Science.gov (United States)

    Harper, Eric; Spellings, Matthew; Anderson, Joshua; Glotzer, Sharon

    Computer simulation is an indispensable tool for the study of a wide variety of systems. As simulations scale to fill petascale and exascale supercomputing clusters, so too does the size of the data produced, as well as the difficulty in analyzing these data. We present Freud, an analysis software suite for efficient analysis of simulation data. Freud makes no assumptions about the system being analyzed, allowing for general analysis methods to be applied to nearly any type of simulation. Freud includes standard analysis methods such as the radial distribution function, as well as new methods including the potential of mean force and torque and local crystal environment analysis. Freud combines a Python interface with fast, parallel C + + analysis routines to run efficiently on laptops, workstations, and supercomputing clusters. Data analysis on clusters reduces data transfer requirements, a prohibitive cost for petascale computing. Used in conjunction with simulation software, Freud allows for smart simulations that adapt to the current state of the system, enabling the study of phenomena such as nucleation and growth, intelligent investigation of phases and phase transitions, and determination of effective pair potentials.

  3. eXtended CASA Line Analysis Software Suite (XCLASS)

    Science.gov (United States)

    Möller, T.; Endres, C.; Schilke, P.

    2017-02-01

    The eXtended CASA Line Analysis Software Suite (XCLASS) is a toolbox for the Common Astronomy Software Applications package (CASA) containing new functions for modeling interferometric and single dish data. Among the tools is the myXCLASS program which calculates synthetic spectra by solving the radiative transfer equation for an isothermal object in one dimension, whereas the finite source size and dust attenuation are considered as well. Molecular data required by the myXCLASS program are taken from an embedded SQLite3 database containing entries from the Cologne Database for Molecular Spectroscopy (CDMS) and JPL using the Virtual Atomic and Molecular Data Center (VAMDC) portal. Additionally, the toolbox provides an interface for the model optimizer package Modeling and Analysis Generic Interface for eXternal numerical codes (MAGIX), which helps to find the best description of observational data using myXCLASS (or another external model program), that is, finding the parameter set that most closely reproduces the data. http://www.astro.uni-koeln.de/projects/schilke/myXCLASSInterface A copy of the code is available at the CDS via anonymous ftp to http://cdsarc.u-strasbg.fr (http://130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/598/A7

  4. CLMSVault: A Software Suite for Protein Cross-Linking Mass-Spectrometry Data Analysis and Visualization.

    Science.gov (United States)

    Courcelles, Mathieu; Coulombe-Huntington, Jasmin; Cossette, Émilie; Gingras, Anne-Claude; Thibault, Pierre; Tyers, Mike

    2017-07-07

    Protein cross-linking mass spectrometry (CL-MS) enables the sensitive detection of protein interactions and the inference of protein complex topology. The detection of chemical cross-links between protein residues can identify intra- and interprotein contact sites or provide physical constraints for molecular modeling of protein structure. Recent innovations in cross-linker design, sample preparation, mass spectrometry, and software tools have significantly improved CL-MS approaches. Although a number of algorithms now exist for the identification of cross-linked peptides from mass spectral data, a dearth of user-friendly analysis tools represent a practical bottleneck to the broad adoption of the approach. To facilitate the analysis of CL-MS data, we developed CLMSVault, a software suite designed to leverage existing CL-MS algorithms and provide intuitive and flexible tools for cross-platform data interpretation. CLMSVault stores and combines complementary information obtained from different cross-linkers and search algorithms. CLMSVault provides filtering, comparison, and visualization tools to support CL-MS analyses and includes a workflow for label-free quantification of cross-linked peptides. An embedded 3D viewer enables the visualization of quantitative data and the mapping of cross-linked sites onto PDB structural models. We demonstrate the application of CLMSVault for the analysis of a noncovalent Cdc34-ubiquitin protein complex cross-linked under different conditions. CLMSVault is open-source software (available at https://gitlab.com/courcelm/clmsvault.git ), and a live demo is available at http://democlmsvault.tyerslab.com/ .

  5. The BTeV Software Tutorial Suite

    International Nuclear Information System (INIS)

    Kutschke, Robert K.

    2004-01-01

    The BTeV Collaboration is starting to develop its C++ based offline software suite, an integral part of which is a series of tutorials. These tutorials are targeted at a diverse audience, including new graduate students, experienced physicists with little or no C++ experience, those with just enough C++ to be dangerous, and experts who need only an overview of the available tools. The tutorials must both teach C++ in general and the BTeV specific tools in particular. Finally, they must teach physicists how to find and use the detailed documentation. This report will review the status of the BTeV experiment, give an overview of the plans for and the state of the software and will then describe the plans for the tutorial suite

  6. MODEL: A software suite for data acquisition

    Energy Technology Data Exchange (ETDEWEB)

    Sendall, D M; Boissat, C; Bozzoli, W; Burkimsher, P; Jones, R; Matheys, J P; Mornacchi, G; Nguyen, T; Vyvre, P vande; Vascotto, A; Weaver, D [European Organization for Nuclear Research, Geneva (Switzerland). DD Div.

    1989-12-01

    MODEL is a new suite of modular data-acquisition software. It is aimed at the needs of LEP experiments, and is also general enough to be more widely used. It can accomodate a variety of users styles. It runs on a set of loosely coupled processors, and makes use of the remote procedure call technique. Implemented originally for the VAX family, some of its services have already been extended to other systems, including embedded microprocessors. The software modules available include facilities for data-flow management, a framework for monitoring programs, a window-oriented human interface, an error message utility, a process control utility and a run control scheme. It is already in use in a variety of experiments, and is still under development in the light of user experience. (orig.).

  7. Engineering Software Suite Validates System Design

    Science.gov (United States)

    2007-01-01

    EDAptive Computing Inc.'s (ECI) EDAstar engineering software tool suite, created to capture and validate system design requirements, was significantly funded by NASA's Ames Research Center through five Small Business Innovation Research (SBIR) contracts. These programs specifically developed Syscape, used to capture executable specifications of multi-disciplinary systems, and VectorGen, used to automatically generate tests to ensure system implementations meet specifications. According to the company, the VectorGen tests considerably reduce the time and effort required to validate implementation of components, thereby ensuring their safe and reliable operation. EDASHIELD, an additional product offering from ECI, can be used to diagnose, predict, and correct errors after a system has been deployed using EDASTAR -created models. Initial commercialization for EDASTAR included application by a large prime contractor in a military setting, and customers include various branches within the U.S. Department of Defense, industry giants like the Lockheed Martin Corporation, Science Applications International Corporation, and Ball Aerospace and Technologies Corporation, as well as NASA's Langley and Glenn Research Centers

  8. Improvements to the APBS biomolecular solvation software suite: Improvements to the APBS Software Suite

    Energy Technology Data Exchange (ETDEWEB)

    Jurrus, Elizabeth [Pacific Northwest National Laboratory, Richland Washington; Engel, Dave [Pacific Northwest National Laboratory, Richland Washington; Star, Keith [Pacific Northwest National Laboratory, Richland Washington; Monson, Kyle [Pacific Northwest National Laboratory, Richland Washington; Brandi, Juan [Pacific Northwest National Laboratory, Richland Washington; Felberg, Lisa E. [University of California, Berkeley California; Brookes, David H. [University of California, Berkeley California; Wilson, Leighton [University of Michigan, Ann Arbor Michigan; Chen, Jiahui [Southern Methodist University, Dallas Texas; Liles, Karina [Pacific Northwest National Laboratory, Richland Washington; Chun, Minju [Pacific Northwest National Laboratory, Richland Washington; Li, Peter [Pacific Northwest National Laboratory, Richland Washington; Gohara, David W. [St. Louis University, St. Louis Missouri; Dolinsky, Todd [FoodLogiQ, Durham North Carolina; Konecny, Robert [University of California San Diego, San Diego California; Koes, David R. [University of Pittsburgh, Pittsburgh Pennsylvania; Nielsen, Jens Erik [Protein Engineering, Novozymes A/S, Copenhagen Denmark; Head-Gordon, Teresa [University of California, Berkeley California; Geng, Weihua [Southern Methodist University, Dallas Texas; Krasny, Robert [University of Michigan, Ann Arbor Michigan; Wei, Guo-Wei [Michigan State University, East Lansing Michigan; Holst, Michael J. [University of California San Diego, San Diego California; McCammon, J. Andrew [University of California San Diego, San Diego California; Baker, Nathan A. [Pacific Northwest National Laboratory, Richland Washington; Brown University, Providence Rhode Island

    2017-10-24

    The Adaptive Poisson-Boltzmann Solver (APBS) software was developed to solve the equations of continuum electrostatics for large biomolecular assemblages that has provided impact in the study of a broad range of chemical, biological, and biomedical applications. APBS addresses three key technology challenges for understanding solvation and electrostatics in biomedical applications: accurate and efficient models for biomolecular solvation and electrostatics, robust and scalable software for applying those theories to biomolecular systems, and mechanisms for sharing and analyzing biomolecular electrostatics data in the scientific community. To address new research applications and advancing computational capabilities, we have continually updated APBS and its suite of accompanying software since its release in 2001. In this manuscript, we discuss the models and capabilities that have recently been implemented within the APBS software package including: a Poisson-Boltzmann analytical and a semi-analytical solver, an optimized boundary element solver, a geometry-based geometric flow solvation model, a graph theory based algorithm for determining pKa values, and an improved web-based visualization tool for viewing electrostatics.

  9. Strengthening Software Authentication with the ROSE Software Suite

    International Nuclear Information System (INIS)

    White, G

    2006-01-01

    Many recent nonproliferation and arms control software projects include a software authentication regime. These include U.S. Government-sponsored projects both in the United States and in the Russian Federation (RF). This trend toward requiring software authentication is only accelerating. Demonstrating assurance that software performs as expected without hidden ''backdoors'' is crucial to a project's success. In this context, ''authentication'' is defined as determining that a software package performs only its intended purpose and performs said purpose correctly and reliably over the planned duration of an agreement. In addition to visual inspections by knowledgeable computer scientists, automated tools are needed to highlight suspicious code constructs, both to aid visual inspection and to guide program development. While many commercial tools are available for portions of the authentication task, they are proprietary and not extensible. An open-source, extensible tool can be customized to the unique needs of each project (projects can have both common and custom rules to detect flaws and security holes). Any such extensible tool has to be based on a complete language compiler. ROSE is precisely such a compiler infrastructure developed within the Department of Energy (DOE) and targeted at the optimization of scientific applications and user-defined libraries within large-scale applications (typically applications of a million lines of code). ROSE is a robust, source-to-source analysis and optimization infrastructure currently addressing large, million-line DOE applications in C and C++ (handling the full C, C99, C++ languages and with current collaborations to support Fortran90). We propose to extend ROSE to address a number of security-specific requirements, and apply it to software authentication for nonproliferation and arms control projects

  10. CAMEO (Computer-Aided Management of Emergency Operations) Software Suite

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — CAMEO is the umbrella name for a system of software applications used widely to plan for and respond to chemical emergencies. All of the programs in the suite work...

  11. Tier-3 Monitoring Software Suite (T3MON) proposal

    CERN Document Server

    Andreeva, J; The ATLAS collaboration; Klimentov, A; Korenkov, V; Oleynik, D; Panitkin, S; Petrosyan, A

    2011-01-01

    The ATLAS Distributed Computing activities concentrated so far in the “central” part of the computing system of the experiment, namely the first 3 tiers (CERN Tier0, the 10 Tier1s centres and the 60+ Tier2s). This is a coherent system to perform data processing and management on a global scale and host (re)processing, simulation activities down to group and user analysis. Many ATLAS Institutes and National Communities built (or have plans to build) Tier-3 facilities. The definition of Tier-3 concept has been outlined (REFERENCE). Tier-3 centres consist of non-pledged resources mostly dedicated for the data analysis by the geographically close or local scientific groups. Tier-3 sites comprise a range of architectures and many do not possess Grid middleware, which would render application of Tier-2 monitoring systems useless. This document describes a strategy to develop a software suite for monitoring of the Tier3 sites. This software suite will enable local monitoring of the Tier3 sites and the global vie...

  12. Controlatron Neutron Tube Test Suite Software Manual - Operation Manual (V2.2)

    CERN Document Server

    Noel, W P; Hertrich, R J; Martinez, M L; Wallace, D L

    2002-01-01

    The Controlatron Software Suite is a custom built application to perform automated testing of Controlatron neutron tubes. The software package was designed to allowing users to design tests and to run a series of test suites on a tube. The data is output to ASCII files of a pre-defined format for data analysis and viewing with the Controlatron Data Viewer Application. This manual discusses the operation of the Controlatron Test Suite Software and a brief discussion of state machine theory, as state machine is the functional basis of the software.

  13. Extending and Enhancing SAS (Static Analysis Suite)

    CERN Document Server

    Ho, David

    2016-01-01

    The Static Analysis Suite (SAS) is an open-source software package used to perform static analysis on C and C++ code, helping to ensure safety, readability and maintainability. In this Summer Student project, SAS was enhanced to improve ease of use and user customisation. A straightforward method of integrating static analysis into a project at compilation time was provided using the automated build tool CMake. The process of adding checkers to the suite was streamlined and simplied by developing an automatic code generator. To make SAS more suitable for continuous integration, a reporting mechanism summarising results was added. This suitability has been demonstrated by inclusion of SAS in the Future Circular Collider Software nightly build system. Scalability of the improved package was demonstrated by using the tool to analyse the ROOT code base.

  14. NGSUtils: a software suite for analyzing and manipulating next-generation sequencing datasets

    OpenAIRE

    Breese, Marcus R.; Liu, Yunlong

    2013-01-01

    Summary: NGSUtils is a suite of software tools for manipulating data common to next-generation sequencing experiments, such as FASTQ, BED and BAM format files. These tools provide a stable and modular platform for data management and analysis.

  15. Knowledge Architect : A Tool Suite for Managing Software Architecture Knowledge

    NARCIS (Netherlands)

    Liang, Peng; Jansen, Anton; Avgeriou, Paris

    2009-01-01

    Management of software architecture knowledge (AK) is vital for improving an organization’s architectural capabilities. To support the architecting process within our industrial partner: Astron, the Dutch radio astronomy institute, we implemented the Knowledge Architect (KA): a tool suite for

  16. Approaches in highly parameterized inversion—PEST++ Version 3, a Parameter ESTimation and uncertainty analysis software suite optimized for large environmental models

    Science.gov (United States)

    Welter, David E.; White, Jeremy T.; Hunt, Randall J.; Doherty, John E.

    2015-09-18

    The PEST++ Version 1 object-oriented parameter estimation code is here extended to Version 3 to incorporate additional algorithms and tools to further improve support for large and complex environmental modeling problems. PEST++ Version 3 includes the Gauss-Marquardt-Levenberg (GML) algorithm for nonlinear parameter estimation, Tikhonov regularization, integrated linear-based uncertainty quantification, options of integrated TCP/IP based parallel run management or external independent run management by use of a Version 2 update of the GENIE Version 1 software code, and utilities for global sensitivity analyses. The Version 3 code design is consistent with PEST++ Version 1 and continues to be designed to lower the barriers of entry for users as well as developers while providing efficient and optimized algorithms capable of accommodating large, highly parameterized inverse problems. As such, this effort continues the original focus of (1) implementing the most popular and powerful features of the PEST software suite in a fashion that is easy for novice or experienced modelers to use and (2) developing a software framework that is easy to extend.

  17. Improvements to the APBS biomolecular solvation software suite.

    Science.gov (United States)

    Jurrus, Elizabeth; Engel, Dave; Star, Keith; Monson, Kyle; Brandi, Juan; Felberg, Lisa E; Brookes, David H; Wilson, Leighton; Chen, Jiahui; Liles, Karina; Chun, Minju; Li, Peter; Gohara, David W; Dolinsky, Todd; Konecny, Robert; Koes, David R; Nielsen, Jens Erik; Head-Gordon, Teresa; Geng, Weihua; Krasny, Robert; Wei, Guo-Wei; Holst, Michael J; McCammon, J Andrew; Baker, Nathan A

    2018-01-01

    The Adaptive Poisson-Boltzmann Solver (APBS) software was developed to solve the equations of continuum electrostatics for large biomolecular assemblages that have provided impact in the study of a broad range of chemical, biological, and biomedical applications. APBS addresses the three key technology challenges for understanding solvation and electrostatics in biomedical applications: accurate and efficient models for biomolecular solvation and electrostatics, robust and scalable software for applying those theories to biomolecular systems, and mechanisms for sharing and analyzing biomolecular electrostatics data in the scientific community. To address new research applications and advancing computational capabilities, we have continually updated APBS and its suite of accompanying software since its release in 2001. In this article, we discuss the models and capabilities that have recently been implemented within the APBS software package including a Poisson-Boltzmann analytical and a semi-analytical solver, an optimized boundary element solver, a geometry-based geometric flow solvation model, a graph theory-based algorithm for determining pK a values, and an improved web-based visualization tool for viewing electrostatics. © 2017 The Protein Society.

  18. SSAGES: Software Suite for Advanced General Ensemble Simulations

    Science.gov (United States)

    Sidky, Hythem; Colón, Yamil J.; Helfferich, Julian; Sikora, Benjamin J.; Bezik, Cody; Chu, Weiwei; Giberti, Federico; Guo, Ashley Z.; Jiang, Xikai; Lequieu, Joshua; Li, Jiyuan; Moller, Joshua; Quevillon, Michael J.; Rahimi, Mohammad; Ramezani-Dakhel, Hadi; Rathee, Vikramjit S.; Reid, Daniel R.; Sevgen, Emre; Thapar, Vikram; Webb, Michael A.; Whitmer, Jonathan K.; de Pablo, Juan J.

    2018-01-01

    Molecular simulation has emerged as an essential tool for modern-day research, but obtaining proper results and making reliable conclusions from simulations requires adequate sampling of the system under consideration. To this end, a variety of methods exist in the literature that can enhance sampling considerably, and increasingly sophisticated, effective algorithms continue to be developed at a rapid pace. Implementation of these techniques, however, can be challenging for experts and non-experts alike. There is a clear need for software that provides rapid, reliable, and easy access to a wide range of advanced sampling methods and that facilitates implementation of new techniques as they emerge. Here we present SSAGES, a publicly available Software Suite for Advanced General Ensemble Simulations designed to interface with multiple widely used molecular dynamics simulations packages. SSAGES allows facile application of a variety of enhanced sampling techniques—including adaptive biasing force, string methods, and forward flux sampling—that extract meaningful free energy and transition path data from all-atom and coarse-grained simulations. A noteworthy feature of SSAGES is a user-friendly framework that facilitates further development and implementation of new methods and collective variables. In this work, the use of SSAGES is illustrated in the context of simple representative applications involving distinct methods and different collective variables that are available in the current release of the suite. The code may be found at: https://github.com/MICCoM/SSAGES-public.

  19. SSAGES: Software Suite for Advanced General Ensemble Simulations

    Energy Technology Data Exchange (ETDEWEB)

    Sidky, Hythem [Department of Chemical and Biomolecular Engineering, University of Notre Dame, Notre Dame, Indiana 46556, USA; Colón, Yamil J. [Institute for Molecular Engineering, University of Chicago, Chicago, Illinois 60637, USA; Institute for Molecular Engineering and Materials Science Division, Argonne National Laboratory, Lemont, Illinois 60439, USA; Helfferich, Julian [Institute for Molecular Engineering, University of Chicago, Chicago, Illinois 60637, USA; Steinbuch Center for Computing, Karlsruhe Institute of Technology, Hermann-von-Helmholtz-Platz 1, 76344 Eggenstein-Leopoldshafen, Germany; Sikora, Benjamin J. [Department of Chemical and Biomolecular Engineering, University of Notre Dame, Notre Dame, Indiana 46556, USA; Bezik, Cody [Institute for Molecular Engineering, University of Chicago, Chicago, Illinois 60637, USA; Chu, Weiwei [Institute for Molecular Engineering, University of Chicago, Chicago, Illinois 60637, USA; Giberti, Federico [Institute for Molecular Engineering, University of Chicago, Chicago, Illinois 60637, USA; Guo, Ashley Z. [Institute for Molecular Engineering, University of Chicago, Chicago, Illinois 60637, USA; Jiang, Xikai [Institute for Molecular Engineering, University of Chicago, Chicago, Illinois 60637, USA; Lequieu, Joshua [Institute for Molecular Engineering, University of Chicago, Chicago, Illinois 60637, USA; Li, Jiyuan [Institute for Molecular Engineering, University of Chicago, Chicago, Illinois 60637, USA; Moller, Joshua [Institute for Molecular Engineering, University of Chicago, Chicago, Illinois 60637, USA; Quevillon, Michael J. [Department of Chemical and Biomolecular Engineering, University of Notre Dame, Notre Dame, Indiana 46556, USA; Rahimi, Mohammad [Institute for Molecular Engineering, University of Chicago, Chicago, Illinois 60637, USA; Ramezani-Dakhel, Hadi [Institute for Molecular Engineering, University of Chicago, Chicago, Illinois 60637, USA; Department of Biochemistry and Molecular Biology, University of Chicago, Chicago, Illinois 60637, USA; Rathee, Vikramjit S. [Department of Chemical and Biomolecular Engineering, University of Notre Dame, Notre Dame, Indiana 46556, USA; Reid, Daniel R. [Institute for Molecular Engineering, University of Chicago, Chicago, Illinois 60637, USA; Sevgen, Emre [Institute for Molecular Engineering, University of Chicago, Chicago, Illinois 60637, USA; Thapar, Vikram [Institute for Molecular Engineering, University of Chicago, Chicago, Illinois 60637, USA; Webb, Michael A. [Institute for Molecular Engineering, University of Chicago, Chicago, Illinois 60637, USA; Institute for Molecular Engineering and Materials Science Division, Argonne National Laboratory, Lemont, Illinois 60439, USA; Whitmer, Jonathan K. [Department of Chemical and Biomolecular Engineering, University of Notre Dame, Notre Dame, Indiana 46556, USA; de Pablo, Juan J. [Institute for Molecular Engineering, University of Chicago, Chicago, Illinois 60637, USA; Institute for Molecular Engineering and Materials Science Division, Argonne National Laboratory, Lemont, Illinois 60439, USA

    2018-01-28

    Molecular simulation has emerged as an essential tool for modern-day research, but obtaining proper results and making reliable conclusions from simulations requires adequate sampling of the system under consideration. To this end, a variety of methods exist in the literature that can enhance sampling considerably, and increasingly sophisticated, effective algorithms continue to be developed at a rapid pace. Implementation of these techniques, however, can be challenging for experts and non-experts alike. There is a clear need for software that provides rapid, reliable, and easy access to a wide range of advanced sampling methods, and that facilitates implementation of new techniques as they emerge. Here we present SSAGES, a publicly available Software Suite for Advanced General Ensemble Simulations designed to interface with multiple widely used molecular dynamics simulations packages. SSAGES allows facile application of a variety of enhanced sampling techniques—including adaptive biasing force, string methods, and forward flux sampling—that extract meaningful free energy and transition path data from all-atom and coarse grained simulations. A noteworthy feature of SSAGES is a user-friendly framework that facilitates further development and implementation of new methods and collective variables. In this work, the use of SSAGES is illustrated in the context of simple representative applications involving distinct methods and different collective variables that are available in the current release of the suite.

  20. Dexterity: A MATLAB-based analysis software suite for processing and visualizing data from tasks that measure arm or forelimb function.

    Science.gov (United States)

    Butensky, Samuel D; Sloan, Andrew P; Meyers, Eric; Carmel, Jason B

    2017-07-15

    Hand function is critical for independence, and neurological injury often impairs dexterity. To measure hand function in people or forelimb function in animals, sensors are employed to quantify manipulation. These sensors make assessment easier and more quantitative and allow automation of these tasks. While automated tasks improve objectivity and throughput, they also produce large amounts of data that can be burdensome to analyze. We created software called Dexterity that simplifies data analysis of automated reaching tasks. Dexterity is MATLAB software that enables quick analysis of data from forelimb tasks. Through a graphical user interface, files are loaded and data are identified and analyzed. These data can be annotated or graphed directly. Analysis is saved, and the graph and corresponding data can be exported. For additional analysis, Dexterity provides access to custom scripts created by other users. To determine the utility of Dexterity, we performed a study to evaluate the effects of task difficulty on the degree of impairment after injury. Dexterity analyzed two months of data and allowed new users to annotate the experiment, visualize results, and save and export data easily. Previous analysis of tasks was performed with custom data analysis, requiring expertise with analysis software. Dexterity made the tools required to analyze, visualize and annotate data easy to use by investigators without data science experience. Dexterity increases accessibility to automated tasks that measure dexterity by making analysis of large data intuitive, robust, and efficient. Copyright © 2017 Elsevier B.V. All rights reserved.

  1. User Guide for the STAYSL PNNL Suite of Software Tools

    Energy Technology Data Exchange (ETDEWEB)

    Greenwood, Lawrence R.; Johnson, Christian D.

    2013-02-27

    The STAYSL PNNL software suite provides a set of tools for working with neutron activation rates measured in a nuclear fission reactor, an accelerator-based neutron source, or any neutron field to determine the neutron flux spectrum through a generalized least-squares approach. This process is referred to as neutron spectral adjustment since the preferred approach is to use measured data to adjust neutron spectra provided by neutron physics calculations. The input data consist of the reaction rates based on measured activities, an initial estimate of the neutron flux spectrum, neutron activation cross sections and their associated uncertainties (covariances), and relevant correction factors. The output consists of the adjusted neutron flux spectrum and associated covariance matrix, which is useful for neutron dosimetry and radiation damage calculations.

  2. SUIT

    DEFF Research Database (Denmark)

    Algreen-Ussing, Gregers; Wedebrunn, Ola

    2003-01-01

    Leaflet om project SUIT udgivet af European Commission. Tryksagen forklarer i korte ord resultatet af projektet SUIT. Kulturværdier i Miljøspørgsmål. Vurdering af projekter og indvirkning på miljø....

  3. Software FMEA analysis for safety-related application software

    International Nuclear Information System (INIS)

    Park, Gee-Yong; Kim, Dong Hoon; Lee, Dong Young

    2014-01-01

    Highlights: • We develop a modified FMEA analysis suited for applying to software architecture. • A template for failure modes on a specific software language is established. • A detailed-level software FMEA analysis on nuclear safety software is presented. - Abstract: A method of a software safety analysis is described in this paper for safety-related application software. The target software system is a software code installed at an Automatic Test and Interface Processor (ATIP) in a digital reactor protection system (DRPS). For the ATIP software safety analysis, at first, an overall safety or hazard analysis is performed over the software architecture and modules, and then a detailed safety analysis based on the software FMEA (Failure Modes and Effect Analysis) method is applied to the ATIP program. For an efficient analysis, the software FMEA analysis is carried out based on the so-called failure-mode template extracted from the function blocks used in the function block diagram (FBD) for the ATIP software. The software safety analysis by the software FMEA analysis, being applied to the ATIP software code, which has been integrated and passed through a very rigorous system test procedure, is proven to be able to provide very valuable results (i.e., software defects) that could not be identified during various system tests

  4. The IMBA suite: integrated modules for bioassay analysis

    Energy Technology Data Exchange (ETDEWEB)

    Birchall, A.; Jarvis, N.S.; Peace, M.S.; Riddell, A.E.; Battersby, W.P

    1998-07-01

    The increasing complexity of models representing the biokinetic behaviour of radionuclides in the body following intake poses problems for people who are required to implement these models. The problem is exacerbated by the current paucity of suitable software. In order to remedy this situation, a collaboration between British Nuclear Fuels, Westlakes Research Institute and the National Radiological Protection Board has started with the aim of producing a suite of modules for estimating intakes and doses from bioassay measurements using the new ICRP models. Each module will have a single purpose (e.g. to calculate respiratory tract deposition) and will interface with other software using data files. The elements to be implemented initially are plutonium, uranium, caesium, iodine and tritium. It is intended to make the software available to other parties under terms yet to be decided. This paper describes the proposed suite of integrated modules for bioassay analysis, IMBA. (author)

  5. Modular Algorithm Testbed Suite (MATS): A Software Framework for Automatic Target Recognition

    Science.gov (United States)

    2017-01-01

    NAVAL SURFACE WARFARE CENTER PANAMA CITY DIVISION PANAMA CITY, FL 32407-7001 TECHNICAL REPORT NSWC PCD TR-2017-004 MODULAR ...31-01-2017 Technical Modular Algorithm Testbed Suite (MATS): A Software Framework for Automatic Target Recognition DR...flexible platform to facilitate the development and testing of ATR algorithms. To that end, NSWC PCD has created the Modular Algorithm Testbed Suite

  6. HAZARD ANALYSIS SOFTWARE

    International Nuclear Information System (INIS)

    Sommer, S; Tinh Tran, T.

    2008-01-01

    Washington Safety Management Solutions, LLC developed web-based software to improve the efficiency and consistency of hazard identification and analysis, control selection and classification, and to standardize analysis reporting at Savannah River Site. In the new nuclear age, information technology provides methods to improve the efficiency of the documented safety analysis development process which includes hazard analysis activities. This software provides a web interface that interacts with a relational database to support analysis, record data, and to ensure reporting consistency. A team of subject matter experts participated in a series of meetings to review the associated processes and procedures for requirements and standard practices. Through these meetings, a set of software requirements were developed and compiled into a requirements traceability matrix from which software could be developed. The software was tested to ensure compliance with the requirements. Training was provided to the hazard analysis leads. Hazard analysis teams using the software have verified its operability. The software has been classified as NQA-1, Level D, as it supports the analysis team but does not perform the analysis. The software can be transported to other sites with alternate risk schemes. The software is being used to support the development of 14 hazard analyses. User responses have been positive with a number of suggestions for improvement which are being incorporated as time permits. The software has enforced a uniform implementation of the site procedures. The software has significantly improved the efficiency and standardization of the hazard analysis process

  7. TypingSuite: Integrated Software for Presenting Stimuli, and Collecting and Analyzing Typing Data

    Science.gov (United States)

    Mazerolle, Erin L.; Marchand, Yannick

    2015-01-01

    Research into typing patterns has broad applications in both psycholinguistics and biometrics (i.e., improving security of computer access via each user's unique typing patterns). We present a new software package, TypingSuite, which can be used for presenting visual and auditory stimuli, collecting typing data, and summarizing and analyzing the…

  8. Technical Note: DIRART- A software suite for deformable image registration and adaptive radiotherapy research

    International Nuclear Information System (INIS)

    Yang Deshan; Brame, Scott; El Naqa, Issam; Aditya, Apte; Wu Yu; Murty Goddu, S.; Mutic, Sasa; Deasy, Joseph O.; Low, Daniel A.

    2011-01-01

    Purpose: Recent years have witnessed tremendous progress in image guide radiotherapy technology and a growing interest in the possibilities for adapting treatment planning and delivery over the course of treatment. One obstacle faced by the research community has been the lack of a comprehensive open-source software toolkit dedicated for adaptive radiotherapy (ART). To address this need, the authors have developed a software suite called the Deformable Image Registration and Adaptive Radiotherapy Toolkit (DIRART). Methods: DIRART is an open-source toolkit developed in MATLAB. It is designed in an object-oriented style with focus on user-friendliness, features, and flexibility. It contains four classes of DIR algorithms, including the newer inverse consistency algorithms to provide consistent displacement vector field in both directions. It also contains common ART functions, an integrated graphical user interface, a variety of visualization and image-processing features, dose metric analysis functions, and interface routines. These interface routines make DIRART a powerful complement to the Computational Environment for Radiotherapy Research (CERR) and popular image-processing toolkits such as ITK. Results: DIRART provides a set of image processing/registration algorithms and postprocessing functions to facilitate the development and testing of DIR algorithms. It also offers a good amount of options for DIR results visualization, evaluation, and validation. Conclusions: By exchanging data with treatment planning systems via DICOM-RT files and CERR, and by bringing image registration algorithms closer to radiotherapy applications, DIRART is potentially a convenient and flexible platform that may facilitate ART and DIR research.

  9. Data Analysis and Graphing in an Introductory Physics Laboratory: Spreadsheet versus Statistics Suite

    Science.gov (United States)

    Peterlin, Primoz

    2010-01-01

    Two methods of data analysis are compared: spreadsheet software and a statistics software suite. Their use is compared analysing data collected in three selected experiments taken from an introductory physics laboratory, which include a linear dependence, a nonlinear dependence and a histogram. The merits of each method are compared. (Contains 7…

  10. Data analysis and graphing in an introductory physics laboratory: spreadsheet versus statistics suite

    International Nuclear Information System (INIS)

    Peterlin, Primoz

    2010-01-01

    Two methods of data analysis are compared: spreadsheet software and a statistics software suite. Their use is compared analysing data collected in three selected experiments taken from an introductory physics laboratory, which include a linear dependence, a nonlinear dependence and a histogram. The merits of each method are compared.

  11. Software safety hazard analysis

    International Nuclear Information System (INIS)

    Lawrence, J.D.

    1996-02-01

    Techniques for analyzing the safety and reliability of analog-based electronic protection systems that serve to mitigate hazards in process control systems have been developed over many years, and are reasonably well understood. An example is the protection system in a nuclear power plant. The extension of these techniques to systems which include digital computers is not well developed, and there is little consensus among software engineering experts and safety experts on how to analyze such systems. One possible technique is to extend hazard analysis to include digital computer-based systems. Software is frequently overlooked during system hazard analyses, but this is unacceptable when the software is in control of a potentially hazardous operation. In such cases, hazard analysis should be extended to fully cover the software. A method for performing software hazard analysis is proposed in this paper

  12. ANALYSIS OF DESIGN ELEMENTS IN SKI SUITS

    Directory of Open Access Journals (Sweden)

    Birsen Çileroğlu

    2014-06-01

    Full Text Available Popularity of Ski Sport in 19th century necessitated a new perspective on protective skiing clothing ag ainst the mountain climates and excessive cold. Winter clothing were the basis of ski attire during this period. By the beginning of 20th century lining cloth were used to minimize the wind effect. The difference between the men and women’s ski attire of the time consisted of a knee - length skirts worn over the golf trousers. Subsequent to the First World War, skiing suit models were influenced by the period uniforms and the producers reflected the fashion trends to the ski clothing. In conformance with th e prevailing trends, ski trousers were designed and produced for the women thus leading to reduction in gender differences. Increases in the ski tourism and holding of the first winter olympics in 1924 resulted in variations in ski attires, development of design characteristics, growth in user numbers, and enlargement of production capacities. Designers emphasized in their collections combined presence of elegance and practicality in the skiing attire. In 1930s, the ski suits influenced by pilots’ uniforms included characteristics permitting freedom of motion, and the design elements exhibited changes in terms of style, material and aerodynamics. In time, the ski attires showed varying design features distinguishing professionals from the amateurs. While protective functionality was primary consideration for the amateurs, for professionals the aerodynamic design was also a leading factor. Eventually, the increased differences in design characteristics were exhibited in ski suit collections, World reknown brands were formed, production and sales volumes showed significant rise. During 20th century the ski suits influenced by fashion trends to acquire unique styles reached a position of dominance to impact current fashion trends, and apart from sports attir es they became a style determinant in the clothing of cold climates. Ski suits

  13. ANALYSIS OF DESIGN ELEMENTS IN SKI SUITS

    OpenAIRE

    Çileroğlu, Birsen; Kelleci Özeren, Figen; Kıvılcımlar, İnci Seda

    2015-01-01

    Popularity of Ski Sport in 19th century necessitated a new perspective on protective skiing clothing against the mountain climates and excessive cold. Winter clothing were the basis of ski attire during this period.  By the beginning of 20th century lining cloth were used to minimize the wind effect. The difference between the men and women’s ski attire of the time consisted of a knee-length skirts worn over the golf trousers.  Subsequent to the First World War, skiing suit models were influe...

  14. EpiTools, A software suite for presurgical brain mapping in epilepsy: Intracerebral EEG.

    Science.gov (United States)

    Medina Villalon, S; Paz, R; Roehri, N; Lagarde, S; Pizzo, F; Colombet, B; Bartolomei, F; Carron, R; Bénar, C-G

    2018-03-29

    In pharmacoresistant epilepsy, exploration with depth electrodes can be needed to precisely define the epileptogenic zone. Accurate location of these electrodes is thus essential for the interpretation of Stereotaxic EEG (SEEG) signals. As SEEG analysis increasingly relies on signal processing, it is crucial to make a link between these results and patient's anatomy. Our aims were thus to develop a suite of software tools, called "EpiTools", able to i) precisely and automatically localize the position of each SEEG contact and ii) display the results of signal analysis in each patient's anatomy. The first tool, GARDEL (GUI for Automatic Registration and Depth Electrode Localization), is able to automatically localize SEEG contacts and to label each contact according to a pre-specified nomenclature (for instance that of FreeSurfer or MarsAtlas). The second tool, 3Dviewer, enables to visualize in the 3D anatomy of the patient the origin of signal processing results such as rate of biomarkers, connectivity graphs or Epileptogenicity Index. GARDEL was validated in 30 patients by clinicians and proved to be highly reliable to determine within the patient's individual anatomy the actual location of contacts. GARDEL is a fully automatic electrode localization tool needing limited user interaction (only for electrode naming or contact correction). The 3Dviewer is able to read signal processing results and to display them in link with patient's anatomy. EpiTools can help speeding up the interpretation of SEEG data and improving its precision. Copyright © 2018 Elsevier B.V. All rights reserved.

  15. MASH Suite: a user-friendly and versatile software interface for high-resolution mass spectrometry data interpretation and visualization.

    Science.gov (United States)

    Guner, Huseyin; Close, Patrick L; Cai, Wenxuan; Zhang, Han; Peng, Ying; Gregorich, Zachery R; Ge, Ying

    2014-03-01

    The rapid advancements in mass spectrometry (MS) instrumentation, particularly in Fourier transform (FT) MS, have made the acquisition of high-resolution and high-accuracy mass measurements routine. However, the software tools for the interpretation of high-resolution MS data are underdeveloped. Although several algorithms for the automatic processing of high-resolution MS data are available, there is still an urgent need for a user-friendly interface with functions that allow users to visualize and validate the computational output. Therefore, we have developed MASH Suite, a user-friendly and versatile software interface for processing high-resolution MS data. MASH Suite contains a wide range of features that allow users to easily navigate through data analysis, visualize complex high-resolution MS data, and manually validate automatically processed results. Furthermore, it provides easy, fast, and reliable interpretation of top-down, middle-down, and bottom-up MS data. MASH Suite is convenient, easily operated, and freely available. It can greatly facilitate the comprehensive interpretation and validation of high-resolution MS data with high accuracy and reliability.

  16. SAGES: a suite of freely-available software tools for electronic disease surveillance in resource-limited settings.

    Directory of Open Access Journals (Sweden)

    Sheri L Lewis

    Full Text Available Public health surveillance is undergoing a revolution driven by advances in the field of information technology. Many countries have experienced vast improvements in the collection, ingestion, analysis, visualization, and dissemination of public health data. Resource-limited countries have lagged behind due to challenges in information technology infrastructure, public health resources, and the costs of proprietary software. The Suite for Automated Global Electronic bioSurveillance (SAGES is a collection of modular, flexible, freely-available software tools for electronic disease surveillance in resource-limited settings. One or more SAGES tools may be used in concert with existing surveillance applications or the SAGES tools may be used en masse for an end-to-end biosurveillance capability. This flexibility allows for the development of an inexpensive, customized, and sustainable disease surveillance system. The ability to rapidly assess anomalous disease activity may lead to more efficient use of limited resources and better compliance with World Health Organization International Health Regulations.

  17. A comprehensive software suite for protein family construction and functional site prediction.

    Directory of Open Access Journals (Sweden)

    David Renfrew Haft

    Full Text Available In functionally diverse protein families, conservation in short signature regions may outperform full-length sequence comparisons for identifying proteins that belong to a subgroup within which one specific aspect of their function is conserved. The SIMBAL workflow (Sites Inferred by Metabolic Background Assertion Labeling is a data-mining procedure for finding such signature regions. It begins by using clues from genomic context, such as co-occurrence or conserved gene neighborhoods, to build a useful training set from a large number of uncharacterized but mutually homologous proteins. When training set construction is successful, the YES partition is enriched in proteins that share function with the user's query sequence, while the NO partition is depleted. A selected query sequence is then mined for short signature regions whose closest matches overwhelmingly favor proteins from the YES partition. High-scoring signature regions typically contain key residues critical to functional specificity, so proteins with the highest sequence similarity across these regions tend to share the same function. The SIMBAL algorithm was described previously, but significant manual effort, expertise, and a supporting software infrastructure were required to prepare the requisite training sets. Here, we describe a new, distributable software suite that speeds up and simplifies the process for using SIMBAL, most notably by providing tools that automate training set construction. These tools have broad utility for comparative genomics, allowing for flexible collection of proteins or protein domains based on genomic context as well as homology, a capability that can greatly assist in protein family construction. Armed with this new software suite, SIMBAL can serve as a fast and powerful in silico alternative to direct experimentation for characterizing proteins and their functional interactions.

  18. Automated Software Vulnerability Analysis

    Science.gov (United States)

    Sezer, Emre C.; Kil, Chongkyung; Ning, Peng

    Despite decades of research, software continues to have vulnerabilities. Successful exploitations of these vulnerabilities by attackers cost millions of dollars to businesses and individuals. Unfortunately, most effective defensive measures, such as patching and intrusion prevention systems, require an intimate knowledge of the vulnerabilities. Many systems for detecting attacks have been proposed. However, the analysis of the exploited vulnerabilities is left to security experts and programmers. Both the human effortinvolved and the slow analysis process are unfavorable for timely defensive measure to be deployed. The problem is exacerbated by zero-day attacks.

  19. Results and Analysis from Space Suit Joint Torque Testing

    Science.gov (United States)

    Matty, Jennifer

    2010-01-01

    This joint mobility KC lecture included information from two papers, "A Method for and Issues Associated with the Determination of Space Suit Joint Requirements" and "Results and Analysis from Space Suit Joint Torque Testing," as presented for the International Conference on Environmental Systems in 2009 and 2010, respectively. The first paper discusses historical joint torque testing methodologies and approaches that were tested in 2008 and 2009. The second paper discusses the testing that was completed in 2009 and 2010.

  20. A Software Suite for Testing SpaceWire Devices and Networks

    Science.gov (United States)

    Mills, Stuart; Parkes, Steve

    2015-09-01

    SpaceWire is a data-handling network for use on-board spacecraft, which connects together instruments, mass-memory, processors, downlink telemetry, and other on-board sub-systems. SpaceWire is simple to implement and has some specific characteristics that help it support data-handling applications in space: high-speed, low-power, simplicity, relatively low implementation cost, and architectural flexibility making it ideal for many space missions. SpaceWire provides high-speed (2 Mbits/s to 200 Mbits/s), bi-directional, full-duplex data-links, which connect together SpaceWire enabled equipment. Data-handling networks can be built to suit particular applications using point-to-point data-links and routing switches. STAR-Dundee’s STAR-System software stack has been designed to meet the needs of engineers designing and developing SpaceWire networks and devices. This paper describes the aims of the software and how those needs were met.

  1. PLEASE: The Python Low-energy Electron Analysis SuitE – Enabling Rapid Analysis of LEEM and LEED Data

    Directory of Open Access Journals (Sweden)

    Maxwell Grady

    2018-02-01

    Full Text Available PLEASE, the Python Low-energy Electron Analysis SuitE, provides an open source and cross-platform graphical user interface (GUI for rapid analysis and visualization of low energy electron microscopy (LEEM data sets. LEEM and the associated technique, selected area micro-spot low energy electron diffraction (μ-LEED, are powerful tools for analysis of the surface structure for many novel materials. Specifically, these tools are uniquely suited for the characterization of two-dimensional materials. PLEASE offers a user-friendly point-and-click method for extracting intensity-voltage curves from LEEM and LEED data sets. Analysis of these curves provides insight into the atomic structure of the target material surface with unparalleled resolution.

  2. Salvus: A scalable software suite for full-waveform modelling & inversion

    Science.gov (United States)

    Afanasiev, M.; Boehm, C.; van Driel, M.; Krischer, L.; Fichtner, A.

    2017-12-01

    Full-waveform inversion (FWI), whether at the lab, exploration, or planetary scale, requires the cooperation of five principal components. (1) The geometry of the domain needs to be properly discretized and an initial guess of the model parameters must be projected onto it; (2) Large volumes of recorded waveform data must be collected, organized, and processed; (3) Synthetic waveform data must be efficiently and accurately computed through complex domains; (4) Suitable misfit functions and optimization techniques must be used to relate discrepancies in data space to perturbations in the model; and (5) Some form of workflow management must be employed to schedule and run (1) - (4) in the correct order. Each one of these components can represent a formidable technical challenge which redirects energy from the true task at hand: using FWI to extract new information about some underlying continuum.In this presentation we give an overview of the current status of the Salvus software suite, which was introduced to address the challenges listed above. Specifically, we touch on (1) salvus_mesher, which eases the discretization of complex Earth models into hexahedral meshes; (2) salvus_seismo, which integrates with LASIF and ObsPy to streamline the processing and preparation of seismic data; (3) salvus_wave, a high-performance and scalable spectral-element solver capable of simulating waveforms through general unstructured 2- and 3-D domains, and (4) salvus_opt, an optimization toolbox specifically designed for full-waveform inverse problems. Tying everything together, we also discuss (5) salvus_flow: a workflow package designed to orchestrate and manage the rest of the suite. It is our hope that these developments represent a step towards the automation of large-scale seismic waveform inversion, while also lowering the barrier of entry for new applications. We include several examples of Salvus' use in (extra-) planetary seismology, non-destructive testing, and medical

  3. The PyRosetta Toolkit: a graphical user interface for the Rosetta software suite.

    Science.gov (United States)

    Adolf-Bryfogle, Jared; Dunbrack, Roland L

    2013-01-01

    The Rosetta Molecular Modeling suite is a command-line-only collection of applications that enable high-resolution modeling and design of proteins and other molecules. Although extremely useful, Rosetta can be difficult to learn for scientists with little computational or programming experience. To that end, we have created a Graphical User Interface (GUI) for Rosetta, called the PyRosetta Toolkit, for creating and running protocols in Rosetta for common molecular modeling and protein design tasks and for analyzing the results of Rosetta calculations. The program is highly extensible so that developers can add new protocols and analysis tools to the PyRosetta Toolkit GUI.

  4. The application of formal software engineering methods to the unattended and remote monitoring software suite at Los Alamos National Laboratory

    Energy Technology Data Exchange (ETDEWEB)

    Determan, John Clifford [Los Alamos National Laboratory; Longo, Joseph F [Los Alamos National Laboratory; Michel, Kelly D [Los Alamos National Laboratory

    2009-01-01

    The Unattended and Remote Monitoring (UNARM) system is a collection of specialized hardware and software used by the International Atomic Energy Agency (IAEA) to institute nuclear safeguards at many nuclear facilities around the world. The hardware consists of detectors, instruments, and networked computers for acquiring various forms of data, including but not limited to radiation data, global position coordinates, camera images, isotopic data, and operator declarations. The software provides two primary functions: the secure and reliable collection of this data from the instruments and the ability to perform an integrated review and analysis of the disparate data sources. Several years ago the team responsible for maintaining the software portion of the UNARM system began the process of formalizing its operations. These formal operations include a configuration management system, a change control board, an issue tracking system, and extensive formal testing, for both functionality and reliability. Functionality is tested with formal test cases chosen to fully represent the data types and methods of analysis that will be commonly encountered. Reliability is tested with iterative, concurrent testing where up to five analyses are executed simultaneously for thousands of cycles. Iterative concurrent testing helps ensure that there are no resource conflicts or leaks when multiple system components are in use simultaneously. The goal of this work is to provide a high quality, reliable product, commensurate with the criticality of the application. Testing results will be presented that demonstrate that this goal has been achieved and the impact of the introduction of a formal software engineering framework to the UNARM product will be presented.

  5. Personal computer security: part 1. Firewalls, antivirus software, and Internet security suites.

    Science.gov (United States)

    Caruso, Ronald D

    2003-01-01

    Personal computer (PC) security in the era of the Health Insurance Portability and Accountability Act of 1996 (HIPAA) involves two interrelated elements: safeguarding the basic computer system itself and protecting the information it contains and transmits, including personal files. HIPAA regulations have toughened the requirements for securing patient information, requiring every radiologist with such data to take further precautions. Security starts with physically securing the computer. Account passwords and a password-protected screen saver should also be set up. A modern antivirus program can easily be installed and configured. File scanning and updating of virus definitions are simple processes that can largely be automated and should be performed at least weekly. A software firewall is also essential for protection from outside intrusion, and an inexpensive hardware firewall can provide yet another layer of protection. An Internet security suite yields additional safety. Regular updating of the security features of installed programs is important. Obtaining a moderate degree of PC safety and security is somewhat inconvenient but is necessary and well worth the effort. Copyright RSNA, 2003

  6. Software quality testing process analysis

    OpenAIRE

    Mera Paz, Julián

    2016-01-01

    Introduction: This article is the result of reading, review, analysis of books, magazines and articles well known for their scientific and research quality, which have addressed the software quality testing process. The author, based on his work experience in software development companies, teaching and other areas, has compiled and selected information to argue and substantiate the importance of the software quality testing process. Methodology: the existing literature on the software qualit...

  7. CCP4 Software Suite: history, evolution, content, challenges and future developments

    Directory of Open Access Journals (Sweden)

    Krissinel, Eugene

    2015-04-01

    Full Text Available Collaborative Computational Project Number 4 (CCP4 in Protein Crystallography is a public resource for producing and supporting a world-leading, integrated Suite of programs that allows researchers to determine macromolecular structures by X-ray crystallography, and other biophysical techniques. CCP4 supports the widest possible researcher community, embracing academic, not for profit, and for profit research. The primary aims of CCP4 include development and support of the development of cutting edge approaches to experimental determination and analysis of protein structure, with integration of them into the suite for worldwide dissemination. In addition, CCP4 plays an important role in the education and training of scientists in experimental structural biology. In this paper, we overview CCP4’s 35-year long history and (technical milestones of its evolution. We will also consider how a particular structure of CCP4 Suite and Collaboration has emerged, its main functionality, current state and plans for future.“Collaborative Computational Project Number 4 (CCP4” en Cristalografía de Proteínas es un recurso público líder mundial, encaminado a producir y mantener un conjunto integrado de programas que permite a los investigadores determinar estructuras macromoleculares mediante cristalografía de rayos-X, así como por otras técnicas biofísicas. CCP4 va dirigido a la más amplia comunidad científica posible, abarcando investigaciones en el ámbito académico, tanto sin ánimo de lucro como con él. Sus objetivos principales incluyen el desarrollo y soporte de metodologías punteras para la determinación y análisis de estructuras de proteínas, integradas en un conjunto bien definido para facilitar su fácil difusión mundial. Además, CCP4 juega un papel importante en la formación y entrenamiento de científicos en biología estructural experimental. En este artículo, ofreceré una visión de conjunto de la larga historia e hitos t

  8. Space suit bioenergetics: framework and analysis of unsuited and suited activity.

    Science.gov (United States)

    Carr, Christopher E; Newman, Dava J

    2007-11-01

    Metabolic costs limit the duration and intensity of extravehicular activity (EVA), an essential component of future human missions to the Moon and Mars. Energetics Framework: We present a framework for comparison of energetics data across and between studies. This framework, applied to locomotion, differentiates between muscle efficiency and energy recovery, two concepts often confused in the literature. The human run-walk transition in Earth gravity occurs at the point for which energy recovery is approximately the same for walking and running, suggesting a possible role for recovery in gait transitions. Muscular Energetics: Muscle physiology limits the overall efficiency by which chemical energy is converted through metabolism to useful work. Unsuited Locomotion: Walking and running use different methods of energy storage and release. These differences contribute to the relative changes in the metabolic cost of walking and running as gravity is varied, with the metabolic cost of locomoting at a given velocity changing in proportion to gravity for running and less than in proportion for walking. Space Suits: Major factors affecting the energetic cost of suited movement include suit pressurization, gravity, velocity, surface slope, and space suit configuration. Apollo lunar surface EVA traverse metabolic rates, while unexpectedly low, were higher than other activity categories. The Lunar Roving Vehicle facilitated even lower metabolic rates, thus longer duration EVAs. Muscles and tendons act like springs during running; similarly, longitudinal pressure forces in gas pressure space suits allow spring-like storage and release of energy when suits are self-supporting.

  9. The Sample Analysis at Mars Investigation and Instrument Suite

    Science.gov (United States)

    Mahaffy, Paul; Webster, Christopher R.; Conrad, Pamela G.; Arvey, Robert; Bleacher, Lora; Brinckerhoff, William B.; Eigenbrode, Jennifer L.; Chalmers, Robert A.; Dworkin, Jason P.; Errigo, Therese; hide

    2012-01-01

    The Sample Analysis at Mars (SAM) investigation of the Mars Science Laboratory (MSL) addresses the chemical and isotopic composition of the atmosphere and volatiles extracted from solid samples. The SAM investigation is designed to contribute substantially to the mission goal of quantitatively assessing the habitability of Mars as an essential step in the search for past or present life on Mars. SAM is a 40 kg instrument suite located in the interior of MSL's Curiosity rover. The SAM instruments are a quadrupole mass spectrometer, a tunable laser spectrometer, and a 6-column gas chromatograph all coupled through solid and gas processing systems to provide complementary information on the same samples. The SAM suite is able to measure a suite of light isotopes and to analyze volatiles directly from the atmosphere or thermally released from solid samples. In addition to measurements of simple inorganic compounds and noble gases SAM will conduct a sensitive search for organic compounds with either thermal or chemical extraction from sieved samples delivered by the sample processing system on the Curiosity rover's robotic arm,

  10. On-Orbit Software Analysis

    Science.gov (United States)

    Moran, Susanne I.

    2004-01-01

    The On-Orbit Software Analysis Research Infusion Project was done by Intrinsyx Technologies Corporation (Intrinsyx) at the National Aeronautics and Space Administration (NASA) Ames Research Center (ARC). The Project was a joint collaborative effort between NASA Codes IC and SL, Kestrel Technology (Kestrel), and Intrinsyx. The primary objectives of the Project were: Discovery and verification of software program properties and dependencies, Detection and isolation of software defects across different versions of software, and Compilation of historical data and technical expertise for future applications

  11. An Integrated Software Suite for Surface-based Analyses of Cerebral Cortex

    Science.gov (United States)

    Van Essen, David C.; Drury, Heather A.; Dickson, James; Harwell, John; Hanlon, Donna; Anderson, Charles H.

    2001-01-01

    The authors describe and illustrate an integrated trio of software programs for carrying out surface-based analyses of cerebral cortex. The first component of this trio, SureFit (Surface Reconstruction by Filtering and Intensity Transformations), is used primarily for cortical segmentation, volume visualization, surface generation, and the mapping of functional neuroimaging data onto surfaces. The second component, Caret (Computerized Anatomical Reconstruction and Editing Tool Kit), provides a wide range of surface visualization and analysis options as well as capabilities for surface flattening, surface-based deformation, and other surface manipulations. The third component, SuMS (Surface Management System), is a database and associated user interface for surface-related data. It provides for efficient insertion, searching, and extraction of surface and volume data from the database. PMID:11522765

  12. An integrated software suite for surface-based analyses of cerebral cortex

    Science.gov (United States)

    Van Essen, D. C.; Drury, H. A.; Dickson, J.; Harwell, J.; Hanlon, D.; Anderson, C. H.

    2001-01-01

    The authors describe and illustrate an integrated trio of software programs for carrying out surface-based analyses of cerebral cortex. The first component of this trio, SureFit (Surface Reconstruction by Filtering and Intensity Transformations), is used primarily for cortical segmentation, volume visualization, surface generation, and the mapping of functional neuroimaging data onto surfaces. The second component, Caret (Computerized Anatomical Reconstruction and Editing Tool Kit), provides a wide range of surface visualization and analysis options as well as capabilities for surface flattening, surface-based deformation, and other surface manipulations. The third component, SuMS (Surface Management System), is a database and associated user interface for surface-related data. It provides for efficient insertion, searching, and extraction of surface and volume data from the database.

  13. Data processing software suite SITENNO for coherent X-ray diffraction imaging using the X-ray free-electron laser SACLA

    International Nuclear Information System (INIS)

    Sekiguchi, Yuki; Oroguchi, Tomotaka; Takayama, Yuki; Nakasako, Masayoshi

    2014-01-01

    The software suite SITENNO is developed for processing diffraction data collected in coherent X-ray diffraction imaging experiments of non-crystalline particles using an X-ray free-electron laser. Coherent X-ray diffraction imaging is a promising technique for visualizing the structures of non-crystalline particles with dimensions of micrometers to sub-micrometers. Recently, X-ray free-electron laser sources have enabled efficient experiments in the ‘diffraction before destruction’ scheme. Diffraction experiments have been conducted at SPring-8 Angstrom Compact free-electron LAser (SACLA) using the custom-made diffraction apparatus KOTOBUKI-1 and two multiport CCD detectors. In the experiments, ten thousands of single-shot diffraction patterns can be collected within several hours. Then, diffraction patterns with significant levels of intensity suitable for structural analysis must be found, direct-beam positions in diffraction patterns determined, diffraction patterns from the two CCD detectors merged, and phase-retrieval calculations for structural analyses performed. A software suite named SITENNO has been developed to semi-automatically apply the four-step processing to a huge number of diffraction data. Here, details of the algorithm used in the suite are described and the performance for approximately 9000 diffraction patterns collected from cuboid-shaped copper oxide particles reported. Using the SITENNO suite, it is possible to conduct experiments with data processing immediately after the data collection, and to characterize the size distribution and internal structures of the non-crystalline particles

  14. Software architecture analysis tool : software architecture metrics collection

    NARCIS (Netherlands)

    Muskens, J.; Chaudron, M.R.V.; Westgeest, R.

    2002-01-01

    The Software Engineering discipline lacks the ability to evaluate software architectures. Here we describe a tool for software architecture analysis that is based on metrics. Metrics can be used to detect possible problems and bottlenecks in software architectures. Even though metrics do not give a

  15. Model-driven design of simulation support for the TERRA robot software tool suite

    NARCIS (Netherlands)

    Lu, Zhou; Bezemer, M.M.; Broenink, Johannes F.

    2015-01-01

    Model-Driven Development (MDD) – based on the concepts of model, meta-model and model transformation – is an approach to develop predictable and re- liable software for Cyber-Physical Systems (CPS). The work presented here concerns a methodology to design simulation software based on MDD techniques,

  16. Software development for teleroentgenogram analysis

    Science.gov (United States)

    Goshkoderov, A. A.; Khlebnikov, N. A.; Obabkov, I. N.; Serkov, K. V.; Gajniyarov, I. M.; Aliev, A. A.

    2017-09-01

    A framework for the analysis and calculation of teleroentgenograms was developed. Software development was carried out in the Department of Children's Dentistry and Orthodontics in Ural State Medical University. The software calculates the teleroentgenogram by the original method which was developed in this medical department. Program allows designing its own methods for calculating the teleroentgenograms by new methods. It is planned to use the technology of machine learning (Neural networks) in the software. This will help to make the process of calculating the teleroentgenograms easier because methodological points will be placed automatically.

  17. DelPhi: a comprehensive suite for DelPhi software and associated resources

    Directory of Open Access Journals (Sweden)

    Li Lin

    2012-05-01

    Full Text Available Abstract Background Accurate modeling of electrostatic potential and corresponding energies becomes increasingly important for understanding properties of biological macromolecules and their complexes. However, this is not an easy task due to the irregular shape of biological entities and the presence of water and mobile ions. Results Here we report a comprehensive suite for the well-known Poisson-Boltzmann solver, DelPhi, enriched with additional features to facilitate DelPhi usage. The suite allows for easy download of both DelPhi executable files and source code along with a makefile for local installations. The users can obtain the DelPhi manual and parameter files required for the corresponding investigation. Non-experienced researchers can download examples containing all necessary data to carry out DelPhi runs on a set of selected examples illustrating various DelPhi features and demonstrating DelPhi’s accuracy against analytical solutions. Conclusions DelPhi suite offers not only the DelPhi executable and sources files, examples and parameter files, but also provides links to third party developed resources either utilizing DelPhi or providing plugins for DelPhi. In addition, the users and developers are offered a forum to share ideas, resolve issues, report bugs and seek help with respect to the DelPhi package. The resource is available free of charge for academic users from URL: http://compbio.clemson.edu/DelPhi.php.

