WorldWideScience

Sample records for analyser based spectromicroscope

  1. MEPHISTO spectromicroscope reaches 20 nm lateral resolution

    Science.gov (United States)

    De Stasio, Gelsomina; Perfetti, Luca; Gilbert, B.; Fauchoux, O.; Capozi, M.; Perfetti, P.; Margaritondo, G.; Tonner, B. P.

    1999-03-01

    The recently described tests of the synchrotron imaging photoelectron spectromicroscope MEPHISTO (Microscope à Emission de PHotoélectrons par Illumination Synchrotronique de Type Onduleur) were complemented by further resolution improvements and tests, which brought the lateral resolution down to 20 nm. Images and line plot profiles demonstrate such performance.

  2. Spectromicroscopic characterisation of the formation of complex interfaces

    OpenAIRE

    Maier, Florian C.

    2011-01-01

    Within the framework of this thesis the mechanisms of growth and reorganisation of surfaces within the first few layers were investigated that are the basis for the fabrication of high quality thin films and interfaces. Two model systems, PTCDA/Ag(111) and CdSe/ZnSe quantum dots (QD), were chosen to study such processes in detail and to demonstrate the power and improvements of the aberration corrected spectromicroscope SMART [1] simultaneously. The measurements benefit especially from the en...

  3. Unsupervised Data Mining in nanoscale X-ray Spectro-Microscopic Study of NdFeB Magnet

    Science.gov (United States)

    Duan, Xiaoyue; Yang, Feifei; Antono, Erin; Yang, Wenge; Pianetta, Piero; Ermon, Stefano; Mehta, Apurva; Liu, Yijin

    2016-01-01

    Novel developments in X-ray based spectro-microscopic characterization techniques have increased the rate of acquisition of spatially resolved spectroscopic data by several orders of magnitude over what was possible a few years ago. This accelerated data acquisition, with high spatial resolution at nanoscale and sensitivity to subtle differences in chemistry and atomic structure, provides a unique opportunity to investigate hierarchically complex and structurally heterogeneous systems found in functional devices and materials systems. However, handling and analyzing the large volume data generated poses significant challenges. Here we apply an unsupervised data-mining algorithm known as DBSCAN to study a rare-earth element based permanent magnet material, Nd2Fe14B. We are able to reduce a large spectro-microscopic dataset of over 300,000 spectra to 3, preserving much of the underlying information. Scientists can easily and quickly analyze in detail three characteristic spectra. Our approach can rapidly provide a concise representation of a large and complex dataset to materials scientists and chemists. For example, it shows that the surface of common Nd2Fe14B magnet is chemically and structurally very different from the bulk, suggesting a possible surface alteration effect possibly due to the corrosion, which could affect the material’s overall properties. PMID:27680388

  4. Spectro-microscopic measurements of carbonaceous aerosol aging in Central California

    Directory of Open Access Journals (Sweden)

    R. C. Moffet

    2013-04-01

    Full Text Available Carbonaceous aerosols are responsible for large uncertainties in climate models, degraded visibility, and adverse health effects. The Carbonaceous Aerosols and Radiative Effects Study (CARES was designed to study carbonaceous aerosols in the natural environment of Central Valley, California, and learn more about their atmospheric formation and aging. This paper presents results from spectro-microscopic measurements of carbonaceous particles collected during CARES at the time of pollution accumulation event (27–29 June 2010, when in situ measurements indicated an increase in the organic carbon content of aerosols as the Sacramento urban plume aged. Computer controlled scanning electron microscopy coupled with an energy dispersive X-ray detector (CCSEM/EDX and scanning transmission X-ray microscopy coupled with near edge X-ray absorption spectroscopy (STXM/NEXAFS were used to probe the chemical composition and morphology of individual particles. It was found that the mass of organic carbon on individual particles increased through condensation of secondary organic aerosol. STXM/NEXAFS indicated that the number fraction of homogenous organic particles lacking inorganic inclusions (greater than ~50 nm diameter increased with plume age as did the organic mass per particle. Comparison of the CARES spectro-microscopic data set with a similar dataset obtained in Mexico City during the MILAGRO campaign showed that individual particles in Mexico City contained twice as much carbon as those sampled during CARES. The number fraction of soot particles at the Mexico City urban site (30% was larger than at the CARES urban site (10% and the most aged samples from CARES contained less carbon-carbon double bonds. Differences between carbonaceous particles in Mexico City and California result from different sources, photochemical conditions, gas phase reactants, and secondary organic aerosol precursors. The detailed results provided by these spectro-microscopic

  5. Spectro-Microscopic Measurements of Carbonaceous Aerosol Aging in Central California

    Energy Technology Data Exchange (ETDEWEB)

    Moffet, Ryan C.; Rodel, Tobias; Kelly, Stephen T.; Yu, Xiao-Ying; Carroll, Gregory; Fast, Jerome D.; Zaveri, Rahul A.; Laskin, Alexander; Gilles, Mary K.

    2013-10-29

    Carbonaceous aerosols are responsible for large uncertainties in climate models, degraded visibility, and adverse health effects. The Carbonaceous Aerosols and Radiative Effects Study (CARES) was designed to study carbonaceous aerosols in the natural environment of Central Valley, California, and learn more about their atmospheric formation and aging. This paper presents results from spectro-microscopic measurements of carbonaceous particles collected during CARES at the time of pollution accumulation event (June 27-29, 2010), when in situ measurements indicated an increase in the organic carbon content of aerosols as the Sacramento urban plume aged. Computer controlled scanning electron microscopy coupled with an energy dispersive X-ray detector (CCSEM/EDX) and scanning transmission X-ray microscopy coupled with near edge X-ray absorption spectroscopy (STXM/NEXAFS) were used to probe the chemical composition and morphology of individual particles. It was found that the mass of organic carbon on individual particles increased through condensation of secondary organic aerosol. STXM/NEXAFS indicated that the number fraction of homogenous organic particles lacking inorganic inclusions (greater than ~50 nm diameter) increased with plume age as did the organic mass per particle. Comparison of the CARES spectro-microscopic data set with a similar dataset obtained in Mexico City during the MILAGRO campaign showed that individual particles in Mexico City contained twice as much carbon as those sampled during CARES. The number fraction of soot particles at the Mexico City urban site (30%) was larger than at the CARES urban site (10%) and the most aged samples from CARES contained less carbon-carbon double bonds. Differences between carbonaceous particles in Mexico City and California result from different sources, photochemical conditions, gas phase reactants, and secondary organic aerosol precursors. The detailed results provided by these spectro-microscopic measurements

  6. Spectro-microscopic measurements of carbonaceous aerosol aging in Central California

    Science.gov (United States)

    Moffet, R. C.; Rödel, T. C.; Kelly, S. T.; Yu, X. Y.; Carroll, G. T.; Fast, J.; Zaveri, R. A.; Laskin, A.; Gilles, M. K.

    2013-10-01

    Carbonaceous aerosols are responsible for large uncertainties in climate models, degraded visibility, and adverse health effects. The Carbonaceous Aerosols and Radiative Effects Study (CARES) was designed to study carbonaceous aerosols in the natural environment of the Central Valley, California, and learn more about their atmospheric formation and aging. This paper presents results from spectro-microscopic measurements of carbonaceous particles collected during CARES at the time of a pollution accumulation event (27-29 June 2010), when in situ measurements indicated an increase in the organic carbon content of aerosols as the Sacramento urban plume aged. Computer-controlled scanning electron microscopy coupled with an energy dispersive X-ray detector (CCSEM/EDX) and scanning transmission X-ray microscopy coupled with near-edge X-ray absorption spectroscopy (STXM/NEXAFS) were used to probe the chemical composition and morphology of individual particles. It was found that the mass of organic carbon on individual particles increased through condensation of secondary organic aerosol. STXM/NEXAFS indicated that the number fraction of homogenous organic particles lacking inorganic inclusions (greater than ~50 nm equivalent circular diameter) increased with plume age, as did the organic mass per particle. Comparison of the CARES spectro-microscopic dataset with a similar dataset obtained in Mexico City during the MILAGRO campaign showed that fresh particles in Mexico City contained three times as much carbon as those sampled during CARES. The number fraction of soot particles at the Mexico City urban site (ranging from 16.6 to 47.3%) was larger than at the CARES urban site (13.4-15.7%), and the most aged samples from CARES contained fewer carbon-carbon double bonds. Differences between carbonaceous particles in Mexico City and California result from different sources, photochemical conditions, gas phase reactants, and secondary organic aerosol precursors. The detailed

  7. Spectro-microscopic measurements of carbonaceous aerosol aging in Central California

    Directory of Open Access Journals (Sweden)

    R. C. Moffet

    2013-10-01

    Full Text Available Carbonaceous aerosols are responsible for large uncertainties in climate models, degraded visibility, and adverse health effects. The Carbonaceous Aerosols and Radiative Effects Study (CARES was designed to study carbonaceous aerosols in the natural environment of the Central Valley, California, and learn more about their atmospheric formation and aging. This paper presents results from spectro-microscopic measurements of carbonaceous particles collected during CARES at the time of a pollution accumulation event (27–29 June 2010, when in situ measurements indicated an increase in the organic carbon content of aerosols as the Sacramento urban plume aged. Computer-controlled scanning electron microscopy coupled with an energy dispersive X-ray detector (CCSEM/EDX and scanning transmission X-ray microscopy coupled with near-edge X-ray absorption spectroscopy (STXM/NEXAFS were used to probe the chemical composition and morphology of individual particles. It was found that the mass of organic carbon on individual particles increased through condensation of secondary organic aerosol. STXM/NEXAFS indicated that the number fraction of homogenous organic particles lacking inorganic inclusions (greater than ~50 nm equivalent circular diameter increased with plume age, as did the organic mass per particle. Comparison of the CARES spectro-microscopic dataset with a similar dataset obtained in Mexico City during the MILAGRO campaign showed that fresh particles in Mexico City contained three times as much carbon as those sampled during CARES. The number fraction of soot particles at the Mexico City urban site (ranging from 16.6 to 47.3% was larger than at the CARES urban site (13.4–15.7%, and the most aged samples from CARES contained fewer carbon–carbon double bonds. Differences between carbonaceous particles in Mexico City and California result from different sources, photochemical conditions, gas phase reactants, and secondary organic aerosol

  8. Cosmetology: Task Analyses. Competency-Based Education.

    Science.gov (United States)

    Henrico County Public Schools, Glen Allen, VA. Virginia Vocational Curriculum Center.

    These task analyses are designed to be used in combination with the "Trade and Industrial Education Service Area Resource" in order to implement competency-based education in the cosmetology program in Virginia. The task analysis document contains the task inventory, suggested task sequence lists, and content outlines for the secondary courses…

  9. Automatic incrementalization of Prolog based static analyses

    DEFF Research Database (Denmark)

    Eichberg, Michael; Kahl, Matthias; Saha, Diptikalyan;

    2007-01-01

    Modem development environments integrate various static analyses into the build process. Analyses that analyze the whole project whenever the project changes are impractical in this context. We present an approach to automatic incrementalization of analyses that are specified as tabled logic...... incrementalizing a broad range of static analyses....

  10. Network-Based and Binless Frequency Analyses.

    Directory of Open Access Journals (Sweden)

    Sybil Derrible

    Full Text Available We introduce and develop a new network-based and binless methodology to perform frequency analyses and produce histograms. In contrast with traditional frequency analysis techniques that use fixed intervals to bin values, we place a range ±ζ around each individual value in a data set and count the number of values within that range, which allows us to compare every single value of a data set with one another. In essence, the methodology is identical to the construction of a network, where two values are connected if they lie within a given a range (±ζ. The value with the highest degree (i.e., most connections is therefore assimilated to the mode of the distribution. To select an optimal range, we look at the stability of the proportion of nodes in the largest cluster. The methodology is validated by sampling 12 typical distributions, and it is applied to a number of real-world data sets with both spatial and temporal components. The methodology can be applied to any data set and provides a robust means to uncover meaningful patterns and trends. A free python script and a tutorial are also made available to facilitate the application of the method.

  11. Understanding Human Error Based on Automated Analyses

    Data.gov (United States)

    National Aeronautics and Space Administration — This is a report on a continuing study of automated analyses of experiential textual reports to gain insight into the causal factors of human errors in aviation...

  12. Training Residential Staff to Conduct Trial-Based Functional Analyses

    Science.gov (United States)

    Lambert, Joseph M.; Bloom, Sarah E.; Kunnavatana, S. Shanun; Collins, Shawnee D.; Clay, Casey J.

    2013-01-01

    We taught 6 supervisors of a residential service provider for adults with developmental disabilities to train 9 house managers to conduct trial-based functional analyses. Effects of the training were evaluated with a nonconcurrent multiple baseline. Results suggest that house managers can be trained to conduct trial-based functional analyses with…

  13. A syntax-based part-of-speech analyser

    CERN Document Server

    Voutilainen, A

    1995-01-01

    There are two main methodologies for constructing the knowledge base of a natural language analyser: the linguistic and the data-driven. Recent state-of-the-art part-of-speech taggers are based on the data-driven approach. Because of the known feasibility of the linguistic rule-based approach at related levels of description, the success of the data-driven approach in part-of-speech analysis may appear surprising. In this paper, a case is made for the syntactic nature of part-of-speech tagging. A new tagger of English that uses only linguistic distributional rules is outlined and empirically evaluated. Tested against a benchmark corpus of 38,000 words of previously unseen text, this syntax-based system reaches an accuracy of above 99%. Compared to the 95-97% accuracy of its best competitors, this result suggests the feasibility of the linguistic approach also in part-of-speech analysis.

  14. Independet Component Analyses of Ground-based Exoplanetary Transits

    Science.gov (United States)

    Silva Martins-Filho, Walter; Griffith, Caitlin Ann; Pearson, Kyle; Waldmann, Ingo; Biddle, Lauren; Zellem, Robert Thomas; Alvarez-Candal, Alvaro

    2016-10-01

    Most observations of exoplanetary atmospheres are conducted when a "Hot Jupiter" exoplanet transits in front of its host star. These Jovian-sized planets have small orbital periods, on the order of days, and therefore a short transit time, making them more ameanable to observations. Measurements of Hot Jupiter transits must achieve a 10-4 level of accuracy in the flux to determine the spectral modulations of the exoplanetary atmosphere. In order to accomplish this level of precision, we need to extract systematic errors, and, for ground-based measurements, the effects of Earth's atmosphere, from the signal due to the exoplanet, which is several orders of magnitudes smaller. Currently, the effects of the terrestrial atmosphere and the some of the time-dependent systematic errors are treated by dividing the host star by a reference star at each wavelength and time step of the transit. More recently, Independent Component Analyses (ICA) have been used to remove systematic effects from the raw data of space-based observations (Waldmann 2014,2012; Morello et al.,2015,2016). ICA is a statistical method born from the ideas of the blind-source separation studies, which can be used to de-trend several independent source signals of a data set (Hyvarinen and Oja, 2000). One strength of this method is that it requires no additional prior knowledge of the system. Here, we present a study of the application of ICA to ground-based transit observations of extrasolar planets, which are affected by Earth's atmosphere. We analyze photometric data of two extrasolar planets, WASP-1b and GJ3470b, recorded by the 61" Kuiper Telescope at Stewart Observatory using the Harris B and U filters. The presentation will compare the light curve depths and their dispersions as derived from the ICA analysis to those derived by analyses that ratio of the host star to nearby reference stars.References: Waldmann, I.P. 2012 ApJ, 747, 12, Waldamann, I. P. 2014 ApJ, 780, 23; Morello G. 2015 ApJ, 806

  15. Analyser-based x-ray imaging for biomedical research

    International Nuclear Information System (INIS)

    Analyser-based imaging (ABI) is one of the several phase-contrast x-ray imaging techniques being pursued at synchrotron radiation facilities. With advancements in compact source technology, there is a possibility that ABI will become a clinical imaging modality. This paper presents the history of ABI as it has developed from its laboratory source to synchrotron imaging. The fundamental physics of phase-contrast imaging is presented both in a general sense and specifically for ABI. The technology is dependent on the use of perfect crystal monochromator optics. The theory of the x-ray optics is developed and presented in a way that will allow optimization of the imaging for specific biomedical systems. The advancement of analytical algorithms to produce separate images of the sample absorption, refraction angle map and small-angle x-ray scattering is detailed. Several detailed applications to biomedical imaging are presented to illustrate the broad range of systems and body sites studied preclinically to date: breast, cartilage and bone, soft tissue and organs. Ultimately, the application of ABI in clinical imaging will depend partly on the availability of compact sources with sufficient x-ray intensity comparable with that of the current synchrotron environment. (paper)

  16. Microstructural and compositional analyses of GaN-based nanostructures

    Energy Technology Data Exchange (ETDEWEB)

    Pretorius, Angelika; Mueller, Knut; Rosenauer, Andreas [Section Electron Microscopy, Institute of Solid State Physics, University of Bremen, Otto-Hahn-Allee 1, 28359 Bremen (Germany); Schmidt, Thomas; Falta, Jens [Section Surface Physics, Institute of Solid State Physics, University of Bremen, Otto-Hahn-Allee 1, 28359 Bremen (Germany); Aschenbrenner, Timo; Yamaguchi, Tomohiro; Dartsch, Heiko; Hommel, Detlef [Section Semiconductor Epitaxy, Institute of Solid State Physics, University of Bremen, Otto-Hahn-Allee 1, 28359 Bremen (Germany); Kuebel, Christian [Institute of Nanotechnology, Karlsruher Institute of Technology, Hermann-von-Helmholtz-Platz 1, 76344 Eggenstein-Leopoldshafen (Germany)

    2011-08-15

    Composition and microstructure of GaN-based island structures and distributed Bragg reflectors (DBRs) were investigated with transmission electron microscopy (TEM). We analysed free-standing InGaN islands and islands capped with GaN. Growth of the islands performed by molecular beam epitaxy (MBE) and metal organic vapour phase epitaxy (MOVPE) resulted in different microstructures. The islands grown by MBE were plastically relaxed. Cap layer deposition resulted in a rapid dissolution of the islands already at early stages of cap layer growth. These findings are confirmed by grazing-incidence X-ray diffraction (GIXRD). In contrast, the islands grown by MOVPE relax only elastically. Strain state analysis (SSA) revealed that the indium concentration increases towards the tips of the islands. For an application as quantum dots, the islands must be embedded into DBRs. Structure and composition of Al{sub y}Ga{sub 1-y}N/GaN Bragg reflectors on top of an AlGaN buffer layer and In{sub x}Al{sub 1-x}N/GaN Bragg reflectors on top of a GaN buffer layer were investigated. Specifically, structural defects such as threading dislocations (TDs) and inversion domains (IDs) were studied, and we investigated thicknesses, interfaces and interface roughnesses of the layers. As the peak reflectivities of the investigated DBRs do not reach the theoretical predictions, possible reasons are discussed. (Copyright copyright 2011 WILEY-VCH Verlag GmbH and Co. KGaA, Weinheim)

  17. Array-based GNSS Ionospheric Sensing: Estimability and Precision Analyses

    Science.gov (United States)

    Teunissen, Peter

    2016-04-01

    Array-based GNSS Ionospheric Sensing: Estimability and Precision Analyses PJG Teunissen1,2, A Khodabandeh1 and B Zhang1 1GNSS Research Centre, Curtin University, Perth, Australia 2Geoscience and Remote Sensing, Delft University of Technology, The Netherlands Introduction: The Global Navigation Satellite Systems (GNSS) have proved to be an effective means of measuring the Earth's ionosphere. The well-known geometry-free linear combinations of the GNSS data serve as the input of an external ionospheric model to capture both the spatial and temporal characteristics of the ionosphere. Next to the slant ionospheric delays experienced by the GNSS antennas, the geometry-free combinations also contain additional unknown delays that are caused by the presence of the carrier-phase ambiguous cycles and/or the code instrumental delays. That the geometry-free combinations, without an external ionospheric model, cannot unbiasedly determine the slant ionospheric delays reveals the lack of information content in the GNSS data. Motivation and objectives: With the advent of modernized multi-frequency signals, one is confronted with many different combinations of the GNSS data that are capable of sensing the ionosphere. Owing to such diversity and the lack of information content in the GNSS data, various estimable ionospheric delays of different interpretations (and of different precision) can therefore be formed. How such estimable ionospheric delays should be interpreted and the extent to which they contribute to the precision of the unbiased slant ionosphere are the topics of this contribution. Approach and results: In this contribution, we apply S-system theory to study the estimability and precision of the estimable slant ionospheric delays that are measured by the multi-frequency GNSS data. Two different S-systems are presented, leading to two different estimable parameters of different precision: 1) the phase-driven ionospheric delays and 2) the code-driven ionospheric delays

  18. A Web-based Tool Combining Different Type Analyses

    DEFF Research Database (Denmark)

    Henriksen, Kim Steen; Gallagher, John Patrick

    2006-01-01

    of both, and they can be goal-dependent or goal-independent. We describe a prototype tool that can be accessed from a web browser, allowing various type analyses to be run. The first goal of the tool is to allow the analysis results to be examined conveniently by clicking on points in the original program...

  19. A Web-based Tool Combining Different Type Analyses

    DEFF Research Database (Denmark)

    Henriksen, Kim Steen; Gallagher, John Patrick

    2006-01-01

    both, and they can be goal-dependent or goal-independent. We describe a prototype tool that can be accessed from a web browser, allowing various type analyses to be run. The first goal of the tool is to allow the analysis results to be examined conveniently by clicking on points in the original program...... minimal "domain model" of the program with respect to the corresponding pre-interpretation, which can give more precise information than the original descriptive type....

  20. Graphic-based musculoskeletal model for biomechanical analyses and animation.

    Science.gov (United States)

    Chao, Edmund Y S

    2003-04-01

    The ability to combine physiology and engineering analyses with computer sciences has opened the door to the possibility of creating the 'Virtual Human' reality. This paper presents a broad foundation for a full-featured biomechanical simulator for the human musculoskeletal system physiology. This simulation technology unites the expertise in biomechanical analysis and graphic modeling to investigate joint and connective tissue mechanics at the structural level and to visualize the results in both static and animated forms together with the model. Adaptable anatomical models including prosthetic implants and fracture fixation devices and a robust computational infrastructure for static, kinematic, kinetic, and stress analyses under varying boundary and loading conditions are incorporated on a common platform, the VIMS (Virtual Interactive Musculoskeletal System). Within this software system, a manageable database containing long bone dimensions, connective tissue material properties and a library of skeletal joint system functional activities and loading conditions are also available and they can easily be modified, updated and expanded. Application software is also available to allow end-users to perform biomechanical analyses interactively. This paper details the design, capabilities, and features of the VIMS development at Johns Hopkins University, an effort possible only through academic and commercial collaborations. Examples using these models and the computational algorithms in a virtual laboratory environment are used to demonstrate the utility of this unique database and simulation technology. This integrated system will impact on medical education, basic research, device development and application, and clinical patient care related to musculoskeletal diseases, trauma, and rehabilitation.

  1. An Apple II -based bidimensional pulse height analyser

    International Nuclear Information System (INIS)

    The implementation of a pulse height analyser function in an Apple II microcomputer using minimal purpose built hardware is described. Except for a small interface module the system consists of two suites of software, one giving a conventional one dimensional analysis on a span of 1024 channels, and the other a two dimensional analysis on a 128 x 128 image format. Using the recently introduced ACCELERATOR coprocessor card the system performs with a dead time per event of less than 50 μS. Full software facilities are provided for display, storage and processing of the data using standard Applesoft BASIC. (author)

  2. Meta-Analyses of Human Cell-Based Cardiac Regeneration Therapies: Controversies in Meta-Analyses Results on Cardiac Cell-Based Regenerative Studies.

    Science.gov (United States)

    Gyöngyösi, Mariann; Wojakowski, Wojciech; Navarese, Eliano P; Moye, Lemuel À

    2016-04-15

    In contrast to multiple publication-based meta-analyses involving clinical cardiac regeneration therapy in patients with recent myocardial infarction, a recently published meta-analysis based on individual patient data reported no effect of cell therapy on left ventricular function or clinical outcome. A comprehensive review of the data collection, statistics, and the overall principles of meta-analyses provides further clarification and explanation for this controversy. The advantages and pitfalls of different types of meta-analyses are reviewed here. Each meta-analysis approach has a place when pivotal clinical trials are lacking and sheds light on the magnitude of the treatment in a complex healthcare field.

  3. PCR and RFLP analyses based on the ribosomal protein operon

    Science.gov (United States)

    Differentiation and classification of phytoplasmas have been primarily based on the highly conserved 16Sr RNA gene. RFLP analysis of 16Sr RNA gene sequences has identified 31 16Sr RNA (16Sr) groups and more than 100 16Sr subgroups. Classification of phytoplasma strains can however, become more refin...

  4. Exploring clinical associations using '-omics' based enrichment analyses.

    Directory of Open Access Journals (Sweden)

    David A Hanauer

    Full Text Available BACKGROUND: The vast amounts of clinical data collected in electronic health records (EHR is analogous to the data explosion from the "-omics" revolution. In the EHR clinicians often maintain patient-specific problem summary lists which are used to provide a concise overview of significant medical diagnoses. We hypothesized that by tapping into the collective wisdom generated by hundreds of physicians entering problems into the EHR we could detect significant associations among diagnoses that are not described in the literature. METHODOLOGY/PRINCIPAL FINDINGS: We employed an analytic approach original developed for detecting associations between sets of gene expression data, called Molecular Concept Map (MCM, to find significant associations among the 1.5 million clinical problem summary list entries in 327,000 patients from our institution's EHR. An odds ratio (OR and p-value was calculated for each association. A subset of the 750,000 associations found were explored using the MCM tool. Expected associations were confirmed and recently reported but poorly known associations were uncovered. Novel associations which may warrant further exploration were also found. Examples of expected associations included non-insulin dependent diabetes mellitus and various diagnoses such as retinopathy, hypertension, and coronary artery disease. A recently reported association included irritable bowel and vulvodynia (OR 2.9, p = 5.6x10(-4. Associations that are currently unknown or very poorly known included those between granuloma annulare and osteoarthritis (OR 4.3, p = 1.1x10(-4 and pyloric stenosis and ventricular septal defect (OR 12.1, p = 2.0x10(-3. CONCLUSIONS/SIGNIFICANCE: Computer programs developed for analyses of "-omic" data can be successfully applied to the area of clinical medicine. The results of the analysis may be useful for hypothesis generation as well as supporting clinical care by reminding clinicians of likely problems associated with a

  5. Design and Analyses of a MEMS Based Resonant Magnetometer.

    Science.gov (United States)

    Ren, Dahai; Wu, Lingqi; Yan, Meizhi; Cui, Mingyang; You, Zheng; Hu, Muzhi

    2009-01-01

    A novel design of a MEMS torsional resonant magnetometer based on Lorentz force is presented and fabricated. The magnetometer consists of a silicon resonator, torsional beam, excitation coil, capacitance plates and glass substrate. Working in a resonant condition, the sensor's vibration amplitude is converted into the sensing capacitance change, which reflects the outside magnetic flux-density. Based on the simulation, the key structure parameters are optimized and the air damping effect is estimated. The test results of the prototype are in accordance with the simulation results of the designed model. The resolution of the magnetometer can reach 30 nT. The test results indicate its sensitivity of more than 400 mV/μT when operating in a 10 Pa vacuum environment. PMID:22399981

  6. Design and Analyses of a MEMS Based Resonant Magnetometer

    Directory of Open Access Journals (Sweden)

    Dahai Ren

    2009-09-01

    Full Text Available A novel design of a MEMS torsional resonant magnetometer based on Lorentz force is presented and fabricated. The magnetometer consists of a silicon resonator, torsional beam, excitation coil, capacitance plates and glass substrate. Working in a resonant condition, the sensor’s vibration amplitude is converted into the sensing capacitance change, which reflects the outside magnetic flux-density. Based on the simulation, the key structure parameters are optimized and the air damping effect is estimated. The test results of the prototype are in accordance with the simulation results of the designed model. The resolution of the magnetometer can reach 30 nT. The test results indicate its sensitivity of more than 400 mV/μT when operating in a 10 Pa vacuum environment.

  7. Mass spectrometry-based proteomic analyses of contact lens deposition

    OpenAIRE

    Green-Church, Kari B.; Nichols, Jason J

    2008-01-01

    Purpose The purpose of this report is to describe the contact lens deposition proteome associated with two silicone hydrogel contact lenses and care solutions using a mass spectrometric-based approach. Methods This was a randomized, controlled, examiner-masked crossover clinical trial that included 48 participants. Lenses and no-rub care solutions evaluated included galyfilcon A (Acuvue Advance, Vistakon Inc., Jacksonville, FL), lotrafilcon B (O2 Optix, CIBA Vision Inc., Duluth, GA), AQuify (...

  8. Phylogenomic analyses of bat subordinal relationships based on transcriptome data.

    Science.gov (United States)

    Lei, Ming; Dong, Dong

    2016-01-01

    Bats, order Chiroptera, are one of the largest monophyletic clades in mammals. Based on morphology and behaviour bats were once differentiated into two suborders Megachiroptera and Microchiroptera Recently, researchers proposed alternative views of chiropteran classification (suborders Yinpterochiroptera and Yangochiroptera) based on morphological, molecular and fossil evidence. Since genome-scale data can significantly increase the number of informative characters for analysis, transcriptome RNA-seq data for 12 bat taxa were generated in an attempt to resolve bat subordinal relationships at the genome level. Phylogenetic reconstructions were conducted using up to 1470 orthologous genes and 634,288 aligned sites. We found strong support for the Yinpterochiroptera-Yangochiroptera classification. Next, we built expression distance matrices for each species and reconstructed gene expression trees. The tree is highly consistent with sequence-based phylogeny. We also examined the influence of taxa sampling on the performance of phylogenetic methods, and found that the topology is robust to sampling. Relaxed molecular clock estimates the divergence between Yinpterochiroptera and Yangochiroptera around 63 million years ago. The most recent common ancestor of Yinpterochiroptera, corresponding to the split between Rhinolophoidea and Pteropodidae (Old World Fruit bats), is estimated to have occurred 60 million years ago. Our work provided a valuable resource to further explore the evolutionary relationship within bats. PMID:27291671

  9. Design of the storage location based on the ABC analyses

    Science.gov (United States)

    Jemelka, Milan; Chramcov, Bronislav; Kříž, Pavel

    2016-06-01

    The paper focuses on process efficiency and saving storage costs. Maintaining inventory through putaway strategy takes personnel time and costs money. The aim is to control inventory in the best way. The ABC classification based on Villefredo Pareto theory is used for a design of warehouse layout. New design of storage location reduces the distance of fork-lifters, total costs and it increases inventory process efficiency. The suggested solutions and evaluation of achieved results are described in detail. Proposed solutions were realized in real warehouse operation.

  10. DNA-energetics-based analyses suggest additional genes in prokaryotes

    Indian Academy of Sciences (India)

    Garima Khandelwal; Jalaj Gupta; B Jayaram

    2012-07-01

    We present here a novel methodology for predicting new genes in prokaryotic genomes on the basis of inherent energetics of DNA. Regions of higher thermodynamic stability were identified, which were filtered based on already known annotations to yield a set of potentially new genes. These were then processed for their compatibility with the stereo-chemical properties of proteins and tripeptide frequencies of proteins in Swissprot data, which results in a reliable set of new genes in a genome. Quite surprisingly, the methodology identifies new genes even in well-annotated genomes. Also, the methodology can handle genomes of any GC-content, size and number of annotated genes.

  11. GIS-based Approaches to Catchment Area Analyses of Mass Transit

    DEFF Research Database (Denmark)

    Andersen, Jonas Lohmann Elkjær; Landex, Alex

    2009-01-01

    Catchment area analyses of stops or stations are used to investigate potential number of travelers to public transportation. These analyses are considered a strong decision tool in the planning process of mass transit especially railroads. Catchment area analyses are GIS-based buffer and overlay...

  12. Activity-based analyses lead to better decision making.

    Science.gov (United States)

    Player, S

    1998-08-01

    Activity-based costing (ABC) and activity-based management (ABM) are cost-management tools that are relatively new to the healthcare industry. ABC is used for strategic decision making. It assesses the costs associated with specific activities and resources and links those costs to specific internal and external customers of the healthcare enterprise (e.g., patients, service lines, and physician groups) to determine the costs associated with each customer. This cost information then can be adjusted to account for anticipated changes and to predict future costs. ABM, on the other hand, supports operations by focusing on the causes of costs and how costs can be reduced. It assesses cost drivers that directly affect the cost of a product or service, and uses performance measures to evaluate the financial or nonfinancial benefit an activity provides. By identifying each cost driver and assessing the value the element adds to the healthcare enterprise, ABM provides a basis for selecting areas that can be changed to reduce costs. PMID:10182280

  13. Hilbert transform based analyses on ship-rocking signals

    CERN Document Server

    Huang, Wei; Kang, Deyong; Chen, Zhi

    2015-01-01

    The ship-rocking is a crucial factor which affects the accuracy of the ocean-based flight vehicle measurement. Here we have analyzed four groups of ship-rocking time series in horizontal and vertical directions utilizing a Hilbert based method from statistical physics. Our method gives a way to construct an analytic signal on the two-dimensional plane from a one-dimensional time series. The analytic signal share the complete property of the original time series. From the analytic signal of a time series, we have found some information of the original time series which are often hidden from the view of the conventional methods. The analytic signals of interest usually evolve very smoothly on the complex plane. In addition, the phase of the analytic signal is usually moves linearly in time. From the auto-correlation and cross-correlation functions of the original signals as well as the instantaneous amplitudes and phase increments of the analytic signals we have found that the ship-rocking in horizontal directi...

  14. Quantitative metagenomic analyses based on average genome size normalization

    DEFF Research Database (Denmark)

    Frank, Jeremy Alexander; Sørensen, Søren Johannes

    2011-01-01

    Over the past quarter-century, microbiologists have used DNA sequence information to aid in the characterization of microbial communities. During the last decade, this has expanded from single genes to microbial community genomics, or metagenomics, in which the gene content of an environment can...... provide not just a census of the community members but direct information on metabolic capabilities and potential interactions among community members. Here we introduce a method for the quantitative characterization and comparison of microbial communities based on the normalization of metagenomic data...... by estimating average genome sizes. This normalization can relieve comparative biases introduced by differences in community structure, number of sequencing reads, and sequencing read lengths between different metagenomes. We demonstrate the utility of this approach by comparing metagenomes from two different...

  15. AMPHIDINIUM REVISITED. I. REDEFINITION OF AMPHIDINIUM (DINOPHYCEAE) BASED ON CLADISTIC AND MOLECULAR PHYLOGENETIC ANALYSES

    DEFF Research Database (Denmark)

    Jørgensen, Mårten Flø; Murray, Shauna; Daugbjerg, Niels

    2004-01-01

    , and origin of the sulcus. The description of A. elegans by Grell and Wohlfarth-Bottermann was found to be identical to it. A species fitting the original description of A. operculatum was cultured and included in the analyses. Based on cladistic and molecular analyses, it grouped together with all other...

  16. How Can Meta-Analyses Guide Practice? A Review of the Learning Disability Research Base

    Science.gov (United States)

    Therrien, William J.; Zaman, Maliha; Banda, Devender R.

    2011-01-01

    Meta-analysis is considered an acceptable method to evaluate research studies for evidence-based practices. The purpose of this review is to examine the applicability of using meta-analyses in the learning disability field to guide classroom practice. The authors evaluated 15 learning disability meta-analyses in three domains: large-scale…

  17. A New Optimization Method for Centrifugal Compressors Based on 1D Calculations and Analyses

    OpenAIRE

    Pei-Yuan Li; Chu-Wei Gu; Yin Song

    2015-01-01

    This paper presents an optimization design method for centrifugal compressors based on one-dimensional calculations and analyses. It consists of two parts: (1) centrifugal compressor geometry optimization based on one-dimensional calculations and (2) matching optimization of the vaned diffuser with an impeller based on the required throat area. A low pressure stage centrifugal compressor in a MW level gas turbine is optimized by this method. One-dimensional calculation results show that D3/D...

  18. X-ray photoelectron emission spectromicroscopic analysis of arborescent lycopsid cell wall composition and Carboniferous coal ball preservation

    Energy Technology Data Exchange (ETDEWEB)

    Boyce, C. Kevin [Department of the Geophysical Sciences, University of Chicago, Chicago, IL 60637 (United States); Abrecht, Mike; Zhou, Dong; Gilbert, P.U.P.A. [Department of Physics, University of Wisconsin, Madison, WI 53706 (United States)

    2010-08-01

    Two alternative processes complicate understanding of the biochemical origins and geochemical alteration of organic matter over geologic time: selective preservation of original biopolymers and in situ generation of new geopolymers. One of the best constrained potential sources of bio- and geochemical information about extinct fossil plants is frequently overlooked. Permineralized anatomically preserved plant fossils allow analysis of individual cell and tissue types that have an original biochemical composition already known from living plants. The original composition of more enigmatic fossils can be constrained by geochemical comparisons to tissues of better understood fossils from the same locality. This strategy is possible using synchrotron-based techniques for submicron-scale imaging with X-rays over a range of frequencies in order to provide information concerning the relative abundance of different organic bonds with X-ray Absorption Near Edge Spectroscopy. In this study, X-ray PhotoElectron Emission spectroMicroscopy (X-PEEM) was used to analyze the tissues of Lepidodendron, one of the lycopsid trees that were canopy dominants of many Pennsylvanian coal swamp forests. Its periderm or bark - the single greatest biomass contributor to many Late Paleozoic coals - is found to have a greater aliphatic content and an overall greater density of organic matter than lignified wood. Because X-PEEM allows simultaneous analysis of organic matter and matrix calcite in fully mineralized fossils, this technique also has great potential for analysis of fossil preservation, including documentation of significant traces of organic matter entrained in the calcite crystal fabric that fills the cell lumens. (author)

  19. Use of Tree-Based Regression in the Analyses of L2 Reading Test Items

    Science.gov (United States)

    Gao, Lingyun; Rogers, W. Todd

    2011-01-01

    The purpose of this study was to explore whether the results of Tree Based Regression (TBR) analyses, informed by a validated cognitive model, would enhance the interpretation of item difficulties in terms of the cognitive processes involved in answering the reading items included in two forms of the Michigan English Language Assessment Battery…

  20. SURFACE SUBSIDENCE ANALYSES BASED ON THE PRINCIPLE OF EXPANSION AND RECONSOLIDATION OF THE BROKEN ROCK STRATA

    Institute of Scientific and Technical Information of China (English)

    王悦汉; 缪协兴

    1997-01-01

    The results of experimental studies about the characteristics of broken rock expansion and reconsolidation were briefly introduced in this paper, and the surface subsidence coefficient under critical mining conditions was also analysed based on the principle of expansion and reconsolidation of the broken rock strata, a equation to calculate the corresponding surface subsidence was finally produced. This calculation method can be used to calculate more accurately the convergence quantity of consolidated rocks in the broken zone of the working face. In addition, case analyses by using the introduced calculation method were conducted and satisfactory results were obtained.

  1. Single-cell-based sensors and synchrotron FTIR spectroscopy: a hybrid system towards bacterial detection.

    Science.gov (United States)

    Veiseh, Mandana; Veiseh, Omid; Martin, Michael C; Bertozzi, Carolyn; Zhang, Miqin

    2007-09-30

    Microarrays of single macrophage cell-based sensors were developed and demonstrated for potential real-time bacterium detection by synchrotron FTIR microscopy. The cells were patterned on gold electrodes of silicon oxide substrates by a surface engineering technique, in which the gold electrodes were immobilized with fibronectin to mediate cell adhesion and the silicon oxide background was passivated with polyethylene glycol (PEG) to resist protein adsorption and cell adhesion. Cell morphology and IR spectra of single, double, and triple cells on gold electrodes exposed to lipopolysaccharide (LPS) of different concentrations were compared to reveal the detection capability of this cell-based sensing platform. The single-cell-based system was found to generate the most significant and consistent IR spectrum shifts upon exposure to LPS, thus providing the highest detection sensitivity. Changes in cell morphology and IR shifts upon cell exposure to LPS were found to be dependent on the LPS concentration and exposure time, which established a method for the identification of LPS concentration and infected cell population. Possibility of using this single-cell system with conventional IR spectroscopy as well as its limitation was investigated by comparing IR spectra of single-cell arrays with gold electrode surface areas of 25, 100, and 400 microm2 using both synchrotron and conventional FTIR spectromicroscopes. This cell-based platform may potentially provide real-time, label-free, and rapid bacterial detection, and allow for high-throughput statistical analyses, and portability. PMID:17560777

  2. Cloud-based bioinformatics workflow platform for large-scale next-generation sequencing analyses.

    Science.gov (United States)

    Liu, Bo; Madduri, Ravi K; Sotomayor, Borja; Chard, Kyle; Lacinski, Lukasz; Dave, Utpal J; Li, Jianqiang; Liu, Chunchen; Foster, Ian T

    2014-06-01

    Due to the upcoming data deluge of genome data, the need for storing and processing large-scale genome data, easy access to biomedical analyses tools, efficient data sharing and retrieval has presented significant challenges. The variability in data volume results in variable computing and storage requirements, therefore biomedical researchers are pursuing more reliable, dynamic and convenient methods for conducting sequencing analyses. This paper proposes a Cloud-based bioinformatics workflow platform for large-scale next-generation sequencing analyses, which enables reliable and highly scalable execution of sequencing analyses workflows in a fully automated manner. Our platform extends the existing Galaxy workflow system by adding data management capabilities for transferring large quantities of data efficiently and reliably (via Globus Transfer), domain-specific analyses tools preconfigured for immediate use by researchers (via user-specific tools integration), automatic deployment on Cloud for on-demand resource allocation and pay-as-you-go pricing (via Globus Provision), a Cloud provisioning tool for auto-scaling (via HTCondor scheduler), and the support for validating the correctness of workflows (via semantic verification tools). Two bioinformatics workflow use cases as well as performance evaluation are presented to validate the feasibility of the proposed approach.

  3. Analysing task design and students' responses to context-based problems through different analytical frameworks

    Science.gov (United States)

    Broman, Karolina; Bernholt, Sascha; Parchmann, Ilka

    2015-05-01

    Background:Context-based learning approaches are used to enhance students' interest in, and knowledge about, science. According to different empirical studies, students' interest is improved by applying these more non-conventional approaches, while effects on learning outcomes are less coherent. Hence, further insights are needed into the structure of context-based problems in comparison to traditional problems, and into students' problem-solving strategies. Therefore, a suitable framework is necessary, both for the analysis of tasks and strategies. Purpose:The aim of this paper is to explore traditional and context-based tasks as well as students' responses to exemplary tasks to identify a suitable framework for future design and analyses of context-based problems. The paper discusses different established frameworks and applies the Higher-Order Cognitive Skills/Lower-Order Cognitive Skills (HOCS/LOCS) taxonomy and the Model of Hierarchical Complexity in Chemistry (MHC-C) to analyse traditional tasks and students' responses. Sample:Upper secondary students (n=236) at the Natural Science Programme, i.e. possible future scientists, are investigated to explore learning outcomes when they solve chemistry tasks, both more conventional as well as context-based chemistry problems. Design and methods:A typical chemistry examination test has been analysed, first the test items in themselves (n=36), and thereafter 236 students' responses to one representative context-based problem. Content analysis using HOCS/LOCS and MHC-C frameworks has been applied to analyse both quantitative and qualitative data, allowing us to describe different problem-solving strategies. Results:The empirical results show that both frameworks are suitable to identify students' strategies, mainly focusing on recall of memorized facts when solving chemistry test items. Almost all test items were also assessing lower order thinking. The combination of frameworks with the chemistry syllabus has been

  4. Development of a Low-Cost SIA-Based Analyser for Water Samples.

    Science.gov (United States)

    Knochen, Moisés; Caamaño, Alejandro; Bentos, Heinkel

    2011-01-01

    An automated multiparametric water analyser was developed and evaluated. The system was based on Sequential Injection Analysis and featured a photometric detection system comprising a tricolour RGB LED source and a photodiode. A program compiled in Visual Basic was used to control the SIA flow system, the LEDs, and the data acquisition and processing. The program loads and executes methods written in ASCII and stored as text files. The system was capable of handling up to four methods simultaneously. When used to carry out methods based on the APHA standard methods, the figures of merit obtained were considered satisfactory for the purpose. The total cost was under US $4600. It was concluded that the analyser is appropriate for routine use and has potential for an increased number of simultaneous methods and for enhanced capabilities if new versions of the software are developed.

  5. Physical characterization of biomass-based pyrolysis liquids. Application of standard fuel oil analyses

    Energy Technology Data Exchange (ETDEWEB)

    Oasmaa, A.; Leppaemaeki, E.; Koponen, P.; Levander, J.; Tapola, E. [VTT Energy, Espoo (Finland). Energy Production Technologies

    1997-12-31

    The main purpose of the study was to test the applicability of standard fuel oil methods developed for petroleum-based fuels to pyrolysis liquids. In addition, research on sampling, homogeneity, stability, miscibility and corrosivity was carried out. The standard methods have been tested for several different pyrolysis liquids. Recommendations on sampling, sample size and small modifications of standard methods are presented. In general, most of the methods can be used as such but the accuracy of the analysis can be improved by minor modifications. Fuel oil analyses not suitable for pyrolysis liquids have been identified. Homogeneity of the liquids is the most critical factor in accurate analysis. The presence of air bubbles may disturb in several analyses. Sample preheating and prefiltration should be avoided when possible. The former may cause changes in the composition and structure of the pyrolysis liquid. The latter may remove part of organic material with particles. The size of the sample should be determined on the basis of the homogeneity and the water content of the liquid. The basic analyses of the Technical Research Centre of Finland (VTT) include water, pH, solids, ash, Conradson carbon residue, heating value, CHN, density, viscosity, pourpoint, flash point, and stability. Additional analyses are carried out when needed. (orig.) 53 refs.

  6. Methodology for Web Services Adoption Based on Technology Adoption Theory and Business Process Analyses

    Institute of Scientific and Technical Information of China (English)

    AN Liping; YAN Jianyuan; TONG Lingyun

    2008-01-01

    Web services use an emerging service-oriented architecture for distributed computing. Many organizations are either in the process of adopting web services technology or evaluating this option for incorporation into their enterprise information architectures. Implementation of this new technology requires careful assessment of the needs and capabilities of an organization to formulate adoption strategies. This paper presents a methodology for web services adoption based on technology adoption theory and business process analyses. The methodology suggests that strategies, business areas, and functions within an organization should be considered based on the existing organizational information technology status during the process of adopting web services to support the business needs and requirements.

  7. Comparing Surface-Based and Volume-Based Analyses of Functional Neuroimaging Data in Patients with Schizophrenia

    OpenAIRE

    Anticevic, Alan; Dierker, Donna L.; Gillespie, Sarah K.; Repovs, Grega; Csernansky, John G.; Van Essen, David C.; Deanna M Barch

    2008-01-01

    A major challenge in functional neuroimaging is to cope with individual variability in cortical structure and function. Most analyses of cortical function compensate for variability using affine or low-dimensional nonlinear volume-based registration (VBR) of individual subjects to an atlas, which does not explicitly take into account the geometry of cortical convolutions. A promising alternative is to use surface-based registration (SBR), which capitalizes on explicit surface representations ...

  8. A New Optimization Method for Centrifugal Compressors Based on 1D Calculations and Analyses

    Directory of Open Access Journals (Sweden)

    Pei-Yuan Li

    2015-05-01

    Full Text Available This paper presents an optimization design method for centrifugal compressors based on one-dimensional calculations and analyses. It consists of two parts: (1 centrifugal compressor geometry optimization based on one-dimensional calculations and (2 matching optimization of the vaned diffuser with an impeller based on the required throat area. A low pressure stage centrifugal compressor in a MW level gas turbine is optimized by this method. One-dimensional calculation results show that D3/D2 is too large in the original design, resulting in the low efficiency of the entire stage. Based on the one-dimensional optimization results, the geometry of the diffuser has been redesigned. The outlet diameter of the vaneless diffuser has been reduced, and the original single stage diffuser has been replaced by a tandem vaned diffuser. After optimization, the entire stage pressure ratio is increased by approximately 4%, and the efficiency is increased by approximately 2%.

  9. A Python-based Post-processing Toolset For Seismic Analyses

    CERN Document Server

    Brasier, Steve

    2014-01-01

    This paper discusses the design and implementation of a Python-based toolset to aid in assessing the response of the UK's Advanced Gas Reactor nuclear power stations to earthquakes. The seismic analyses themselves are carried out with a commercial Finite Element solver, but understanding the raw model output this produces requires customised post-processing and visualisation tools. Extending the existing tools had become increasingly difficult and a decision was made to develop a new, Python-based toolset. This comprises of a post-processing framework (aftershock) which includes an embedded Python interpreter, and a plotting package (afterplot) based on numpy and matplotlib. The new toolset had to be significantly more flexible and easier to maintain than the existing code-base, while allowing the majority of development to be carried out by engineers with little training in software development. The resulting architecture will be described with a focus on exploring how the design drivers were met and the suc...

  10. A protein relational database and protein family knowledge bases to facilitate structure-based design analyses.

    Science.gov (United States)

    Mobilio, Dominick; Walker, Gary; Brooijmans, Natasja; Nilakantan, Ramaswamy; Denny, R Aldrin; Dejoannis, Jason; Feyfant, Eric; Kowticwar, Rupesh K; Mankala, Jyoti; Palli, Satish; Punyamantula, Sairam; Tatipally, Maneesh; John, Reji K; Humblet, Christine

    2010-08-01

    The Protein Data Bank is the most comprehensive source of experimental macromolecular structures. It can, however, be difficult at times to locate relevant structures with the Protein Data Bank search interface. This is particularly true when searching for complexes containing specific interactions between protein and ligand atoms. Moreover, searching within a family of proteins can be tedious. For example, one cannot search for some conserved residue as residue numbers vary across structures. We describe herein three databases, Protein Relational Database, Kinase Knowledge Base, and Matrix Metalloproteinase Knowledge Base, containing protein structures from the Protein Data Bank. In Protein Relational Database, atom-atom distances between protein and ligand have been precalculated allowing for millisecond retrieval based on atom identity and distance constraints. Ring centroids, centroid-centroid and centroid-atom distances and angles have also been included permitting queries for pi-stacking interactions and other structural motifs involving rings. Other geometric features can be searched through the inclusion of residue pair and triplet distances. In Kinase Knowledge Base and Matrix Metalloproteinase Knowledge Base, the catalytic domains have been aligned into common residue numbering schemes. Thus, by searching across Protein Relational Database and Kinase Knowledge Base, one can easily retrieve structures wherein, for example, a ligand of interest is making contact with the gatekeeper residue.

  11. FY01 Supplemental Science and Performance Analysis: Volume 1, Scientific Bases and Analyses

    International Nuclear Information System (INIS)

    The U.S. Department of Energy (DOE) is considering the possible recommendation of a site at Yucca Mountain, Nevada, for development as a geologic repository for the disposal of high-level radioactive waste and spent nuclear fuel. To facilitate public review and comment, in May 2001 the DOE released the Yucca Mountain Science and Engineering Report (S and ER) (DOE 2001 [DIRS 153849]), which presents technical information supporting the consideration of the possible site recommendation. The report summarizes the results of more than 20 years of scientific and engineering studies. A decision to recommend the site has not been made: the DOE has provided the S and ER and its supporting documents as an aid to the public in formulating comments on the possible recommendation. When the S and ER (DOE 2001 [DIRS 153849]) was released, the DOE acknowledged that technical and scientific analyses of the site were ongoing. Therefore, the DOE noted in the Federal Register Notice accompanying the report (66 FR 23013 [DIRS 155009], p. 2) that additional technical information would be released before the dates, locations, and times for public hearings on the possible recommendation were announced. This information includes: (1) the results of additional technical studies of a potential repository at Yucca Mountain, contained in this FY01 Supplemental Science and Performance Analyses: Vol. 1, Scientific Bases and Analyses; and FY01 Supplemental Science and Performance Analyses: Vol. 2, Performance Analyses (McNeish 2001 [DIRS 155023]) (collectively referred to as the SSPA) and (2) a preliminary evaluation of the Yucca Mountain site's preclosure and postclosure performance against the DOE's proposed site suitability guidelines (10 CFR Part 963 [64 FR 67054 [DIRS 124754

  12. FY01 Supplemental Science and Performance Analysis: Volume 1,Scientific Bases and Analyses

    Energy Technology Data Exchange (ETDEWEB)

    Bodvarsson, G.S.; Dobson, David

    2001-05-30

    The U.S. Department of Energy (DOE) is considering the possible recommendation of a site at Yucca Mountain, Nevada, for development as a geologic repository for the disposal of high-level radioactive waste and spent nuclear fuel. To facilitate public review and comment, in May 2001 the DOE released the Yucca Mountain Science and Engineering Report (S&ER) (DOE 2001 [DIRS 153849]), which presents technical information supporting the consideration of the possible site recommendation. The report summarizes the results of more than 20 years of scientific and engineering studies. A decision to recommend the site has not been made: the DOE has provided the S&ER and its supporting documents as an aid to the public in formulating comments on the possible recommendation. When the S&ER (DOE 2001 [DIRS 153849]) was released, the DOE acknowledged that technical and scientific analyses of the site were ongoing. Therefore, the DOE noted in the Federal Register Notice accompanying the report (66 FR 23013 [DIRS 155009], p. 2) that additional technical information would be released before the dates, locations, and times for public hearings on the possible recommendation were announced. This information includes: (1) the results of additional technical studies of a potential repository at Yucca Mountain, contained in this FY01 Supplemental Science and Performance Analyses: Vol. 1, Scientific Bases and Analyses; and FY01 Supplemental Science and Performance Analyses: Vol. 2, Performance Analyses (McNeish 2001 [DIRS 155023]) (collectively referred to as the SSPA) and (2) a preliminary evaluation of the Yucca Mountain site's preclosure and postclosure performance against the DOE's proposed site suitability guidelines (10 CFR Part 963 [64 FR 67054 [DIRS 124754

  13. DESIGNING EAP MATERIALS BASED ON INTERCULTURAL CORPUS ANALYSES: THE CASE OF LOGICAL MARKERS IN RESEARCH ARTICLES

    Directory of Open Access Journals (Sweden)

    Pilar Mur Dueñas

    2009-10-01

    Full Text Available The ultimate aim of intercultural analyses in English for Academic Purposes is to help non-native scholars function successfully in the international disciplinary community in English. The aim of this paper is to show how corpus-based intercultural analyses can be useful to design EAP materials on a particular metadiscourse category, logical markers, in research article writing. The paper first describes the analysis carried out of additive, contrastive and consecutive logical markers in a corpus of research articles in English and in Spanish in a particular discipline, Business Management. Differences were found in their frequency and also in the use of each of the sub-categories. Then, five activities designed on the basis of these results are presented. They are aimed at raising Spanish Business scholars' awareness of the specific uses and pragmatic function of frequent logical markers in international research articles in English.