  18. SECIMTools: a suite of metabolomics data analysis tools.

    Science.gov (United States)

    Kirpich, Alexander S; Ibarra, Miguel; Moskalenko, Oleksandr; Fear, Justin M; Gerken, Joseph; Mi, Xinlei; Ashrafi, Ali; Morse, Alison M; McIntyre, Lauren M

    2018-04-20

    Metabolomics has the promise to transform the area of personalized medicine with the rapid development of high throughput technology for untargeted analysis of metabolites. Open access, easy to use, analytic tools that are broadly accessible to the biological community need to be developed. While technology used in metabolomics varies, most metabolomics studies have a set of features identified. Galaxy is an open access platform that enables scientists at all levels to interact with big data. Galaxy promotes reproducibility by saving histories and enabling the sharing workflows among scientists. SECIMTools (SouthEast Center for Integrated Metabolomics) is a set of Python applications that are available both as standalone tools and wrapped for use in Galaxy. The suite includes a comprehensive set of quality control metrics (retention time window evaluation and various peak evaluation tools), visualization techniques (hierarchical cluster heatmap, principal component analysis, modular modularity clustering), basic statistical analysis methods (partial least squares - discriminant analysis, analysis of variance, t-test, Kruskal-Wallis non-parametric test), advanced classification methods (random forest, support vector machines), and advanced variable selection tools (least absolute shrinkage and selection operator LASSO and Elastic Net). SECIMTools leverages the Galaxy platform and enables integrated workflows for metabolomics data analysis made from building blocks designed for easy use and interpretability. Standard data formats and a set of utilities allow arbitrary linkages between tools to encourage novel workflow designs. The Galaxy framework enables future data integration for metabolomics studies with other omics data.

  19. Real-time fluoroscopic needle guidance in the interventional radiology suite using navigational software for percutaneous bone biopsies in children

    Energy Technology Data Exchange (ETDEWEB)

    Shellikeri, Sphoorti; Srinivasan, Abhay; Krishnamurthy, Ganesh; Vatsky, Seth; Zhu, Xiaowei; Keller, Marc S.; Cahill, Anne Marie [The Children' s Hospital of Philadelphia, Department of Radiology, Philadelphia, PA (United States); Setser, Randolph M. [Siemens Medical Solutions USA, Inc., Hoffman Estates, IL (United States); Hwang, Tiffany J. [University of Southern California, Keck School of Medicine, Los Angeles, CA (United States); Girard, Erin [Siemens Medical Solutions USA, Inc., Princeton, NJ (United States)

    2017-07-15

    Navigational software provides real-time fluoroscopic needle guidance for percutaneous procedures in the Interventional Radiology (IR) suite. We describe our experience with navigational software for pediatric percutaneous bone biopsies in the IR suite and compare technical success, diagnostic accuracy, radiation dose and procedure time with that of CT-guided biopsies. Pediatric bone biopsies performed using navigational software (Syngo iGuide, Siemens Healthcare) from 2011 to 2016 were prospectively included and anatomically matched CT-guided bone biopsies from 2008 to 2016 were retrospectively reviewed with institutional review board approval. C-arm CT protocols used for navigational software-assisted cases included institution-developed low-dose (0.1/0.17 μGy/projection), regular-dose (0.36 μGy/projection), or a combination of low-dose/regular-dose protocols. Estimated effective radiation dose and procedure times were compared between software-assisted and CT-guided biopsies. Twenty-six patients (15 male; mean age: 10 years) underwent software-assisted biopsies (15 pelvic, 7 lumbar and 4 lower extremity) and 33 patients (13 male; mean age: 9 years) underwent CT-guided biopsies (22 pelvic, 7 lumbar and 4 lower extremity). Both modality biopsies resulted in a 100% technical success rate. Twenty-five of 26 (96%) software-assisted and 29/33 (88%) CT-guided biopsies were diagnostic. Overall, the effective radiation dose was significantly lower in software-assisted than CT-guided cases (3.0±3.4 vs. 6.6±7.7 mSv, P=0.02). The effective dose difference was most dramatic in software-assisted cases using low-dose C-arm CT (1.2±1.8 vs. 6.6±7.7 mSv, P=0.001) or combined low-dose/regular-dose C-arm CT (1.9±2.4 vs. 6.6±7.7 mSv, P=0.04), whereas effective dose was comparable in software-assisted cases using regular-dose C-arm CT (6.0±3.5 vs. 6.6±7.7 mSv, P=0.7). Mean procedure time was significantly lower for software-assisted cases (91±54 vs. 141±68 min, P=0

  20. Software Design for Smile Analysis

    Directory of Open Access Journals (Sweden)

    A. Sarkhosh

    2010-12-01

    Full Text Available Introduction: Esthetics and attractiveness of the smile is one of the major demands in contemporary orthodontic treatment. In order to improve a smile design, it is necessary to record “posed smile” as an intentional, non-pressure, static, natural and reproduciblesmile. The record then should be analyzed to determine its characteristics. In this study,we intended to design and introduce a software to analyze the smile rapidly and precisely in order to produce an attractive smile for the patients.Materials and Methods: For this purpose, a practical study was performed to design multimedia software “Smile Analysis” which can receive patients’ photographs and videographs. After giving records to the software, the operator should mark the points and lines which are displayed on the system’s guide and also define the correct scale for each image. Thirty-three variables are measured by the software and displayed on the report page. Reliability of measurements in both image and video was significantly high(=0.7-1.Results: In order to evaluate intra- operator and inter-operator reliability, five cases were selected randomly. Statistical analysis showed that calculations performed in smile analysis software were both valid and highly reliable (for both video and photo.Conclusion: The results obtained from smile analysis could be used in diagnosis,treatment planning and evaluation of the treatment progress.

  1. Inertial motion capture system for biomechanical analysis in pressure suits

    Science.gov (United States)

    Di Capua, Massimiliano

    A non-invasive system has been developed at the University of Maryland Space System Laboratory with the goal of providing a new capability for quantifying the motion of the human inside a space suit. Based on an array of six microprocessors and eighteen microelectromechanical (MEMS) inertial measurement units (IMUs), the Body Pose Measurement System (BPMS) allows the monitoring of the kinematics of the suit occupant in an unobtrusive, self-contained, lightweight and compact fashion, without requiring any external equipment such as those necessary with modern optical motion capture systems. BPMS measures and stores the accelerations, angular rates and magnetic fields acting upon each IMU, which are mounted on the head, torso, and each segment of each limb. In order to convert the raw data into a more useful form, such as a set of body segment angles quantifying pose and motion, a series of geometrical models and a non-linear complimentary filter were implemented. The first portion of this works focuses on assessing system performance, which was measured by comparing the BPMS filtered data against rigid body angles measured through an external VICON optical motion capture system. This type of system is the industry standard, and is used here for independent measurement of body pose angles. By comparing the two sets of data, performance metrics such as BPMS system operational conditions, accuracy, and drift were evaluated and correlated against VICON data. After the system and models were verified and their capabilities and limitations assessed, a series of pressure suit evaluations were conducted. Three different pressure suits were used to identify the relationship between usable range of motion and internal suit pressure. In addition to addressing range of motion, a series of exploration tasks were also performed, recorded, and analysed in order to identify different motion patterns and trajectories as suit pressure is increased and overall suit mobility is reduced

  2. Application of Software Safety Analysis Methods

    International Nuclear Information System (INIS)

    Park, G. Y.; Hur, S.; Cheon, S. W.; Kim, D. H.; Lee, D. Y.; Kwon, K. C.; Lee, S. J.; Koo, Y. H.

    2009-01-01

    A fully digitalized reactor protection system, which is called the IDiPS-RPS, was developed through the KNICS project. The IDiPS-RPS has four redundant and separated channels. Each channel is mainly composed of a group of bistable processors which redundantly compare process variables with their corresponding setpoints and a group of coincidence processors that generate a final trip signal when a trip condition is satisfied. Each channel also contains a test processor called the ATIP and a display and command processor called the COM. All the functions were implemented in software. During the development of the safety software, various software safety analysis methods were applied, in parallel to the verification and validation (V and V) activities, along the software development life cycle. The software safety analysis methods employed were the software hazard and operability (Software HAZOP) study, the software fault tree analysis (Software FTA), and the software failure modes and effects analysis (Software FMEA)

  3. EarthCollab, building geoscience-centric implementations of the VIVO semantic software suite

    Science.gov (United States)

    Rowan, L. R.; Gross, M. B.; Mayernik, M. S.; Daniels, M. D.; Krafft, D. B.; Kahn, H. J.; Allison, J.; Snyder, C. B.; Johns, E. M.; Stott, D.

    2017-12-01

    EarthCollab, an EarthCube Building Block project, is extending an existing open-source semantic web application, VIVO, to enable the exchange of information about scientific researchers and resources across institutions. EarthCollab is a collaboration between UNAVCO, a geodetic facility and consortium that supports diverse research projects informed by geodesy, The Bering Sea Project, an interdisciplinary field program whose data archive is hosted by NCAR's Earth Observing Laboratory, and Cornell University. VIVO has been implemented by more than 100 universities and research institutions to highlight research and institutional achievements. This presentation will discuss benefits and drawbacks of working with and extending open source software. Some extensions include plotting georeferenced objects on a map, a mobile-friendly theme, integration of faceting via Elasticsearch, extending the VIVO ontology to capture geoscience-centric objects and relationships, and the ability to cross-link between VIVO instances. Most implementations of VIVO gather information about a single organization. The EarthCollab project created VIVO extensions to enable cross-linking of VIVO instances to reduce the amount of duplicate information about the same people and scientific resources and to enable dynamic linking of related information across VIVO installations. As the list of customizations grows, so does the effort required to maintain compatibility between the EarthCollab forks and the main VIVO code. For example, dozens of libraries and dependencies were updated prior to the VIVO v1.10 release, which introduced conflicts in the EarthCollab cross-linking code. The cross-linking code has been developed to enable sharing of data across different versions of VIVO, however, using a JSON output schema standardized across versions. We will outline lessons learned in working with VIVO and its open source dependencies, which include Jena, Solr, Freemarker, and jQuery and discuss future

  4. MAUS: MICE Analysis User Software

    CERN Multimedia

    CERN. Geneva

    2012-01-01

    The Muon Ionization Cooling Experiment (MICE) has developed the MICE Analysis User Software (MAUS) to simulate and analyse experimental data. It serves as the primary codebase for the experiment, providing for online data quality checks and offline batch simulation and reconstruction. The code is structured in a Map-Reduce framework to allow parallelization whether on a personal machine or in the control room. Various software engineering practices from industry are also used to ensure correct and maintainable physics code, which include unit, functional and integration tests, continuous integration and load testing, code reviews, and distributed version control systems. Lastly, there are various small design decisions like using JSON as the data structure, using SWIG to allow developers to write components in either Python or C++, or using the SCons python-based build system that may be of interest to other experiments.

  5. Software Performs Complex Design Analysis

    Science.gov (United States)

    2008-01-01

    Designers use computational fluid dynamics (CFD) to gain greater understanding of the fluid flow phenomena involved in components being designed. They also use finite element analysis (FEA) as a tool to help gain greater understanding of the structural response of components to loads, stresses and strains, and the prediction of failure modes. Automated CFD and FEA engineering design has centered on shape optimization, which has been hindered by two major problems: 1) inadequate shape parameterization algorithms, and 2) inadequate algorithms for CFD and FEA grid modification. Working with software engineers at Stennis Space Center, a NASA commercial partner, Optimal Solutions Software LLC, was able to utilize its revolutionary, one-of-a-kind arbitrary shape deformation (ASD) capability-a major advancement in solving these two aforementioned problems-to optimize the shapes of complex pipe components that transport highly sensitive fluids. The ASD technology solves the problem of inadequate shape parameterization algorithms by allowing the CFD designers to freely create their own shape parameters, therefore eliminating the restriction of only being able to use the computer-aided design (CAD) parameters. The problem of inadequate algorithms for CFD grid modification is solved by the fact that the new software performs a smooth volumetric deformation. This eliminates the extremely costly process of having to remesh the grid for every shape change desired. The program can perform a design change in a markedly reduced amount of time, a process that would traditionally involve the designer returning to the CAD model to reshape and then remesh the shapes, something that has been known to take hours, days-even weeks or months-depending upon the size of the model.

  6. A suite of models to support the quantitative assessment of spread in pest risk analysis

    NARCIS (Netherlands)

    Robinet, C.; Kehlenbeck, H.; Werf, van der W.

    2012-01-01

    In the frame of the EU project PRATIQUE (KBBE-2007-212459 Enhancements of pest risk analysis techniques) a suite of models was developed to support the quantitative assessment of spread in pest risk analysis. This dataset contains the model codes (R language) for the four models in the suite. Three

  7. Intercomparison of gamma ray analysis software packages

    International Nuclear Information System (INIS)

    1998-04-01

    The IAEA undertook an intercomparison exercise to review available software for gamma ray spectra analysis. This document describes the methods used in the intercomparison exercise, characterizes the software packages reviewed and presents the results obtained. Only direct results are given without any recommendation for a particular software or method for gamma ray spectra analysis

  8. Infusing Reliability Techniques into Software Safety Analysis

    Science.gov (United States)

    Shi, Ying

    2015-01-01

    Software safety analysis for a large software intensive system is always a challenge. Software safety practitioners need to ensure that software related hazards are completely identified, controlled, and tracked. This paper discusses in detail how to incorporate the traditional reliability techniques into the entire software safety analysis process. In addition, this paper addresses how information can be effectively shared between the various practitioners involved in the software safety analyses. The author has successfully applied the approach to several aerospace applications. Examples are provided to illustrate the key steps of the proposed approach.

  9. Fault tree analysis of KNICS RPS software

    International Nuclear Information System (INIS)

    Park, Gee Yong; Kwon, Kee Choon; Koh, Kwang Yong; Jee, Eun Kyoung; Seong, Poong Hyun; Lee, Dae Hyung

    2008-01-01

    This paper describes the application of a software Fault Tree Analysis (FTA) as one of the analysis techniques for a Software Safety Analysis (SSA) at the design phase and its analysis results for the safety-critical software of a digital reactor protection system, which is called the KNICS RPS, being developed in the KNICS (Korea Nuclear Instrumentation and Control Systems) project. The software modules in the design description were represented by Function Blocks (FBs), and the software FTA was performed based on the well-defined fault tree templates for the FBs. The SSA, which is part of the verification and validation (V and V) activities, was activated at each phase of the software lifecycle for the KNICS RPS. At the design phase, the software HAZOP (Hazard and Operability) and the software FTA were employed in the SSA in such a way that the software HAZOP was performed first and then the software FTA was applied. The software FTA was applied to some critical modules selected from the software HAZOP analysis

  10. A Coupled Calculation Suite for Atucha II Operational Transients Analysis

    International Nuclear Information System (INIS)

    Mazzantini, O.; Schivo, M.; Cesare, J.D.; Garbero, R.; Rivero, M.; Theler, G.

    2011-01-01

    While more than a decade ago reactor and thermal hydraulic calculations were tedious and often needed a lot of approximations and simplifications that forced the designers to take a very conservative approach, computational resources available nowadays allow engineers to cope with increasingly complex problems in a reasonable time. The use of best-estimate calculations provides tools to justify convenient engineering margins, reduces costs, and maximises economic benefits. In this direction, a suite of coupled best-estimate specific calculation codes was developed to analyse the behaviour of the Atucha II nuclear power plant in Argentina. The developed tool includes three-dimensional spatial neutron kinetics, a channel-level model of the core thermal hydraulics with subcooled boiling correlations, a one-dimensional model of the primary and secondary circuits including pumps, steam generators, heat exchangers, and the turbine with all their associated control loops, and a complete simulation of the reactor control, limitation, and protection system working in closed-loop conditions as a faithful representation of the real power plant. In the present paper, a description of the coupling scheme between the codes involved is given, and some examples of their application to Atucha II are shown

  11. Dependability Analysis Methods For Configurable Software

    International Nuclear Information System (INIS)

    Dahll, Gustav; Pulkkinen, Urho

    1996-01-01

    Configurable software systems are systems which are built up by standard software components in the same way as a hardware system is built up by standard hardware components. Such systems are often used in the control of NPPs, also in safety related applications. A reliability analysis of such systems is therefore necessary. This report discusses what configurable software is, and what is particular with respect to reliability assessment of such software. Two very commonly used techniques in traditional reliability analysis, viz. failure mode, effect and criticality analysis (FMECA) and fault tree analysis are investigated. A real example is used to illustrate the discussed methods. Various aspects relevant to the assessment of the software reliability in such systems are discussed. Finally some models for quantitative software reliability assessment applicable on configurable software systems are described. (author)

  12. Reliability analysis of software based safety functions

    International Nuclear Information System (INIS)

    Pulkkinen, U.

    1993-05-01

    The methods applicable in the reliability analysis of software based safety functions are described in the report. Although the safety functions also include other components, the main emphasis in the report is on the reliability analysis of software. The check list type qualitative reliability analysis methods, such as failure mode and effects analysis (FMEA), are described, as well as the software fault tree analysis. The safety analysis based on the Petri nets is discussed. The most essential concepts and models of quantitative software reliability analysis are described. The most common software metrics and their combined use with software reliability models are discussed. The application of software reliability models in PSA is evaluated; it is observed that the recent software reliability models do not produce the estimates needed in PSA directly. As a result from the study some recommendations and conclusions are drawn. The need of formal methods in the analysis and development of software based systems, the applicability of qualitative reliability engineering methods in connection to PSA and the need to make more precise the requirements for software based systems and their analyses in the regulatory guides should be mentioned. (orig.). (46 refs., 13 figs., 1 tab.)

  13. Software architecture analysis of usability

    NARCIS (Netherlands)

    Folmer, Eelke

    2005-01-01

    One of the qualities that has received increased attention in recent decades is usability. A software product with poor usability is likely to fail in a highly competitive market; therefore software developing organizations are paying more and more attention to ensuring the usability of their

  14. CASAS: Cancer Survival Analysis Suite, a web based application.

    Science.gov (United States)

    Rupji, Manali; Zhang, Xinyan; Kowalski, Jeanne

    2017-01-01

    We present CASAS, a shiny R based tool for interactive survival analysis and visualization of results. The tool provides a web-based one stop shop to perform the following types of survival analysis:  quantile, landmark and competing risks, in addition to standard survival analysis.  The interface makes it easy to perform such survival analyses and obtain results using the interactive Kaplan-Meier and cumulative incidence plots.  Univariate analysis can be performed on one or several user specified variable(s) simultaneously, the results of which are displayed in a single table that includes log rank p-values and hazard ratios along with their significance. For several quantile survival analyses from multiple cancer types, a single summary grid is constructed. The CASAS package has been implemented in R and is available via http://shinygispa.winship.emory.edu/CASAS/. The developmental repository is available at https://github.com/manalirupji/CASAS/.

  15. Analysis of open source GIS software

    OpenAIRE

    Božnis, Andrius

    2006-01-01

    GIS is one of the most perspective information technology sciences sphere. GIS conjuncts the digital image analysis and data base systems. This makes GIS wide applicable and very high skills demanding system. There is a lot of commercial GIS software which is well advertised and which functionality is pretty well known, while open source software is forgotten. In this diploma work is made analysis of available open source GIS software on the Internet, in the scope of different projects interr...

  16. Gamma-Ray Spectrum Analysis Software GDA

    International Nuclear Information System (INIS)

    Wanabongse, P.

    1998-01-01

    The developmental work on computer software for gamma-ray spectrum analysis has been completed as a software package version 1.02 named GDA, which is an acronym for Gamma-spectrum Deconvolution and Analysis. The software package consists of three 3.5-inch diskettes for setup and a user's manual. GDA software can be installed for using on a personal computer with Windows 95 or Windows NT 4.0 operating system. A computer maybe the type of 80486 CPU with 8 megabytes of memory

  17. Joint optimization of algorithmic suites for EEG analysis.

    Science.gov (United States)

    Santana, Eder; Brockmeier, Austin J; Principe, Jose C

    2014-01-01

    Electroencephalogram (EEG) data analysis algorithms consist of multiple processing steps each with a number of free parameters. A joint optimization methodology can be used as a wrapper to fine-tune these parameters for the patient or application. This approach is inspired by deep learning neural network models, but differs because the processing layers for EEG are heterogeneous with different approaches used for processing space and time. Nonetheless, we treat the processing stages as a neural network and apply backpropagation to jointly optimize the parameters. This approach outperforms previous results on the BCI Competition II - dataset IV; additionally, it outperforms the common spatial patterns (CSP) algorithm on the BCI Competition III dataset IV. In addition, the optimized parameters in the architecture are still interpretable.

  18. Software architecture analysis of usability

    NARCIS (Netherlands)

    Folmer, E; van Gurp, J; Bosch, J; Bastide, R; Palanque, P; Roth, J

    2005-01-01

    Studies of software engineering projects show that a large number of usability related change requests are made after its deployment. Fixing usability problems during the later stages of development often proves to be costly, since many of the necessary changes require changes to the system that

  19. Software Application Profile: RVPedigree: a suite of family-based rare variant association tests for normally and non-normally distributed quantitative traits.

    Science.gov (United States)

    Oualkacha, Karim; Lakhal-Chaieb, Lajmi; Greenwood, Celia Mt

    2016-04-01

    RVPedigree (Rare Variant association tests in Pedigrees) implements a suite of programs facilitating genome-wide analysis of association between a quantitative trait and autosomal region-based genetic variation. The main features here are the ability to appropriately test for association of rare variants with non-normally distributed quantitative traits, and also to appropriately adjust for related individuals, either from families or from population structure and cryptic relatedness. RVPedigree is available as an R package. The package includes calculation of kinship matrices, various options for coping with non-normality, three different ways of estimating statistical significance incorporating triaging to enable efficient use of the most computationally-intensive calculations, and a parallelization option for genome-wide analysis. The software is available from the Comprehensive R Archive Network [CRAN.R-project.org] under the name 'RVPedigree' and at [https://github.com/GreenwoodLab]. It has been published under General Public License (GPL) version 3 or newer. © The Author 2016; all rights reserved. Published by Oxford University Press on behalf of the International Epidemiological Association.

  20. Development of a fatigue analysis software system

    International Nuclear Information System (INIS)

    Choi, B. I.; Lee, H. J.; Han, S. W.; Kim, J. Y.; Hwang, K. H.; Kang, J. Y.

    2001-01-01

    A general purpose fatigue analysis software to predict fatigue lives of mechanical components and structures was developed. This software has some characteristic features including functions of searching weak regions on the free surface in order to reduce computing time significantly, a database of fatigue properties for various materials, and an expert system which can assist any users to get more proper results. This software can be used in the environment consists of commercial finite element packages. Using the software developed fatigue analyses for a SAE keyhole specimen and an automobile knuckle were carried out. It was observed that the results were agree well with those from commercial packages

  1. Numerical methods in software and analysis

    CERN Document Server

    Rice, John R

    1992-01-01

    Numerical Methods, Software, and Analysis, Second Edition introduces science and engineering students to the methods, tools, and ideas of numerical computation. Introductory courses in numerical methods face a fundamental problem-there is too little time to learn too much. This text solves that problem by using high-quality mathematical software. In fact, the objective of the text is to present scientific problem solving using standard mathematical software. This book discusses numerous programs and software packages focusing on the IMSL library (including the PROTRAN system) and ACM Algorithm

  2. Software Process Improvement Using Force Field Analysis ...

    African Journals Online (AJOL)

    An improvement plan is then drawn and implemented. This paper studied the state of Nigerian software development organizations based on selected attributes. Force field analysis is used to partition the factors obtained into driving and restraining forces. An attempt was made to improve the software development process ...

  3. Software safety analysis practice in installation phase

    Energy Technology Data Exchange (ETDEWEB)

    Huang, H. W.; Chen, M. H.; Shyu, S. S., E-mail: hwhwang@iner.gov.t [Institute of Nuclear Energy Research, No. 1000 Wenhua Road, Chiaan Village, Longtan Township, 32546 Taoyuan County, Taiwan (China)

    2010-10-15

    This work performed a software safety analysis in the installation phase of the Lung men nuclear power plant in Taiwan, under the cooperation of Institute of Nuclear Energy Research and Tpc. The US Nuclear Regulatory Commission requests licensee to perform software safety analysis and software verification and validation in each phase of software development life cycle with Branch Technical Position 7-14. In this work, 37 safety grade digital instrumentation and control systems were analyzed by failure mode and effects analysis, which is suggested by IEEE standard 7-4.3.2-2003. During the installation phase, skew tests for safety grade network and point to point tests were performed. The failure mode and effects analysis showed all the single failure modes can be resolved by the redundant means. Most of the common mode failures can be resolved by operator manual actions. (Author)

  4. Software safety analysis practice in installation phase

    International Nuclear Information System (INIS)

    Huang, H. W.; Chen, M. H.; Shyu, S. S.

    2010-10-01

    This work performed a software safety analysis in the installation phase of the Lung men nuclear power plant in Taiwan, under the cooperation of Institute of Nuclear Energy Research and Tpc. The US Nuclear Regulatory Commission requests licensee to perform software safety analysis and software verification and validation in each phase of software development life cycle with Branch Technical Position 7-14. In this work, 37 safety grade digital instrumentation and control systems were analyzed by failure mode and effects analysis, which is suggested by IEEE standard 7-4.3.2-2003. During the installation phase, skew tests for safety grade network and point to point tests were performed. The failure mode and effects analysis showed all the single failure modes can be resolved by the redundant means. Most of the common mode failures can be resolved by operator manual actions. (Author)

  5. Computer-assisted qualitative data analysis software.

    Science.gov (United States)

    Cope, Diane G

    2014-05-01

    Advances in technology have provided new approaches for data collection methods and analysis for researchers. Data collection is no longer limited to paper-and-pencil format, and numerous methods are now available through Internet and electronic resources. With these techniques, researchers are not burdened with entering data manually and data analysis is facilitated by software programs. Quantitative research is supported by the use of computer software and provides ease in the management of large data sets and rapid analysis of numeric statistical methods. New technologies are emerging to support qualitative research with the availability of computer-assisted qualitative data analysis software (CAQDAS).CAQDAS will be presented with a discussion of advantages, limitations, controversial issues, and recommendations for this type of software use.

  6. Time Management in the Operating Room: An Analysis of the Dedicated Minimally Invasive Surgery Suite

    Science.gov (United States)

    Hsiao, Kenneth C.; Machaidze, Zurab

    2004-01-01

    Background: Dedicated minimally invasive surgery suites are available that contain specialized equipment to facilitate endoscopic surgery. Laparoscopy performed in a general operating room is hampered by the multitude of additional equipment that must be transported into the room. The objective of this study was to compare the preparation times between procedures performed in traditional operating rooms versus dedicated minimally invasive surgery suites to see whether operating room efficiency is improved in the specialized room. Methods: The records of 50 patients who underwent laparoscopic procedures between September 2000 and April 2002 were retrospectively reviewed. Twenty-three patients underwent surgery in a general operating room and 18 patients in an minimally invasive surgery suite. Nine patients were excluded because of cystoscopic procedures undergone prior to laparoscopy. Various time points were recorded from which various time intervals were derived, such as preanesthesia time, anesthesia induction time, and total preparation time. A 2-tailed, unpaired Student t test was used for statistical analysis. Results: The mean preanesthesia time was significantly faster in the minimally invasive surgery suite (12.2 minutes) compared with that in the traditional operating room (17.8 minutes) (P=0.013). Mean anesthesia induction time in the minimally invasive surgery suite (47.5 minutes) was similar to time in the traditional operating room (45.7 minutes) (P=0.734). The average total preparation time for the minimally invasive surgery suite (59.6 minutes) was not significantly faster than that in the general operating room (63.5 minutes) (P=0.481). Conclusion: The amount of time that elapses between the patient entering the room and anesthesia induction is statically shorter in a dedicated minimally invasive surgery suite. Laparoscopic surgery is performed more efficiently in a dedicated minimally invasive surgery suite versus a traditional operating room. PMID

  7. The VI-Suite: a set of environmental analysis tools with geospatial data applications

    NARCIS (Netherlands)

    Southall, Ryan; Biljecki, F.

    2017-01-01

    Background: The VI-Suite is a free and open-source addon for the 3D content creation application Blender, developed primarily as a tool for the contextual and performative analysis of buildings. Its functionality has grown from simple, static lighting analysis to fully parametric lighting,

  8. Software safety analysis application in installation phase

    International Nuclear Information System (INIS)

    Huang, H. W.; Yih, S.; Wang, L. H.; Liao, B. C.; Lin, J. M.; Kao, T. M.

    2010-01-01

    This work performed a software safety analysis (SSA) in the installation phase of the Lungmen nuclear power plant (LMNPP) in Taiwan, under the cooperation of INER and TPC. The US Nuclear Regulatory Commission (USNRC) requests licensee to perform software safety analysis (SSA) and software verification and validation (SV and V) in each phase of software development life cycle with Branch Technical Position (BTP) 7-14. In this work, 37 safety grade digital instrumentation and control (I and C) systems were analyzed by Failure Mode and Effects Analysis (FMEA), which is suggested by IEEE Standard 7-4.3.2-2003. During the installation phase, skew tests for safety grade network and point to point tests were performed. The FMEA showed all the single failure modes can be resolved by the redundant means. Most of the common mode failures can be resolved by operator manual actions. (authors)

  9. The UEA Small RNA Workbench: A Suite of Computational Tools for Small RNA Analysis.

    Science.gov (United States)

    Mohorianu, Irina; Stocks, Matthew Benedict; Applegate, Christopher Steven; Folkes, Leighton; Moulton, Vincent

    2017-01-01

    RNA silencing (RNA interference, RNAi) is a complex, highly conserved mechanism mediated by short, typically 20-24 nt in length, noncoding RNAs known as small RNAs (sRNAs). They act as guides for the sequence-specific transcriptional and posttranscriptional regulation of target mRNAs and play a key role in the fine-tuning of biological processes such as growth, response to stresses, or defense mechanism.High-throughput sequencing (HTS) technologies are employed to capture the expression levels of sRNA populations. The processing of the resulting big data sets facilitated the computational analysis of the sRNA patterns of variation within biological samples such as time point experiments, tissue series or various treatments. Rapid technological advances enable larger experiments, often with biological replicates leading to a vast amount of raw data. As a result, in this fast-evolving field, the existing methods for sequence characterization and prediction of interaction (regulatory) networks periodically require adapting or in extreme cases, a complete redesign to cope with the data deluge. In addition, the presence of numerous tools focused only on particular steps of HTS analysis hinders the systematic parsing of the results and their interpretation.The UEA small RNA Workbench (v1-4), described in this chapter, provides a user-friendly, modular, interactive analysis in the form of a suite of computational tools designed to process and mine sRNA datasets for interesting characteristics that can be linked back to the observed phenotypes. First, we show how to preprocess the raw sequencing output and prepare it for downstream analysis. Then we review some quality checks that can be used as a first indication of sources of variability between samples. Next we show how the Workbench can provide a comparison of the effects of different normalization approaches on the distributions of expression, enhanced methods for the identification of differentially expressed

  10. An integrative variant analysis suite for whole exome next-generation sequencing data

    Directory of Open Access Journals (Sweden)

    Challis Danny

    2012-01-01

    Full Text Available Abstract Background Whole exome capture sequencing allows researchers to cost-effectively sequence the coding regions of the genome. Although the exome capture sequencing methods have become routine and well established, there is currently a lack of tools specialized for variant calling in this type of data. Results Using statistical models trained on validated whole-exome capture sequencing data, the Atlas2 Suite is an integrative variant analysis pipeline optimized for variant discovery on all three of the widely used next generation sequencing platforms (SOLiD, Illumina, and Roche 454. The suite employs logistic regression models in conjunction with user-adjustable cutoffs to accurately separate true SNPs and INDELs from sequencing and mapping errors with high sensitivity (96.7%. Conclusion We have implemented the Atlas2 Suite and applied it to 92 whole exome samples from the 1000 Genomes Project. The Atlas2 Suite is available for download at http://sourceforge.net/projects/atlas2/. In addition to a command line version, the suite has been integrated into the Genboree Workbench, allowing biomedical scientists with minimal informatics expertise to remotely call, view, and further analyze variants through a simple web interface. The existing genomic databases displayed via the Genboree browser also streamline the process from variant discovery to functional genomics analysis, resulting in an off-the-shelf toolkit for the broader community.

  11. Software criticality analysis of COTS/SOUP

    International Nuclear Information System (INIS)

    Bishop, Peter; Bloomfield, Robin; Clement, Tim; Guerra, Sofia

    2003-01-01

    This paper describes the Software Criticality Analysis (SCA) approach that was developed to support the justification of using commercial off-the-shelf software (COTS) in a safety-related system. The primary objective of SCA is to assess the importance to safety of the software components within the COTS and to show there is segregation between software components with different safety importance. The approach taken was a combination of Hazops based on design documents and on a detailed analysis of the actual code (100 kloc). Considerable effort was spent on validation and ensuring the conservative nature of the results. The results from reverse engineering from the code showed that results based only on architecture and design documents would have been misleading

  12. Software criticality analysis of COTS/SOUP

    Energy Technology Data Exchange (ETDEWEB)

    Bishop, Peter; Bloomfield, Robin; Clement, Tim; Guerra, Sofia

    2003-09-01

    This paper describes the Software Criticality Analysis (SCA) approach that was developed to support the justification of using commercial off-the-shelf software (COTS) in a safety-related system. The primary objective of SCA is to assess the importance to safety of the software components within the COTS and to show there is segregation between software components with different safety importance. The approach taken was a combination of Hazops based on design documents and on a detailed analysis of the actual code (100 kloc). Considerable effort was spent on validation and ensuring the conservative nature of the results. The results from reverse engineering from the code showed that results based only on architecture and design documents would have been misleading.

  13. A tool to include gamma analysis software into a quality assurance program.

    Science.gov (United States)

    Agnew, Christina E; McGarry, Conor K

    2016-03-01

    To provide a tool to enable gamma analysis software algorithms to be included in a quality assurance (QA) program. Four image sets were created comprising two geometric images to independently test the distance to agreement (DTA) and dose difference (DD) elements of the gamma algorithm, a clinical step and shoot IMRT field and a clinical VMAT arc. The images were analysed using global and local gamma analysis with 2 in-house and 8 commercially available software encompassing 15 software versions. The effect of image resolution on gamma pass rates was also investigated. All but one software accurately calculated the gamma passing rate for the geometric images. Variation in global gamma passing rates of 1% at 3%/3mm and over 2% at 1%/1mm was measured between software and software versions with analysis of appropriately sampled images. This study provides a suite of test images and the gamma pass rates achieved for a selection of commercially available software. This image suite will enable validation of gamma analysis software within a QA program and provide a frame of reference by which to compare results reported in the literature from various manufacturers and software versions. Copyright © 2015. Published by Elsevier Ireland Ltd.

  14. Software

    Energy Technology Data Exchange (ETDEWEB)

    Macedo, R.; Budd, G.; Ross, E.; Wells, P.

    2010-07-15

    The software section of this journal presented new software programs that have been developed to help in the exploration and development of hydrocarbon resources. Software provider IHS Inc. has made additions to its geological and engineering analysis software tool, IHS PETRA, a product used by geoscientists and engineers to visualize, analyze and manage well production, well log, drilling, reservoir, seismic and other related information. IHS PETRA also includes a directional well module and a decline curve analysis module to improve analysis capabilities in unconventional reservoirs. Petris Technology Inc. has developed a software to help manage the large volumes of data. PetrisWinds Enterprise (PWE) helps users find and manage wellbore data, including conventional wireline and MWD core data; analysis core photos and images; waveforms and NMR; and external files documentation. Ottawa-based Ambercore Software Inc. has been collaborating with Nexen on the Petroleum iQ software for steam assisted gravity drainage (SAGD) producers. Petroleum iQ integrates geology and geophysics data with engineering data in 3D and 4D. Calgary-based Envirosoft Corporation has developed a software that reduces the costly and time-consuming effort required to comply with Directive 39 of the Alberta Energy Resources Conservation Board. The product includes an emissions modelling software. Houston-based Seismic Micro-Technology (SMT) has developed the Kingdom software that features the latest in seismic interpretation. Holland-based Joa Oil and Gas and Calgary-based Computer Modelling Group have both supplied the petroleum industry with advanced reservoir simulation software that enables reservoir interpretation. The 2010 software survey included a guide to new software applications designed to facilitate petroleum exploration, drilling and production activities. Oil and gas producers can use the products for a range of functions, including reservoir characterization and accounting. In

  15. Acoustic Emission Analysis Applet (AEAA) Software

    Science.gov (United States)

    Nichols, Charles T.; Roth, Don J.

    2013-01-01

    NASA Glenn Research and NASA White Sands Test Facility have developed software supporting an automated pressure vessel structural health monitoring (SHM) system based on acoustic emissions (AE). The software, referred to as the Acoustic Emission Analysis Applet (AEAA), provides analysts with a tool that can interrogate data collected on Digital Wave Corp. and Physical Acoustics Corp. software using a wide spectrum of powerful filters and charts. This software can be made to work with any data once the data format is known. The applet will compute basic AE statistics, and statistics as a function of time and pressure (see figure). AEAA provides value added beyond the analysis provided by the respective vendors' analysis software. The software can handle data sets of unlimited size. A wide variety of government and commercial applications could benefit from this technology, notably requalification and usage tests for compressed gas and hydrogen-fueled vehicles. Future enhancements will add features similar to a "check engine" light on a vehicle. Once installed, the system will ultimately be used to alert International Space Station crewmembers to critical structural instabilities, but will have little impact to missions otherwise. Diagnostic information could then be transmitted to experienced technicians on the ground in a timely manner to determine whether pressure vessels have been impacted, are structurally unsound, or can be safely used to complete the mission.

  16. A 'Toolbox' Equivalent Process for Safety Analysis Software

    International Nuclear Information System (INIS)

    O'Kula, K.R.; Eng, Tony

    2004-01-01

    Defense Nuclear Facilities Safety Board (DNFSB) Recommendation 2002-1 (Quality Assurance for Safety-Related Software) identified a number of quality assurance issues on the use of software in Department of Energy (DOE) facilities for analyzing hazards, and designing and operating controls that prevent or mitigate potential accidents. The development and maintenance of a collection, or 'toolbox', of multiple-site use, standard solution, Software Quality Assurance (SQA)-compliant safety software is one of the major improvements identified in the associated DOE Implementation Plan (IP). The DOE safety analysis toolbox will contain a set of appropriately quality-assured, configuration-controlled, safety analysis codes, recognized for DOE-broad, safety basis applications. Currently, six widely applied safety analysis computer codes have been designated for toolbox consideration. While the toolbox concept considerably reduces SQA burdens among DOE users of these codes, many users of unique, single-purpose, or single-site software may still have sufficient technical justification to continue use of their computer code of choice, but are thwarted by the multiple-site condition on toolbox candidate software. The process discussed here provides a roadmap for an equivalency argument, i.e., establishing satisfactory SQA credentials for single-site software that can be deemed ''toolbox-equivalent''. The process is based on the model established to meet IP Commitment 4.2.1.2: Establish SQA criteria for the safety analysis ''toolbox'' codes. Implementing criteria that establish the set of prescriptive SQA requirements are based on implementation plan/procedures from the Savannah River Site, also incorporating aspects of those from the Waste Isolation Pilot Plant (SNL component) and the Yucca Mountain Project. The major requirements are met with evidence of a software quality assurance plan, software requirements and design documentation, user's instructions, test report, a

  17. Introducing a New Software for Geodetic Analysis

    Science.gov (United States)

    Hjelle, Geir Arne; Dähnn, Michael; Fausk, Ingrid; Kirkvik, Ann-Silje; Mysen, Eirik

    2017-04-01

    At the Norwegian Mapping Authority, we are currently developing Where, a new software for geodetic analysis. Where is built on our experiences with the Geosat software, and will be able to analyse and combine data from VLBI, SLR, GNSS and DORIS. The software is mainly written in Python which has proved very fruitful. The code is quick to write and the architecture is easily extendable and maintainable, while at the same time taking advantage of well-tested code like the SOFA and IERS libraries. This presentation will show some of the current capabilities of Where, including benchmarks against other software packages, and outline our plans for further progress. In addition we will report on some investigations we have done experimenting with alternative weighting strategies for VLBI.

  18. Software for Graph Analysis and Visualization

    Directory of Open Access Journals (Sweden)

    M. I. Kolomeychenko

    2014-01-01

    Full Text Available This paper describes the software for graph storage, analysis and visualization. The article presents a comparative analysis of existing software for analysis and visualization of graphs, describes the overall architecture of application and basic principles of construction and operation of the main modules. Furthermore, a description of the developed graph storage oriented to storage and processing of large-scale graphs is presented. The developed algorithm for finding communities and implemented algorithms of autolayouts of graphs are the main functionality of the product. The main advantage of the developed software is high speed processing of large size networks (up to millions of nodes and links. Moreover, the proposed graph storage architecture is unique and has no analogues. The developed approaches and algorithms are optimized for operating with big graphs and have high productivity.

  19. Power and performance software analysis and optimization

    CERN Document Server

    Kukunas, Jim

    2015-01-01

    Power and Performance: Software Analysis and Optimization is a guide to solving performance problems in modern Linux systems. Power-efficient chips are no help if the software those chips run on is inefficient. Starting with the necessary architectural background as a foundation, the book demonstrates the proper usage of performance analysis tools in order to pinpoint the cause of performance problems, and includes best practices for handling common performance issues those tools identify. Provides expert perspective from a key member of Intel's optimization team on how processors and memory

  20. The emerging Web 2.0 social software: an enabling suite of sociable technologies in health and health care education.

    Science.gov (United States)

    Kamel Boulos, Maged N; Wheeler, Steve

    2007-03-01

    Web 2.0 sociable technologies and social software are presented as enablers in health and health care, for organizations, clinicians, patients and laypersons. They include social networking services, collaborative filtering, social bookmarking, folksonomies, social search engines, file sharing and tagging, mashups, instant messaging, and online multi-player games. The more popular Web 2.0 applications in education, namely wikis, blogs and podcasts, are but the tip of the social software iceberg. Web 2.0 technologies represent a quite revolutionary way of managing and repurposing/remixing online information and knowledge repositories, including clinical and research information, in comparison with the traditional Web 1.0 model. The paper also offers a glimpse of future software, touching on Web 3.0 (the Semantic Web) and how it could be combined with Web 2.0 to produce the ultimate architecture of participation. Although the tools presented in this review look very promising and potentially fit for purpose in many health care applications and scenarios, careful thinking, testing and evaluation research are still needed in order to establish 'best practice models' for leveraging these emerging technologies to boost our teaching and learning productivity, foster stronger 'communities of practice', and support continuing medical education/professional development (CME/CPD) and patient education.

  1. PIV/HPIV Film Analysis Software Package

    Science.gov (United States)

    Blackshire, James L.

    1997-01-01

    A PIV/HPIV film analysis software system was developed that calculates the 2-dimensional spatial autocorrelations of subregions of Particle Image Velocimetry (PIV) or Holographic Particle Image Velocimetry (HPIV) film recordings. The software controls three hardware subsystems including (1) a Kodak Megaplus 1.4 camera and EPIX 4MEG framegrabber subsystem, (2) an IEEE/Unidex 11 precision motion control subsystem, and (3) an Alacron I860 array processor subsystem. The software runs on an IBM PC/AT host computer running either the Microsoft Windows 3.1 or Windows 95 operating system. It is capable of processing five PIV or HPIV displacement vectors per second, and is completely automated with the exception of user input to a configuration file prior to analysis execution for update of various system parameters.

  2. Software for computerised analysis of cardiotocographic traces.

    Science.gov (United States)

    Romano, M; Bifulco, P; Ruffo, M; Improta, G; Clemente, F; Cesarelli, M

    2016-02-01

    Despite the widespread use of cardiotocography in foetal monitoring, the evaluation of foetal status suffers from a considerable inter and intra-observer variability. In order to overcome the main limitations of visual cardiotocographic assessment, computerised methods to analyse cardiotocographic recordings have been recently developed. In this study, a new software for automated analysis of foetal heart rate is presented. It allows an automatic procedure for measuring the most relevant parameters derivable from cardiotocographic traces. Simulated and real cardiotocographic traces were analysed to test software reliability. In artificial traces, we simulated a set number of events (accelerations, decelerations and contractions) to be recognised. In the case of real signals, instead, results of the computerised analysis were compared with the visual assessment performed by 18 expert clinicians and three performance indexes were computed to gain information about performances of the proposed software. The software showed preliminary performance we judged satisfactory in that the results matched completely the requirements, as proved by tests on artificial signals in which all simulated events were detected from the software. Performance indexes computed in comparison with obstetricians' evaluations are, on the contrary, not so satisfactory; in fact they led to obtain the following values of the statistical parameters: sensitivity equal to 93%, positive predictive value equal to 82% and accuracy equal to 77%. Very probably this arises from the high variability of trace annotation carried out by clinicians. Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.

  3. ATSAS 2.8: a comprehensive data analysis suite for small-angle scattering from macromolecular solutions.

    Science.gov (United States)

    Franke, D; Petoukhov, M V; Konarev, P V; Panjkovich, A; Tuukkanen, A; Mertens, H D T; Kikhney, A G; Hajizadeh, N R; Franklin, J M; Jeffries, C M; Svergun, D I

    2017-08-01

    ATSAS is a comprehensive software suite for the analysis of small-angle scattering data from dilute solutions of biological macromolecules or nanoparticles. It contains applications for primary data processing and assessment, ab initio bead modelling, and model validation, as well as methods for the analysis of flexibility and mixtures. In addition, approaches are supported that utilize information from X-ray crystallography, nuclear magnetic resonance spectroscopy or atomistic homology modelling to construct hybrid models based on the scattering data. This article summarizes the progress made during the 2.5-2.8 ATSAS release series and highlights the latest developments. These include AMBIMETER , an assessment of the reconstruction ambiguity of experimental data; DATCLASS , a multiclass shape classification based on experimental data; SASRES , for estimating the resolution of ab initio model reconstructions; CHROMIXS , a convenient interface to analyse in-line size exclusion chromatography data; SHANUM , to evaluate the useful angular range in measured data; SREFLEX , to refine available high-resolution models using normal mode analysis; SUPALM for a rapid superposition of low- and high-resolution models; and SASPy , the ATSAS plugin for interactive modelling in PyMOL . All these features and other improvements are included in the ATSAS release 2.8, freely available for academic users from https://www.embl-hamburg.de/biosaxs/software.html.

  4. GRACAT, Software for grounding and collision analysis

    DEFF Research Database (Denmark)

    Friis-Hansen, Peter; Simonsen, Bo Cerup

    2002-01-01

    and grounding accidents. The software consists of three basic analysis modules and one risk mitigation module: 1) frequency, 2) damage, and 3) consequence. These modules can be used individually or in series and the analyses can be performed in deterministic or probabilistic mode. Finally, in the mitigation...

  5. Development of Advanced Suite of Deterministic Codes for VHTR Physics Analysis

    Energy Technology Data Exchange (ETDEWEB)

    Kim, Kang Seog; Cho, J. Y.; Lee, K. H. (and others)

    2007-07-15

    Advanced Suites of deterministic codes for VHTR physics analysis has been developed for detailed analysis of current and advanced reactor designs as part of a US-ROK collaborative I-NERI project. These code suites include the conventional 2-step procedure in which a few group constants are generated by a transport lattice calculation, and the reactor physics analysis is performed by a 3-dimensional diffusion calculation, and a whole core transport code that can model local heterogeneities directly at the core level. Particular modeling issues in physics analysis of the gas-cooled VHTRs were resolved, which include a double heterogeneity of the coated fuel particles, a neutron streaming in the coolant channels, a strong core-reflector interaction, and large spectrum shifts due to changes of the surrounding environment, temperature and burnup. And the geometry handling capability of the DeCART code were extended to deal with the hexagonal fuel elements of the VHTR core. The developed code suites were validated and verified by comparing the computational results with those of the Monte Carlo calculations for the benchmark problems.

  6. A new software suite for NO2 vertical profile retrieval from ground-based zenith-sky spectrometers

    International Nuclear Information System (INIS)

    Denis, L.; Roscoe, H.K.; Chipperfield, M.P.; Roozendael, M. van; Goutail, F.

    2005-01-01

    Here we present an operational method to improve accuracy and information content of ground-based measurements of stratospheric NO 2 . The motive is to improve the investigation of trends in NO 2 , and is important because the current trend in NO 2 appears to contradict the trend in its source, suggesting that the stratospheric circulation has changed. To do so, a new software package for retrieving NO 2 vertical profiles from slant columns measured by zenith-sky spectrometers has been created. It uses a Rodgers optimal linear inverse method coupled with a radiative transfer model for calculations of transfer functions between profiles and columns, and a chemical box model for taking into account the NO 2 variations during twilight and during the day. Each model has parameters that vary according to season and location. Forerunners of each model have been previously validated. The scheme maps random errors in the measurements and systematic errors in the models and their parameters on to the retrieved profiles. Initialisation for models is derived from well-established climatologies. The software has been tested by comparing retrieved profiles to simultaneous balloon-borne profiles at mid-latitudes in spring

  7. A new software suite for NO{sub 2} vertical profile retrieval from ground-based zenith-sky spectrometers

    Energy Technology Data Exchange (ETDEWEB)

    Denis, L. [British Antarctic Survey/NERC, Madingley Road, Cambridge CB3 0ET (United Kingdom); Roscoe, H.K. [British Antarctic Survey/NERC, Madingley Road, Cambridge CB3 0ET (United Kingdom)]. E-mail: h.roscoe@bas.ac.uk; Chipperfield, M.P. [Environment Centre, University of Leeds, Leeds LS2 9JT (United Kingdom); Roozendael, M. van [Belgian Institute for Space Aeronomy (BIRA/IASB), 1180 Brussels (Belgium); Goutail, F. [Service d' Aeronomie du CNRS, BP3, 91271 Verrieres le Buisson (France)

    2005-05-15

    Here we present an operational method to improve accuracy and information content of ground-based measurements of stratospheric NO{sub 2}. The motive is to improve the investigation of trends in NO{sub 2}, and is important because the current trend in NO{sub 2} appears to contradict the trend in its source, suggesting that the stratospheric circulation has changed. To do so, a new software package for retrieving NO{sub 2} vertical profiles from slant columns measured by zenith-sky spectrometers has been created. It uses a Rodgers optimal linear inverse method coupled with a radiative transfer model for calculations of transfer functions between profiles and columns, and a chemical box model for taking into account the NO{sub 2} variations during twilight and during the day. Each model has parameters that vary according to season and location. Forerunners of each model have been previously validated. The scheme maps random errors in the measurements and systematic errors in the models and their parameters on to the retrieved profiles. Initialisation for models is derived from well-established climatologies. The software has been tested by comparing retrieved profiles to simultaneous balloon-borne profiles at mid-latitudes in spring.

  8. Residence time distribution software analysis. User's manual

    International Nuclear Information System (INIS)

    1996-01-01

    Radiotracer applications cover a wide range of industrial activities in chemical and metallurgical processes, water treatment, mineral processing, environmental protection and civil engineering. Experiment design, data acquisition, treatment and interpretation are the basic elements of tracer methodology. The application of radiotracers to determine impulse response as RTD as well as the technical conditions for conducting experiments in industry and in the environment create a need for data processing using special software. Important progress has been made during recent years in the preparation of software programs for data treatment and interpretation. The software package developed for industrial process analysis and diagnosis by the stimulus-response methods contains all the methods for data processing for radiotracer experiments

  9. Improving Software Systems By Flow Control Analysis

    Directory of Open Access Journals (Sweden)

    Piotr Poznanski

    2012-01-01

    Full Text Available Using agile methods during the implementation of the system that meets mission critical requirements can be a real challenge. The change in the system built of dozens or even hundreds of specialized devices with embedded software requires the cooperation of a large group of engineers. This article presents a solution that supports parallel work of groups of system analysts and software developers. Deployment of formal rules to the requirements written in natural language enables using formal analysis of artifacts being a bridge between software and system requirements. Formalism and textual form of requirements allowed the automatic generation of message flow graph for the (sub system, called the “big-picture-model”. Flow diagram analysis helped to avoid a large number of defects whose repair cost in extreme cases could undermine the legitimacy of agile methods in projects of this scale. Retrospectively, a reduction of technical debt was observed. Continuous analysis of the “big picture model” improves the control of the quality parameters of the software architecture. The article also tries to explain why the commercial platform based on UML modeling language may not be sufficient in projects of this complexity.

  10. Intraprocedural dataflow analysis for software product lines

    DEFF Research Database (Denmark)

    Brabrand, Claus; Ribeiro, Márcio; Tolêdo, Társis

    2013-01-01

    Software product lines (SPLs) developed using annotative approaches such as conditional compilation come with an inherent risk of constructing erroneous products. For this reason, it is essential to be able to analyze such SPLs. However, as dataflow analysis techniques are not able to deal with SP...... and memory characteristics on five qualitatively different SPLs. On our benchmarks, the combined analysis strategy is up to almost eight times faster than the brute-force approach....

  11. Automating risk analysis of software design models.

    Science.gov (United States)

    Frydman, Maxime; Ruiz, Guifré; Heymann, Elisa; César, Eduardo; Miller, Barton P

    2014-01-01

    The growth of the internet and networked systems has exposed software to an increased amount of security threats. One of the responses from software developers to these threats is the introduction of security activities in the software development lifecycle. This paper describes an approach to reduce the need for costly human expertise to perform risk analysis in software, which is common in secure development methodologies, by automating threat modeling. Reducing the dependency on security experts aims at reducing the cost of secure development by allowing non-security-aware developers to apply secure development with little to no additional cost, making secure development more accessible. To automate threat modeling two data structures are introduced, identification trees and mitigation trees, to identify threats in software designs and advise mitigation techniques, while taking into account specification requirements and cost concerns. These are the components of our model for automated threat modeling, AutSEC. We validated AutSEC by implementing it in a tool based on data flow diagrams, from the Microsoft security development methodology, and applying it to VOMS, a grid middleware component, to evaluate our model's performance.

  12. An ion beam analysis software based on ImageJ

    International Nuclear Information System (INIS)

    Udalagama, C.; Chen, X.; Bettiol, A.A.; Watt, F.

    2013-01-01

    The suit of techniques (RBS, STIM, ERDS, PIXE, IL, IF,…) available in ion beam analysis yields a variety of rich information. Typically, after the initial challenge of acquiring data we are then faced with the task of having to extract relevant information or to present the data in a format with the greatest impact. This process sometimes requires developing new software tools. When faced with such situations the usual practice at the Centre for Ion Beam Applications (CIBA) in Singapore has been to use our computational expertise to develop ad hoc software tools as and when we need them. It then became apparent that the whole ion beam community can benefit from such tools; specifically from a common software toolset that can be developed and maintained by everyone with freedom to use and allowance to modify. In addition to the benefits of readymade tools and sharing the onus of development, this also opens up the possibility for collaborators to access and analyse ion beam data without having to depend on an ion beam lab. This has the virtue of making the ion beam techniques more accessible to a broader scientific community. We have identified ImageJ as an appropriate software base to develop such a common toolset. In addition to being in the public domain and been setup for collaborative tool development, ImageJ is accompanied by hundreds of modules (plugins) that allow great breadth in analysis. The present work is the first step towards integrating ion beam analysis into ImageJ. Some of the features of the current version of the ImageJ ‘ion beam’ plugin are: (1) reading list mode or event-by-event files, (2) energy gates/sorts, (3) sort stacks, (4) colour function, (5) real time map updating, (6) real time colour updating and (7) median and average map creation

  13. An ion beam analysis software based on ImageJ

    Energy Technology Data Exchange (ETDEWEB)

    Udalagama, C., E-mail: chammika@nus.edu.sg [Centre for Ion Beam Applications (CIBA), Department of Physics, National University of Singapore, 2 Science Drive 3, Singapore 117 542 (Singapore); Chen, X.; Bettiol, A.A.; Watt, F. [Centre for Ion Beam Applications (CIBA), Department of Physics, National University of Singapore, 2 Science Drive 3, Singapore 117 542 (Singapore)

    2013-07-01

    The suit of techniques (RBS, STIM, ERDS, PIXE, IL, IF,…) available in ion beam analysis yields a variety of rich information. Typically, after the initial challenge of acquiring data we are then faced with the task of having to extract relevant information or to present the data in a format with the greatest impact. This process sometimes requires developing new software tools. When faced with such situations the usual practice at the Centre for Ion Beam Applications (CIBA) in Singapore has been to use our computational expertise to develop ad hoc software tools as and when we need them. It then became apparent that the whole ion beam community can benefit from such tools; specifically from a common software toolset that can be developed and maintained by everyone with freedom to use and allowance to modify. In addition to the benefits of readymade tools and sharing the onus of development, this also opens up the possibility for collaborators to access and analyse ion beam data without having to depend on an ion beam lab. This has the virtue of making the ion beam techniques more accessible to a broader scientific community. We have identified ImageJ as an appropriate software base to develop such a common toolset. In addition to being in the public domain and been setup for collaborative tool development, ImageJ is accompanied by hundreds of modules (plugins) that allow great breadth in analysis. The present work is the first step towards integrating ion beam analysis into ImageJ. Some of the features of the current version of the ImageJ ‘ion beam’ plugin are: (1) reading list mode or event-by-event files, (2) energy gates/sorts, (3) sort stacks, (4) colour function, (5) real time map updating, (6) real time colour updating and (7) median and average map creation.

  14. [Pitfalls in informed consent: a statistical analysis of malpractice law suits].

    Science.gov (United States)

    Echigo, Junko

    2014-05-01

    In medical malpractice law suits, the notion of informed consent is often relevant in assessing whether negligence can be attributed to the medical practitioner who has caused injury to a patient. Furthermore, it is not rare that courts award damages for a lack of appropriate informed consent alone. In this study, two results were arrived at from a statistical analysis of medical malpractice law suits. One, unexpectedly, was that the severity of a patient's illness made no significant difference to whether damages were awarded. The other was that cases of typical medical treatment that national medical insurance does not cover were involved significantly more often than insured treatment cases. In cases where damages were awarded, the courts required more disclosure and written documents of information by medical practitioners, especially about complications and adverse effects that the patient might suffer.

  15. Development of neutron activation analysis software

    International Nuclear Information System (INIS)

    Wang Liyu

    1987-10-01

    The software for quantitative neutron activation analysis was developed to run under the MS/DOS operating system. The programmes of the IBM/SPAN include: spectra file transfer from and to a Canberra Series 35 multichannel analyzer, spectrum evaluation routines, calibration subprogrammes, and quantitative analysis. The programmes for spectrum analysis include fitting routine for separation of multiple lines by reproducing the peak shape with a combination of Gaussian and exponential terms. The programmes were tested on an IBM/AT-compatible computer. The programmes and the sources are available costfree for the IAEA projects of Technical Cooperation. 7 refs, 3 figs

  16. IUE Data Analysis Software for Personal Computers

    Science.gov (United States)

    Thompson, R.; Caplinger, J.; Taylor, L.; Lawton , P.

    1996-01-01

    This report summarizes the work performed for the program titled, "IUE Data Analysis Software for Personal Computers" awarded under Astrophysics Data Program NRA 92-OSSA-15. The work performed was completed over a 2-year period starting in April 1994. As a result of the project, 450 IDL routines and eight database tables are now available for distribution for Power Macintosh computers and Personal Computers running Windows 3.1.

  17. Application of Metric-based Software Reliability Analysis to Example Software

    International Nuclear Information System (INIS)

    Kim, Man Cheol; Smidts, Carol

    2008-07-01

    The software reliability of TELLERFAST ATM software is analyzed by using two metric-based software reliability analysis methods, a state transition diagram-based method and a test coverage-based method. The procedures for the software reliability analysis by using the two methods and the analysis results are provided in this report. It is found that the two methods have a relation of complementary cooperation, and therefore further researches on combining the two methods to reflect the benefit of the complementary cooperative effect to the software reliability analysis are recommended

  18. Digital PIV (DPIV) Software Analysis System

    Science.gov (United States)

    Blackshire, James L.

    1997-01-01

    A software package was developed to provide a Digital PIV (DPIV) capability for NASA LaRC. The system provides an automated image capture, test correlation, and autocorrelation analysis capability for the Kodak Megaplus 1.4 digital camera system for PIV measurements. The package includes three separate programs that, when used together with the PIV data validation algorithm, constitutes a complete DPIV analysis capability. The programs are run on an IBM PC/AT host computer running either Microsoft Windows 3.1 or Windows 95 using a 'quickwin' format that allows simple user interface and output capabilities to the windows environment.

  19. R suite for the Reduction and Analysis of UFO Orbit Data

    Science.gov (United States)

    Campbell-Burns, P.; Kacerek, R.

    2016-02-01

    This paper presents work undertaken by UKMON to compile a suite of simple R scripts for the reduction and analysis of meteor data. The application of R in this context is by no means an original idea and there is no doubt that it has been used already in many reports to the IMO. However, we are unaware of any common libraries or shared resources available to the meteor community. By sharing our work we hope to stimulate interest and discussion. Graphs shown in this paper are illustrative and are based on current data from both EDMOND and UKMON.

  20. Specdata: Automated Analysis Software for Broadband Spectra

    Science.gov (United States)

    Oliveira, Jasmine N.; Martin-Drumel, Marie-Aline; McCarthy, Michael C.

    2017-06-01

    With the advancement of chirped-pulse techniques, broadband rotational spectra with a few tens to several hundred GHz of spectral coverage are now routinely recorded. When studying multi-component mixtures that might result, for example, with the use of an electrical discharge, lines of new chemical species are often obscured by those of known compounds, and analysis can be laborious. To address this issue, we have developed SPECdata, an open source, interactive tool which is designed to simplify and greatly accelerate the spectral analysis and discovery. Our software tool combines both automated and manual components that free the user from computation, while giving him/her considerable flexibility to assign, manipulate, interpret and export their analysis. The automated - and key - component of the new software is a database query system that rapidly assigns transitions of known species in an experimental spectrum. For each experiment, the software identifies spectral features, and subsequently assigns them to known molecules within an in-house database (Pickett .cat files, list of frequencies...), or those catalogued in Splatalogue (using automatic on-line queries). With suggested assignments, the control is then handed over to the user who can choose to accept, decline or add additional species. Data visualization, statistical information, and interactive widgets assist the user in making decisions about their data. SPECdata has several other useful features intended to improve the user experience. Exporting a full report of the analysis, or a peak file in which assigned lines are removed are among several options. A user may also save their progress to continue at another time. Additional features of SPECdata help the user to maintain and expand their database for future use. A user-friendly interface allows one to search, upload, edit or update catalog or experiment entries.

  1. Software development processes and analysis software: a mismatch and a novel framework

    International Nuclear Information System (INIS)

    Kelly, D.; Harauz, J.

    2011-01-01

    This paper discusses the salient characteristics of analysis software and the impact of those characteristics on its development. From this discussion, it can be seen that mainstream software development processes, usually characterized as Plan Driven or Agile, are built upon assumptions that are mismatched to the development and maintenance of analysis software. We propose a novel software development framework that would match the process normally observed in the development of analysis software. In the discussion of this framework, we suggest areas of research and directions for future work. (author)

  2. CMS Computing Software and Analysis Challenge 2006

    Energy Technology Data Exchange (ETDEWEB)

    De Filippis, N. [Dipartimento interateneo di Fisica M. Merlin and INFN Bari, Via Amendola 173, 70126 Bari (Italy)

    2007-10-15

    The CMS (Compact Muon Solenoid) collaboration is making a big effort to test the workflow and the dataflow associated with the data handling model. With this purpose the computing, software and analysis Challenge 2006, namely CSA06, started the 15th of September. It was a 50 million event exercise that included all the steps of the analysis chain, like the prompt reconstruction, the data streaming, calibration and alignment iterative executions, the data distribution to regional sites, up to the end-user analysis. Grid tools provided by the LCG project are also experimented to gain access to the data and the resources by providing a user friendly interface to the physicists submitting the production and the analysis jobs. An overview of the status and results of the CSA06 is presented in this work.

  3. CMS Computing Software and Analysis Challenge 2006

    International Nuclear Information System (INIS)

    De Filippis, N.

    2007-01-01

    The CMS (Compact Muon Solenoid) collaboration is making a big effort to test the workflow and the dataflow associated with the data handling model. With this purpose the computing, software and analysis Challenge 2006, namely CSA06, started the 15th of September. It was a 50 million event exercise that included all the steps of the analysis chain, like the prompt reconstruction, the data streaming, calibration and alignment iterative executions, the data distribution to regional sites, up to the end-user analysis. Grid tools provided by the LCG project are also experimented to gain access to the data and the resources by providing a user friendly interface to the physicists submitting the production and the analysis jobs. An overview of the status and results of the CSA06 is presented in this work

  4. Static analysis of software the abstract interpretation

    CERN Document Server

    Boulanger, Jean-Louis

    2013-01-01

    The existing literature currently available to students and researchers is very general, covering only the formal techniques of static analysis. This book presents real examples of the formal techniques called ""abstract interpretation"" currently being used in various industrial fields: railway, aeronautics, space, automotive, etc. The purpose of this book is to present students and researchers, in a single book, with the wealth of experience of people who are intrinsically involved in the realization and evaluation of software-based safety critical systems. As the authors are people curr

  5. A new paradigm for the development of analysis software

    International Nuclear Information System (INIS)

    Kelly, D.; Harauz, J.

    2012-01-01

    For the CANDU industry, analysis software is an important tool for scientists and engineers to examine issues related to safety, operation, and design. However, the software quality assurance approach currently used for these tools assumes the software is the delivered product. In this paper, we present a model that shifts the emphasis from software being the end-product to software being support for the end-product, the science. We describe a novel software development paradigm that supports this shift and provides the groundwork for re-examining the quality assurance practices used for analysis software. (author)

  6. Modularity analysis of automotive control software

    OpenAIRE

    Dajsuren, Y.; Brand, van den, M.G.J.; Serebrenik, A.

    2013-01-01

    A design language and tool like MATLAB/Simulink is used for the graphical modelling and simulation of automotive control software. As the functionality based on electronics and software systems increases in motor vehicles, it is becoming increasingly important for system/software architects and control engineers in the automotive industry to ensure the quality of the highly complex MATLAB/Simulink control software. For automotive software, modularity is recognized as being a crucial quality a...

  7. Development of Image Analysis Software of MAXI

    Science.gov (United States)

    Eguchi, S.; Ueda, Y.; Hiroi, K.; Isobe, N.; Sugizaki, M.; Suzuki, M.; Tomida, H.; Maxi Team

    2010-12-01

    Monitor of All-sky X-ray Image (MAXI) is an X-ray all-sky monitor, attached to the Japanese experiment module Kibo on the International Space Station. The main scientific goals of the MAXI mission include the discovery of X-ray novae followed by prompt alerts to the community (Negoro et al., in this conference), and production of X-ray all-sky maps and new source catalogs with unprecedented sensitivities. To extract the best capabilities of the MAXI mission, we are working on the development of detailed image analysis tools. We utilize maximum likelihood fitting to a projected sky image, where we take account of the complicated detector responses, such as the background and point spread functions (PSFs). The modeling of PSFs, which strongly depend on the orbit and attitude of MAXI, is a key element in the image analysis. In this paper, we present the status of our software development.

  8. STAR: Software Toolkit for Analysis Research

    International Nuclear Information System (INIS)

    Doak, J.E.; Prommel, J.M.; Whiteson, R.; Hoffbauer, B.L.; Thomas, T.R.; Helman, P.

    1993-01-01

    Analyzing vast quantities of data from diverse information sources is an increasingly important element for nonproliferation and arms control analysis. Much of the work in this area has used human analysts to assimilate, integrate, and interpret complex information gathered from various sources. With the advent of fast computers, we now have the capability to automate this process thereby shifting this burden away from humans. In addition, there now exist huge data storage capabilities which have made it possible to formulate large integrated databases comprising many thereabouts of information spanning a variety of subjects. We are currently designing a Software Toolkit for Analysis Research (STAR) to address these issues. The goal of STAR is to Produce a research tool that facilitates the development and interchange of algorithms for locating phenomena of interest to nonproliferation and arms control experts. One major component deals with the preparation of information. The ability to manage and effectively transform raw data into a meaningful form is a prerequisite for analysis by any methodology. The relevant information to be analyzed can be either unstructured text structured data, signals, or images. Text can be numerical and/or character, stored in raw data files, databases, streams of bytes, or compressed into bits in formats ranging from fixed, to character-delimited, to a count followed by content The data can be analyzed in real-time or batch mode. Once the data are preprocessed, different analysis techniques can be applied. Some are built using expert knowledge. Others are trained using data collected over a period of time. Currently, we are considering three classes of analyzers for use in our software toolkit: (1) traditional machine learning techniques, (2) the purely statistical system, and (3) expert systems

  9. Effective Results Analysis for the Similar Software Products’ Orthogonality

    Directory of Open Access Journals (Sweden)

    Ion Ivan

    2009-10-01

    Full Text Available It is defined the concept of similar software. There are established conditions of archiving the software components. It is carried out the orthogonality evaluation and the correlation between the orthogonality and the complexity of the homogenous software components is analyzed. Shall proceed to build groups of similar software products, belonging to the orthogonality intervals. There are presented in graphical form the results of the analysis. There are detailed aspects of the functioning of the software product allocated for the orthogonality.

  10. SIMPATIQCO: a server-based software suite which facilitates monitoring the time course of LC-MS performance metrics on Orbitrap instruments.

    Science.gov (United States)

    Pichler, Peter; Mazanek, Michael; Dusberger, Frederico; Weilnböck, Lisa; Huber, Christian G; Stingl, Christoph; Luider, Theo M; Straube, Werner L; Köcher, Thomas; Mechtler, Karl

    2012-11-02

    While the performance of liquid chromatography (LC) and mass spectrometry (MS) instrumentation continues to increase, applications such as analyses of complete or near-complete proteomes and quantitative studies require constant and optimal system performance. For this reason, research laboratories and core facilities alike are recommended to implement quality control (QC) measures as part of their routine workflows. Many laboratories perform sporadic quality control checks. However, successive and systematic longitudinal monitoring of system performance would be facilitated by dedicated automatic or semiautomatic software solutions that aid an effortless analysis and display of QC metrics over time. We present the software package SIMPATIQCO (SIMPle AuTomatIc Quality COntrol) designed for evaluation of data from LTQ Orbitrap, Q-Exactive, LTQ FT, and LTQ instruments. A centralized SIMPATIQCO server can process QC data from multiple instruments. The software calculates QC metrics supervising every step of data acquisition from LC and electrospray to MS. For each QC metric the software learns the range indicating adequate system performance from the uploaded data using robust statistics. Results are stored in a database and can be displayed in a comfortable manner from any computer in the laboratory via a web browser. QC data can be monitored for individual LC runs as well as plotted over time. SIMPATIQCO thus assists the longitudinal monitoring of important QC metrics such as peptide elution times, peak widths, intensities, total ion current (TIC) as well as sensitivity, and overall LC-MS system performance; in this way the software also helps identify potential problems. The SIMPATIQCO software package is available free of charge.

  11. Modularity analysis of automotive control software

    NARCIS (Netherlands)

    Dajsuren, Y.; Brand, van den M.G.J.; Serebrenik, A.

    2013-01-01

    A design language and tool like MATLAB/Simulink is used for the graphical modelling and simulation of automotive control software. As the functionality based on electronics and software systems increases in motor vehicles, it is becoming increasingly important for system/software architects and

  12. Elementary study on γ analysis software for low level measurement

    International Nuclear Information System (INIS)

    Ruan Guanglin; Huang Xianguo; Xing Shixiong

    2001-01-01

    The difficulty in using fashion γ analysis software in low level measurement is discussed. The ROI report file of ORTEC operation system has been chosen as interface file to write γ analysis software for low-level measurement. The author gives software flowchart and applied example and discusses the existent problems

  13. Variety in Performance: A comparative Analysis of Recorded Performances of Bach's Sixth Suite for Solo Cello from 1961 to 1998

    Directory of Open Access Journals (Sweden)

    Alistair Sung

    2011-08-01

    Full Text Available There exists a commonly held belief amongst musicologists that there has been a ―general globalisation of styles‖ within recorded performances of the latter half of the twentieth century. For many, this is evidenced by an increased interaction between mainstream (MS and historically informed performance (HIP practices as well as a general decrease in the diversity of performances. Through a comparative aural and software-assisted analysis and measurement of performance features such as tempo, rhythmic flexibility, vibrato, portamento, bowing, and articulation in key interpretations of Bach‘s Suite No. 6 for Solo Cello recorded in between 1961 and 1998, this study investigates the relationship between MS and HIP performances in the latter half of the 20th century. By limiting analyses to those performers who have made two recordings during the designated period (Tortelier, Starker, Bylsma, Ma, Wispelwey, it has been possible to identify overarching trends and individual differences. These have been examined with reference to their broader social and cultural context in order to test commonly held musicological assumptions about the modernist and postmodernist foundations of performances from this era. The results indicate that by the 1990s increased interaction between MS and HIP practices has resulted in a wider variety of differing performances and that this can be seen to be symptomatic of the postmodern condition that has become prevalent since the last decade of the 20th century.

  14. Visual querying and analysis of large software repositories

    NARCIS (Netherlands)

    Voinea, Lucian; Telea, Alexandru

    We present a software framework for mining software repositories. Our extensible framework enables the integration of data extraction from repositories with data analysis and interactive visualization. We demonstrate the applicability of the framework by presenting several case studies performed on

  15. Image processing and analysis software development

    International Nuclear Information System (INIS)

    Shahnaz, R.

    1999-01-01

    The work presented in this project is aimed at developing a software 'IMAGE GALLERY' to investigate various image processing and analysis techniques. The work was divided into two parts namely the image processing techniques and pattern recognition, which further comprised of character and face recognition. Various image enhancement techniques including negative imaging, contrast stretching, compression of dynamic, neon, diffuse, emboss etc. have been studied. Segmentation techniques including point detection, line detection, edge detection have been studied. Also some of the smoothing and sharpening filters have been investigated. All these imaging techniques have been implemented in a window based computer program written in Visual Basic Neural network techniques based on Perception model have been applied for face and character recognition. (author)

  16. Software applications for flux balance analysis.

    Science.gov (United States)

    Lakshmanan, Meiyappan; Koh, Geoffrey; Chung, Bevan K S; Lee, Dong-Yup

    2014-01-01

    Flux balance analysis (FBA) is a widely used computational method for characterizing and engineering intrinsic cellular metabolism. The increasing number of its successful applications and growing popularity are possibly attributable to the availability of specific software tools for FBA. Each tool has its unique features and limitations with respect to operational environment, user-interface and supported analysis algorithms. Presented herein is an in-depth evaluation of currently available FBA applications, focusing mainly on usability, functionality, graphical representation and inter-operability. Overall, most of the applications are able to perform basic features of model creation and FBA simulation. COBRA toolbox, OptFlux and FASIMU are versatile to support advanced in silico algorithms to identify environmental and genetic targets for strain design. SurreyFBA, WEbcoli, Acorn, FAME, GEMSiRV and MetaFluxNet are the distinct tools which provide the user friendly interfaces in model handling. In terms of software architecture, FBA-SimVis and OptFlux have the flexible environments as they enable the plug-in/add-on feature to aid prospective functional extensions. Notably, an increasing trend towards the implementation of more tailored e-services such as central model repository and assistance to collaborative efforts was observed among the web-based applications with the help of advanced web-technologies. Furthermore, most recent applications such as the Model SEED, FAME, MetaFlux and MicrobesFlux have even included several routines to facilitate the reconstruction of genome-scale metabolic models. Finally, a brief discussion on the future directions of FBA applications was made for the benefit of potential tool developers.

  17. Standardizing Activation Analysis: New Software for Photon Activation Analysis

    Science.gov (United States)

    Sun, Z. J.; Wells, D.; Segebade, C.; Green, J.

    2011-06-01

    Photon Activation Analysis (PAA) of environmental, archaeological and industrial samples requires extensive data analysis that is susceptible to error. For the purpose of saving time, manpower and minimizing error, a computer program was designed, built and implemented using SQL, Access 2007 and asp.net technology to automate this process. Based on the peak information of the spectrum and assisted by its PAA library, the program automatically identifies elements in the samples and calculates their concentrations and respective uncertainties. The software also could be operated in browser/server mode, which gives the possibility to use it anywhere the internet is accessible. By switching the nuclide library and the related formula behind, the new software can be easily expanded to neutron activation analysis (NAA), charged particle activation analysis (CPAA) or proton-induced X-ray emission (PIXE). Implementation of this would standardize the analysis of nuclear activation data. Results from this software were compared to standard PAA analysis with excellent agreement. With minimum input from the user, the software has proven to be fast, user-friendly and reliable.

  18. Standardizing Activation Analysis: New Software for Photon Activation Analysis

    International Nuclear Information System (INIS)

    Sun, Z. J.; Wells, D.; Green, J.; Segebade, C.

    2011-01-01

    Photon Activation Analysis (PAA) of environmental, archaeological and industrial samples requires extensive data analysis that is susceptible to error. For the purpose of saving time, manpower and minimizing error, a computer program was designed, built and implemented using SQL, Access 2007 and asp.net technology to automate this process. Based on the peak information of the spectrum and assisted by its PAA library, the program automatically identifies elements in the samples and calculates their concentrations and respective uncertainties. The software also could be operated in browser/server mode, which gives the possibility to use it anywhere the internet is accessible. By switching the nuclide library and the related formula behind, the new software can be easily expanded to neutron activation analysis (NAA), charged particle activation analysis (CPAA) or proton-induced X-ray emission (PIXE). Implementation of this would standardize the analysis of nuclear activation data. Results from this software were compared to standard PAA analysis with excellent agreement. With minimum input from the user, the software has proven to be fast, user-friendly and reliable.

  19. LANDSAFE: LANDING SITE RISK ANALYSIS SOFTWARE FRAMEWORK

    Directory of Open Access Journals (Sweden)

    R. Schmidt

    2012-08-01

    Full Text Available The European Space Agency (ESA is planning a Lunar Lander mission in the 2018 timeframe that will demonstrate precise soft landing at the polar regions of the Moon. To ensure a safe and successful landing a careful risk analysis has to be carried out. This is comprised of identifying favorable target areas and evaluating the surface conditions in these areas. Features like craters, boulders, steep slopes, rough surfaces and shadow areas have to be identified in order to assess the risk associated to a landing site in terms of a successful touchdown and subsequent surface operation of the lander. In addition, global illumination conditions at the landing site have to be simulated and analyzed. The Landing Site Risk Analysis software framework (LandSAfe is a system for the analysis, selection and certification of safe landing sites on the lunar surface. LandSAfe generates several data products including high resolution digital terrain models (DTMs, hazard maps, illumination maps, temperature maps and surface reflectance maps which assist the user in evaluating potential landing site candidates. This paper presents the LandSAfe system and describes the methods and products of the different modules. For one candidate landing site on the rim of Shackleton crater at the south pole of the Moon a high resolution DTM is showcased.

  20. Developing a Comprehensive Software Suite for Advanced Reactor Performance and Safety Analysis

    International Nuclear Information System (INIS)

    Pointer, W. David; Billings, J.; Bradley, K.; Fischer, P.; Smith, M.; Tautges, T.; Jain, R.; Obabko, A.; Ferencz, R.; Martineau, R.

    2013-01-01

    The objective of the NEAMS program is to enable the design of future nuclear power stations and reactor cores: • Implement enhanced safety and security features; • Enable more cost effectively producing power; • Plan for better utilization natural resources

  1. Software patterns, knowledge maps, and domain analysis

    CERN Document Server

    Fayad, Mohamed E; Hegde, Srikanth GK; Basia, Anshu; Vakil, Ashka

    2014-01-01

    Preface AcknowledgmentsAuthors INTRODUCTIONAn Overview of Knowledge MapsIntroduction: Key Concepts-Software Stable Models, Knowledge Maps, Pattern Language, Goals, Capabilities (Enduring Business Themes + Business Objects) The Motivation The Problem The Objectives Overview of Software Stability Concepts Overview of Knowledge Maps Pattern Languages versus Knowledge Maps: A Brief ComparisonThe Solution Knowledge Maps Methodology or Concurrent Software Development ModelWhy Knowledge Maps? Research Methodology Undertaken Research Verification and Validation The Stratification of This Book Summary

  2. The SAVI Vulnerability Analysis Software Package

    International Nuclear Information System (INIS)

    Mc Aniff, R.J.; Paulus, W.K.; Key, B.; Simpkins, B.

    1987-01-01

    SAVI (Systematic Analysis of Vulnerability to Intrusion) is a new PC-based software package for modeling Physical Protection Systems (PPS). SAVI utilizes a path analysis approach based on the Adversary Sequence Diagram (ASD) methodology. A highly interactive interface allows the user to accurately model complex facilities, maintain a library of these models on disk, and calculate the most vulnerable paths through any facility. Recommendations are provided to help the user choose facility upgrades which should reduce identified path vulnerabilities. Pop-up windows throughout SAVI are used for the input and display of information. A menu at the top of the screen presents all options to the user. These options are further explained on a message line directly below the menu. A diagram on the screen graphically represents the current protection system model. All input is checked for errors, and data are presented in a logical and clear manner. Print utilities provide the user with hard copies of all information and calculated results

  3. Social network analysis in software process improvement

    DEFF Research Database (Denmark)

    Nielsen, Peter Axel; Tjørnehøj, Gitte

    2010-01-01

    Software process improvement in small organisation is often problematic and communication and knowledge sharing is more informal. To improve software processes we need to understand how they communicate and share knowledge. In this article have studied the company SmallSoft through action research...

  4. Effective Results Analysis for the Similar Software Products’ Orthogonality

    OpenAIRE

    Ion Ivan; Daniel Milodin

    2009-01-01

    It is defined the concept of similar software. There are established conditions of archiving the software components. It is carried out the orthogonality evaluation and the correlation between the orthogonality and the complexity of the homogenous software components is analyzed. Shall proceed to build groups of similar software products, belonging to the orthogonality intervals. There are presented in graphical form the results of the analysis. There are detailed aspects of the functioning o...

  5. COMPARATIVE ANALYSIS OF SOFTWARE DEVELOPMENT MODELS

    OpenAIRE

    Sandeep Kaur*

    2017-01-01

    No geek is unfamiliar with the concept of software development life cycle (SDLC). This research deals with the various SDLC models covering waterfall, spiral, and iterative, agile, V-shaped, prototype model. In the modern era, all the software systems are fallible as they can’t stand with certainty. So, it is tried to compare all aspects of the various models, their pros and cons so that it could be easy to choose a particular model at the time of need

  6. CAX a software for automated spectrum analysis

    International Nuclear Information System (INIS)

    Zahn, Guilherme S.; Genezini, Frederico A.

    2017-01-01

    In this work, the scripting capabilities of Genie-2000 were used to develop a software that automatically analyses all spectrum files in either Ortec's CHN or Canberra's MCA or CNF formats in a folder, generating two output files: a print-ready text le (.DAT) and a Comma-Separated Values (.CSV) le which can be easily imported in any major spreadsheet software. This software, named CAX ('Convert and Analyse for eXcel'), uses Genie-2000's functions to import spectrum files into Genie's native CNF format and analyze the converted spectra. The software can also, if requested, import energy and FWHM calibrations from a stored calibrated spectrum. The print-ready output le (.DAT) is generated by Genie-2000 using a customized script, and the CSV le is generated by a custom-built DAT2CSV software which generates a CSV le that complies to the Brazilian standards, with commas as a decimal indicator and semicolons as eld separators. This software is already used in the daily routines in IPEN's Neutron Activation Laboratory, greatly reducing the time required for sample analyses, as well as reducing the possibility of transcription errors. (author)

  7. CAX a software for automated spectrum analysis

    Energy Technology Data Exchange (ETDEWEB)

    Zahn, Guilherme S.; Genezini, Frederico A., E-mail: gzahn@ipen.br [Instituto de Pesquisas Energeticas e Nucleares (CRPq/IPEN/CNEN-SP), Sao Paulo, SP (Brazil). Centro do Reator de Pesquisas

    2017-11-01

    In this work, the scripting capabilities of Genie-2000 were used to develop a software that automatically analyses all spectrum files in either Ortec's CHN or Canberra's MCA or CNF formats in a folder, generating two output files: a print-ready text le (.DAT) and a Comma-Separated Values (.CSV) le which can be easily imported in any major spreadsheet software. This software, named CAX ('Convert and Analyse for eXcel'), uses Genie-2000's functions to import spectrum files into Genie's native CNF format and analyze the converted spectra. The software can also, if requested, import energy and FWHM calibrations from a stored calibrated spectrum. The print-ready output le (.DAT) is generated by Genie-2000 using a customized script, and the CSV le is generated by a custom-built DAT2CSV software which generates a CSV le that complies to the Brazilian standards, with commas as a decimal indicator and semicolons as eld separators. This software is already used in the daily routines in IPEN's Neutron Activation Laboratory, greatly reducing the time required for sample analyses, as well as reducing the possibility of transcription errors. (author)

  8. Development of a New VLBI Data Analysis Software

    Science.gov (United States)

    Bolotin, Sergei; Gipson, John M.; MacMillan, Daniel S.

    2010-01-01

    We present an overview of a new VLBI analysis software under development at NASA GSFC. The new software will replace CALC/SOLVE and many related utility programs. It will have the capabilities of the current system as well as incorporate new models and data analysis techniques. In this paper we give a conceptual overview of the new software. We formulate the main goals of the software. The software should be flexible and modular to implement models and estimation techniques that currently exist or will appear in future. On the other hand it should be reliable and possess production quality for processing standard VLBI sessions. Also, it needs to be capable of processing observations from a fully deployed network of VLBI2010 stations in a reasonable time. We describe the software development process and outline the software architecture.

  9. The Combustion Experiment on the Sample Analysis at Mars (SAM) Instrument Suite on the Curiosity Rover

    Science.gov (United States)

    Stern, J. C.; Malespin, C. A.; Eigenbrode, J. L.; Graham, H. V.; Archer, P. D., Jr.; Brunner, A. E.; Freissinet, C.; Franz, H. B.; Fuentes, J.; Glavin, D. P.; hide

    2014-01-01

    The combustion experiment on the Sample Analysis at Mars (SAM) suite on Curiosity will heat a sample of Mars regolith in the presence of oxygen and measure composition of the evolved gases using quadrupole mass spectrometry (QMS) and tunable laser spectrometry (TLS). QMS will enable detection of combustion products such as CO, CO2, NO, and other oxidized species, while TLS will enable precise measurements of the abundance and carbon isotopic composition (delta(sup 13)C) of the evolved CO2 and hydrogen isotopic composition (deltaD) of H2O. SAM will perform a two-step combustion to isolate combustible materials below approx.550 C and above approx.550 C. The combustion experiment on SAM, if properly designed and executed, has the potential to answer multiple questions regarding the origins of volatiles seen thus far in SAM evolved gas analysis (EGA) on Mars. Constraints imposed by SAM and MSL time and power resources, as well as SAM consumables (oxygen gas), will limit the number of SAM combustion experiments, so it is imperative to design an experiment targeting the most pressing science questions. Low temperature combustion experiments will primarily target the quantification of carbon (and nitrogen) contributed by SAM wet chemistry reagants MTBSTFA (N-Methyl-N-tert-butyldimethylsilyltrifluoroacetamide) and DMF (Dimethylformamide), which have been identified in the background of blank and sample runs and may adsorb to the sample while the cup is in the Sample Manipulation System (SMS). In addition, differences between the sample and "blank" may yield information regarding abundance and delta(sup 13)C of bulk (both organic and inorganic) martian carbon. High temperature combustion experiments primarily aim to detect refractory organic matter, if present in Cumberland fines, as well as address the question of quantification and deltaD value of water evolution associated with hydroxyl hydrogen in clay minerals.

  10. Continuous software quality analysis for the ATLAS experiment

    CERN Document Server

    Washbrook, Andrew; The ATLAS collaboration

    2017-01-01

    The software for the ATLAS experiment on the Large Hadron Collider at CERN has evolved over many years to meet the demands of Monte Carlo simulation, particle detector reconstruction and data analysis. At present over 3.8 million lines of C++ code (and close to 6 million total lines of code) are maintained by an active worldwide developer community. In order to run the experiment software efficiently at hundreds of computing centres it is essential to maintain a high level of software quality standards. The methods proposed to improve software quality practices by incorporating checks into the new ATLAS software build infrastructure.

  11. Software Piracy in Research: A Moral Analysis.

    Science.gov (United States)

    Santillanes, Gary; Felder, Ryan Marshall

    2015-08-01

    Researchers in virtually every discipline rely on sophisticated proprietary software for their work. However, some researchers are unable to afford the licenses and instead procure the software illegally. We discuss the prohibition of software piracy by intellectual property laws, and argue that the moral basis for the copyright law offers the possibility of cases where software piracy may be morally justified. The ethics codes that scientific institutions abide by are informed by a rule-consequentialist logic: by preserving personal rights to authored works, people able to do so will be incentivized to create. By showing that the law has this rule-consequentialist grounding, we suggest that scientists who blindly adopt their institutional ethics codes will commit themselves to accepting that software piracy could be morally justified, in some cases. We hope that this conclusion will spark debate over important tensions between ethics codes, copyright law, and the underlying moral basis for these regulations. We conclude by offering practical solutions (other than piracy) for researchers.

  12. A proposal for performing software safety hazard analysis

    International Nuclear Information System (INIS)

    Lawrence, J.D.; Gallagher, J.M.

    1997-01-01

    Techniques for analyzing the safety and reliability of analog-based electronic protection systems that serve to mitigate hazards in process control systems have been developed over many years, and are reasonably understood. An example is the protection system in a nuclear power plant. The extension of these techniques to systems which include digital computers is not well developed, and there is little consensus among software engineering experts and safety experts on how to analyze such systems. One possible technique is to extend hazard analysis to include digital computer-based systems. Software is frequently overlooked during system hazard analyses, but this is unacceptable when the software is in control of a potentially hazardous operation. In such cases, hazard analysis should be extended to fully cover the software. A method for performing software hazard analysis is proposed in this paper. The method concentrates on finding hazards during the early stages of the software life cycle, using an extension of HAZOP

  13. INFOS: spectrum fitting software for NMR analysis

    Energy Technology Data Exchange (ETDEWEB)

    Smith, Albert A., E-mail: alsi@nmr.phys.chem.ethz.ch [ETH Zürich, Physical Chemistry (Switzerland)

    2017-02-15

    Software for fitting of NMR spectra in MATLAB is presented. Spectra are fitted in the frequency domain, using Fourier transformed lineshapes, which are derived using the experimental acquisition and processing parameters. This yields more accurate fits compared to common fitting methods that use Lorentzian or Gaussian functions. Furthermore, a very time-efficient algorithm for calculating and fitting spectra has been developed. The software also performs initial peak picking, followed by subsequent fitting and refinement of the peak list, by iteratively adding and removing peaks to improve the overall fit. Estimation of error on fitting parameters is performed using a Monte-Carlo approach. Many fitting options allow the software to be flexible enough for a wide array of applications, while still being straightforward to set up with minimal user input.

  14. Fabrication and performance analysis of a DEA cuff designed for dry-suit applications

    International Nuclear Information System (INIS)

    Ahmadi, S; Camacho Mattos, A; Barbazza, A; Soleimani, M; Boscariol, P; Menon, C

    2013-01-01

    A method for manufacturing a cylindrical dielectric elastomer actuator (DEA) is presented. The cylindrical DEA can be used in fabricating the cuff area of dry-suits where the garment is very tight and wearing the suit is difficult. When electrically actuated, the DEA expands radially and the suit can be worn more comfortably. In order to study the performance of the DEA, a customized testing setup was designed, and silicone-made cuff samples with different material stiffnesses were tested. Analytical and FEM modeling were considered to evaluate the experimental output. The results revealed that although the stiffness of the DEA material has a direct relationship with the radial constrictive pressure caused by mechanically stretching the DEA, it has a minor effect on the actuation pressure. It was also found that stacking multiple layers of the DEA to fabricate a laminated structure enabled the attainment of a desired variation of pressure required for the implementation of an electrically tunable cuff. (paper)

  15. The decommissioning and demolition of four suites of high active chemical analysis cells at DNPDE

    International Nuclear Information System (INIS)

    Black, R.M.; Spence, B.W.; Stewart, C.W.

    1987-11-01

    The decommissioning and demolition of four laboratory suites of high active cells at DNPDE is described. All four suites had suffered drain leaks of high active liquor into underfloor ducts; the options available at the time and current policy for dealing with the resultant activity deposits are given. The decommissioning procedures are detailed to provide information for future similar exercises. Features to ease demolition of such facilities and to eliminate the possibility of long term activity deposition from drain leaks are highlighted for incorporation in future designs. The waste arisings and radiation doses received during the work are tabulated. (author)

  16. A graphical user interface for RAId, a knowledge integrated proteomics analysis suite with accurate statistics.

    Science.gov (United States)

    Joyce, Brendan; Lee, Danny; Rubio, Alex; Ogurtsov, Aleksey; Alves, Gelio; Yu, Yi-Kuo

    2018-03-15

    RAId is a software package that has been actively developed for the past 10 years for computationally and visually analyzing MS/MS data. Founded on rigorous statistical methods, RAId's core program computes accurate E-values for peptides and proteins identified during database searches. Making this robust tool readily accessible for the proteomics community by developing a graphical user interface (GUI) is our main goal here. We have constructed a graphical user interface to facilitate the use of RAId on users' local machines. Written in Java, RAId_GUI not only makes easy executions of RAId but also provides tools for data/spectra visualization, MS-product analysis, molecular isotopic distribution analysis, and graphing the retrieval versus the proportion of false discoveries. The results viewer displays and allows the users to download the analyses results. Both the knowledge-integrated organismal databases and the code package (containing source code, the graphical user interface, and a user manual) are available for download at https://www.ncbi.nlm.nih.gov/CBBresearch/Yu/downloads/raid.html .

  17. The Einstein Suite: A Web-Based Tool for Rapid and Collaborative Engineering Design and Analysis

    Science.gov (United States)

    Palmer, Richard S.

    1997-01-01

    Taken together the components of the Einstein Suite provide two revolutionary capabilities - they have the potential to change the way engineering and financial engineering are performed by: (1) providing currently unavailable functionality, and (2) providing a 10-100 times improvement over currently available but impractical or costly functionality.

  18. Research and Development on Food Nutrition Statistical Analysis Software System

    OpenAIRE

    Du Li; Ke Yun

    2013-01-01

    Designing and developing a set of food nutrition component statistical analysis software can realize the automation of nutrition calculation, improve the nutrition processional professional’s working efficiency and achieve the informatization of the nutrition propaganda and education. In the software development process, the software engineering method and database technology are used to calculate the human daily nutritional intake and the intelligent system is used to evaluate the user’s hea...

  19. Cost and Morbidity Analysis of Chest Port Insertion: Interventional Radiology Suite Versus Operating Room.

    Science.gov (United States)

    LaRoy, Jennifer R; White, Sarah B; Jayakrishnan, Thejus; Dybul, Stephanie; Ungerer, Dirk; Turaga, Kiran; Patel, Parag J

    2015-06-01

    To compare complications and cost, from a hospital perspective, of chest port insertions performed in an interventional radiology (IR) suite versus in surgery in an operating room (OR). This study was approved by an institutional review board and is HIPAA compliant. Medical records were retrospectively searched on consecutive chest port placement procedures, in the IR suite and the OR, between October 22, 2010 and February 26, 2013, to determine patients' demographic information and chest port-related complications and/or infections. A total of 478 charts were reviewed (age range: 21-85 years; 309 women, 169 men). Univariate and bivariate analyses were performed to identify risk factors associated with an increased complication rate. Cost data on 149 consecutive Medicare outpatients (100 treated in the IR suite; 49 treated in the OR) who had isolated chest port insertions between March 2012 and February 2013 were obtained for both the operative services and pharmacy. Nonparametric tests for heterogeneity were performed using the Kruskal-Wallis method. Early complications occurred in 9.2% (22 of 239) of the IR patients versus 13.4% (32 of 239) of the OR patients. Of the 478 implanted chest ports, 9 placed in IR and 18 placed in surgery required early removal. Infections from the ports placed in IR versus the OR were 0.25 versus 0.18 infections per 1000 catheters, respectively. Overall mean costs for chest port insertion were significantly higher in the OR, for both room and pharmacy costs (P chest ports in an OR setting was almost twice that of placement in the IR suite. Hospital costs to place a chest port were significantly lower in the IR suite than in the OR, whereas radiology and surgery patients did not show a significantly different rate of complications and/or infections. Copyright © 2015 American College of Radiology. Published by Elsevier Inc. All rights reserved.

  20. Cross-instrument Analysis Correlation Software

    Energy Technology Data Exchange (ETDEWEB)

    2017-06-28

    This program has been designed to assist with the tracking of a sample from one analytical instrument to another such as SEM, microscopes, micro x-ray diffraction and other instruments where particular positions/locations on the sample are examined, photographed, etc. The software is designed to easily enter the position of fiducials and locations of interest such that in a future session in the same of different instrument the positions of interest can be re-found through using the known location fiducials in the current and reference session to transform the point into the current sessions coordinate system. The software is dialog box driven guiding the user through the necessary data entry and program choices. Information is stored in a series of text based extensible markup language (XML) files.

  1. Nuclear Fuel Depletion Analysis Using Matlab Software

    Science.gov (United States)

    Faghihi, F.; Nematollahi, M. R.

    Coupled first order IVPs are frequently used in many parts of engineering and sciences. In this article, we presented a code including three computer programs which are joint with the Matlab software to solve and plot the solutions of the first order coupled stiff or non-stiff IVPs. Some engineering and scientific problems related to IVPs are given and fuel depletion (production of the 239Pu isotope) in a Pressurized Water Nuclear Reactor (PWR) are computed by the present code.

  2. A study of software safety analysis system for safety-critical software

    International Nuclear Information System (INIS)

    Chang, H. S.; Shin, H. K.; Chang, Y. W.; Jung, J. C.; Kim, J. H.; Han, H. H.; Son, H. S.

    2004-01-01

    The core factors and requirements for the safety-critical software traced and the methodology adopted in each stage of software life cycle are presented. In concept phase, Failure Modes and Effects Analysis (FMEA) for the system has been performed. The feasibility evaluation of selected safety parameter was performed and Preliminary Hazards Analysis list was prepared using HAZOP(Hazard and Operability) technique. And the check list for management control has been produced via walk-through technique. Based on the evaluation of the check list, activities to be performed in requirement phase have been determined. In the design phase, hazard analysis has been performed to check the safety capability of the system with regard to safety software algorithm using Fault Tree Analysis (FTA). In the test phase, the test items based on FMEA have been checked for fitness guided by an accident scenario. The pressurizer low pressure trip algorithm has been selected to apply FTA method to software safety analysis as a sample. By applying CASE tool, the requirements traceability of safety critical system has been enhanced during all of software life cycle phases

  3. Change Impact Analysis of Crosscutting in Software Architectural Design

    NARCIS (Netherlands)

    van den Berg, Klaas

    2006-01-01

    Software architectures should be amenable to changes in user requirements and implementation technology. The analysis of the impact of these changes can be based on traceability of architectural design elements. Design elements have dependencies with other software artifacts but also evolve in time.

  4. Integrated analysis software for bulk power system stability

    Energy Technology Data Exchange (ETDEWEB)

    Tanaka, T; Nagao, T; Takahashi, K [Central Research Inst. of Electric Power Industry, Tokyo (Japan)

    1994-12-31

    This paper presents Central Research Inst.of Electric Power Industry - CRIEPI`s - own developed three softwares for bulk power network analysis and the user support system which arranges tremendous data necessary for these softwares with easy and high reliability. (author) 3 refs., 7 figs., 2 tabs.

  5. Continuous Software Quality analysis for the ATLAS experiment

    CERN Document Server

    Washbrook, Andrew; The ATLAS collaboration

    2017-01-01

    The regular application of software quality tools in large collaborative projects is required to reduce code defects to an acceptable level. If left unchecked the accumulation of defects invariably results in performance degradation at scale and problems with the long-term maintainability of the code. Although software quality tools are effective for identification there remains a non-trivial sociological challenge to resolve defects in a timely manner. This is a ongoing concern for the ATLAS software which has evolved over many years to meet the demands of Monte Carlo simulation, detector reconstruction and data analysis. At present over 3.8 million lines of C++ code (and close to 6 million total lines of code) are maintained by a community of hundreds of developers worldwide. It is therefore preferable to address code defects before they are introduced into a widely used software release. Recent wholesale changes to the ATLAS software infrastructure have provided an ideal opportunity to apply software quali...

  6. Software Users Manual (SUM): Extended Testability Analysis (ETA) Tool

    Science.gov (United States)

    Maul, William A.; Fulton, Christopher E.

    2011-01-01

    This software user manual describes the implementation and use the Extended Testability Analysis (ETA) Tool. The ETA Tool is a software program that augments the analysis and reporting capabilities of a commercial-off-the-shelf (COTS) testability analysis software package called the Testability Engineering And Maintenance System (TEAMS) Designer. An initial diagnostic assessment is performed by the TEAMS Designer software using a qualitative, directed-graph model of the system being analyzed. The ETA Tool utilizes system design information captured within the diagnostic model and testability analysis output from the TEAMS Designer software to create a series of six reports for various system engineering needs. The ETA Tool allows the user to perform additional studies on the testability analysis results by determining the detection sensitivity to the loss of certain sensors or tests. The ETA Tool was developed to support design and development of the NASA Ares I Crew Launch Vehicle. The diagnostic analysis provided by the ETA Tool was proven to be valuable system engineering output that provided consistency in the verification of system engineering requirements. This software user manual provides a description of each output report generated by the ETA Tool. The manual also describes the example diagnostic model and supporting documentation - also provided with the ETA Tool software release package - that were used to generate the reports presented in the manual

  7. An Analysis of Security and Privacy Issues in Smart Grid Software Architectures on Clouds

    Energy Technology Data Exchange (ETDEWEB)

    Simmhan, Yogesh; Kumbhare, Alok; Cao, Baohua; Prasanna, Viktor K.

    2011-07-09

    Power utilities globally are increasingly upgrading to Smart Grids that use bi-directional communication with the consumer to enable an information-driven approach to distributed energy management. Clouds offer features well suited for Smart Grid software platforms and applications, such as elastic resources and shared services. However, the security and privacy concerns inherent in an information rich Smart Grid environment are further exacerbated by their deployment on Clouds. Here, we present an analysis of security and privacy issues in a Smart Grids software architecture operating on different Cloud environments, in the form of a taxonomy. We use the Los Angeles Smart Grid Project that is underway in the largest U.S. municipal utility to drive this analysis that will benefit both Cloud practitioners targeting Smart Grid applications, and Cloud researchers investigating security and privacy.

  8. Modular Open-Source Software for Item Factor Analysis

    Science.gov (United States)

    Pritikin, Joshua N.; Hunter, Micheal D.; Boker, Steven M.

    2015-01-01

    This article introduces an item factor analysis (IFA) module for "OpenMx," a free, open-source, and modular statistical modeling package that runs within the R programming environment on GNU/Linux, Mac OS X, and Microsoft Windows. The IFA module offers a novel model specification language that is well suited to programmatic generation…

  9. Comprehensive understandings of energy confinement in LHD plasmas through extensive application of the integrated transport analysis suite

    International Nuclear Information System (INIS)

    Yokoyama, M.; Seki, R.; Suzuki, C.; Ida, K.; Osakabe, M.; Satake, S.; Yamada, H.; Murakami, S.

    2014-10-01

    The integrated transport analysis suite, TASK3D-a, has enhanced energy transport analyses in LHD. It has clearly elucidated (1) the systematic dependence of ion and electron energy confinement on wide variation of plasma parameters, and (2) statistically-derived fitting expressions for the ion and electron heat diffusivities (χ i and χ e ), separately, taking also those radial-profile information into account. In particular, the latter approach can outstrip the conventional scaling laws for the global confinement time (τ E ) in terms of its considerations on profiles (temperature, density, heating depositions etc.). This has been made possible with the analysis database accumulated by the extensive application of the integrated transport analysis suite to experiment data. In this proceeding, TASK3D-a analysis-database for high-ion-temperature (high-T i ) plasmas in LHD (Large Helical Device) are exemplified. This approach should be applicable to any other combinations of integrated transport analysis suites and fusion experiments. (author)

  10. Free software for performing physical analysis of systems for digital radiography and mammography

    Energy Technology Data Exchange (ETDEWEB)

    Donini, Bruno; Lanconelli, Nico, E-mail: nico.lanconelli@unibo.it [Alma Mater Studiorum, Department of Physics and Astronomy, University of Bologna, Bologna 40127 (Italy); Rivetti, Stefano [Fisica Medica, Ospedale di Sassuolo S.p.A., Sassuolo 41049 (Italy); Bertolini, Marco [Medical Physics Unit, Azienda Ospedaliera ASMN, Istituto di Ricovero e Cura a Carattere Scientifico, Reggio Emilia 42123 (Italy)

    2014-05-15

    Purpose: In this paper, the authors present a free software for assisting users in achieving the physical characterization of x-ray digital systems and image quality checks. Methods: The program was developed as a plugin of a well-known public-domain suite ImageJ. The software can assist users in calculating various physical parameters such as the response curve (also termed signal transfer property), modulation transfer function (MTF), noise power spectra (NPS), and detective quantum efficiency (DQE). It also includes the computation of some image quality checks: defective pixel analysis, uniformity, dark analysis, and lag. Results: The software was made available in 2009 and has been used during the last couple of years by many users who gave us valuable feedback for improving its usability. It was tested for achieving the physical characterization of several clinical systems for digital radiography and mammography. Various published papers made use of the outcomes of the plugin. Conclusions: This software is potentially beneficial to a variety of users: physicists working in hospitals, staff working in radiological departments, such as medical physicists, physicians, engineers. The plugin, together with a brief user manual, are freely available and can be found online ( http://www.medphys.it/downloads.htm ). With our plugin users can estimate all three most important parameters used for physical characterization (MTF, NPS, and also DQE). The plugin can run on any operating system equipped with ImageJ suite. The authors validated the software by comparing MTF and NPS curves on a common set of images with those obtained with other dedicated programs, achieving a very good agreement.

  11. Free software for performing physical analysis of systems for digital radiography and mammography.

    Science.gov (United States)

    Donini, Bruno; Rivetti, Stefano; Lanconelli, Nico; Bertolini, Marco

    2014-05-01

    In this paper, the authors present a free software for assisting users in achieving the physical characterization of x-ray digital systems and image quality checks. The program was developed as a plugin of a well-known public-domain suite ImageJ. The software can assist users in calculating various physical parameters such as the response curve (also termed signal transfer property), modulation transfer function (MTF), noise power spectra (NPS), and detective quantum efficiency (DQE). It also includes the computation of some image quality checks: defective pixel analysis, uniformity, dark analysis, and lag. The software was made available in 2009 and has been used during the last couple of years by many users who gave us valuable feedback for improving its usability. It was tested for achieving the physical characterization of several clinical systems for digital radiography and mammography. Various published papers made use of the outcomes of the plugin. This software is potentially beneficial to a variety of users: physicists working in hospitals, staff working in radiological departments, such as medical physicists, physicians, engineers. The plugin, together with a brief user manual, are freely available and can be found online (www.medphys.it/downloads.htm). With our plugin users can estimate all three most important parameters used for physical characterization (MTF, NPS, and also DQE). The plugin can run on any operating system equipped with ImageJ suite. The authors validated the software by comparing MTF and NPS curves on a common set of images with those obtained with other dedicated programs, achieving a very good agreement.

  12. Free software for performing physical analysis of systems for digital radiography and mammography

    International Nuclear Information System (INIS)

    Donini, Bruno; Lanconelli, Nico; Rivetti, Stefano; Bertolini, Marco

    2014-01-01

    Purpose: In this paper, the authors present a free software for assisting users in achieving the physical characterization of x-ray digital systems and image quality checks. Methods: The program was developed as a plugin of a well-known public-domain suite ImageJ. The software can assist users in calculating various physical parameters such as the response curve (also termed signal transfer property), modulation transfer function (MTF), noise power spectra (NPS), and detective quantum efficiency (DQE). It also includes the computation of some image quality checks: defective pixel analysis, uniformity, dark analysis, and lag. Results: The software was made available in 2009 and has been used during the last couple of years by many users who gave us valuable feedback for improving its usability. It was tested for achieving the physical characterization of several clinical systems for digital radiography and mammography. Various published papers made use of the outcomes of the plugin. Conclusions: This software is potentially beneficial to a variety of users: physicists working in hospitals, staff working in radiological departments, such as medical physicists, physicians, engineers. The plugin, together with a brief user manual, are freely available and can be found online ( http://www.medphys.it/downloads.htm ). With our plugin users can estimate all three most important parameters used for physical characterization (MTF, NPS, and also DQE). The plugin can run on any operating system equipped with ImageJ suite. The authors validated the software by comparing MTF and NPS curves on a common set of images with those obtained with other dedicated programs, achieving a very good agreement

  13. GWAMA: software for genome-wide association meta-analysis

    Directory of Open Access Journals (Sweden)

    Mägi Reedik

    2010-05-01

    Full Text Available Abstract Background Despite the recent success of genome-wide association studies in identifying novel loci contributing effects to complex human traits, such as type 2 diabetes and obesity, much of the genetic component of variation in these phenotypes remains unexplained. One way to improving power to detect further novel loci is through meta-analysis of studies from the same population, increasing the sample size over any individual study. Although statistical software analysis packages incorporate routines for meta-analysis, they are ill equipped to meet the challenges of the scale and complexity of data generated in genome-wide association studies. Results We have developed flexible, open-source software for the meta-analysis of genome-wide association studies. The software incorporates a variety of error trapping facilities, and provides a range of meta-analysis summary statistics. The software is distributed with scripts that allow simple formatting of files containing the results of each association study and generate graphical summaries of genome-wide meta-analysis results. Conclusions The GWAMA (Genome-Wide Association Meta-Analysis software has been developed to perform meta-analysis of summary statistics generated from genome-wide association studies of dichotomous phenotypes or quantitative traits. Software with source files, documentation and example data files are freely available online at http://www.well.ox.ac.uk/GWAMA.

  14. Long-term preservation of analysis software environment

    International Nuclear Information System (INIS)

    Toppe Larsen, Dag; Blomer, Jakob; Buncic, Predrag; Charalampidis, Ioannis; Haratyunyan, Artem

    2012-01-01

    Long-term preservation of scientific data represents a challenge to experiments, especially regarding the analysis software. Preserving data is not enough; the full software and hardware environment is needed. Virtual machines (VMs) make it possible to preserve hardware “in software”. A complete infrastructure package has been developed for easy deployment and management of VMs, based on CERN virtual machine (CernVM). Further, a HTTP-based file system, CernVM file system (CVMFS), is used for the distribution of the software. It is possible to process data with any given software version, and a matching, regenerated VM version. A point-and-click web user interface is being developed for setting up the complete processing chain, including VM and software versions, number and type of processing nodes, and the particular type of analysis and data. This paradigm also allows for distributed cloud-computing on private and public clouds, for both legacy and contemporary experiments.

  15. Overview of ACTYS project on development of indigenous state-of-the-art code suites for nuclear activation analysis

    International Nuclear Information System (INIS)

    Subhash, P.V.; Tadepalli, Sai Chaitanya; Deshpande, Shishir P.; Kanth, Priti; Srinivasan, R.

    2017-01-01

    Rigorous activation calculations are warranted for safer and efficient design of future fusion machines. Suitable activation codes, which yield accurate results with faster performance yet include all fusion relevant reactions are a prerequisite. To meet these, an indigenous project called ACTYS-Project is initiated and as a result, four state-of-art codes are developed so far. The goal of this project is to develop indigenous state-of-the-art code suites for nuclear activation analysis

  16. Development of design and analysis software for advanced nuclear system

    International Nuclear Information System (INIS)

    Wu Yican; Hu Liqin; Long Pengcheng; Luo Yuetong; Li Yazhou; Zeng Qin; Lu Lei; Zhang Junjun; Zou Jun; Xu Dezheng; Bai Yunqing; Zhou Tao; Chen Hongli; Peng Lei; Song Yong; Huang Qunying

    2010-01-01

    A series of professional codes, which are necessary software tools and data libraries for advanced nuclear system design and analysis, were developed by the FDS Team, including the codes of automatic modeling, physics and engineering calculation, virtual simulation and visualization, system engineering and safety analysis and the related database management etc. The development of these software series was proposed as an exercise of development of nuclear informatics. This paper introduced the main functions and key techniques of the software series, as well as some tests and practical applications. (authors)

  17. RAJA Performance Suite

    Energy Technology Data Exchange (ETDEWEB)

    2017-09-01

    The RAJA Performance Suite is designed to evaluate performance of the RAJA performance portability library on a wide variety of important high performance computing (HPC) algorithmic lulmels. These kernels assess compiler optimizations and various parallel programming model backends accessible through RAJA, such as OpenMP, CUDA, etc. The Initial version of the suite contains 25 computational kernels, each of which appears in 6 variants: Baseline SequcntiaJ, RAJA SequentiaJ, Baseline OpenMP, RAJA OpenMP, Baseline CUDA, RAJA CUDA. All variants of each kernel perform essentially the same mathematical operations and the loop body code for each kernel is identical across all variants. There are a few kernels, such as those that contain reduction operations, that require CUDA-specific coding for their CUDA variants. ActuaJ computer instructions executed and how they run in parallel differs depending on the parallel programming model backend used and which optimizations are perfonned by the compiler used to build the Perfonnance Suite executable. The Suite will be used primarily by RAJA developers to perform regular assessments of RAJA performance across a range of hardware platforms and compilers as RAJA features are being developed. It will also be used by LLNL hardware and software vendor panners for new defining requirements for future computing platform procurements and acceptance testing. In particular, the RAJA Performance Suite will be used for compiler acceptance testing of the upcoming CORAUSierra machine {initial LLNL delivery expected in late-2017/early 2018) and the CORAL-2 procurement. The Suite will aJso be used to generate concise source code reproducers of compiler and runtime issues we uncover so that we may provide them to relevant vendors to be fixed.

  18. Development of software tools for 4-D visualization and quantitative analysis of PHITS simulation results

    International Nuclear Information System (INIS)

    Furutaka, Kazuyoshi

    2015-02-01

    A suite of software tools has been developed to facilitate the development of apparatus using a radiation transport simulation code PHITS by enabling 4D visualization (3D space and time) and quantitative analysis of so-called dieaway plots. To deliver useable tools as soon as possible, the existing software was utilized as much as possible; ParaView will be used for the 4D visualization of the results, whereas the analyses of dieaway plots will be done with ROOT toolkit with a tool named “diana”. To enable 4D visualization using ParaView, a group of tools (angel2vtk, DispDCAS1, CamPos) has been developed for the conversion of the data format to the one which can be read from ParaView and to ease the visualization. (author)

  19. Change impact analysis for software product lines

    Directory of Open Access Journals (Sweden)

    Jihen Maâzoun

    2016-10-01

    Full Text Available A software product line (SPL represents a family of products in a given application domain. Each SPL is constructed to provide for the derivation of new products by covering a wide range of features in its domain. Nevertheless, over time, some domain features may become obsolete with the apparition of new features while others may become refined. Accordingly, the SPL must be maintained to account for the domain evolution. Such evolution requires a means for managing the impact of changes on the SPL models, including the feature model and design. This paper presents an automated method that analyzes feature model evolution, traces their impact on the SPL design, and offers a set of recommendations to ensure the consistency of both models. The proposed method defines a set of new metrics adapted to SPL evolution to identify the effort needed to maintain the SPL models consistently and with a quality as good as the original models. The method and its tool are illustrated through an example of an SPL in the Text Editing domain. In addition, they are experimentally evaluated in terms of both the quality of the maintained SPL models and the precision of the impact change management.

  20. Dispersion analysis of biotoxins using HPAC software

    International Nuclear Information System (INIS)

    Wu, A.; Nurthen, N.; Horstman, A.; Watson, R.; Phillips, M.

    2009-01-01

    Biotoxins are emerging threat agents produced by living organisms: bacteria, plants, or animals. Biotoxins are generally classified as cyanotoxins, hemotoxins, necrotoxins, neurotoxins, and cytotoxins. The application of classical biotoxins as weapons of terror has been realized because of extreme potency and lethality; ease of production, transport, and misuse; and the need for prolonged intensive care among affected persons. Recently, emerging biotoxins, such as ricin and T2 micotoxin have been clandestinely used by either terrorist groups or military combat operations. It is thus highly desirable to have a modeling system to simulate dispersions of biotoxins in a terrorist attack scenario in order to provide prompt technical support and casualty estimation to the first responders and military rescuers. The Hazard Prediction and Assessment Capability (HPAC) automated software system provides the means to accurately predict the effects of hazardous material released into the atmosphere and its impact on civilian and military populations. The system uses integrated source terms, high-resolution weather forecasts and atmospheric transport and dispersion analyses to model hazard areas produced by military or terrorist incidents and industrial accidents. We have successfully incorporated physical, chemical, epidemiological and biological characteristics of a variety of biotoxins into the HPAC system and have conducted numerous analyses for our emergency responders. The health effects caused by these hazards are closely reflected in HPAC output results.(author)

  1. OST: analysis tool for real time software by simulation of material and software environments

    International Nuclear Information System (INIS)

    Boulc'h; Le Meur; Lapassat; Salichon; Segalard

    1988-07-01

    The utilization of microprocessors systems in a nuclear installation control oblige a great operation safety in the installation operation and in the environment protection. For the safety analysis of these installations the Institute of Protection and Nuclear Safety (IPSN) will dispose tools which permit to make controls during all the life of the software. The simulation and test tool (OST) which have been created is completely made by softwares. It is used on VAX calculators and can be easily transportable on other calculators [fr

  2. Analytical Tools for Space Suit Design

    Science.gov (United States)

    Aitchison, Lindsay

    2011-01-01

    As indicated by the implementation of multiple small project teams within the agency, NASA is adopting a lean approach to hardware development that emphasizes quick product realization and rapid response to shifting program and agency goals. Over the past two decades, space suit design has been evolutionary in approach with emphasis on building prototypes then testing with the largest practical range of subjects possible. The results of these efforts show continuous improvement but make scaled design and performance predictions almost impossible with limited budgets and little time. Thus, in an effort to start changing the way NASA approaches space suit design and analysis, the Advanced Space Suit group has initiated the development of an integrated design and analysis tool. It is a multi-year-if not decadal-development effort that, when fully implemented, is envisioned to generate analysis of any given space suit architecture or, conversely, predictions of ideal space suit architectures given specific mission parameters. The master tool will exchange information to and from a set of five sub-tool groups in order to generate the desired output. The basic functions of each sub-tool group, the initial relationships between the sub-tools, and a comparison to state of the art software and tools are discussed.

  3. Power Analysis Software for Educational Researchers

    Science.gov (United States)

    Peng, Chao-Ying Joanne; Long, Haiying; Abaci, Serdar

    2012-01-01

    Given the importance of statistical power analysis in quantitative research and the repeated emphasis on it by American Educational Research Association/American Psychological Association journals, the authors examined the reporting practice of power analysis by the quantitative studies published in 12 education/psychology journals between 2005…

  4. JEM-X science analysis software

    DEFF Research Database (Denmark)

    Westergaard, Niels Jørgen Stenfeldt; Kretschmar, P.; Oxborrow, Carol Anne

    2003-01-01

    The science analysis of the data from JEM-X on INTEGRAL is performed through a number of levels including corrections, good time selection, imaging and source finding, spectrum and light-curve extraction. These levels consist of individual executables and the running of the complete analysis...

  5. Analysis of Variance: What Is Your Statistical Software Actually Doing?

    Science.gov (United States)

    Li, Jian; Lomax, Richard G.

    2011-01-01

    Users assume statistical software packages produce accurate results. In this article, the authors systematically examined Statistical Package for the Social Sciences (SPSS) and Statistical Analysis System (SAS) for 3 analysis of variance (ANOVA) designs, mixed-effects ANOVA, fixed-effects analysis of covariance (ANCOVA), and nested ANOVA. For each…

  6. A graphical user interface for RAId, a knowledge integrated proteomics analysis suite with accurate statistics

    OpenAIRE

    Joyce, Brendan; Lee, Danny; Rubio, Alex; Ogurtsov, Aleksey; Alves, Gelio; Yu, Yi-Kuo

    2018-01-01

    Abstract Objective RAId is a software package that has been actively developed for the past 10 years for computationally and visually analyzing MS/MS data. Founded on rigorous statistical methods, RAId’s core program computes accurate E-values for peptides and proteins identified during database searches. Making this robust tool readily accessible for the proteomics community by developing a graphical user interface (GUI) is our main goa...

  7. Adapted wavelet analysis from theory to software

    CERN Document Server

    Wickerhauser, Mladen Victor

    1994-01-01

    This detail-oriented text is intended for engineers and applied mathematicians who must write computer programs to perform wavelet and related analysis on real data. It contains an overview of mathematical prerequisites and proceeds to describe hands-on programming techniques to implement special programs for signal analysis and other applications. From the table of contents: - Mathematical Preliminaries - Programming Techniques - The Discrete Fourier Transform - Local Trigonometric Transforms - Quadrature Filters - The Discrete Wavelet Transform - Wavelet Packets - The Best Basis Algorithm - Multidimensional Library Trees - Time-Frequency Analysis - Some Applications - Solutions to Some of the Exercises - List of Symbols - Quadrature Filter Coefficients

  8. Development of Emittance Analysis Software for Ion Beam Characterization

    International Nuclear Information System (INIS)

    Padilla, M.J.; Liu, Yuan

    2007-01-01

    Transverse beam emittance is a crucial property of charged particle beams that describes their angular and spatial spread. It is a figure of merit frequently used to determine the quality of ion beams, the compatibility of an ion beam with a given beam transport system, and the ability to suppress neighboring isotopes at on-line mass separator facilities. Generally, a high-quality beam is characterized by a small emittance. In order to determine and improve the quality of ion beams used at the Holifield Radioactive Ion Beam Facility (HRIBF) for nuclear physics and nuclear astrophysics research, the emittances of the ion beams are measured at the off-line Ion Source Test Facilities. In this project, emittance analysis software was developed to perform various data processing tasks for noise reduction, to evaluate root-mean-square emittance, Twiss parameters, and area emittance of different beam fractions. The software also provides 2D and 3D graphical views of the emittance data, beam profiles, emittance contours, and RMS. Noise exclusion is essential for accurate determination of beam emittance values. A Self-Consistent, Unbiased Elliptical Exclusion (SCUBEEx) method is employed. Numerical data analysis techniques such as interpolation and nonlinear fitting are also incorporated into the software. The software will provide a simplified, fast tool for comprehensive emittance analysis. The main functions of the software package have been completed. In preliminary tests with experimental emittance data, the analysis results using the software were shown to be accurate

  9. DEVELOPMENT OF EMITTANCE ANALYSIS SOFTWARE FOR ION BEAM CHARACTERIZATION

    Energy Technology Data Exchange (ETDEWEB)

    Padilla, M. J.; Liu, Y.