  14. Comparison between CARIBIC aerosol samples analysed by accelerator-based methods and optical particle counter measurements

    Directory of Open Access Journals (Sweden)

    B. G. Martinsson

    2014-04-01

    Full Text Available Inter-comparison of results from two kinds of aerosol systems in the CARIBIC (Civil Aircraft for the Regular Investigation of the atmosphere Based on an Instrument Container passenger aircraft based observatory, operating during intercontinental flights at 9–12 km altitude, is presented. Aerosol from the lowermost stratosphere (LMS, the extra-tropical upper troposphere (UT and the tropical mid troposphere (MT were investigated. Aerosol particle volume concentration measured with an optical particle counter (OPC is compared with analytical results of the sum of masses of all major and several minor constituents from aerosol samples collected with an impactor. Analyses were undertaken with accelerator-based methods particle-induced X-ray emission (PIXE and particle elastic scattering analysis (PESA. Data from 48 flights during one year are used, leading to a total of 106 individual comparisons. The ratios of the particle volume from the OPC and the total mass from the analyses were in 84% within a relatively narrow interval. Data points outside this interval are connected with inlet-related effects in clouds, large variability in aerosol composition, particle size distribution effects and some cases of non-ideal sampling. Overall, the comparison of these two CARIBIC measurements based on vastly different methods show good agreement, implying that the chemical and size information can be combined in studies of the MT/UT/LMS aerosol.

  15. Street-based Topological Representations and Analyses for Predicting Traffic Flow in GIS

    CERN Document Server

    Jiang, Bin

    2007-01-01

    It is well received in the space syntax community that traffic flow is significantly correlated to a morphological property of streets, which are represented by axial lines, forming a so called axial map. The correlation co-efficient (R square value) approaches 0.8 and even a higher value according to the space syntax literature. In this paper, we study the same issue using the Hong Kong street network and the Hong Kong Annual Average Daily Traffic (AADT) datasets, and find surprisingly that street-based topological representations (or street-street topologies) tend to be better representations than the axial map. In other words, vehicle flow is correlated to a morphological property of streets better than that of axial lines. Based on the finding, we suggest the street-based topological representations as an alternative GIS representation, and the topological analyses as a new analytical means for geographic knowledge discovery.

  16. Differentiating LGBT individuals in substance abuse treatment: analyses based on sexuality and drug preference.

    Science.gov (United States)

    Cochran, Bryan N; Peavy, K Michelle; Santa, Annesa Flentje

    2007-01-01

    In a prior study (Cochran & Cauce, 2006), LGBT individuals seeking treatment demonstrated greater substance use severity, more psychosocial stressors, and increased use of psychiatric services when compared to their heterosexual counterparts. That study, and similar to others in the field of LGBT research, collapsed LGBT individuals into a single category and did not examine individual differences within this category. The present study utilizes the same sample of LGBT clients (N = 610); however, an exploratory cluster analysis was conducted, based on drug preference, to determine which subcategories exist within this unique sample. In a subsequent set of analyses, the sample was divided based on sexuality to determine if there were differences between these groups on psychosocial functioning variables. Results indicated three distinct clusters, which differed in both demographic characteristics and severity of substance use problems. Groups based on sexuality differed in terms of primary problem substance, as well as psychosocial variables. Implications for treatment of these subgroups are discussed. PMID:19835042

  17. A Game-based Corpus for Analysing the Interplay between Game Context and Player Experience

    DEFF Research Database (Denmark)

    Shaker, Noor; Yannakakis, Georgios N.; Asteriadis, Stylianos;

    2011-01-01

    Recognizing players' aective state while playing video games has been the focus of many recent research studies. In this paper we describe the process that has been followed to build a corpus based on game events and recorded video sessions from human players while playing Super Mario Bros. We...... present dierent types of information that have been extracted from game context, player preferences and perception of the game, as well as user features, automatically extracted from video recordings.We run a number of initial experiments to analyse players' behavior while playing video games as a case...

  18. Prediction formulas for individual opioid analgesic requirements based on genetic polymorphism analyses.

    Directory of Open Access Journals (Sweden)

    Kaori Yoshida

    Full Text Available The analgesic efficacy of opioids is well known to vary widely among individuals, and various factors related to individual differences in opioid sensitivity have been identified. However, a prediction model to calculate appropriate opioid analgesic requirements has not yet been established. The present study sought to construct prediction formulas for individual opioid analgesic requirements based on genetic polymorphisms and clinical data from patients who underwent cosmetic orthognathic surgery and validate the utility of the prediction formulas in patients who underwent major open abdominal surgery.To construct the prediction formulas, we performed multiple linear regression analyses using data from subjects who underwent cosmetic orthognathic surgery. The dependent variable was 24-h postoperative or perioperative fentanyl use, and the independent variables were age, gender, height, weight, pain perception latencies (PPL, and genotype data of five single-nucleotide polymorphisms (SNPs. To examine the utility of the prediction formulas, we performed simple linear regression analyses using subjects who underwent major open abdominal surgery. Actual 24-h postoperative or perioperative analgesic use and the predicted values that were calculated using the multiple regression equations were incorporated as dependent and independent variables, respectively.Multiple linear regression analyses showed that the four SNPs, PPL, and weight were retained as independent predictors of 24-h postoperative fentanyl use (R² = 0.145, P = 5.66 × 10⁻¹⁰ and the two SNPs and weight were retained as independent predictors of perioperative fentanyl use (R² = 0.185, P = 1.99 × 10⁻¹⁵. Simple linear regression analyses showed that the predicted values were retained as an independent predictor of actual 24-h postoperative analgesic use (R² = 0.033, P = 0.030 and perioperative analgesic use (R² = 0.100, P = 1.09 × 10⁻⁴, respectively.We constructed

  19. TRMM-based Merged Data Products Compared to Global Precipitation Climatology Project (GPCP) Analyses

    Science.gov (United States)

    Adler, Robert F.; Huffman, George J.; Bolvin, David; Curtis, Scott

    1999-01-01

    This paper describes recent results of using Tropical Rainfall Measuring Mission (TRMM) (launched in November 1997) information as the key calibration tool; in a merged analysis on a 1 degree x l degree latitude/longitude monthly scale based on multiple satellite sources and raingauge analyses. The TRMM-based product will be compared with the community-based Global Precipitation Climatology Project (GPCP) results. The long-term GPCP analysis is compared to the new TRMM-based analysis which uses the most accurate TRMM information to calibrate the estimates from the Special Sensor Microwave/Imager (SSM/I) and geosynchronous IR observations and merges those estimates together with the TRMM and gauge information to produce accurate rainfall estimates with the increased sampling provided by the combined satellite information. The comparison with TRMM results on a month-to-month basis should clarify the strengths and weaknesses of the long-term GPCP product in the tropics and point to how to improve the monitoring analysis. Preliminary results from the TRMM merged satellite analysis indicates close agreement with the GPCP estimates. By the time of the meeting over a year of TRMM products will be available for comparison. Global tropical and regional values will be compared. Seasonal variations, and variations associated with the 1998 El Nino/Southern Oscillation ENSO event will be examined and compared between the two analyses. These variations will be examined carefully and validated where possible from surface-based radar and gauge observations. The role of TRMM observations in the refinement of the long-term monitoring product will be outlined.

  20. Real-time Bacterial Detection by Single Cell Based Sensors UsingSynchrotron FTIR Spectromicroscopy

    Energy Technology Data Exchange (ETDEWEB)

    Veiseh, Mandana; Veiseh, Omid; Martin, Michael C.; Bertozzi,Carolyn; Zhang, Miqin

    2005-08-10

    Microarrays of single macrophage cell based sensors weredeveloped and demonstrated for real time bacterium detection bysynchrotron FTIR microscopy. The cells were patterned on gold-SiO2substrates via a surface engineering technique by which the goldelectrodes were immobilized with fibronectin to mediate cell adhesion andthe silicon oxide background were passivated with PEG to resist proteinadsorption and cell adhesion. Cellular morphology and IR spectra ofsingle, double, and triple cells on gold electrodes exposed tolipopolysaccharide (LPS) of different concentrations were compared toreveal the detection capabilities of these biosensors. The single-cellbased sensors were found to generate the most significant IR wave numbervariation and thus provide the highest detection sensitivity. Changes inmorphology and IR spectrum for single cells exposed to LPS were found tobe time- and concentration-dependent and correlated with each other verywell. FTIR spectra from single cell arrays of gold electrodes withsurface area of 25 mu-m2, 100 mu-m2, and 400 mu-m2 were acquired usingboth synchrotron and conventional FTIR spectromicroscopes to study thesensitivity of detection. The results indicated that the developedsingle-cell platform can be used with conventional FTIRspectromicroscopy. This technique provides real-time, label-free, andrapid bacterial detection, and may allow for statistic and highthroughput analyses, and portability.

  1. Wavelet-based spatial comparison technique for analysing and evaluating two-dimensional geophysical model fields

    Directory of Open Access Journals (Sweden)

    S. Saux Picart

    2011-11-01

    Full Text Available Complex numerical models of the Earth's environment, based around 3-D or 4-D time and space domains are routinely used for applications including climate predictions, weather forecasts, fishery management and environmental impact assessments. Quantitatively assessing the ability of these models to accurately reproduce geographical patterns at a range of spatial and temporal scales has always been a difficult problem to address. However, this is crucial if we are to rely on these models for decision making. Satellite data are potentially the only observational dataset able to cover the large spatial domains analysed by many types of geophysical models. Consequently optical wavelength satellite data is beginning to be used to evaluate model hindcast fields of terrestrial and marine environments. However, these satellite data invariably contain regions of occluded or missing data due to clouds, further complicating or impacting on any comparisons with the model. A methodology has recently been developed to evaluate precipitation forecasts using radar observations. It allows model skill to be evaluated at a range of spatial scales and rain intensities. Here we extend the original method to allow its generic application to a range of continuous and discontinuous geophysical data fields, and therefore allowing its use with optical satellite data. This is achieved through two major improvements to the original method: (i all thresholds are determined based on the statistical distribution of the input data, so no a priori knowledge about the model fields being analysed is required and (ii occluded data can be analysed without impacting on the metric results. The method can be used to assess a model's ability to simulate geographical patterns over a range of spatial scales. We illustrate how the method provides a compact and concise way of visualising the degree of agreement between spatial features in two datasets. The application of the new method, its

  2. Genome-based comparative analyses of Antarctic and temperate species of Paenibacillus.

    Directory of Open Access Journals (Sweden)

    Melissa Dsouza

    Full Text Available Antarctic soils represent a unique environment characterised by extremes of temperature, salinity, elevated UV radiation, low nutrient and low water content. Despite the harshness of this environment, members of 15 bacterial phyla have been identified in soils of the Ross Sea Region (RSR. However, the survival mechanisms and ecological roles of these phyla are largely unknown. The aim of this study was to investigate whether strains of Paenibacillus darwinianus owe their resilience to substantial genomic changes. For this, genome-based comparative analyses were performed on three P. darwinianus strains, isolated from gamma-irradiated RSR soils, together with nine temperate, soil-dwelling Paenibacillus spp. The genome of each strain was sequenced to over 1,000-fold coverage, then assembled into contigs totalling approximately 3 Mbp per genome. Based on the occurrence of essential, single-copy genes, genome completeness was estimated at approximately 88%. Genome analysis revealed between 3,043-3,091 protein-coding sequences (CDSs, primarily associated with two-component systems, sigma factors, transporters, sporulation and genes induced by cold-shock, oxidative and osmotic stresses. These comparative analyses provide an insight into the metabolic potential of P. darwinianus, revealing potential adaptive mechanisms for survival in Antarctic soils. However, a large proportion of these mechanisms were also identified in temperate Paenibacillus spp., suggesting that these mechanisms are beneficial for growth and survival in a range of soil environments. These analyses have also revealed that the P. darwinianus genomes contain significantly fewer CDSs and have a lower paralogous content. Notwithstanding the incompleteness of the assemblies, the large differences in genome sizes, determined by the number of genes in paralogous clusters and the CDS content, are indicative of genome content scaling. Finally, these sequences are a resource for further

  3. FluxExplorer: A general platform for modeling and analyses of metabolic networks based on stoichiometry

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    Stoichiometry-based analyses of meta- bolic networks have aroused significant interest of systems biology researchers in recent years. It is necessary to develop a more convenient modeling platform on which users can reconstruct their network models using completely graphical operations, and explore them with powerful analyzing modules to get a better understanding of the properties of metabolic systems. Herein, an in silico platform, FluxExplorer, for metabolic modeling and analyses based on stoichiometry has been developed as a publicly available tool for systems biology research. This platform integrates various analytic approaches, in- cluding flux balance analysis, minimization of meta- bolic adjustment, extreme pathways analysis, shadow prices analysis, and singular value decom- position, providing a thorough characterization of the metabolic system. Using a graphic modeling process, metabolic networks can be reconstructed and modi- fied intuitively and conveniently. The inconsistencies of a model with respect to the FBA principles can be proved automatically. In addition, this platform sup- ports systems biology markup language (SBML). FluxExplorer has been applied to rebuild a metabolic network in mammalian mitochondria, producing meaningful results. Generally, it is a powerful and very convenient tool for metabolic network modeling and analysis.

  4. Performance Analyses of Renewable and Fuel Power Supply Systems for Different Base Station Sites

    Directory of Open Access Journals (Sweden)

    Josip Lorincz

    2014-11-01

    Full Text Available Base station sites (BSSs powered with renewable energy sources have gained the attention of cellular operators during the last few years. This is because such “green” BSSs impose significant reductions in the operational expenditures (OPEX of telecom operators due to the possibility of on-site renewable energy harvesting. In this paper, the green BSSs power supply system parameters detected through remote and centralized real time sensing are presented. An implemented sensing system based on a wireless sensor network enables reliable collection and post-processing analyses of many parameters, such as: total charging/discharging current of power supply system, battery voltage and temperature, wind speed, etc. As an example, yearly sensing results for three different BSS configurations powered by solar and/or wind energy are discussed in terms of renewable energy supply (RES system performance. In the case of powering those BSS with standalone systems based on a fuel generator, the fuel consumption models expressing interdependence among the generator load and fuel consumption are proposed. This has allowed energy-efficiency comparison of the fuel powered and RES systems, which is presented in terms of the OPEX and carbon dioxide (CO2 reductions. Additionally, approaches based on different BSS air-conditioning systems and the on/off regulation of a daily fuel generator activity are proposed and validated in terms of energy and capital expenditure (CAPEX savings.

  5. SIMULATION MODEL BASED ON IACS DATA; ALTERNATIVE APPROACH TO ANALYSE SECTORAL INCOME RISK IN AGRICULTURE

    Directory of Open Access Journals (Sweden)

    Jaka ZGAJNAR

    2016-04-01

    Full Text Available We develop a static simulation model to analyse income losses and income risks at aggregated agriculture sector level. Our empirical case study is based on farm level records for direct payments claims (IACS data and covers the period 2010–2011. Using Monte Carlo simulations, we investigate the impact of different levels of risk on income trends. Results show that 80% of farms are extremely dependent on direct payments. Farm production types highly supported by direct payments consequentially fall into the low-risk group. Results show that a significant share of income loss at sector level is carried by small farms (by economic class. Average probability of larger losses at the sector level ranges between 2% and 64%. Our results also indicate that larger farms often have better risk-return ratios and thus face lower relative income risks.

  6. Static and dynamic stress analyses of the prototype high head Francis runner based on site measurement

    Science.gov (United States)

    Huang, X.; Oram, C.; Sick, M.

    2014-03-01

    More efforts are put on hydro-power to balance voltage and frequency within seconds for primary control in modern smart grids. This requires hydraulic turbines to run at off-design conditions. especially at low load or speed-no load. Besides. the tendency of increasing power output and decreasing weight of the turbine runners has also led to the high level vibration problem of the runners. especially high head Francis runners. Therefore. it is important to carry out the static and dynamic stress analyses of prototype high head Francis runners. This paper investigates the static and dynamic stresses on the prototype high head Francis runner based on site measurements and numerical simulations. The site measurements are performed with pressure transducers and strain gauges. Based on the measured results. computational fluid dynamics (CFD) simulations for the flow channel from stay vane to draft tube cone are performed. Static pressure distributions and dynamic pressure pulsations caused by rotor-stator interaction (RSI) are obtained under various operating conditions. With the CFD results. static and dynamic stresses on the runner at different operating points are calculated by means of the finite element method (FEM). The agreement between simulation and measurement is analysed with linear regression method. which indicates that the numerical result agrees well with that of measurement. Furthermore. the maximum static and dynamic stresses on the runner blade are obtained at various operating points. The relations of the maximum stresses and the power output are discussed in detail. The influences of the boundary conditions on the structural behaviour of the runner are also discussed.

  7. A unified set-based test with adaptive filtering for gene-environment interaction analyses.

    Science.gov (United States)

    Liu, Qianying; Chen, Lin S; Nicolae, Dan L; Pierce, Brandon L

    2016-06-01

    In genome-wide gene-environment interaction (GxE) studies, a common strategy to improve power is to first conduct a filtering test and retain only the SNPs that pass the filtering in the subsequent GxE analyses. Inspired by two-stage tests and gene-based tests in GxE analysis, we consider the general problem of jointly testing a set of parameters when only a few are truly from the alternative hypothesis and when filtering information is available. We propose a unified set-based test that simultaneously considers filtering on individual parameters and testing on the set. We derive the exact distribution and approximate the power function of the proposed unified statistic in simplified settings, and use them to adaptively calculate the optimal filtering threshold for each set. In the context of gene-based GxE analysis, we show that although the empirical power function may be affected by many factors, the optimal filtering threshold corresponding to the peak of the power curve primarily depends on the size of the gene. We further propose a resampling algorithm to calculate P-values for each gene given the estimated optimal filtering threshold. The performance of the method is evaluated in simulation studies and illustrated via a genome-wide gene-gender interaction analysis using pancreatic cancer genome-wide association data. PMID:26496228

  8. Secondary Data Analyses of Subjective Outcome Evaluation Data Based on Nine Databases

    Directory of Open Access Journals (Sweden)

    Daniel T. L. Shek

    2012-01-01

    Full Text Available The purpose of this study was to evaluate the effectiveness of the Tier 1 Program of the Project P.A.T.H.S. (Positive Adolescent Training through Holistic Social Programmes in Hong Kong by analyzing 1,327 school-based program reports submitted by program implementers. In each report, program implementers were invited to write down five conclusions based on an integration of the subjective outcome evaluation data collected from the program participants and program implementers. Secondary data analyses were carried out by aggregating nine databases, with 14,390 meaningful units extracted from 6,618 conclusions. Results showed that most of the conclusions were positive in nature. The findings generally showed that the workers perceived the program and program implementers to be positive, and they also pointed out that the program could promote holistic development of the program participants in societal, familial, interpersonal, and personal aspects. However, difficulties encountered during program implementation (2.15% and recommendations for improvement were also reported (16.26%. In conjunction with the evaluation findings based on other strategies, the present study suggests that the Tier 1 Program of the Project P.A.T.H.S. is beneficial to the holistic development of the program participants.

  9. Comprehensive logic based analyses of Toll-like receptor 4 signal transduction pathway.

    Directory of Open Access Journals (Sweden)

    Mahesh Kumar Padwal

    Full Text Available Among the 13 TLRs in the vertebrate systems, only TLR4 utilizes both Myeloid differentiation factor 88 (MyD88 and Toll/Interleukin-1 receptor (TIR-domain-containing adapter interferon-β-inducing Factor (TRIF adaptors to transduce signals triggering host-protective immune responses. Earlier studies on the pathway combined various experimental data in the form of one comprehensive map of TLR signaling. But in the absence of adequate kinetic parameters quantitative mathematical models that reveal emerging systems level properties and dynamic inter-regulation among the kinases/phosphatases of the TLR4 network are not yet available. So, here we used reaction stoichiometry-based and parameter independent logical modeling formalism to build the TLR4 signaling network model that captured the feedback regulations, interdependencies between signaling kinases and phosphatases and the outcome of simulated infections. The analyses of the TLR4 signaling network revealed 360 feedback loops, 157 negative and 203 positive; of which, 334 loops had the phosphatase PP1 as an essential component. The network elements' interdependency (positive or negative dependencies in perturbation conditions such as the phosphatase knockout conditions revealed interdependencies between the dual-specific phosphatases MKP-1 and MKP-3 and the kinases in MAPK modules and the role of PP2A in the auto-regulation of Calmodulin kinase-II. Our simulations under the specific kinase or phosphatase gene-deficiency or inhibition conditions corroborated with several previously reported experimental data. The simulations to mimic Yersinia pestis and E. coli infections identified the key perturbation in the network and potential drug targets. Thus, our analyses of TLR4 signaling highlights the role of phosphatases as key regulatory factors in determining the global interdependencies among the network elements; uncovers novel signaling connections; identifies potential drug targets for

  10. Mitochondrial DNA-Based Analyses of Relatedness Among Turkeys, Meleagris gallopavo.

    Science.gov (United States)

    Guan, Xiaojing; Silva, Pradeepa; Gyenai, Kwaku; Xu, Jun; Geng, Tuoyu; Smith, Edward

    2015-04-01

    The domesticated turkey, Meleagris gallopavo, is believed to be a single breed with several varieties whose relatedness and origins remain poorly understood. Using the mitochondrial genome sequence (GenBank accession no. EF153719) that our group first reported, we investigated the relationships among 15 of the most widely occurring turkey varieties using D-loop and 16S RNA sequences. We included, as a non-traditional outgroup, mtDNA sequence information from wild turkey varieties. A total of 24 SNPs, including 18 in the D-loop and 6 in the 16S rRNA, was identified, validated and used. Of the 15 haplotypes detected based on these SNPs, 7 were unique to wild turkeys. Nucleotide diversity estimates were relatively low when compared to those reported for chickens and other livestock. Network and phylogenetic analyses showed a closer relationship among heritage varieties than between heritage and wild turkeys. The mtDNA data provide additional evidence that suggest a recent divergence of turkey varieties.

  11. Ecology of Subglacial Lake Vostok (Antarctica, Based on Metagenomic/Metatranscriptomic Analyses of Accretion Ice

    Directory of Open Access Journals (Sweden)

    Tom D'Elia

    2013-03-01

    Full Text Available Lake Vostok is the largest of the nearly 400 subglacial Antarctic lakes and has been continuously buried by glacial ice for 15 million years. Extreme cold, heat (from possible hydrothermal activity, pressure (from the overriding glacier and dissolved oxygen (delivered by melting meteoric ice, in addition to limited nutrients and complete darkness, combine to produce one of the most extreme environments on Earth. Metagenomic/metatranscriptomic analyses of ice that accreted over a shallow embayment and over the southern main lake basin indicate the presence of thousands of species of organisms (94% Bacteria, 6% Eukarya, and two Archaea. The predominant bacterial sequences were closest to those from species of Firmicutes, Proteobacteria and Actinobacteria, while the predominant eukaryotic sequences were most similar to those from species of ascomycetous and basidiomycetous Fungi. Based on the sequence data, the lake appears to contain a mixture of autotrophs and heterotrophs capable of performing nitrogen fixation, nitrogen cycling, carbon fixation and nutrient recycling. Sequences closest to those of psychrophiles and thermophiles indicate a cold lake with possible hydrothermal activity. Sequences most similar to those from marine and aquatic species suggest the presence of marine and freshwater regions.

  12. Phylogenetic analyses of some genera in Oedipodidae (Orthoptera: Acridoidea) based on 16S mitochondrial partialgene sequences

    Institute of Scientific and Technical Information of China (English)

    Xiang-Chu Yin; Xin-Jiang Li; Wen-Qiang Wang; Hong Yin; Cheng-Quan Cao; Bao-Hua Ye; Zhan Yin

    2008-01-01

    Based on the 16S mitochondrial partial gene sequences of 29 genera, containing 26 from Oedipodidae and one each from Tanaoceridae, Pyrgomorphidae and Tetrigidae (as outgroups), the homologus sequences were compared and phylogenetic analyses were performed. A phylogenetic tree was inferred by neighbor-joining (N J). The results of sequences compared show that: (i) in a total of 574 bp of Oedipodidae, the number of substituted nucleotides was 265 bp and the average percentages ofT, C, A and G were 38.3%,11.4%, 31.8% and 18.5%, respectively, and the content of A+T (70.1%) was distinctly richer than that of C+G (29.9%); and (ii) the average nucleotide divergence of 16S rDNA sequences among genera of Oedipodidae were 9.0%, among families of Acridoidea were 17.0%, and between superfamilies (Tetrigoidea and Acridoidea) were 23.9%, respectively. The phylogenetic tree indicated: (i) the Oedipodidae was a monophyletic group, which suggested that the taxonomic status of this family was confLrrned; (ii) the genus Heteropternis separated from the other Oedipodids first and had another unique sound-producing structure in morphology, which is the type-genus of subfamily Heteropterninae; and (iii) the relative intergeneric relationship within the same continent was closer than that of different continents, and between the Eurasian genera and the African genera, was closer than that between Eurasians and Americans.

  13. PASMet: a web-based platform for prediction, modelling and analyses of metabolic systems.

    Science.gov (United States)

    Sriyudthsak, Kansuporn; Mejia, Ramon Francisco; Arita, Masanori; Hirai, Masami Yokota

    2016-07-01

    PASMet (Prediction, Analysis and Simulation of Metabolic networks) is a web-based platform for proposing and verifying mathematical models to understand the dynamics of metabolism. The advantages of PASMet include user-friendliness and accessibility, which enable biologists and biochemists to easily perform mathematical modelling. PASMet offers a series of user-functions to handle the time-series data of metabolite concentrations. The functions are organised into four steps: (i) Prediction of a probable metabolic pathway and its regulation; (ii) Construction of mathematical models; (iii) Simulation of metabolic behaviours; and (iv) Analysis of metabolic system characteristics. Each function contains various statistical and mathematical methods that can be used independently. Users who may not have enough knowledge of computing or programming can easily and quickly analyse their local data without software downloads, updates or installations. Users only need to upload their files in comma-separated values (CSV) format or enter their model equations directly into the website. Once the time-series data or mathematical equations are uploaded, PASMet automatically performs computation on server-side. Then, users can interactively view their results and directly download them to their local computers. PASMet is freely available with no login requirement at http://pasmet.riken.jp/ from major web browsers on Windows, Mac and Linux operating systems.