    2007-01-01

    Transverse beam emittance is a crucial property of charged particle beams that describes their angular and spatial spread. It is a fi gure of merit frequently used to determine the quality of ion beams, the compatibility of an ion beam with a given beam transport system, and the ability to suppress neighboring isotopes at on-line mass separator facilities. Generally a high quality beam is characterized by a small emittance. In order to determine and improve the quality of ion beams used at the Holifi eld Radioactive Ion beam Facility (HRIBF) for nuclear physics and nuclear astrophysics research, the emittances of the ion beams are measured at the off-line Ion Source Test Facilities. In this project, emittance analysis software was developed to perform various data processing tasks for noise reduction, to evaluate root-mean-square emittance, Twiss parameters, and area emittance of different beam fractions. The software also provides 2D and 3D graphical views of the emittance data, beam profi les, emittance contours, and RMS. Noise exclusion is essential for accurate determination of beam emittance values. A Self-Consistent, Unbiased Elliptical Exclusion (SCUBEEx) method is employed. Numerical data analysis techniques such as interpolation and nonlinear fi tting are also incorporated into the software. The software will provide a simplifi ed, fast tool for comprehensive emittance analysis. The main functions of the software package have been completed. In preliminary tests with experimental emittance data, the analysis results using the software were shown to be accurate.

  10. Development of Cell Analysis Software for Cultivated Corneal Endothelial Cells.

    Science.gov (United States)

    Okumura, Naoki; Ishida, Naoya; Kakutani, Kazuya; Hongo, Akane; Hiwa, Satoru; Hiroyasu, Tomoyuki; Koizumi, Noriko

    2017-11-01

    To develop analysis software for cultured human corneal endothelial cells (HCECs). Software was designed to recognize cell borders and to provide parameters such as cell density, coefficient of variation, and polygonality of cultured HCECs based on phase contrast images. Cultured HCECs with high or low cell density were incubated with Ca-free and Mg-free phosphate-buffered saline for 10 minutes to reveal the cell borders and were then analyzed with software (n = 50). Phase contrast images showed that cell borders were not distinctly outlined, but these borders became more distinctly outlined after phosphate-buffered saline treatment and were recognized by cell analysis software. The cell density value provided by software was similar to that obtained using manual cell counting by an experienced researcher. Morphometric parameters, such as the coefficient of variation and polygonality, were also produced by software, and these values were significantly correlated with cell density (Pearson correlation coefficients -0.62 and 0.63, respectively). The software described here provides morphometric information from phase contrast images, and it enables subjective and noninvasive quality assessment for tissue engineering therapy of the corneal endothelium.

  11. A cost and time analysis of laryngology procedures in the endoscopy suite versus the operating room.

    Science.gov (United States)

    Hillel, Alexander T; Ochsner, Matthew C; Johns, Michael M; Klein, Adam M

    2016-06-01

    To assess the costs, charges, reimbursement, and efficiency of performing awake laryngology procedures in an endoscopy suite (ES) compared with like procedures performed in the operating room (OR). Retrospective review of billing records. Cost, charges, and reimbursements for the hospital, surgeon, and anesthesiologist were compared between ES injection laryngoplasty and laser excision procedures and matched case controls in the OR. Time spent in 1) the preoperative unit, 2) the operating or endoscopy suite, and 3) recovery unit were compared between OR and ES procedures. Hospital expenses were significantly less for ES procedures when compared to OR procedures. Reimbursement was similar for ES and OR injection laryngoplasty, though greater for OR laser excisions. Net balance (reimbursement-expenses) was greater for ES procedures. A predictive model of payer costs over a 3-year period showed similar costs for ES and OR laser procedures and reduced costs for ES compared to OR injection laryngoplasty. Times spent preoperatively and the procedure were significantly less for ES procedures. For individual laryngology procedures, the ES reduces time and costs compared to the OR, increasing otolaryngologist and hospital efficiency. This reveals cost and time savings of ES injection laryngoplasty, which occurs at a similar frequency as OR injection laryngoplasty. Given the increased frequency for ES laser procedures, total costs are similar for ES and OR laser excision of papilloma, which usually require repeated procedures. When regulated office space is unavailable, endoscopy rooms represent an alternative setting for unsedated laryngology procedures. NA Laryngoscope, 126:1385-1389, 2016. © 2015 The American Laryngological, Rhinological and Otological Society, Inc.

  12. Automated Freedom from Interference Analysis for Automotive Software

    OpenAIRE

    Leitner-Fischer , Florian; Leue , Stefan; Liu , Sirui

    2016-01-01

    International audience; Freedom from Interference for automotive software systems developed according to the ISO 26262 standard means that a fault in a less safety critical software component will not lead to a fault in a more safety critical component. It is an important concern in the realm of functional safety for automotive systems. We present an automated method for the analysis of concurrency-related interferences based on the QuantUM approach and tool that we have previously developed....

  13. Do You Need ERP? In the Business World, Enterprise Resource Planning Software Keeps Costs down and Productivity up. Should Districts Follow Suit?

    Science.gov (United States)

    Careless, James

    2007-01-01

    Enterprise resource planning (ERP) software does what school leaders have always wanted their computer systems to do: It sees all. By integrating every IT application an organization has--from purchasing and inventory control to payroll--ERPs create a single unified system. Not only does this give IT managers a holistic view to what is happening…

  14. Do You Need ERP? In the Business World, Enterprise Resource Planning Software Keeps Costs down and Productivity up. Should Districts Follow Suit?

    Science.gov (United States)

    Careless, James

    2007-01-01

    Enterprise resource planning software does what school leaders have always wanted their computer systems to do: It sees all. By integrating every IT application an organization has--from purchasing and inventory control to payroll--ERPs create a single unified system. Not only does this give IT managers a holistic view to what is happening in the…

  15. Software safety analysis techniques for developing safety critical software in the digital protection system of the LMR

    Energy Technology Data Exchange (ETDEWEB)

    Lee, Jang Soo; Cheon, Se Woo; Kim, Chang Hoi; Sim, Yun Sub

    2001-02-01

    This report has described the software safety analysis techniques and the engineering guidelines for developing safety critical software to identify the state of the art in this field and to give the software safety engineer a trail map between the code and standards layer and the design methodology and documents layer. We have surveyed the management aspects of software safety activities during the software lifecycle in order to improve the safety. After identifying the conventional safety analysis techniques for systems, we have surveyed in details the software safety analysis techniques, software FMEA(Failure Mode and Effects Analysis), software HAZOP(Hazard and Operability Analysis), and software FTA(Fault Tree Analysis). We have also surveyed the state of the art in the software reliability assessment techniques. The most important results from the reliability techniques are not the specific probability numbers generated, but the insights into the risk importance of software features. To defend against potential common-mode failures, high quality, defense-in-depth, and diversity are considered to be key elements in digital I and C system design. To minimize the possibility of CMFs and thus increase the plant reliability, we have provided D-in-D and D analysis guidelines.

  16. Software safety analysis techniques for developing safety critical software in the digital protection system of the LMR

    International Nuclear Information System (INIS)

    Lee, Jang Soo; Cheon, Se Woo; Kim, Chang Hoi; Sim, Yun Sub

    2001-02-01

    This report has described the software safety analysis techniques and the engineering guidelines for developing safety critical software to identify the state of the art in this field and to give the software safety engineer a trail map between the code and standards layer and the design methodology and documents layer. We have surveyed the management aspects of software safety activities during the software lifecycle in order to improve the safety. After identifying the conventional safety analysis techniques for systems, we have surveyed in details the software safety analysis techniques, software FMEA(Failure Mode and Effects Analysis), software HAZOP(Hazard and Operability Analysis), and software FTA(Fault Tree Analysis). We have also surveyed the state of the art in the software reliability assessment techniques. The most important results from the reliability techniques are not the specific probability numbers generated, but the insights into the risk importance of software features. To defend against potential common-mode failures, high quality, defense-in-depth, and diversity are considered to be key elements in digital I and C system design. To minimize the possibility of CMFs and thus increase the plant reliability, we have provided D-in-D and D analysis guidelines

  17. Development of output user interface software to support analysis

    Energy Technology Data Exchange (ETDEWEB)

    Wahanani, Nursinta Adi, E-mail: sintaadi@batan.go.id; Natsir, Khairina, E-mail: sintaadi@batan.go.id; Hartini, Entin, E-mail: sintaadi@batan.go.id [Center for Development of Nuclear Informatics - National Nuclear Energy Agency, PUSPIPTEK, Serpong, Tangerang, Banten (Indonesia)

    2014-09-30

    Data processing software packages such as VSOP and MCNPX are softwares that has been scientifically proven and complete. The result of VSOP and MCNPX are huge and complex text files. In the analyze process, user need additional processing like Microsoft Excel to show informative result. This research develop an user interface software for output of VSOP and MCNPX. VSOP program output is used to support neutronic analysis and MCNPX program output is used to support burn-up analysis. Software development using iterative development methods which allow for revision and addition of features according to user needs. Processing time with this software 500 times faster than with conventional methods using Microsoft Excel. PYTHON is used as a programming language, because Python is available for all major operating systems: Windows, Linux/Unix, OS/2, Mac, Amiga, among others. Values that support neutronic analysis are k-eff, burn-up and mass Pu{sup 239} and Pu{sup 241}. Burn-up analysis used the mass inventory values of actinide (Thorium, Plutonium, Neptunium and Uranium). Values are visualized in graphical shape to support analysis.

  18. Development of output user interface software to support analysis

    International Nuclear Information System (INIS)

    Wahanani, Nursinta Adi; Natsir, Khairina; Hartini, Entin

    2014-01-01

    Data processing software packages such as VSOP and MCNPX are softwares that has been scientifically proven and complete. The result of VSOP and MCNPX are huge and complex text files. In the analyze process, user need additional processing like Microsoft Excel to show informative result. This research develop an user interface software for output of VSOP and MCNPX. VSOP program output is used to support neutronic analysis and MCNPX program output is used to support burn-up analysis. Software development using iterative development methods which allow for revision and addition of features according to user needs. Processing time with this software 500 times faster than with conventional methods using Microsoft Excel. PYTHON is used as a programming language, because Python is available for all major operating systems: Windows, Linux/Unix, OS/2, Mac, Amiga, among others. Values that support neutronic analysis are k-eff, burn-up and mass Pu 239 and Pu 241 . Burn-up analysis used the mass inventory values of actinide (Thorium, Plutonium, Neptunium and Uranium). Values are visualized in graphical shape to support analysis

  19. LANDSAFE: LANDING SITE RISK ANALYSIS SOFTWARE FRAMEWORK

    OpenAIRE

    Schmidt, Ralph; Bostelmann, Jonas; Cornet, Yves; Heipke, Christian; Philippe, Christian; Poncelet, Nadia; de Rosa, Diego; Vandeloise, Yannick

    2012-01-01

    The European Space Agency (ESA) is planning a Lunar Lander mission in the 2018 timeframe that will demonstrate precise soft landing at the polar regions of the Moon. To ensure a safe and successful landing a careful risk analysis has to be carried out. This is comprised of identifying favorable target areas and evaluating the surface conditions in these areas. Features like craters, boulders, steep slopes, rough surfaces and shadow areas have to be identified in order to assess the risk assoc...

  20. Development of evaluation method for software safety analysis techniques

    International Nuclear Information System (INIS)

    Huang, H.; Tu, W.; Shih, C.; Chen, C.; Yang, W.; Yih, S.; Kuo, C.; Chen, M.

    2006-01-01

    Full text: Full text: Following the massive adoption of digital Instrumentation and Control (I and C) system for nuclear power plant (NPP), various Software Safety Analysis (SSA) techniques are used to evaluate the NPP safety for adopting appropriate digital I and C system, and then to reduce risk to acceptable level. However, each technique has its specific advantage and disadvantage. If the two or more techniques can be complementarily incorporated, the SSA combination would be more acceptable. As a result, if proper evaluation criteria are available, the analyst can then choose appropriate technique combination to perform analysis on the basis of resources. This research evaluated the applicable software safety analysis techniques nowadays, such as, Preliminary Hazard Analysis (PHA), Failure Modes and Effects Analysis (FMEA), Fault Tree Analysis (FTA), Markov chain modeling, Dynamic Flowgraph Methodology (DFM), and simulation-based model analysis; and then determined indexes in view of their characteristics, which include dynamic capability, completeness, achievability, detail, signal/ noise ratio, complexity, and implementation cost. These indexes may help the decision makers and the software safety analysts to choose the best SSA combination arrange their own software safety plan. By this proposed method, the analysts can evaluate various SSA combinations for specific purpose. According to the case study results, the traditional PHA + FMEA + FTA (with failure rate) + Markov chain modeling (without transfer rate) combination is not competitive due to the dilemma for obtaining acceptable software failure rates. However, the systematic architecture of FTA and Markov chain modeling is still valuable for realizing the software fault structure. The system centric techniques, such as DFM and Simulation-based model analysis, show the advantage on dynamic capability, achievability, detail, signal/noise ratio. However, their disadvantage are the completeness complexity

  1. How to do Meta-Analysis using HLM software

    OpenAIRE

    Petscher, Yaacov

    2013-01-01

    This is a step-by-step presentation of how to run a meta-analysis using HLM software. Because it's a variance known model, it is not run through the GUI, but batch mode. These slides show how to prepare the data and run the analysis.

  2. A relational approach to support software architecture analysis

    NARCIS (Netherlands)

    Feijs, L.M.G.; Krikhaar, R.L.; van Ommering, R.C.

    1998-01-01

    This paper reports on our experience with a relational approach to support the analysis of existing software architectures. The analysis options provide for visualization and view calculation. The approach has been applied for reverse engineering. It is also possible to check concrete designs

  3. Development of data acquisition and analysis software for multichannel detectors

    International Nuclear Information System (INIS)

    Chung, Y.

    1988-06-01

    This report describes the development of data acquisition and analysis software for Apple Macintosh computers, capable of controlling two multichannel detectors. With the help of outstanding graphics capabilities, easy-to-use user interface, and several other built-in convenience features, this application has enhanced the productivity and the efficiency of data analysis. 2 refs., 6 figs

  4. Radio-science performance analysis software

    Science.gov (United States)

    Morabito, D. D.; Asmar, S. W.

    1995-02-01

    The Radio Science Systems Group (RSSG) provides various support functions for several flight project radio-science teams. Among these support functions are uplink and sequence planning, real-time operations monitoring and support, data validation, archiving and distribution functions, and data processing and analysis. This article describes the support functions that encompass radio-science data performance analysis. The primary tool used by the RSSG to fulfill this support function is the STBLTY program set. STBLTY is used to reconstruct observable frequencies and calculate model frequencies, frequency residuals, frequency stability in terms of Allan deviation, reconstructed phase, frequency and phase power spectral density, and frequency drift rates. In the case of one-way data, using an ultrastable oscillator (USO) as a frequency reference, the program set computes the spacecraft transmitted frequency and maintains a database containing the in-flight history of the USO measurements. The program set also produces graphical displays. Some examples and discussions on operating the program set on Galileo and Ulysses data will be presented.

  5. Confirmatory Factor Analysis Alternative: Free, Accessible CBID Software.

    Science.gov (United States)

    Bott, Marjorie; Karanevich, Alex G; Garrard, Lili; Price, Larry R; Mudaranthakam, Dinesh Pal; Gajewski, Byron

    2018-02-01

    New software that performs Classical and Bayesian Instrument Development (CBID) is reported that seamlessly integrates expert (content validity) and participant data (construct validity) to produce entire reliability estimates with smaller sample requirements. The free CBID software can be accessed through a website and used by clinical investigators in new instrument development. Demonstrations are presented of the three approaches using the CBID software: (a) traditional confirmatory factor analysis (CFA), (b) Bayesian CFA using flat uninformative prior, and (c) Bayesian CFA using content expert data (informative prior). Outcomes of usability testing demonstrate the need to make the user-friendly, free CBID software available to interdisciplinary researchers. CBID has the potential to be a new and expeditious method for instrument development, adding to our current measurement toolbox. This allows for the development of new instruments for measuring determinants of health in smaller diverse populations or populations of rare diseases.

  6. IFDOTMETER: A New Software Application for Automated Immunofluorescence Analysis.

    Science.gov (United States)

    Rodríguez-Arribas, Mario; Pizarro-Estrella, Elisa; Gómez-Sánchez, Rubén; Yakhine-Diop, S M S; Gragera-Hidalgo, Antonio; Cristo, Alejandro; Bravo-San Pedro, Jose M; González-Polo, Rosa A; Fuentes, José M

    2016-04-01

    Most laboratories interested in autophagy use different imaging software for managing and analyzing heterogeneous parameters in immunofluorescence experiments (e.g., LC3-puncta quantification and determination of the number and size of lysosomes). One solution would be software that works on a user's laptop or workstation that can access all image settings and provide quick and easy-to-use analysis of data. Thus, we have designed and implemented an application called IFDOTMETER, which can run on all major operating systems because it has been programmed using JAVA (Sun Microsystems). Briefly, IFDOTMETER software has been created to quantify a variety of biological hallmarks, including mitochondrial morphology and nuclear condensation. The program interface is intuitive and user-friendly, making it useful for users not familiar with computer handling. By setting previously defined parameters, the software can automatically analyze a large number of images without the supervision of the researcher. Once analysis is complete, the results are stored in a spreadsheet. Using software for high-throughput cell image analysis offers researchers the possibility of performing comprehensive and precise analysis of a high number of images in an automated manner, making this routine task easier. © 2015 Society for Laboratory Automation and Screening.

  7. FORECAST: Regulatory effects cost analysis software annual

    International Nuclear Information System (INIS)

    Lopez, B.; Sciacca, F.W.

    1991-11-01

    Over the past several years the NRC has developed a generic cost methodology for the quantification of cost/economic impacts associated with a wide range of new or revised regulatory requirements. This methodology has been developed to aid the NRC in preparing Regulatory Impact Analyses (RIAs). These generic costing methods can be useful in quantifying impacts both to industry and to the NRC. The FORECAST program was developed to facilitate the use of the generic costing methodology. This PC program integrates the major cost considerations that may be required because of a regulatory change. FORECAST automates much of the calculations typically needed in an RIA and thus reduces the time and labor required to perform these analysis. More importantly, its integrated and consistent treatment of the different cost elements should help assure comprehensiveness, uniformity, and accuracy in the preparation of needed cost estimates

  8. Equipment Obsolescence Analysis and Management Software

    Energy Technology Data Exchange (ETDEWEB)

    Redmond, J.; Carret, L.; Shaon, S.; Schultz, C.

    2015-07-01

    The procurement engineering resources at Nuclear Power Plants (NPPs) are experiencing increasing backlog for procurement items primarily due to the inability to order the original replacement parts. The level of effort and time required to prepare procurement packages is increasing since the number of obsolete parts are increasing exponentially. Procurement packages for obsolete components and parts are much more complex and take more time to prepare because of the need to perform equivalency evaluations, testing requirements and test acceptance criteria development, commercial grade dedication or equipment qualification, and increasing efforts to verify that no fraudulent or counterfeit parts are procured. This problem will be further compounded when NPPs pursue license renewal and approval for plant-life extension. Advanced planning and advanced knowledge of equipment obsolescence is required to allow for sufficient time to properly procure replacement parts for obsolete items. The uncertain supply chain capability due to obsolescence is a real problem and can cause a risk to reliable plant operations due to the potential for a lack of available spare parts and replacement components to support outages and unplanned component failures. Advanced notification of obsolescence is increasingly more important to ensure that adequate time and planning is scheduled to procure the proper replacement parts. A thorough analysis of Original Equipment Manufacturer (OEM) availability and inventory as well as an analysis of failure rates and usage rates is required to predict critical part needs to allow for early identification of obsolescence issues so that a planned and controlled strategy to qualify replacement equipment can be implemented. (Author)

  9. Buying in to bioinformatics: an introduction to commercial sequence analysis software.

    Science.gov (United States)

    Smith, David Roy

    2015-07-01

    Advancements in high-throughput nucleotide sequencing techniques have brought with them state-of-the-art bioinformatics programs and software packages. Given the importance of molecular sequence data in contemporary life science research, these software suites are becoming an essential component of many labs and classrooms, and as such are frequently designed for non-computer specialists and marketed as one-stop bioinformatics toolkits. Although beautifully designed and powerful, user-friendly bioinformatics packages can be expensive and, as more arrive on the market each year, it can be difficult for researchers, teachers and students to choose the right software for their needs, especially if they do not have a bioinformatics background. This review highlights some of the currently available and most popular commercial bioinformatics packages, discussing their prices, usability, features and suitability for teaching. Although several commercial bioinformatics programs are arguably overpriced and overhyped, many are well designed, sophisticated and, in my opinion, worth the investment. If you are just beginning your foray into molecular sequence analysis or an experienced genomicist, I encourage you to explore proprietary software bundles. They have the potential to streamline your research, increase your productivity, energize your classroom and, if anything, add a bit of zest to the often dry detached world of bioinformatics. © The Author 2014. Published by Oxford University Press.

  10. The software analysis project for the Office of Human Resources

    Science.gov (United States)

    Tureman, Robert L., Jr.

    1994-01-01

    There were two major sections of the project for the Office of Human Resources (OHR). The first section was to conduct a planning study to analyze software use with the goal of recommending software purchases and determining whether the need exists for a file server. The second section was analysis and distribution planning for retirement planning computer program entitled VISION provided by NASA Headquarters. The software planning study was developed to help OHR analyze the current administrative desktop computing environment and make decisions regarding software acquisition and implementation. There were three major areas addressed by the study: current environment new software requirements, and strategies regarding the implementation of a server in the Office. To gather data on current environment, employees were surveyed and an inventory of computers were produced. The surveys were compiled and analyzed by the ASEE fellow with interpretation help by OHR staff. New software requirements represented a compilation and analysis of the surveyed requests of OHR personnel. Finally, the information on the use of a server represents research done by the ASEE fellow and analysis of survey data to determine software requirements for a server. This included selection of a methodology to estimate the number of copies of each software program required given current use and estimated growth. The report presents the results of the computing survey, a description of the current computing environment, recommenations for changes in the computing environment, current software needs, management advantages of using a server, and management considerations in the implementation of a server. In addition, detailed specifications were presented for the hardware and software recommendations to offer a complete picture to OHR management. The retirement planning computer program available to NASA employees will aid in long-range retirement planning. The intended audience is the NASA civil

  11. Suomi National Polar-Orbiting Partnership Visible Infrared Imaging Radiometer Suite Polarization Sensitivity Analysis

    Science.gov (United States)

    Sun, Junqiang; Xiong, Xiaoxiong; Waluschka, Eugene; Wang, Menghua

    2016-01-01

    The Visible Infrared Imaging Radiometer Suite (VIIRS) is one of five instruments onboard the Suomi National Polar-Orbiting Partnership (SNPP) satellite that launched from Vandenberg Air Force Base, California, on October 28, 2011. It is a whiskbroom radiometer that provides +/-56.28deg scans of the Earth view. It has 22 bands, among which 14 are reflective solar bands (RSBs). The RSBs cover a wavelength range from 410 to 2250 nm. The RSBs of a remote sensor are usually sensitive to the polarization of incident light. For VIIRS, it is specified that the polarization factor should be smaller than 3% for 410 and 862 nm bands and 2.5% for other RSBs for the scan angle within +/-45deg. Several polarization sensitivity tests were performed prelaunch for SNPP VIIRS. The first few tests either had large uncertainty or were less reliable, while the last one was believed to provide the more accurate information about the polarization property of the instrument. In this paper, the measured data in the last polarization sensitivity test are analyzed, and the polarization factors and phase angles are derived from the measurements for all the RSBs. The derived polarization factors and phase angles are band, detector, and scan angle dependent. For near-infrared bands, they also depend on the half-angle mirror side. Nevertheless, the derived polarization factors are all within the specification, although the strong detector dependence of the polarization parameters was not expected. Compared to the Moderate Resolution Imaging Spectroradiometer on both Aqua and Terra satellites, the polarization effect on VIIRS RSB is much smaller.

  12. Development of interactive software for fuel management analysis

    International Nuclear Information System (INIS)

    Graves, H.W. Jr.

    1986-01-01

    Electronic computation plays a central part in engineering analysis of all types. Utilization of microcomputers for calculations that were formerly carried out on large mainframe computers presents a unique opportunity to develop software that not only takes advantage of the lower cost of using these machines, but also increases the efficiency of the engineers performing these calculations. This paper reviews the use of electronic computers in engineering analysis, discusses the potential for microcomputer utilization in this area, and describes a series of steps to be followed in software development that can yield significant gains in engineering design efficiency

  13. A software package for biomedical image processing and analysis

    International Nuclear Information System (INIS)

    Goncalves, J.G.M.; Mealha, O.

    1988-01-01

    The decreasing cost of computing power and the introduction of low cost imaging boards justifies the increasing number of applications of digital image processing techniques in the area of biomedicine. There is however a large software gap to be fulfilled, between the application and the equipment. The requirements to bridge this gap are twofold: good knowledge of the hardware provided and its interface to the host computer, and expertise in digital image processing and analysis techniques. A software package incorporating these two requirements was developed using the C programming language, in order to create a user friendly image processing programming environment. The software package can be considered in two different ways: as a data structure adapted to image processing and analysis, which acts as the backbone and the standard of communication for all the software; and as a set of routines implementing the basic algorithms used in image processing and analysis. Hardware dependency is restricted to a single module upon which all hardware calls are based. The data structure that was built has four main features: hierchical, open, object oriented, and object dependent dimensions. Considering the vast amount of memory needed by imaging applications and the memory available in small imaging systems, an effective image memory management scheme was implemented. This software package is being used for more than one and a half years by users with different applications. It proved to be an excellent tool for helping people to get adapted into the system, and for standardizing and exchanging software, yet preserving flexibility allowing for users' specific implementations. The philosophy of the software package is discussed and the data structure that was built is described in detail

  14. Applications of the BEam Cross section Analysis Software (BECAS)

    DEFF Research Database (Denmark)

    Blasques, José Pedro Albergaria Amaral; Bitsche, Robert; Fedorov, Vladimir

    2013-01-01

    A newly developed framework is presented for structural design and analysis of long slender beam-like structures, e.g., wind turbine blades. The framework is based on the BEam Cross section Analysis Software – BECAS – a finite element based cross section analysis tool. BECAS is used for the gener......A newly developed framework is presented for structural design and analysis of long slender beam-like structures, e.g., wind turbine blades. The framework is based on the BEam Cross section Analysis Software – BECAS – a finite element based cross section analysis tool. BECAS is used...... for the generation of beam finite element models which correctly account for effects stemming from material anisotropy and inhomogeneity in cross sections of arbitrary geometry. These type of modelling approach allows for an accurate yet computationally inexpensive representation of a general class of three...

  15. Constitution of an incident database suited to statistical analysis and examples

    International Nuclear Information System (INIS)

    Verpeaux, J.L.

    1990-01-01

    The Nuclear Protection and Safety Institute (IPSN) has set up and is developing an incidents database, which is used for the management and analysis of incidents encountered in French PWR plants. IPSN has already carried out several incidents or safety important events statistical analysis, and is improving its database on the basis of the experience it gained from this various studies. A description of the analysis method and of the developed database is presented

  16. Development of Software for Measurement and Analysis of Solar Radiation

    International Nuclear Information System (INIS)

    Mohamad Idris Taib; Abul Adli Anuar; Noor Ezati Shuib

    2015-01-01

    This software was under development using LabVIEW to be using with StellarNet spectrometers system with USB communication to computer. LabVIEW have capabilities in hardware interfacing, graphical user interfacing and mathematical calculation including array manipulation and processing. This software read data from StellarNet spectrometer in real-time and then processed for analysis. Several measurement of solar radiation and analysis have been done. Solar radiation involved mainly infra-red, visible light and ultra-violet. With solar radiation spectrum data, information of weather and suitability of plant can be gathered and analyzed. Furthermore, optimization of utilization and safety precaution of solar radiation can be planned. Using this software, more research and development in utilization and safety of solar radiation can be explored. (author)

  17. A suite of Mathematica notebooks for the analysis of protein main chain 15N NMR relaxation data

    International Nuclear Information System (INIS)

    Spyracopoulos, Leo

    2006-01-01

    A suite of Mathematica notebooks has been designed to ease the analysis of protein main chain 15 N NMR relaxation data collected at a single magnetic field strength. Individual notebooks were developed to perform the following tasks: nonlinear fitting of 15 N-T 1 and -T 2 relaxation decays to a two parameter exponential decay, calculation of the principal components of the inertia tensor from protein structural coordinates, nonlinear optimization of the principal components and orientation of the axially symmetric rotational diffusion tensor, model-free analysis of 15 N-T 1 , -T 2 , and { 1 H}- 15 N NOE data, and reduced spectral density analysis of the relaxation data. The principle features of the notebooks include use of a minimal number of input files, integrated notebook data management, ease of use, cross-platform compatibility, automatic visualization of results and generation of high-quality graphics, and output of analyses in text format

  18. Tools-4-Metatool (T4M): online suite of web-tools to process stoichiometric network analysis data from Metatool.

    Science.gov (United States)

    Xavier, Daniela; Vázquez, Sara; Higuera, Clara; Morán, Federico; Montero, Francisco

    2011-08-01

    Tools-4-Metatool (T4M) is a suite of web-tools, implemented in PERL, which analyses, parses, and manipulates files related to Metatool. Its main goal is to assist the work with Metatool. T4M has two major sets of tools: Analysis and Compare. Analysis visualizes the results of Metatool (convex basis, elementary flux modes, and enzyme subsets) and facilitates the study of metabolic networks. It is composed of five tools: MDigraph, MetaMatrix, CBGraph, EMGraph, and SortEM. Compare was developed to compare different Metatool results from different networks. This set consists of: Compara and ComparaSub which compare network subsets providing outputs in different formats and ComparaEM that seeks for identical elementary modes in two metabolic networks. The suite T4M also includes one script that generates Metatool input: CBasis2Metatool, based on a Metatool output file that is filtered by a list of convex basis' metabolites. Finally, the utility CheckMIn checks the consistency of the Metatool input file. T4M is available at http://solea.quim.ucm.es/t4m. Copyright © 2011 Elsevier Ireland Ltd. All rights reserved.

  19. Evaluation of peak-fitting software for gamma spectrum analysis

    International Nuclear Information System (INIS)

    Zahn, Guilherme S.; Genezini, Frederico A.; Moralles, Mauricio

    2009-01-01

    In all applications of gamma-ray spectroscopy, one of the most important and delicate parts of the data analysis is the fitting of the gamma-ray spectra, where information as the number of counts, the position of the centroid and the width, for instance, are associated with each peak of each spectrum. There's a huge choice of computer programs that perform this type of analysis, and the most commonly used in routine work are the ones that automatically locate and fit the peaks; this fit can be made in several different ways - the most common ways are to fit a Gaussian function to each peak or simply to integrate the area under the peak, but some software go far beyond and include several small corrections to the simple Gaussian peak function, in order to compensate for secondary effects. In this work several gamma-ray spectroscopy software are compared in the task of finding and fitting the gamma-ray peaks in spectra taken with standard sources of 137 Cs, 60 Co, 133 Ba and 152 Eu. The results show that all of the automatic software can be properly used in the task of finding and fitting peaks, with the exception of GammaVision; also, it was possible to verify that the automatic peak-fitting software did perform as well as - and sometimes even better than - a manual peak-fitting software. (author)

  20. An Overview of the XGAM Code and Related Software for Gamma-ray Analysis

    Energy Technology Data Exchange (ETDEWEB)

    Younes, W. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)

    2014-11-13

    The XGAM spectrum-fitting code and associated software were developed specifically to analyze the complex gamma-ray spectra that can result from neutron-induced reactions. The XGAM code is designed to fit a spectrum over the entire available gamma-ray energy range as a single entity, in contrast to the more traditional piecewise approaches. This global-fit philosophy enforces background continuity as well as consistency between local and global behavior throughout the spectrum, and in a natural way. This report presents XGAM and the suite of programs built around it with an emphasis on how they fit into an overall analysis methodology for complex gamma-ray data. An application to the analysis of time-dependent delayed gamma-ray yields from 235U fission is shown in order to showcase the codes and how they interact.

  1. UTOOLS: microcomputer software for spatial analysis and landscape visualization.

    Science.gov (United States)

    Alan A. Ager; Robert J. McGaughey

    1997-01-01

    UTOOLS is a collection of programs designed to integrate various spatial data in a way that allows versatile spatial analysis and visualization. The programs were designed for watershed-scale assessments in which a wide array of resource data must be integrated, analyzed, and interpreted. UTOOLS software combines raster, attribute, and vector data into "spatial...

  2. Using Business Analysis Software in a Business Intelligence Course

    Science.gov (United States)

    Elizondo, Juan; Parzinger, Monica J.; Welch, Orion J.

    2011-01-01

    This paper presents an example of a project used in an undergraduate business intelligence class which integrates concepts from statistics, marketing, and information systems disciplines. SAS Enterprise Miner software is used as the foundation for predictive analysis and data mining. The course culminates with a competition and the project is used…

  3. Application of software technology to automatic test data analysis

    Science.gov (United States)

    Stagner, J. R.

    1991-01-01

    The verification process for a major software subsystem was partially automated as part of a feasibility demonstration. The methods employed are generally useful and applicable to other types of subsystems. The effort resulted in substantial savings in test engineer analysis time and offers a method for inclusion of automatic verification as a part of regression testing.

  4. WinDAM C earthen embankment internal erosion analysis software

    Science.gov (United States)

    Two primary causes of dam failure are overtopping and internal erosion. For the purpose of evaluating dam safety for existing earthen embankment dams and proposed earthen embankment dams, Windows Dam Analysis Modules C (WinDAM C) software will simulate either internal erosion or erosion resulting f...

  5. ANALYSIS OF CONTEMPORARY SOFTWARE BEING USED FOR FORWARDING SERVICES

    Directory of Open Access Journals (Sweden)

    Naumov, V.

    2013-01-01

    Full Text Available The role of information technologies in the forwarding services has been specified. The typical structure of the logistic sites providing the search of requests of freight owners and carriers has been described. The analysis of the software for transportation companies was conducted. The perspective directions of improvement of forwarding services process have been revealed.

  6. The MSRC Ab Initio Methods Benchmark Suite: A measurement of hardware and software performance in the area of electronic structure methods

    Energy Technology Data Exchange (ETDEWEB)

    Feller, D.F.

    1993-07-01

    This collection of benchmark timings represents a snapshot of the hardware and software capabilities available for ab initio quantum chemical calculations at Pacific Northwest Laboratory`s Molecular Science Research Center in late 1992 and early 1993. The ``snapshot`` nature of these results should not be underestimated, because of the speed with which both hardware and software are changing. Even during the brief period of this study, we were presented with newer, faster versions of several of the codes. However, the deadline for completing this edition of the benchmarks precluded updating all the relevant entries in the tables. As will be discussed below, a similar situation occurred with the hardware. The timing data included in this report are subject to all the normal failures, omissions, and errors that accompany any human activity. In an attempt to mimic the manner in which calculations are typically performed, we have run the calculations with the maximum number of defaults provided by each program and a near minimum amount of memory. This approach may not produce the fastest performance that a particular code can deliver. It is not known to what extent improved timings could be obtained for each code by varying the run parameters. If sufficient interest exists, it might be possible to compile a second list of timing data corresponding to the fastest observed performance from each application, using an unrestricted set of input parameters. Improvements in I/O might have been possible by fine tuning the Unix kernel, but we resisted the temptation to make changes to the operating system. Due to the large number of possible variations in levels of operating system, compilers, speed of disks and memory, versions of applications, etc., readers of this report may not be able to exactly reproduce the times indicated. Copies of the output files from individual runs are available if questions arise about a particular set of timings.

  7. A Knowledge-based Environment for Software Process Performance Analysis

    Directory of Open Access Journals (Sweden)

    Natália Chaves Lessa Schots

    2015-08-01

    Full Text Available Background: Process performance analysis is a key step for implementing continuous improvement in software organizations. However, the knowledge to execute such analysis is not trivial and the person responsible to executing it must be provided with appropriate support. Aim: This paper presents a knowledge-based environment, named SPEAKER, proposed for supporting software organizations during the execution of process performance analysis. SPEAKER comprises a body of knowledge and a set of activities and tasks for software process performance analysis along with supporting tools to executing these activities and tasks. Method: We conducted an informal literature reviews and a systematic mapping study, which provided basic requirements for the proposed environment. We implemented the SPEAKER environment integrating supporting tools for the execution of activities and tasks of performance analysis and the knowledge necessary to execute them, in order to meet the variability presented by the characteristics of these activities. Results: In this paper, we describe each SPEAKER module and the individual evaluations of these modules, and also present an example of use comprising how the environment can guide the user through a specific performance analysis activity. Conclusion: Although we only conducted individual evaluations of SPEAKER’s modules, the example of use indicates the feasibility of the proposed environment. Therefore, the environment as a whole will be further evaluated to verify if it attains its goal of assisting in the execution of process performance analysis by non-specialist people.

  8. A suite of MATLAB-based computational tools for automated analysis of COPAS Biosort data

    Science.gov (United States)

    Morton, Elizabeth; Lamitina, Todd

    2010-01-01

    Complex Object Parametric Analyzer and Sorter (COPAS) devices are large-object, fluorescence-capable flow cytometers used for high-throughput analysis of live model organisms, including Drosophila melanogaster, Caenorhabditis elegans, and zebrafish. The COPAS is especially useful in C. elegans high-throughput genome-wide RNA interference (RNAi) screens that utilize fluorescent reporters. However, analysis of data from such screens is relatively labor-intensive and time-consuming. Currently, there are no computational tools available to facilitate high-throughput analysis of COPAS data. We used MATLAB to develop algorithms (COPAquant, COPAmulti, and COPAcompare) to analyze different types of COPAS data. COPAquant reads single-sample files, filters and extracts values and value ratios for each file, and then returns a summary of the data. COPAmulti reads 96-well autosampling files generated with the ReFLX adapter, performs sample filtering, graphs features across both wells and plates, performs some common statistical measures for hit identification, and outputs results in graphical formats. COPAcompare performs a correlation analysis between replicate 96-well plates. For many parameters, thresholds may be defined through a simple graphical user interface (GUI), allowing our algorithms to meet a variety of screening applications. In a screen for regulators of stress-inducible GFP expression, COPAquant dramatically accelerated data analysis and allowed us to rapidly move from raw data to hit identification. Because the COPAS file structure is standardized and our MATLAB code is freely available, our algorithms should be extremely useful for analysis of COPAS data from multiple platforms and organisms. The MATLAB code is freely available at our web site (www.med.upenn.edu/lamitinalab/downloads.shtml). PMID:20569218

  9. STING Millennium: a web-based suite of programs for comprehensive and simultaneous analysis of protein structure and sequence

    Science.gov (United States)

    Neshich, Goran; Togawa, Roberto C.; Mancini, Adauto L.; Kuser, Paula R.; Yamagishi, Michel E. B.; Pappas, Georgios; Torres, Wellington V.; Campos, Tharsis Fonseca e; Ferreira, Leonardo L.; Luna, Fabio M.; Oliveira, Adilton G.; Miura, Ronald T.; Inoue, Marcus K.; Horita, Luiz G.; de Souza, Dimas F.; Dominiquini, Fabiana; Álvaro, Alexandre; Lima, Cleber S.; Ogawa, Fabio O.; Gomes, Gabriel B.; Palandrani, Juliana F.; dos Santos, Gabriela F.; de Freitas, Esther M.; Mattiuz, Amanda R.; Costa, Ivan C.; de Almeida, Celso L.; Souza, Savio; Baudet, Christian; Higa, Roberto H.

    2003-01-01

    STING Millennium Suite (SMS) is a new web-based suite of programs and databases providing visualization and a complex analysis of molecular sequence and structure for the data deposited at the Protein Data Bank (PDB). SMS operates with a collection of both publicly available data (PDB, HSSP, Prosite) and its own data (contacts, interface contacts, surface accessibility). Biologists find SMS useful because it provides a variety of algorithms and validated data, wrapped-up in a user friendly web interface. Using SMS it is now possible to analyze sequence to structure relationships, the quality of the structure, nature and volume of atomic contacts of intra and inter chain type, relative conservation of amino acids at the specific sequence position based on multiple sequence alignment, indications of folding essential residue (FER) based on the relationship of the residue conservation to the intra-chain contacts and Cα–Cα and Cβ–Cβ distance geometry. Specific emphasis in SMS is given to interface forming residues (IFR)—amino acids that define the interactive portion of the protein surfaces. SMS may simultaneously display and analyze previously superimposed structures. PDB updates trigger SMS updates in a synchronized fashion. SMS is freely accessible for public data at http://www.cbi.cnptia.embrapa.br, http://mirrors.rcsb.org/SMS and http://trantor.bioc.columbia.edu/SMS. PMID:12824333

  10. Synchronized analysis of testbeam data with the Judith software

    CERN Document Server

    McGoldrick, Garrin; Gorišek, Andrej

    2014-01-01

    The Judith software performs pixel detector analysis tasks utilizing two different data streams such as those produced by the reference and tested devices typically found in a testbeam. This software addresses and fixes problems arising from the desynchronization of the two simultaneously triggered data streams by detecting missed triggers in either of the streams. The software can perform all tasks required to generate particle tracks using multiple detector planes: it can align the planes, cluster hits and generate tracks from these clusters. This information can then be used to measure the properties of a particle detector with very fine spatial resolution. It was tested at DESY in the Kartel telescope, a silicon tracking detector, with ATLAS Diamond Beam Monitor modules as a device under test.

  11. One-Click Data Analysis Software for Science Operations

    Science.gov (United States)

    Navarro, Vicente

    2015-12-01

    One of the important activities of ESA Science Operations Centre is to provide Data Analysis Software (DAS) to enable users and scientists to process data further to higher levels. During operations and post-operations, Data Analysis Software (DAS) is fully maintained and updated for new OS and library releases. Nonetheless, once a Mission goes into the "legacy" phase, there are very limited funds and long-term preservation becomes more and more difficult. Building on Virtual Machine (VM), Cloud computing and Software as a Service (SaaS) technologies, this project has aimed at providing long-term preservation of Data Analysis Software for the following missions: - PIA for ISO (1995) - SAS for XMM-Newton (1999) - Hipe for Herschel (2009) - EXIA for EXOSAT (1983) Following goals have guided the architecture: - Support for all operations, post-operations and archive/legacy phases. - Support for local (user's computer) and cloud environments (ESAC-Cloud, Amazon - AWS). - Support for expert users, requiring full capabilities. - Provision of a simple web-based interface. This talk describes the architecture, challenges, results and lessons learnt gathered in this project.

  12. Application of econometric and ecology analysis methods in physics software

    Science.gov (United States)

    Han, Min Cheol; Hoff, Gabriela; Kim, Chan Hyeong; Kim, Sung Hun; Grazia Pia, Maria; Ronchieri, Elisabetta; Saracco, Paolo

    2017-10-01

    Some data analysis methods typically used in econometric studies and in ecology have been evaluated and applied in physics software environments. They concern the evolution of observables through objective identification of change points and trends, and measurements of inequality, diversity and evenness across a data set. Within each analysis area, various statistical tests and measures have been examined. This conference paper summarizes a brief overview of some of these methods.

  13. Comparison of two three-dimensional cephalometric analysis computer software.

    Science.gov (United States)

    Sawchuk, Dena; Alhadlaq, Adel; Alkhadra, Thamer; Carlyle, Terry D; Kusnoto, Budi; El-Bialy, Tarek

    2014-10-01

    Three-dimensional cephalometric analyses are getting more attraction in orthodontics. The aim of this study was to compare two softwares to evaluate three-dimensional cephalometric analyses of orthodontic treatment outcomes. Twenty cone beam computed tomography images were obtained using i-CAT(®) imaging system from patient's records as part of their regular orthodontic records. The images were analyzed using InVivoDental5.0 (Anatomage Inc.) and 3DCeph™ (University of Illinois at Chicago, Chicago, IL, USA) software. Before and after orthodontic treatments data were analyzed using t-test. Reliability test using interclass correlation coefficient was stronger for InVivoDental5.0 (0.83-0.98) compared with 3DCeph™ (0.51-0.90). Paired t-test comparison of the two softwares shows no statistical significant difference in the measurements made in the two softwares. InVivoDental5.0 measurements are more reproducible and user friendly when compared to 3DCeph™. No statistical difference between the two softwares in linear or angular measurements. 3DCeph™ is more time-consuming in performing three-dimensional analysis compared with InVivoDental5.0.

  14. Decision Engines for Software Analysis Using Satisfiability Modulo Theories Solvers

    Science.gov (United States)

    Bjorner, Nikolaj

    2010-01-01

    The area of software analysis, testing and verification is now undergoing a revolution thanks to the use of automated and scalable support for logical methods. A well-recognized premise is that at the core of software analysis engines is invariably a component using logical formulas for describing states and transformations between system states. The process of using this information for discovering and checking program properties (including such important properties as safety and security) amounts to automatic theorem proving. In particular, theorem provers that directly support common software constructs offer a compelling basis. Such provers are commonly called satisfiability modulo theories (SMT) solvers. Z3 is a state-of-the-art SMT solver. It is developed at Microsoft Research. It can be used to check the satisfiability of logical formulas over one or more theories such as arithmetic, bit-vectors, lists, records and arrays. The talk describes some of the technology behind modern SMT solvers, including the solver Z3. Z3 is currently mainly targeted at solving problems that arise in software analysis and verification. It has been applied to various contexts, such as systems for dynamic symbolic simulation (Pex, SAGE, Vigilante), for program verification and extended static checking (Spec#/Boggie, VCC, HAVOC), for software model checking (Yogi, SLAM), model-based design (FORMULA), security protocol code (F7), program run-time analysis and invariant generation (VS3). We will describe how it integrates support for a variety of theories that arise naturally in the context of the applications. There are several new promising avenues and the talk will touch on some of these and the challenges related to SMT solvers. Proceedings

  15. OVAS: an open-source variant analysis suite with inheritance modelling.

    Science.gov (United States)

    Mozere, Monika; Tekman, Mehmet; Kari, Jameela; Bockenhauer, Detlef; Kleta, Robert; Stanescu, Horia

    2018-02-08

    The advent of modern high-throughput genetics continually broadens the gap between the rising volume of sequencing data, and the tools required to process them. The need to pinpoint a small subset of functionally important variants has now shifted towards identifying the critical differences between normal variants and disease-causing ones. The ever-increasing reliance on cloud-based services for sequence analysis and the non-transparent methods they utilize has prompted the need for more in-situ services that can provide a safer and more accessible environment to process patient data, especially in circumstances where continuous internet usage is limited. To address these issues, we herein propose our standalone Open-source Variant Analysis Sequencing (OVAS) pipeline; consisting of three key stages of processing that pertain to the separate modes of annotation, filtering, and interpretation. Core annotation performs variant-mapping to gene-isoforms at the exon/intron level, append functional data pertaining the type of variant mutation, and determine hetero/homozygosity. An extensive inheritance-modelling module in conjunction with 11 other filtering components can be used in sequence ranging from single quality control to multi-file penetrance model specifics such as X-linked recessive or mosaicism. Depending on the type of interpretation required, additional annotation is performed to identify organ specificity through gene expression and protein domains. In the course of this paper we analysed an autosomal recessive case study. OVAS made effective use of the filtering modules to recapitulate the results of the study by identifying the prescribed compound-heterozygous disease pattern from exome-capture sequence input samples. OVAS is an offline open-source modular-driven analysis environment designed to annotate and extract useful variants from Variant Call Format (VCF) files, and process them under an inheritance context through a top-down filtering schema of

  16. Knickpoint finder: A software tool that improves neotectonic analysis

    Science.gov (United States)

    Queiroz, G. L.; Salamuni, E.; Nascimento, E. R.

    2015-03-01

    This work presents a new software tool for morphometric analysis of drainage networks based on the methods of Hack (1973) and Etchebehere et al. (2004). This tool is applicable to studies of morphotectonics and neotectonics. The software used a digital elevation model (DEM) to identify the relief breakpoints along drainage profiles (knickpoints). The program was coded in Python for use on the ArcGIS platform and is called Knickpoint Finder. A study area was selected to test and evaluate the software's ability to analyze and identify neotectonic morphostructures based on the morphology of the terrain. For an assessment of its validity, we chose an area of the James River basin, which covers most of the Piedmont area of Virginia (USA), which is an area of constant intraplate seismicity and non-orogenic active tectonics and exhibits a relatively homogeneous geodesic surface currently being altered by the seismogenic features of the region. After using the tool in the chosen area, we found that the knickpoint locations are associated with the geologic structures, epicenters of recent earthquakes, and drainages with rectilinear anomalies. The regional analysis demanded the use of a spatial representation of the data after processing using Knickpoint Finder. The results were satisfactory in terms of the correlation of dense areas of knickpoints with active lineaments and the rapidity of the identification of deformed areas. Therefore, this software tool may be considered useful in neotectonic analyses of large areas and may be applied to any area where there is DEM coverage.

  17. Search for Chemical Biomarkers on Mars Using the Sample Analysis at Mars Instrument Suite on the Mars Science Laboratory

    Science.gov (United States)

    Glavin, D. P.; Conrad, P.; Dworkin, J. P.; Eigenbrode, J.; Mahaffy, P. R.

    2011-01-01

    One key goal for the future exploration of Mars is the search for chemical biomarkers including complex organic compounds important in life on Earth. The Sample Analysis at Mars (SAM) instrument suite on the Mars Science Laboratory (MSL) will provide the most sensitive measurements of the organic composition of rocks and regolith samples ever carried out in situ on Mars. SAM consists of a gas chromatograph (GC), quadrupole mass spectrometer (QMS), and tunable laser spectrometer to measure volatiles in the atmosphere and released from rock powders heated up to 1000 C. The measurement of organics in solid samples will be accomplished by three experiments: (1) pyrolysis QMS to identify alkane fragments and simple aromatic compounds; pyrolysis GCMS to separate and identify complex mixtures of larger hydrocarbons; and (3) chemical derivatization and GCMS extract less volatile compounds including amino and carboxylic acids that are not detectable by the other two experiments.

  18. Subsurface mapping of Rustenburg Layered Suite (RLS), Bushveld Complex, South Africa: Inferred structural features using borehole data and spatial analysis

    Science.gov (United States)

    Bamisaiye, O. A.; Eriksson, P. G.; Van Rooy, J. L.; Brynard, H. M.; Foya, S.; Billay, A. Y.; Nxumalo, V.

    2017-08-01

    Faults and other structural features within the mafic-ultramafic layers of the Bushveld Complex have been a major issue mainly for exploration and mine planning. This study employed a new approach in detecting faults with both regional and meter scale offsets, which was not possible with the usually applied structure contour mapping. Interpretations of faults from structural and isopach maps were previously based on geological experience, while meter-scale faults were virtually impossible to detect from such maps. Spatial analysis was performed using borehole data primarily. This resulted in the identification of previously known structures and other hitherto unsuspected structural features. Consequently, the location, trends, and geometry of faults and some regional features within the Rustenburg Layered Suite (RLS) that might not be easy to detect through field mapping are adequately described in this study.

  19. STARS software tool for analysis of reliability and safety

    International Nuclear Information System (INIS)

    Poucet, A.; Guagnini, E.

    1989-01-01

    This paper reports on the STARS (Software Tool for the Analysis of Reliability and Safety) project aims at developing an integrated set of Computer Aided Reliability Analysis tools for the various tasks involved in systems safety and reliability analysis including hazard identification, qualitative analysis, logic model construction and evaluation. The expert system technology offers the most promising perspective for developing a Computer Aided Reliability Analysis tool. Combined with graphics and analysis capabilities, it can provide a natural engineering oriented environment for computer assisted reliability and safety modelling and analysis. For hazard identification and fault tree construction, a frame/rule based expert system is used, in which the deductive (goal driven) reasoning and the heuristic, applied during manual fault tree construction, is modelled. Expert system can explain their reasoning so that the analyst can become aware of the why and the how results are being obtained. Hence, the learning aspect involved in manual reliability and safety analysis can be maintained and improved

  20. STAMPS: development and verification of swallowing kinematic analysis software.

    Science.gov (United States)

    Lee, Woo Hyung; Chun, Changmook; Seo, Han Gil; Lee, Seung Hak; Oh, Byung-Mo

    2017-10-17

    Swallowing impairment is a common complication in various geriatric and neurodegenerative diseases. Swallowing kinematic analysis is essential to quantitatively evaluate the swallowing motion of the oropharyngeal structures. This study aims to develop a novel swallowing kinematic analysis software, called spatio-temporal analyzer for motion and physiologic study (STAMPS), and verify its validity and reliability. STAMPS was developed in MATLAB, which is one of the most popular platforms for biomedical analysis. This software was constructed to acquire, process, and analyze the data of swallowing motion. The target of swallowing structures includes bony structures (hyoid bone, mandible, maxilla, and cervical vertebral bodies), cartilages (epiglottis and arytenoid), soft tissues (larynx and upper esophageal sphincter), and food bolus. Numerous functions are available for the spatiotemporal parameters of the swallowing structures. Testing for validity and reliability was performed in 10 dysphagia patients with diverse etiologies and using the instrumental swallowing model which was designed to mimic the motion of the hyoid bone and the epiglottis. The intra- and inter-rater reliability tests showed excellent agreement for displacement and moderate to excellent agreement for velocity. The Pearson correlation coefficients between the measured and instrumental reference values were nearly 1.00 (P software is expected to be useful for researchers who are interested in the swallowing motion analysis.

  1. ROCKETSHIP: a flexible and modular software tool for the planning, processing and analysis of dynamic MRI studies

    International Nuclear Information System (INIS)

    Barnes, Samuel R.; Ng, Thomas S. C.; Santa-Maria, Naomi; Montagne, Axel; Zlokovic, Berislav V.; Jacobs, Russell E.

    2015-01-01

    Dynamic contrast-enhanced magnetic resonance imaging (DCE-MRI) is a promising technique to characterize pathology and evaluate treatment response. However, analysis of DCE-MRI data is complex and benefits from concurrent analysis of multiple kinetic models and parameters. Few software tools are currently available that specifically focuses on DCE-MRI analysis with multiple kinetic models. Here, we developed ROCKETSHIP, an open-source, flexible and modular software for DCE-MRI analysis. ROCKETSHIP incorporates analyses with multiple kinetic models, including data-driven nested model analysis. ROCKETSHIP was implemented using the MATLAB programming language. Robustness of the software to provide reliable fits using multiple kinetic models is demonstrated using simulated data. Simulations also demonstrate the utility of the data-driven nested model analysis. Applicability of ROCKETSHIP for both preclinical and clinical studies is shown using DCE-MRI studies of the human brain and a murine tumor model. A DCE-MRI software suite was implemented and tested using simulations. Its applicability to both preclinical and clinical datasets is shown. ROCKETSHIP was designed to be easily accessible for the beginner, but flexible enough for changes or additions to be made by the advanced user as well. The availability of a flexible analysis tool will aid future studies using DCE-MRI. A public release of ROCKETSHIP is available at (https://github.com/petmri/ROCKETSHIP)

  2. Effectiveness of an Automatic Tracking Software in Underwater Motion Analysis

    Directory of Open Access Journals (Sweden)

    Fabrício A. Magalhaes

    2013-12-01

    Full Text Available Tracking of markers placed on anatomical landmarks is a common practice in sports science to perform the kinematic analysis that interests both athletes and coaches. Although different software programs have been developed to automatically track markers and/or features, none of them was specifically designed to analyze underwater motion. Hence, this study aimed to evaluate the effectiveness of a software developed for automatic tracking of underwater movements (DVP, based on the Kanade-Lucas-Tomasi feature tracker. Twenty-one video recordings of different aquatic exercises (n = 2940 markers’ positions were manually tracked to determine the markers’ center coordinates. Then, the videos were automatically tracked using DVP and a commercially available software (COM. Since tracking techniques may produce false targets, an operator was instructed to stop the automatic procedure and to correct the position of the cursor when the distance between the calculated marker’s coordinate and the reference one was higher than 4 pixels. The proportion of manual interventions required by the software was used as a measure of the degree of automation. Overall, manual interventions were 10.4% lower for DVP (7.4% than for COM (17.8%. Moreover, when examining the different exercise modes separately, the percentage of manual interventions was 5.6% to 29.3% lower for DVP than for COM. Similar results were observed when analyzing the type of marker rather than the type of exercise, with 9.9% less manual interventions for DVP than for COM. In conclusion, based on these results, the developed automatic tracking software presented can be used as a valid and useful tool for underwater motion analysis.

  3. Model Based Analysis and Test Generation for Flight Software

    Science.gov (United States)

    Pasareanu, Corina S.; Schumann, Johann M.; Mehlitz, Peter C.; Lowry, Mike R.; Karsai, Gabor; Nine, Harmon; Neema, Sandeep

    2009-01-01

    We describe a framework for model-based analysis and test case generation in the context of a heterogeneous model-based development paradigm that uses and combines Math- Works and UML 2.0 models and the associated code generation tools. This paradigm poses novel challenges to analysis and test case generation that, to the best of our knowledge, have not been addressed before. The framework is based on a common intermediate representation for different modeling formalisms and leverages and extends model checking and symbolic execution tools for model analysis and test case generation, respectively. We discuss the application of our framework to software models for a NASA flight mission.

  4. Hardware and software constructs for a vibration analysis network

    International Nuclear Information System (INIS)

    Cook, S.A.; Crowe, R.D.; Toffer, H.

    1985-01-01

    Vibration level monitoring and analysis has been initiated at N Reactor, the dual purpose reactor operated at Hanford, Washington by UNC Nuclear Industries (UNC) for the Department of Energy (DOE). The machinery to be monitored was located in several buildings scattered over the plant site, necessitating an approach using satellite stations to collect, monitor and temporarily store data. The satellite stations are, in turn, linked to a centralized processing computer for further analysis. The advantages of a networked data analysis system are discussed in this paper along with the hardware and software required to implement such a system

  5. Calibration Analysis Software for the ATLAS Pixel Detector

    CERN Document Server

    AUTHOR|(INSPIRE)INSPIRE-00372086; The ATLAS collaboration

    2016-01-01

    The calibration of the ATLAS Pixel detector at LHC fulfils two main purposes: to tune the front-end configuration parameters for establishing the best operational settings and to measure the tuning performance through a subset of scans. An analysis framework has been set up in order to take actions on the detector given the outcome of a calibration scan (e.g. to create a mask for disabling noisy pixels). The software framework to control all aspects of the Pixel detector scans and analyses is called Calibration Console. The introduction of a new layer, equipped with new Front End-I4 Chips, required an update the Console architecture. It now handles scans and scans analyses applied together to chips with different characteristics. An overview of the newly developed Calibration Analysis Software will be presented, together with some preliminary result.

  6. Using Statistical Analysis Software to Advance Nitro Plasticizer Wettability

    Energy Technology Data Exchange (ETDEWEB)

    Shear, Trevor Allan [Los Alamos National Lab. (LANL), Los Alamos, NM (United States)

    2017-08-29

    Statistical analysis in science is an extremely powerful tool that is often underutilized. Additionally, it is frequently the case that data is misinterpreted or not used to its fullest extent. Utilizing the advanced software JMP®, many aspects of experimental design and data analysis can be evaluated and improved. This overview will detail the features of JMP® and how they were used to advance a project, resulting in time and cost savings, as well as the collection of scientifically sound data. The project analyzed in this report addresses the inability of a nitro plasticizer to coat a gold coated quartz crystal sensor used in a quartz crystal microbalance. Through the use of the JMP® software, the wettability of the nitro plasticizer was increased by over 200% using an atmospheric plasma pen, ensuring good sample preparation and reliable results.

  7. Spectrum analysis on quality requirements consideration in software design documents.

    Science.gov (United States)

    Kaiya, Haruhiko; Umemura, Masahiro; Ogata, Shinpei; Kaijiri, Kenji

    2013-12-01

    Software quality requirements defined in the requirements analysis stage should be implemented in the final products, such as source codes and system deployment. To guarantee this meta-requirement, quality requirements should be considered in the intermediate stages, such as the design stage or the architectural definition stage. We propose a novel method for checking whether quality requirements are considered in the design stage. In this method, a technique called "spectrum analysis for quality requirements" is applied not only to requirements specifications but also to design documents. The technique enables us to derive the spectrum of a document, and quality requirements considerations in the document are numerically represented in the spectrum. We can thus objectively identify whether the considerations of quality requirements in a requirements document are adapted to its design document. To validate the method, we applied it to commercial software systems with the help of a supporting tool, and we confirmed that the method worked well.

  8. ELIMINATING CONSERVATISM IN THE PIPING SYSTEM ANALYSIS PROCESS THROUGH APPLICATION OF A SUITE OF LOCALLY APPROPRIATE SEISMIC INPUT MOTIONS

    International Nuclear Information System (INIS)

    Crawford, Anthony L.; Spears, Robert E.; Russell, Mark J.

    2009-01-01

    Seismic analysis is of great importance in the evaluation of nuclear systems due to the heavy influence such loading has on their designs. Current Department of Energy seismic analysis techniques for a nuclear safety-related piping system typically involve application of a single conservative seismic input applied to the entire system (1). A significant portion of this conservatism comes from the need to address the overlapping uncertainties in the seismic input and in the building response that transmits that input motion to the piping system. The approach presented in this paper addresses these two sources of uncertainty through the application of a suite of 32 input motions whose collective performance addresses the total uncertainty while each individual motion represents a single variation of it. It represents an extension of the soil-structure interaction analysis methodology of SEI/ASCE 43-05 (2) from the structure to individual piping components. Because this approach is computationally intensive, automation and other measures have been developed to make such an analysis efficient. These measures are detailed in this paper

  9. Software for a measuring facility for activation analysis

    International Nuclear Information System (INIS)

    De Keyser, A.; De Roost, E.

    1985-01-01

    A software package has been developed for an APPLE P.C. The programs are intended to control an automated measuring station for photon activation analysis at GELINA, the linear accelerator of C.B.N.M. at Geel (Belgium). They allow to set-up a measuring scheme, to execute it under computer control, to accumulate and store 2 K-spectra using a built-in ADC and to output the results as listings, plots or evaluated reports

  10. Phenomenology and Qualitative Data Analysis Software (QDAS): A Careful Reconciliation

    OpenAIRE

    Brian Kelleher Sohn

    2017-01-01

    An oft-cited phenomenological methodologist, Max VAN MANEN (2014), claims that qualitative data analysis software (QDAS) is not an appropriate tool for phenomenological research. Yet phenomenologists rarely describe how phenomenology is to be done: pencil, paper, computer? DAVIDSON and DI GREGORIO (2011) urge QDAS contrarians such as VAN MANEN to get over their methodological loyalties and join the digital world, claiming that all qualitative researchers, whatever their methodology, perform p...

  11. SIMA: Python software for analysis of dynamic fluorescence imaging data

    Directory of Open Access Journals (Sweden)

    Patrick eKaifosh

    2014-09-01

    Full Text Available Fluorescence imaging is a powerful method for monitoring dynamic signals in the nervous system. However, analysis of dynamic fluorescence imaging data remains burdensome, in part due to the shortage of available software tools. To address this need, we have developed SIMA, an open source Python package that facilitates common analysis tasks related to fluorescence imaging. Functionality of this package includes correction of motion artifacts occurring during in vivo imaging with laser-scanning microscopy, segmentation of imaged fields into regions of interest (ROIs, and extraction of signals from the segmented ROIs. We have also developed a graphical user interface (GUI for manual editing of the automatically segmented ROIs and automated registration of ROIs across multiple imaging datasets. This software has been designed with flexibility in mind to allow for future extension with different analysis methods and potential integration with other packages. Software, documentation, and source code for the SIMA package and ROI Buddy GUI are freely available at http://www.losonczylab.org/sima/.

  12. Nuclear analysis software. Pt. 1: Spectrum transfer and reformatting (SPEDAC)

    International Nuclear Information System (INIS)

    1991-01-01

    GANAAS (Gamma, Activity, and Neutron Activation Analysis System) is one in the family of software packages developed under the auspices of the International Atomic Energy Agency. Primarily, the package was intended to support the IAEA Technical Assistance and Cooperation projects in developing countries. However, it is open domain software that can be copied and used by anybody, except for commercial purposes. All the nuclear analysis software provided by the IAEA has the same design philosophy and similar structure. The intention was to provide the user with maximum flexibility, at the same time with a simple and logical organization that requires minimum digging through the manuals. GANAAS is a modular system. It consists of several programmes that can be installed on the hard disk as the are needed. Obviously, some parts of they system are required in all cases. Those are installed at the beginning, without consulting the operator. GANAAS offers the opportunity to expand and improve the system. The gamma spectrum evaluation programmes using different fitting algorithms can be added to GANAAS, under the condition that the format of their input and output files corresponds to the rules of GANAAS. The same applies to the quantitative analysis parts of the programme

  13. IMMAN: free software for information theory-based chemometric analysis.

    Science.gov (United States)

    Urias, Ricardo W Pino; Barigye, Stephen J; Marrero-Ponce, Yovani; García-Jacas, César R; Valdes-Martiní, José R; Perez-Gimenez, Facundo

    2015-05-01

    The features and theoretical background of a new and free computational program for chemometric analysis denominated IMMAN (acronym for Information theory-based CheMoMetrics ANalysis) are presented. This is multi-platform software developed in the Java programming language, designed with a remarkably user-friendly graphical interface for the computation of a collection of information-theoretic functions adapted for rank-based unsupervised and supervised feature selection tasks. A total of 20 feature selection parameters are presented, with the unsupervised and supervised frameworks represented by 10 approaches in each case. Several information-theoretic parameters traditionally used as molecular descriptors (MDs) are adapted for use as unsupervised rank-based feature selection methods. On the other hand, a generalization scheme for the previously defined differential Shannon's entropy is discussed, as well as the introduction of Jeffreys information measure for supervised feature selection. Moreover, well-known information-theoretic feature selection parameters, such as information gain, gain ratio, and symmetrical uncertainty are incorporated to the IMMAN software ( http://mobiosd-hub.com/imman-soft/ ), following an equal-interval discretization approach. IMMAN offers data pre-processing functionalities, such as missing values processing, dataset partitioning, and browsing. Moreover, single parameter or ensemble (multi-criteria) ranking options are provided. Consequently, this software is suitable for tasks like dimensionality reduction, feature ranking, as well as comparative diversity analysis of data matrices. Simple examples of applications performed with this program are presented. A comparative study between IMMAN and WEKA feature selection tools using the Arcene dataset was performed, demonstrating similar behavior. In addition, it is revealed that the use of IMMAN unsupervised feature selection methods improves the performance of both IMMAN and WEKA

  14. Analysis of signal acquisition in GPS receiver software

    Directory of Open Access Journals (Sweden)

    Vlada S. Sokolović

    2011-01-01

    Full Text Available This paper presents a critical analysis of the flow signal processing carried out in GPS receiver software, which served as a basis for a critical comparison of different signal processing architectures within the GPS receiver. It is possible to achieve Increased flexibility and reduction of GPS device commercial costs, including those of mobile devices, by using radio technology software (SDR, Software Defined Radio. The SDR application can be realized when certain hardware components in a GPS receiver are replaced. Signal processing in the SDR is implemented using a programmable DSP (Digital Signal Processing or FPGA (Field Programmable Gate Array circuit, which allows a simple change of digital signal processing algorithms and a simple change of the receiver parameters. The starting point of the research is the signal generated on the satellite the structure of which is shown in the paper. Based on the GPS signal structure, a receiver is realized with a task to extract an appropriate signal from the spectrum and detect it. Based on collected navigation data, the receiver calculates the position of the end user. The signal coming from the satellite may be at the carrier frequencies of L1 and L2. Since the SPS is used in the civil service, all the tests shown in the work were performed on the L1 signal. The signal coming to the receiver is generated in the spread spectrum technology and is situated below the level of noise. Such signals often interfere with signals from the environment which presents a difficulty for a receiver to perform proper detection and signal processing. Therefore, signal processing technology is continually being improved, aiming at more accurate and faster signal processing. All tests were carried out on a signal acquired from the satellite using the SE4110 input circuit used for filtering, amplification and signal selection. The samples of the received signal were forwarded to a computer for data post processing, i. e

  15. Supervised Semi-Automated Data Analysis Software for Gas Chromatography / Differential Mobility Spectrometry (GC/DMS) Metabolomics Applications.

    Science.gov (United States)

    Peirano, Daniel J; Pasamontes, Alberto; Davis, Cristina E

    2016-09-01

    Modern differential mobility spectrometers (DMS) produce complex and multi-dimensional data streams that allow for near-real-time or post-hoc chemical detection for a variety of applications. An active area of interest for this technology is metabolite monitoring for biological applications, and these data sets regularly have unique technical and data analysis end user requirements. While there are initial publications on how investigators have individually processed and analyzed their DMS metabolomic data, there are no user-ready commercial or open source software packages that are easily used for this purpose. We have created custom software uniquely suited to analyze gas chromatograph / differential mobility spectrometry (GC/DMS) data from biological sources. Here we explain the implementation of the software, describe the user features that are available, and provide an example of how this software functions using a previously-published data set. The software is compatible with many commercial or home-made DMS systems. Because the software is versatile, it can also potentially be used for other similarly structured data sets, such as GC/GC and other IMS modalities.

  16. Open source software and crowdsourcing for energy analysis

    International Nuclear Information System (INIS)

    Bazilian, Morgan; Rice, Andrew; Rotich, Juliana; Howells, Mark; DeCarolis, Joseph; Macmillan, Stuart; Brooks, Cameron; Bauer, Florian; Liebreich, Michael

    2012-01-01

    Informed energy decision making requires effective software, high-quality input data, and a suitably trained user community. Developing these resources can be expensive and time consuming. Even when data and tools are intended for public re-use they often come with technical, legal, economic and social barriers that make them difficult to adopt, adapt and combine for use in new contexts. We focus on the promise of open, publically accessible software and data as well as crowdsourcing techniques to develop robust energy analysis tools that can deliver crucial, policy-relevant insight, particularly in developing countries, where planning resources are highly constrained—and the need to adapt these resources and methods to the local context is high. We survey existing research, which argues that these techniques can produce high-quality results, and also explore the potential role that linked, open data can play in both supporting the modelling process and in enhancing public engagement with energy issues. - Highlights: ► We focus on the promise of open, publicly accessible software and data. ► These emerging techniques can produce high-quality results for energy analysis. ► Developing economies require new techniques for energy planning.

  17. PuMA: the Porous Microstructure Analysis software

    Science.gov (United States)

    Ferguson, Joseph C.; Panerai, Francesco; Borner, Arnaud; Mansour, Nagi N.

    2018-01-01

    The Porous Microstructure Analysis (PuMA) software has been developed in order to compute effective material properties and perform material response simulations on digitized microstructures of porous media. PuMA is able to import digital three-dimensional images obtained from X-ray microtomography or to generate artificial microstructures. PuMA also provides a module for interactive 3D visualizations. Version 2.1 includes modules to compute porosity, volume fractions, and surface area. Two finite difference Laplace solvers have been implemented to compute the continuum tortuosity factor, effective thermal conductivity, and effective electrical conductivity. A random method has been developed to compute tortuosity factors from the continuum to rarefied regimes. Representative elementary volume analysis can be performed on each property. The software also includes a time-dependent, particle-based model for the oxidation of fibrous materials. PuMA was developed for Linux operating systems and is available as a NASA software under a US & Foreign release.

  18. A Parametric Model of Shoulder Articulation for Virtual Assessment of Space Suit Fit

    Science.gov (United States)

    Kim, K. Han; Young, Karen S.; Bernal, Yaritza; Boppana, Abhishektha; Vu, Linh Q.; Benson, Elizabeth A.; Jarvis, Sarah; Rajulu, Sudhakar L.

    2016-01-01

    Suboptimal suit fit is a known risk factor for crewmember shoulder injury. Suit fit assessment is however prohibitively time consuming and cannot be generalized across wide variations of body shapes and poses. In this work, we have developed a new design tool based on the statistical analysis of body shape scans. This tool is aimed at predicting the skin deformation and shape variations for any body size and shoulder pose for a target population. This new process, when incorporated with CAD software, will enable virtual suit fit assessments, predictively quantifying the contact volume, and clearance between the suit and body surface at reduced time and cost.

  19. Uses of software in digital image analysis: a forensic report

    Science.gov (United States)

    Sharma, Mukesh; Jha, Shailendra

    2010-02-01

    Forensic image analysis is required an expertise to interpret the content of an image or the image itself in legal matters. Major sub-disciplines of forensic image analysis with law enforcement applications include photo-grammetry, photographic comparison, content analysis and image authentication. It has wide applications in forensic science range from documenting crime scenes to enhancing faint or indistinct patterns such as partial fingerprints. The process of forensic image analysis can involve several different tasks, regardless of the type of image analysis performed. Through this paper authors have tried to explain these tasks, which are described in to three categories: Image Compression, Image Enhancement & Restoration and Measurement Extraction. With the help of examples like signature comparison, counterfeit currency comparison and foot-wear sole impression using the software Canvas and Corel Draw.

  20. A software platform for the analysis of dermatology images

    Science.gov (United States)

    Vlassi, Maria; Mavraganis, Vlasios; Asvestas, Panteleimon

    2017-11-01

    The purpose of this paper is to present a software platform developed in Python programming environment that can be used for the processing and analysis of dermatology images. The platform provides the capability for reading a file that contains a dermatology image. The platform supports image formats such as Windows bitmaps, JPEG, JPEG2000, portable network graphics, TIFF. Furthermore, it provides suitable tools for selecting, either manually or automatically, a region of interest (ROI) on the image. The automated selection of a ROI includes filtering for smoothing the image and thresholding. The proposed software platform has a friendly and clear graphical user interface and could be a useful second-opinion tool to a dermatologist. Furthermore, it could be used to classify images including from other anatomical parts such as breast or lung, after proper re-training of the classification algorithms.

  1. New analysis software for Viking Lander meteorological data

    Directory of Open Access Journals (Sweden)

    O. Kemppinen

    2013-02-01

    Full Text Available We have developed a set of tools that enable us to process Viking Lander meteorological data beyond what has been previously publicly available. Besides providing data for new periods of time, the existing data periods have been augmented by enhancing the data resolution significantly. This was accomplished by first transferring the original Prime computer version of the data analysis software to a standard Linux platform, and then by modifying the software to be able to process the data despite irregularities in the original raw data and reverse engineering various parameter files. In addition to this, the processing pipeline has been streamlined, making processing the data faster and easier. As a case example of new data, freshly processed Viking Lander 1 and 2 temperature records are described and briefly analyzed in ways that have not been previously possible due to the lack of data.

  2. OVERVIEW OF THE SAPHIRE PROBABILISTIC RISK ANALYSIS SOFTWARE

    Energy Technology Data Exchange (ETDEWEB)

    Smith, Curtis L.; Wood, Ted; Knudsen, James; Ma, Zhegang

    2016-10-01

    The Systems Analysis Programs for Hands-on Integrated Reliability Evaluations (SAPHIRE) is a software application developed for performing a complete probabilistic risk assessment (PRA) using a personal computer (PC) running the Microsoft Windows operating system. SAPHIRE Version 8 is funded by the U.S. Nuclear Regulatory Commission (NRC) and developed by the Idaho National Laboratory (INL). INL's primary role in this project is that of software developer and tester. However, INL also plays an important role in technology transfer by interfacing and supporting SAPHIRE users, who constitute a wide range of PRA practitioners from the NRC, national laboratories, the private sector, and foreign countries. In this paper, we provide an overview of the current technical capabilities found in SAPHIRE Version 8, including the user interface and enhanced solving algorithms.

  3. PET-Tool: a software suite for comprehensive processing and managing of Paired-End diTag (PET sequence data

    Directory of Open Access Journals (Sweden)

    Wei Chia-Lin

    2006-08-01

    Full Text Available Abstract Background We recently developed the Paired End diTag (PET strategy for efficient characterization of mammalian transcriptomes and genomes. The paired end nature of short PET sequences derived from long DNA fragments raised a new set of bioinformatics challenges, including how to extract PETs from raw sequence reads, and correctly yet efficiently map PETs to reference genome sequences. To accommodate and streamline data analysis of the large volume PET sequences generated from each PET experiment, an automated PET data process pipeline is desirable. Results We designed an integrated computation program package, PET-Tool, to automatically process PET sequences and map them to the genome sequences. The Tool was implemented as a web-based application composed of four modules: the Extractor module for PET extraction; the Examiner module for analytic evaluation of PET sequence quality; the Mapper module for locating PET sequences in the genome sequences; and the ProjectManager module for data organization. The performance of PET-Tool was evaluated through the analyses of 2.7 million PET sequences. It was demonstrated that PET-Tool is accurate and efficient in extracting PET sequences and removing artifacts from large volume dataset. Using optimized mapping criteria, over 70% of quality PET sequences were mapped specifically to the genome sequences. With a 2.4 GHz LINUX machine, it takes approximately six hours to process one million PETs from extraction to mapping. Conclusion The speed, accuracy, and comprehensiveness have proved that PET-Tool is an important and useful component in PET experiments, and can be extended to accommodate other related analyses of paired-end sequences. The Tool also provides user-friendly functions for data quality check and system for multi-layer data management.

  4. 76 FR 60939 - Metal Fatigue Analysis Performed by Computer Software

    Science.gov (United States)

    2011-09-30

    ... Software AGENCY: Nuclear Regulatory Commission. ACTION: Regulatory issue summary; request for comment... computer software package, WESTEMS TM , to demonstrate compliance with Section III, ``Rules for... Software Addressees All holders of, and applicants for, a power reactor operating license or construction...

  5. A software architectural framework specification for neutron activation analysis

    International Nuclear Information System (INIS)

    Preston, J.A.; Grant, C.N.

    2013-01-01

    Neutron Activation Analysis (NAA) is a sensitive multi-element nuclear analytical technique that has been routinely applied by research reactor (RR) facilities to environmental, nutritional, health related, geological and geochemical studies. As RR facilities face calls to increase their research output and impact, with existing or reducing budgets, automation of NAA offers a possible solution. However, automation has many challenges, not the least of which is a lack of system architecture standards to establish acceptable mechanisms for the various hardware/software and software/software interactions among data acquisition systems, specialised hardware such as sample changers, sample loaders, and data processing modules. This lack of standardization often results in automation hardware and software being incompatible with existing system components, in a facility looking to automate its NAA operations. This limits the availability of automation to a few RR facilities with adequate budgets or in-house engineering resources. What is needed is a modern open system architecture for NAA, that provides the required set of functionalities. This paper describes such an 'architectural framework' (OpenNAA), and portions of a reference implementation. As an example of the benefits, calculations indicate that applying this architecture to the compilation and QA steps associated with the analysis of 35 elements in 140 samples, with 14 SRM's, can reduce the time required by over 80 %. The adoption of open standards in the nuclear industry has been very successful over the years in promoting interchangeability and maximising the lifetime and output of nuclear measurement systems. OpenNAA will provide similar benefits within the NAA application space, safeguarding user investments in their current system, while providing a solid path for development into the future. (author)

  6. BIM Software Capability and Interoperability Analysis : An analytical approach toward structural usage of BIM software (S-BIM)

    OpenAIRE

    A. Taher, Ali

    2016-01-01

    This study focused on the structuralanalysis of BIM models. Different commercial software (Autodesk products and Rhinoceros)are presented through modelling and analysis of different structures with varying complexity,section properties, geometry, and material. Beside the commercial software, differentarchitectural and different tools for structural analysis are evaluated (dynamo, grasshopper,add-on tool, direct link, indirect link via IFC). BIM and Structural BIM (S-BIM)

  7. UPVapor: Cofrentes nuclear power plant production results analysis software

    International Nuclear Information System (INIS)

    Curiel, M.; Palomo, M. J.; Baraza, A.; Vaquer, J.

    2010-10-01

    UPVapor software version 02 has been developed for the Cofrentes nuclear power plant Data Analysis Department (Spain). It is an analysis graphical environment in which users have available all the plant variables registered in the process computer system (SIEC). In order to perform this, UPVapor software has many advanced graphic tools for work simplicity, as well as a friendly environment easy to use and with many configuration possibilities. Plant variables are classified in the same way that they are in SIEC computer and these values are taken from it through the network of Iberdrola. UPVapor can generate two different types of graphics: evolution graphs and X Y graphs. The first ones analyse the evolution up to twenty plant variables in a user's defined time period and according to historic plant files. Many tools are available: cursors, graphic configuration, mobile means, non valid data visualization ... Moreover, a particular analysis configuration can be saved, as a pre selection, giving the possibility of charging pre selection directly and developing quick monitoring of a group of preselected plant variables. In X Y graphs, it is possible to analyse a variable value against another variable in a defined time. As an option, users can filter previous data depending on a variable certain range, with the possibility of programming up to five filters. As well as the other graph, X Y graph has many configurations, saving and printing options. With UPVapor software, data analysts can save a valuable time during daily work and, as it is of easy utilization, it permits to other users to perform their own analysis without ask the analysts to develop. Besides, it can be used from any work centre with access to network framework. (Author)

  8. UPVapor: Cofrentes nuclear power plant production results analysis software

    Energy Technology Data Exchange (ETDEWEB)

    Curiel, M. [Logistica y Acondicionamientos Industriales SAU, Sorolla Center, local 10, Av. de las Cortes Valencianas No. 58, 46015 Valencia (Spain); Palomo, M. J. [ISIRYM, Universidad Politecnica de Valencia, Camino de Vera s/n, Valencia (Spain); Baraza, A. [Iberdrola Generacion S. A., Central Nuclear Cofrentes, Carretera Almansa Requena s/n, 04662 Cofrentes, Valencia (Spain); Vaquer, J., E-mail: m.curiel@lainsa.co [TITANIA Servicios Tecnologicos SL, Sorolla Center, local 10, Av. de las Cortes Valencianas No. 58, 46015 Valencia (Spain)

    2010-10-15

    UPVapor software version 02 has been developed for the Cofrentes nuclear power plant Data Analysis Department (Spain). It is an analysis graphical environment in which users have available all the plant variables registered in the process computer system (SIEC). In order to perform this, UPVapor software has many advanced graphic tools for work simplicity, as well as a friendly environment easy to use and with many configuration possibilities. Plant variables are classified in the same way that they are in SIEC computer and these values are taken from it through the network of Iberdrola. UPVapor can generate two different types of graphics: evolution graphs and X Y graphs. The first ones analyse the evolution up to twenty plant variables in a user's defined time period and according to historic plant files. Many tools are available: cursors, graphic configuration, mobile means, non valid data visualization ... Moreover, a particular analysis configuration can be saved, as a pre selection, giving the possibility of charging pre selection directly and developing quick monitoring of a group of preselected plant variables. In X Y graphs, it is possible to analyse a variable value against another variable in a defined time. As an option, users can filter previous data depending on a variable certain range, with the possibility of programming up to five filters. As well as the other graph, X Y graph has many configurations, saving and printing options. With UPVapor software, data analysts can save a valuable time during daily work and, as it is of easy utilization, it permits to other users to perform their own analysis without ask the analysts to develop. Besides, it can be used from any work centre with access to network framework. (Author)

  9. International Atomic Energy Agency intercomparison of ion beam analysis software

    Energy Technology Data Exchange (ETDEWEB)

    Barradas, N.P. [Instituto Tecnologico e Nuclear, Estrada Nacional No. 10, Apartado 21, 2686-953 Sacavem (Portugal); Centro de Fisica Nuclear da Universidade de Lisboa, Avenida do Professor Gama Pinto 2, 1649-003 Lisboa (Portugal)], E-mail: nunoni@itn.pt; Arstila, K. [K.U. Leuven, Instituut voor Kern-en Stralingsfysica, Celestijnenlaan 200D, B-3001 Leuven (Belgium); Battistig, G. [MFA Research Institute for Technical Physics and Materials Science, P.O. Box 49, H-1525 Budapest (Hungary); Bianconi, M. [CNR-IMM-Sezione di Bologna, Via P. Gobetti, 101, I-40129 Bologna (Italy); Dytlewski, N. [International Atomic Energy Agency, Wagramer Strasse 5, P.O. Box 100, A-1400 Vienna (Austria); Jeynes, C. [Surrey Ion Beam Centre, University of Surrey, Guildford, Surrey GU2 7XH (United Kingdom); Kotai, E. [KFKI Research Institute for Particle and Nuclear Physics, P.O. Box 49, H-1525 Budapest (Hungary); Lulli, G. [CNR-IMM-Sezione di Bologna, Via P. Gobetti, 101, I-40129 Bologna (Italy); Mayer, M. [Max-Planck-Institut fuer Plasmaphysik, EURATOM Association, Boltzmannstrasse 2, D-85748 Garching (Germany); Rauhala, E. [Accelerator Laboratory, Department of Physics, University of Helsinki, P.O. Box 43, FIN-00014 Helsinki (Finland); Szilagyi, E. [KFKI Research Institute for Particle and Nuclear Physics, P.O. Box 49, H-1525 Budapest (Hungary); Thompson, M. [Department of MS and E/Bard Hall 328, Cornell University, Ithaca, NY 14853 (United States)

    2007-09-15

    Ion beam analysis (IBA) includes a group of techniques for the determination of elemental concentration depth profiles of thin film materials. Often the final results rely on simulations, fits and calculations, made by dedicated codes written for specific techniques. Here we evaluate numerical codes dedicated to the analysis of Rutherford backscattering spectrometry, non-Rutherford elastic backscattering spectrometry, elastic recoil detection analysis and non-resonant nuclear reaction analysis data. Several software packages have been presented and made available to the community. New codes regularly appear, and old codes continue to be used and occasionally updated and expanded. However, those codes have to date not been validated, or even compared to each other. Consequently, IBA practitioners use codes whose validity, correctness and accuracy have never been validated beyond the authors' efforts. In this work, we present the results of an IBA software intercomparison exercise, where seven different packages participated. These were DEPTH, GISA, DataFurnace (NDF), RBX, RUMP, SIMNRA (all analytical codes) and MCERD (a Monte Carlo code). In a first step, a series of simulations were defined, testing different capabilities of the codes, for fixed conditions. In a second step, a set of real experimental data were analysed. The main conclusion is that the codes perform well within the limits of their design, and that the largest differences in the results obtained are due to differences in the fundamental databases used (stopping power and scattering cross section). In particular, spectra can be calculated including Rutherford cross sections with screening, energy resolution convolutions including energy straggling, and pileup effects, with agreement between the codes available at the 0.1% level. This same agreement is also available for the non-RBS techniques. This agreement is not limited to calculation of spectra from particular structures with predetermined

  10. Research and Development of Statistical Analysis Software System of Maize Seedling Experiment

    OpenAIRE

    Hui Cao

    2014-01-01

    In this study, software engineer measures were used to develop a set of software system for maize seedling experiments statistics and analysis works. During development works, B/S structure software design method was used and a set of statistics indicators for maize seedling evaluation were established. The experiments results indicated that this set of software system could finish quality statistics and analysis for maize seedling very well. The development of this software system explored a...

  11. A Parallel Software Pipeline for DMET Microarray Genotyping Data Analysis

    Directory of Open Access Journals (Sweden)

    Giuseppe Agapito

    2018-06-01

    Full Text Available Personalized medicine is an aspect of the P4 medicine (predictive, preventive, personalized and participatory based precisely on the customization of all medical characters of each subject. In personalized medicine, the development of medical treatments and drugs is tailored to the individual characteristics and needs of each subject, according to the study of diseases at different scales from genotype to phenotype scale. To make concrete the goal of personalized medicine, it is necessary to employ high-throughput methodologies such as Next Generation Sequencing (NGS, Genome-Wide Association Studies (GWAS, Mass Spectrometry or Microarrays, that are able to investigate a single disease from a broader perspective. A side effect of high-throughput methodologies is the massive amount of data produced for each single experiment, that poses several challenges (e.g., high execution time and required memory to bioinformatic software. Thus a main requirement of modern bioinformatic softwares, is the use of good software engineering methods and efficient programming techniques, able to face those challenges, that include the use of parallel programming and efficient and compact data structures. This paper presents the design and the experimentation of a comprehensive software pipeline, named microPipe, for the preprocessing, annotation and analysis of microarray-based Single Nucleotide Polymorphism (SNP genotyping data. A use case in pharmacogenomics is presented. The main advantages of using microPipe are: the reduction of errors that may happen when trying to make data compatible among different tools; the possibility to analyze in parallel huge datasets; the easy annotation and integration of data. microPipe is available under Creative Commons license, and is freely downloadable for academic and not-for-profit institutions.

  12. Comparison of two software versions for assessment of body-composition analysis by DXA

    DEFF Research Database (Denmark)

    Vozarova, B; Wang, J; Weyer, C

    2001-01-01

    To compare two software versions provided by Lunar CO: for assessment of body composition analysis by DXA.......To compare two software versions provided by Lunar CO: for assessment of body composition analysis by DXA....

  13. Graph based communication analysis for hardware/software codesign

    DEFF Research Database (Denmark)

    Knudsen, Peter Voigt; Madsen, Jan

    1999-01-01

    In this paper we present a coarse grain CDFG (Control/Data Flow Graph) model suitable for hardware/software partitioning of single processes and demonstrate how it is necessary to perform various transformations on the graph structure before partitioning in order to achieve a structure that allows...... for accurate estimation of communication overhead between nodes mapped to different processors. In particular, we demonstrate how various transformations of control structures can lead to a more accurate communication analysis and more efficient implementations. The purpose of the transformations is to obtain...

  14. Development of RCM analysis software for Korean nuclear power plants

    Energy Technology Data Exchange (ETDEWEB)

    Kim, Young Ho; Choi, Kwang Hee; Jeong, Hyeong Jong [Korea Electric Power Research Institute, Taejon (Korea, Republic of)

    1999-12-31

    A software called KEPCO RCM workstation (KRCM) has been developed to optimize the maintenance strategies of Korean nuclear power plants. The program modules of the KRCM were designed in a manner that combines EPRI methodologies and KEPRI analysis technique. The KRCM is being applied to the three pilot system, chemical and volume control system, main steam system, and compressed air system of Yonggwang Units 1 and 2. In addition, the KRCM can be utilized as a tool to meet a part of the requirements of maintenance rule (MR) imposed by U.S. NRC. 3 refs., 4 figs. (Author)

  15. Development of RCM analysis software for Korean nuclear power plants

    Energy Technology Data Exchange (ETDEWEB)

    Kim, Young Ho; Choi, Kwang Hee; Jeong, Hyeong Jong [Korea Electric Power Research Institute, Taejon (Korea, Republic of)

    1998-12-31

    A software called KEPCO RCM workstation (KRCM) has been developed to optimize the maintenance strategies of Korean nuclear power plants. The program modules of the KRCM were designed in a manner that combines EPRI methodologies and KEPRI analysis technique. The KRCM is being applied to the three pilot system, chemical and volume control system, main steam system, and compressed air system of Yonggwang Units 1 and 2. In addition, the KRCM can be utilized as a tool to meet a part of the requirements of maintenance rule (MR) imposed by U.S. NRC. 3 refs., 4 figs. (Author)

  16. Gamma camera image processing and graphical analysis mutual software system

    International Nuclear Information System (INIS)

    Wang Zhiqian; Chen Yongming; Ding Ailian; Ling Zhiye; Jin Yongjie

    1992-01-01

    GCCS gamma camera image processing and graphical analysis system is a special mutual software system. It is mainly used to analyse various patient data acquired from gamma camera. This system is used on IBM PC, PC/XT or PC/AT. It consists of several parts: system management, data management, device management, program package and user programs. The system provides two kinds of user interfaces: command menu and command characters. It is easy to change and enlarge this system because it is best modularized. The user programs include almost all the clinical protocols used now

  17. Discriminant Analysis of the Effects of Software Cost Drivers on ...

    African Journals Online (AJOL)

    The paper work investigates the effect of software cost drivers on project schedule estimation of software development projects in Nigeria. Specifically, the paper determines the extent to which software cost variables affect our software project time schedule in our environment. Such studies are lacking in the recent ...

  18. Tool Support for Parametric Analysis of Large Software Simulation Systems

    Science.gov (United States)

    Schumann, Johann; Gundy-Burlet, Karen; Pasareanu, Corina; Menzies, Tim; Barrett, Tony

    2008-01-01

    The analysis of large and complex parameterized software systems, e.g., systems simulation in aerospace, is very complicated and time-consuming due to the large parameter space, and the complex, highly coupled nonlinear nature of the different system components. Thus, such systems are generally validated only in regions local to anticipated operating points rather than through characterization of the entire feasible operational envelope of the system. We have addressed the factors deterring such an analysis with a tool to support envelope assessment: we utilize a combination of advanced Monte Carlo generation with n-factor combinatorial parameter variations to limit the number of cases, but still explore important interactions in the parameter space in a systematic fashion. Additional test-cases, automatically generated from models (e.g., UML, Simulink, Stateflow) improve the coverage. The distributed test runs of the software system produce vast amounts of data, making manual analysis impossible. Our tool automatically analyzes the generated data through a combination of unsupervised Bayesian clustering techniques (AutoBayes) and supervised learning of critical parameter ranges using the treatment learner TAR3. The tool has been developed around the Trick simulation environment, which is widely used within NASA. We will present this tool with a GN&C (Guidance, Navigation and Control) simulation of a small satellite system.

  19. Development of a software for INAA analysis automation

    International Nuclear Information System (INIS)

    Zahn, Guilherme S.; Genezini, Frederico A.; Figueiredo, Ana Maria G.; Ticianelli, Regina B.

    2013-01-01

    In this work, a software to automate the post-counting tasks in comparative INAA has been developed that aims to become more flexible than the available options, integrating itself with some of the routines currently in use in the IPEN Activation Analysis Laboratory and allowing the user to choose between a fully-automatic analysis or an Excel-oriented one. The software makes use of the Genie 2000 data importing and analysis routines and stores each 'energy-counts-uncertainty' table as a separate ASCII file that can be used later on if required by the analyst. Moreover, it generates an Excel-compatible CSV (comma separated values) file with only the relevant results from the analyses for each sample or comparator, as well as the results of the concentration calculations and the results obtained with four different statistical tools (unweighted average, weighted average, normalized residuals and Rajeval technique), allowing the analyst to double-check the results. Finally, a 'summary' CSV file is also produced, with the final concentration results obtained for each element in each sample. (author)

  20. Models for composing software : an analysis of software composition and objects

    NARCIS (Netherlands)

    Bergmans, Lodewijk

    1999-01-01

    In this report, we investigate component-based software construction with a focus on composition. In particular we try to analyze the requirements and issues for components and software composition. As a means to understand this research area, we introduce a canonical model for representing

  1. PROTEINCHALLENGE: Crowd sourcing in proteomics analysis and software development

    DEFF Research Database (Denmark)

    Martin, Sarah F.; Falkenberg, Heiner; Dyrlund, Thomas Franck

    2013-01-01

    , including arguments for community-wide open source software development and “big data” compatible solutions for the future. For the meantime, we have laid out ten top tips for data processing. With these at hand, a first large-scale proteomics analysis hopefully becomes less daunting to navigate.......However there is clearly a real need for robust tools, standard operating procedures and general acceptance of best practises. Thus we submit to the proteomics community a call for a community-wide open set of proteomics analysis challenges—PROTEINCHALLENGE—that directly target and compare data analysis workflows......In large-scale proteomics studies there is a temptation, after months of experimental work, to plug resulting data into a convenient—if poorly implemented—set of tools, which may neither do the data justice nor help answer the scientific question. In this paper we have captured key concerns...

  2. Hazard Analysis of Software Requirements Specification for Process Module of FPGA-based Controllers in NPP

    Energy Technology Data Exchange (ETDEWEB)

    Jung; Sejin; Kim, Eui-Sub; Yoo, Junbeom [Konkuk University, Seoul (Korea, Republic of); Keum, Jong Yong; Lee, Jang-Soo [Korea Atomic Energy Research Institute, Daejeon (Korea, Republic of)

    2016-10-15

    Software in PLC, FPGA which are used to develop I and C system also should be analyzed to hazards and risks before used. NUREG/CR-6430 proposes the method for performing software hazard analysis. It suggests analysis technique for software affected hazards and it reveals that software hazard analysis should be performed with the aspects of software life cycle such as requirements analysis, design, detailed design, implements. It also provides the guide phrases for applying software hazard analysis. HAZOP (Hazard and operability analysis) is one of the analysis technique which is introduced in NUREG/CR-6430 and it is useful technique to use guide phrases. HAZOP is sometimes used to analyze the safety of software. Analysis method of NUREG/CR-6430 had been used in Korea nuclear power plant software for PLC development. Appropriate guide phrases and analysis process are selected to apply efficiently and NUREG/CR-6430 provides applicable methods for software hazard analysis is identified in these researches. We perform software hazard analysis of FPGA software requirements specification with two approaches which are NUREG/CR-6430 and HAZOP with using general GW. We also perform the comparative analysis with them. NUREG/CR-6430 approach has several pros and cons comparing with the HAZOP with general guide words and approach. It is enough applicable to analyze the software requirements specification of FPGA.

  3. Asterias: A Parallelized Web-based Suite for the Analysis of Expression and aCGH Data

    Directory of Open Access Journals (Sweden)

    Ramón Díaz-Uriarte

    2007-01-01

    Full Text Available The analysis of expression and CGH arrays plays a central role in the study of complex diseases, especially cancer, including finding markers for early diagnosis and prognosis, choosing an optimal therapy, or increasing our understanding of cancer development and metastasis. Asterias (http://www.asterias.info is an integrated collection of freely-accessible web tools for the analysis of gene expression and aCGH data. Most of the tools use parallel computing (via MPI and run on a server with 60 CPUs for computation; compared to a desktop or server-based but not parallelized application, parallelization provides speed ups of factors up to 50. Most of our applications allow the user to obtain additional information for user-selected genes (chromosomal location, PubMed ids, Gene Ontology terms, etc. by using clickable links in tables and/or fi gures. Our tools include: normalization of expression and aCGH data (DNMAD; converting between different types of gene/clone and protein identifi ers (IDconverter/IDClight; fi ltering and imputation (preP; finding differentially expressed genes related to patient class and survival data (Pomelo II; searching for models of class prediction (Tnasas; using random forests to search for minimal models for class prediction or for large subsets of genes with predictive capacity (GeneSrF; searching for molecular signatures and predictive genes with survival data (SignS; detecting regions of genomic DNA gain or loss (ADaCGH. The capability to send results between different applications, access to additional functional information, and parallelized computation make our suite unique and exploit features only available to web-based applications.

  4. Comparative analysis of results between CASMO, MCNP and Serpent for a suite of Benchmark problems on BWR reactors

    International Nuclear Information System (INIS)

    Xolocostli M, J. V.; Vargas E, S.; Gomez T, A. M.; Reyes F, M. del C.; Del Valle G, E.

    2014-10-01

    In this paper a comparison is made in analyzing the suite of Benchmark problems for reactors type BWR between CASMO-4, MCNP6 and Serpent code. The Benchmark problem consists of two different geometries: a fuel cell of a pin and assembly type BWR. To facilitate the study of reactors physics in the fuel pin their nuclear characteristics are provided to detail, such as burnt dependence, the reactivity of selected nuclide, etc. With respect to the fuel assembly, the presented results are regarding to infinite multiplication factor for burning different steps and different vacuum conditions. Making the analysis of this set of Benchmark problems provides comprehensive test problems for the next fuels generation of BWR reactors with high extended burned. It is important to note that when making this comparison the purpose is to validate the methodologies used in modeling for different operating conditions, if the case is of other BWR assembly. The results will be within a range with some uncertainty, considering that does not depend on code that is used. Escuela Superior de Fisica y Matematicas of Instituto Politecnico Nacional (IPN (Mexico) has accumulated some experience in using Serpent, due to the potential of this code over other commercial codes such as CASMO and MCNP. The obtained results for the infinite multiplication factor are encouraging and motivate the studies to continue with the generation of the X S of a core to a next step a respective nuclear data library is constructed and this can be used by codes developed as part of the development project of the Mexican Analysis Platform of Nuclear Reactors AZTLAN. (Author)

  5. Metadata database and data analysis software for the ground-based upper atmospheric data developed by the IUGONET project

    Science.gov (United States)

    Hayashi, H.; Tanaka, Y.; Hori, T.; Koyama, Y.; Shinbori, A.; Abe, S.; Kagitani, M.; Kouno, T.; Yoshida, D.; Ueno, S.; Kaneda, N.; Yoneda, M.; Tadokoro, H.; Motoba, T.; Umemura, N.; Iugonet Project Team

    2011-12-01

    The Inter-university Upper atmosphere Global Observation NETwork (IUGONET) is a Japanese inter-university project by the National Institute of Polar Research (NIPR), Tohoku University, Nagoya University, Kyoto University, and Kyushu University to build a database of metadata for ground-based observations of the upper atmosphere. The IUGONET institutes/universities have been collecting various types of data by radars, magnetometers, photometers, radio telescopes, helioscopes, etc. at various locations all over the world and at various altitude layers from the Earth's surface to the Sun. The metadata database will be of great help to researchers in efficiently finding and obtaining these observational data spread over the institutes/universities. This should also facilitate synthetic analysis of multi-disciplinary data, which will lead to new types of research in the upper atmosphere. The project has also been developing a software to help researchers download, visualize, and analyze the data provided from the IUGONET institutes/universities. The metadata database system is built on the platform of DSpace, which is an open source software for digital repositories. The data analysis software is written in the IDL language with the TDAS (THEMIS Data Analysis Software suite) library. These products have been just released for beta-testing.

  6. Don't Blame the Software: Using Qualitative Data Analysis Software Successfully in Doctoral Research

    Directory of Open Access Journals (Sweden)

    Michelle Salmona

    2016-07-01

    Full Text Available In this article, we explore the learning experiences of doctoral candidates as they use qualitative data analysis software (QDAS. Of particular interest is the process of adopting technology during the development of research methodology. Using an action research approach, data was gathered over five years from advanced doctoral research candidates and supervisors. The technology acceptance model (TAM was then applied as a theoretical analytic lens for better understanding how students interact with new technology. Findings relate to two significant barriers which doctoral students confront: 1. aligning perceptions of ease of use and usefulness is essential in overcoming resistance to technological change; 2. transparency into the research process through technology promotes insights into methodological challenges. Transitioning through both barriers requires a competent foundation in qualitative research. The study acknowledges the importance of higher degree research, curriculum reform and doctoral supervision in post-graduate research training together with their interconnected relationships in support of high-quality inquiry. URN: http://nbn-resolving.de/urn:nbn:de:0114-fqs1603117

  7. System and software safety analysis for the ERA control computer

    International Nuclear Information System (INIS)

    Beerthuizen, P.G.; Kruidhof, W.

    2001-01-01

    The European Robotic Arm (ERA) is a seven degrees of freedom relocatable anthropomorphic robotic manipulator system, to be used in manned space operation on the International Space Station, supporting the assembly and external servicing of the Russian segment. The safety design concept and implementation of the ERA is described, in particular with respect to the central computer's software design. A top-down analysis and specification process is used to down flow the safety aspects of the ERA system towards the subsystems, which are produced by a consortium of companies in many countries. The user requirements documents and the critical function list are the key documents in this process. Bottom-up analysis (FMECA) and test, on both subsystem and system level, are the basis for safety verification. A number of examples show the use of the approach and methods used

  8. Compositional Solution Space Quantification for Probabilistic Software Analysis

    Science.gov (United States)

    Borges, Mateus; Pasareanu, Corina S.; Filieri, Antonio; d'Amorim, Marcelo; Visser, Willem

    2014-01-01

    Probabilistic software analysis aims at quantifying how likely a target event is to occur during program execution. Current approaches rely on symbolic execution to identify the conditions to reach the target event and try to quantify the fraction of the input domain satisfying these conditions. Precise quantification is usually limited to linear constraints, while only approximate solutions can be provided in general through statistical approaches. However, statistical approaches may fail to converge to an acceptable accuracy within a reasonable time. We present a compositional statistical approach for the efficient quantification of solution spaces for arbitrarily complex constraints over bounded floating-point domains. The approach leverages interval constraint propagation to improve the accuracy of the estimation by focusing the sampling on the regions of the input domain containing the sought solutions. Preliminary experiments show significant improvement on previous approaches both in results accuracy and analysis time.

  9. HistFitter software framework for statistical data analysis

    CERN Document Server

    Baak, M.; Côte, D.; Koutsman, A.; Lorenz, J.; Short, D.

    2015-01-01

    We present a software framework for statistical data analysis, called HistFitter, that has been used extensively by the ATLAS Collaboration to analyze big datasets originating from proton-proton collisions at the Large Hadron Collider at CERN. Since 2012 HistFitter has been the standard statistical tool in searches for supersymmetric particles performed by ATLAS. HistFitter is a programmable and flexible framework to build, book-keep, fit, interpret and present results of data models of nearly arbitrary complexity. Starting from an object-oriented configuration, defined by users, the framework builds probability density functions that are automatically fitted to data and interpreted with statistical tests. A key innovation of HistFitter is its design, which is rooted in core analysis strategies of particle physics. The concepts of control, signal and validation regions are woven into its very fabric. These are progressively treated with statistically rigorous built-in methods. Being capable of working with mu...

  10. An Analysis of Related Software Cycles Among Organizations, People and the Software Industry

    National Research Council Canada - National Science Library

    Moore, Robert; Adams, Brady

    2008-01-01

    .... This thesis intends to explore the moderating factors of these three distinct and disjointed cycles and propose courses of action towards mitigating various issues and problems inherent in the software upgrade process...

  11. Using CASE Software to Teach Undergraduates Systems Analysis and Design.

    Science.gov (United States)

    Wilcox, Russell E.

    1988-01-01

    Describes the design and delivery of a college course for information system students utilizing a Computer-Aided Software Engineering program. Discusses class assignments, cooperative learning, student attitudes, and the advantages of using this software in the course. (CW)

  12. Fault Tree Analysis for Safety/Security Verification in Aviation Software

    Directory of Open Access Journals (Sweden)

    Andrew J. Kornecki

    2013-01-01

    Full Text Available The Next Generation Air Traffic Management system (NextGen is a blueprint of the future National Airspace System. Supporting NextGen is a nation-wide Aviation Simulation Network (ASN, which allows integration of a variety of real-time simulations to facilitate development and validation of the NextGen software by simulating a wide range of operational scenarios. The ASN system is an environment, including both simulated and human-in-the-loop real-life components (pilots and air traffic controllers. Real Time Distributed Simulation (RTDS developed at Embry Riddle Aeronautical University, a suite of applications providing low and medium fidelity en-route simulation capabilities, is one of the simulations contributing to the ASN. To support the interconnectivity with the ASN, we designed and implemented a dedicated gateway acting as an intermediary, providing logic for two-way communication and transfer messages between RTDS and ASN and storage for the exchanged data. It has been necessary to develop and analyze safety/security requirements for the gateway software based on analysis of system assets, hazards, threats and attacks related to ultimate real-life future implementation. Due to the nature of the system, the focus was placed on communication security and the related safety of the impacted aircraft in the simulation scenario. To support development of safety/security requirements, a well-established fault tree analysis technique was used. This fault tree model-based analysis, supported by a commercial tool, was a foundation to propose mitigations assuring the gateway system safety and security. 

  13. Software for 3D diagnostic image reconstruction and analysis

    International Nuclear Information System (INIS)

    Taton, G.; Rokita, E.; Sierzega, M.; Klek, S.; Kulig, J.; Urbanik, A.

    2005-01-01

    Recent advances in computer technologies have opened new frontiers in medical diagnostics. Interesting possibilities are the use of three-dimensional (3D) imaging and the combination of images from different modalities. Software prepared in our laboratories devoted to 3D image reconstruction and analysis from computed tomography and ultrasonography is presented. In developing our software it was assumed that it should be applicable in standard medical practice, i.e. it should work effectively with a PC. An additional feature is the possibility of combining 3D images from different modalities. The reconstruction and data processing can be conducted using a standard PC, so low investment costs result in the introduction of advanced and useful diagnostic possibilities. The program was tested on a PC using DICOM data from computed tomography and TIFF files obtained from a 3D ultrasound system. The results of the anthropomorphic phantom and patient data were taken into consideration. A new approach was used to achieve spatial correlation of two independently obtained 3D images. The method relies on the use of four pairs of markers within the regions under consideration. The user selects the markers manually and the computer calculates the transformations necessary for coupling the images. The main software feature is the possibility of 3D image reconstruction from a series of two-dimensional (2D) images. The reconstructed 3D image can be: (1) viewed with the most popular methods of 3D image viewing, (2) filtered and processed to improve image quality, (3) analyzed quantitatively (geometrical measurements), and (4) coupled with another, independently acquired 3D image. The reconstructed and processed 3D image can be stored at every stage of image processing. The overall software performance was good considering the relatively low costs of the hardware used and the huge data sets processed. The program can be freely used and tested (source code and program available at

  14. ATLAS tile calorimeter cesium calibration control and analysis software

    International Nuclear Information System (INIS)

    Solovyanov, O; Solodkov, A; Starchenko, E; Karyukhin, A; Isaev, A; Shalanda, N

    2008-01-01

    An online control system to calibrate and monitor ATLAS Barrel hadronic calorimeter (TileCal) with a movable radioactive source, driven by liquid flow, is described. To read out and control the system an online software has been developed, using ATLAS TDAQ components like DVS (Diagnostic and Verification System) to verify the hardware before running, IS (Information Server) for data and status exchange between networked computers, and other components like DDC (DCS to DAQ Connection), to connect to PVSS-based slow control systems of Tile Calorimeter, high voltage and low voltage. A system of scripting facilities, based on Python language, is used to handle all the calibration and monitoring processes from hardware perspective to final data storage, including various abnormal situations. A QT based graphical user interface to display the status of the calibration system during the cesium source scan is described. The software for analysis of the detector response, using online data, is discussed. Performance of the system and first experience from the ATLAS pit are presented

  15. Phenomenology and Qualitative Data Analysis Software (QDAS: A Careful Reconciliation

    Directory of Open Access Journals (Sweden)

    Brian Kelleher Sohn

    2017-01-01

    Full Text Available An oft-cited phenomenological methodologist, Max VAN MANEN (2014, claims that qualitative data analysis software (QDAS is not an appropriate tool for phenomenological research. Yet phenomenologists rarely describe how phenomenology is to be done: pencil, paper, computer? DAVIDSON and DI GREGORIO (2011 urge QDAS contrarians such as VAN MANEN to get over their methodological loyalties and join the digital world, claiming that all qualitative researchers, whatever their methodology, perform processes aided by QDAS: disaggregation and recontextualization of texts. Other phenomenologists exemplify DAVIDSON and DI GREGORIO's observation that arguments against QDAS often identify problems more closely related to the researchers than QDAS. But the concerns about technology of McLUHAN (2003 [1964], HEIDEGGER (2008 [1977], and FLUSSER (2013 cannot be ignored. In this conceptual article I answer the questions of phenomenologists and the call of QDAS methodologists to describe how I used QDAS to carry out a phenomenological study in order to guide others who choose to reconcile the use of software to assist their research. URN: http://nbn-resolving.de/urn:nbn:de:0114-fqs1701142

  16. ATLAS tile calorimeter cesium calibration control and analysis software

    Energy Technology Data Exchange (ETDEWEB)

    Solovyanov, O; Solodkov, A; Starchenko, E; Karyukhin, A; Isaev, A; Shalanda, N [Institute for High Energy Physics, Protvino 142281 (Russian Federation)], E-mail: Oleg.Solovyanov@ihep.ru

    2008-07-01

    An online control system to calibrate and monitor ATLAS Barrel hadronic calorimeter (TileCal) with a movable radioactive source, driven by liquid flow, is described. To read out and control the system an online software has been developed, using ATLAS TDAQ components like DVS (Diagnostic and Verification System) to verify the hardware before running, IS (Information Server) for data and status exchange between networked computers, and other components like DDC (DCS to DAQ Connection), to connect to PVSS-based slow control systems of Tile Calorimeter, high voltage and low voltage. A system of scripting facilities, based on Python language, is used to handle all the calibration and monitoring processes from hardware perspective to final data storage, including various abnormal situations. A QT based graphical user interface to display the status of the calibration system during the cesium source scan is described. The software for analysis of the detector response, using online data, is discussed. Performance of the system and first experience from the ATLAS pit are presented.

  17. Experimental software for modeling and interpreting educational data analysis processes

    Directory of Open Access Journals (Sweden)

    Natalya V. Zorina

    2017-12-01

    Full Text Available Problems, tasks and processes of educational data mining are considered in this article. The objective is to create a fundamentally new information system of the University using the results educational data analysis. One of the functions of such a system is knowledge extraction from accumulated in the operation process data. The creation of the national system of this type is an iterative and time-consuming process requiring the preliminary studies and incremental prototyping modules. The novelty of such systems is that there is a lack of those using this methodology of the development, for this purpose a number of experiments was carried out in order to collect data, choose appropriate methods for the study and to interpret them. As a result of the experiment, the authors were available sources available for analysis in the information environment of the home university. The data were taken from the semester performance, obtained from the information system of the training department of the Institute of IT MTU MIREA, the data obtained as a result of the independent work of students and data, using specially designed Google-forms. To automate the collection of information and analysis of educational data, an experimental software package was created. As a methodology for developing the experimental software complex, a decision was made using the methodologies of rational-empirical complexes (REX and single-experimentation program technologies (TPEI. The details of the program implementation of the complex are described in detail, conclusions are given about the availability of the data sources used, and conclusions are drawn about the prospects for further development.

  18. Visual data mining and analysis of software repositories

    NARCIS (Netherlands)

    Voinea, S.L.; Telea, A.C.

    2007-01-01

    In this article we describe an ongoing effort to integrate information visualization techniques into the process of configuration management for software systems. Our focus is to help software engineers manage the evolution of large and complex software systems by offering them effective and

  19. Real-time development of data acquisition and analysis software for hands-on physiology education in neuroscience: G-PRIME.

    Science.gov (United States)

    Lott, Gus K; Johnson, Bruce R; Bonow, Robert H; Land, Bruce R; Hoy, Ronald R

    2009-01-01

    We report on the real-time creation of an application for hands-on neurophysiology in an advanced undergraduate teaching laboratory. Enabled by the rapid software development tools included in the Matlab technical computing environment (The Mathworks, Natick, MA), a team, consisting of a neurophysiology educator and a biophysicist trained as an electrical engineer, interfaced to a course of approximately 15 students from engineering and biology backgrounds. The result is the powerful freeware data acquisition and analysis environment, "g-PRIME." The software was developed from week to week in response to curriculum demands, and student feedback. The program evolved from a simple software oscilloscope, enabling RC circuit analysis, to a suite of tools supporting analysis of neuronal excitability and synaptic transmission analysis in invertebrate model systems. The program has subsequently expanded in application to university courses, research, and high school projects in the US and abroad as free courseware.

  20. Automated software analysis of nuclear core discharge data

    International Nuclear Information System (INIS)

    Larson, T.W.; Halbig, J.K.; Howell, J.A.; Eccleston, G.W.; Klosterbuer, S.F.

    1993-03-01

    Monitoring the fueling process of an on-load nuclear reactor is a full-time job for nuclear safeguarding agencies. Nuclear core discharge monitors (CDMS) can provide continuous, unattended recording of the reactor's fueling activity for later, qualitative review by a safeguards inspector. A quantitative analysis of this collected data could prove to be a great asset to inspectors because more information can be extracted from the data and the analysis time can be reduced considerably. This paper presents a prototype for an automated software analysis system capable of identifying when fuel bundle pushes occurred and monitoring the power level of the reactor. Neural network models were developed for calculating the region on the reactor face from which the fuel was discharged and predicting the burnup. These models were created and tested using actual data collected from a CDM system at an on-load reactor facility. Collectively, these automated quantitative analysis programs could help safeguarding agencies to gain a better perspective on the complete picture of the fueling activity of an on-load nuclear reactor. This type of system can provide a cost-effective solution for automated monitoring of on-load reactors significantly reducing time and effort

  1. Integrated Software Environment for Pressurized Thermal Shock Analysis

    Directory of Open Access Journals (Sweden)

    Dino Araneo

    2011-01-01

    Full Text Available The present paper describes the main features and an application to a real Nuclear Power Plant (NPP of an Integrated Software Environment (in the following referred to as “platform” developed at University of Pisa (UNIPI to perform Pressurized Thermal Shock (PTS analysis. The platform is written in Java for the portability and it implements all the steps foreseen in the methodology developed at UNIPI for the deterministic analysis of PTS scenarios. The methodology starts with the thermal hydraulic analysis of the NPP with a system code (such as Relap5-3D and Cathare2, during a selected transient scenario. The results so obtained are then processed to provide boundary conditions for the next step, that is, a CFD calculation. Once the system pressure and the RPV wall temperature are known, the stresses inside the RPV wall can be calculated by mean a Finite Element (FE code. The last step of the methodology is the Fracture Mechanics (FM analysis, using weight functions, aimed at evaluating the stress intensity factor (KI at crack tip to be compared with the critical stress intensity factor KIc. The platform automates all these steps foreseen in the methodology once the user specifies a number of boundary conditions at the beginning of the simulation.

  2. Cost Analysis of Poor Quality Using a Software Simulation

    Directory of Open Access Journals (Sweden)

    Jana Fabianová

    2017-02-01

    Full Text Available The issues of quality, cost of poor quality and factors affecting quality are crucial to maintaining a competitiveness regarding to business activities. Use of software applications and computer simulation enables more effective quality management. Simulation tools offer incorporating the variability of more variables in experiments and evaluating their common impact on the final output. The article presents a case study focused on the possibility of using computer simulation Monte Carlo in the field of quality management. Two approaches for determining the cost of poor quality are introduced here. One from retrospective scope of view, where the cost of poor quality and production process are calculated based on historical data. The second approach uses the probabilistic characteristics of the input variables by means of simulation, and reflects as a perspective view of the costs of poor quality. Simulation output in the form of a tornado and sensitivity charts complement the risk analysis.

  3. Knowledge-based requirements analysis for automating software development

    Science.gov (United States)

    Markosian, Lawrence Z.

    1988-01-01

    We present a new software development paradigm that automates the derivation of implementations from requirements. In this paradigm, informally-stated requirements are expressed in a domain-specific requirements specification language. This language is machine-understable and requirements expressed in it are captured in a knowledge base. Once the requirements are captured, more detailed specifications and eventually implementations are derived by the system using transformational synthesis. A key characteristic of the process is that the required human intervention is in the form of providing problem- and domain-specific engineering knowledge, not in writing detailed implementations. We describe a prototype system that applies the paradigm in the realm of communication engineering: the prototype automatically generates implementations of buffers following analysis of the requirements on each buffer.

  4. Nonlinear analysis of reinforced concrete structures using software package abaqus

    Directory of Open Access Journals (Sweden)

    Marković Nemanja

    2014-01-01

    Full Text Available Reinforced concrete (AB is characterized by huge inhomogeneity resulting from the material characteristics of the concrete, then, quasi-brittle behavior during failure. These and other phenomena require the introduction of material nonlinearity in the modeling of reinforced concrete structures. This paper presents the modeling reinforced concrete in the software package ABAQUS. A brief theoretical overview is presented of methods such as: Concrete Damage Plasticity (CDP, Smeared Concrete Cracking (CSC, Cap Plasticity (CP and Drucker-Prager model (DPM. We performed a nonlinear analysis of two-storey reinforced concrete frame by applying CDP method for modeling material nonlinearity of concrete. We have analyzed damage zones, crack propagation and loading-deflection ratio.

  5. The Database and Data Analysis Software of Radiation Monitoring System

    International Nuclear Information System (INIS)

    Wang Weizhen; Li Jianmin; Wang Xiaobing; Hua Zhengdong; Xu Xunjiang

    2009-01-01

    Shanghai Synchrotron Radiation Facility (SSRF for short) is a third-generation light source building in China, including a 150MeV injector, 3.5GeV booster, 3.5GeV storage ring and an amount of beam line stations. The data is fetched by the monitoring computer from collecting modules in the front end, and saved in the MySQL database in the managing computer. The data analysis software is coded with Python, a script language, to inquire, summarize and plot the data of a certain monitoring channel during a certain period and export to an external file. In addition, the warning event can be inquired separately. The website for historical and real-time data inquiry and plotting is coded with PHP. (authors)

  6. Image analysis software for following progression of peripheral neuropathy

    Science.gov (United States)

    Epplin-Zapf, Thomas; Miller, Clayton; Larkin, Sean; Hermesmeyer, Eduardo; Macy, Jenny; Pellegrini, Marco; Luccarelli, Saverio; Staurenghi, Giovanni; Holmes, Timothy

    2009-02-01

    A relationship has been reported by several research groups [1 - 4] between the density and shapes of nerve fibers in the cornea and the existence and severity of peripheral neuropathy. Peripheral neuropathy is a complication of several prevalent diseases or conditions, which include diabetes, HIV, prolonged alcohol overconsumption and aging. A common clinical technique for confirming the condition is intramuscular electromyography (EMG), which is invasive, so a noninvasive technique like the one proposed here carries important potential advantages for the physician and patient. A software program that automatically detects the nerve fibers, counts them and measures their shapes is being developed and tested. Tests were carried out with a database of subjects with levels of severity of diabetic neuropathy as determined by EMG testing. Results from this testing, that include a linear regression analysis are shown.

  7. PROTEINCHALLENGE: Crowd sourcing in proteomics analysis and software development

    DEFF Research Database (Denmark)

    Martin, Sarah F.; Falkenberg, Heiner; Dyrlund, Thomas Franck

    2013-01-01

    , including arguments for community-wide open source software development and “big data” compatible solutions for the future. For the meantime, we have laid out ten top tips for data processing. With these at hand, a first large-scale proteomics analysis hopefully becomes less daunting to navigate......, with the aim of setting a community-driven gold standard for data handling, reporting and sharing. This article is part of a Special Issue entitled: New Horizons and Applications for Proteomics [EuPA 2012].......In large-scale proteomics studies there is a temptation, after months of experimental work, to plug resulting data into a convenient—if poorly implemented—set of tools, which may neither do the data justice nor help answer the scientific question. In this paper we have captured key concerns...