  14. Analysing breast cancer microarrays from African Americans using shrinkage-based discriminant analysis

    Directory of Open Access Journals (Sweden)

    Pang Herbert

    2010-10-01

    Full Text Available Abstract Breast cancer tumours among African Americans are usually more aggressive than those found in Caucasian populations. African-American patients with breast cancer also have higher mortality rates than Caucasian women. A better understanding of the disease aetiology of these breast cancers can help to improve and develop new methods for cancer prevention, diagnosis and treatment. The main goal of this project was to identify genes that help differentiate between oestrogen receptor-positive and -negative samples among a small group of African-American patients with breast cancer. Breast cancer microarrays from one of the largest genomic consortiums were analysed using 13 African-American and 201 Caucasian samples with oestrogen receptor status. We used a shrinkage-based classification method to identify genes that were informative in discriminating between oestrogen receptor-positive and -negative samples. Subset analysis and permutation were performed to obtain a set of genes unique to the African-American population. We identified a set of 156 probe sets, which gave a misclassification rate of 0.16 in distinguishing between oestrogen receptor-positive and -negative patients. The biological relevance of our findings was explored through literature-mining techniques and pathway mapping. An independent dataset was used to validate our findings and we found that the top ten genes mapped onto this dataset gave a misclassification rate of 0.15. The described method allows us best to utilise the information available from small sample size microarray data in the context of ethnic minorities.

  15. PASMet: a web-based platform for prediction, modelling and analyses of metabolic systems.

    Science.gov (United States)

    Sriyudthsak, Kansuporn; Mejia, Ramon Francisco; Arita, Masanori; Hirai, Masami Yokota

    2016-07-01

    PASMet (Prediction, Analysis and Simulation of Metabolic networks) is a web-based platform for proposing and verifying mathematical models to understand the dynamics of metabolism. The advantages of PASMet include user-friendliness and accessibility, which enable biologists and biochemists to easily perform mathematical modelling. PASMet offers a series of user-functions to handle the time-series data of metabolite concentrations. The functions are organised into four steps: (i) Prediction of a probable metabolic pathway and its regulation; (ii) Construction of mathematical models; (iii) Simulation of metabolic behaviours; and (iv) Analysis of metabolic system characteristics. Each function contains various statistical and mathematical methods that can be used independently. Users who may not have enough knowledge of computing or programming can easily and quickly analyse their local data without software downloads, updates or installations. Users only need to upload their files in comma-separated values (CSV) format or enter their model equations directly into the website. Once the time-series data or mathematical equations are uploaded, PASMet automatically performs computation on server-side. Then, users can interactively view their results and directly download them to their local computers. PASMet is freely available with no login requirement at http://pasmet.riken.jp/ from major web browsers on Windows, Mac and Linux operating systems. PMID:27174940

  16. Linking Proxy-Based and Datum-Based Shorelines on a High-Energy Coastline: Implications for Shoreline Change Analyses

    Science.gov (United States)

    Ruggiero, P.; Kaminsky, G.M.; Gelfenbaum, G.

    2003-01-01

    A primary purpose of this paper is to quantitatively link variously defined and derived shoreline estimates commonly used for shoreline change analysis. Estimates of shoreline mapping and derivation error, natural shoreline variability, and the relationships between horizontally-derived (proxy-based) shorelines to vertical datums (e.g. MHW) are presented. A series of shoreline repeatability and variability experiments as well as data from a beach monitoring program along the high-energy US Pacific Northwest coast, indicate total uncertainty estimates of the horizontal position of proxy-based shorelines to be approximately ?? 50-150 m for T-sheets and aerial photography and approximately ?? 15 m for datum-based shorelines derived from ground- or air-based topographic surveys. The ability to obtain reliable shoreline change results depends upon both the selected shoreline definition (e.g. horizontal- or feature-based proxy, or datum-based intercept) and the accuracy of the technique used in mapping or interpreting its position. The position of the selected shoreline on the beach profile determines its inherent temporal and spatial variability, an important consideration that has often been overlooked in the scientific literature on shoreline change, Historical shorelines mapped on NOS T-sheets and aerial photos have commonly identified high water line (HWL)-type shorelines, which are shown to be higher on the beach surface than the MHW-datum intercept along coasts subject to wave runup. Analyses of 4.5 years of beach profile data from the southwest Washington coast suggest that both the MHW and HWL-type shorelines have greater natural short-term variability than expected, significantly greater than the variability of shoreline proxies defined farther landward and higher on the beach profile. A model for determining the natural variability of HWL-type shorelines reveals that this short-term variability is the dominant factor in the large total uncertainty values

  17. Analysing the operative experience of basic surgical trainees in Ireland using a web-based logbook

    LENUS (Irish Health Repository)

    Lonergan, Peter E

    2011-09-25

    Abstract Background There is concern about the adequacy of operative exposure in surgical training programmes, in the context of changing work practices. We aimed to quantify the operative exposure of all trainees on the National Basic Surgical Training (BST) programme in Ireland and compare the results with arbitrary training targets. Methods Retrospective analysis of data obtained from a web-based logbook (http:\\/\\/www.elogbook.org) for all general surgery and orthopaedic training posts between July 2007 and June 2009. Results 104 trainees recorded 23,918 operations between two 6-month general surgery posts. The most common general surgery operation performed was simple skin excision with trainees performing an average of 19.7 (± 9.9) over the 2-year training programme. Trainees most frequently assisted with cholecystectomy with an average of 16.0 (± 11.0) per trainee. Comparison of trainee operative experience to arbitrary training targets found that 2-38% of trainees achieved the targets for 9 emergency index operations and 24-90% of trainees achieved the targets for 8 index elective operations. 72 trainees also completed a 6-month post in orthopaedics and recorded 7,551 operations. The most common orthopaedic operation that trainees performed was removal of metal, with an average of 2.90 (± 3.27) per trainee. The most common orthopaedic operation that trainees assisted with was total hip replacement, with an average of 10.46 (± 6.21) per trainee. Conclusions A centralised web-based logbook provides valuable data to analyse training programme performance. Analysis of logbooks raises concerns about operative experience at junior trainee level. The provision of adequate operative exposure for trainees should be a key performance indicator for training programmes.

  18. Validation of a fully autonomous phosphate analyser based on a microfluidic lab-on-a-chip

    DEFF Research Database (Denmark)

    Slater, Conor; Cleary, J.; Lau, K.T.;

    2010-01-01

    This work describes the design of a phosphate analyser that utilises a microfluidic lab-on-a-chip. The analyser contains all the required chemical storage, pumping and electronic components to carry out a complete phosphate assay. The system is self-calibrating and self-cleaning, thus capable...

  19. Application of Rank(S-r), a maturity index based on chemical analyses of coals

    Energy Technology Data Exchange (ETDEWEB)

    Suggate, R.P. [Inst. for Geology & Nuclear Science, Lower Hutt (New Zealand)

    2002-09-01

    The Rank{sub S} classification of Suggate, which uses data from standard coal industry chemical analyses, is illustrated on interdependent diagrams with axes of atomic O/C and H/C and of calorific value and volatile matter. The Rank{sub S-r} scale, which is compensated for coal type, is linear with depth under conditions of linear geothermal gradients, so that the depth value for each unit increase in rank depends on the geothermal gradient at the time of maximum temperature. A general relation is established between Rank(Sr) and the temperature of attainment of rank: Temp.{sup o}C = 10 x Rank{sub S-r} + 15. Significant oil generation begins at Rank({sub S-r}) 9-10 and expulsion at Rank{sub S-r} 11.5-12.5. A clear general relation exists between Rank{sub S-r} and vitrinite reflectance, but Rank{sub S-r} is somewhat more accurate over the range from peat to the end of the oil window. In the Paleogene Buller Coalfield, New Zealand, the use of Rank{sub S-r} is an aid to interpeting geological history. Coals in the Carboniferous Nottinghamshire-Yorkshire Coalfield in England probably contributed hydrocarbons, including oil, to the adjoining East Midlands hydrocarbon fields. Vertical and lateral variations in Rank{sub S-r} in the coalfield, and the Rank{sub S-r} values in coal measures at the base of the Permian, require a thick Mesozoic-Tertiary cover. In the oilfields of the Mahakam Delta, Indonesia, and the Taranaki Basin, New Zealand, Rank{sub S-r}/depth gradients imply surface values that are close to zero where little or no cover has been eroded from above the wells, and inferred temperatures that are reasonably close to present temperatures.

  20. Fatigue analyses of the prototype Francis runners based on site measurements and simulations

    Science.gov (United States)

    Huang, X.; Chamberland-Lauzon, J.; Oram, C.; Klopfer, A.; Ruchonnet, N.

    2014-03-01

    With the increasing development of solar power and wind power which give an unstable output to the electrical grid, hydropower is required to give a rapid and flexible compensation, and the hydraulic turbines have to operate at off-design conditions frequently. Prototype Francis runners suffer from strong vibrations induced by high pressure pulsations at part load, low part load, speed-no-load and during start-stops and load rejections. Fatigue and damage may be caused by the alternating stress on the runner blades. Therefore, it becomes increasingly important to carry out fatigue analysis and life time assessment of the prototype Francis runners, especially at off-design conditions. This paper presents the fatigue analyses of the prototype Francis runners based on the strain gauge site measurements and numerical simulations. In the case of low part load, speed-no-load and transient events, since the Francis runners are subjected to complex hydraulic loading, which shows a stochastic characteristic, the rainflow counting method is used to obtain the number of cycles for various dynamic amplitude ranges. From middle load to full load, pressure pulsations caused by Rotor-stator- Interaction become the dominant hydraulic excitation of the runners. Forced response analysis is performed to calculate the maximum dynamic stress. The agreement between numerical and experimental stresses is evaluated using linear regression method. Taking into account the effect of the static stress on the S-N curve, the Miner's rule, a linear cumulative fatigue damage theory, is employed to calculate the damage factors of the prototype Francis runners at various operating conditions. The relative damage factors of the runners at different operating points are compared and discussed in detail.

  1. Molecular Characterization of Five Potyviruses Infecting Korean Sweet Potatoes Based on Analyses of Complete Genome Sequences

    Directory of Open Access Journals (Sweden)

    Hae-Ryun Kwak

    2015-12-01

    Full Text Available Sweet potatoes (Ipomea batatas L. are grown extensively, in tropical and temperate regions, and are important food crops worldwide. In Korea, potyviruses, including Sweet potato feathery mottle virus (SPFMV, Sweet potato virus C (SPVC, Sweet potato virus G (SPVG, Sweet potato virus 2 (SPV2, and Sweet potato latent virus (SPLV, have been detected in sweet potato fields at a high (~95% incidence. In the present work, complete genome sequences of 18 isolates, representing the five potyviruses mentioned above, were compared with previously reported genome sequences. The complete genomes consisted of 10,081 to 10,830 nucleotides, excluding the poly-A tails. Their genomic organizations were typical of the Potyvirus genus, including one target open reading frame coding for a putative polyprotein. Based on phylogenetic analyses and sequence comparisons, the Korean SPFMV isolates belonged to the strains RC and O with >98% nucleotide sequence identity. Korean SPVC isolates had 99% identity to the Japanese isolate SPVC-Bungo and 70% identity to the SPFMV isolates. The Korean SPVG isolates showed 99% identity to the three previously reported SPVG isolates. Korean SPV2 isolates had 97% identity to the SPV2 GWB-2 isolate from the USA. Korean SPLV isolates had a relatively low (88% nucleotide sequence identity with the Taiwanese SPLV-TW isolates, and they were phylogenetically distantly related to SPFMV isolates. Recombination analysis revealed that possible recombination events occurred in the P1, HC-Pro and NIa-NIb regions of SPFMV and SPLV isolates and these regions were identified as hotspots for recombination in the sweet potato potyviruses.

  2. Fatigue analyses of the prototype Francis runners based on site measurements and simulations

    International Nuclear Information System (INIS)

    With the increasing development of solar power and wind power which give an unstable output to the electrical grid, hydropower is required to give a rapid and flexible compensation, and the hydraulic turbines have to operate at off-design conditions frequently. Prototype Francis runners suffer from strong vibrations induced by high pressure pulsations at part load, low part load, speed-no-load and during start-stops and load rejections. Fatigue and damage may be caused by the alternating stress on the runner blades. Therefore, it becomes increasingly important to carry out fatigue analysis and life time assessment of the prototype Francis runners, especially at off-design conditions. This paper presents the fatigue analyses of the prototype Francis runners based on the strain gauge site measurements and numerical simulations. In the case of low part load, speed-no-load and transient events, since the Francis runners are subjected to complex hydraulic loading, which shows a stochastic characteristic, the rainflow counting method is used to obtain the number of cycles for various dynamic amplitude ranges. From middle load to full load, pressure pulsations caused by Rotor-stator- Interaction become the dominant hydraulic excitation of the runners. Forced response analysis is performed to calculate the maximum dynamic stress. The agreement between numerical and experimental stresses is evaluated using linear regression method. Taking into account the effect of the static stress on the S-N curve, the Miner's rule, a linear cumulative fatigue damage theory, is employed to calculate the damage factors of the prototype Francis runners at various operating conditions. The relative damage factors of the runners at different operating points are compared and discussed in detail

  3. A Comparison of Model- and Multiple Imputation-Based Approaches to Longitudinal Analyses with Partial Missingness.

    Science.gov (United States)

    Duncan, Terry E.; Duncan, Susan C.; Li, Fuzhong

    1998-01-01

    Presents an application of latent growth curve methodology to the analysis of longitudinal developmental change in alcohol consumption of 586 young adults, illustrating three approaches to the analysis of missing data: (1) multiple-sample structural equation modeling procedures; (2) raw maximum likelihood analyses; and (3) multiple modeling and…

  4. Conformational determination of [Leu]enkephalin based on theoretical and experimental VA and VCD spectral analyses

    DEFF Research Database (Denmark)

    Abdali, Salim; Jalkanen, Karl J.; Cao, X.;

    2004-01-01

    Conformational determination of [Leu]enkephalin in DMSO-d6 is carried out using VA and VCD spectral analyses. Conformational energies, vibrational frequencies and VA and VCD intensities are calculated using DFT at B3LYP/6-31G* level of theory. Comparison between the measured spectra and the spect...

  5. Comparing Surface-Based and Volume-Based Analyses of Functional Neuroimaging Data in Patients with Schizophrenia

    Science.gov (United States)

    Anticevic, Alan; Dierker, Donna L.; Gillespie, Sarah K.; Repovs, Grega; Csernansky, John G.; Van Essen, David C.; Barch, Deanna M.

    2008-01-01

    A major challenge in functional neuroimaging is to cope with individual variability in cortical structure and function. Most analyses of cortical function compensate for variability using affine or low-dimensional nonlinear volume-based registration (VBR) of individual subjects to an atlas, which does not explicitly take into account the geometry of cortical convolutions. A promising alternative is to use surface-based registration (SBR), which capitalizes on explicit surface representations of cortical folding patterns in individual subjects. In this study, we directly compare results from SBR and affine VBR in a study of working memory in healthy controls and patients with schizophrenia (SCZ). Each subject's structural scan was used for cortical surface reconstruction using the SureFit method. fMRI data were mapped directly onto individual cortical surface models, and each hemisphere was registered to the population-average PALS-B12 atlas using landmark-constrained SBR. The precision with which cortical sulci were aligned was much greater for SBR than VBR. SBR produced superior alignment precision across the entire cortex, and this benefit was greater in patients with schizophrenia. We demonstrate that spatial smoothing on the surface provides better resolution and signal preservation than a comparable degree of smoothing in the volume domain. Lastly, the statistical power of functional activation in the working memory task was greater for SBR than for VBR. These results indicate that SBR provides significant advantages over affine VBR when analyzing cortical fMRI activations. Furthermore, these improvements can be even greater in disorders that have associated structural abnormalities. PMID:18434199

  6. Indoor carbon dioxide concentrations and sick building syndrome symptoms in the BASE study revisited: Analyses of the 100 building dataset

    Energy Technology Data Exchange (ETDEWEB)

    Erdmann, Christine A.; Steiner, Kate C.; Apte, Michael G.

    2002-02-01

    In previously published analyses of the 41-building 1994-1996 USEPA Building Assessment Survey and Evaluation (BASE) dataset, higher workday time-averaged indoor minus outdoor CO{sub 2} concentrations (dCO{sub 2}) were associated with increased prevalence of certain mucous membrane and lower respiratory sick building syndrome (SBS) symptoms, even at peak dCO{sub 2} concentrations below 1,000 ppm. For this paper, similar analyses were performed using the larger 100-building 1994-1998 BASE dataset. Multivariate logistic regression analyses quantified the associations between dCO{sub 2} and the SBS symptoms, adjusting for age, sex, smoking status, presence of carpet in workspace, thermal exposure, relative humidity, and a marker for entrained automobile exhaust. Adjusted dCO{sub 2} prevalence odds ratios for sore throat and wheeze were 1.17 and 1.20 per 100-ppm increase in dCO{sub 2} (p <0.05), respectively. These new analyses generally support our prior findings. Regional differences in climate, building design, and operation may account for some of the differences observed in analyses of the two datasets.

  7. A (not so) dangerous method: pXRF vs. EPMA-WDS analyses of copper-based artefacts

    OpenAIRE

    Orfanou, V.; Rehren, T.

    2014-01-01

    Analysis of metal objects with portable and handheld X-ray fluorescence spectrometry has become increasingly popular in recent years. Here, methodological concerns that apply to non-destructive, surface examination with XRF instruments of ancient metal artefacts are discussed based on the comparative analyses of a set of copper-based objects by means of portable X-ray fluorescence (pXRF) and electron probe microanalyser (EPMA). The analytical investigation aims to explore issues of instrument...

  8. Implementation Quality of a Positive Youth Development Program: Cross-Case Analyses Based on Seven Cases in Hong Kong

    OpenAIRE

    Shek, Daniel T. L.; Sun, Rachel C. F.

    2008-01-01

    Cross-case analyses of factors that influence the process and implementation quality of the Tier 1 Program of the Project P.A.T.H.S. based on seven cases were carried out. Systematic and integrative analyses revealed several conclusions. First, several factors related to policy, people, program, process, and place (5 “P”s) were conducive to the successful implementation of the Tier 1 Program in the schools. Second, there were obstacles and difficulties with reference to the 5 “P”s that impede...

  9. The comparison of classification analyses on the public opinion focus of biofuels based on twitter

    Science.gov (United States)

    Wu, Shianghau; Guo, Jiannjong

    2016-02-01

    The study combined with the text mining and classification methodology to investigate the biofuels related tweets on the social network so as to understand the general public opinion focus. The contribution of the study enclosed the subsequent two points. First, the study utilized the text mining method to explore the content of biofuels connected tweets on the famed social network "twitter" and found the main keywords consistent with their frequencies. Second, the study applied the Back Propagation Neural Network (BPN), random forests model and two sorts of hybrid algorithmclassification analyses to compare the classification results.

  10. Palindrome analyser - A new web-based server for predicting and evaluating inverted repeats in nucleotide sequences.

    Science.gov (United States)

    Brázda, Václav; Kolomazník, Jan; Lýsek, Jiří; Hároníková, Lucia; Coufal, Jan; Št'astný, Jiří

    2016-09-30

    DNA cruciform structures play an important role in the regulation of natural processes including gene replication and expression, as well as nucleosome structure and recombination. They have also been implicated in the evolution and development of diseases such as cancer and neurodegenerative disorders. Cruciform structures are formed by inverted repeats, and their stability is enhanced by DNA supercoiling and protein binding. They have received broad attention because of their important roles in biology. Computational approaches to study inverted repeats have allowed detailed analysis of genomes. However, currently there are no easily accessible and user-friendly tools that can analyse inverted repeats, especially among long nucleotide sequences. We have developed a web-based server, Palindrome analyser, which is a user-friendly application for analysing inverted repeats in various DNA (or RNA) sequences including genome sequences and oligonucleotides. It allows users to search and retrieve desired gene/nucleotide sequence entries from the NCBI databases, and provides data on length, sequence, locations and energy required for cruciform formation. Palindrome analyser also features an interactive graphical data representation of the distribution of the inverted repeats, with options for sorting according to the length of inverted repeat, length of loop, and number of mismatches. Palindrome analyser can be accessed at http://bioinformatics.ibp.cz. PMID:27603574

  11. Scaling and Spectral Analyses Based on Spatial Correlation Functions of Urban Form

    CERN Document Server

    Chen, Yanguang

    2012-01-01

    Urban form has been empirically demonstrated to be of scaling invariance and can be described with fractal geometry. However, the valid range of fractal dimension and the relationships between various fractal indicators of cities are not yet revealed in theory. Especially, systematic methods of spatial analysis have not yet been developed for fractal cities. By mathematical deduction and transformation (e.g. Fourier transform), I find that scaling analysis, spectral analysis, and spatial correlation analysis are all associated with fractal concepts and can be integrated into a new approach to fractal analysis of cities. This method can be termed '3S analyses' of urban form. Using the 3S analysis, I derived a set of fractal parameter equations, by which different fractal parameters of cities can be linked up with one another. Each fractal parameter has its own reasonable range of values. According to the fractal parameter equations, the intersection of the rational ranges of different fractal parameters sugges...

  12. Predictability of the monthly North Atlantic Oscillation index based on fractal analyses and dynamic system theory

    Directory of Open Access Journals (Sweden)

    M. D. Martínez

    2010-03-01

    Full Text Available The predictability of the monthly North Atlantic Oscillation, NAO, index is analysed from the point of view of different fractal concepts and dynamic system theory such as lacunarity, rescaled analysis (Hurst exponent and reconstruction theorem (embedding and correlation dimensions, Kolmogorov entropy and Lyapunov exponents. The main results point out evident signs of randomness and the necessity of stochastic models to represent time evolution of the NAO index. The results also show that the monthly NAO index behaves as a white-noise Gaussian process. The high minimum number of nonlinear equations needed to describe the physical process governing the NAO index fluctuations is evidence of its complexity. A notable predictive instability is indicated by the positive Lyapunov exponents. Besides corroborating the complex time behaviour of the NAO index, present results suggest that random Cantor sets would be an interesting tool to model lacunarity and time evolution of the NAO index.

  13. Activity Based Learning in a Freshman Global Business Course: Analyses of Preferences and Demographic Differences

    Science.gov (United States)

    Levine, Mark F.; Guy, Paul W.

    2007-01-01

    The present study investigates pre-business students' reaction to Activity Based Learning in a lower division core required course entitled Introduction to Global Business in the business curriculum at California State University Chico. The study investigates students' preference for Activity Based Learning in comparison to a more traditional…

  14. Variability Abstractions: Trading Precision for Speed in Family-Based Analyses

    DEFF Research Database (Denmark)

    Dimovski, Aleksandar; Brabrand, Claus; Wasowski, Andrzej

    2015-01-01

    Family-based (lifted) data-flow analysis for Software Product Lines (SPLs) is capable of analyzing all valid products (variants) without generating any of them explicitly. It takes as input only the common code base, which encodes all variants of a SPL, and produces analysis results corresponding...

  15. Developing computational model-based diagnostics to analyse clinical chemistry data

    NARCIS (Netherlands)

    Schalkwijk, D.B. van; Bochove, K. van; Ommen, B. van; Freidig, A.P.; Someren, E.P. van; Greef, J. van der; Graaf, A.A. de

    2010-01-01

    This article provides methodological and technical considerations to researchers starting to develop computational model-based diagnostics using clinical chemistry data.These models are of increasing importance, since novel metabolomics and proteomics measuring technologies are able to produce large

  16. Exploring the World of Agent-Based Simulations: Simple Models, Complex Analyses

    OpenAIRE

    Sanchez, Susan M.; Lucas, Thomas W.

    2002-01-01

    Proceedings of the 2002 Winter Simulation Conference E. Yücesan, C.-H. Chen, J. L. Snowdon, and J. M. Charnes, eds. Agent-based simulations are models where multiple entities sense and stochastically respond to conditions in their local environments, mimicking complex large-scale system behavior. We provide an overview of some important issues in the modeling and analysis of agent-based systems. Examples are drawn from a range of fields: biological modeling, sociologic...

  17. Analyses of Research Topics in the Field of Informetrics Based on the Method of Topic Modeling

    Directory of Open Access Journals (Sweden)

    Sung-Chien Lin

    2014-07-01

    Full Text Available In this study, we used the approach of topic modeling to uncover the possible structure of research topics in the field of Informetrics, to explore the distribution of the topics over years, and to compare the core journals. In order to infer the structure of the topics in the field, the data of the papers published in the Journal of Informetricsand Scientometrics during 2007 to 2013 are retrieved from the database of the Web of Science as input of the approach of topic modeling. The results of this study show that when the number of topics was set to 10, the topic model has the smallest perplexity. Although data scopes and analysis methodsare different to previous studies, the generating topics of this study are consistent with those results produced by analyses of experts. Empirical case studies and measurements of bibliometric indicators were concerned important in every year during the whole analytic period, and the field was increasing stability. Both the two core journals broadly paid more attention to all of the topics in the field of Informetrics. The Journal of Informetricsput particular emphasis on construction and applications ofbibliometric indicators and Scientometrics focused on the evaluation and the factors of productivity of countries, institutions, domains, and journals.

  18. Comparative UPLC-QTOF-MS-based metabolomics and bioactivities analyses of Garcinia oblongifolia.

    Science.gov (United States)

    Li, Ping; AnandhiSenthilkumar, Harini; Wu, Shi-biao; Liu, Bo; Guo, Zhi-yong; Fata, Jimmie E; Kennelly, Edward J; Long, Chun-lin

    2016-02-01

    Garcinia oblongifolia Champ. ex Benth. (Clusiaceae) is a well-known medicinal plant from southern China, with edible fruits. However, the phytochemistry and bioactivity of the different plant parts of G. oblongifolia have not been studied extensively. Comparative metabolic profiling and bioactivities of the leaf, branch, and fruit of G. oblongifolia were investigated. A total of 40 compounds such as biflavonoids, xanthones, and benzophenones were identified using UPLC-QTOF-MS and MS(E), including 15 compounds reported for the first time from this species. Heatmap analyses found that benzophenones, xanthones, and biflavonoids were predominately found in branches, with benzophenones present in relatively high concentrations in all three plant parts. Xanthones were found to have limited distribution in fruit while biflavonoids were present at only low levels in leaves. In addition, the cytotoxic (MCF-7 breast cancer cell line) and antioxidant (ABTS and DPPH chemical tests) activities of the crude extracts of G. oblongifolia indicate that the branch extract exhibits greater bioactivity than either the leaf or the fruit extracts. Orthogonal partial least squares discriminate analysis was used to find 12 marker compounds, mainly xanthones, from the branches, including well-known antioxidants and cytotoxic agents. These G. oblongifolia results revealed that the variation in metabolite profiles can be correlated to the differences in bioactivity of the three plant parts investigated. This UPLC-QTOF-MS strategy can be useful to identify bioactive constituents expressed differentially in the various plant parts of a single species. PMID:26773895

  19. Safety assessment of historical masonry churches based on pre-assigned kinematic limit analysis, FE limit and pushover analyses

    Energy Technology Data Exchange (ETDEWEB)

    Milani, Gabriele, E-mail: milani@stru.polimi.it; Valente, Marco, E-mail: milani@stru.polimi.it [Department of Architecture, Built Environment and Construction Engineering (ABC), Politecnico di Milano, Piazza Leonardo da Vinci 32, 20133 Milan (Italy)

    2014-10-06

    This study presents some results of a comprehensive numerical analysis on three masonry churches damaged by the recent Emilia-Romagna (Italy) seismic events occurred in May 2012. The numerical study comprises: (a) pushover analyses conducted with a commercial code, standard nonlinear material models and two different horizontal load distributions; (b) FE kinematic limit analyses performed using a non-commercial software based on a preliminary homogenization of the masonry materials and a subsequent limit analysis with triangular elements and interfaces; (c) kinematic limit analyses conducted in agreement with the Italian code and based on the a-priori assumption of preassigned failure mechanisms, where the masonry material is considered unable to withstand tensile stresses. All models are capable of giving information on the active failure mechanism and the base shear at failure, which, if properly made non-dimensional with the weight of the structure, gives also an indication of the horizontal peak ground acceleration causing the collapse of the church. The results obtained from all three models indicate that the collapse is usually due to the activation of partial mechanisms (apse, façade, lateral walls, etc.). Moreover the horizontal peak ground acceleration associated to the collapse is largely lower than that required in that seismic zone by the Italian code for ordinary buildings. These outcomes highlight that structural upgrading interventions would be extremely beneficial for the considerable reduction of the seismic vulnerability of such kind of historical structures.

  20. Syntheses,Structure Analyses and Thermal Stabilities of Two Schiff Base Metal Complexes

    Institute of Scientific and Technical Information of China (English)

    ZHANG Yinli; CHEN Sanping; FAN Guang; ZHAO Zhijie; GAO Shengli

    2009-01-01

    A Schiff base ligand 1-salicylideneamino-l,3,4-triazole(L)was prepared.Two new complexes with Schiff base,takes a mononuclear zinc structure and the coordination geometry of zinc atom exhibits a distorted tetrahedron,in which a zig-zag chain is constructed through hydrogen bonding interactions.A 2D supramolecular network is formed through π-π stacking between triazole planes and phenyl planes of adjacent chains,and a 3D supramolecular network is further constructed by these non-covalent π-π stacking interactions between the triazole planes of neighboring layers.Complex 2 takes a dinuclear structure with the bidentate-bridging Schiff base ligands,and cobalt site exhibits a distorted octahedron.The lattice water molecules and neutral complex 2 units form a dimer with hydrogen bonding interactions.In addition,IR and thermal gravimetric analysis are presented.

  1. G-BASE data conditioning procedures for stream sediment and soil chemical analyses

    OpenAIRE

    T. R. Lister; Johnson, C C

    2005-01-01

    Data conditioning is the process of making data fit for the purpose for which it is to be used and forms a significant component of the G-BASE project. This report is part of a series of manuals to record G-BASE project methodology. For data conditioning this has been difficult as applications used for processing data and the way in which data are reported continue to evolve rapidly and sections of this report have had to be continually updated to reflect this fact. However, the principals of...

  2. Development of gas chromatographic methods for the analyses of organic carbonate-based electrolytes

    Science.gov (United States)

    Terborg, Lydia; Weber, Sascha; Passerini, Stefano; Winter, Martin; Karst, Uwe; Nowak, Sascha

    2014-01-01

    In this work, novel methods based on gas chromatography (GC) for the investigation of common organic carbonate-based electrolyte systems are presented, which are used in lithium ion batteries. The methods were developed for flame ionization detection (FID), mass spectrometric detection (MS). Further, headspace (HS) sampling for the investigation of solid samples like electrodes is reported. Limits of detection are reported for FID. Finally, the developed methods were applied to the electrolyte system of commercially available lithium ion batteries as well as on in-house assembled cells.

  3. Analysing a Web-Based E-Commerce Learning Community: A Case Study in Brazil.

    Science.gov (United States)

    Joia, Luiz Antonio

    2002-01-01

    Demonstrates the use of a Web-based participative virtual learning environment for graduate students in Brazil enrolled in an electronic commerce course in a Masters in Business Administration program. Discusses learning communities; computer-supported collaborative work and collaborative learning; influences on student participation; the role of…

  4. Horticulture III, IV, and V. Task Analyses. Competency-Based Education.

    Science.gov (United States)

    Henrico County Public Schools, Glen Allen, VA. Virginia Vocational Curriculum Center.

    This task analysis guide is intended to help teachers and administrators develop instructional materials and implement competency-based education in the horticulture program. Section 1 contains a validated task inventory for horticulture III, IV, and V. For each task, applicable information pertaining to performance and enabling objectives,…

  5. Intra-specific genetic relationship analyses of Elaeagnus angustifolia based on RP-HPLC biochemical markers

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    Elaeagnus angustifolia Linn. has various ecological, medicinal and economical uses. An approach was established using RP-HPLC (reversed-phase high-performance liquid chromatography) to classify and analyse the intra-specific genetic relationships of seventeen populations of E. angustifolia, collected from the Xinjiang areas of China. Chromatograms of alcohol-soluble proteins produced by seventeen populations ofE. angustifolia, were compared. Each chromatogram of alcohol-soluble proteins came from a single seed of one wild plant only. The results showed that when using a Waters Delta Pak. C18, 5 μm particle size reversed phase column (150 mm×3.9 mm), a linear gradient of 25%~60% solvent B with flow rate of 1 ml/min and run time of 67 min, the chromatography yielded optimum separation ofE. angustifolia alcohol-soluble proteins. Representative peaks in each population were chosen according to peak area and occurrence in every seed. The converted data on the elution peaks of each population were different and could be used to represent those populations. GSC (genetic similarity coefficients) of 41% to 62% showed a medium degree of genetic diversity among the populations in these eco-areas. Cluster analysis showed that the seventeen populations ofE. angustifolia could be divided into six clusters at the GSC=0.535 level and indicated the general and unique biochemical markers of these clusters. We suggest that E. angustifolia distribution in these eco-areas could be classified into six variable species. RP-HPLC was shown to be a rapid, repeatable and reliable method for E. angustifolia classification and identification and for analysis of genetic diversity.

  6. Improving the safety of a body composition analyser based on the PGNAA method.

    Science.gov (United States)

    Miri-Hakimabad, Hashem; Izadi-Najafabadi, Reza; Vejdani-Noghreiyan, Alireza; Panjeh, Hamed

    2007-12-01

    The 252Cf radioisotope and 241Am-Be are intense neutron emitters that are readily encapsulated in compact, portable and sealed sources. Some features such as high flux of neutron emission and reliable neutron spectrum of these sources make them suitable for the prompt gamma neutron activation analysis (PGNAA) method. The PGNAA method can be used in medicine for neutron radiography and body chemical composition analysis. 252Cf and 241Am-Be sources generate not only neutrons but also are intense gamma emitters. Furthermore, the sample in medical treatments is a human body, so it may be exposed to the bombardments of these gamma-rays. Moreover, accumulations of these high-rate gamma-rays in the detector volume cause simultaneous pulses that can be piled up and distort the spectra in the region of interest (ROI). In order to remove these disadvantages in a practical way without being concerned about losing the thermal neutron flux, a gamma-ray filter made of Pb must be employed. The paper suggests a relatively safe body chemical composition analyser (BCCA) machine that uses a spherical Pb shield, enclosing the neutron source. Gamma-ray shielding effects and the optimum radius of the spherical Pb shield have been investigated, using the MCNP-4C code, and compared with the unfiltered case, the bare source. Finally, experimental results demonstrate that an optimised gamma-ray shield for the neutron source in a BCCA can reduce effectively the risk of exposure to the 252Cf and 241Am-Be sources. PMID:18268376

  7. Improving the safety of a body composition analyser based on the PGNAA method

    International Nuclear Information System (INIS)

    The 252Cf radioisotope and 241Am-Be are intense neutron emitters that are readily encapsulated in compact, portable and sealed sources. Some features such as high flux of neutron emission and reliable neutron spectrum of these sources make them suitable for the prompt gamma neutron activation analysis (PGNAA) method. The PGNAA method can be used in medicine for neutron radiography and body chemical composition analysis. 252Cf and 241Am-Be sources generate not only neutrons but also are intense gamma emitters. Furthermore, the sample in medical treatments is a human body, so it may be exposed to the bombardments of these gamma-rays. Moreover, accumulations of these high-rate gamma-rays in the detector volume cause simultaneous pulses that can be piled up and distort the spectra in the region of interest (ROI). In order to remove these disadvantages in a practical way without being concerned about losing the thermal neutron flux, a gamma-ray filter made of Pb must be employed. The paper suggests a relatively safe body chemical composition analyser (BCCA) machine that uses a spherical Pb shield, enclosing the neutron source. Gamma-ray shielding effects and the optimum radius of the spherical Pb shield have been investigated, using the MCNP-4C code, and compared with the unfiltered case, the bare source. Finally, experimental results demonstrate that an optimised gamma-ray shield for the neutron source in a BCCA can reduce effectively the risk of exposure to the 252Cf and 241Am-Be sources

  8. Improving the safety of a body composition analyser based on the PGNAA method

    Energy Technology Data Exchange (ETDEWEB)

    Miri-Hakimabad, Hashem; Izadi-Najafabadi, Reza; Vejdani-Noghreiyan, Alireza; Panjeh, Hamed [FUM Radiation Detection And Measurement Laboratory, Ferdowsi University of Mashhad (Iran, Islamic Republic of)

    2007-12-15

    The {sup 252}Cf radioisotope and {sup 241}Am-Be are intense neutron emitters that are readily encapsulated in compact, portable and sealed sources. Some features such as high flux of neutron emission and reliable neutron spectrum of these sources make them suitable for the prompt gamma neutron activation analysis (PGNAA) method. The PGNAA method can be used in medicine for neutron radiography and body chemical composition analysis. {sup 252}Cf and {sup 241}Am-Be sources generate not only neutrons but also are intense gamma emitters. Furthermore, the sample in medical treatments is a human body, so it may be exposed to the bombardments of these gamma-rays. Moreover, accumulations of these high-rate gamma-rays in the detector volume cause simultaneous pulses that can be piled up and distort the spectra in the region of interest (ROI). In order to remove these disadvantages in a practical way without being concerned about losing the thermal neutron flux, a gamma-ray filter made of Pb must be employed. The paper suggests a relatively safe body chemical composition analyser (BCCA) machine that uses a spherical Pb shield, enclosing the neutron source. Gamma-ray shielding effects and the optimum radius of the spherical Pb shield have been investigated, using the MCNP-4C code, and compared with the unfiltered case, the bare source. Finally, experimental results demonstrate that an optimised gamma-ray shield for the neutron source in a BCCA can reduce effectively the risk of exposure to the {sup 252}Cf and {sup 241}Am-Be sources.

  9. White matter disruption in moderate/severe pediatric traumatic brain injury: Advanced tract-based analyses

    Directory of Open Access Journals (Sweden)

    Emily L. Dennis

    2015-01-01

    Full Text Available Traumatic brain injury (TBI is the leading cause of death and disability in children and can lead to a wide range of impairments. Brain imaging methods such as DTI (diffusion tensor imaging are uniquely sensitive to the white matter (WM damage that is common in TBI. However, higher-level analyses using tractography are complicated by the damage and decreased FA (fractional anisotropy characteristic of TBI, which can result in premature tract endings. We used the newly developed autoMATE (automated multi-atlas tract extraction method to identify differences in WM integrity. 63 pediatric patients aged 8–19 years with moderate/severe TBI were examined with cross sectional scanning at one or two time points after injury: a post-acute assessment 1–5 months post-injury and a chronic assessment 13–19 months post-injury. A battery of cognitive function tests was performed in the same time periods. 56 children were examined in the first phase, 28 TBI patients and 28 healthy controls. In the second phase 34 children were studied, 17 TBI patients and 17 controls (27 participants completed both post-acute and chronic phases. We did not find any significant group differences in the post-acute phase. Chronically, we found extensive group differences, mainly for mean and radial diffusivity (MD and RD. In the chronic phase, we found higher MD and RD across a wide range of WM. Additionally, we found correlations between these WM integrity measures and cognitive deficits. This suggests a distributed pattern of WM disruption that continues over the first year following a TBI in children.

  10. [Analyses of biogenic related compounds based on intramolecular excimer-forming fluorescence derivatization].

    Science.gov (United States)

    Yoshida, Hideyuki

    2003-08-01

    A highly selective and sensitive method based on a novel concept is introduced for the assay of biological substances. This method is based on an intramolecular excimer-forming fluorescence derivatization with a pyrene reagent, followed by reverse-phase HPLC. Polyamines, polyphenols, and dicarboxylic acids, which have two or more reactive functional groups in a molecule, were converted to the corresponding polypyrene-labeled derivatives by reaction with the appropriate pyrene reagent. The derivatives exhibited intramolecular excimer fluorescence (440-520 nm), which can clearly be discriminated from the monomer (normal) fluorescence (360-420 nm) emitted by pyrene reagents and monopyrene-labeled derivatives of monofunctional compounds. With excimer fluorescence detection, highly selective and sensitive determination of polyamines, polyphenols, and dicarboxylic acids can be achieved. Furthermore, the methods were successfully applied to the determination of various biological and environmental substances in real samples, which require only a small amount of sample and simple pretreatment.

  11. Critical experiments analyses by using 70 energy group library based on ENDF/B-VI

    Energy Technology Data Exchange (ETDEWEB)

    Tahara, Yoshihisa; Matsumoto, Hideki [Mitsubishi Heavy Industries Ltd., Yokohama (Japan). Nuclear Energy Systems Engineering Center; Huria, H.C.; Ouisloumen, M.

    1998-03-01

    The newly developed 70-group library has been validated by comparing kinf from a continuous energy Monte-Carlo code MCNP and two dimensional spectrum calculation code PHOENIX-CP. The code employs Discrete Angular Flux Method based on Collision Probability. The library has been also validated against a large number of critical experiments and numerical benchmarks for assemblies with MOX and Gd fuels. (author)

  12. Optimised procedure to analyse maillard reaction-associated fluorescence in cereal-based products

    OpenAIRE

    Delgado Andrade, Cristina; Rufián Henares, J. A.; Morales, F. J.

    2008-01-01

    Fluorescent Maillard compounds measurement provides more specific information on the extent of the Maillard reaction than other unspecific tools to monitor the reaction, and is suitable, as the first approach, to assess the nutritional quality of foods as related to protein damage. This work presents an optimised laboratory procedure for the measurement of total fluorescent intermediate compounds (FIC) associated with Maillard reaction, described and evaluated in a cereal-based product. Total...

  13. Energetic and Exergetic Performance Analyses of Solar Dish Based CO2 Combined Cycle

    OpenAIRE

    Mukhopadhyay, Soumitra; Ghosh, Sudip

    2014-01-01

    This paper presents a conceptual configuration of a solar dish based combined cycle power plant with a topping gas turbine block and a bottoming steam turbine cycle coupled through a heat recovery steam generator (HRSG). Carbon dioxide has been considered as the working fluid for the topping cycle and it has been considered in gaseous state all through the cycle. Two-stage compression has been proposed for the carbon dioxide cycle. The conventional GT combustion chamber is replaced by a high-...

  14. Generation and Nonlinear Dynamical Analyses of Fractional-Order Memristor-Based Lorenz Systems

    OpenAIRE

    Huiling Xi; Yuxia Li; Xia Huang

    2014-01-01

    In this paper, four fractional-order memristor-based Lorenz systems with the flux-controlled memristor characterized by a monotone-increasing piecewise linear function, a quadratic nonlinearity, a smooth continuous cubic nonlinearity and a quartic nonlinearity are presented, respectively. The nonlinear dynamics are analyzed by using numerical simulation methods, including phase portraits, bifurcation diagrams, the largest Lyapunov exponent and power spectrum diagrams. Some interesting phenome...

  15. UniPrimer: A Web-Based Primer Design Tool for Comparative Analyses of Primate Genomes

    OpenAIRE

    Nomin Batnyam; Jimin Lee; Jungnam Lee; Seung Bok Hong; Sejong Oh; Kyudong Han

    2012-01-01

    Whole genome sequences of various primates have been released due to advanced DNA-sequencing technology. A combination of computational data mining and the polymerase chain reaction (PCR) assay to validate the data is an excellent method for conducting comparative genomics. Thus, designing primers for PCR is an essential procedure for a comparative analysis of primate genomes. Here, we developed and introduced UniPrimer for use in those studies. UniPrimer is a web-based tool that designs PCR-...

  16. Extended Distance-based Phylogenetic Analyses Applied to 3D Homo Fossil Skull Evolution

    OpenAIRE

    Waddell, Peter J.

    2014-01-01

    This article shows how 3D geometric morphometric data can be analyzed using newly developed distance-based evolutionary tree inference methods, with extensions to planar graphs. Application of these methods to 3D representations of the skullcap (calvaria) of 13 diverse skulls in the genus Homo, ranging from Homo erectus (ergaster) at about 1.6 mya, all the way forward to modern humans, yields a remarkably clear phylogenetic tree. Various evolutionary hypotheses are tested. Results of these te...

  17. PRODUCTION PROCESS DESIGN OF FUNCTIONAL FOOD PRODUCTS BASED ON FUNCTIONAL VALUE ANALYSES

    OpenAIRE

    Pershakova T. V.; Shubina L. N.; Derenkova I. A.; Naumov N. N.

    2015-01-01

    The article substantiates the feasibility of the method of functional value analysis application to ensure high efficiency for the production of functional food products. This article describes the design technique of food functionality based on the methodology of value analysis, allowing considering such factors as consumer preferences, nutritional, functional value, economic and technological indicators while developing product formulations and technologies. With the example of flour confec...

  18. Using knowledge based micro simulation in analysing the application of legislation

    OpenAIRE

    Svensson, J.S.; Wassink, J.G.J.

    1993-01-01

    The method of knowledge based micro simulation (KBMS) was developed to help determine (ex-ante) the socio-economic consequences of social security legislation. This paper discusses the possibilities of the KBMS method in the proces of ex-post evaluation of legislation, namely in monitoring the application of legislation by the (local) administrative organisations. The two possibilities that are discussed are: - the monitoring of actual compliance with legislation by the administrative organis...

  19. Integrated Genomic and Network-Based Analyses of Complex Diseases and Human Disease Network.

    Science.gov (United States)

    Al-Harazi, Olfat; Al Insaif, Sadiq; Al-Ajlan, Monirah A; Kaya, Namik; Dzimiri, Nduna; Colak, Dilek

    2016-06-20

    A disease phenotype generally reflects various pathobiological processes that interact in a complex network. The highly interconnected nature of the human protein interaction network (interactome) indicates that, at the molecular level, it is difficult to consider diseases as being independent of one another. Recently, genome-wide molecular measurements, data mining and bioinformatics approaches have provided the means to explore human diseases from a molecular basis. The exploration of diseases and a system of disease relationships based on the integration of genome-wide molecular data with the human interactome could offer a powerful perspective for understanding the molecular architecture of diseases. Recently, subnetwork markers have proven to be more robust and reliable than individual biomarker genes selected based on gene expression profiles alone, and achieve higher accuracy in disease classification. We have applied one of these methodologies to idiopathic dilated cardiomyopathy (IDCM) data that we have generated using a microarray and identified significant subnetworks associated with the disease. In this paper, we review the recent endeavours in this direction, and summarize the existing methodologies and computational tools for network-based analysis of complex diseases and molecular relationships among apparently different disorders and human disease network. We also discuss the future research trends and topics of this promising field. PMID:27318646

  20. Integrated Genomic and Network-Based Analyses of Complex Diseases and Human Disease Network.

    Science.gov (United States)

    Al-Harazi, Olfat; Al Insaif, Sadiq; Al-Ajlan, Monirah A; Kaya, Namik; Dzimiri, Nduna; Colak, Dilek

    2016-06-20

    A disease phenotype generally reflects various pathobiological processes that interact in a complex network. The highly interconnected nature of the human protein interaction network (interactome) indicates that, at the molecular level, it is difficult to consider diseases as being independent of one another. Recently, genome-wide molecular measurements, data mining and bioinformatics approaches have provided the means to explore human diseases from a molecular basis. The exploration of diseases and a system of disease relationships based on the integration of genome-wide molecular data with the human interactome could offer a powerful perspective for understanding the molecular architecture of diseases. Recently, subnetwork markers have proven to be more robust and reliable than individual biomarker genes selected based on gene expression profiles alone, and achieve higher accuracy in disease classification. We have applied one of these methodologies to idiopathic dilated cardiomyopathy (IDCM) data that we have generated using a microarray and identified significant subnetworks associated with the disease. In this paper, we review the recent endeavours in this direction, and summarize the existing methodologies and computational tools for network-based analysis of complex diseases and molecular relationships among apparently different disorders and human disease network. We also discuss the future research trends and topics of this promising field.

  1. Financial and Performance Analyses of Microcontroller Based Solar-Powered Autorickshaw for a Developing Country

    Directory of Open Access Journals (Sweden)

    Abu Raihan Mohammad Siddique

    2016-01-01

    Full Text Available This paper presents a case study to examine the economic viability and performance analysis of a microcontroller based solar powered battery operated autorickshaw (m-SBAR, for the developing countries, which is compared with different types of rickshaws such as pedal rickshaw (PR, battery operated autorickshaw (BAR, and solar-powered battery operated autorickshaw (SBAR, available in Bangladesh. The BAR consists of a rickshaw structure, a battery bank, a battery charge controller, a DC motor driver, and a DC motor whereas the proposed m-SBAR contains additional components like solar panel and microcontroller based DC motor driver. The complete design considered the local radiation data and load profile of the proposed m-SBAR. The Levelized Cost of Energy (LCOE analysis, Net Present Worth, payback periods, and Benefit-to-Cost Ratio methods have been used to evaluate the financial feasibility and sensitivity analysis of m-SBAR, grid-powered BAR, and PR. The numerical analysis reveals that LCOE and Benefit-to-Cost Ratio of the proposed m-SBAR are lower compared to the grid-powered BAR. It has also been found that microcontroller based DC motor control circuit reduces battery discharge rate, improves battery life, and controls motor speed efficiency.

  2. Assessing an organizational culture instrument based on the Competing Values Framework: Exploratory and confirmatory factor analyses

    Directory of Open Access Journals (Sweden)

    Mohr David C

    2007-04-01

    Full Text Available Abstract Background The Competing Values Framework (CVF has been widely used in health services research to assess organizational culture as a predictor of quality improvement implementation, employee and patient satisfaction, and team functioning, among other outcomes. CVF instruments generally are presented as well-validated with reliable aggregated subscales. However, only one study in the health sector has been conducted for the express purpose of validation, and that study population was limited to hospital managers from a single geographic locale. Methods We used exploratory and confirmatory factor analyses to examine the underlying structure of data from a CVF instrument. We analyzed cross-sectional data from a work environment survey conducted in the Veterans Health Administration (VHA. The study population comprised all staff in non-supervisory positions. The survey included 14 items adapted from a popular CVF instrument, which measures organizational culture according to four subscales: hierarchical, entrepreneurial, team, and rational. Results Data from 71,776 non-supervisory employees (approximate response rate 51% from 168 VHA facilities were used in this analysis. Internal consistency of the subscales was moderate to strong (α = 0.68 to 0.85. However, the entrepreneurial, team, and rational subscales had higher correlations across subscales than within, indicating poor divergent properties. Exploratory factor analysis revealed two factors, comprising the ten items from the entrepreneurial, team, and rational subscales loading on the first factor, and two items from the hierarchical subscale loading on the second factor, along with one item from the rational subscale that cross-loaded on both factors. Results from confirmatory factor analysis suggested that the two-subscale solution provides a more parsimonious fit to the data as compared to the original four-subscale model. Conclusion This study suggests that there may be problems

  3. Root distribution analyses as a means of improving sensor-based deficit irrigation systems

    Science.gov (United States)

    Kloss, Sebastian; Werisch, Martin; Schütze, Niels

    2014-05-01

    The limited and seasonally variable availability of water and its efficient distribution when growing crops is still an unsolved problem in agriculture. Sensor-based deficit irrigation (DI), where a sensor is used to detect the soil water status and irrigation is provided according to certain threshold values, is one strategy to address that issue. Threshold values are needed that ensure high water productivity and high reliability. A stochastic approach of simulation and optimization in combination with irrigation experiments of drip irrigated maize for model parameterization was used to derive reliable soil water tension threshold values for irrigation control. A weakness of the applied model was the unknown parameterization of the plant root, which had to be included into the optimization besides parameters for the soil only, thus increasing the complexity of the problem. In a follow-up irrigation experiment with the same DI system parameters, focus was put on the investigation of the plant's root distribution in order to improve the validity of the model when determining optimal soil water tension threshold values in sensor-based deficit irrigation systems. Soil samples for a fully and a deficiently irrigated treatment during different stages of plant development were taken and the root density at different depths was determined. The difference in root growth for both treatments are shown and reliable soil water tension threshold values for varying values of irrigation parameters recalculated in a Monte Carlo simulation, after incorporating the new root parameterization into the model. This further improves the significance of derived threshold values and helps to assess possibilities and limitations of this approach when used for investigating the potentials of sensor-based DI systems.

  4. Generation and Nonlinear Dynamical Analyses of Fractional-Order Memristor-Based Lorenz Systems

    Directory of Open Access Journals (Sweden)

    Huiling Xi

    2014-11-01

    Full Text Available In this paper, four fractional-order memristor-based Lorenz systems with the flux-controlled memristor characterized by a monotone-increasing piecewise linear function, a quadratic nonlinearity, a smooth continuous cubic nonlinearity and a quartic nonlinearity are presented, respectively. The nonlinear dynamics are analyzed by using numerical simulation methods, including phase portraits, bifurcation diagrams, the largest Lyapunov exponent and power spectrum diagrams. Some interesting phenomena, such as inverse period-doubling bifurcation and intermittent chaos, are found to exist in the proposed systems.

  5. Eye gaze in intelligent user interfaces gaze-based analyses, models and applications

    CERN Document Server

    Nakano, Yukiko I; Bader, Thomas

    2013-01-01

    Remarkable progress in eye-tracking technologies opened the way to design novel attention-based intelligent user interfaces, and highlighted the importance of better understanding of eye-gaze in human-computer interaction and human-human communication. For instance, a user's focus of attention is useful in interpreting the user's intentions, their understanding of the conversation, and their attitude towards the conversation. In human face-to-face communication, eye gaze plays an important role in floor management, grounding, and engagement in conversation.Eye Gaze in Intelligent User Interfac

  6. Cosmological Analyses Based On The Combined Planck And WMAP Mission Datasets

    Science.gov (United States)

    Bennett, Charles

    We propose to: (1) make a detailed comparison of WMAP, Planck, and other cosmic microwave background (CMB) data to understand areas of conflict, and if possible, resolve them; (2) combine WMAP and Planck data into a unified cosmological dataset; and (3)extend cosmological analyses with the combined data. Recent cosmological measurements have revolutionized cosmology and the CMB has played a crucial role. The Planck mission team just released cosmological data and papers, this on the heels of the WMAP team's release of final nine-year data and papers. This proposal is to compare and attempt to understand the subtle but important differences between the two recently released WMAP and Planck cosmological results, to combine the data so as to benefit from the full available small and larger scale measurements, and to use this to enhance cosmological solutions. The WMAP and Planck CMB cosmology datasets are broadly consistent with one another. Yet, differences exist beyond the fact that Planck data extend to finer angular scales than WMAP data. We propose to go beyond the "quick look" we have done so far to identify and help resolve discrepancies. We provide two examples of the kinds of discrepancies that should be resolved. Even though the Planck data release relied on the absolute calibration established by WMAP the two sets of analyzed data appear to be off by a factor of 0.975. This small but significant discrepancy is difficult to explain and merits investigation. Also, while cosmological parameters from Planck agree with WMAP parameters within 1.1# of the larger WMAP uncertainty, this large a discrepancy is difficult to explain in detail since the cosmic variance uncertainties that play a large role in the parameter uncertainties are common to Planck and WMAP: both missions view the same sky. These are just two examples; additional careful and detailed comparisons are required. Over the course of the last several years a number of scientists around the world

  7. Augmentation of French grunt diet description using combined visual and DNA-based analyses

    Science.gov (United States)

    Hargrove, John S.; Parkyn, Daryl C.; Murie, Debra J.; Demopoulos, Amanda W.J.; Austin, James D.