  8. Development of Spectrometer Software for Electromagnetic Radiation Measurement and Analysis

    International Nuclear Information System (INIS)

    Mohd Idris Taib; Noor Ezati Shuib; Wan Saffiey Wan Abdullah

    2013-01-01

    This software was under development using LabVIEW to be using with StellarNet Spectrometer system. StellarNet Spectrometer was supplied with SpectraWiz operating software that can measure spectral data for real-time spectroscopy. This LabVIEW software was used to access real-time data from SpectraWiz dynamic link library as hardware interfacing. This software will acquire amplitude of every electromagnetic wavelength at periodic time. In addition to hardware interfacing, the user interface capabilities of software include plotting of spectral data in various mode including scope, absorbance, transmission and irradiance mode. This software surely can be used for research and development in application, utilization and safety of electromagnetic radiation, especially solar, laser and ultra violet. Of-line capabilities of this software are almost unlimited due to availability of mathematical and signal processing function in the LabVIEW add on library. (author)

  9. Fault tree synthesis for software design analysis of PLC based safety-critical systems

    International Nuclear Information System (INIS)

    Koo, S. R.; Cho, C. H.; Seong, P. H.

    2006-01-01

    As a software verification and validation should be performed for the development of PLC based safety-critical systems, a software safety analysis is also considered in line with entire software life cycle. In this paper, we propose a technique of software safety analysis in the design phase. Among various software hazard analysis techniques, fault tree analysis is most widely used for the safety analysis of nuclear power plant systems. Fault tree analysis also has the most intuitive notation and makes both qualitative and quantitative analyses possible. To analyze the design phase more effectively, we propose a technique of fault tree synthesis, along with a universal fault tree template for the architecture modules of nuclear software. Consequently, we can analyze the safety of software on the basis of fault tree synthesis. (authors)

  10. Analysis of Software Development Methodologies to Build Safety Software Applications for the SATEX-II: A Mexican Experimental Satellite

    Science.gov (United States)

    Aguilar Cisneros, Jorge; Vargas Martinez, Hector; Pedroza Melendez, Alejandro; Alonso Arevalo, Miguel

    2013-09-01

    Mexico is a country where the experience to build software for satellite applications is beginning. This is a delicate situation because in the near future we will need to develop software for the SATEX-II (Mexican Experimental Satellite). SATEX- II is a SOMECyTA's project (the Mexican Society of Aerospace Science and Technology). We have experienced applying software development methodologies, like TSP (Team Software Process) and SCRUM in other areas. Then, we analyzed these methodologies and we concluded: these can be applied to develop software for the SATEX-II, also, we supported these methodologies with SSP-05-0 Standard in particular with ESA PSS-05-11. Our analysis was focusing on main characteristics of each methodology and how these methodologies could be used with the ESA PSS 05-0 Standards. Our outcomes, in general, may be used by teams who need to build small satellites, but, in particular, these are going to be used when we will build the on board software applications for the SATEX-II.

  11. Software hazard analysis for nuclear digital protection system by Colored Petri Net

    International Nuclear Information System (INIS)

    Bai, Tao; Chen, Wei-Hua; Liu, Zhen; Gao, Feng

    2017-01-01

    Highlights: •A dynamic hazard analysis method is proposed for the safety-critical software. •The mechanism relies on Colored Petri Net. •Complex interactions between software and hardware are captured properly. •Common failure mode in software are identified effectively. -- Abstract: The software safety of a nuclear digital protection system is critical for the safety of nuclear power plants as any software defect may result in severe damage. In order to ensure the safety and reliability of safety-critical digital system products and their applications, software hazard analysis is required to be performed during the lifecycle of software development. The dynamic software hazard modeling and analysis method based on Colored Petri Net is proposed and applied to the safety-critical control software of the nuclear digital protection system in this paper. The analysis results show that the proposed method can explain the complex interactions between software and hardware and identify the potential common cause failure in software properly and effectively. Moreover, the method can find the dominant software induced hazard to safety control actions, which aids in increasing software quality.

  12. Economic Consequence Analysis of Disasters: The ECAT Software Tool

    Energy Technology Data Exchange (ETDEWEB)

    Rose, Adam; Prager, Fynn; Chen, Zhenhua; Chatterjee, Samrat; Wei, Dan; Heatwole, Nathaniel; Warren, Eric

    2017-04-15

    This study develops a methodology for rapidly obtaining approximate estimates of the economic consequences from numerous natural, man-made and technological threats. This software tool is intended for use by various decision makers and analysts to obtain estimates rapidly. It is programmed in Excel and Visual Basic for Applications (VBA) to facilitate its use. This tool is called E-CAT (Economic Consequence Analysis Tool) and accounts for the cumulative direct and indirect impacts (including resilience and behavioral factors that significantly affect base estimates) on the U.S. economy. E-CAT is intended to be a major step toward advancing the current state of economic consequence analysis (ECA) and also contributing to and developing interest in further research into complex but rapid turnaround approaches. The essence of the methodology involves running numerous simulations in a computable general equilibrium (CGE) model for each threat, yielding synthetic data for the estimation of a single regression equation based on the identification of key explanatory variables (threat characteristics and background conditions). This transforms the results of a complex model, which is beyond the reach of most users, into a "reduced form" model that is readily comprehensible. Functionality has been built into E-CAT so that its users can switch various consequence categories on and off in order to create customized profiles of economic consequences of numerous risk events. E-CAT incorporates uncertainty on both the input and output side in the course of the analysis.

  13. A Video Analysis of Intra- and Interprofessional Leadership Behaviors Within "The Burns Suite": Identifying Key Leadership Models.

    Science.gov (United States)

    Sadideen, Hazim; Weldon, Sharon-Marie; Saadeddin, Munir; Loon, Mark; Kneebone, Roger

    2016-01-01

    Leadership is particularly important in complex highly interprofessional health care contexts involving a number of staff, some from the same specialty (intraprofessional), and others from different specialties (interprofessional). The authors recently published the concept of "The Burns Suite" (TBS) as a novel simulation tool to deliver interprofessional and teamwork training. It is unclear which leadership behaviors are the most important in an interprofessional burns resuscitation scenario, and whether they can be modeled on to current leadership theory. The purpose of this study was to perform a comprehensive video analysis of leadership behaviors within TBS. A total of 3 burns resuscitation simulations within TBS were recorded. The video analysis was grounded-theory inspired. Using predefined criteria, actions/interactions deemed as leadership behaviors were identified. Using an inductive iterative process, 8 main leadership behaviors were identified. Cohen's κ coefficient was used to measure inter-rater agreement and calculated as κ = 0.7 (substantial agreement). Each video was watched 4 times, focusing on 1 of the 4 team members per viewing (senior surgeon, senior nurse, trainee surgeon, and trainee nurse). The frequency and types of leadership behavior of each of the 4 team members were recorded. Statistical significance to assess any differences was assessed using analysis of variance, whereby a p Leadership behaviors were triangulated with verbal cues and actions from the videos. All 3 scenarios were successfully completed. The mean scenario length was 22 minutes. A total of 362 leadership behaviors were recorded from the 12 participants. The most evident leadership behaviors of all team members were adhering to guidelines (which effectively equates to following Advanced Trauma and Life Support/Emergency Management of Severe Burns resuscitation guidelines and hence "maintaining standards"), followed by making decisions. Although in terms of total

  14. Software use cases to elicit the software requirements analysis within the ASTRI project

    Science.gov (United States)

    Conforti, Vito; Antolini, Elisa; Bonnoli, Giacomo; Bruno, Pietro; Bulgarelli, Andrea; Capalbi, Milvia; Fioretti, Valentina; Fugazza, Dino; Gardiol, Daniele; Grillo, Alessandro; Leto, Giuseppe; Lombardi, Saverio; Lucarelli, Fabrizio; Maccarone, Maria Concetta; Malaguti, Giuseppe; Pareschi, Giovanni; Russo, Federico; Sangiorgi, Pierluca; Schwarz, Joseph; Scuderi, Salvatore; Tanci, Claudio; Tosti, Gino; Trifoglio, Massimo; Vercellone, Stefano; Zanmar Sanchez, Ricardo

    2016-07-01

    The Italian National Institute for Astrophysics (INAF) is leading the Astrofisica con Specchi a Tecnologia Replicante Italiana (ASTRI) project whose main purpose is the realization of small size telescopes (SST) for the Cherenkov Telescope Array (CTA). The first goal of the ASTRI project has been the development and operation of an innovative end-to-end telescope prototype using a dual-mirror optical configuration (SST-2M) equipped with a camera based on silicon photo-multipliers and very fast read-out electronics. The ASTRI SST-2M prototype has been installed in Italy at the INAF "M.G. Fracastoro" Astronomical Station located at Serra La Nave, on Mount Etna, Sicily. This prototype will be used to test several mechanical, optical, control hardware and software solutions which will be used in the ASTRI mini-array, comprising nine telescopes proposed to be placed at the CTA southern site. The ASTRI mini-array is a collaborative and international effort led by INAF and carried out by Italy, Brazil and South-Africa. We present here the use cases, through UML (Unified Modeling Language) diagrams and text details, that describe the functional requirements of the software that will manage the ASTRI SST-2M prototype, and the lessons learned thanks to these activities. We intend to adopt the same approach for the Mini Array Software System that will manage the ASTRI miniarray operations. Use cases are of importance for the whole software life cycle; in particular they provide valuable support to the validation and verification activities. Following the iterative development approach, which breaks down the software development into smaller chunks, we have analysed the requirements, developed, and then tested the code in repeated cycles. The use case technique allowed us to formalize the problem through user stories that describe how the user procedurally interacts with the software system. Through the use cases we improved the communication among team members, fostered

  15. Software requirements definition Shipping Cask Analysis System (SCANS)

    International Nuclear Information System (INIS)

    Johnson, G.L.; Serbin, R.

    1985-01-01

    The US Nuclear Regulatory Commission (NRC) staff reviews the technical adequacy of applications for certification of designs of shipping casks for spent nuclear fuel. In order to confirm an acceptable design, the NRC staff may perform independent calculations. The current NRC procedure for confirming cask design analyses is laborious and tedious. Most of the work is currently done by hand or through the use of a remote computer network. The time required to certify a cask can be long. The review process may vary somewhat with the engineer doing the reviewing. Similarly, the documentation on the results of the review can also vary with the reviewer. To increase the efficiency of this certification process, LLNL was requested to design and write an integrated set of user-oriented, interactive computer programs for a personal microcomputer. The system is known as the NRC Shipping Cask Analysis System (SCANS). The computer codes and the software system supporting these codes are being developed and maintained for the NRC by LLNL. The objective of this system is generally to lessen the time and effort needed to review an application. Additionally, an objective of the system is to assure standardized methods and documentation of the confirmatory analyses used in the review of these cask designs. A software system should be designed based on NRC-defined requirements contained in a requirements document. The requirements document is a statement of a project's wants and needs as the users and implementers jointly understand them. The requirements document states the desired end products (i.e. WHAT's) of the project, not HOW the project provides them. This document describes the wants and needs for the SCANS system. 1 fig., 3 tabs

  16. Study of gamma ray analysis software's. Application to activation analysis of geological samples

    International Nuclear Information System (INIS)

    Silva, Luiz Roberto Nogueira da

    1998-01-01

    A comparative evaluation of the gamma-ray analysis software VISPECT, in relation to two commercial gamma-ray analysis software packages, OMNIGAM (EG and G Ortec) and SAMPO 90 (Canberra) was performed. For this evaluation, artificial gamma ray spectra were created, presenting peaks of different intensities and located at four different regions of the spectrum. Multiplet peaks with equal and different intensities, but with different channel separations, were also created. The results obtained showed a good performance of VISPECT in detecting and analysing single and multiplet peaks of different intensities in the gamma-ray spectrum. Neutron activation analysis of the geological reference material GS-N (IWG-GIT) and of the granite G-94, used in a Proficiency Testing Trial of Analytical Geochemistry Laboratories, was also performed , in order to evaluate the VISEPCT software in the analysis of real samples. The results obtained by using VISPECT were as good or better than the ones obtained using the other programs. (author)

  17. The Software Therapist: Usability Problem Diagnosis Through Latent Semantic Analysis

    National Research Council Canada - National Science Library

    Sparks, Randall; Hartson, Rex

    2006-01-01

    The work we report on here addresses the problem of low return on investment in software usability engineering and offers support for usability practitioners in identifying, understanding, documenting...

  18. Analysis of student’s scientific attitude behaviour change effects blended learning supported by I-spring Suite 8 application

    Science.gov (United States)

    Budiharti, Rini; Waras, N. S.

    2018-05-01

    This article aims to describe the student’s scientific attitude behaviour change as treatment effect of Blended Learning supported by I-Spring Suite 8 application on the material balance and the rotational dynamics. Blended Learning models is learning strategy that integrate between face-to-face learning and online learning by combination of various media. Blended Learning model supported I-Spring Suite 8 media setting can direct learning becomes interactive. Students are guided to actively interact with the media as well as with other students to discuss getting the concept by the phenomena or facts presented. The scientific attitude is a natural attitude of students in the learning process. In interactive learning, scientific attitude is so needed. The research was conducted using a model Lesson Study which consists of the stages Plan-Do-Check-Act (PDCA) and applied to the subject of learning is students at class XI MIPA 2 of Senior High School 6 Surakarta. The validity of the data used triangulation techniques of observation, interviews and document review. Based on the discussion, it can be concluded that the use of Blended Learning supported media I-Spring Suite 8 is able to give the effect of changes in student behaviour on all dimensions of scientific attitude that is inquisitive, respect the data or fact, critical thinking, discovery and creativity, open minded and cooperation, and perseverance. Display e-learning media supported student worksheet makes the students enthusiastically started earlier, the core until the end of learning

  19. Space Suit Joint Torque Testing

    Science.gov (United States)

    Valish, Dana J.

    2011-01-01

    In 2009 and early 2010, a test was performed to quantify the torque required to manipulate joints in several existing operational and prototype space suits in an effort to develop joint torque requirements appropriate for a new Constellation Program space suit system. The same test method was levied on the Constellation space suit contractors to verify that their suit design meets the requirements. However, because the original test was set up and conducted by a single test operator there was some question as to whether this method was repeatable enough to be considered a standard verification method for Constellation or other future space suits. In order to validate the method itself, a representative subset of the previous test was repeated, using the same information that would be available to space suit contractors, but set up and conducted by someone not familiar with the previous test. The resultant data was compared using graphical and statistical analysis and a variance in torque values for some of the tested joints was apparent. Potential variables that could have affected the data were identified and re-testing was conducted in an attempt to eliminate these variables. The results of the retest will be used to determine if further testing and modification is necessary before the method can be validated.

  20. HistFitter software framework for statistical data analysis

    Energy Technology Data Exchange (ETDEWEB)

    Baak, M. [CERN, Geneva (Switzerland); Besjes, G.J. [Radboud University Nijmegen, Nijmegen (Netherlands); Nikhef, Amsterdam (Netherlands); Cote, D. [University of Texas, Arlington (United States); Koutsman, A. [TRIUMF, Vancouver (Canada); Lorenz, J. [Ludwig-Maximilians-Universitaet Muenchen, Munich (Germany); Excellence Cluster Universe, Garching (Germany); Short, D. [University of Oxford, Oxford (United Kingdom)

    2015-04-15

    We present a software framework for statistical data analysis, called HistFitter, that has been used extensively by the ATLAS Collaboration to analyze big datasets originating from proton-proton collisions at the Large Hadron Collider at CERN. Since 2012 HistFitter has been the standard statistical tool in searches for supersymmetric particles performed by ATLAS. HistFitter is a programmable and flexible framework to build, book-keep, fit, interpret and present results of data models of nearly arbitrary complexity. Starting from an object-oriented configuration, defined by users, the framework builds probability density functions that are automatically fit to data and interpreted with statistical tests. Internally HistFitter uses the statistics packages RooStats and HistFactory. A key innovation of HistFitter is its design, which is rooted in analysis strategies of particle physics. The concepts of control, signal and validation regions are woven into its fabric. These are progressively treated with statistically rigorous built-in methods. Being capable of working with multiple models at once that describe the data, HistFitter introduces an additional level of abstraction that allows for easy bookkeeping, manipulation and testing of large collections of signal hypotheses. Finally, HistFitter provides a collection of tools to present results with publication quality style through a simple command-line interface. (orig.)

  1. Development and applications of Kramers-Kronig PEELS analysis software

    International Nuclear Information System (INIS)

    Fan, X. D.; Peng, J.L.; Bursill, L.A.

    1997-01-01

    A Kramers-Kronig analysis program is developed as a custom function for the GATAN parallel electron energy loss spectroscopy (PEELS) software package EL/P. When used with a JEOL 4000EX high-resolution transmission electron microscope this program allows to measure the dielectric functions of materials with an energy resolution of approx 1.4eV. The imaginary part of the dielectric function is particularly useful, since it allows the magnitude of the band gap to be determined for relatively wide-gap materials. More importantly, changes in the gap may be monitored at high spatial resolution, when used in conjunction with the HRTEM images. The principles of the method are described and applications are presented for Type-1a gem quality diamond, before and after neutron irradiation. The former shows a band gap of about 5.8 eV, as expected, whereas for the latter the gap appears to be effectively collapsed. The core-loss spectra confirm that Type-1a diamond has pure sp 3 tetrahedral bonding, whereas the neutron irradiated diamond has mixed sp 2 /sp 3 bonding. Analysis of the low-loss spectra for the neutron-irradiated specimen yielded density 1.6 g/cm 3 , approximately half that of diamond. 10 refs., 2 figs

  2. HistFitter software framework for statistical data analysis

    International Nuclear Information System (INIS)

    Baak, M.; Besjes, G.J.; Cote, D.; Koutsman, A.; Lorenz, J.; Short, D.

    2015-01-01

    We present a software framework for statistical data analysis, called HistFitter, that has been used extensively by the ATLAS Collaboration to analyze big datasets originating from proton-proton collisions at the Large Hadron Collider at CERN. Since 2012 HistFitter has been the standard statistical tool in searches for supersymmetric particles performed by ATLAS. HistFitter is a programmable and flexible framework to build, book-keep, fit, interpret and present results of data models of nearly arbitrary complexity. Starting from an object-oriented configuration, defined by users, the framework builds probability density functions that are automatically fit to data and interpreted with statistical tests. Internally HistFitter uses the statistics packages RooStats and HistFactory. A key innovation of HistFitter is its design, which is rooted in analysis strategies of particle physics. The concepts of control, signal and validation regions are woven into its fabric. These are progressively treated with statistically rigorous built-in methods. Being capable of working with multiple models at once that describe the data, HistFitter introduces an additional level of abstraction that allows for easy bookkeeping, manipulation and testing of large collections of signal hypotheses. Finally, HistFitter provides a collection of tools to present results with publication quality style through a simple command-line interface. (orig.)

  3. RVA. 3-D Visualization and Analysis Software to Support Management of Oil and Gas Resources

    Energy Technology Data Exchange (ETDEWEB)

    Keefer, Donald A. [Univ. of Illinois, Champaign, IL (United States); Shaffer, Eric G. [Univ. of Illinois, Champaign, IL (United States); Storsved, Brynne [Univ. of Illinois, Champaign, IL (United States); Vanmoer, Mark [Univ. of Illinois, Champaign, IL (United States); Angrave, Lawrence [Univ. of Illinois, Champaign, IL (United States); Damico, James R. [Univ. of Illinois, Champaign, IL (United States); Grigsby, Nathan [Univ. of Illinois, Champaign, IL (United States)

    2015-12-01

    A free software application, RVA, has been developed as a plugin to the US DOE-funded ParaView visualization package, to provide support in the visualization and analysis of complex reservoirs being managed using multi-fluid EOR techniques. RVA, for Reservoir Visualization and Analysis, was developed as an open-source plugin to the 64 bit Windows version of ParaView 3.14. RVA was developed at the University of Illinois at Urbana-Champaign, with contributions from the Illinois State Geological Survey, Department of Computer Science and National Center for Supercomputing Applications. RVA was designed to utilize and enhance the state-of-the-art visualization capabilities within ParaView, readily allowing joint visualization of geologic framework and reservoir fluid simulation model results. Particular emphasis was placed on enabling visualization and analysis of simulation results highlighting multiple fluid phases, multiple properties for each fluid phase (including flow lines), multiple geologic models and multiple time steps. Additional advanced functionality was provided through the development of custom code to implement data mining capabilities. The built-in functionality of ParaView provides the capacity to process and visualize data sets ranging from small models on local desktop systems to extremely large models created and stored on remote supercomputers. The RVA plugin that we developed and the associated User Manual provide improved functionality through new software tools, and instruction in the use of ParaView-RVA, targeted to petroleum engineers and geologists in industry and research. The RVA web site (http://rva.cs.illinois.edu) provides an overview of functions, and the development web site (https://github.com/shaffer1/RVA) provides ready access to the source code, compiled binaries, user manual, and a suite of demonstration data sets. Key functionality has been included to support a range of reservoirs visualization and analysis needs, including

  4. An analysis software of tritium distribution in food and environmental water in China

    International Nuclear Information System (INIS)

    Li Wenhong; Xu Cuihua; Ren Tianshan; Deng Guilong

    2006-01-01

    Objective: The purpose of developing this analysis-software of tritium distribution in food and environmental water is to collect tritium monitoring data, to analyze the data, both automatically, statistically and graphically, and to study and share the data. Methods: Based on the data obtained before, analysis-software is wrote by using VC++. NET as tool software. The software first transfers data from EXCEL into a database. It has additive function of data-append, so operators can embody new monitoring data easily. Results: After turning the monitoring data saved as EXCEL file by original researchers into a database, people can easily access them. The software provides a tool of distributing-analysis of tritium. Conclusion: This software is a first attempt of data-analysis about tritium level in food and environmental water in China. Data achieving, searching and analyzing become easily and directly with the software. (authors)

  5. Software selection based on analysis and forecasting methods, practised in 1C

    Science.gov (United States)

    Vazhdaev, A. N.; Chernysheva, T. Y.; Lisacheva, E. I.

    2015-09-01

    The research focuses on the problem of a “1C: Enterprise 8” platform inboard mechanisms for data analysis and forecasting. It is important to evaluate and select proper software to develop effective strategies for customer relationship management in terms of sales, as well as implementation and further maintenance of software. Research data allows creating new forecast models to schedule further software distribution.

  6. Spacelab user implementation assessment study. (Software requirements analysis). Volume 2: Technical report

    Science.gov (United States)

    1976-01-01

    The engineering analyses and evaluation studies conducted for the Software Requirements Analysis are discussed. Included are the development of the study data base, synthesis of implementation approaches for software required by both mandatory onboard computer services and command/control functions, and identification and implementation of software for ground processing activities.

  7. Instant Spring Tool Suite

    CERN Document Server

    Chiang, Geoff

    2013-01-01

    Filled with practical, step-by-step instructions and clear explanations for the most important and useful tasks. A tutorial guide that walks you through how to use the features of Spring Tool Suite using well defined sections for the different parts of Spring.Instant Spring Tool Suite is for novice to intermediate Java developers looking to get a head-start in enterprise application development using Spring Tool Suite and the Spring framework. If you are looking for a guide for effective application development using Spring Tool Suite, then this book is for you.

  8. AGSuite: Software to conduct feature analysis of artificial grammar learning performance.

    Science.gov (United States)

    Cook, Matthew T; Chubala, Chrissy M; Jamieson, Randall K

    2017-10-01

    To simplify the problem of studying how people learn natural language, researchers use the artificial grammar learning (AGL) task. In this task, participants study letter strings constructed according to the rules of an artificial grammar and subsequently attempt to discriminate grammatical from ungrammatical test strings. Although the data from these experiments are usually analyzed by comparing the mean discrimination performance between experimental conditions, this practice discards information about the individual items and participants that could otherwise help uncover the particular features of strings associated with grammaticality judgments. However, feature analysis is tedious to compute, often complicated, and ill-defined in the literature. Moreover, the data violate the assumption of independence underlying standard linear regression models, leading to Type I error inflation. To solve these problems, we present AGSuite, a free Shiny application for researchers studying AGL. The suite's intuitive Web-based user interface allows researchers to generate strings from a database of published grammars, compute feature measures (e.g., Levenshtein distance) for each letter string, and conduct a feature analysis on the strings using linear mixed effects (LME) analyses. The LME analysis solves the inflation of Type I errors that afflicts more common methods of repeated measures regression analysis. Finally, the software can generate a number of graphical representations of the data to support an accurate interpretation of results. We hope the ease and availability of these tools will encourage researchers to take full advantage of item-level variance in their datasets in the study of AGL. We moreover discuss the broader applicability of the tools for researchers looking to conduct feature analysis in any field.

  9. Empirical analysis of change metrics for software fault prediction

    NARCIS (Netherlands)

    Choudhary, Garvit Rajesh; Kumar, Sandeep; Kumar, Kuldeep; Mishra, Alok; Catal, Cagatay

    2018-01-01

    A quality assurance activity, known as software fault prediction, can reduce development costs and improve software quality. The objective of this study is to investigate change metrics in conjunction with code metrics to improve the performance of fault prediction models. Experimental studies are

  10. An Analysis of Open Source Security Software Products Downloads

    Science.gov (United States)

    Barta, Brian J.

    2014-01-01

    Despite the continued demand for open source security software, a gap in the identification of success factors related to the success of open source security software persists. There are no studies that accurately assess the extent of this persistent gap, particularly with respect to the strength of the relationships of open source software…

  11. Multi-criteria decision analysis methods and software

    CERN Document Server

    Ishizaka, Alessio

    2013-01-01

    This book presents an introduction to MCDA followed by more detailed chapters about each of the leading methods used in this field. Comparison of methods and software is also featured to enable readers to choose the most appropriate method needed in their research. Worked examples as well as the software featured in the book are available on an accompanying website.

  12. A pattern framework for software quality assessment and tradeoff analysis

    NARCIS (Netherlands)

    Folmer, Eelke; Boscht, Jan

    The earliest design decisions often have a significant impact on software quality and are the most costly to revoke. One of the challenges in architecture design is to reduce the frequency of retrofit problems in software designs; not being able to improve the quality of a system cost effectively, a

  13. Software para análise quantitativa da deglutição Swallowing quantitative analysis software

    Directory of Open Access Journals (Sweden)

    André Augusto Spadotto

    2008-02-01

    Full Text Available OBJETIVO: Apresentar um software que permita uma análise detalhada da dinâmica da deglutição. MATERIAIS E MÉTODOS: Participaram deste estudo dez indivíduos após acidente vascular encefálico, sendo seis do gênero masculino, com idade média de 57,6 anos. Foi realizada videofluoroscopia da deglutição e as imagens foram digitalizadas em microcomputador, com posterior análise do tempo do trânsito faríngeo da deglutição, por meio de um cronômetro e do software. RESULTADOS: O tempo médio do trânsito faríngeo da deglutição apresentou-se diferente quando comparados os métodos utilizados (cronômetro e software. CONCLUSÃO: Este software é um instrumento de análise dos parâmetros tempo e velocidade da deglutição, propiciando melhor compreensão da dinâmica da deglutição, com reflexos tanto na abordagem clínica dos pacientes com disfagia como para fins de pesquisa científica.OBJECTIVE: The present paper is aimed at introducing a software to allow a detailed analysis of the swallowing dynamics. MATERIALS AND METHODS: The sample included ten (six male and four female stroke patients, with mean age of 57.6 years. Swallowing videofluoroscopy was performed and images were digitized for posterior analysis of the pharyngeal transit time with the aid of a chronometer and the software. RESULTS: Differences were observed in the average pharyngeal swallowing transit time as a result of measurements with chronometer and software. CONCLUSION: This software is a useful tool for the analysis of parameters such as swallowing time and speed, allowing a better understanding of the swallowing dynamics, both in the clinical approach of patients with oropharyngeal dysphagia and for scientific research purposes.

  14. A Flexible Method for Producing F.E.M. Analysis of Bone Using Open-Source Software

    Science.gov (United States)

    Boppana, Abhishektha; Sefcik, Ryan; Meyers, Jerry G.; Lewandowski, Beth E.

    2016-01-01

    This project, performed in support of the NASA GRC Space Academy summer program, sought to develop an open-source workflow methodology that segmented medical image data, created a 3D model from the segmented data, and prepared the model for finite-element analysis. In an initial step, a technological survey evaluated the performance of various existing open-source software that claim to perform these tasks. However, the survey concluded that no single software exhibited the wide array of functionality required for the potential NASA application in the area of bone, muscle and bio fluidic studies. As a result, development of a series of Python scripts provided the bridging mechanism to address the shortcomings of the available open source tools. The implementation of the VTK library provided the most quick and effective means of segmenting regions of interest from the medical images; it allowed for the export of a 3D model by using the marching cubes algorithm to build a surface mesh. To facilitate the development of the model domain from this extracted information required a surface mesh to be processed in the open-source software packages Blender and Gmsh. The Preview program of the FEBio suite proved to be sufficient for volume filling the model with an unstructured mesh and preparing boundaries specifications for finite element analysis. To fully allow FEM modeling, an in house developed Python script allowed assignment of material properties on an element by element basis by performing a weighted interpolation of voxel intensity of the parent medical image correlated to published information of image intensity to material properties, such as ash density. A graphical user interface combined the Python scripts and other software into a user friendly interface. The work using Python scripts provides a potential alternative to expensive commercial software and inadequate, limited open-source freeware programs for the creation of 3D computational models. More work

  15. RNAstructure: software for RNA secondary structure prediction and analysis.

    Science.gov (United States)

    Reuter, Jessica S; Mathews, David H

    2010-03-15

    To understand an RNA sequence's mechanism of action, the structure must be known. Furthermore, target RNA structure is an important consideration in the design of small interfering RNAs and antisense DNA oligonucleotides. RNA secondary structure prediction, using thermodynamics, can be used to develop hypotheses about the structure of an RNA sequence. RNAstructure is a software package for RNA secondary structure prediction and analysis. It uses thermodynamics and utilizes the most recent set of nearest neighbor parameters from the Turner group. It includes methods for secondary structure prediction (using several algorithms), prediction of base pair probabilities, bimolecular structure prediction, and prediction of a structure common to two sequences. This contribution describes new extensions to the package, including a library of C++ classes for incorporation into other programs, a user-friendly graphical user interface written in JAVA, and new Unix-style text interfaces. The original graphical user interface for Microsoft Windows is still maintained. The extensions to RNAstructure serve to make RNA secondary structure prediction user-friendly. The package is available for download from the Mathews lab homepage at http://rna.urmc.rochester.edu/RNAstructure.html.

  16. Design aspects of the Alpha Repository. V. Suite selection and cost analysis of excavation/hauling systems

    International Nuclear Information System (INIS)

    Zeller, T.J.; Grams, W.H.

    1975-01-01

    The various types of haulage and excavation equipment that may be suitable for use in the development and excavation of the Alpha repository are described with discussion of the advantages, disadvantages, expected costs, availability, and special features of each. The various equipment suites are delineated, and the costs of mining and transportation of the salt are presented and discussed. Individual manufacturers contacted and equipment considered are listed. Most of the equipment is ''off-the-shelf''; however, some manufactuers were contacted that do custom work because of their expertise in salt mining equipment. The costs of custom equipment are comparable to those for standard equipment

  17. Analysis on Influential Functions in the Weighted Software Network

    Directory of Open Access Journals (Sweden)

    Haitao He

    2018-01-01

    Full Text Available Identifying influential nodes is important for software in terms of understanding the design patterns and controlling the development and the maintenance process. However, there are no efficient methods to discover them so far. Based on the invoking dependency relationships between the nodes, this paper proposes a novel approach to define the node importance for mining the influential software nodes. First, according to the multiple execution information, we construct a weighted software network (WSN to denote the software execution dependency structure. Second, considering the invoking times and outdegree about software nodes, we improve the method PageRank and put forward the targeted algorithm FunctionRank to evaluate the node importance (NI in weighted software network. It has higher influence when the node has lager value of NI. Finally, comparing the NI of nodes, we can obtain the most influential nodes in the software network. In addition, the experimental results show that the proposed approach has good performance in identifying the influential nodes.

  18. Validation suite for MCNP

    International Nuclear Information System (INIS)

    Mosteller, Russell D.

    2002-01-01

    Two validation suites, one for criticality and another for radiation shielding, have been defined and tested for the MCNP Monte Carlo code. All of the cases in the validation suites are based on experiments so that calculated and measured results can be compared in a meaningful way. The cases in the validation suites are described, and results from those cases are discussed. For several years, the distribution package for the MCNP Monte Carlo code1 has included an installation test suite to verify that MCNP has been installed correctly. However, the cases in that suite have been constructed primarily to test options within the code and to execute quickly. Consequently, they do not produce well-converged answers, and many of them are physically unrealistic. To remedy these deficiencies, sets of validation suites are being defined and tested for specific types of applications. All of the cases in the validation suites are based on benchmark experiments. Consequently, the results from the measurements are reliable and quantifiable, and calculated results can be compared with them in a meaningful way. Currently, validation suites exist for criticality and radiation-shielding applications.

  19. Pharmacy settles suit.

    Science.gov (United States)

    1998-10-02

    A suit was filed by an HIV-positive man against a pharmacy that inadvertently disclosed his HIV status to his ex-wife and children. His ex-wife tried to use the information in a custody battle for their two children. The suit against the pharmacy was settled, but the terms of the settlement remain confidential.

  20. Comparative analysis of results between CASMO, MCNP and Serpent for a suite of Benchmark problems on BWR reactors; Analisis comparativo de resultados entre CASMO, MCNP y SERPENT para una suite de problemas Benchmark en reactores BWR

    Energy Technology Data Exchange (ETDEWEB)

    Xolocostli M, J. V.; Vargas E, S.; Gomez T, A. M. [ININ, Carretera Mexico-Toluca s/n, 52750 Ocoyoacac, Estado de Mexico (Mexico); Reyes F, M. del C.; Del Valle G, E., E-mail: vicente.xolocostli@inin.gob.mx [IPN, Escuela Superior de Fisica y Matematicas, UP - Adolfo Lopez Mateos, Edif. 9, 07738 Mexico D. F. (Mexico)

    2014-10-15

    In this paper a comparison is made in analyzing the suite of Benchmark problems for reactors type BWR between CASMO-4, MCNP6 and Serpent code. The Benchmark problem consists of two different geometries: a fuel cell of a pin and assembly type BWR. To facilitate the study of reactors physics in the fuel pin their nuclear characteristics are provided to detail, such as burnt dependence, the reactivity of selected nuclide, etc. With respect to the fuel assembly, the presented results are regarding to infinite multiplication factor for burning different steps and different vacuum conditions. Making the analysis of this set of Benchmark problems provides comprehensive test problems for the next fuels generation of BWR reactors with high extended burned. It is important to note that when making this comparison the purpose is to validate the methodologies used in modeling for different operating conditions, if the case is of other BWR assembly. The results will be within a range with some uncertainty, considering that does not depend on code that is used. Escuela Superior de Fisica y Matematicas of Instituto Politecnico Nacional (IPN (Mexico) has accumulated some experience in using Serpent, due to the potential of this code over other commercial codes such as CASMO and MCNP. The obtained results for the infinite multiplication factor are encouraging and motivate the studies to continue with the generation of the X S of a core to a next step a respective nuclear data library is constructed and this can be used by codes developed as part of the development project of the Mexican Analysis Platform of Nuclear Reactors AZTLAN. (Author)

  1. Experimental analysis of specification language impact on NPP software diversity

    International Nuclear Information System (INIS)

    Yoo, Chang Sik; Seong, Poong Hyun

    1998-01-01

    When redundancy and diversity is applied in NPP digital computer system, diversification of system software may be a critical point for the entire system dependability. As the means of enhancing software diversity, specification language diversity is suggested in this study. We set up a simple hypothesis for the specification language impact on common errors, and an experiment based on NPP protection system application was performed. Experiment result showed that this hypothesis could be justified and specification language diversity is effective in overcoming software common mode failure problem

  2. Learn by Yourself: The Self-Learning Tools for Qualitative Analysis Software Packages

    Science.gov (United States)

    Freitas, Fábio; Ribeiro, Jaime; Brandão, Catarina; Reis, Luís Paulo; de Souza, Francislê Neri; Costa, António Pedro

    2017-01-01

    Computer Assisted Qualitative Data Analysis Software (CAQDAS) are tools that help researchers to develop qualitative research projects. These software packages help the users with tasks such as transcription analysis, coding and text interpretation, writing and annotation, content search and analysis, recursive abstraction, grounded theory…

  3. Development of the software dead time methodology for the 4πβ-γ software coincidence system analysis program

    International Nuclear Information System (INIS)

    Toledo, Fabio de; Brancaccio, Franco; Dias, Mauro da Silva

    2009-01-01

    The Laboratorio de Metrologia Nuclear - LMN, Nuclear Metrology Laboratory -, at IPEN-CNEN/SP, Sao Paulo, Brazil, developed a new Software Coincidence System (SCS) for 4πβ-γ radioisotope standardization. SCS is composed by the data acquisition hardware, for the coincidence data recording, and the coincidence data analysis program that performs the radioactive activity calculation for the target sample. Due to hardware intrinsic signal sampling characteristics, multiple undesired data recording occurs from a single saturated pulse. Also pulse pileup leads to bad data recording. As the beta counting rates are much greater than the gamma ones, due to the high 4π geometry beta detecting efficiencies, the beta counting significantly increases because of multiple pulse recordings, resulting in a respective increasing in the calculated activity value. In order to minimize such bad recordings effect, a software dead time value was introduced in the coincidence analysis program, under development at LMN, discarding multiple recordings, due to pulse pileup or saturation. This work presents the methodology developed to determine the optimal software dead time data value, for better accuracy results attaining, and discusses the results, pointing to software improvement possibilities. (author)

  4. Software safety analysis on the model specified by NuSCR and SMV input language at requirements phase of software development life cycle using SMV

    International Nuclear Information System (INIS)

    Koh, Kwang Yong; Seong, Poong Hyun

    2005-01-01

    Safety-critical software process is composed of development process, verification and validation (V and V) process and safety analysis process. Safety analysis process has been often treated as an additional process and not found in a conventional software process. But software safety analysis (SSA) is required if software is applied to a safety system, and the SSA shall be performed independently for the safety software through software development life cycle (SDLC). Of all the phases in software development, requirements engineering is generally considered to play the most critical role in determining the overall software quality. NASA data demonstrate that nearly 75% of failures found in operational software were caused by errors in the requirements. The verification process in requirements phase checks the correctness of software requirements specification, and the safety analysis process analyzes the safety-related properties in detail. In this paper, the method for safety analysis at requirements phase of software development life cycle using symbolic model verifier (SMV) is proposed. Hazard is discovered by hazard analysis and in other to use SMV for the safety analysis, the safety-related properties are expressed by computation tree logic (CTL)

  5. BEANS - a software package for distributed Big Data analysis

    Science.gov (United States)

    Hypki, Arkadiusz

    2018-03-01

    BEANS software is a web based, easy to install and maintain, new tool to store and analyse in a distributed way a massive amount of data. It provides a clear interface for querying, filtering, aggregating, and plotting data from an arbitrary number of datasets. Its main purpose is to simplify the process of storing, examining and finding new relations in huge datasets. The software is an answer to a growing need of the astronomical community to have a versatile tool to store, analyse and compare the complex astrophysical numerical simulations with observations (e.g. simulations of the Galaxy or star clusters with the Gaia archive). However, this software was built in a general form and it is ready to use in any other research field. It can be used as a building block for other open source software too.

  6. User-friendly software for SANS data reduction and analysis

    International Nuclear Information System (INIS)

    Biemann, P.; Haese-Seiller, M.; Staron, P.

    1999-01-01

    At the Geesthacht Neutron Facility (GeNF) a new software is being developed for the reduction of two-dimensional small-angle neutron scattering (SANS) data. The main motivation for this work was to created software for users of our SANS facilities that is easy to use. Another motivation was to provide users with software they can also use at their home institute. Therefore, the software is implemented on a personal computer running WINDOWS. The program reads raw data from an area detector in binary or ascii format and produces ascii files containing the scattering curve. The cross section can be averaged over the whole area of the detector or over users defined sectors only. Scripts can be created for processing large numbers of files. (author)

  7. Multi-channel software defined radio experimental evaluation and analysis

    CSIR Research Space (South Africa)

    Van der Merwe, JR

    2014-09-01

    Full Text Available Multi-channel software-defined radios (SDRs) can be utilised as inexpensive prototyping platforms for transceiver arrays. The application for multi-channel prototyping is discussed and measured results of coherent channels for both receiver...

  8. An online database for plant image analysis software tools

    OpenAIRE

    Lobet, Guillaume; Draye, Xavier; Périlleux, Claire

    2013-01-01

    Background: Recent years have seen an increase in methods for plant phenotyping using image analyses. These methods require new software solutions for data extraction and treatment. These solutions are instrumental in supporting various research pipelines, ranging from the localisation of cellular compounds to the quantification of tree canopies. However, due to the variety of existing tools and the lack of central repository, it is challenging for researchers to identify the software that is...

  9. Prototype Software for Automated Structural Analysis of Systems

    DEFF Research Database (Denmark)

    Jørgensen, A.; Izadi-Zamanabadi, Roozbeh; Kristensen, M.

    2004-01-01

    In this paper we present a prototype software tool that is developed to analyse the structural model of automated systems in order to identify redundant information that is hence utilized for Fault detection and Isolation (FDI) purposes. The dedicated algorithms in this software tool use a tri......-partite graph that represents the structural model of the system. A component-based approach has been used to address issues such as system complexity and recon¯gurability possibilities....

  10. Prototype Software for Automated Structural Analysis of Systems

    DEFF Research Database (Denmark)

    Jørgensen, A.; Izadi-Zamanabadi, Roozbeh; Kristensen, M.

    2004-01-01

    In this paper we present a prototype software tool that is developed to analyse the structural model of automated systems in order to identify redundant information that is hence utilized for Fault detection and Isolation (FDI) purposes. The dedicated algorithms in this software tool use a tri......-partite graph that represents the structural model of the system. A component-based approach has been used to address issues such as system complexity and reconfigurability possibilities....

  11. Problem of Office Suite Training at the University

    Directory of Open Access Journals (Sweden)

    Natalia A. Nastashchuk

    2013-01-01

    Full Text Available Te paper considers the problem of office suite applications training, caused by a rapid change of their versions, variety of software developers and a rapid development of software and hardware platforms. The content of office suite applications training, based on the system of office suite notions, its basic functional and standards of information technologies development (OpenDocument Format Standard, ISO 26300-200Х is presented.

  12. Network-based analysis of software change propagation.

    Science.gov (United States)

    Wang, Rongcun; Huang, Rubing; Qu, Binbin

    2014-01-01

    The object-oriented software systems frequently evolve to meet new change requirements. Understanding the characteristics of changes aids testers and system designers to improve the quality of softwares. Identifying important modules becomes a key issue in the process of evolution. In this context, a novel network-based approach is proposed to comprehensively investigate change distributions and the correlation between centrality measures and the scope of change propagation. First, software dependency networks are constructed at class level. And then, the number of times of cochanges among classes is minded from software repositories. According to the dependency relationships and the number of times of cochanges among classes, the scope of change propagation is calculated. Using Spearman rank correlation analyzes the correlation between centrality measures and the scope of change propagation. Three case studies on java open source software projects Findbugs, Hibernate, and Spring are conducted to research the characteristics of change propagation. Experimental results show that (i) change distribution is very uneven; (ii) PageRank, Degree, and CIRank are significantly correlated to the scope of change propagation. Particularly, CIRank shows higher correlation coefficient, which suggests it can be a more useful indicator for measuring the scope of change propagation of classes in object-oriented software system.

  13. Radiation and environmental data analysis computer (REDAC) hardware, software band analysis procedures

    International Nuclear Information System (INIS)

    Hendricks, T.J.

    1985-01-01

    The REDAC was conceived originally as a tape verifier for the Radiation and Environmental Data Acquisition Recorder (REDAR). From that simple beginning in 1971, the REDAC has evolved into a family of systems used for complete analysis of data obtained by the REDAR and other acquisition systems. Portable or mobile REDACs are deployed to support checkout and analysis tasks in the field. Laboratory systems are additionally used for software development, physics investigations, data base management and graphics. System configurations range from man-portable systems to a large laboratory-based system which supports time-shared analysis and development tasks. Custom operating software allows the analyst to process data either interactively or by batch procedures. Analysis packages are provided for numerous necessary functions. All these analysis procedures can be performed even on the smallest man-portable REDAC. Examples of the multi-isotope stripping and radiation isopleth mapping are presented. Techniques utilized for these operations are also presented

  14. Inequalities in Open Source Software Development: Analysis of Contributor's Commits in Apache Software Foundation Projects.

    Science.gov (United States)

    Chełkowski, Tadeusz; Gloor, Peter; Jemielniak, Dariusz

    2016-01-01

    While researchers are becoming increasingly interested in studying OSS phenomenon, there is still a small number of studies analyzing larger samples of projects investigating the structure of activities among OSS developers. The significant amount of information that has been gathered in the publicly available open-source software repositories and mailing-list archives offers an opportunity to analyze projects structures and participant involvement. In this article, using on commits data from 263 Apache projects repositories (nearly all), we show that although OSS development is often described as collaborative, but it in fact predominantly relies on radically solitary input and individual, non-collaborative contributions. We also show, in the first published study of this magnitude, that the engagement of contributors is based on a power-law distribution.

  15. Accident Damage Analysis Module (ADAM) – Technical Guidance, Software tool for Consequence Analysis calculations

    OpenAIRE

    FABBRI LUCIANO; BINDA MASSIMO; BRUINEN DE BRUIN YURI

    2017-01-01

    This report provides a technical description of the modelling and assumptions of the Accident Damage Analysis Module (ADAM) software application, which has been recently developed by the Joint Research Centre (JRC) of the European Commission (EC) to assess physical effects of an industrial accident resulting from an unintended release of a dangerous substance

  16. Evaluation of Distribution Analysis Software for DER Applications

    Energy Technology Data Exchange (ETDEWEB)

    Staunton, RH

    2003-01-23

    unstoppable. In response, energy providers will be forced to both fully acknowledge the trend and plan for accommodating DER [3]. With bureaucratic barriers [4], lack of time/resources, tariffs, etc. still seen in certain regions of the country, changes still need to be made. Given continued technical advances in DER, the time is fast approaching when the industry, nation-wide, must not only accept DER freely but also provide or review in-depth technical assessments of how DER should be integrated into and managed throughout the distribution system. Characterization studies are needed to fully understand how both the utility system and DER devices themselves will respond to all reasonable events (e.g., grid disturbances, faults, rapid growth, diverse and multiple DER systems, large reactive loads). Some of this work has already begun as it relates to operation and control of DER [5] and microturbine performance characterization [6,7]. One of the most urgently needed tools that can provide these types of analyses is a distribution network analysis program in combination with models for various DER. Together, they can be used for (1) analyzing DER placement in distribution networks and (2) helping to ensure that adequate transmission reliability is maintained. Surveys of the market show products that represent a partial match to these needs; specifically, software that has been developed to plan electrical distribution systems and analyze reliability (in a near total absence of DER). The first part of this study (Sections 2 and 3 of the report) looks at a number of these software programs and provides both summary descriptions and comparisons. The second part of this study (Section 4 of the report) considers the suitability of these analysis tools for DER studies. It considers steady state modeling and assessment work performed by ORNL using one commercially available tool on feeder data provided by a southern utility. Appendix A provides a technical report on the results of

  17. Awake craniotomy for gliomas in a high-field intraoperative magnetic resonance imaging suite: analysis of 42 cases.

    Science.gov (United States)

    Maldaun, Marcos V C; Khawja, Shumaila N; Levine, Nicholas B; Rao, Ganesh; Lang, Frederick F; Weinberg, Jeffrey S; Tummala, Sudhakar; Cowles, Charles E; Ferson, David; Nguyen, Anh-Thuy; Sawaya, Raymond; Suki, Dima; Prabhu, Sujit S

    2014-10-01

    The object of this study was to describe the experience of combining awake craniotomy techniques with high-field (1.5 T) intraoperative MRI (iMRI) for tumors adjacent to eloquent cortex. From a prospective database the authors obtained and evaluated the records of all patients who had undergone awake craniotomy procedures with cortical and subcortical mapping in the iMRI suite. The integration of these two modalities was assessed with respect to safety, operative times, workflow, extent of resection (EOR), and neurological outcome. Between February 2010 and December 2011, 42 awake craniotomy procedures using iMRI were performed in 41 patients for the removal of intraaxial tumors. There were 31 left-sided and 11 right-sided tumors. In half of the cases (21 [50%] of 42), the patient was kept awake for both motor and speech mapping. The mean duration of surgery overall was 7.3 hours (range 4.0-13.9 hours). The median EOR overall was 90%, and gross-total resection (EOR ≥ 95%) was achieved in 17 cases (40.5%). After viewing the first MR images after initial resection, further resection was performed in 17 cases (40.5%); the mean EOR in these cases increased from 56% to 67% after further resection. No deficits were observed preoperatively in 33 cases (78.5%), and worsening neurological deficits were noted immediately after surgery in 11 cases (26.2%). At 1 month after surgery, however, worsened neurological function was observed in only 1 case (2.3%). There was a learning curve with regard to patient positioning and setup times, although it did not adversely affect patient outcomes. Awake craniotomy can be safely performed in a high-field (1.5 T) iMRI suite to maximize tumor resection in eloquent brain areas with an acceptable morbidity profile at 1 month.

  18. Software and package applicating for network meta-analysis: A usage-based comparative study.

    Science.gov (United States)

    Xu, Chang; Niu, Yuming; Wu, Junyi; Gu, Huiyun; Zhang, Chao

    2017-12-21

    To compare and analyze the characteristics and functions of software applications for network meta-analysis (NMA). PubMed, EMbase, The Cochrane Library, the official websites of Bayesian inference Using Gibbs Sampling (BUGS), Stata and R, and Google were searched to collect the software and packages for performing NMA; software and packages published up to March 2016 were included. After collecting the software, packages, and their user guides, we used the software and packages to calculate a typical example. All characteristics, functions, and computed results were compared and analyzed. Ten types of software were included, including programming and non-programming software. They were developed mainly based on Bayesian or frequentist theory. Most types of software have the characteristics of easy operation, easy mastery, exact calculation, or excellent graphing. However, there was no single software that performed accurate calculations with superior graphing; this could only be achieved through the combination of two or more types of software. This study suggests that the user should choose the appropriate software according to personal programming basis, operational habits, and financial ability. Then, the choice of the combination of BUGS and R (or Stata) software to perform the NMA is considered. © 2017 Chinese Cochrane Center, West China Hospital of Sichuan University and John Wiley & Sons Australia, Ltd.

  19. NuFTA: A CASE Tool for Automatic Software Fault Tree Analysis

    International Nuclear Information System (INIS)

    Yun, Sang Hyun; Lee, Dong Ah; Yoo, Jun Beom

    2010-01-01

    Software fault tree analysis (SFTA) is widely used for analyzing software requiring high-reliability. In SFTA, experts predict failures of system through HA-ZOP (Hazard and Operability study) or FMEA (Failure Mode and Effects Analysis) and draw software fault trees about the failures. Quality and cost of the software fault tree, therefore, depend on knowledge and experience of the experts. This paper proposes a CASE tool NuFTA in order to assist experts of safety analysis. The NuFTA automatically generate software fault trees from NuSCR formal requirements specification. NuSCR is a formal specification language used for specifying software requirements of KNICS RPS (Reactor Protection System) in Korea. We used the SFTA templates proposed by in order to generate SFTA automatically. The NuFTA also generates logical formulae summarizing the failure's cause, and we have a plan to use the formulae usefully through formal verification techniques

  20. Analyzing the State of Static Analysis : A Large-Scale Evaluation in Open Source Software

    NARCIS (Netherlands)

    Beller, M.; Bholanath, R.; McIntosh, S.; Zaidman, A.E.

    2016-01-01

    The use of automatic static analysis has been a software engineering best practice for decades. However, we still do not know a lot about its use in real-world software projects: How prevalent is the use of Automated Static Analysis Tools (ASATs) such as FindBugs and JSHint? How do developers use

  1. A Method for Software Requirement Volatility Analysis Using QFD

    Directory of Open Access Journals (Sweden)

    Yunarso Anang

    2016-10-01

    Full Text Available Changes of software requirements are inevitable during the development life cycle. Rather than avoiding the circumstance, it is easier to just accept it and find a way to anticipate those changes. This paper proposes a method to analyze the volatility of requirement by using the Quality Function Deployment (QFD method and the introduced degree of volatility. Customer requirements are deployed to software functions and subsequently to architectural design elements. And then, after determining the potential for changes of the design elements, the degree of volatility of the software requirements is calculated. In this paper the method is described using a flow diagram and illustrated using a simple example, and is evaluated using a case study.

  2. Distortion Analysis Toolkit—A Software Tool for Easy Analysis of Nonlinear Audio Systems

    Directory of Open Access Journals (Sweden)

    Jyri Pakarinen

    2010-01-01

    Full Text Available Several audio effects devices deliberately add nonlinear distortion to the processed signal in order to create a desired sound. When creating virtual analog models of nonlinearly distorting devices, it would be very useful to carefully analyze the type of distortion, so that the model could be made as realistic as possible. While traditional system analysis tools such as the frequency response give detailed information on the operation of linear and time-invariant systems, they are less useful for analyzing nonlinear devices. Furthermore, although there do exist separate algorithms for nonlinear distortion analysis, there is currently no unified, easy-to-use tool for rapid analysis of distorting audio systems. This paper offers a remedy by introducing a new software tool for easy analysis of distorting effects. A comparison between a well-known guitar tube amplifier and two commercial software simulations is presented as a case study. This freely available software is written in Matlab language, but the analysis tool can also run as a standalone program, so the user does not need to have Matlab installed in order to perform the analysis.

  3. Progress in Addressing DNFSB Recommendation 2002-1 Issues: Improving Accident Analysis Software Applications

    International Nuclear Information System (INIS)

    VINCENT, ANDREW

    2005-01-01

    Defense Nuclear Facilities Safety Board (DNFSB) Recommendation 2002-1 (''Quality Assurance for Safety-Related Software'') identified a number of quality assurance issues on the use of software in Department of Energy (DOE) facilities for analyzing hazards, and designing and operating controls to prevent or mitigate potential accidents. Over the last year, DOE has begun several processes and programs as part of the Implementation Plan commitments, and in particular, has made significant progress in addressing several sets of issues particularly important in the application of software for performing hazard and accident analysis. The work discussed here demonstrates that through these actions, Software Quality Assurance (SQA) guidance and software tools are available that can be used to improve resulting safety analysis. Specifically, five of the primary actions corresponding to the commitments made in the Implementation Plan to Recommendation 2002-1 are identified and discussed in this paper. Included are the web-based DOE SQA Knowledge Portal and the Central Registry, guidance and gap analysis reports, electronic bulletin board and discussion forum, and a DOE safety software guide. These SQA products can benefit DOE safety contractors in the development of hazard and accident analysis by precluding inappropriate software applications and utilizing best practices when incorporating software results to safety basis documentation. The improvement actions discussed here mark a beginning to establishing stronger, standard-compliant programs, practices, and processes in SQA among safety software users, managers, and reviewers throughout the DOE Complex. Additional effort is needed, however, particularly in: (1) processes to add new software applications to the DOE Safety Software Toolbox; (2) improving the effectiveness of software issue communication; and (3) promoting a safety software quality assurance culture

  4. An effective technique for the software requirements analysis of NPP safety-critical systems, based on software inspection, requirements traceability, and formal specification

    International Nuclear Information System (INIS)

    Koo, Seo Ryong; Seong, Poong Hyun; Yoo, Junbeom; Cha, Sung Deok; Yoo, Yeong Jae

    2005-01-01

    A thorough requirements analysis is indispensable for developing and implementing safety-critical software systems such as nuclear power plant (NPP) software systems because a single error in the requirements can generate serious software faults. However, it is very difficult to completely analyze system requirements. In this paper, an effective technique for the software requirements analysis is suggested. For requirements verification and validation (V and V) tasks, our technique uses software inspection, requirement traceability, and formal specification with structural decomposition. Software inspection and requirements traceability analysis are widely considered the most effective software V and V methods. Although formal methods are also considered an effective V and V activity, they are difficult to use properly in the nuclear fields as well as in other fields because of their mathematical nature. In this work, we propose an integrated environment (IE) approach for requirements, which is an integrated approach that enables easy inspection by combining requirement traceability and effective use of a formal method. The paper also introduces computer-aided tools for supporting IE approach for requirements. Called the nuclear software inspection support and requirements traceability (NuSISRT), the tool incorporates software inspection, requirement traceability, and formal specification capabilities. We designed the NuSISRT to partially automate software inspection and analysis of requirement traceability. In addition, for the formal specification and analysis, we used the formal requirements specification and analysis tool for nuclear engineering (NuSRS)

  5. Using recurrence plot analysis for software execution interpretation and fault detection

    Science.gov (United States)

    Mosdorf, M.

    2015-09-01

    This paper shows a method targeted at software execution interpretation and fault detection using recurrence plot analysis. In in the proposed approach recurrence plot analysis is applied to software execution trace that contains executed assembly instructions. Results of this analysis are subject to further processing with PCA (Principal Component Analysis) method that simplifies number coefficients used for software execution classification. This method was used for the analysis of five algorithms: Bubble Sort, Quick Sort, Median Filter, FIR, SHA-1. Results show that some of the collected traces could be easily assigned to particular algorithms (logs from Bubble Sort and FIR algorithms) while others are more difficult to distinguish.

  6. GROMOS++Software for the Analysis of Biomolecular Simulation Trajectories

    NARCIS (Netherlands)

    Eichenberger, A.P.; Allison, J.R.; Dolenc, J.; Geerke, D.P.; Horta, B.A.C.; Meier, K; Oostenbrink, B.C.; Schmid, N.; Steiner, D; Wang, D.; van Gunsteren, W.F.

    2011-01-01

    GROMOS++ is a set of C++ programs for pre- and postprocessing of molecular dynamics simulation trajectories and as such is part of the GROningen MOlecular Simulation software for (bio)molecular simulation. It contains more than 70 programs that can be used to prepare data for the production of

  7. Algebraic software analysis and embedded simulation of a driving robot

    NARCIS (Netherlands)

    Merkx, L.L.F.; Duringhof, H.M.; Cuijpers, P.J.L.

    2007-01-01

    At TNO Automotive the Generic Driving Actuator (GDA) is developed. The GDA is a device capable of driving a vehicle fully automatically using the same interface as a human driver does. In this paper, the design of the GDA is discussed. The software and hardware of the GDA and its effect on vehicle

  8. Program spectra analysis in embedded software : A case study

    NARCIS (Netherlands)

    Abreu, R.; Zoeteweij, P.; Van Gemund, A.J.C.

    2006-01-01

    Because of constraints imposed by the market, embedded software in consumer electronics is almost inevitably shipped with faults and the goal is just to reduce the inherent unreliability to an acceptable level before a product has to be released. Automatic fault diagnosis is a valuable tool to

  9. Image analysis software versus direct anthropometry for breast measurements.

    Science.gov (United States)

    Quieregatto, Paulo Rogério; Hochman, Bernardo; Furtado, Fabianne; Machado, Aline Fernanda Perez; Sabino Neto, Miguel; Ferreira, Lydia Masako

    2014-10-01

    To compare breast measurements performed using the software packages ImageTool(r), AutoCAD(r) and Adobe Photoshop(r) with direct anthropometric measurements. Points were marked on the breasts and arms of 40 volunteer women aged between 18 and 60 years. When connecting the points, seven linear segments and one angular measurement on each half of the body, and one medial segment common to both body halves were defined. The volunteers were photographed in a standardized manner. Photogrammetric measurements were performed by three independent observers using the three software packages and compared to direct anthropometric measurements made with calipers and a protractor. Measurements obtained with AutoCAD(r) were the most reproducible and those made with ImageTool(r) were the most similar to direct anthropometry, while measurements with Adobe Photoshop(r) showed the largest differences. Except for angular measurements, significant differences were found between measurements of line segments made using the three software packages and those obtained by direct anthropometry. AutoCAD(r) provided the highest precision and intermediate accuracy; ImageTool(r) had the highest accuracy and lowest precision; and Adobe Photoshop(r) showed intermediate precision and the worst accuracy among the three software packages.

  10. Software Graphical User Interface For Analysis Of Images

    Science.gov (United States)

    Leonard, Desiree M.; Nolf, Scott R.; Avis, Elizabeth L.; Stacy, Kathryn

    1992-01-01

    CAMTOOL software provides graphical interface between Sun Microsystems workstation and Eikonix Model 1412 digitizing camera system. Camera scans and digitizes images, halftones, reflectives, transmissives, rigid or flexible flat material, or three-dimensional objects. Users digitize images and select from three destinations: work-station display screen, magnetic-tape drive, or hard disk. Written in C.

  11. Control and analysis software for a laser scanning microdensitometer

    Indian Academy of Sciences (India)

    A PC-based control software and data acquisition system is devel- oped for an existing ... Description of the system. Figure 1 shows a schematic diagram of the microdensitometer and the data acquisition system. ... ming language with very strong library functions and it also supports direct input/output programming. 5.