    2012-01-01

    Trophic linkages within a coral-reef ecosystem may be difficult to discern in fish species that reside on, but do not forage on, coral reefs. Furthermore, dietary analysis of fish can be difficult in situations where prey is thoroughly macerated, resulting in many visually unrecognisable food items. The present study examined whether the inclusion of a DNA-based method could improve the identification of prey consumed by French grunt, Haemulon flavolineatum, a reef fish that possesses pharyngeal teeth and forages on soft-bodied prey items. Visual analysis indicated that crustaceans were most abundant numerically (38.9%), followed by sipunculans (31.0%) and polychaete worms (5.2%), with a substantial number of unidentified prey (12.7%). For the subset of prey with both visual and molecular data, there was a marked reduction in the number of unidentified sipunculans (visual – 31.1%, combined &ndash 4.4%), unidentified crustaceans (visual &ndash 15.6%, combined &ndash 6.7%), and unidentified taxa (visual &ndash 11.1%, combined &ndash 0.0%). Utilising results from both methodologies resulted in an increased number of prey placed at the family level (visual &ndash 6, combined &ndash 33) and species level (visual &ndash 0, combined &ndash 4). Although more costly than visual analysis alone, our study demonstrated the feasibility of DNA-based identification of visually unidentifiable prey in the stomach contents of fish.

  8. Drive-based recording analyses at >800 Gfc/in 2 using shingled recording

    Science.gov (United States)

    William Cross, R.; Montemorra, Michael

    2012-02-01

    Since the introduction of perpendicular recording, conventional perpendicular scaling has enabled the hard disk drive industry to deliver products ranging from ˜130 to well over 500 Gb/in 2 in a little over 4 years. The incredible areal density growth spurt enabled by perpendicular recording is now endangered by an inability to effectively balance writeability with erasure effects at the system level. Shingled magnetic recording (SMR) offers an effective means to continue perpendicular areal density growth using conventional heads and tuned media designs. The use of specially designed edge-write head structures (also known as 'corner writers') should further increase the AD gain potential for shingled recording. In this paper, we will demonstrate the drive-based recording performance characteristics of a shingled recording system at areal densities in excess of 800 Gb/in 2 using a conventional head. Using a production drive base, developmental heads/media and a number of sophisticated analytical routines, we have studied the recording performance of a shingled magnetic recording subsystem. Our observations confirm excellent writeability in excess of 400 ktpi and a perpendicular system with acceptable noise balance, especially at extreme ID and OD skews where the benefits of SMR are quite pronounced. We believe that this demonstration illustrates that SMR is not only capable of productization, but is likely the path of least resistance toward production drive areal density closer to 1 Tb/in 2 and beyond.

  9. Reconstruction of Holocene coastal depositional environments based on sedimentological and palaeontological analyses, Zakynthos Island, Western Greece Mediterranean Sea

    Science.gov (United States)

    Avramidis, Pavlos; Iliopoulos, George; Papadopoulou, Penelope; Nikolaou, Konstantinos; Kontopoulos, Nikolaos; Wijngaarden, Gert

    2014-05-01

    Zakynthos Island is one of the most seismically active regions in Europe and the Holocene coastal depositional environments were influenced both by tectonic activity and sea level rise. In the present study detailed sedimentological, palaeontological and 14C dating analyses were used in order to reconstruct the Holocene coastal depositional environments as well as the different rates of sedimentation, based on data from three cores up to 30 m deep. The results of the analyses indicate changes in depositional environments from marine to brackish lagoonal and lagoon / barrier systems with temporary intrusions of marine water via storms or tsunamigenic events. High sedimentation rates in coastal areas of Zakynthos Island correspond well to the most widespread Holocene warm and humid phases. The interpretation of the sedimentological environments reveals that Zakynthos Island before 8300 BP was constituted by two islands, where the present southern part of the island was separated from the northern one by a shallow and narrow sea channel.

  10. Drive-based recording analyses at >800 Gfc/in{sup 2} using shingled recording

    Energy Technology Data Exchange (ETDEWEB)

    William Cross, R., E-mail: William.r.cross@seagate.com [Seagate Technology, 389 Disc Drive, Longmont, CO 80503 (United States); Montemorra, Michael, E-mail: Mike.r.montemorra@seagate.com [Seagate Technology, 389 Disc Drive, Longmont, CO 80503 (United States)

    2012-02-15

    Since the introduction of perpendicular recording, conventional perpendicular scaling has enabled the hard disk drive industry to deliver products ranging from {approx}130 to well over 500 Gb/in{sup 2} in a little over 4 years. The incredible areal density growth spurt enabled by perpendicular recording is now endangered by an inability to effectively balance writeability with erasure effects at the system level. Shingled magnetic recording (SMR) offers an effective means to continue perpendicular areal density growth using conventional heads and tuned media designs. The use of specially designed edge-write head structures (also known as 'corner writers') should further increase the AD gain potential for shingled recording. In this paper, we will demonstrate the drive-based recording performance characteristics of a shingled recording system at areal densities in excess of 800 Gb/in{sup 2} using a conventional head. Using a production drive base, developmental heads/media and a number of sophisticated analytical routines, we have studied the recording performance of a shingled magnetic recording subsystem. Our observations confirm excellent writeability in excess of 400 ktpi and a perpendicular system with acceptable noise balance, especially at extreme ID and OD skews where the benefits of SMR are quite pronounced. We believe that this demonstration illustrates that SMR is not only capable of productization, but is likely the path of least resistance toward production drive areal density closer to 1 Tb/in{sup 2} and beyond. - Research Highlights: > Drive-based recording demonstrations at 805 Gf/in{sup 2} has been demonstrated using both 95 and 65 mm drive platforms at roughly 430 ktpi and 1.87 Mfci. > Limiting factors for shingled recording include side reading, which is dominated by the reader crosstrack skirt profile, MT10 being a representative metric. > Media jitter and associated DC media SNR further limit areal density, dominated by crosstrack

  11. Optimizing Laguerre expansion based deconvolution methods for analysing bi-exponential fluorescence lifetime images.

    Science.gov (United States)

    Zhang, Yongliang; Chen, Yu; Li, David Day-Uei

    2016-06-27

    Fast deconvolution is an essential step to calibrate instrument responses in big fluorescence lifetime imaging microscopy (FLIM) image analysis. This paper examined a computationally effective least squares deconvolution method based on Laguerre expansion (LSD-LE), recently developed for clinical diagnosis applications, and proposed new criteria for selecting Laguerre basis functions (LBFs) without considering the mutual orthonormalities between LBFs. Compared with the previously reported LSD-LE, the improved LSD-LE allows to use a higher laser repetition rate, reducing the acquisition time per measurement. Moreover, we extended it, for the first time, to analyze bi-exponential fluorescence decays for more general FLIM-FRET applications. The proposed method was tested on both synthesized bi-exponential and realistic FLIM data for studying the endocytosis of gold nanorods in Hek293 cells. Compared with the previously reported constrained LSD-LE, it shows promising results. PMID:27410552

  12. Space nuclear-power reactor design based on combined neutronic and thermal-fluid analyses

    International Nuclear Information System (INIS)

    The design and performance analysis of a space nuclear-power system requires sophisticated analytical capabilities such as those developed during the nuclear rocket propulsion (Rover) program. In particular, optimizing the size of a space nuclear reactor for a given power level requires satisfying the conflicting requirements of nuclear criticality and heat removal. The optimization involves the determination of the coolant void (volume) fraction for which the reactor diameter is a minimum and temperature and structural limits are satisfied. A minimum exists because the critical diameter increases with increasing void fraction, whereas the reactor diameter needed to remove a specified power decreases with void fraction. The purpose of this presentation is to describe and demonstrate our analytical capability for the determination of minimum reactor size. The analysis is based on combining neutronic criticality calculations with OPTION-code thermal-fluid calculations

  13. Surface-Based Analyses of Anatomical Properties of the Visual Cortex in Macular Degeneration.

    Directory of Open Access Journals (Sweden)

    Doety Prins

    Full Text Available Macular degeneration (MD can cause a central visual field defect. In a previous study, we found volumetric reductions along the entire visual pathways of MD patients, possibly indicating degeneration of inactive neuronal tissue. This may have important implications. In particular, new therapeutic strategies to restore retinal function rely on intact visual pathways and cortex to reestablish visual function. Here we reanalyze the data of our previous study using surface-based morphometry (SBM rather than voxel-based morphometry (VBM. This can help determine the robustness of the findings and will lead to a better understanding of the nature of neuroanatomical changes associated with MD.The metrics of interest were acquired by performing SBM analysis on T1-weighted MRI data acquired from 113 subjects: patients with juvenile MD (JMD; n = 34, patients with age-related MD (AMD; n = 24 and healthy age-matched controls (HC; n = 55.Relative to age-matched controls, JMD patients showed a thinner cortex, a smaller cortical surface area and a lower grey matter volume in V1 and V2, while AMD patients showed thinning of the cortex in V2. Neither patient group showed a significant difference in mean curvature of the visual cortex.The thinner cortex, smaller surface area and lower grey matter volume in the visual cortex of JMD patients are consistent with our previous results showing a volumetric reduction in their visual cortex. Finding comparable results using two rather different analysis techniques suggests the presence of marked cortical degeneration in the JMD patients. In the AMD patients, we found a thinner cortex in V2 but not in V1. In contrast to our previous VBM analysis, SBM revealed no volumetric reductions of the visual cortex. This suggests that the cortical changes in AMD patients are relatively subtle, as they apparently can be missed by one of the methods.

  14. Audio-visual perception of 3D cinematography: an fMRI study using condition-based and computation-based analyses.

    Directory of Open Access Journals (Sweden)

    Akitoshi Ogawa

    Full Text Available The use of naturalistic stimuli to probe sensory functions in the human brain is gaining increasing interest. Previous imaging studies examined brain activity associated with the processing of cinematographic material using both standard "condition-based" designs, as well as "computational" methods based on the extraction of time-varying features of the stimuli (e.g. motion. Here, we exploited both approaches to investigate the neural correlates of complex visual and auditory spatial signals in cinematography. In the first experiment, the participants watched a piece of a commercial movie presented in four blocked conditions: 3D vision with surround sounds (3D-Surround, 3D with monaural sound (3D-Mono, 2D-Surround, and 2D-Mono. In the second experiment, they watched two different segments of the movie both presented continuously in 3D-Surround. The blocked presentation served for standard condition-based analyses, while all datasets were submitted to computation-based analyses. The latter assessed where activity co-varied with visual disparity signals and the complexity of auditory multi-sources signals. The blocked analyses associated 3D viewing with the activation of the dorsal and lateral occipital cortex and superior parietal lobule, while the surround sounds activated the superior and middle temporal gyri (S/MTG. The computation-based analyses revealed the effects of absolute disparity in dorsal occipital and posterior parietal cortices and of disparity gradients in the posterior middle temporal gyrus plus the inferior frontal gyrus. The complexity of the surround sounds was associated with activity in specific sub-regions of S/MTG, even after accounting for changes of sound intensity. These results demonstrate that the processing of naturalistic audio-visual signals entails an extensive set of visual and auditory areas, and that computation-based analyses can track the contribution of complex spatial aspects characterizing such life

  15. Audio-visual perception of 3D cinematography: an fMRI study using condition-based and computation-based analyses.

    Science.gov (United States)

    Ogawa, Akitoshi; Bordier, Cecile; Macaluso, Emiliano

    2013-01-01

    The use of naturalistic stimuli to probe sensory functions in the human brain is gaining increasing interest. Previous imaging studies examined brain activity associated with the processing of cinematographic material using both standard "condition-based" designs, as well as "computational" methods based on the extraction of time-varying features of the stimuli (e.g. motion). Here, we exploited both approaches to investigate the neural correlates of complex visual and auditory spatial signals in cinematography. In the first experiment, the participants watched a piece of a commercial movie presented in four blocked conditions: 3D vision with surround sounds (3D-Surround), 3D with monaural sound (3D-Mono), 2D-Surround, and 2D-Mono. In the second experiment, they watched two different segments of the movie both presented continuously in 3D-Surround. The blocked presentation served for standard condition-based analyses, while all datasets were submitted to computation-based analyses. The latter assessed where activity co-varied with visual disparity signals and the complexity of auditory multi-sources signals. The blocked analyses associated 3D viewing with the activation of the dorsal and lateral occipital cortex and superior parietal lobule, while the surround sounds activated the superior and middle temporal gyri (S/MTG). The computation-based analyses revealed the effects of absolute disparity in dorsal occipital and posterior parietal cortices and of disparity gradients in the posterior middle temporal gyrus plus the inferior frontal gyrus. The complexity of the surround sounds was associated with activity in specific sub-regions of S/MTG, even after accounting for changes of sound intensity. These results demonstrate that the processing of naturalistic audio-visual signals entails an extensive set of visual and auditory areas, and that computation-based analyses can track the contribution of complex spatial aspects characterizing such life-like stimuli. PMID

  16. Methodology for definition of yellow fever priority areas, based on environmental variables and multiple correspondence analyses.

    Science.gov (United States)

    Moreno, Eduardo Stramandinoli; Barata, Rita de Cássia Barradas

    2012-01-01

    Yellow fever (YF) is endemic in much of Brazil, where cases of the disease are reported every year. Since 2008, outbreaks of the disease have occurred in regions of the country where no reports had been registered for decades, which has obligated public health authorities to redefine risk areas for the disease. The aim of the present study was to propose a methodology of environmental risk analysis for defining priority municipalities for YF vaccination, using as example, the State of São Paulo, Brazil. The municipalities were divided into two groups (affected and unaffected by YF) and compared based on environmental parameters related to the disease's eco-epidemiology. Bivariate analysis was used to identify statistically significant associations between the variables and virus circulation. Multiple correspondence analysis (MCA) was used to evaluate the relationship among the variables and their contribution to the dynamics of YF in Sao Paulo. The MCA generated a factor that was able to differentiate between affected and unaffected municipalities and was used to determine risk levels. This methodology can be replicated in other regions, standardized, and adapted to each context.

  17. Methodology for definition of yellow fever priority areas, based on environmental variables and multiple correspondence analyses.

    Directory of Open Access Journals (Sweden)

    Eduardo Stramandinoli Moreno

    Full Text Available Yellow fever (YF is endemic in much of Brazil, where cases of the disease are reported every year. Since 2008, outbreaks of the disease have occurred in regions of the country where no reports had been registered for decades, which has obligated public health authorities to redefine risk areas for the disease. The aim of the present study was to propose a methodology of environmental risk analysis for defining priority municipalities for YF vaccination, using as example, the State of São Paulo, Brazil. The municipalities were divided into two groups (affected and unaffected by YF and compared based on environmental parameters related to the disease's eco-epidemiology. Bivariate analysis was used to identify statistically significant associations between the variables and virus circulation. Multiple correspondence analysis (MCA was used to evaluate the relationship among the variables and their contribution to the dynamics of YF in Sao Paulo. The MCA generated a factor that was able to differentiate between affected and unaffected municipalities and was used to determine risk levels. This methodology can be replicated in other regions, standardized, and adapted to each context.

  18. Analyses of Large Coal-Based SOFCs for High Power Stack Block Development

    Energy Technology Data Exchange (ETDEWEB)

    Recknagle, Kurtis P; Koeppel, Brian J

    2010-10-01

    This report summarizes the numerical modeling and analytical efforts for SOFC stack development performed for the coal-based SOFC program. The stack modeling activities began in 2004, but this report focuses on the most relevant results obtained since August 2008. This includes the latter half of Phase-I and all of Phase-II activities under technical guidance of VPS and FCE. The models developed to predict the thermal-flow-electrochemical behaviors and thermal-mechanical responses of generic planar stacks and towers are described. The effects of cell geometry, fuel gas composition, on-cell reforming, operating conditions, cell performance, seal leak, voltage degradation, boundary conditions, and stack height are studied. The modeling activities to evaluate and achieve technical targets for large stack blocks are described, and results from the latest thermal-fluid-electrochemical and structural models are summarized. Modeling results for stack modifications such as scale-up and component thickness reduction to realize cost reduction are presented. Supporting modeling activities in the areas of cell fabrication and loss of contact are also described.

  19. The Core Competitiveness of the Wisdom Tourism Food Analyses Based on the Internet of Things

    Directory of Open Access Journals (Sweden)

    Qingyun Chen

    2015-07-01

    Full Text Available As the world’s largest industry, the tourism Food industry of the world has rapidly developed in recent years. Transferring “digital food” to “wisdom food” means new opportunities and challenges that the sustainable development of the food should face. However, the informational development of this industry still lags behind, the exploitation and utilization of information resources haven’t owned an effective platform, which lack of a benign circulation and interactive mechanism, therefore, to combine the IOT with the food about wisdom has always been a new tendency. This study constructed framework of the tourism Food core competitiveness based on IOT. Then, this study proposed a measurement model for the tourism Food core competitiveness and test the model through exploratory and confirmatory factor analysis, the indicators demonstrate that the model is effective and present that resource protection ability, operation management ability, service ability and Tourism Food service chain integration ability all have influence on the tourism Food core competitiveness.

  20. UniPrimer: A Web-Based Primer Design Tool for Comparative Analyses of Primate Genomes

    Directory of Open Access Journals (Sweden)

    Nomin Batnyam

    2012-01-01

    Full Text Available Whole genome sequences of various primates have been released due to advanced DNA-sequencing technology. A combination of computational data mining and the polymerase chain reaction (PCR assay to validate the data is an excellent method for conducting comparative genomics. Thus, designing primers for PCR is an essential procedure for a comparative analysis of primate genomes. Here, we developed and introduced UniPrimer for use in those studies. UniPrimer is a web-based tool that designs PCR- and DNA-sequencing primers. It compares the sequences from six different primates (human, chimpanzee, gorilla, orangutan, gibbon, and rhesus macaque and designs primers on the conserved region across species. UniPrimer is linked to RepeatMasker, Primer3Plus, and OligoCalc softwares to produce primers with high accuracy and UCSC In-Silico PCR to confirm whether the designed primers work. To test the performance of UniPrimer, we designed primers on sample sequences using UniPrimer and manually designed primers for the same sequences. The comparison of the two processes showed that UniPrimer was more effective than manual work in terms of saving time and reducing errors.

  1. UniPrimer: A Web-Based Primer Design Tool for Comparative Analyses of Primate Genomes.

    Science.gov (United States)

    Batnyam, Nomin; Lee, Jimin; Lee, Jungnam; Hong, Seung Bok; Oh, Sejong; Han, Kyudong

    2012-01-01

    Whole genome sequences of various primates have been released due to advanced DNA-sequencing technology. A combination of computational data mining and the polymerase chain reaction (PCR) assay to validate the data is an excellent method for conducting comparative genomics. Thus, designing primers for PCR is an essential procedure for a comparative analysis of primate genomes. Here, we developed and introduced UniPrimer for use in those studies. UniPrimer is a web-based tool that designs PCR- and DNA-sequencing primers. It compares the sequences from six different primates (human, chimpanzee, gorilla, orangutan, gibbon, and rhesus macaque) and designs primers on the conserved region across species. UniPrimer is linked to RepeatMasker, Primer3Plus, and OligoCalc softwares to produce primers with high accuracy and UCSC In-Silico PCR to confirm whether the designed primers work. To test the performance of UniPrimer, we designed primers on sample sequences using UniPrimer and manually designed primers for the same sequences. The comparison of the two processes showed that UniPrimer was more effective than manual work in terms of saving time and reducing errors. PMID:22693428

  2. SEM-EBSD based Realistic Modeling and Crystallographic Homogenization FE Analyses of LDH Formability Tests

    Science.gov (United States)

    Kuramae, Hiroyuki; Ngoc Tam, Nguyen; Nakamura, Yasunori; Sakamoto, Hidetoshi; Morimoto, Hideo; Nakamachi, Eiji

    2007-05-01

    Homogenization algorithm is introduced to the elastic/crystalline viscoplastic finite element (FE) procedure to develop multi-scale analysis code to predict the formability of sheet metal in macro scale, and simultaneously the crystal texture and hardening evolutions in micro scale. The isotropic and kinematical hardening lows are employed in the crystalline plasticity constitutive equation. For the multi-scale structure, two scales are considered. One is a microscopic polycrystal structure and the other a macroscopic elastic plastic continuum. We measure crystal morphologies by using the scanning electron microscope (SEM) with electron back scattered diffraction (EBSD), and define a three dimensional representative volume element (RVE) of micro ploycrystal structure, which satisfy the periodicity condition of crystal orientation distribution. Since nonlinear multi-scale FE analysis requires large computation time, development of parallel computing technique is needed. To realize the parallel analysis on PC cluster system, the dynamic explicit FE formulations are employed. Applying the domain partitioning technique to FE mesh of macro continuum, homogenized stresses based on micro crystal structures are computed in parallel without solving simultaneous linear equation. The parallel FEM code is applied to simulate the limit dome height (LDH) test problem and hemispherical cup deep drawing problem of aluminum alloy AL6022, mild steel DQSK, high strength steel HSLA, and dual phase steel DP600 sheet metals. The localized distribution of thickness strain and the texture evolution are obtained.

  3. Analysing Amazonian forest productivity using a new individual and trait-based model (TFS v.1

    Directory of Open Access Journals (Sweden)

    N. M. Fyllas

    2014-02-01

    Full Text Available Repeated long-term censuses have revealed large-scale spatial patterns in Amazon Basin forest structure and dynamism, with some forests in the west of the Basin having up to a twice as high rate of aboveground biomass production and tree recruitment as forests in the east. Possible causes for this variation could be the climatic and edaphic gradients across the Basin and/or the spatial distribution of tree species composition. To help understand causes of this variation a new individual-based model of tropical forest growth designed to take full advantage of the forest census data available from the Amazonian Forest Inventory Network (RAINFOR has been developed. The model incorporates variations in tree size distribution, functional traits and soil physical properties and runs at the stand level with four functional traits, leaf dry mass per area (Ma, leaf nitrogen (NL and phosphorus (PL content and wood density (DW used to represent a continuum of plant strategies found in tropical forests. We first applied the model to validate canopy-level water fluxes at three Amazon eddy flux sites. For all three sites the canopy-level water fluxes were adequately simulated. We then applied the model at seven plots, where intensive measurements of carbon allocation are available. Tree-by-tree multi-annual growth rates generally agreed well with observations for small trees, but with deviations identified for large trees. At the stand-level, simulations at 40 plots were used to explore the influence of climate and soil fertility on the gross (ΠG and net (ΠN primary production rates as well as the carbon use efficiency (CU. Simulated ΠG, ΠN and CU were not associated with temperature. However all three measures of stand level productivity were positively related to annual precipitation and soil fertility.

  4. The analyses of extreme climate events over China based on CMIP5 historical and future simulations

    Science.gov (United States)

    Yang, S.; Dong, W.; Feng, J.; Chou, J.

    2013-12-01

    The extreme climate events have a serious influence on human society. Based on observations and 12 simulations from Coupled Model Intercomparison Project Phase 5 (CMIP5), Climatic extremes and their changes over china in history and future scenarios of three Representative Concentration Pathways (RCPs) are analyzed. Because of the background of global warming, in observations, the frost days (FD) and low-temperature threshold days (TN10P) have decreasing trend, and summer days (SU), high-temperature threshold days (TX90P), the heavy precipitation days (R20) and contribution of heavy precipitation days (P95T) show an increasing trend. Most coupled models can basically simulate main characteristics of most extreme indexes. The models reproduce the mean FD and TX90P value best and can give basic trends of the FD, TN10P, SU and TX90P. High correlation coefficients between simulated results and observation are found in FD, SU and P95T. For FD and SU index, most of the models have good ability to capture the spatial differences between the mean state of the 1986-2005 and 1961-1980 periods, but for other indexes, most of models' simulation ability for spatial disparity are not so satisfactory and have to be promoted. Under the high emission scenario of RCP8.5, the century-scale linear changes of Multi-Model Ensembles (MME) for FD, SU, TN10P, TX90P, R20 and P95T are -46.9, 46.0, -27.1, 175.4, 2.9 days and 9.9%, respectively. Due to the complexities of physical process parameterizations and the limitation of forcing data, a large uncertainty still exists in the simulations of climatic extremes. Fig.1 Observed and modeled multi-year average for each index (Dotted line: observation) Table1. Extreme index definition

  5. Analysing Amazonian forest productivity using a new individual and trait-based model (TFS v.1)

    Science.gov (United States)

    Fyllas, N. M.; Gloor, E.; Mercado, L. M.; Sitch, S.; Quesada, C. A.; Domingues, T. F.; Galbraith, D. R.; Torre-Lezama, A.; Vilanova, E.; Ramírez-Angulo, H.; Higuchi, N.; Neill, D. A.; Silveira, M.; Ferreira, L.; Aymard C., G. A.; Malhi, Y.; Phillips, O. L.; Lloyd, J.

    2014-07-01

    Repeated long-term censuses have revealed large-scale spatial patterns in Amazon basin forest structure and dynamism, with some forests in the west of the basin having up to a twice as high rate of aboveground biomass production and tree recruitment as forests in the east. Possible causes for this variation could be the climatic and edaphic gradients across the basin and/or the spatial distribution of tree species composition. To help understand causes of this variation a new individual-based model of tropical forest growth, designed to take full advantage of the forest census data available from the Amazonian Forest Inventory Network (RAINFOR), has been developed. The model allows for within-stand variations in tree size distribution and key functional traits and between-stand differences in climate and soil physical and chemical properties. It runs at the stand level with four functional traits - leaf dry mass per area (Ma), leaf nitrogen (NL) and phosphorus (PL) content and wood density (DW) varying from tree to tree - in a way that replicates the observed continua found within each stand. We first applied the model to validate canopy-level water fluxes at three eddy covariance flux measurement sites. For all three sites the canopy-level water fluxes were adequately simulated. We then applied the model at seven plots, where intensive measurements of carbon allocation are available. Tree-by-tree multi-annual growth rates generally agreed well with observations for small trees, but with deviations identified for larger trees. At the stand level, simulations at 40 plots were used to explore the influence of climate and soil nutrient availability on the gross (ΠG) and net (ΠN) primary production rates as well as the carbon use efficiency (CU). Simulated ΠG, ΠN and CU were not associated with temperature. On the other hand, all three measures of stand level productivity were positively related to both mean annual precipitation and soil nutrient status

  6. Statistical Analyses of Optimum Partial Replacement of Cement by Fly Ash Based on Complete Consumption of Calcium Hydroxide

    Directory of Open Access Journals (Sweden)

    Ouypornprasert Winai

    2016-01-01

    Full Text Available The objectives of this technical paper were to propose the optimum partial replacement of cement by fly ash based on the complete consumption of calcium hydroxide from hydration reactions of cement and the long-term strength activity index based on equivalent calcium silicate hydrate as well as the propagation of uncertainty due to randomness inherent in main chemical compositions in cement and fly ash. Firstly the hydration- and pozzolanic reactions as well as stoichiometry were reviewed. Then the optimum partial replacement of cement by fly ash was formulated. After that the propagation of uncertainty due to main chemical compositions in cement and fly ash was discussed and the reliability analyses for applying the suitable replacement were reviewed. Finally an applicability of the concepts mentioned above based on statistical data of materials available was demonstrated. The results from analyses were consistent with the testing results by other researchers. The results of this study provided guidelines of suitable utilization of fly ash for partial replacement of cement. It was interesting to note that these concepts could be extended to optimize partial replacement of cement by other types of pozzolan which were described in the other papers of the authors.

  7. Using a laser-based CO2 carbon isotope analyser to investigate gas transfer in geological media

    International Nuclear Information System (INIS)

    CO2 stable carbon isotopes are very attractive in environmental research to investigate both natural and anthropogenic carbon sources. Laser-based CO2 carbon isotope analysis provides continuous measurement at high temporal resolution and is a promising alternative to isotope ratio mass spectrometry (IRMS). We performed a thorough assessment of a commercially available CO2 Carbon Isotope Analyser (CCIA DLT-100, Los Gatos Research) that allows in situ measurement of C-13 in CO2. Using a set of reference gases of known CO2 concentration and carbon isotopic composition, we evaluated the precision, long-term stability, temperature sensitivity and concentration dependence of the analyser. Despite good precision calculated from Allan variance (5.0 ppm for CO2 concentration, and 0.05 per thousand for δC-13 at 60 s averaging), real performances are altered by two main sources of error: temperature sensitivity and dependence of C-13 on CO2 concentration. Data processing is required to correct for these errors. Following application of these corrections, we achieve an accuracy of 8.7 ppm for CO2 concentration and 1.3 per thousand for δC-13, which is worse compared to mass spectrometry performance, but still allowing field applications. With this portable analyser we measured CO2 flux degassed from rock in an underground tunnel. The obtained carbon isotopic composition agrees with IRMS measurement, and can be used to identify the carbon source. (authors)

  8. Using a laser-based CO2 carbon isotope analyser to investigate gas transfer in geological media

    Science.gov (United States)

    Guillon, S.; Pili, E.; Agrinier, P.

    2012-05-01

    CO2 stable carbon isotopes are very attractive in environmental research to investigate both natural and anthropogenic carbon sources. Laser-based CO2 carbon isotope analysis provides continuous measurement at high temporal resolution and is a promising alternative to isotope ratio mass spectrometry (IRMS). We performed a thorough assessment of a commercially available CO2 Carbon Isotope Analyser (CCIA DLT-100, Los Gatos Research) that allows in situ measurement of δ 13C in CO2. Using a set of reference gases of known CO2 concentration and carbon isotopic composition, we evaluated the precision, long-term stability, temperature sensitivity and concentration dependence of the analyser. Despite good precision calculated from Allan variance (5.0 ppm for CO2 concentration, and 0.05 ‰ for δ 13C at 60 s averaging), real performances are altered by two main sources of error: temperature sensitivity and dependence of δ 13C on CO2 concentration. Data processing is required to correct for these errors. Following application of these corrections, we achieve an accuracy of 8.7 ppm for CO2 concentration and 1.3 ‰ for δ 13C, which is worse compared to mass spectrometry performance, but still allowing field applications. With this portable analyser we measured CO2 flux degassed from rock in an underground tunnel. The obtained carbon isotopic composition agrees with IRMS measurement, and can be used to identify the carbon source.

  9. Non-target screening analyses of organic contaminants in river systems as a base for monitoring measures

    Science.gov (United States)

    Schwarzbauer, J.

    2009-04-01

    Organic contaminants discharged to the aquatic environment exhibit a high diversity with respect to their molecular structures and the resulting physico-chemical properties. The chemical analysis of anthropogenic contamination in river systems is still an important feature, especially with respect to (i) the identification and structure elucidation of novel contaminants, (ii) to the characterisation of their environmental behaviour and (iii) to their risk for natural systems. A huge proportion of riverine contamination is caused by low-molecular weight organic compounds, like pesticides plasticizers, pharmaceuticals, personal care products, technical additives etc. Some of them, like PCB or PAH have already been investigated thoroughly and, consequently, their behaviour in aqueous systems is very well described. Although analyses on organic substances in river water traditionally focused on selected pollutants, in particular on common priority pollutants which are monitored routinely, the occurrence of further contaminants, e.g. pharmaceuticals, personal care products or chelating agents has received increasing attention within the last decade. Accompanied, screening analyses revealing an enormous diversity of low-molecular weight organic contaminants in waste water effluents and river water become more and more noticed. Since many of these substances have been rarely noticed so far, it will be an important task for the future to study their occurrence and fate in natural environments. Further on, it should be a main issue of environmental studies to provide a comprehensive view on the state of pollution of river water, in particular with respect to lipophilic low molecular weight organic contaminants. However, such non-target-screening analyses has been performed only rarely in the past. Hence, we applied extended non-target screening analyses on longitudinal sections of the rivers Rhine, Rur and Lippe (Germany) on the base of GC/MS analyses. The investigations

  10. The phylogenetic relationship of the family Lutjanidae based on analyses of AFLP and mitochondrial 12S rRNA sequences

    Institute of Scientific and Technical Information of China (English)

    ZHANG Junbin; LIU Xin

    2006-01-01

    Fishes of the family Lutjanidae are commercially important in South China Sea. However,the phylogeny of Lutjanids is still unclear and there are many controversies over it. Herein, studies about the phylogeny of Lutjanids were performed based on Amplified Fragment Length Polymorphism (AFLP) analysis of genome DNA and sequence analysis of mitochondrial 12S rRNA gene, and 10 Lutjanidae species and 1 Lethrinidae species were employed.The topologies of minimum evolution (ME) trees based on the two analyses respectively were congruent except for positions of genera Pristipomoides and Caesio. The optimal substitution model TrN + G for DNA sequences of 12S rRNA genes in Lutjanids was obtained using MODELTEST 3.6 software and maximum likelihood (ML) analysis supports the topology displayed by the ME tree. The test of log-likelihood suggests that the use of molecular clock calibrations to estimate species divergence time appeared valid. Phylogenetic analyses using AFLP data and DNA sequences of mitochondrial 12S rRNA genes indicated the monophyly of Lutjanus genra. However, further studies are required to reveal the phylogenetic relationship among other genera. In addition, the results demonstrated that AFLP genetic marker was suitable for the phylogenetic analysis of Lutjanids.

  11. Spatializing Area-Based Measures of Neighborhood Characteristics for Multilevel Regression Analyses: An Areal Median Filtering Approach.

    Science.gov (United States)

    Oka, Masayoshi; Wong, David W S

    2016-06-01

    Area-based measures of neighborhood characteristics simply derived from enumeration units (e.g., census tracts or block groups) ignore the potential of spatial spillover effects, and thus incorporating such measures into multilevel regression models may underestimate the neighborhood effects on health. To overcome this limitation, we describe the concept and method of areal median filtering to spatialize area-based measures of neighborhood characteristics for multilevel regression analyses. The areal median filtering approach provides a means to specify or formulate "neighborhoods" as meaningful geographic entities by removing enumeration unit boundaries as the absolute barriers and by pooling information from the neighboring enumeration units. This spatializing process takes into account for the potential of spatial spillover effects and also converts aspatial measures of neighborhood characteristics into spatial measures. From a conceptual and methodological standpoint, incorporating the derived spatial measures into multilevel regression analyses allows us to more accurately examine the relationships between neighborhood characteristics and health. To promote and set the stage for informative research in the future, we provide a few important conceptual and methodological remarks, and discuss possible applications, inherent limitations, and practical solutions for using the areal median filtering approach in the study of neighborhood effects on health.

  12. Analyses and Simulation of V-I Characteristics for Solar Cells Based on P-N Junction

    Institute of Scientific and Technical Information of China (English)

    ZHENG Jian-bang; REN Ju; GUO Wen-ge; HOU Chao-qi

    2005-01-01

    Through theoretical analyses of the Shockley equation and the difference between a practical P-N junction and its ideal model, the mathematical models of P-N junction and solar cells had been obtained. With Matlab software, the V-I characteristics of diodes and solar cells were simulated, and a computer simulation model of the solar cells based on P-N junction was also established. Based on the simulation model, the influences of solar cell's internal resistances on open-circuit voltage and short-circuit current under certain illumination were numerically analyzed and solved. The simulation results showed that the equivalent series resistance and shunt resistance could strongly affect the V-I characteristics of solar cell, but their influence styles were different.

  13. A systematic literature review on reviews and meta-analyses of biologically based CAM-practices for cancer patients

    DEFF Research Database (Denmark)

    Paludan-Müller, Christine; Lunde, Anita; Johannessen, Helle

    2010-01-01

    for the improvement of quality of life. Breast cancer was the most common single type of cancer reviewed (8 reviews), all focused on the relief of side effects, primarily by supplements containing soy/plant hormones. The use of these supplements should be discouraged due to a risk for progression of breast cancer......Purpose To provide an overview and evaluate the evidence of biologically based CAM-practices for cancer patients. Methods Pubmed, Social Science Citation Index, AMED and the Cochrane library were systematically searched for reviews on effects of biologically based CAM-practices, including herbal...... remedies, vitamins and other dietary supplements, for cancer or cancer related symptoms published 2000-2008. All studies were assessed according to the SIGN hierarchy of evidence. Results A total of 78 reviews/meta-analyses were identified. Of these, 32 were evaluated as high-quality, whereas 46 had low...

  14. Precursor analyses - The use of deterministic and PSA based methods in the event investigation process at nuclear power plants

    International Nuclear Information System (INIS)

    The efficient feedback of operating experience (OE) is a valuable source of information for improving the safety and reliability of nuclear power plants (NPPs). It is therefore essential to collect information on abnormal events from both internal and external sources. Internal operating experience is analysed to obtain a complete understanding of an event and of its safety implications. Corrective or improvement measures may then be developed, prioritized and implemented in the plant if considered appropriate. Information from external events may also be analysed in order to learn lessons from others' experience and prevent similar occurrences at our own plant. The traditional ways of investigating operational events have been predominantly qualitative. In recent years, a PSA-based method called probabilistic precursor event analysis has been developed, used and applied on a significant scale in many places for a number of plants. The method enables a quantitative estimation of the safety significance of operational events to be incorporated. The purpose of this report is to outline a synergistic process that makes more effective use of operating experience event information by combining the insights and knowledge gained from both approaches, traditional deterministic event investigation and PSA-based event analysis. The PSA-based view on operational events and PSA-based event analysis can support the process of operational event analysis at the following stages of the operational event investigation: (1) Initial screening stage. (It introduces an element of quantitative analysis into the selection process. Quantitative analysis of the safety significance of nuclear plant events can be a very useful measure when it comes to selecting internal and external operating experience information for its relevance.) (2) In-depth analysis. (PSA based event evaluation provides a quantitative measure for judging the significance of operational events, contributors to

  15. FastGroupII: A web-based bioinformatics platform for analyses of large 16S rDNA libraries

    Directory of Open Access Journals (Sweden)

    McNairnie Pat

    2006-02-01

    Full Text Available Abstract Background High-throughput sequencing makes it possible to rapidly obtain thousands of 16S rDNA sequences from environmental samples. Bioinformatic tools for the analyses of large 16S rDNA sequence databases are needed to comprehensively describe and compare these datasets. Results FastGroupII is a web-based bioinformatics platform to dereplicate large 16S rDNA libraries. FastGroupII provides users with the option of four different dereplication methods, performs rarefaction analysis, and automatically calculates the Shannon-Wiener Index and Chao1. FastGroupII was tested on a set of 16S rDNA sequences from coral-associated Bacteria. The different grouping algorithms produced similar, but not identical, results. This suggests that 16S rDNA datasets need to be analyzed in multiple ways when being used for community ecology studies. Conclusion FastGroupII is an effective bioinformatics tool for the trimming and dereplication of 16S rDNA sequences. Several standard diversity indices are calculated, and the raw sequences are prepared for downstream analyses.

  16. Reduction and technical simplification of testing protocol for walking based on repeatability analyses: An Interreg IVa pilot study

    Directory of Open Access Journals (Sweden)

    Nejc Sarabon

    2010-12-01

    Full Text Available The aim of this study was to define the most appropriate gait measurement protocols to be used in our future studies in the Mobility in Ageing project. A group of young healthy volunteers took part in the study. Each subject carried out a 10-metre walking test at five different speeds (preferred, very slow, very fast, slow, and fast. Each walking speed was repeated three times, making a total of 15 trials which were carried out in a random order. Each trial was simultaneously analysed by three observers using three different technical approaches: a stop watch, photo cells and electronic kinematic dress. In analysing the repeatability of the trials, the results showed that of the five self-selected walking speeds, three of them (preferred, very fast, and very slow had a significantly higher repeatability of the average walking velocity, step length and cadence than the other two speeds. Additionally, the data showed that one of the three technical methods for gait assessment has better metric characteristics than the other two. In conclusion, based on repeatability, technical and organizational simplification, this study helped us to successfully define a simple and reliable walking test to be used in the main study of the project.

  17. Detection of intestinal parasites by use of the cuvette-based automated microscopy analyser sediMAX(®).

    Science.gov (United States)

    Intra, J; Taverna, E; Sala, M R; Falbo, R; Cappellini, F; Brambilla, P

    2016-03-01

    Microscopy is the reference method for intestinal parasite identification. The cuvette-based automated microscopy analyser, sediMAX 1, provides 15 digital images of each sediment sample. In this study, we have evaluated this fully automated instrument for detection of enteric parasites, helminths and protozoa. A total of 700 consecutively preserved samples consisting of 60 positive samples (50 protozoa, ten helminths) and 640 negative samples were analysed. Operators were blinded to each others' results. Samples were randomized and were tested both by manual microscopy and sediMAX 1 for parasite recognition. The sediMAX 1 analysis was conducted using a dilution of faecal samples, allowing determination of morphology. The data obtained using sediMAX 1 showed a specificity of 100% and a sensitivity of 100%. Some species of helminths, such as Enterobius vermicularis, Strongyloides stercolaris, the Ancylostoma duodenale/Necator americanus complex, and schistosomes were not considered in this work, because they are rare in stool specimens, are not easily detectable with microscopy analysis, and require specific recovery techniques. This study demonstrated for the first time that sediMAX 1 can be an aid in enteric parasite identification. PMID:26679923

  18. An Evaluation Quality Framework for Analysing School-Based Learning (SBL) to Work-Based Learning (WBL) Transition Module

    Science.gov (United States)

    Alseddiqi, M.; Mishra, R.; Pislaru, C.

    2012-05-01

    The paper presents the results from a quality framework to measure the effectiveness of a new engineering course entitled 'school-based learning (SBL) to work-based learning (WBL) transition module' in the Technical and Vocational Education (TVE) system in Bahrain. The framework is an extended version of existing information quality frameworks with respect to pedagogical and technological contexts. It incorporates specific pedagogical and technological dimensions as per the Bahrain modern industry requirements. Users' views questionnaire on the effectiveness of the new transition module was distributed to various stakeholders including TVE teachers and students. The aim was to receive critical information in diagnosing, monitoring and evaluating different views and perceptions about the effectiveness of the new module. The analysis categorised the quality dimensions by their relative importance. This was carried out using the principal component analysis available in SPSS. The analysis clearly identified the most important quality dimensions integrated in the new module for SBL-to-WBL transition. It was also apparent that the new module contains workplace proficiencies, prepares TVE students for work placement, provides effective teaching and learning methodologies, integrates innovative technology in the process of learning, meets modern industrial needs, and presents a cooperative learning environment for TVE students. From the principal component analysis finding, to calculate the percentage of relative importance of each factor and its quality dimensions, was significant. The percentage comparison would justify the most important factor as well as the most important quality dimensions. Also, the new, re-arranged quality dimensions from the finding with an extended number of factors tended to improve the extended version of the quality information framework to a revised quality framework.

  19. An Evaluation Quality Framework for Analysing School-Based Learning (SBL) to Work-Based Learning (WBL) Transition Module

    International Nuclear Information System (INIS)

    The paper presents the results from a quality framework to measure the effectiveness of a new engineering course entitled 'school-based learning (SBL) to work-based learning (WBL) transition module' in the Technical and Vocational Education (TVE) system in Bahrain. The framework is an extended version of existing information quality frameworks with respect to pedagogical and technological contexts. It incorporates specific pedagogical and technological dimensions as per the Bahrain modern industry requirements. Users' views questionnaire on the effectiveness of the new transition module was distributed to various stakeholders including TVE teachers and students. The aim was to receive critical information in diagnosing, monitoring and evaluating different views and perceptions about the effectiveness of the new module. The analysis categorised the quality dimensions by their relative importance. This was carried out using the principal component analysis available in SPSS. The analysis clearly identified the most important quality dimensions integrated in the new module for SBL-to-WBL transition. It was also apparent that the new module contains workplace proficiencies, prepares TVE students for work placement, provides effective teaching and learning methodologies, integrates innovative technology in the process of learning, meets modern industrial needs, and presents a cooperative learning environment for TVE students. From the principal component analysis finding, to calculate the percentage of relative importance of each factor and its quality dimensions, was significant. The percentage comparison would justify the most important factor as well as the most important quality dimensions. Also, the new, re-arranged quality dimensions from the finding with an extended number of factors tended to improve the extended version of the quality information framework to a revised quality framework.

  20. Geographical origin of cereal grains based on element analyser-stable isotope ratio mass spectrometry (EA-SIRMS).

    Science.gov (United States)

    Wu, Yuluan; Luo, Donghui; Dong, Hao; Wan, Juan; Luo, Haiying; Xian, Yanping; Guo, Xindong; Qin, Fangfang; Han, Wanqing; Wang, Li; Wang, Bin

    2015-05-01

    The stable carbon and nitrogen isotopic compositions (δ(13)C and δ(13)N) of different cereal grains from different regions were determined, using element analyser-stable isotope ratio mass spectrometry (EA-SIRMS) as the key method. Systematically, δ(13)C and δ(13)N of 5 kinds of cereal grains of different origins, 30 wheat samples from different cultivation areas and 160 rice samples of different cultivars from Guangdong province of China were examined. The results indicated that the δ(13)C values of rice, soybean, millet, wheat and corn were significantly (P 0.05), which indicated that the cultivar of cereal grains was not significant based on δ(13)C value. Thus, the comparison of δ(13)C would be potentially useful for rapid and routine discrimination of geographical origin of cereal grains. PMID:25529718

  1. Soil heavy metal contamination related to roasted stone coal slag: a study based on geostatistical and multivariate analyses.

    Science.gov (United States)

    Li, De'an; Jiang, Jianguo; Li, Tianran; Wang, Jiaming

    2016-07-01

    Soil was examined for vanadium (V) and related metal contamination near a stone coal mine in Hubei Province, China. In total, 92 surface and vertical (0-200 cm) soil samples were collected from the site. A handheld X-ray fluorescence spectrometer was used for in situ analysis of the soil concentrations of heavy metals, including V, chromium (Cr), copper (Cu), manganese (Mn), zinc (Zn), and lead (Pb). The mean concentrations of these metals were 931, 721, 279, 223, 163, and 11 mg/kg, respectively. Based on the Chinese Environmental Quality Standard for Soils guidelines, up to 88.0, 76.1, and 56.5 % of the soil samples had single factor pollution indices >3 for V, Cr, and Cu, respectively. Furthermore, 2.2 % of samples were slightly polluted with Zn, while there was no Mn or Pb contamination. GaussAmp curve fitting was performed based on the sample frequency distribution of the Nemerow pollution index. The fitted mean was 5.99, indicating severe pollution. The heavy metals were clustered into two groups, V/Cr/Cu/Zn and Mn/Pb, based on the spatial distributions, the Pearson correlation and principal component analyses. The positive correlations within the V/Cr/Cu/Zn group suggested that they originated from roasted stone coal slag. Finally, the negative correlation between the two groups was attributed to mechanical mixing of the slag and original soil. PMID:27068897

  2. Analyses of the soil surface dynamic of South African Kalahari salt pans based on hyperspectral and multitemporal data

    Science.gov (United States)

    Milewski, Robert; Chabrillat, Sabine; Behling, Robert; Mielke, Christian; Schleicher, Anja Maria; Guanter, Luis

    2016-04-01

    The consequences of climate change represent a major threat to sustainable development and growth in Southern Africa. Understanding the impact on the geo- and biosphere is therefore of great importance in this particular region. In this context the Kalahari salt pans (also known as playas or sabkhas) and their peripheral saline and alkaline habitats are an ecosystem of major interest. They are very sensitive to environmental conditions, and as thus hydrological, mineralogical and ecological responses to climatic variations can be analysed. Up to now the soil composition of salt pans in this area have been only assessed mono-temporally and on a coarse regional scale. Furthermore, the dynamic of the salt pans, especially the formation of evaporites, is still uncertain and poorly understood. High spectral resolution remote sensing can estimate evaporite content and mineralogy of soils based on the analyses of the surface reflectance properties within the Visible-Near InfraRed (VNIR 400-1000 nm) and Short-Wave InfraRed (SWIR 1000-2500 nm) regions. In these wavelength regions major chemical components of the soil interact with the electromagnetic radiation and produce characteristic absorption features that can be used to derive the properties of interest. Although such techniques are well established for the laboratory and field scale, the potential of current (Hyperion) and upcoming spaceborne sensors such as EnMAP for quantitative mineralogical and salt spectral mapping is still to be demonstrated. Combined with hyperspectral methods, multitemporal remote sensing techniques allow us to derive the recent dynamic of these salt pans and link the mineralogical analysis of the pan surface to major physical processes in these dryland environments. In this study we focus on the analyses of the Namibian Omongwa salt pans based on satellite hyperspectral imagery and multispectral time-series data. First, a change detection analysis is applied using the Iterative

  3. The neuronal correlates of digits backward are revealed by voxel-based morphometry and resting-state functional connectivity analyses.

    Directory of Open Access Journals (Sweden)

    Rui Li

    Full Text Available Digits backward (DB is a widely used neuropsychological measure that is believed to be a simple and effective index of the capacity of the verbal working memory. However, its neural correlates remain elusive. The aim of this study is to investigate the neural correlates of DB in 299 healthy young adults by combining voxel-based morphometry (VBM and resting-state functional connectivity (rsFC analyses. The VBM analysis showed positive correlations between the DB scores and the gray matter volumes in the right anterior superior temporal gyrus (STG, the right posterior STG, the left inferior frontal gyrus and the left Rolandic operculum, which are four critical areas in the auditory phonological loop of the verbal working memory. Voxel-based correlation analysis was then performed between the positive rsFCs of these four clusters and the DB scores. We found that the DB scores were positively correlated with the rsFCs within the salience network (SN, that is, between the right anterior STG, the dorsal anterior cingulate cortex and the right fronto-insular cortex. We also found that the DB scores were negatively correlated with the rsFC within an anti-correlation network of the SN, between the right posterior STG and the left posterior insula. Our findings suggest that DB performance is related to the structural and functional organizations of the brain areas that are involved in the auditory phonological loop and the SN.

  4. Simulation of the Impact of New Air-Based Ocean Surface Wind Measurements on H*Wind Analyses

    Science.gov (United States)

    Miller, Timothy; Atlas, Robert; Black, Peter; Case, Jonathan; Chen, Shuyi; Hood, Robbie; Jones, Linwood; Ruff, Chris; Uhlhorn, Eric

    2008-01-01

    The H'Wind analysis, a product of the Hurricane Research Division of NOAA's Atlantic Oceanographic and Meteorological Laboratory, brings together wind measurements from a variety of observation platforms into an objective analysis of the distribution of wind speeds in a tropical cyclone. This product is designed to improve understanding of the extent and strength of the wind field, and to improve the assessment of hurricane intensity. See http://www.aoml.noaa.gov/hrd/data sub/wind.html. The Hurricane Imaging Radiometer (HIRad) is a new airborne microwave remote sensor for hurricane observations that is currently under development by NASA Marshall Space Flight Center, NOAA Hurricane Research Division, the University of Central Florida and the University of Michigan. HIRad is being designed to enhance the real-time airborne ocean surface winds observation capabilities of NOAA and USAF Weather Squadron hurricane hunter aircraft using the operational airborne Stepped Frequency Microwave Radiometer (SFMR). Unlike SFMR, which measures wind speed and rain rate along the ground track directly beneath the aircraft, HIRad will provide images of the surface wind and rain field over a wide swath (approx. 3 x the aircraft altitude). The instrument is described in a paper presented to the Hurricanes and Tropical Meteorology Symposium. The present paper describes a set of Observing System Simulation Experiments (OSSEs) in which measurements from the new instrument as well as those from existing instruments (air, surface, and space-based) are simulated from the output of a numerical model from the University of Miami and those results are used to construct H*Wind analyses. Evaluations will be presented on the impact of the HIRad instrument on H'Wind analyses, both in terms of adding it to the full suite of current measurements, as well as using it to replace instrument(s) that may not be functioning at the future tame the HIRad instrument is implemented.

  5. Using uncertainty and sensitivity analyses in socioecological agent-based models to improve their analytical performance and policy relevance.

    Directory of Open Access Journals (Sweden)

    Arika Ligmann-Zielinska

    Full Text Available Agent-based models (ABMs have been widely used to study socioecological systems. They are useful for studying such systems because of their ability to incorporate micro-level behaviors among interacting agents, and to understand emergent phenomena due to these interactions. However, ABMs are inherently stochastic and require proper handling of uncertainty. We propose a simulation framework based on quantitative uncertainty and sensitivity analyses to build parsimonious ABMs that serve two purposes: exploration of the outcome space to simulate low-probability but high-consequence events that may have significant policy implications, and explanation of model behavior to describe the system with higher accuracy. The proposed framework is applied to the problem of modeling farmland conservation resulting in land use change. We employ output variance decomposition based on quasi-random sampling of the input space and perform three computational experiments. First, we perform uncertainty analysis to improve model legitimacy, where the distribution of results informs us about the expected value that can be validated against independent data, and provides information on the variance around this mean as well as the extreme results. In our last two computational experiments, we employ sensitivity analysis to produce two simpler versions of the ABM. First, input space is reduced only to inputs that produced the variance of the initial ABM, resulting in a model with output distribution similar to the initial model. Second, we refine the value of the most influential input, producing a model that maintains the mean of the output of initial ABM but with less spread. These simplifications can be used to 1 efficiently explore model outcomes, including outliers that may be important considerations in the design of robust policies, and 2 conduct explanatory analysis that exposes the smallest number of inputs influencing the steady state of the modeled system.

  6. Systematic Reviews and Meta-Analyses - Literature-based Recommendations for Evaluating Strengths, Weaknesses, and Clinical Value.