  12. Prospects for Evidence -Based Software Assurance: Models and Analysis

    Science.gov (United States)

    2015-09-01

    Languages and Systems (TOPLAS) 28, 1 (2006), 175–205. [27] Higgins , K. Spear-phishing attacks out of China targeted source code, intellectual property...Spinuzzi. Building more usable APIs. IEEE Software, 15(3):78–86, 1998. [23] Chris Parnin and Christoph Treude. Measuring api documentation on the web. In

  13. Software engineering article types: An analysis of the literature

    NARCIS (Netherlands)

    Montesi, M.; Lago, P.

    2008-01-01

    The software engineering (SE) community has recently recognized that the field lacks well-established research paradigms and clear guidance on how to write good research reports. With no comprehensive guide to the different article types in the field, article writing and reviewing heavily depends on

  14. Software package for analysis of completely randomized block design

    African Journals Online (AJOL)

    This study is to design and develop statistical software (package), OYSP1.0 which conveniently accommodates and analyzes large mass of data emanating from experimental designs, in particular, completely Randomized Block design. Visual Basic programming is used in the design. The statistical package OYSP 1.0 ...

  15. Risk Analysis and Decision-Making Software Package (1997 Version) User Manual

    Energy Technology Data Exchange (ETDEWEB)

    Chung, F.T.H.

    1999-02-11

    This manual provides instructions for using the U.S. Department of Energy's (DOE) risk analysis and decision making software (1997 version) developed at BDM Petroleum Technologies by BDM-Oklahoma, Inc. for DOE, under contract No. DE-AC22-94PC91OO8. This software provides petroleum producers with a simple, handy tool for exploration and production risk analysis and decision-making. It collects useful risk analysis tools in one package so that users do not have to use several programs separately. The software is simple to use, but still provides many functions. The 1997 version of the software package includes the following tools: (1) Investment risk (Gambler's ruin) analysis; (2) Monte Carlo simulation; (3) Best fit for distribution functions; (4) Sample and rank correlation; (5) Enhanced oil recovery method screening; and (6) artificial neural network. This software package is subject to change. Suggestions and comments from users are welcome and will be considered for future modifications and enhancements of the software. Please check the opening screen of the software for the current contact information. In the future, more tools will be added to this software package. This manual includes instructions on how to use the software but does not attempt to fully explain the theory and algorithms used to create it.

  16. Practicality for Software Hazard Analysis for Nuclear Safety I and C System

    International Nuclear Information System (INIS)

    Kim, Yong-Ho; Moon, Kwon-Ki; Chang, Young-Woo; Jeong, Soo-Hyun

    2016-01-01

    We are using the concept of system safety in engineering. It is difficult to make any system perfectly safe and probably a complete system may not easily be achieved. The standard definition of a system from MIL-STD- 882E is: “The organization of hardware, software, material, facilities, personnel, data, and services needed to perform a designated function within a stated environment with specified results.” From the perspective of the system safety engineer and the hazard analysis process, software is considered as a subsystem. Regarding hazard analysis, to date, methods for identifying software failures and determining their effects is still a research problem. Since the success of software development is based on rigorous test of hardware and software, it is necessary to check the balance between software test and hardware test, and in terms of efficiency. Lessons learned and experience from similar systems are important for the work of hazard analysis. No major hazard has been issued for the software developed and verified in Korean NPPs. In addition to hazard analysis, software development, and verification and validation were thoroughly performed. It is reasonable that the test implementation including the development of the test case, stress and abnormal conditions, error recovery situations, and high risk hazardous situations play a key role in detecting and preventing software faults

  17. Practicality for Software Hazard Analysis for Nuclear Safety I and C System

    Energy Technology Data Exchange (ETDEWEB)

    Kim, Yong-Ho; Moon, Kwon-Ki; Chang, Young-Woo; Jeong, Soo-Hyun [KEPCO Engineering and Construction Co., Deajeon (Korea, Republic of)

    2016-10-15

    We are using the concept of system safety in engineering. It is difficult to make any system perfectly safe and probably a complete system may not easily be achieved. The standard definition of a system from MIL-STD- 882E is: “The organization of hardware, software, material, facilities, personnel, data, and services needed to perform a designated function within a stated environment with specified results.” From the perspective of the system safety engineer and the hazard analysis process, software is considered as a subsystem. Regarding hazard analysis, to date, methods for identifying software failures and determining their effects is still a research problem. Since the success of software development is based on rigorous test of hardware and software, it is necessary to check the balance between software test and hardware test, and in terms of efficiency. Lessons learned and experience from similar systems are important for the work of hazard analysis. No major hazard has been issued for the software developed and verified in Korean NPPs. In addition to hazard analysis, software development, and verification and validation were thoroughly performed. It is reasonable that the test implementation including the development of the test case, stress and abnormal conditions, error recovery situations, and high risk hazardous situations play a key role in detecting and preventing software faults.

  18. Design and validation of Segment - freely available software for cardiovascular image analysis

    International Nuclear Information System (INIS)

    Heiberg, Einar; Sjögren, Jane; Ugander, Martin; Carlsson, Marcus; Engblom, Henrik; Arheden, Håkan

    2010-01-01

    Commercially available software for cardiovascular image analysis often has limited functionality and frequently lacks the careful validation that is required for clinical studies. We have already implemented a cardiovascular image analysis software package and released it as freeware for the research community. However, it was distributed as a stand-alone application and other researchers could not extend it by writing their own custom image analysis algorithms. We believe that the work required to make a clinically applicable prototype can be reduced by making the software extensible, so that researchers can develop their own modules or improvements. Such an initiative might then serve as a bridge between image analysis research and cardiovascular research. The aim of this article is therefore to present the design and validation of a cardiovascular image analysis software package (Segment) and to announce its release in a source code format. Segment can be used for image analysis in magnetic resonance imaging (MRI), computed tomography (CT), single photon emission computed tomography (SPECT) and positron emission tomography (PET). Some of its main features include loading of DICOM images from all major scanner vendors, simultaneous display of multiple image stacks and plane intersections, automated segmentation of the left ventricle, quantification of MRI flow, tools for manual and general object segmentation, quantitative regional wall motion analysis, myocardial viability analysis and image fusion tools. Here we present an overview of the validation results and validation procedures for the functionality of the software. We describe a technique to ensure continued accuracy and validity of the software by implementing and using a test script that tests the functionality of the software and validates the output. The software has been made freely available for research purposes in a source code format on the project home page (http://segment.heiberg.se). Segment

  19. User-driven integrated software lives: ``Paleomag'' paleomagnetics analysis on the Macintosh

    Science.gov (United States)

    Jones, Craig H.

    2002-12-01

    "PaleoMag," a paleomagnetics analysis package originally developed for the Macintosh operating system in 1988, allows examination of demagnetization of individual samples and analysis of directional data from collections of samples. Prior to recent reinvigorated development of the software for both Macintosh and Windows, it was widely used despite not running properly on machines and operating systems sold after 1995. This somewhat surprising situation demonstrates that there is a continued need for integrated analysis software within the earth sciences, in addition to well-developed scripting and batch-mode software. One distinct advantage of software like PaleoMag is in the ability to combine quality control with analysis within a unique graphical environment. Because such demands are frequent within the earth sciences, means of nurturing the development of similar software should be found.

  20. Decision making model design for antivirus software selection using Factor Analysis and Analytical Hierarchy Process

    OpenAIRE

    Nurhayati Ai; Gautama Aditya; Naseer Muchammad

    2018-01-01

    Virus spread increase significantly through the internet in 2017. One of the protection method is using antivirus software. The wide variety of antivirus software in the market tends to creating confusion among consumer. Selecting the right antivirus according to their needs has become difficult. This is the reason we conduct our research. We formulate a decision making model for antivirus software consumer. The model is constructed by using factor analysis and AHP method. First we spread que...

  1. Modular reweighting software for statistical mechanical analysis of biased equilibrium data

    Science.gov (United States)

    Sindhikara, Daniel J.

    2012-07-01

    Here a simple, useful, modular approach and software suite designed for statistical reweighting and analysis of equilibrium ensembles is presented. Statistical reweighting is useful and sometimes necessary for analysis of equilibrium enhanced sampling methods, such as umbrella sampling or replica exchange, and also in experimental cases where biasing factors are explicitly known. Essentially, statistical reweighting allows extrapolation of data from one or more equilibrium ensembles to another. Here, the fundamental separable steps of statistical reweighting are broken up into modules - allowing for application to the general case and avoiding the black-box nature of some “all-inclusive” reweighting programs. Additionally, the programs included are, by-design, written with little dependencies. The compilers required are either pre-installed on most systems, or freely available for download with minimal trouble. Examples of the use of this suite applied to umbrella sampling and replica exchange molecular dynamics simulations will be shown along with advice on how to apply it in the general case. New version program summaryProgram title: Modular reweighting version 2 Catalogue identifier: AEJH_v2_0 Program summary URL:http://cpc.cs.qub.ac.uk/summaries/AEJH_v2_0.html Program obtainable from: CPC Program Library, Queen's University, Belfast, N. Ireland Licensing provisions: GNU General Public License, version 3 No. of lines in distributed program, including test data, etc.: 179 118 No. of bytes in distributed program, including test data, etc.: 8 518 178 Distribution format: tar.gz Programming language: C++, Python 2.6+, Perl 5+ Computer: Any Operating system: Any RAM: 50-500 MB Supplementary material: An updated version of the original manuscript (Comput. Phys. Commun. 182 (2011) 2227) is available Classification: 4.13 Catalogue identifier of previous version: AEJH_v1_0 Journal reference of previous version: Comput. Phys. Commun. 182 (2011) 2227 Does the new

  2. Geomass: geological modelling analysis and simulation software for the characterisation of fractured hard rock environments

    International Nuclear Information System (INIS)

    White, M.J.; Humm, J.P.; Todaka, N.; Takeuchi, S.

    1998-01-01

    This paper presents the development and functionality of a suite of applications which are being developed to support the geological investigations in the Tono URL. GEOMASS will include 3D geological modelling, 3D fluid flow and solute transport and 3D visualisation capabilities. The 3D geological modelling in GEOMASS will be undertaken using a commercially available 3D geological modelling system, EarthVision. EarthVision provides 3D mapping, interpolation, analysis and well planning software. It is being used in the GEOMASS system to provide the geological framework (structure of the tectonic faults and stratigraphic and lithological contacts) to the 3D flow code. It is also being used to gather the geological data into a standard format for use throughout the investigation programme. The 3D flow solver to be used in GEOMASS is called Frac-Affinity. Frac-Affinity models the 3D geometry of the flow system as a hybrid medium, in which the rock contains both permeable, intact rock and fractures. Frac-Affinity also performs interpolation of heterogeneous rock mass property data using a fractal based approach and the generation of stochastic fracture networks. The code solves for transient flow over a user defined sub-region of the geological framework supplied by EarthVision. The results from Frac-Affinity are passed back to EarthVision so that the flow simulation can be visualized alongside the geological structure. This work-flow allows rapid assessment of the role of geological features in controlling flow. This paper will present the concepts and approach of GEOMASS and illustrate the practical application of GEOMASS using data from Tono

  3. Usability study of clinical exome analysis software: top lessons learned and recommendations.

    Science.gov (United States)

    Shyr, Casper; Kushniruk, Andre; Wasserman, Wyeth W

    2014-10-01

    New DNA sequencing technologies have revolutionized the search for genetic disruptions. Targeted sequencing of all protein coding regions of the genome, called exome analysis, is actively used in research-oriented genetics clinics, with the transition to exomes as a standard procedure underway. This transition is challenging; identification of potentially causal mutation(s) amongst ∼10(6) variants requires specialized computation in combination with expert assessment. This study analyzes the usability of user interfaces for clinical exome analysis software. There are two study objectives: (1) To ascertain the key features of successful user interfaces for clinical exome analysis software based on the perspective of expert clinical geneticists, (2) To assess user-system interactions in order to reveal strengths and weaknesses of existing software, inform future design, and accelerate the clinical uptake of exome analysis. Surveys, interviews, and cognitive task analysis were performed for the assessment of two next-generation exome sequence analysis software packages. The subjects included ten clinical geneticists who interacted with the software packages using the "think aloud" method. Subjects' interactions with the software were recorded in their clinical office within an urban research and teaching hospital. All major user interface events (from the user interactions with the packages) were time-stamped and annotated with coding categories to identify usability issues in order to characterize desired features and deficiencies in the user experience. We detected 193 usability issues, the majority of which concern interface layout and navigation, and the resolution of reports. Our study highlights gaps in specific software features typical within exome analysis. The clinicians perform best when the flow of the system is structured into well-defined yet customizable layers for incorporation within the clinical workflow. The results highlight opportunities to

  4. AMIDE: A Free Software Tool for Multimodality Medical Image Analysis

    Directory of Open Access Journals (Sweden)

    Andreas Markus Loening

    2003-07-01

    Full Text Available Amide's a Medical Image Data Examiner (AMIDE has been developed as a user-friendly, open-source software tool for displaying and analyzing multimodality volumetric medical images. Central to the package's abilities to simultaneously display multiple data sets (e.g., PET, CT, MRI and regions of interest is the on-demand data reslicing implemented within the program. Data sets can be freely shifted, rotated, viewed, and analyzed with the program automatically handling interpolation as needed from the original data. Validation has been performed by comparing the output of AMIDE with that of several existing software packages. AMIDE runs on UNIX, Macintosh OS X, and Microsoft Windows platforms, and it is freely available with source code under the terms of the GNU General Public License.

  5. [Development of analysis software package for the two kinds of Japanese fluoro-d-glucose-positron emission tomography guideline].

    Science.gov (United States)

    Matsumoto, Keiichi; Endo, Keigo

    2013-06-01

    Two kinds of Japanese guidelines for the data acquisition protocol of oncology fluoro-D-glucose-positron emission tomography (FDG-PET)/computed tomography (CT) scans were created by the joint task force of the Japanese Society of Nuclear Medicine Technology (JSNMT) and the Japanese Society of Nuclear Medicine (JSNM), and published in Kakuigaku-Gijutsu 27(5): 425-456, 2007 and 29(2): 195-235, 2009. These guidelines aim to standardize PET image quality among facilities and different PET/CT scanner models. The objective of this study was to develop a personal computer-based performance measurement and image quality processor for the two kinds of Japanese guidelines for oncology (18)F-FDG PET/CT scans. We call this software package the "PET quality control tool" (PETquact). Microsoft Corporation's Windows(™) is used as the operating system for PETquact, which requires 1070×720 image resolution and includes 12 different applications. The accuracy was examined for numerous applications of PETquact. For example, in the sensitivity application, the system sensitivity measurement results were equivalent when comparing two PET sinograms obtained from the PETquact and the report. PETquact is suited for analysis of the two kinds of Japanese guideline, and it shows excellent spec to performance measurements and image quality analysis. PETquact can be used at any facility if the software package is installed on a laptop computer.

  6. The Effects of Development Team Skill on Software Product Quality

    Science.gov (United States)

    Beaver, Justin M.; Schiavone, Guy A.

    2006-01-01

    This paper provides an analysis of the effect of the skill/experience of the software development team on the quality of the final software product. A method for the assessment of software development team skill and experience is proposed, and was derived from a workforce management tool currently in use by the National Aeronautics and Space Administration. Using data from 26 smallscale software development projects, the team skill measures are correlated to 5 software product quality metrics from the ISO/IEC 9126 Software Engineering Product Quality standard. in the analysis of the results, development team skill is found to be a significant factor in the adequacy of the design and implementation. In addition, the results imply that inexperienced software developers are tasked with responsibilities ill-suited to their skill level, and thus have a significant adverse effect on the quality of the software product. Keywords: software quality, development skill, software metrics

  7. Nonlinear analysis of reinforced concrete structures using software package abaqus

    OpenAIRE

    Marković Nemanja; Stojić Dragoslav; Cvetković Radovan

    2014-01-01

    Reinforced concrete (AB) is characterized by huge inhomogeneity resulting from the material characteristics of the concrete, then, quasi-brittle behavior during failure. These and other phenomena require the introduction of material nonlinearity in the modeling of reinforced concrete structures. This paper presents the modeling reinforced concrete in the software package ABAQUS. A brief theoretical overview is presented of methods such as: Concrete Damage Plasticity (CDP), Smeared Concrete Cr...

  8. Comparison of two three-dimensional cephalometric analysis computer software

    OpenAIRE

    Sawchuk, Dena; Alhadlaq, Adel; Alkhadra, Thamer; Carlyle, Terry D; Kusnoto, Budi; El-Bialy, Tarek

    2014-01-01

    Background: Three-dimensional cephalometric analyses are getting more attraction in orthodontics. The aim of this study was to compare two softwares to evaluate three-dimensional cephalometric analyses of orthodontic treatment outcomes. Materials and Methods: Twenty cone beam computed tomography images were obtained using i-CAT® imaging system from patient's records as part of their regular orthodontic records. The images were analyzed using InVivoDental5.0 (Anatomage Inc.) and 3DCeph™ (Unive...

  9. Security Analysis of a Software Defined Wide Area Network Solution

    OpenAIRE

    Rajendran, Ashok

    2016-01-01

    Enterprise wide area network (WAN) is a private network that connects the computers and other devices across an organisation's branch locations and the data centers. It forms the backbone of enterprise communication. Currently, multiprotocol label switching (MPLS) is commonly used to provide this service. As a recent alternative to MPLS, software-dened wide area networking (SD-WAN) solutions are being introduced as an IP based cloud-networking service for enterprises. SD-WAN virtualizes the n...

  10. Software for muscle fibre type classification and analysis

    Czech Academy of Sciences Publication Activity Database

    Karen, Petr; Števanec, M.; Smerdu, V.; Cvetko, E.; Kubínová, Lucie; Eržen, I.

    2009-01-01

    Roč. 53, č. 2 (2009), s. 87-95 ISSN 1121-760X R&D Projects: GA MŠk(CZ) LC06063; GA MŠk(CZ) MEB090910 Institutional research plan: CEZ:AV0Z50110509 Keywords : muscle fiber types * myosin heavy chain isoforms * image processing Subject RIV: JC - Computer Hardware ; Software Impact factor: 0.886, year: 2009

  11. The analysis of software system in SOPHY SPECT

    International Nuclear Information System (INIS)

    Xu Chikang

    1993-01-01

    The FORTH software system of the Single Photon Emission Computed Tomography (SPECT) made by French SOPHA MEDICAL Corp. are analysed. On the basis of brief introduction to the construction principle and programming methods of FORTH language the whole structure and lay-out of the Sophy system are described. With the help of some figures the modular structure, the allocation of the hard disk and internal storage, as well as the running procedure of the system are introduced in details

  12. Potku – New analysis software for heavy ion elastic recoil detection analysis

    International Nuclear Information System (INIS)

    Arstila, K.; Julin, J.; Laitinen, M.I.; Aalto, J.; Konu, T.; Kärkkäinen, S.; Rahkonen, S.; Raunio, M.; Itkonen, J.; Santanen, J.-P.; Tuovinen, T.; Sajavaara, T.

    2014-01-01

    Time-of-flight elastic recoil detection (ToF-ERD) analysis software has been developed. The software combines a Python-language graphical front-end with a C code computing back-end in a user-friendly way. The software uses a list of coincident time-of-flight–energy (ToF–E) events as an input. The ToF calibration can be determined with a simple graphical procedure. The graphical interface allows the user to select different elements and isotopes from a ToF–E histogram and to convert the selections to individual elemental energy and depth profiles. The resulting sample composition can be presented as relative or absolute concentrations by integrating the depth profiles over user-defined ranges. Beam induced composition changes can be studied by displaying the event-based data in fractions relative to the substrate reference data. Optional angular input data allows for kinematic correction of the depth profiles. This open source software is distributed under the GPL license for Linux, Mac, and Windows environments

  13. Potku – New analysis software for heavy ion elastic recoil detection analysis

    Energy Technology Data Exchange (ETDEWEB)

    Arstila, K., E-mail: kai.arstila@jyu.fi [Department of Physics, University of Jyväskylä, P.O. Box 35, FI-40014, Jyväskylä (Finland); Julin, J.; Laitinen, M.I. [Department of Physics, University of Jyväskylä, P.O. Box 35, FI-40014, Jyväskylä (Finland); Aalto, J.; Konu, T.; Kärkkäinen, S.; Rahkonen, S.; Raunio, M.; Itkonen, J.; Santanen, J.-P.; Tuovinen, T. [Department of Mathematical Information Technology, University of Jyväskylä, P.O. Box 35, FI-40014, Jyväskylä (Finland); Sajavaara, T. [Department of Physics, University of Jyväskylä, P.O. Box 35, FI-40014, Jyväskylä (Finland)

    2014-07-15

    Time-of-flight elastic recoil detection (ToF-ERD) analysis software has been developed. The software combines a Python-language graphical front-end with a C code computing back-end in a user-friendly way. The software uses a list of coincident time-of-flight–energy (ToF–E) events as an input. The ToF calibration can be determined with a simple graphical procedure. The graphical interface allows the user to select different elements and isotopes from a ToF–E histogram and to convert the selections to individual elemental energy and depth profiles. The resulting sample composition can be presented as relative or absolute concentrations by integrating the depth profiles over user-defined ranges. Beam induced composition changes can be studied by displaying the event-based data in fractions relative to the substrate reference data. Optional angular input data allows for kinematic correction of the depth profiles. This open source software is distributed under the GPL license for Linux, Mac, and Windows environments.

  14. Software design specification and analysis(NuFDS) approach for the safety critical software based on porgrammable logic controller(PLC)

    International Nuclear Information System (INIS)

    Koo, Seo Ryong; Seong, Poong Hyun; Jung, Jin Yong; Choi, Seong Soo

    2004-01-01

    This paper introduces the software design specification and analysis technique for the safety-critical system based on Programmable Logic Controller (PLC). During software development phases, the design phase should perform an important role to connect between requirements phase and implementation phase as a process of translating problem requirements into software structures. In this work, the Nuclear FBD-style Design Specification and analysis (NuFDS) approach was proposed. The NuFDS approach for nuclear Instrumentation and Control (I and C) software are suggested in a straight forward manner. It consists of four major specifications as follows; Database, Software Architecture, System Behavior, and PLC Hardware Configuration. Additionally, correctness, completeness, consistency, and traceability check techniques are also suggested for the formal design analysis in NuFDS approach. In addition, for the tool supporting, we are developing NuSDS tool based on the NuFDS approach which is a tool, especially for the software design specification in nuclear fields

  15. Comparative Performance Analysis of Machine Learning Techniques for Software Bug Detection

    OpenAIRE

    Saiqa Aleem; Luiz Fernando Capretz; Faheem Ahmed

    2015-01-01

    Machine learning techniques can be used to analyse data from different perspectives and enable developers to retrieve useful information. Machine learning techniques are proven to be useful in terms of software bug prediction. In this paper, a comparative performance analysis of different machine learning techniques is explored f or software bug prediction on public available data sets. Results showed most of the mac ...

  16. Choosing your weapons : on sentiment analysis tools for software engineering research

    NARCIS (Netherlands)

    Jongeling, R.M.; Datta, S.; Serebrenik, A.; Koschke, R.; Krinke, J.; Robillard, M.

    2015-01-01

    Recent years have seen an increasing attention to social aspects of software engineering, including studies of emotions and sentiments experienced and expressed by the software developers. Most of these studies reuse existing sentiment analysis tools such as SentiStrength and NLTK. However, these

  17. FieldTrip: Open source software for advanced analysis of MEG, EEG, and invasive electrophysiological data

    NARCIS (Netherlands)

    Oostenveld, R.; Fries, P.; Maris, E.G.G.; Schoffelen, J.M.

    2011-01-01

    This paper describes FieldTrip, an open source software package that we developed for the analysis of MEG, EEG, and other electrophysiological data. The software is implemented as a MATLAB toolbox and includes a complete set of consistent and user-friendly high-level functions that allow

  18. Analysis and design of software ecosystem architectures – Towards the 4S telemedicine ecosystem

    DEFF Research Database (Denmark)

    Christensen, Henrik Bærbak; Hansen, Klaus Marius; Kyng, Morten

    2014-01-01

    performed a descriptive, revelatory case study of the Danish telemedicine ecosystem and for ii), we experimentally designed, implemented, and evaluated the architecture of 4S. Results We contribute in three areas. First, we define the software ecosystem architecture concept that captures organization......, and application stove-pipes that inhibit the adoption of telemedical solutions. To which extent can a software ecosystem approach to telemedicine alleviate this? Objective In this article, we define the concept of software ecosystem architecture as the structure(s) of a software ecosystem comprising elements...... experience in creating and evolving the 4S telemedicine ecosystem. Conclusion The concept of software ecosystem architecture can be used analytically and constructively in respectively the analysis and design of software ecosystems....

  19. The software safety analysis based on SFTA for reactor power regulating system in nuclear power plant

    International Nuclear Information System (INIS)

    Liu Zhaohui; Yang Xiaohua; Liao Longtao; Wu Zhiqiang

    2015-01-01

    The digitalized Instrumentation and Control (I and C) system of Nuclear power plants can provide many advantages. However, digital control systems induce new failure modes that differ from those of analog control systems. While the cost effectiveness and flexibility of software is widely recognized, it is very difficult to achieve and prove high levels of dependability and safety assurance for the functions performed by process control software, due to the very flexibility and potential complexity of the software itself. Software safety analysis (SSA) was one way to improve the software safety by identify the system hazards caused by software failure. This paper describes the application of a software fault tree analysis (SFTA) at the software design phase. At first, we evaluate all the software modules of the reactor power regulating system in nuclear power plant and identify various hazards. The SFTA was applied to some critical modules selected from the previous step. At last, we get some new hazards that had not been identified in the prior processes of the document evaluation which were helpful for our design. (author)

  20. Verification of LRFD Bridge Design and Analysis Software for INDOT

    OpenAIRE

    Varma, Amit H.; Seo, Jungil

    2009-01-01

    NCHRP Process 12-50 was implemented to evaluate and verify composite steel I-girder bridge design software used commonly in Indiana. A test-bed of twenty one bridges was developed with the guidance from an Indiana Department of Transportation appointed research advisory panel (RAP). The test-bed included five simple-span and sixteen multi-span bridge superstructures. More than 80 parameters were required to define a bridge and they include bridge span, girder spacing, number of beams, section...

  1. Software component quality evaluation

    Science.gov (United States)

    Clough, A. J.

    1991-01-01

    The paper describes a software inspection process that can be used to evaluate the quality of software components. Quality criteria, process application, independent testing of the process and proposed associated tool support are covered. Early results indicate that this technique is well suited for assessing software component quality in a standardized fashion. With automated machine assistance to facilitate both the evaluation and selection of software components, such a technique should promote effective reuse of software components.

  2. Application of Gaia Analysis Software AGIS to Nano-JASMINE

    Science.gov (United States)

    Yamada, Y.; Lammers, U.; Gouda, N.

    2011-07-01

    The core data reduction for the Nano-JASMINE mission is planned to be done with Gaia's Astrometric Global Iterative Solution (AGIS). Nano-JASMINE is an ultra small (35 kg) satellite for astrometry observations in Japan and Gaia is ESA's large (over 1000 kg) next-generation astrometry mission. The accuracy of Nano-JASMINE is about 3 mas, comparable to the Hipparcos mission, Gaia's predecessor some 20 years ago. It is challenging that such a small satellite can perform real scientific observations. The collaboration for sharing software started in 2007. In addition to similar design and operating principles of the two missions, this is possible thanks to the encapsulation of all Gaia-specific aspects of AGIS in a Parameter Database. Nano-JASMINE will be the test bench for the Gaia AGIS software. We present this idea in detail and the necessary practical steps to make AGIS work with Nano-JASMINE data. We also show the key mission parameters, goals, and status of the data reduction for the Nano-JASMINE.

  3. SEDA: A software package for the Statistical Earthquake Data Analysis

    Science.gov (United States)

    Lombardi, A. M.

    2017-03-01

    In this paper, the first version of the software SEDA (SEDAv1.0), designed to help seismologists statistically analyze earthquake data, is presented. The package consists of a user-friendly Matlab-based interface, which allows the user to easily interact with the application, and a computational core of Fortran codes, to guarantee the maximum speed. The primary factor driving the development of SEDA is to guarantee the research reproducibility, which is a growing movement among scientists and highly recommended by the most important scientific journals. SEDAv1.0 is mainly devoted to produce accurate and fast outputs. Less care has been taken for the graphic appeal, which will be improved in the future. The main part of SEDAv1.0 is devoted to the ETAS modeling. SEDAv1.0 contains a set of consistent tools on ETAS, allowing the estimation of parameters, the testing of model on data, the simulation of catalogs, the identification of sequences and forecasts calculation. The peculiarities of routines inside SEDAv1.0 are discussed in this paper. More specific details on the software are presented in the manual accompanying the program package.

  4. The IFPUG guide to IT and software measurement

    CERN Document Server

    IFPUG

    2012-01-01

    The widespread deployment of millions of current and emerging software applications has placed software economic studies among the most critical of any form of business analysis. Unfortunately, a lack of an integrated suite of metrics makes software economic analysis extremely difficult. The International Function Point Users Group (IFPUG), a nonprofit and member-governed organization, has become the recognized leader in promoting the effective management of application software development and maintenance activities. The IFPUG Guide to IT and Software Measurement brings together 52 leading so

  5. Application of software quality assurance methods in validation and maintenance of reactor analysis computer codes

    International Nuclear Information System (INIS)

    Reznik, L.

    1994-01-01

    Various computer codes employed at Israel Electricity Company for preliminary reactor design analysis and fuel cycle scoping calculations have been often subject to program source modifications. Although most changes were due to computer or operating system compatibility problems, a number of significant modifications were due to model improvement and enhancements of algorithm efficiency and accuracy. With growing acceptance of software quality assurance requirements and methods, a program of implementing extensive testing of modified software has been adopted within the regular maintenance activities. In this work survey has been performed of various software quality assurance methods of software testing which belong mainly to the two major categories of implementation ('white box') and specification-based ('black box') testing. The results of this survey exhibits a clear preference of specification-based testing. In particular the equivalence class partitioning method and the boundary value method have been selected as especially suitable functional methods for testing reactor analysis codes.A separate study of software quality assurance methods and techniques has been performed in this work objective to establish appropriate pre-test software specification methods. Two methods of software analysis and specification have been selected as the most suitable for this purpose: The method of data flow diagrams has been shown to be particularly valuable for performing the functional/procedural software specification while the entities - relationship diagrams has been approved to be efficient for specifying software data/information domain. Feasibility of these two methods has been analyzed in particular for software uncertainty analysis and overall code accuracy estimation. (author). 14 refs

  6. Software for tomographic analysis: application in ceramic filters

    International Nuclear Information System (INIS)

    Figuerola, W.B.; Assis, J.T.; Oliveira, L.F.; Lopes, R.T.

    2001-01-01

    New methods for acquiring data have been developed with the technological advances. With this, it has been possible to obtain more precise data and, consequently produce results with greater reliability. Among the variety of acquisition methods available, those that have volume description, as CT (Computerized Tomography) and NMR (Nuclear Magnetic Resonance) stand out. The models of volumetric data (group of data that describe a solid object from a three dimensional space) are being greatly used in diversity of areas as a way of inspection, modeling and simulation of objects in a three - dimensional space. Applications of this model are already found in Mechanic Engineering, Geosciences, Medicine and other areas. In the area of engineering it is sometimes necessary to use industrial CT as the only non-invasive form of inspection the interior of pieces without destroying them. The 3D micro focus X-ray tomography is one technique of non destructive testing used in the most different areas of science and technology, given its capacity to generate clean images (practically free of the unhappiness effect) and high resolution reconstructions. The unsharpness effect minimization and space resolution improvement are consequences of the focal spot size reduction in the X-ray micro focus tube to dimensions smaller than 50 mm. The ceramic filters are used in a wide area in the metallurgic industry, particularly in the cast aluminum where they are used to clean the waste coming through the liquid aluminum. The ceramic filters used in this work are manufactured by FUSICO (German company) and they are constructed from foams. They are manufactured at three models: 10, 20 and 30 ppi (porous per inch). In this paper we present the development of software to analyze and characterize ceramic filters, which can be divided in four stages. This software was developed in C++ language, using objects oriented programming. It is also capable of being executed in multiple platforms (Windows

  7. Software project profitability analysis using temporal probabilistic reasoning; an empirical study with the CASSE framework

    CSIR Research Space (South Africa)

    Balikuddembe, JK

    2009-04-01

    Full Text Available Undertaking adequate risk management by understanding project requirements and ensuring that viable estimates are made on software projects require extensive application and sophisticated techniques of analysis and interpretation. Informative...

  8. Development of the Free-space Optical Communications Analysis Software (FOCAS)

    Science.gov (United States)

    Jeganathan, M.; Mecherle, G.; Lesh, J.

    1998-01-01

    The Free-space Optical Communications Analysis Software (FOCAS) was developed at the Jet Propulsion Laboratory (JPL) to provide mission planners, systems engineers and communications engineers with an easy to use tool to analyze optical communications link.

  9. Development of tools for safety analysis of control software in advanced reactors

    Energy Technology Data Exchange (ETDEWEB)

    Guarro, S.; Yau, M.; Motamed, M. [Advanced Systems Concepts Associates, El Segundo, CA (United States)

    1996-04-01

    Software based control systems have gained a pervasive presence in a wide variety of applications, including nuclear power plant control and protection systems which are within the oversight and licensing responsibility of the US Nuclear Regulatory Commission. While the cost effectiveness and flexibility of software based plant process control is widely recognized, it is very difficult to achieve and prove high levels of demonstrated dependability and safety assurance for the functions performed by process control software, due to the very flexibility and potential complexity of the software itself. The development of tools to model, analyze and test software design and implementations in the context of the system that the software is designed to control can greatly assist the task of providing higher levels of assurance than those obtainable by software testing alone. This report presents and discusses the development of the Dynamic Flowgraph Methodology (DFM) and its application in the dependability and assurance analysis of software-based control systems. The features of the methodology and full-scale examples of application to both generic process and nuclear power plant control systems are presented and discussed in detail. The features of a workstation software tool developed to assist users in the application of DFM are also described.

  10. Development of tools for safety analysis of control software in advanced reactors

    International Nuclear Information System (INIS)

    Guarro, S.; Yau, M.; Motamed, M.

    1996-04-01

    Software based control systems have gained a pervasive presence in a wide variety of applications, including nuclear power plant control and protection systems which are within the oversight and licensing responsibility of the US Nuclear Regulatory Commission. While the cost effectiveness and flexibility of software based plant process control is widely recognized, it is very difficult to achieve and prove high levels of demonstrated dependability and safety assurance for the functions performed by process control software, due to the very flexibility and potential complexity of the software itself. The development of tools to model, analyze and test software design and implementations in the context of the system that the software is designed to control can greatly assist the task of providing higher levels of assurance than those obtainable by software testing alone. This report presents and discusses the development of the Dynamic Flowgraph Methodology (DFM) and its application in the dependability and assurance analysis of software-based control systems. The features of the methodology and full-scale examples of application to both generic process and nuclear power plant control systems are presented and discussed in detail. The features of a workstation software tool developed to assist users in the application of DFM are also described

  11. The MicroAnalysis Toolkit: X-ray Fluorescence Image Processing Software

    International Nuclear Information System (INIS)

    Webb, S. M.

    2011-01-01

    The MicroAnalysis Toolkit is an analysis suite designed for the processing of x-ray fluorescence microprobe data. The program contains a wide variety of analysis tools, including image maps, correlation plots, simple image math, image filtering, multiple energy image fitting, semi-quantitative elemental analysis, x-ray fluorescence spectrum analysis, principle component analysis, and tomographic reconstructions. To be as widely useful as possible, data formats from many synchrotron sources can be read by the program with more formats available by request. An overview of the most common features will be presented.

  12. JULIDE: a software tool for 3D reconstruction and statistical analysis of autoradiographic mouse brain sections.

    Directory of Open Access Journals (Sweden)

    Delphine Ribes

    Full Text Available In this article we introduce JULIDE, a software toolkit developed to perform the 3D reconstruction, intensity normalization, volume standardization by 3D image registration and voxel-wise statistical analysis of autoradiographs of mouse brain sections. This software tool has been developed in the open-source ITK software framework and is freely available under a GPL license. The article presents the complete image processing chain from raw data acquisition to 3D statistical group analysis. Results of the group comparison in the context of a study on spatial learning are shown as an illustration of the data that can be obtained with this tool.

  13. Analysis for Parallel Execution without Performing Hardware/Software Co-simulation

    OpenAIRE

    Muhammad Rashid

    2014-01-01

    Hardware/software co-simulation improves the performance of embedded applications by executing the applications on a virtual platform before the actual hardware is available in silicon. However, the virtual platform of the target architecture is often not available during early stages of the embedded design flow. Consequently, analysis for parallel execution without performing hardware/software co-simulation is required. This article presents an analysis methodology for parallel execution of ...

  14. An assessment of software for flow cytometry analysis in banana plants

    Directory of Open Access Journals (Sweden)

    Renata Alves Lara Silva

    2014-02-01

    Full Text Available Flow cytometry is a technique that yields rapid results in analyses of cell properties such as volume, morphological complexity and quantitative DNA content, and it is considered more convenient than other techniques. However, the analysis usually generates histograms marked by variations that can be produced by many factors, including differences between the software packages that capture the data generated by the flow cytometer. The objective of the present work was to evaluate the performance of four software products commonly used in flow cytometry based on quantifications of DNA content and analyses of the coefficients of variation associated with the software outputs. Readings were obtained from 25 ‘NBA’ (AA banana leaf samples using the FACSCalibur (BD flow cytometer, and 25 histograms from each software product (CellQuest™, WinMDI™, FlowJo™ and FCS Express™ were analyzed to obtain the estimated DNA content and the coefficient of variation (CV of the estimates. The values of DNA content obtained from the software did not differ significantly. However, the CV analysis showed that the precision of the WinMDI™ software was low and that the CV values were underestimated, whereas the remaining software showed CV values that were in relatively close agreement with those found in the literature. The CellQuest™ software is recommended because it was developed by the same company that produces the flow cytometer used in the present study.

  15. Sensitivity Analysis for Design Optimization Integrated Software Tools, Phase I

    Data.gov (United States)

    National Aeronautics and Space Administration — The objective of this proposed project is to provide a new set of sensitivity analysis theory and codes, the Sensitivity Analysis for Design Optimization Integrated...

  16. Development of computer software for pavement life cycle cost analysis.

    Science.gov (United States)

    1988-01-01

    The life cycle cost analysis program (LCCA) is designed to automate and standardize life cycle costing in Virginia. It allows the user to input information necessary for the analysis, and it then completes the calculations and produces a printed copy...

  17. GRO/EGRET data analysis software: An integrated system of custom and commercial software using standard interfaces

    Science.gov (United States)

    Laubenthal, N. A.; Bertsch, D.; Lal, N.; Etienne, A.; Mcdonald, L.; Mattox, J.; Sreekumar, P.; Nolan, P.; Fierro, J.

    1992-01-01

    The Energetic Gamma Ray Telescope Experiment (EGRET) on the Compton Gamma Ray Observatory has been in orbit for more than a year and is being used to map the full sky for gamma rays in a wide energy range from 30 to 20,000 MeV. Already these measurements have resulted in a wide range of exciting new information on quasars, pulsars, galactic sources, and diffuse gamma ray emission. The central part of the analysis is done with sky maps that typically cover an 80 x 80 degree section of the sky for an exposure time of several days. Specific software developed for this program generates the counts, exposure, and intensity maps. The analysis is done on a network of UNIX based workstations and takes full advantage of a custom-built user interface called X-dialog. The maps that are generated are stored in the FITS format for a collection of energies. These, along with similar diffuse emission background maps generated from a model calculation, serve as input to a maximum likelihood program that produces maps of likelihood with optional contours that are used to evaluate regions for sources. Likelihood also evaluates the background corrected intensity at each location for each energy interval from which spectra can be generated. Being in a standard FITS format permits all of the maps to be easily accessed by the full complement of tools available in several commercial astronomical analysis systems. In the EGRET case, IDL is used to produce graphics plots in two and three dimensions and to quickly implement any special evaluation that might be desired. Other custom-built software, such as the spectral and pulsar analyses, take advantage of the XView toolkit for display and Postscript output for the color hard copy. This poster paper outlines the data flow and provides examples of the user interfaces and output products. It stresses the advantages that are derived from the integration of the specific instrument-unique software and powerful commercial tools for graphics and

  18. Latest Developments in Data Analysis and Structure Determination and Refinement: Software for Chemical Crystallography

    International Nuclear Information System (INIS)

    Dix, I.; Adam, M.; Jacob, H. F.; Roter, A.

    2003-01-01

    The introduction of a two-dimensional CCD X-ray detector nearly 10 years ago by Bruker started a revolution in chemical crystallography. Since then, crystallographers can accomplish a complete data collection even of small and poorly scattering crystals in a few hours instead of days. The launch of the kappa geometry by Nonius a few years ago beforehand equally revolutionized the field of single crystal diffractometry. Currently Bruker Nonius has far more than 500 CCD systems installed. The latest development of Bruker Nonius, the X8 APEX, is the powerful combination of both: the APEX CCD detector and the unique Kappa four-circle goniometer. The APEX 4K CCD detector provides the utmost sensitivity, while the Kappa four-circle goniometer offers a very open geometry, granting all the flexibility to align any crystallographic axis. This provides a more efficient data collection for axial photographs to investigate e.g. diffuse scattering or incommensurate structures. Even the crystal-detector distance is computer-controlled for precise and superior data collection. The X8 APEX software suite gives a whole new look to the CCD users interface. It not only has improved data collection abilities, but also guides the chemist or mineralogist through gathering the raw crystal data to producing the final crystal structure. It provides context-dependent menus, which are well-known from business software packages such as Outlook. The tools for unit cell determination, views into reciprocal space, optimisation of the data collection strategy, data integration, scaling and correcting (SADABS) as well as tools for structure solving and refining (SHELXTL package) will be presented. Low temperature work has become an essential tool for challenging samples. The Bruker Nonius Kryo-Flex cryogenic device makes chemical crystallography at low temperatures a routine method in your laboratory. Of course, the Kryo-Flex is fully controlled by the new graphical user interface of the X8 APEX

  19. Learning from examples - Generation and evaluation of decision trees for software resource analysis

    Science.gov (United States)

    Selby, Richard W.; Porter, Adam A.

    1988-01-01

    A general solution method for the automatic generation of decision (or classification) trees is investigated. The approach is to provide insights through in-depth empirical characterization and evaluation of decision trees for software resource data analysis. The trees identify classes of objects (software modules) that had high development effort. Sixteen software systems ranging from 3,000 to 112,000 source lines were selected for analysis from a NASA production environment. The collection and analysis of 74 attributes (or metrics), for over 4,700 objects, captured information about the development effort, faults, changes, design style, and implementation style. A total of 9,600 decision trees were automatically generated and evaluated. The trees correctly identified 79.3 percent of the software modules that had high development effort or faults, and the trees generated from the best parameter combinations correctly identified 88.4 percent of the modules on the average.

  20. Automatic sample changer control software for automation of neutron activation analysis process in Malaysian Nuclear Agency

    Science.gov (United States)

    Yussup, N.; Ibrahim, M. M.; Rahman, N. A. A.; Mokhtar, M.; Salim, N. A. A.; Soh@Shaari, S. C.; Azman, A.; Lombigit, L.; Azman, A.; Omar, S. A.

    2018-01-01

    Most of the procedures in neutron activation analysis (NAA) process that has been established in Malaysian Nuclear Agency (Nuclear Malaysia) since 1980s were performed manually. These manual procedures carried out by the NAA laboratory personnel are time consuming and inefficient especially for sample counting and measurement process. The sample needs to be changed and the measurement software needs to be setup for every one hour counting time. Both of these procedures are performed manually for every sample. Hence, an automatic sample changer system (ASC) that consists of hardware and software is developed to automate sample counting process for up to 30 samples consecutively. This paper describes the ASC control software for NAA process which is designed and developed to control the ASC hardware and call GammaVision software for sample measurement. The software is developed by using National Instrument LabVIEW development package.

  1. Analysis and recommendations for a reliable programming of software based safety systems

    International Nuclear Information System (INIS)

    Nunez McLeod, J.; Nunez McLeod, J.E.; Rivera, S.S.

    1997-01-01

    The present paper summarizes the results of several studies performed for the development of high software on i486 microprocessors, towards its utilization for control and safety systems for nuclear power plants. The work is based on software programmed in C language. Several recommendations oriented to high reliability software are analyzed, relating the requirements on high level language to its influence on assembler level. Several metrics are implemented, that allow for the quantification of the results achieved. New metrics were developed and other were adapted, in order to obtain more efficient indexes for the software description. Such metrics are helpful to visualize the adaptation of the software under development to the quality rules under use. A specific program developed to assist the reliability analyst on this quantification is also present in the paper. It performs the analysis of an executable program written in C language, disassembling it and evaluating its inter al structures. (author)

  2. Experimental analysis of specification language diversity impact on NPP software diversity

    International Nuclear Information System (INIS)

    Yoo, Chang Sik

    1999-02-01

    In order to increase computer system reliability, software fault tolerance methods have been adopted to some safety critical systems including NPP. Prevention of software common mode failure is very crucial problem in software fault tolerance, but the effective method for this problem is not found yet. In our research, to find out an effective method for prevention of software common mode failure, the impact of specification language diversity on NPP software diversity was examined experimentally. Three specification languages were used to compose three requirements specifications, and programmers made twelve product codes from the specifications. From the product codes analysis, using fault diversity criteria, we concluded that diverse specification language method would enhance program diversity through diversification of requirements specification imperfections

  3. BASTILLE - Better Analysis Software to Treat ILL Experiments - a unified, unifying approach to data reduction and analysis

    International Nuclear Information System (INIS)

    Johnson, M.

    2011-01-01

    Data reduction and analysis is a key component in the production of scientific results. If this component, like any other in the chain, is weak, the final output is compromised. The current situation for data reduction and analysis may be regarded as adequate, but it is variable, depending on the instrument, and should be improved. In particular the delivery of new and upgraded instruments in Millennium Phase I and those proposed for Phase II will bring new demands and challenges for software development. Failure to meet these challenges will hamper the exploitation of higher data rates and the delivery of new science. The proposed project is to provide a single, underpinning software infrastructure for data analysis, which would ensure: 1) a clear vision of software provision at ILL; 2) a clear role for the 'Computing for Science' Group (CS) in maintaining and developing the infrastructure and the codes; 3) a well-defined framework for recruiting and training CS staff; 4) ease and efficiency of development within a common, well-defined software environment; 5) safeguarding of key, existing software; and 6) ease of communication with other software like instrument control software to allow real-time data analysis and experiment control, or software from other institutes or sources

  4. EZ-Rhizo software: the gateway to root architecture analysis.

    Science.gov (United States)

    Armengaud, Patrick

    2009-02-01

    Plants are sessile organisms that have to cope with the available nutritional resources and environmental constraints in the place where they germinate. To fully exploit their nearby resources, they have evolved a highly plastic and responsive root system. Adaptations to limited nutrients include a wide range of specific root responses, e.g., the emergence of new root types, root branching or specific growth of lateral roots. These root system architecture (RSA) features are of utmost importance when investigating the underlying mechanisms by forward, reverse or quantitative genetic approaches. The EZ-Rhizo software was developed to facilitate such root measurements in a fast, simple and accurate way. The performances of EZ-Rhizo in providing about 20 primary and derived RSA parameters were illustrated by looking at natural variability across 23 Arabidopsis accessions. The different RSA profiles obtained from plants grown in favorable condition illustrated the wide reservoir of natural genetic resources underlying specific features of root growth. This diversity was used here to correlate the RSA genetic variability with growth, development and environmental properties of accession origins.

  5. The R software fundamentals of programming and statistical analysis

    CERN Document Server

    Lafaye de Micheaux, Pierre; Liquet, Benoit

    2013-01-01

    The contents of The R Software are presented so as to be both comprehensive and easy for the reader to use. Besides its application as a self-learning text, this book can support lectures on R at any level from beginner to advanced. This book can serve as a textbook on R for beginners as well as more advanced users, working on Windows, MacOs or Linux OSes. The first part of the book deals with the heart of the R language and its fundamental concepts, including data organization, import and export, various manipulations, documentation, plots, programming and maintenance.  The last chapter in this part deals with oriented object programming as well as interfacing R with C/C++ or Fortran, and contains a section on debugging techniques. This is followed by the second part of the book, which provides detailed explanations on how to perform many standard statistical analyses, mainly in the Biostatistics field. Topics from mathematical and statistical settings that are included are matrix operations, integration, o...

  6. Analysis on flexible manufacturing system layout using arena simulation software

    Science.gov (United States)

    Fadzly, M. K.; Saad, Mohd Sazli; Shayfull, Z.

    2017-09-01

    Flexible manufacturing system (FMS) was defined as highly automated group technology machine cell, consisting of a group of processing stations interconnected by an automated material handling and storage system, and controlled by an integrated computer system. FMS can produce parts or products are in the mid-volume, mid-variety production range. The layout system in FMS is an important criterion to design the FMS system to produce a part or product. This facility layout of an FMS involves the positioning of cells within given boundaries, so as to minimize the total projected travel time between cells. Defining the layout includes specifying the spatial coordinates of each cell, its orientation in either a horizontal or vertical position, and the location of its load or unloads point. There are many types of FMS layout such as In-line, loop ladder and robot centered cell layout. The research is concentrating on the design and optimization FMS layout. The final conclusion can be summarized that the objective to design and optimisation of FMS layout for this study is successful because the FMS In-line layout is the best layout based on effective time and cost using ARENA simulation software.

  7. Comparing Results from Constant Comparative and Computer Software Methods: A Reflection about Qualitative Data Analysis

    Science.gov (United States)

    Putten, Jim Vander; Nolen, Amanda L.

    2010-01-01

    This study compared qualitative research results obtained by manual constant comparative analysis with results obtained by computer software analysis of the same data. An investigated about issues of trustworthiness and accuracy ensued. Results indicated that the inductive constant comparative data analysis generated 51 codes and two coding levels…

  8. Standard gamma-ray spectra for the comparison of spectral analysis software

    International Nuclear Information System (INIS)

    Woods, S.; Hemingway, J.; Bowles, N.

    1997-01-01

    Three sets of standard γ-ray spectra have been produced for use in assessing the performance of spectral analysis software. The origin of and rationale behind the spectra are described. Nine representative analysis systems have been tested both in terms of component performance and in terms of overall performance and the problems encountered in the analysis are discussed. (author)

  9. Standard gamma-ray spectra for the comparison of spectral analysis software

    Energy Technology Data Exchange (ETDEWEB)

    Woods, S.; Hemingway, J.; Bowles, N. [and others

    1997-08-01

    Three sets of standard {gamma}-ray spectra have been produced for use in assessing the performance of spectral analysis software. The origin of and rationale behind the spectra are described. Nine representative analysis systems have been tested both in terms of component performance and in terms of overall performance and the problems encountered in the analysis are discussed. (author)

  10. Development of a gamma ray spectrometry software for neutron activation analysis using the open source concept

    International Nuclear Information System (INIS)

    Lucia, Silvio Rogerio de; Maihara, Vera Akiko; Menezes, Mario O. de

    2009-01-01

    In this work, a new software - SAANI (Instrumental Neutron Activation Analysis Software) was developed and used for gamma ray spectra analysis in the Neutron Activation Laboratory (LAN) of the Nuclear and Energetic Research Institute (IPEN-CNEN/SP). The software was developed to completely replace the old one - VISPECT. Besides the visual improvement in the user interface, the new software will allow the standardization of several procedures which are done nowadays in several different ways by each researcher, avoiding intermediate steps in the calculations. By using a modern programming language - Python, together with the graphical library Qt (by Trolltech), both multi-platform, the new software is able to run in Windows, Linux and other platforms. In addition to this, the new software has being designed to be extensible through plug-ins. In order to achieve the proposed initial scope, that is, completely replace the old software, SAANI has undergone several and different kinds of tests, using spectra from certified reference materials, standards and common spectra already analyzed by other software or that were used in international inter-comparisons. The results obtained by SAANI in all tests were considered very good. Some small discrepancies were found and after careful search and analysis, their source was identified as being an accuracy bug in the old software. Usability and robustness tests were conducted by installing SAANI in several laboratory computers and following them during daily utilization. The results of these tests also indicated that SAANI was ready to be used by all researchers in the LAN-IPEN. (author)

  11. Key attributes of the SAPHIRE risk and reliability analysis software for risk-informed probabilistic applications

    International Nuclear Information System (INIS)

    Smith, Curtis; Knudsen, James; Kvarfordt, Kellie; Wood, Ted

    2008-01-01

    The Idaho National Laboratory is a primary developer of probabilistic risk and reliability analysis (PRRA) tools, dating back over 35 years. Evolving from mainframe-based software, the current state-of-the-practice has led to the creation of the SAPHIRE software. Currently, agencies such as the Nuclear Regulatory Commission, the National Aeronautics and Aerospace Agency, the Department of Energy, and the Department of Defense use version 7 of the SAPHIRE software for many of their risk-informed activities. In order to better understand and appreciate the power of software as part of risk-informed applications, we need to recall that our current analysis methods and solution methods have built upon pioneering work done 30-40 years ago. We contrast this work with the current capabilities in the SAPHIRE analysis package. As part of this discussion, we provide information for both the typical features and special analysis capabilities, which are available. We also present the application and results typically found with state-of-the-practice PRRA models. By providing both a high-level and detailed look at the SAPHIRE software, we give a snapshot in time for the current use of software tools in a risk-informed decision arena

  12. HeteroGenius: A Framework for Hybrid Analysis of Heterogeneous Software Specifications

    Directory of Open Access Journals (Sweden)

    Manuel Giménez

    2014-01-01

    Full Text Available Nowadays, software artifacts are ubiquitous in our lives being an essential part of home appliances, cars, cell phones, and even in more critical activities like aeronautics and health sciences. In this context software failures may produce enormous losses, either economical or, in the worst case, in human lives. Software analysis is an area in software engineering concerned with the application of diverse techniques in order to prove the absence of errors in software pieces. In many cases different analysis techniques are applied by following specific methodological combinations that ensure better results. These interactions between tools are usually carried out at the user level and it is not supported by the tools. In this work we present HeteroGenius, a framework conceived to develop tools that allow users to perform hybrid analysis of heterogeneous software specifications. HeteroGenius was designed prioritising the possibility of adding new specification languages and analysis tools and enabling a synergic relation of the techniques under a graphical interface satisfying several well-known usability enhancement criteria. As a case-study we implemented the functionality of Dynamite on top of HeteroGenius.

  13. Planning and Analysis of the Company’s Financial Performances by Using a Software Simulation

    Directory of Open Access Journals (Sweden)

    Meri BOSHKOSKA

    2017-06-01

    Full Text Available Information Technology includes a wide range of software solution that helps managers in decision making processes in order to increase the company's business performance. Using software solution in financial analysis is a valuable tool for managers in the financial decision making process. The objective of the study was accomplished by developing Software that easily determines the financial performances of the company through integration of the analysis of financial indicators and DuPont profitability analysis model. Through this software, managers will be able to calculate the current financial state and visually analyze how their actions will affect the financial performance of the company. This will enable them to identify the best ways to improve the financial performance of the company. The software can perform a financial analysis and give a clear, useful overview of the current business performance and can also help in planning the growth of the company. The Software can also be implemented in educational purposes for students and managers in the field of financial management.

  14. Decision making model design for antivirus software selection using Factor Analysis and Analytical Hierarchy Process

    Directory of Open Access Journals (Sweden)

    Nurhayati Ai

    2018-01-01

    Full Text Available Virus spread increase significantly through the internet in 2017. One of the protection method is using antivirus software. The wide variety of antivirus software in the market tends to creating confusion among consumer. Selecting the right antivirus according to their needs has become difficult. This is the reason we conduct our research. We formulate a decision making model for antivirus software consumer. The model is constructed by using factor analysis and AHP method. First we spread questionnaires to consumer, then from those questionnaires we identified 16 variables that needs to be considered on selecting antivirus software. This 16 variables then divided into 5 factors by using factor analysis method in SPSS software. These five factors are security, performance, internal, time and capacity. To rank those factors we spread questionnaires to 6 IT expert then the data is analyzed using AHP method. The result is that performance factors gained the highest rank from all of the other factors. Thus, consumer can select antivirus software by judging the variables in the performance factors. Those variables are software loading speed, user friendly, no excessive memory use, thorough scanning, and scanning virus fast and accurately.

  15. Requirement analysis of the safety-critical software implementation for the nuclear power plant

    International Nuclear Information System (INIS)

    Chang, Hoon Seon; Jung, Jae Cheon; Kim, Jae Hack; Nam, Sang Ku; Kim, Hang Bae

    2005-01-01

    The safety critical software shall be implemented under the strict regulation and standards along with hardware qualification. In general, the safety critical software has been implemented using functional block language (FBL) and structured language like C in the real project. Software design shall comply with such characteristics as; modularity, simplicity, minimizing the use of sub-routine, and excluding the interrupt logic. To meet these prerequisites, we used the computer-aided software engineering (CASE) tool to substantiate the requirements traceability matrix that were manually developed using Word processors or Spreadsheets. And the coding standard and manual have been developed to confirm the quality of software development process, such as; readability, consistency, and maintainability in compliance with NUREG/CR-6463. System level preliminary hazard analysis (PHA) is performed by analyzing preliminary safety analysis report (PSAR) and FMEA document. The modularity concept is effectively implemented for the overall module configurations and functions using RTP software development tool. The response time imposed on the basis of the deterministic structure of the safety-critical software was measured

  16. STEM - software test and evaluation methods: fault detection using static analysis techniques

    International Nuclear Information System (INIS)

    Bishop, P.G.; Esp, D.G.

    1988-08-01

    STEM is a software reliability project with the objective of evaluating a number of fault detection and fault estimation methods which can be applied to high integrity software. This Report gives some interim results of applying both manual and computer-based static analysis techniques, in particular SPADE, to an early CERL version of the PODS software containing known faults. The main results of this study are that: The scope for thorough verification is determined by the quality of the design documentation; documentation defects become especially apparent when verification is attempted. For well-defined software, the thoroughness of SPADE-assisted verification for detecting a large class of faults was successfully demonstrated. For imprecisely-defined software (not recommended for high-integrity systems) the use of tools such as SPADE is difficult and inappropriate. Analysis and verification tools are helpful, through their reliability and thoroughness. However, they are designed to assist, not replace, a human in validating software. Manual inspection can still reveal errors (such as errors in specification and errors of transcription of systems constants) which current tools cannot detect. There is a need for tools to automatically detect typographical errors in system constants, for example by reporting outliers to patterns. To obtain the maximum benefit from advanced tools, they should be applied during software development (when verification problems can be detected and corrected) rather than retrospectively. (author)

  17. Surveillance Analysis Computer System (SACS) software requirements specification (SRS)

    International Nuclear Information System (INIS)

    Glasscock, J.A.; Flanagan, M.J.

    1995-09-01

    This document is the primary document establishing requirements for the Surveillance Analysis Computer System (SACS) Database, an Impact Level 3Q system. The purpose is to provide the customer and the performing organization with the requirements for the SACS Project

  18. Status of ion beam data analysis and simulation software

    Energy Technology Data Exchange (ETDEWEB)

    Rauhala, E. [Accelerator Laboratory, Department of Physics, University of Helsinki, P.O. Box 43, FIN-00014 Helsinki (Finland)]. E-mail: eero.rauhala@helsinki.fi; Barradas, N.P. [Instituto Tecnologico e Nuclear, Estrada Nacional No. 10, Apartado 21, 2686-953 Sacavem (Portugal); Centro de Fisica Nuclear da Universidade de Lisboa, Av. Prof. Gama Pinto 2, 1649-003 Lisbon (Portugal); Fazinic, S. [Rudjer Boskovic Institute, Bijenicka c.54, 10000 Zagreb (Croatia); Mayer, M. [Max-Planck-Institut fuer Plasmaphysik, EURATOM Association, Boltzmannstr. 2, D-85748 Garching (Germany); Szilagyi, E. [KFKI Research Institute for Particle and Nuclear Physics, P.O. Box 49, H-1525 Budapest (Hungary); Thompson, M. [Department of MS and E/Bard Hall 328, Cornell University, Ithaca, NY 14853 (United States)

    2006-03-15

    The status of ion beam data analysis codes dedicated to Rutherford backscattering, elastic recoil detection analysis and non-resonant nuclear reaction analysis, is reviewed. The most important methods and approaches employed are discussed. The stopping power and scattering cross-section databases used, the ion-target interaction physics, the experimental and detection system characteristics and the structure of samples all have a strong impact on the analytical results. The models and algorithms used by different codes are reviewed and discussed in detail. Limitations in existing codes and perspectives for further developments are presented. The importance of ascertaining the correctness and accuracy of different methods and codes used in ion beam data analysis is stressed.

  19. NASA's Software Safety Standard

    Science.gov (United States)

    Ramsay, Christopher M.

    2007-01-01

    NASA relies more and more on software to control, monitor, and verify its safety critical systems, facilities and operations. Since the 1960's there has hardly been a spacecraft launched that does not have a computer on board that will provide command and control services. There have been recent incidents where software has played a role in high-profile mission failures and hazardous incidents. For example, the Mars Orbiter, Mars Polar Lander, the DART (Demonstration of Autonomous Rendezvous Technology), and MER (Mars Exploration Rover) Spirit anomalies were all caused or contributed to by software. The Mission Control Centers for the Shuttle, ISS, and unmanned programs are highly dependant on software for data displays, analysis, and mission planning. Despite this growing dependence on software control and monitoring, there has been little to no consistent application of software safety practices and methodology to NASA's projects with safety critical software. Meanwhile, academia and private industry have been stepping forward with procedures and standards for safety critical systems and software, for example Dr. Nancy Leveson's book Safeware: System Safety and Computers. The NASA Software Safety Standard, originally published in 1997, was widely ignored due to its complexity and poor organization. It also focused on concepts rather than definite procedural requirements organized around a software project lifecycle. Led by NASA Headquarters Office of Safety and Mission Assurance, the NASA Software Safety Standard has recently undergone a significant update. This new standard provides the procedures and guidelines for evaluating a project for safety criticality and then lays out the minimum project lifecycle requirements to assure the software is created, operated, and maintained in the safest possible manner. This update of the standard clearly delineates the minimum set of software safety requirements for a project without detailing the implementation for those

  20. Business Analysis Skills and Techniques Among Software Developers from Various BPO Industries In Iloilo City, Philippines

    Directory of Open Access Journals (Sweden)

    Alex Ledonio

    2016-11-01

    Full Text Available In Iloilo City, Philippines, BPO Industry is booming and an upcoming Megaworld Business District situates a multitude of BPO companies. In this study the software developers of various BPO companies in Iloilo City were evaluated according to their competency on Business Analysis Skill and Techniques. A common misconception is that IT programmers should be detached to business analysis process and will just have to wait for the requirement solution to implement through software development. This study will gauge how much skills and knowledge they possess on the Business Analysis side. The result of the study reveals that software developers evaluated has an average rating on Business Analysis Tasks and Techniques. Respondents are lacking skills generally on business planning, business requirements analysis, and elicitation processes. These results can be used as a baseline data to recommend a necessary adjustment in school curricula.

  1. Proposals for software analysis of cost effectiveness and cost-benefit for optimisation of radiation protection

    International Nuclear Information System (INIS)

    Schieber, C.; Lombard, J.; Lefaure, C.

    1990-06-01

    The objective of this report is to present the principles of decision making software for radiation protection option, applying ALARA principle. The choice of optimum options is performed by applying the models of cost effectiveness and cost-benefit. Options of radiation protection are described by two indicators: a simple economic indicator: cost of radiation protection; and dosimetry indicator: collective dose related to protection. For both analyses the software enables sensitivity analysis. It would be possible to complete the software by integrating a module which would take into account combinations of two options since they are not independent

  2. Surveillance Analysis Computer System (SACS): Software requirements specification (SRS). Revision 2

    International Nuclear Information System (INIS)

    Glasscock, J.A.

    1995-01-01

    This document is the primary document establishing requirements for the Surveillance Analysis Computer System (SACS) database, an Impact Level 3Q system. SACS stores information on tank temperatures, surface levels, and interstitial liquid levels. This information is retrieved by the customer through a PC-based interface and is then available to a number of other software tools. The software requirements specification (SRS) describes the system requirements for the SACS Project, and follows the Standard Engineering Practices (WHC-CM-6-1), Software Practices (WHC-CM-3-10) and Quality Assurance (WHC-CM-4-2, QR 19.0) policies

  3. Capi text V.1--data analysis software for nailfold skin capillaroscopy.

    Science.gov (United States)

    Dobrev, Hristo P

    2007-01-01

    Nailfold skin capillaroscopy is a simple non-invasive method used to assess conditions of disturbed microcirculation such as Raynaud's phenomenon, acrocyanosis, perniones, connective tissue diseases, psoriasis, diabetes mellitus, neuropathy and vibration disease. To develop data analysis software aimed at assisting the documentation and analysis of a capillaroscopic investigation. SOFTWARE DESCRIPTION: The programme is based on a modular principle. The module "Nomenclatures" includes menus for the patients' data. The module "Examinations" includes menus for all general and specific aspects of the medical examination and capillaroscopic investigations. The modules "Settings" and "Information" include customization menus for the programme. The results of nailfold capillaroscopy can be printed in a short or expanded form. This software allows physicians to perform quick search by using various specified criteria and prepare analyses and reports. This software programme will facilitate any practitioner who performs nailfold skin capillaroscopy.

  4. Learning DHTMLX suite UI

    CERN Document Server

    Geske, Eli

    2013-01-01

    A fast-paced, example-based guide to learning DHTMLX.""Learning DHTMLX Suite UI"" is for web designers who have a basic knowledge of JavaScript and who are looking for powerful tools that will give them an extra edge in their own application development. This book is also useful for experienced developers who wish to get started with DHTMLX without going through the trouble of learning its quirks through trial and error. Readers are expected to have some knowledge of JavaScript, HTML, Document Object Model, and the ability to install a local web server.

  5. Development of the JFT-2M data analysis software system on the mainframe computer

    International Nuclear Information System (INIS)

    Matsuda, Toshiaki; Amagai, Akira; Suda, Shuji; Maemura, Katsumi; Hata, Ken-ichiro.

    1990-11-01

    We developed software system on the FACOM mainframe computer to analyze JFT-2M experimental data archived by JFT-2M data acquisition system. Then we can reduce and distribute the CPU load of the data acquisition system. And we can analyze JFT-2M experimental data by using complicated computational code with raw data, such as equilibrium calculation and transport analysis, and useful software package like SAS statistic package on the mainframe. (author)

  6. Automated Source Code Analysis to Identify and Remove Software Security Vulnerabilities: Case Studies on Java Programs

    OpenAIRE

    Natarajan Meghanathan

    2013-01-01

    The high-level contribution of this paper is to illustrate the development of generic solution strategies to remove software security vulnerabilities that could be identified using automated tools for source code analysis on software programs (developed in Java). We use the Source Code Analyzer and Audit Workbench automated tools, developed by HP Fortify Inc., for our testing purposes. We present case studies involving a file writer program embedded with features for password validation, and ...

  7. Software in military aviation and drone mishaps: Analysis and recommendations for the investigation process

    International Nuclear Information System (INIS)

    Foreman, Veronica L.; Favaró, Francesca M.; Saleh, Joseph H.; Johnson, Christopher W.

    2015-01-01

    Software plays a central role in military systems. It is also an important factor in many recent incidents and accidents. A safety gap is growing between our software-intensive technological capabilities and our understanding of the ways they can fail or lead to accidents. Traditional forms of accident investigation are poorly equipped to trace the sources of software failure, for instance software does not age in the same way that hardware components fail over time. As such, it can be hard to trace the causes of software failure or mechanisms by which it contributed to accidents back into the development and procurement chain to address the deeper, systemic causes of potential accidents. To identify some of these failure mechanisms, we examined the database of the Air Force Accident Investigation Board (AIB) and analyzed mishaps in which software was involved. Although we have chosen to focus on military aviation, many of the insights also apply to civil aviation. Our analysis led to several results and recommendations. Some were specific and related for example to specific shortcomings in the testing and validation of particular avionic subsystems. Others were broader in scope: for instance, we challenged both the investigation process (aspects of) and the findings in several cases, and we provided recommendations, technical and organizational, for improvements. We also identified important safety blind spots in the investigations with respect to software, whose contribution to the escalation of the adverse events was often neglected in the accident reports. These blind spots, we argued, constitute an important missed learning opportunity for improving accident prevention, and it is especially unfortunate at a time when Remotely Piloted Air Systems (RPAS) are being integrated into the National Airspace. Our findings support the growing recognition that the traditional notion of software failure as non-compliance with requirements is too limited to capture the

  8. Dtest Testing Software

    Science.gov (United States)

    Jain, Abhinandan; Cameron, Jonathan M.; Myint, Steven

    2013-01-01

    This software runs a suite of arbitrary software tests spanning various software languages and types of tests (unit level, system level, or file comparison tests). The dtest utility can be set to automate periodic testing of large suites of software, as well as running individual tests. It supports distributing multiple tests over multiple CPU cores, if available. The dtest tool is a utility program (written in Python) that scans through a directory (and its subdirectories) and finds all directories that match a certain pattern and then executes any tests in that directory as described in simple configuration files.

  9. Software ion scan functions in analysis of glycomic and lipidomic MS/MS datasets.

    Science.gov (United States)

    Haramija, Marko

    2018-03-01

    Hardware ion scan functions unique to tandem mass spectrometry (MS/MS) mode of data acquisition, such as precursor ion scan (PIS) and neutral loss scan (NLS), are important for selective extraction of key structural data from complex MS/MS spectra. However, their software counterparts, software ion scan (SIS) functions, are still not regularly available. Software ion scan functions can be easily coded for additional functionalities, such as software multiple precursor ion scan, software no ion scan, and software variable ion scan functions. These are often necessary, since they allow more efficient analysis of complex MS/MS datasets, often encountered in glycomics and lipidomics. Software ion scan functions can be easily coded by using modern script languages and can be independent of instrument manufacturer. Here we demonstrate the utility of SIS functions on a medium-size glycomic MS/MS dataset. Knowledge of sample properties, as well as of diagnostic and conditional diagnostic ions crucial for data analysis, was needed. Based on the tables constructed with the output data from the SIS functions performed, a detailed analysis of a complex MS/MS glycomic dataset could be carried out in a quick, accurate, and efficient manner. Glycomic research is progressing slowly, and with respect to the MS experiments, one of the key obstacles for moving forward is the lack of appropriate bioinformatic tools necessary for fast analysis of glycomic MS/MS datasets. Adding novel SIS functionalities to the glycomic MS/MS toolbox has a potential to significantly speed up the glycomic data analysis process. Similar tools are useful for analysis of lipidomic MS/MS datasets as well, as will be discussed briefly. Copyright © 2017 John Wiley & Sons, Ltd.

  10. Automated pre-processing and multivariate vibrational spectra analysis software for rapid results in clinical settings

    Science.gov (United States)

    Bhattacharjee, T.; Kumar, P.; Fillipe, L.

    2018-02-01

    Vibrational spectroscopy, especially FTIR and Raman, has shown enormous potential in disease diagnosis, especially in cancers. Their potential for detecting varied pathological conditions are regularly reported. However, to prove their applicability in clinics, large multi-center multi-national studies need to be undertaken; and these will result in enormous amount of data. A parallel effort to develop analytical methods, including user-friendly software that can quickly pre-process data and subject them to required multivariate analysis is warranted in order to obtain results in real time. This study reports a MATLAB based script that can automatically import data, preprocess spectra— interpolation, derivatives, normalization, and then carry out Principal Component Analysis (PCA) followed by Linear Discriminant Analysis (LDA) of the first 10 PCs; all with a single click. The software has been verified on data obtained from cell lines, animal models, and in vivo patient datasets, and gives results comparable to Minitab 16 software. The software can be used to import variety of file extensions, asc, .txt., .xls, and many others. Options to ignore noisy data, plot all possible graphs with PCA factors 1 to 5, and save loading factors, confusion matrices and other parameters are also present. The software can provide results for a dataset of 300 spectra within 0.01 s. We believe that the software will be vital not only in clinical trials using vibrational spectroscopic data, but also to obtain rapid results when these tools get translated into clinics.

  11. A field study on root cause analysis of defects in space software

    International Nuclear Information System (INIS)

    Silva, Nuno; Cunha, João Carlos; Vieira, Marco

    2017-01-01

    Critical systems, such as space systems, are developed under strict requirements envisaging high integrity in accordance to specific standards. For such software systems, an independent assessment is put into effect (Independent Software Verification and Validation – ISVV) after the regular development lifecycle and V&V activities, aiming at finding residual faults and raising confidence in the software. However, it has been observed that there is still a significant number of defects remaining at this stage, questioning the effectiveness of the previous engineering processes. This paper presents a root cause analysis of 1070 defects found in four space software projects during ISVV, by applying an improved Orthogonal Defect Classification (ODC) taxonomy and examining the defect types, triggers and impacts, in order to identify why they reached such a later stage in the development. The paper also puts forward proposals for modifications to both the software development (to prevent defects) and the V&V activities (to better detect defects) and an assessment methodology for future works on root cause analysis. - Highlights: • Root cause analysis of space software defects by using an enhanced ODC taxonomy. • Prioritization of the root causes according to the more important defect impacts. • Identification of improvements to systems engineering and development processes. • Improvements to V&V activities as means to reduce the occurrence of defects. • Generic process to achieve the defects root causes and the corrections suggestions.

  12. Scilab and Maxima Environment: Towards Free Software in Numerical Analysis

    Science.gov (United States)

    Mora, Angel; Galan, Jose Luis; Aguilera, Gabriel; Fernandez, Alvaro; Merida, Enrique; Rodriguez, Pedro

    2010-01-01

    In this work we will present the ScilabUMA environment we have developed as an alternative to Matlab. This environment connects Scilab (for numerical analysis) and Maxima (for symbolic computations). Furthermore, the developed interface is, in our opinion at least, as powerful as the interface of Matlab. (Contains 3 figures.)

  13. Scientific Computation Application Partnerships in Materials and Chemical Sciences, Charge Transfer and Charge Transport in Photoactivated Systems, Developing Electron-Correlated Methods for Excited State Structure and Dynamics in the NWChem Software Suite

    Energy Technology Data Exchange (ETDEWEB)

    Cramer, Christopher J. [Univ. of Minnesota, Minneapolis, MN (United States)

    2017-11-12

    Charge transfer and charge transport in photoactivated systems are fundamental processes that underlie solar energy capture, solar energy conversion, and photoactivated catalysis, both organometallic and enzymatic. We developed methods, algorithms, and software tools needed for reliable treatment of the underlying physics for charge transfer and charge transport, an undertaking with broad applicability to the goals of the fundamental-interaction component of the Department of Energy Office of Basic Energy Sciences and the exascale initiative of the Office of Advanced Scientific Computing Research.

  14. Software phantom with realistic speckle modeling for validation of image analysis methods in echocardiography

    Science.gov (United States)

    Law, Yuen C.; Tenbrinck, Daniel; Jiang, Xiaoyi; Kuhlen, Torsten

    2014-03-01

    Computer-assisted processing and interpretation of medical ultrasound images is one of the most challenging tasks within image analysis. Physical phenomena in ultrasonographic images, e.g., the characteristic speckle noise and shadowing effects, make the majority of standard methods from image analysis non optimal. Furthermore, validation of adapted computer vision methods proves to be difficult due to missing ground truth information. There is no widely accepted software phantom in the community and existing software phantoms are not exible enough to support the use of specific speckle models for different tissue types, e.g., muscle and fat tissue. In this work we propose an anatomical software phantom with a realistic speckle pattern simulation to _ll this gap and provide a exible tool for validation purposes in medical ultrasound image analysis. We discuss the generation of speckle patterns and perform statistical analysis of the simulated textures to obtain quantitative measures of the realism and accuracy regarding the resulting textures.

  15. Evaluation of static analysis tools used to assess software important to nuclear power plant safety

    Energy Technology Data Exchange (ETDEWEB)

    Ourghanlian, Alain [EDF Lab CHATOU, Simulation and Information Technologies for Power Generation Systems Department, EDF R and D, Cedex (France)

    2015-03-15

    We describe a comparative analysis of different tools used to assess safety-critical software used in nuclear power plants. To enhance the credibility of safety assessments and to optimize safety justification costs, Electricit e de France (EDF) investigates the use of methods and tools for source code semantic analysis, to obtain indisputable evidence and help assessors focus on the most critical issues. EDF has been using the PolySpace tool for more than 10 years. Currently, new industrial tools based on the same formal approach, Abstract Interpretation, are available. Practical experimentation with these new tools shows that the precision obtained on one of our shutdown systems software packages is substantially improved. In the first part of this article, we present the analysis principles of the tools used in our experimentation. In the second part, we present the main characteristics of protection-system software, and why these characteristics are well adapted for the new analysis tools.

  16. FieldTrip: Open source software for advanced analysis of MEG, EEG, and invasive electrophysiological data.

    Science.gov (United States)

    Oostenveld, Robert; Fries, Pascal; Maris, Eric; Schoffelen, Jan-Mathijs

    2011-01-01

    This paper describes FieldTrip, an open source software package that we developed for the analysis of MEG, EEG, and other electrophysiological data. The software is implemented as a MATLAB toolbox and includes a complete set of consistent and user-friendly high-level functions that allow experimental neuroscientists to analyze experimental data. It includes algorithms for simple and advanced analysis, such as time-frequency analysis using multitapers, source reconstruction using dipoles, distributed sources and beamformers, connectivity analysis, and nonparametric statistical permutation tests at the channel and source level. The implementation as toolbox allows the user to perform elaborate and structured analyses of large data sets using the MATLAB command line and batch scripting. Furthermore, users and developers can easily extend the functionality and implement new algorithms. The modular design facilitates the reuse in other software packages.

  17. A software tool for design of process monitoring and analysis systems

    DEFF Research Database (Denmark)

    Singh, Ravendra; Gernaey, Krist; Gani, Rafiqul

    2009-01-01

    A well designed process monitoring and analysis system is necessary to consistently achieve any predefined end product quality. Systematic computer aided methods and tools provide the means to design the necessary process monitoring and analysis systems and/or to validate any existing monitoring...... and analysis system. A software to achieve this has been developed. Two developed supporting tools for the design, a knowledge base (consisting of the process knowledge as well as the knowledge on measurement methods & tools) and a model library (consisting of the process operational models) have been extended...... rigorously and integrated with the user interface, which made the software more generic and applicable to a wide range of problems. The software for the design of a process monitoring and analysis system is presented and illustrated with a tablet manufacturing process example....

  18. Critical Factors Analysis for Offshore Software Development Success by Structural Equation Modeling

    Science.gov (United States)

    Wada, Yoshihisa; Tsuji, Hiroshi

    In order to analyze the success/failure factors in offshore software development service by the structural equation modeling, this paper proposes to follow two approaches together; domain knowledge based heuristic analysis and factor analysis based rational analysis. The former works for generating and verifying of hypothesis to find factors and causalities. The latter works for verifying factors introduced by theory to build the model without heuristics. Following the proposed combined approaches for the responses from skilled project managers of the questionnaire, this paper found that the vendor property has high causality for the success compared to software property and project property.

  19. Nucleonica. Web-based software tools for simulation and analysis

    International Nuclear Information System (INIS)

    Magill, J.; Dreher, R.; Soti, Z.

    2014-01-01

    The authors present a description of the Nucleonica web-based portal for simulation and analysis for a wide range of commonly encountered nuclear science applications. Advantages of a web-based approach include availability wherever there is internet access, intuitive user-friendly interface, remote access to high-power computing resources, and continual maintenance, improvement, and addition of tools and techniques common to the nuclear science industry. A description of the nuclear data resources, and some applications is given.

  20. HOW TO MAKE ANALYSIS WORK IN BUSINESS INTELLIGENCE SOFTWARE

    OpenAIRE

    Axner, Dr Lilit

    2009-01-01

    Competitive Intelligence (CI) has been defined by many authors. These definitions do have certain differences but all of them have a main common feature: They put the accent on the analysis. The most precise definition is given by the Society for Competitive Intelligence Professionals (SCIP): “A systematic and ethical program for gathering, analyzing, and managing external information that can affect your company’s plans, decisions, and operations”. Business Intelligence (BI) is much broader ...

  1. Statistical Analysis for Test Papers with Software SPSS

    Institute of Scientific and Technical Information of China (English)

    张燕君

    2012-01-01

      Test paper evaluation is an important work for the management of tests, which results are significant bases for scientific summation of teaching and learning. Taking an English test paper of high students’monthly examination as the object, it focuses on the interpretation of SPSS output concerning item and whole quantitative analysis of papers. By analyzing and evaluating the papers, it can be a feedback for teachers to check the students’progress and adjust their teaching process.

  2. A parallel and sensitive software tool for methylation analysis on multicore platforms.

    Science.gov (United States)

    Tárraga, Joaquín; Pérez, Mariano; Orduña, Juan M; Duato, José; Medina, Ignacio; Dopazo, Joaquín

    2015-10-01

    DNA methylation analysis suffers from very long processing time, as the advent of Next-Generation Sequencers has shifted the bottleneck of genomic studies from the sequencers that obtain the DNA samples to the software that performs the analysis of these samples. The existing software for methylation analysis does not seem to scale efficiently neither with the size of the dataset nor with the length of the reads to be analyzed. As it is expected that the sequencers will provide longer and longer reads in the near future, efficient and scalable methylation software should be developed. We present a new software tool, called HPG-Methyl, which efficiently maps bisulphite sequencing reads on DNA, analyzing DNA methylation. The strategy used by this software consists of leveraging the speed of the Burrows-Wheeler Transform to map a large number of DNA fragments (reads) rapidly, as well as the accuracy of the Smith-Waterman algorithm, which is exclusively employed to deal with the most ambiguous and shortest reads. Experimental results on platforms with Intel multicore processors show that HPG-Methyl significantly outperforms in both execution time and sensitivity state-of-the-art software such as Bismark, BS-Seeker or BSMAP, particularly for long bisulphite reads. Software in the form of C libraries and functions, together with instructions to compile and execute this software. Available by sftp to anonymous@clariano.uv.es (password 'anonymous'). juan.orduna@uv.es or jdopazo@cipf.es. © The Author 2015. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

  3. Evaluating Suit Fit Using Performance Degradation

    Science.gov (United States)

    Margerum, Sarah E.; Cowley, Matthew; Harvill, Lauren; Benson, Elizabeth; Rajulu, Sudhakar

    2011-01-01

    The Mark III suit has multiple sizes of suit components (arm, leg, and gloves) as well as sizing inserts to tailor the fit of the suit to an individual. This study sought to determine a way to identify the point an ideal suit fit transforms into a bad fit and how to quantify this breakdown using mobility-based physical performance data. This study examined the changes in human physical performance via degradation of the elbow and wrist range of motion of the planetary suit prototype (Mark III) with respect to changes in sizing and as well as how to apply that knowledge to suit sizing options and improvements in suit fit. The methods implemented in this study focused on changes in elbow and wrist mobility due to incremental suit sizing modifications. This incremental sizing was within a range that included both optimum and poor fit. Suited range of motion data was collected using a motion analysis system for nine isolated and functional tasks encompassing the elbow and wrist joints. A total of four subjects were tested with motions involving both arms simultaneously as well as the right arm only. The results were then compared across sizing configurations. The results of this study indicate that range of motion may be used as a viable parameter to quantify at what stage suit sizing causes a detriment in performance; however the human performance decrement appeared to be based on the interaction of multiple joints along a limb, not a single joint angle. The study was able to identify a preliminary method to quantify the impact of size on performance and to develop a means to gauge tolerances around optimal size. More work is needed to improve the assessment of optimal fit and to compensate for multiple joint interactions.

  4. Failure mode and effects analysis of software-based automation systems

    International Nuclear Information System (INIS)

    Haapanen, P.; Helminen, A.

    2002-08-01

    Failure mode and effects analysis (FMEA) is one of the well-known analysis methods having an established position in the traditional reliability analysis. The purpose of FMEA is to identify possible failure modes of the system components, evaluate their influences on system behaviour and propose proper countermeasures to suppress these effects. The generic nature of FMEA has enabled its wide use in various branches of industry reaching from business management to the design of spaceships. The popularity and diverse use of the analysis method has led to multiple interpretations, practices and standards presenting the same analysis method. FMEA is well understood at the systems and hardware levels, where the potential failure modes usually are known and the task is to analyse their effects on system behaviour. Nowadays, more and more system functions are realised on software level, which has aroused the urge to apply the FMEA methodology also on software based systems. Software failure modes generally are unknown - 'software modules do not fail, they only display incorrect behaviour' - and depend on dynamic behaviour of the application. These facts set special requirements on the FMEA of software based systems and make it difficult to realise. In this report the failure mode and effects analysis is studied for the use of reliability analysis of software-based systems. More precisely, the target system of FMEA is defined to be a safety-critical software-based automation application in a nuclear power plant, implemented on an industrial automation system platform. Through a literature study the report tries to clarify the intriguing questions related to the practical use of software failure mode and effects analysis. The study is a part of the research project 'Programmable Automation System Safety Integrity assessment (PASSI)', belonging to the Finnish Nuclear Safety Research Programme (FINNUS, 1999-2002). In the project various safety assessment methods and tools for

  5. WWW-based remote analysis framework for UniSampo and Shaman analysis software

    International Nuclear Information System (INIS)

    Aarnio, P.A.; Ala-Heikkilae, J.J.; Routti, J.T.; Nikkinen, M.T.

    2005-01-01

    UniSampo and Shaman are well-established analytical tools for gamma-ray spectrum analysis and the subsequent radionuclide identification. These tools are normally run locally on a Unix or Linux workstation in interactive mode. However, it is also possible to run them in batch/non-interactive mode by starting them with the correct parameters. This is how they are used in the standard analysis pipeline operation. This functionality also makes it possible to use them for remote operation over the network. Framework for running UniSampo and Shaman analysis using the standard WWW-protocol has been developed. A WWW-server receives requests from the client WWW-browser and runs the analysis software via a set of CGI-scripts. Authentication, input data transfer, and output and display of the final analysis results is all carried out using standard WWW-mechanisms. This WWW-framework can be utilized, for example, by organizations that have radioactivity surveillance stations in a wide area. A computer with a standard internet/intranet connection suffices for on-site analyses. (author)

  6. An analysis of unit tests of a flight software product line

    NARCIS (Netherlands)

    Ganesan, D.; Lindvall, M.; McComas, D.; Bartholomew, M.; Slegel, S.; Medina, B.; Krikhaar, R.; Verhoef, C.; Dharmalingam, G.; Montgomery, L.P.

    2013-01-01

    This paper presents an analysis of the unit testing approach developed and used by the Core Flight Software System (CFS) product line team at the NASA Goddard Space Flight Center (GSFC). The goal of the analysis is to understand, review, and recommend strategies for improving the CFS' existing unit

  7. An instructional guide for leaf color analysis using digital imaging software

    Science.gov (United States)

    Paula F. Murakami; Michelle R. Turner; Abby K. van den Berg; Paul G. Schaberg

    2005-01-01

    Digital color analysis has become an increasingly popular and cost-effective method utilized by resource managers and scientists for evaluating foliar nutrition and health in response to environmental stresses. We developed and tested a new method of digital image analysis that uses Scion Image or NIH image public domain software to quantify leaf color. This...

  8. Code Pulse: Software Assurance (SWA) Visual Analytics for Dynamic Analysis of Code

    Science.gov (United States)

    2014-09-01

    31 4.5.1 Market Analysis...competitive market analysis to assess the tool potential. The final transition targets were selected and expressed along with our research on the topic...public release milestones. Details of our testing methodology is in our Software Test Plan deliv- erable, CP- STP -0001. A summary of this approach is

  9. Millstone: software for multiplex microbial genome analysis and engineering.

    Science.gov (United States)

    Goodman, Daniel B; Kuznetsov, Gleb; Lajoie, Marc J; Ahern, Brian W; Napolitano, Michael G; Chen, Kevin Y; Chen, Changping; Church, George M

    2017-05-25

    Inexpensive DNA sequencing and advances in genome editing have made computational analysis a major rate-limiting step in adaptive laboratory evolution and microbial genome engineering. We describe Millstone, a web-based platform that automates genotype comparison and visualization for projects with up to hundreds of genomic samples. To enable iterative genome engineering, Millstone allows users to design oligonucleotide libraries and create successive versions of reference genomes. Millstone is open source and easily deployable to a cloud platform, local cluster, or desktop, making it a scalable solution for any lab.

  10. Software system safety

    Science.gov (United States)

    Uber, James G.

    1988-01-01

    Software itself is not hazardous, but since software and hardware share common interfaces there is an opportunity for software to create hazards. Further, these software systems are complex, and proven methods for the design, analysis, and measurement of software safety are not yet available. Some past software failures, future NASA software trends, software engineering methods, and tools and techniques for various software safety analyses are reviewed. Recommendations to NASA are made based on this review.

  11. Swift Burst Alert Telescope Data Products and Analysis Software

    International Nuclear Information System (INIS)

    Krimm, Hans A.; Barbier, Louis M.; Barthelmy, Scott D.; Cummings, Jay R.; Gehrels, Neil; Parsons, Ann M.; Tueller, Jack; Fenimore, Edward E.; Palmer, David M.; Hullinger, Derek D.; Markwardt, Craig B.

    2004-01-01

    The Burst Alert Telescope (BAT) on the Swift gamma-ray burst mission serves as the GRB trigger for Swift as well as a sensitive imaging telescope for the energy range of 15-150 keV. All BAT data products will be available to the astronomical community along with a complete set of analysis tools. Gamma-ray burst data products include rapid discovery messages delivered immediately via the GRB Coordinates Network, and event-by-event data from which light curves and spectra of the burst are generated. During nominal operations, the instrument provides accumulated survey histograms with 5-minute time sampling and appropriate energy resolution. These survey accumulations are analyzed in a pipeline to detect new sources and derive light curves of known sources. The 5-minute surveys will also be combined to produce the BAT all sky hard X-ray survey. In addition, the instrument accumulates high time resolution light curves of the brightest BAT sources in multiple energy bands, which are merged into a source light curve database on the ground. The BAT science data products and analysis tools will be described in this paper

  12. Software for statistical data analysis used in Higgs searches

    International Nuclear Information System (INIS)

    Gumpert, Christian; Moneta, Lorenzo; Cranmer, Kyle; Kreiss, Sven; Verkerke, Wouter

    2014-01-01

    The analysis and interpretation of data collected by the Large Hadron Collider (LHC) requires advanced statistical tools in order to quantify the agreement between observation and theoretical models. RooStats is a project providing a statistical framework for data analysis with the focus on discoveries, confidence intervals and combination of different measurements in both Bayesian and frequentist approaches. It employs the RooFit data modelling language where mathematical concepts such as variables, (probability density) functions and integrals are represented as C++ objects. RooStats and RooFit rely on the persistency technology of the ROOT framework. The usage of a common data format enables the concept of digital publishing of complicated likelihood functions. The statistical tools have been developed in close collaboration with the LHC experiments to ensure their applicability to real-life use cases. Numerous physics results have been produced using the RooStats tools, with the discovery of the Higgs boson by the ATLAS and CMS experiments being certainly the most popular among them. We will discuss tools currently used by LHC experiments to set exclusion limits, to derive confidence intervals and to estimate discovery significances based on frequentist statistics and the asymptotic behaviour of likelihood functions. Furthermore, new developments in RooStats and performance optimisation necessary to cope with complex models depending on more than 1000 variables will be reviewed

  13. Automated Structure Solution with the PHENIX Suite

    Energy Technology Data Exchange (ETDEWEB)

    Zwart, Peter H.; Zwart, Peter H.; Afonine, Pavel; Grosse-Kunstleve, Ralf W.; Hung, Li-Wei; Ioerger, Tom R.; McCoy, A.J.; McKee, Eric; Moriarty, Nigel; Read, Randy J.; Sacchettini, James C.; Sauter, Nicholas K.; Storoni, L.C.; Terwilliger, Tomas C.; Adams, Paul D.

    2008-06-09

    Significant time and effort are often required to solve and complete a macromolecular crystal structure. The development of automated computational methods for the analysis, solution and completion of crystallographic structures has the potential to produce minimally biased models in a short time without the need for manual intervention. The PHENIX software suite is a highly automated system for macromolecular structure determination that can rapidly arrive at an initial partial model of a structure without significant human intervention, given moderate resolution and good quality data. This achievement has been made possible by the development of new algorithms for structure determination, maximum-likelihood molecular replacement (PHASER), heavy-atom search (HySS), template and pattern-based automated model-building (RESOLVE, TEXTAL), automated macromolecular refinement (phenix.refine), and iterative model-building, density modification and refinement that can operate at moderate resolution (RESOLVE, AutoBuild). These algorithms are based on a highly integrated and comprehensive set of crystallographic libraries that have been built and made available to the community. The algorithms are tightly linked and made easily accessible to users through the PHENIX Wizards and the PHENIX GUI.

  14. Automated structure solution with the PHENIX suite

    Energy Technology Data Exchange (ETDEWEB)

    Terwilliger, Thomas C [Los Alamos National Laboratory; Zwart, Peter H [LBNL; Afonine, Pavel V [LBNL; Grosse - Kunstleve, Ralf W [LBNL

    2008-01-01

    Significant time and effort are often required to solve and complete a macromolecular crystal structure. The development of automated computational methods for the analysis, solution, and completion of crystallographic structures has the potential to produce minimally biased models in a short time without the need for manual intervention. The PHENIX software suite is a highly automated system for macromolecular structure determination that can rapidly arrive at an initial partial model of a structure without significant human intervention, given moderate resolution, and good quality data. This achievement has been made possible by the development of new algorithms for structure determination, maximum-likelihood molecular replacement (PHASER), heavy-atom search (HySS), template- and pattern-based automated model-building (RESOLVE, TEXTAL), automated macromolecular refinement (phenix. refine), and iterative model-building, density modification and refinement that can operate at moderate resolution (RESOLVE, AutoBuild). These algorithms are based on a highly integrated and comprehensive set of crystallographic libraries that have been built and made available to the community. The algorithms are tightly linked and made easily accessible to users through the PHENIX Wizards and the PHENIX GUI.

  15. PyPWA: A partial-wave/amplitude analysis software framework

    Science.gov (United States)

    Salgado, Carlos

    2016-05-01

    The PyPWA project aims to develop a software framework for Partial Wave and Amplitude Analysis of data; providing the user with software tools to identify resonances from multi-particle final states in photoproduction. Most of the code is written in Python. The software is divided into two main branches: one general-shell where amplitude's parameters (or any parametric model) are to be estimated from the data. This branch also includes software to produce simulated data-sets using the fitted amplitudes. A second branch contains a specific realization of the isobar model (with room to include Deck-type and other isobar model extensions) to perform PWA with an interface into the computer resources at Jefferson Lab. We are currently implementing parallelism and vectorization using the Intel's Xeon Phi family of coprocessors.

  16. A theoretical basis for the analysis of multiversion software subject to coincident errors

    Science.gov (United States)

    Eckhardt, D. E., Jr.; Lee, L. D.

    1985-01-01

    Fundamental to the development of redundant software techniques (known as fault-tolerant software) is an understanding of the impact of multiple joint occurrences of errors, referred to here as coincident errors. A theoretical basis for the study of redundant software is developed which: (1) provides a probabilistic framework for empirically evaluating the effectiveness of a general multiversion strategy when component versions are subject to coincident errors, and (2) permits an analytical study of the effects of these errors. An intensity function, called the intensity of coincident errors, has a central role in this analysis. This function describes the propensity of programmers to introduce design faults in such a way that software components fail together when executing in the application environment. A condition under which a multiversion system is a better strategy than relying on a single version is given.

  17. Software analysis by simulation for nuclear plant availability and safety goals

    International Nuclear Information System (INIS)

    Lapassat, A.M.; Segalard, J.; Salichon, M.; Le Meur, M.; Boulc'h, J.

    1988-01-01

    The microprocessors utilisation for monitoring protection and safety of nuclear reactor has become reality in the eighties. The authorities responsible for reactor safety systems have considered the necessity of the correct functioning of reactor control systems. The problems take off, when analysis of software, has led us in a first time to develop a completely software tool of verification and validation of programs and specifications. The CEA (French Atomic Energie Commission) responsible of reliable distributed techniques of nuclear plant discusses in this paper the software test and simulation tools used to analyse real-time software. The tool O.S.T. make part of a big program of help for the conception and the evaluation for the systems' fault tolerance which the European ESPRIT SMART no. 1609 (System Measurement and Architecture Technique) will be the kernel [fr

  18. Clementine sensor suite

    Energy Technology Data Exchange (ETDEWEB)

    Ledebuhr, A.G. [Lawrence Livermore National Lab., CA (United States)

    1994-11-15

    LLNL designed and built the suite of six miniaturized light-weight space-qualified sensors utilized in the Clementine mission. A major goal of the Clementine program was to demonstrate technologies originally developed for Ballistic Missile Defense Organization Programs. These sensors were modified to gather data from the moon. This overview presents each of these sensors and some preliminary on-orbit performance estimates. The basic subsystems of these sensors include optical baffles to reject off-axis stray light, light-weight ruggedized optical systems, filter wheel assemblies, radiation tolerant focal plane arrays, radiation hardened control and readout electronics and low mass and power mechanical cryogenic coolers for the infrared sensors. Descriptions of each sensor type are given along with design specifications, photographs and on-orbit data collected.

  19. The Implication of Using NVivo Software in Qualitative Data Analysis: Evidence-Based Reflections.

    Science.gov (United States)

    Zamawe, F C

    2015-03-01

    For a long time, electronic data analysis has been associated with quantitative methods. However, Computer Assisted Qualitative Data Analysis Software (CAQDAS) are increasingly being developed. Although the CAQDAS has been there for decades, very few qualitative health researchers report using it. This may be due to the difficulties that one has to go through to master the software and the misconceptions that are associated with using CAQDAS. While the issue of mastering CAQDAS has received ample attention, little has been done to address the misconceptions associated with CAQDAS. In this paper, the author reflects on his experience of interacting with one of the popular CAQDAS (NVivo) in order to provide evidence-based implications of using the software. The key message is that unlike statistical software, the main function of CAQDAS is not to analyse data but rather to aid the analysis process, which the researcher must always remain in control of. In other words, researchers must equally know that no software can analyse qualitative data. CAQDAS are basically data management packages, which support the researcher during analysis.

  20. DIII-D Thomson Scattering Diagnostic Data Acquisition, Processing and Analysis Software

    International Nuclear Information System (INIS)

    Middaugh, K.R.; Bray, B.D.; Hsieh, C.L.; McHarg, B.B.Jr.; Penaflor, B.G.

    1999-01-01

    One of the diagnostic systems critical to the success of the DIII-D tokamak experiment is the Thomson scattering diagnostic. This diagnostic is unique in that it measures local electron temperature and density: (1) at multiple locations within the tokamak plasma; and (2) at different times throughout the plasma duration. Thomson ''raw'' data are digitized signals of scattered light, measured at different times and locations, from the laser beam paths fired into the plasma. Real-time acquisition of this data is performed by specialized hardware. Once obtained, the raw data are processed into meaningful temperature and density values which can be analyzed for measurement quality. This paper will provide an overview of the entire Thomson scattering diagnostic software and will focus on the data acquisition, processing, and analysis software implementation. The software falls into three general categories: (1) Set-up and Control: Initializes and controls all Thomson hardware and software, synchronizes with other DIII-D computers, and invokes other Thomson software as appropriate. (2) Data Acquisition and Processing: Obtains raw measured data from memory and processes it into temperature and density values. (3) Analysis: Provides a graphical user interface in which to perform analysis and sophisticated plotting of analysis parameters

  1. Software Tools for Robust Analysis of High-Dimensional Data

    Directory of Open Access Journals (Sweden)

    Valentin Todorov

    2014-06-01

    Full Text Available The present work discusses robust multivariate methods specifically designed for highdimensions. Their implementation in R is presented and their application is illustratedon examples. The first group are algorithms for outlier detection, already introducedelsewhere and implemented in other packages. The value added of the new package isthat all methods follow the same design pattern and thus can use the same graphicaland diagnostic tools. The next topic covered is sparse principal components including anobject oriented interface to the standard method proposed by Zou, Hastie, and Tibshirani(2006 and the robust one proposed by Croux, Filzmoser, and Fritz (2013. Robust partialleast squares (see Hubert and Vanden Branden 2003 as well as partial least squares fordiscriminant analysis conclude the scope of the new package.

  2. Syndrome identification based on 2D analysis software.

    Science.gov (United States)

    Boehringer, Stefan; Vollmar, Tobias; Tasse, Christiane; Wurtz, Rolf P; Gillessen-Kaesbach, Gabriele; Horsthemke, Bernhard; Wieczorek, Dagmar

    2006-10-01

    Clinical evaluation of children with developmental delay continues to present a challenge to the clinicians. In many cases, the face provides important information to diagnose a condition. However, database support with respect to facial traits is limited at present. Computer-based analyses of 2D and 3D representations of faces have been developed, but it is unclear how well a larger number of conditions can be handled by such systems. We have therefore analysed 2D pictures of patients each being affected with one of 10 syndromes (fragile X syndrome; Cornelia de Lange syndrome; Williams-Beuren syndrome; Prader-Willi syndrome; Mucopolysaccharidosis type III; Cri-du-chat syndrome; Smith-Lemli-Opitz syndrome; Sotos syndrome; Microdeletion 22q11.2; Noonan syndrome). We can show that a classification accuracy of >75% can be achieved for a computer-based diagnosis among the 10 syndromes, which is about the same accuracy achieved for five syndromes in a previous study. Pairwise discrimination of syndromes ranges from 80 to 99%. Furthermore, we can demonstrate that the criteria used by the computer decisions match clinical observations in many cases. These findings indicate that computer-based picture analysis might be a helpful addition to existing database systems, which are meant to assist in syndrome diagnosis, especially as data acquisition is straightforward and involves off-the-shelf digital camera equipment.

  3. HDX Workbench: Software for the Analysis of H/D Exchange MS Data

    Science.gov (United States)

    Pascal, Bruce D.; Willis, Scooter; Lauer, Janelle L.; Landgraf, Rachelle R.; West, Graham M.; Marciano, David; Novick, Scott; Goswami, Devrishi; Chalmers, Michael J.; Griffin, Patrick R.

    2012-09-01

    Hydrogen/deuterium exchange mass spectrometry (HDX-MS) is an established method for the interrogation of protein conformation and dynamics. While the data analysis challenge of HDX-MS has been addressed by a number of software packages, new computational tools are needed to keep pace with the improved methods and throughput of this technique. To address these needs, we report an integrated desktop program titled HDX Workbench, which facilitates automation, management, visualization, and statistical cross-comparison of large HDX data sets. Using the software, validated data analysis can be achieved at the rate of generation. The application is available at the project home page http://hdx.florida.scripps.edu.

  4. Explicet: graphical user interface software for metadata-driven management, analysis and visualization of microbiome data.

    Science.gov (United States)

    Robertson, Charles E; Harris, J Kirk; Wagner, Brandie D; Granger, David; Browne, Kathy; Tatem, Beth; Feazel, Leah M; Park, Kristin; Pace, Norman R; Frank, Daniel N

    2013-12-01

    Studies of the human microbiome, and microbial community ecology in general, have blossomed of late and are now a burgeoning source of exciting research findings. Along with the advent of next-generation sequencing platforms, which have dramatically increased the scope of microbiome-related projects, several high-performance sequence analysis pipelines (e.g. QIIME, MOTHUR, VAMPS) are now available to investigators for microbiome analysis. The subject of our manuscript, the graphical user interface-based Explicet software package, fills a previously unmet need for a robust, yet intuitive means of integrating the outputs of the software pipelines with user-specified metadata and then visualizing the combined data.

  5. Software systems for processing and analysis at the NOVA high-energy laser facility

    International Nuclear Information System (INIS)

    Auerbach, J.M.; Montgomery, D.S.; McCauley, E.W.; Stone, G.F.

    1986-01-01

    A typical laser interaction experiment at the NOVA high-energy laser facility produces in excess of 20 Mbytes of digitized data. Extensive processing and analysis of this raw data from a wide variety of instruments is necessary to produce results that can be readily used to interpret the experiment. Using VAX-based computer hardware, software systems have been set up to convert the digitized instrument output to physics quantities describing the experiment. A relational data-base management system is used to coordinate all levels of processing and analysis. Software development emphasizes structured design, flexibility, automation, and ease of use

  6. Public-domain software for root image analysis

    Directory of Open Access Journals (Sweden)

    Mirian Cristina Gomes Costa

    2014-10-01

    Full Text Available In the search for high efficiency in root studies, computational systems have been developed to analyze digital images. ImageJ and Safira are public-domain systems that may be used for image analysis of washed roots. However, differences in root properties measured using ImageJ and Safira are supposed. This study compared values of root length and surface area obtained with public-domain systems with values obtained by a reference method. Root samples were collected in a banana plantation in an area of a shallower Typic Carbonatic Haplic Cambisol (CXk, and an area of a deeper Typic Haplic Ta Eutrophic Cambisol (CXve, at six depths in five replications. Root images were digitized and the systems ImageJ and Safira used to determine root length and surface area. The line-intersect method modified by Tennant was used as reference; values of root length and surface area measured with the different systems were analyzed by Pearson's correlation coefficient and compared by the confidence interval and t-test. Both systems ImageJ and Safira had positive correlation coefficients with the reference method for root length and surface area data in CXk and CXve. The correlation coefficient ranged from 0.54 to 0.80, with lowest value observed for ImageJ in the measurement of surface area of roots sampled in CXve. The IC (95 % revealed that root length measurements with Safira did not differ from that with the reference method in CXk (-77.3 to 244.0 mm. Regarding surface area measurements, Safira did not differ from the reference method for samples collected in CXk (-530.6 to 565.8 mm² as well as in CXve (-4231 to 612.1 mm². However, measurements with ImageJ were different from those obtained by the reference method, underestimating length and surface area in samples collected in CXk and CXve. Both ImageJ and Safira allow an identification of increases or decreases in root length and surface area. However, Safira results for root length and surface area are

  7. The use of prime implicants in dependability analysis of software controlled systems

    Energy Technology Data Exchange (ETDEWEB)

    Yau, Michael; Apostolakis, George; Guarro, Sergio

    1998-11-01

    The behavior of software controlled systems is usually non-binary and dynamic. It is, thus, convenient to employ multi-valued logic to model these systems. Multi-valued logic functions can be used to represent the functional and temporal relationships between the software and hardware components. The resulting multi-valued logic model can be analyzed deductively, i.e. by tracking causality in reverse from undesirable 'top' events to identify faults that may be present in the system. The result of this deductive analysis is a set of prime implicants for a user-defined system top event. The prime implicants represent all the combinations of basic component conditions and software input conditions that may result in the top event; they are the extension to multi-valued logic of the concept of minimal cut sets that is used routinely in the analysis of binary fault trees. This paper discusses why prime implicants are needed in the dependability analysis of software controlled systems, how they are generated, and how they are used to identify faults in a software controlled system.

  8. REVEAL - A tool for rule driven analysis of safety critical software

    International Nuclear Information System (INIS)

    Miedl, H.; Kersken, M.

    1998-01-01

    As the determination of ultrahigh reliability figures for safety critical software is hardly possible, national and international guidelines and standards give mainly requirements for the qualitative evaluation of software. An analysis whether all these requirements are fulfilled is time and effort consuming and prone to errors, if performed manually by analysts, and should instead be dedicated to tools as far as possible. There are many ''general-purpose'' software analysis tools, both static and dynamic, which help analyzing the source code. However, they are not designed to assess the adherence to specific requirements of guidelines and standards in the nuclear field. Against the background of the development of I and C systems in the nuclear field which are based on digital techniques and implemented in high level language, it is essential that the assessor or licenser has a tool with which he can automatically and uniformly qualify as many aspects as possible of the high level language software. For this purpose the software analysis tool REVEAL has been developed at ISTec and the Halden Reactor Project. (author)

  9. The use of prime implicants in dependability analysis of software controlled systems

    International Nuclear Information System (INIS)

    Yau, Michael; Apostolakis, George; Guarro, Sergio

    1998-01-01

    The behavior of software controlled systems is usually non-binary and dynamic. It is, thus, convenient to employ multi-valued logic to model these systems. Multi-valued logic functions can be used to represent the functional and temporal relationships between the software and hardware components. The resulting multi-valued logic model can be analyzed deductively, i.e. by tracking causality in reverse from undesirable 'top' events to identify faults that may be present in the system. The result of this deductive analysis is a set of prime implicants for a user-defined system top event. The prime implicants represent all the combinations of basic component conditions and software input conditions that may result in the top event; they are the extension to multi-valued logic of the concept of minimal cut sets that is used routinely in the analysis of binary fault trees. This paper discusses why prime implicants are needed in the dependability analysis of software controlled systems, how they are generated, and how they are used to identify faults in a software controlled system

  10. A Systematic Analysis of Functional Safety Certification Practices in Industrial Robot Software Development

    Directory of Open Access Journals (Sweden)

    Tong Xie

    2017-01-01

    Full Text Available For decades, industry robotics have delivered on the promise of speed, efficiency and productivity. The last several years have seen a sharp resurgence in the orders of industrial robots in China, and the areas addressed within industrial robotics has extended into safety-critical domains. However, safety standards have not yet been implemented widely in academia and engineering applications, particularly in robot software development. This paper presents a systematic analysis of functional safety certification practices in software development for the safety-critical software of industrial robots, to identify the safety certification practices used for the development of industrial robots in China and how these practices comply with the safety standard requirements. Reviewing from Chinese academic papers, our research shows that safety standards are barely used in software development of industrial robot. The majority of the papers propose various solutions to achieve safety, but only about two thirds of the papers refer to non-standardized approaches that mainly address the systematic level rather than the software development level. In addition, our research shows that with the development of artificial intelligent, an emerging field is still on the quest for standardized and suitable approaches to develop safety-critical software.

  11. Software-assisted small bowel motility analysis using free-breathing MRI: feasibility study.

    Science.gov (United States)

    Bickelhaupt, Sebastian; Froehlich, Johannes M; Cattin, Roger; Raible, Stephan; Bouquet, Hanspeter; Bill, Urs; Patak, Michael A

    2014-01-01

    To validate a software prototype allowing for small bowel motility analysis in free breathing by comparing it to manual measurements. In all, 25 patients (15 male, 10 female; mean age 39 years) were included in this Institutional Review Board-approved, retrospective study. Magnetic resonance imaging (MRI) was performed on a 1.5T system after standardized preparation acquiring motility sequences in free breathing over 69-84 seconds. Small bowel motility was analyzed manually and with the software. Functional parameters, measurement time, and reproducibility were compared using the coefficient of variance and paired Student's t-test. Correlation was analyzed using Pearson's correlation coefficient and linear regression. The 25 segments were analyzed twice both by hand and using the software with automatic breathing correction. All assessed parameters significantly correlated between the methods (P software (3.90%, standard deviation [SD] ± 5.69) than manual examinations (9.77%, SD ± 11.08). The time needed was significantly less (P software (4.52 minutes, SD ± 1.58) compared to manual measurement, lasting 17.48 minutes for manual (SD ± 1.75 minutes). The use of the software proves reliable and faster small bowel motility measurements in free-breathing MRI compared to manual analyses. The new technique allows for analyses of prolonged sequences acquired in free breathing, improving the informative value of the examinations by amplifying the evaluable data. Copyright © 2013 Wiley Periodicals, Inc.

  12. A coverage and slicing dependencies analysis for seeking software security defects.

    Science.gov (United States)

    He, Hui; Zhang, Dongyan; Liu, Min; Zhang, Weizhe; Gao, Dongmin

    2014-01-01

    Software security defects have a serious impact on the software quality and reliability. It is a major hidden danger for the operation of a system that a software system has some security flaws. When the scale of the software increases, its vulnerability has becoming much more difficult to find out. Once these vulnerabilities are exploited, it may lead to great loss. In this situation, the concept of Software Assurance is carried out by some experts. And the automated fault localization technique is a part of the research of Software Assurance. Currently, automated fault localization method includes coverage based fault localization (CBFL) and program slicing. Both of the methods have their own location advantages and defects. In this paper, we have put forward a new method, named Reverse Data Dependence Analysis Model, which integrates the two methods by analyzing the program structure. On this basis, we finally proposed a new automated fault localization method. This method not only is automation lossless but also changes the basic location unit into single sentence, which makes the location effect more accurate. Through several experiments, we proved that our method is more effective. Furthermore, we analyzed the effectiveness among these existing methods and different faults.

  13. The Software Ontology (SWO): a resource for reproducibility in biomedical data analysis, curation and digital preservation.

    Science.gov (United States)

    Malone, James; Brown, Andy; Lister, Allyson L; Ison, Jon; Hull, Duncan; Parkinson, Helen; Stevens, Robert

    2014-01-01

    Biomedical ontologists to date have concentrated on ontological descriptions of biomedical entities such as gene products and their attributes, phenotypes and so on. Recently, effort has diversified to descriptions of the laboratory investigations by which these entities were produced. However, much biological insight is gained from the analysis of the data produced from these investigations, and there is a lack of adequate descriptions of the wide range of software that are central to bioinformatics. We need to describe how data are analyzed for discovery, audit trails, provenance and reproducibility. The Software Ontology (SWO) is a description of software used to store, manage and analyze data. Input to the SWO has come from beyond the life sciences, but its main focus is the life sciences. We used agile techniques to gather input for the SWO and keep engagement with our users. The result is an ontology that meets the needs of a broad range of users by describing software, its information processing tasks, data inputs and outputs, data formats versions and so on. Recently, the SWO has incorporated EDAM, a vocabulary for describing data and related concepts in bioinformatics. The SWO is currently being used to describe software used in multiple biomedical applications. The SWO is another element of the biomedical ontology landscape that is necessary for the description of biomedical entities and how they were discovered. An ontology of software used to analyze data produced by investigations in the life sciences can be made in such a way that it covers the important features requested and prioritized by its users. The SWO thus fits into the landscape of biomedical ontologies and is produced using techniques designed to keep it in line with user's needs. The Software Ontology is available under an Apache 2.0 license at http://theswo.sourceforge.net/; the Software Ontology blog can be read at http://softwareontology.wordpress.com.

  14. Computer Support of Semantic Text Analysis of a Technical Specification on Designing Software

    OpenAIRE

    Zaboleeva-Zotova, Alla; Orlova, Yulia

    2009-01-01

    The given work is devoted to development of the computer-aided system of semantic text analysis of a technical specification. The purpose of this work is to increase efficiency of software engineering based on automation of semantic text analysis of a technical specification. In work it is offered and investigated a technique of the text analysis of a technical specification is submitted, the expanded fuzzy attribute grammar of a technical specification, intended for formaliza...

  15. NASGRO(registered trademark): Fracture Mechanics and Fatigue Crack Growth Analysis Software

    Science.gov (United States)

    Forman, Royce; Shivakumar, V.; Mettu, Sambi; Beek, Joachim; Williams, Leonard; Yeh, Feng; McClung, Craig; Cardinal, Joe

    2004-01-01

    This viewgraph presentation describes NASGRO, which is a fracture mechanics and fatigue crack growth analysis software package that is used to reduce risk of fracture in Space Shuttles. The contents include: 1) Consequences of Fracture; 2) NASA Fracture Control Requirements; 3) NASGRO Reduces Risk; 4) NASGRO Use Inside NASA; 5) NASGRO Components: Crack Growth Module; 6) NASGRO Components:Material Property Module; 7) Typical NASGRO analysis: Crack growth or component life calculation; and 8) NASGRO Sample Application: Orbiter feedline flowliner crack analysis.

  16. Featureous: infrastructure for feature-centric analysis of object-oriented software

    DEFF Research Database (Denmark)

    Olszak, Andrzej; Jørgensen, Bo Nørregaard

    2010-01-01

    The decentralized nature of collaborations between objects in object-oriented software makes it difficult to understand how user-observable program features are implemented and how their implementations relate to each other. It is worthwhile to improve this situation, since feature-centric program...... understanding and modification are essential during software evolution and maintenance. In this paper, we present an infrastructure built on top of the NetBeans IDE called Featureous that allows for rapid construction of tools for feature-centric analysis of object-oriented software. Our infrastructure...... encompasses a lightweight feature location mechanism, a number of analytical views and an API allowing for addition of third-party extensions. To form a common conceptual framework for future feature-centric extensions, we propose to structure feature centric analysis along three dimensions: perspective...

  17. Thermal-hydraulic software development for nuclear waste transportation cask design and analysis

    International Nuclear Information System (INIS)

    Brown, N.N.; Burns, S.P.; Gianoulakis, S.E.; Klein, D.E.

    1991-01-01

    This paper describes the development of a state-of-the-art thermal-hydraulic software package intended for spent fuel and high-level nuclear waste transportation cask design and analysis. The objectives of this software development effort are threefold: (1) to take advantage of advancements in computer hardware and software to provide a more efficient user interface, (2) to provide a tool for reducing inefficient conservatism in spent fuel and high-level waste shipping cask design by including convection as well as conduction and radiation heat transfer modeling capabilities, and (3) to provide a thermal-hydraulic analysis package which is developed under a rigorous quality assurance program established at Sandia National Laboratories. 20 refs., 5 figs., 2 tabs

  18. ImatraNMR: Novel software for batch integration and analysis of quantitative NMR spectra

    Science.gov (United States)

    Mäkelä, A. V.; Heikkilä, O.; Kilpeläinen, I.; Heikkinen, S.

    2011-08-01

    Quantitative NMR spectroscopy is a useful and important tool for analysis of various mixtures. Recently, in addition of traditional quantitative 1D 1H and 13C NMR methods, a variety of pulse sequences aimed for quantitative or semiquantitative analysis have been developed. To obtain actual usable results from quantitative spectra, they must be processed and analyzed with suitable software. Currently, there are many processing packages available from spectrometer manufacturers and third party developers, and most of them are capable of analyzing and integration of quantitative spectra. However, they are mainly aimed for processing single or few spectra, and are slow and difficult to use when large numbers of spectra and signals are being analyzed, even when using pre-saved integration areas or custom scripting features. In this article, we present a novel software, ImatraNMR, designed for batch analysis of quantitative spectra. In addition to capability of analyzing large number of spectra, it provides results in text and CSV formats, allowing further data-analysis using spreadsheet programs or general analysis programs, such as Matlab. The software is written with Java, and thus it should run in any platform capable of providing Java Runtime Environment version 1.6 or newer, however, currently it has only been tested with Windows and Linux (Ubuntu 10.04). The software is free for non-commercial use, and is provided with source code upon request.

  19. The application of soft X-ray microscopy to the in-situ analysis of sporopollenin/sporinite in a rank variable suite of organic rich sediments

    Energy Technology Data Exchange (ETDEWEB)

    Cody, G.D.; Botto, R.E. [Argonne National Lab., IL (United States). Chemistry Div.; Ade, H. [North Carolina State Univ., Raleigh, NC (United States). Dept. of Physics; Wirick, S. [State Univ. of New York, Stony Brook, NY (United States). Dept. of Physics

    1997-07-01

    Soft X-ray imaging and carbon near edge absorption fine structure spectroscopy (C-NEXAFS) has been used for the in-situ analysis of sporinite in a rank variable suite of organic rich sediments extending from recent up to high volatile A bituminous coal. The acquisition of chemically based images (contrast based on the 1s - 1{pi}* transition of unsaturated carbon), revealed a homogeneous chemical structure in the spore exine. C-NEXAFS microanalysis indicates chemical structural evolution in sporopollenin/sporinite with increases in maturation. The most significant change in the C-NEXAFS spectrum is an increase in unsaturated carbon, presumably aromatic, with rank. The rate of aromatization in sporinite exceeds that of the surrounding vitrinite. Increases in the concentration of unsaturated carbon are compensated by losses of aliphatic and hydroxylated aliphatic carbon components. Carboxyl groups are present in low and variable concentrations. Absorption due to carboxyl persists in the most mature specimen in this series, a high volatile A rank coal. The reactions which drive sporopollenin chemical structural evolution during diagenesis presumably involve dehydration, Diels-Alder cyclo-addition, and dehydrogenation reactions which ultimately lead to a progressively aromatized bio/geopolymer.

  20. Development of Software for Automatic Analysis of Intervention in the Field of Homeopathy.

    Science.gov (United States)

    Jain, Rajesh Kumar; Goyal, Shagun; Bhat, Sushma N; Rao, Srinath; Sakthidharan, Vivek; Kumar, Prasanna; Sajan, Kannanaikal Rappayi; Jindal, Sameer Kumar; Jindal, Ghanshyam D

    2018-05-01

    To study the effect of homeopathic medicines (in higher potencies) in normal subjects, Peripheral Pulse Analyzer (PPA) has been used to record physiologic variability parameters before and after administration of the medicine/placebo in 210 normal subjects. Data have been acquired in seven rounds; placebo was administered in rounds 1 and 2 and medicine in potencies 6, 30, 200, 1 M, and 10 M was administered in rounds 3 to 7, respectively. Five different medicines in the said potencies were given to a group of around 40 subjects each. Although processing of data required human intervention, a software application has been developed to analyze the processed data and detect the response to eliminate the undue delay as well as human bias in subjective analysis. This utility named Automatic Analysis of Intervention in the Field of Homeopathy is run on the processed PPA data and the outcome has been compared with the manual analysis. The application software uses adaptive threshold based on statistics for detecting responses in contrast to fixed threshold used in manual analysis. The automatic analysis has detected 12.96% higher responses than subjective analysis. Higher response rates have been manually verified to be true positive. This indicates robustness of the application software. The automatic analysis software was run on another set of pulse harmonic parameters derived from the same data set to study cardiovascular susceptibility and 385 responses were detected in contrast to 272 of variability parameters. It was observed that 65% of the subjects, eliciting response, were common. This not only validates the software utility for giving consistent yield but also reveals the certainty of the response. This development may lead to electronic proving of homeopathic medicines (e-proving).