    Science.gov (United States)

    Beitz, Janice M; Bolton, Laura L

    2015-11-01

    Good quality systematic reviews (SRs) summarizing best available evidence can help inform clinical decisions, improv- ing patient and wound outcomes. Weak SRs can misinform readers, undermining care decisions and evidence-based practice. To examine the strengths and weaknesses of SRs and meta-analyses and the role of SRs in contemporary evidence-based wound care practice, and using the search terms systematic review, meta-analysis, and evidence-based practice, the authors searched Medline and the Cumulative Index to Nursing and Allied Health Literature (CINAHL) for important terminology and recommendations to help clinicians evaluate SRs with meta-analysis. Reputable websites, recent textbooks, and synthesized available literature also were reviewed to describe and summarize SR strengths and weaknesses. After developing a checklist for critically evaluating SR objectives, inclusion/exclusion criteria, study quality, data extraction and synthesis methods, meta-analysis homogeneity, accuracy of results, interpretation, and consistency between significant findings and abstract or conclusions, the checklist was applied to topical wound care SRs identified in Cochrane and MEDLINE searches. Best available evidence included in the SRs from 169 randomized controlled trials on 11,571 patients supporting topical intervention healing effects on burns, surgical sites, and diabetic, venous, or pressure ulcers was summarized and showed SRs and clinical trials can demonstrate different outcomes because the information/data are compiled differently. The results illustrate how evidence insufficient to support firm conclusions may still meet immediate needs to guide carefully considered clinical wound and patient care decisions while encouraging better future science. PMID:26544016

  7. Voxel-based analyses of gray/white matter volume and diffusion tensor data in major depression. Presidential award proceedings

    International Nuclear Information System (INIS)

    Previous neuroimaging studies have revealed that frontolimbic dysfunction may contribute to the pathophysiology of major depressive disorder. We used voxel-based analysis to simultaneously elucidate regional changes in gray/white matter volume, mean diffusivity (MD), and fractional anisotropy (FA) in the central nervous system of patients with unipolar major depression. We studied 21 right-handed patients and 42 age- and gender-matched right-handed normal subjects without central nervous system disorders. All image processing and statistical analyses were performed using SPM5 software. Local areas showing significant gray matter volume reduction in depressive patients compared with normal controls were observed in the right parahippocampal gyrus, hippocampus, bilateral middle frontal gyri, bilateral anterior cingulate cortices, left parietal and occipital lobes, and right superior temporal gyrus. Local areas showing increased mean diffusivity in depressive patients were observed in the bilateral parahippocampal gyri, hippocampus, pons, cerebellum, left frontal and temporal lobes, and right frontal lobe. There was no significant difference between the 2 groups for fractional anisotropy and white matter volume in the entire brain. Although there was no local area in which FA and MD were significantly correlated with disease severity, FA tended to correlate negatively with depression days (total accumulated days in depressive state) in the right anterior cingulate and the left frontal white matter (FDR-corrected P=0.055 for both areas). These results suggest that the frontolimbic neural circuit may play an important role in the neuropathology of patients with major depression. (author)

  8. Optimisation of recovery protocols for double-base smokeless powder residues analysed by total vaporisation (TV) SPME/GC-MS.

    Science.gov (United States)

    Sauzier, Georgina; Bors, Dana; Ash, Jordan; Goodpaster, John V; Lewis, Simon W

    2016-09-01

    The investigation of explosive events requires appropriate evidential protocols to recover and preserve residues from the scene. In this study, a central composite design was used to determine statistically validated optimum recovery parameters for double-base smokeless powder residues on steel, analysed using total vaporisation (TV) SPME/GC-MS. It was found that maximum recovery was obtained using isopropanol-wetted swabs stored under refrigerated conditions, then extracted for 15min into acetone on the same day as sample collection. These parameters were applied to the recovery of post-blast residues deposited on steel witness surfaces following a PVC pipe bomb detonation, resulting in detection of all target components across the majority of samples. Higher overall recoveries were obtained from plates facing the sides of the device, consistent with the point of first failure occurring in the pipe body as observed in previous studies. The methodology employed here may be readily applied to a variety of other explosive compounds, and thus assist in establishing 'best practice' procedures for explosive investigations. PMID:27343617

  9. High temperature gas-cooled pebble bed reactor steady state thermal-hydraulics analyses based on CFD method

    International Nuclear Information System (INIS)

    Background: Based on general purpose CFD code Fluent, the PBMR-400 full load nominal condition thermal-hydraulics performance was studied by applying local thermal non-equilibrium porous media model. Purpose: In thermal hydraulics study of the gas cooled pebble bed reactor, the core of the reactor can be treated as macroscopic porous media with strong inner heat source, and the original Fluent code can not handle it properly. Methods: By introducing a UDS in the calculation domain of the reactor core and subjoining a new resistance term, we develop a non-equilibrium porous media model which can give an accurate description of the core of the pebble bed. The mesh of CFD code is finer than that of the traditional pebble bed reactor thermal hydraulics analysis code such as THERMIX and TINTE, thus more information about coolant velocity fields, temperature field and solid phase temperature field can be acquired. Results: The nominal condition calculation results of the CFD code are compared to those of the well-established thermal-hydraulic code THERMIX and TINTE, and show a good consistency. Conclusion: The extended local thermal non-equilibrium model can be used to analyse thermal-hydraulics of high temperature pebble bed type reactor. (authors)

  10. What Happened, and Why: Toward an Understanding of Human Error Based on Automated Analyses of Incident Reports. Volume 1

    Science.gov (United States)

    Maille, Nicolas P.; Statler, Irving C.; Ferryman, Thomas A.; Rosenthal, Loren; Shafto, Michael G.; Statler, Irving C.

    2006-01-01

    The objective of the Aviation System Monitoring and Modeling (ASMM) project of NASA s Aviation Safety and Security Program was to develop technologies that will enable proactive management of safety risk, which entails identifying the precursor events and conditions that foreshadow most accidents. This presents a particular challenge in the aviation system where people are key components and human error is frequently cited as a major contributing factor or cause of incidents and accidents. In the aviation "world", information about what happened can be extracted from quantitative data sources, but the experiential account of the incident reporter is the best available source of information about why an incident happened. This report describes a conceptual model and an approach to automated analyses of textual data sources for the subjective perspective of the reporter of the incident to aid in understanding why an incident occurred. It explores a first-generation process for routinely searching large databases of textual reports of aviation incident or accidents, and reliably analyzing them for causal factors of human behavior (the why of an incident). We have defined a generic structure of information that is postulated to be a sound basis for defining similarities between aviation incidents. Based on this structure, we have introduced the simplifying structure, which we call the Scenario as a pragmatic guide for identifying similarities of what happened based on the objective parameters that define the Context and the Outcome of a Scenario. We believe that it will be possible to design an automated analysis process guided by the structure of the Scenario that will aid aviation-safety experts to understand the systemic issues that are conducive to human error.

  11. Advances in global sensitivity analyses of demographic-based species distribution models to address uncertainties in dynamic landscapes.

    Science.gov (United States)

    Naujokaitis-Lewis, Ilona; Curtis, Janelle M R

    2016-01-01

    Developing a rigorous understanding of multiple global threats to species persistence requires the use of integrated modeling methods that capture processes which influence species distributions. Species distribution models (SDMs) coupled with population dynamics models can incorporate relationships between changing environments and demographics and are increasingly used to quantify relative extinction risks associated with climate and land-use changes. Despite their appeal, uncertainties associated with complex models can undermine their usefulness for advancing predictive ecology and informing conservation management decisions. We developed a computationally-efficient and freely available tool (GRIP 2.0) that implements and automates a global sensitivity analysis of coupled SDM-population dynamics models for comparing the relative influence of demographic parameters and habitat attributes on predicted extinction risk. Advances over previous global sensitivity analyses include the ability to vary habitat suitability across gradients, as well as habitat amount and configuration of spatially-explicit suitability maps of real and simulated landscapes. Using GRIP 2.0, we carried out a multi-model global sensitivity analysis of a coupled SDM-population dynamics model of whitebark pine (Pinus albicaulis) in Mount Rainier National Park as a case study and quantified the relative influence of input parameters and their interactions on model predictions. Our results differed from the one-at-time analyses used in the original study, and we found that the most influential parameters included the total amount of suitable habitat within the landscape, survival rates, and effects of a prevalent disease, white pine blister rust. Strong interactions between habitat amount and survival rates of older trees suggests the importance of habitat in mediating the negative influences of white pine blister rust. Our results underscore the importance of considering habitat attributes along

  12. Insights into the phylogeny of sporadotrichid ciliates (Protozoa, Ciliophora: Hypotricha) based on genealogical analyses of multiple molecular markers

    Institute of Scientific and Technical Information of China (English)

    HU Xiaoyan; HU Xiaozhong; Khaled A. S. AL-RASHEID; Saieh A. AL-FARRAJ; SONG Weibo

    2011-01-01

    The sporadotrichid ciliates are an especially diverse group. A number of investigators have studied the morphological, morphogenetic, and molecular relationships among members of this group. Despite this, a consistent classification is still lacking and several important questions about the phylogenetic relationships within this group remain unsolved. To improve our understanding of these relationships, we constructed phylogenetic trees using the nucleotide sequences of the small-subunit rRNA (SSrRNA) gene and amino acid sequences of actin I and -αtubulin. Analyses of SSrRNA gene sequences indicated that: 1) the Sporadotrichida sensu Lynn (2008) and the Oxytrichidae are polyphyletic; 2) the Uroleptus species, which are classified to urostylids, formed a sister group with the oxytrichids; 3) Halteria grandinella, which is grouped morphologically with oligotrich species, clustered within the oxytrichids. These results are congruent with previous studies based on SSrRNA gene sequences. However, the amino acid sequences of actin I and α-tubulin yielded different topologies. The main results are: 1) in all phylogenetic trees, the genus Oxylricha was paraphyletic; 2) Uroleptus was sister to a subset of Urostyla and Holosticha, albeit with low supporting values; 3) Halteria grandinella was separated distantly from the Oxytrichidae in trees inferred from actin I amino acid sequences but clustered with oligotrichids in the α-tubulin analysis. The inconsistency among the trees inferred from these different molecular markers may be caused by rapidly accumulated genetic characterizations of ciliates. Further studies with additional molecular markers and sampling of more taxa are expected to better address the relationships among sporadotrichids.

  13. Insights into the phylogeny of sporadotrichid ciliates (Protozoa, Ciliophora: Hypotricha) based on genealogical analyses of multiple molecular markers

    Science.gov (United States)

    Hu, Xiaoyan; Hu, Xiaozhong; Al-Rasheid, Khaled A. S.; Al-Farraj, Saleh A.; Song, Weibo

    2011-01-01

    The sporadotrichid ciliates are an especially diverse group. A number of investigators have studied the morphological, morphogenetic, and molecular relationships among members of this group. Despite this, a consistent classification is still lacking and several important questions about the phylogenetic relationships within this group remain unsolved. To improve our understanding of these relationships, we constructed phylogenetic trees using the nucleotide sequences of the small-subunit rRNA (SSrRNA) gene and amino acid sequences of actin I and α-tubulin. Analyses of SSrRNA gene sequences indicated that: 1) the Sporadotrichida sensu Lynn (2008) and the Oxytrichidae are polyphyletic; 2) the Uroleptus species, which are classified to urostylids, formed a sister group with the oxytrichids; 3) Halteria grandinella, which is grouped morphologically with oligotrich species, clustered within the oxytrichids. These results are congruent with previous studies based on SSrRNA gene sequences. However, the amino acid sequences of actin I and α-tubulin yielded different topologies. The main results are: 1) in all phylogenetic trees, the genus Oxytricha was paraphyletic; 2) Uroleptus was sister to a subset of Urostyla and Holosticha, albeit with low supporting values; 3) Halteria grandinella was separated distantly from the Oxytrichidae in trees inferred from actin I amino acid sequences but clustered with oligotrichids in the α-tubulin analysis. The inconsistency among the trees inferred from these different molecular markers may be caused by rapidly accumulated genetic characterizations of ciliates. Further studies with additional molecular markers and sampling of more taxa are expected to better address the relationships among sporadotrichids.

  14. Pseudomonas community structure and antagonistic potential in the rhizosphere: insights gained by combining phylogenetic and functional gene-based analyses.

    Science.gov (United States)

    Costa, Rodrigo; Gomes, Newton C M; Krögerrecklenfort, Ellen; Opelt, Katja; Berg, Gabriele; Smalla, Kornelia

    2007-09-01

    The Pseudomonas community structure and antagonistic potential in the rhizospheres of strawberry and oilseed rape (host plants of the fungal phytopathogen Verticillium dahliae) were assessed. The use of a new PCR-DGGE system, designed to target Pseudomonas-specific gacA gene fragments in environmental DNA, circumvented common biases of 16S rRNA gene-based DGGE analyses and proved to be a reliable tool to unravel the diversity of uncultured Pseudomonas in bulk and rhizosphere soils. Pseudomonas-specific gacA fingerprints of total-community (TC) rhizosphere DNA were surprisingly diverse, plant-specific and differed markedly from those of the corresponding bulk soils. By combining multiple culture-dependent and independent surveys, a group of Pseudomonas isolates antagonistic towards V. dahliae was shown to be genotypically conserved, to carry the phlD biosynthetic locus (involved in the biosynthesis of 2,4-diacetylphloroglucinol - 2,4-DAPG), and to correspond to a dominant and highly frequent Pseudomonas population in the rhizosphere of field-grown strawberries planted at three sites in Germany which have different land use histories. This population belongs to the Pseudomonas fluorescens phylogenetic lineage and showed closest relatedness to P. fluorescens strain F113 (97% gacA gene sequence identity in 492-bp sequences), a biocontrol agent and 2,4-DAPG producer. Partial gacA gene sequences derived from isolates, clones of the strawberry rhizosphere and DGGE bands retrieved in this study represent previously undescribed Pseudomonas gacA gene clusters as revealed by phylogenetic analysis. PMID:17686023

  15. Analysing a reading strategy based on the elaboration of questions and the pair of answers and questions

    OpenAIRE

    Wilmo Ernesto Francisco Junior

    2011-01-01

    This paper describes a reading activity developed with chemistry students. The main aim was to analyse the reflections produced after reading three articles about experimentation. This study was performed with 17 chemistry students from a federal university. The reading strategy involved writing productions. Questions and the pair of questions and answers elaborated from articles were analysed, as well as the contribution of the socialization of knowledge by means of discussions and a debate....

  16. Using meta-analytic path analysis to test theoretical predictions in health behavior: An illustration based on meta-analyses of the theory of planned behavior

    OpenAIRE

    Hagger, Martin; Chan, Dervin K. C.; Protogerou, Cleo; Chatzisarantis, Nikos L. D.

    2016-01-01

    Objective Synthesizing research on social cognitive theories applied to health behavior is an important step in the development of an evidence base of psychological factors as targets for effective behavioral interventions. However, few meta-analyses of research on social cognitive theories in health contexts have conducted simultaneous tests of theoretically-stipulated pattern effects using path analysis. We argue that conducting path analyses of meta-analytic effects among constructs fr...

  17. A comparative evaluation of money-based and energy-based cost-benefit analyses of tertiary municipal wastewater treatment using forested wetlands vs. sand filtration in Louisiana

    Energy Technology Data Exchange (ETDEWEB)

    Ko, Jae-Young; Day, John W.; Lane, Robert R.; Day, Jason N. [Coastal Ecology Institute, School of the Coast and Environment, Louisiana State University, Baton Rouge, LA 70803 (United States)

    2004-07-01

    Forested wetlands have been used to provide advanced secondary and tertiary treatment for municipal wastewater for a number of cities in southern Louisiana. Wetland assimilation provides the same services as conventional methods in improving wastewater quality, while having positive impacts on wetlands. Suspended solids and nutrients in wastewater increase net primary productivity (NPP), which leads to increased organic soil formation. This leads to increased elevation that offsets subsidence, a major cause of coastal wetland loss in Louisiana. The City of Breaux Bridge, LA, has discharged secondarily treated municipal wastewater into a forested wetland since 1950, and wetland assimilation was permitted by the Louisiana Department of Environmental Quality and the US Environmental Protection Agency (US EPA) in 1997. We compared benefits and costs of utilizing forested wetlands and conventional sand treatment using money-based and energy-based cost-benefit analyses (CBA). The wetland method had a higher benefit-cost ratio than conventional treatment by 6.0 times based on dollar-based CBA, and by 21.7 times from the energy analysis. Methodologically, dollar-based CBA is a market price-based assessment, liming to an anthropocentric framework, while embodied energy analysis accounts for monetary and nonmonetary values such as carbon sequestration by wetlands, which contributes a more complete assessment of the interaction between the natural environment and the human economy. Wetlands treat more wastewater per unit of energy and with less financial cost than conventional methods, because the wetland method utilizes natural energies such as sunlight, wind and rain, while conventional treatment methods depend on imported nonrenewable energies and materials such as chemicals and electricity and require additional capital investment. Increasing application of natural energies is becoming more important with depleting fossil fuels. Further, wastewater addition increases NPP

  18. Simulation of the Impact of New Aircraft and Satellite-Based Ocean Surface Wind Measurements on H*Wind Analyses

    Science.gov (United States)

    Miller, TImothy L.; Atlas, R. M.; Black, P. G.; Case, J. L.; Chen, S. S.; Hood, R. E.; Johnson, J. W.; Jones, L.; Ruf, C. S.; Uhlborn, E. W.

    2008-01-01

    Accurate observations of surface ocean vector winds (OVW) with high spatial and temporal resolution are required for understanding and predicting tropical cyclones. As NASA's QuikSCAT and Navy's WindSat operate beyond their design life, many members of the weather and climate science communities recognize the importance of developing new observational technologies and strategies to meet the essential need for OVW information to improve hurricane intensity and location forecasts. The Hurricane Imaging Radiometer (HIRAD) is an innovative technology development which offers new and unique remotely sensed satellite observations of both extreme oceanic wind events and strong precipitation. It is based on the airborne Stepped Frequency Microwave Radiometer (SFMR), which is the only proven remote sensing technique for observing tropical cyclone (TC) ocean surface wind speeds and rain rates. The proposed HIRAD instrument advances beyond the current nadir viewing SFMR to an equivalent wide-swath SFMR imager using passive microwave synthetic thinned aperture radiometer (STAR) technology. This sensor will operate over 4-7 GHz (C-band frequencies) where the required TC remote sensing physics has been validated by both SFMR and WindSat radiometers. The instrument is described in more detail in a paper by Jones et al. presented to the Tropical Meteorology Special Symposium at this AMS Annual Meeting. Simulated HIRAD passes through a simulation of hurricane Frances are being developed to demonstrate HIRAD estimation of surface wind speed over a wide swath in the presence of heavy rain. These are currently being used in "quick" OSSEs (Observing System Simulation Experiments) with H'Wind analyses as the discriminating tool. The H'Wind analysis, a product of the Hurricane Research Division of NOAA's Atlantic , Oceanographic and Meteorological Laboratory, brings together wind measurements from a variety of observation platforms into an objective analysis of the distribution of wind

  19. Mid-Holocene decline in African buffalos inferred from Bayesian coalescence-based analyses of microsatellites and mitochondrial DNA

    DEFF Research Database (Denmark)

    Heller, Rasmus; Lorenzen, Eline D.; Okello, J.B.A;

    2008-01-01

    pandemic in the late 1800s, but little is known about the earlier demographic history of the species. We analysed genetic variation at 17 microsatellite loci and a 302-bp fragment of the mitochondrial DNA control region to infer past demographic changes in buffalo populations from East Africa. Two Bayesian...

  20. Late Quaternary climate and environmental changes in a permafrost section near Igarka, Northern Siberia based on leaf wax analyses

    Science.gov (United States)

    Schaefer, Imke; Schweri, Lea; Zech, Jana; Tananaev, Nikita; Zech, Roland

    2016-04-01

    Leaf wax biomarkers, such as long chain n-alkanes and n-alkanoic acids, and their carbon isotopic composition are a promising tool for reconstructing past climate and environmental changes and gain more and more attention in paleoresearch. Here we present the results of leaf wax analyses from a permafrost outcrop at the left banks of the Yenisei River near the city of Igarka, Northern Russia. Fluvio-glacial sediments are exposed in the lower part of the outcrop and probably date back to ~60 ka. The upper part consist of aeolian sediments deposited since, overprinted by various pedogenetic processes. First results indicate a continuous contribution of deciduous trees to the vegetation during the last glacial. Compound specific deuterium and radiocarbon analyses are in progress in order to investigate changes in paleoclimate and to establish a robust chronology.

  1. Genetic variation in Opisthorchis viverrini (Trematoda: Opisthorchiidae) from northeast Thailand and Laos PDR based on random amplified polymorphic DNA analyses

    OpenAIRE

    Sithithaworn, Paiboon; Nuchjungreed, Chadaporn; Srisawangwong, Tuanchai; Ando, Katsuhiko; Petney, Trevor N.; Neil B. Chilton; Andrews, Ross H.

    2006-01-01

    Genetic variation in Opisthorchis viverrini adults originating from different locations in northeast Thailand and Laos, People’s Democratic Republic (PDR), was examined using random amplified polymorphic DNA (RAPD) analyses. In an initial analysis, the genomic DNA of one fluke from each of ten localities was amplified using 15 random primers (10-mers); however, genetic variation among O. viverrini specimens was detected reliably for only four primers. A more detailed RAPD analysis using these...

  2. Parsimony and model-based analyses of indels in avian nuclear genes reveal congruent and incongruent phylogenetic signals.

    Science.gov (United States)

    Yuri, Tamaki; Kimball, Rebecca T; Harshman, John; Bowie, Rauri C K; Braun, Michael J; Chojnowski, Jena L; Han, Kin-Lan; Hackett, Shannon J; Huddleston, Christopher J; Moore, William S; Reddy, Sushma; Sheldon, Frederick H; Steadman, David W; Witt, Christopher C; Braun, Edward L

    2013-01-01

    Insertion/deletion (indel) mutations, which are represented by gaps in multiple sequence alignments, have been used to examine phylogenetic hypotheses for some time. However, most analyses combine gap data with the nucleotide sequences in which they are embedded, probably because most phylogenetic datasets include few gap characters. Here, we report analyses of 12,030 gap characters from an alignment of avian nuclear genes using maximum parsimony (MP) and a simple maximum likelihood (ML) framework. Both trees were similar, and they exhibited almost all of the strongly supported relationships in the nucleotide tree, although neither gap tree supported many relationships that have proven difficult to recover in previous studies. Moreover, independent lines of evidence typically corroborated the nucleotide topology instead of the gap topology when they disagreed, although the number of conflicting nodes with high bootstrap support was limited. Filtering to remove short indels did not substantially reduce homoplasy or reduce conflict. Combined analyses of nucleotides and gaps resulted in the nucleotide topology, but with increased support, suggesting that gap data may prove most useful when analyzed in combination with nucleotide substitutions. PMID:24832669

  3. Parsimony and Model-Based Analyses of Indels in Avian Nuclear Genes Reveal Congruent and Incongruent Phylogenetic Signals

    Directory of Open Access Journals (Sweden)

    Frederick H. Sheldon

    2013-03-01

    Full Text Available Insertion/deletion (indel mutations, which are represented by gaps in multiple sequence alignments, have been used to examine phylogenetic hypotheses for some time. However, most analyses combine gap data with the nucleotide sequences in which they are embedded, probably because most phylogenetic datasets include few gap characters. Here, we report analyses of 12,030 gap characters from an alignment of avian nuclear genes using maximum parsimony (MP and a simple maximum likelihood (ML framework. Both trees were similar, and they exhibited almost all of the strongly supported relationships in the nucleotide tree, although neither gap tree supported many relationships that have proven difficult to recover in previous studies. Moreover, independent lines of evidence typically corroborated the nucleotide topology instead of the gap topology when they disagreed, although the number of conflicting nodes with high bootstrap support was limited. Filtering to remove short indels did not substantially reduce homoplasy or reduce conflict. Combined analyses of nucleotides and gaps resulted in the nucleotide topology, but with increased support, suggesting that gap data may prove most useful when analyzed in combination with nucleotide substitutions.

  4. Paleoenvironmental reconstruction based on palynofacies analyses of the Cansona Formation (Late Cretaceous), Sinú-San Jacinto Basin, northwest Colombia

    Science.gov (United States)

    Juliao-Lemus, Tatiana; Carvalho, Marcelo de Araujo; Torres, Diego; Plata, Angelo; Parra, Carlos

    2016-08-01

    To reconstruct the paleoenvironments of the Cansona Formation, a Cretaceous succession in Colombia that has controversial paleoenvironmental interpretation, occasionally deep marine and occasionally shallow marine, palynofacies analyses were conducted on 93 samples from four sections of the Sinú San Jacinto Basin in the north, midwest, and southwest sectors. For the palynofacies analyses, the kerogen categories were counted and subjected to cluster analyses. Four palynofacies associations were revealed for the four sections: Palynofacies Association I (PA I), which consisted of microforaminiferal linings, scolecodonts, dinoflagellate cysts, pollen grains, and fungi hyphae; PA II, which consisted of phytoclast translucent non-biostructured and biostructured, opaque phytoclasts (equidimensional and lath shaped); PA III, which consisted of pseudoamorphous particles, cuticles, resin, and fungal spores; and PA IV, which consisted of fluorescent and non-fluorescent amorphous organic matter and the fresh-water algae Botryococcus. In contrast to early studies that suggested a generalization of the depositional environment for the Cansona Formation (deep or shallow conditions), this study suggests that the formation reflects conspicuous stratigraphic and lateral changes and hence different depositional environments. The Cerro Cansona (CC4 section) and Chalán (AP section) areas are a more marine proximal settings (Early Campanian-Maastrichtian), and there is an intermediate setting for the Lorica area (SC section) and deeper conditions for the Montería area (CP2 section).

  5. A robust University-NGO partnership: Analysing school efficiencies in Bolivia with community-based management techniques

    OpenAIRE

    Joao Neiva de Figueiredo; Ann Marie Jursca Keffer; Miguel Angel Marca Barrientos; Silvana Gonzalez

    2013-01-01

    Community-based management research is a collaborative effort between management, academics and communities in need with the specific goal of achieving social change to foster social justice. Because it is designed to promote and validate joint methods of discovery and community-based sources of knowledge, community-based management research has several unique characteristics, which may affect its execution. This article describes the process of a community-based management research project w...

  6. Genetic diversity and population structure of black Dahe pig based on DNA sequences analyses of mitochondrial and nuclear genes.

    Science.gov (United States)

    Tang, Lizhou; Yu, Long; Wang, Junjie; Liu, Chao; Shi, Xiaodong; Ding, Wei; Zhu, Lei; Guo, Songchang

    2016-01-01

    To investigate the genetic diversity and population structure of black Dahe pigs, we collected 175 samples from 5 local populations and sequenced them using a combination of two selected molecular markers for mitochondrial cytochrome b and Major Histocompatibility Complex (MHC) DRB. Overall, the results of AMOVA and phylogenetic tree and gene flow analyses detected high levels of gene flow among the five populations, particularly individual pigs from Dahe town (Pop1) or Yingshang town (Pop2) to other populations (Pop3, Pop4, and Pop5). The genetic diversity analyses showed that the diversity indices of the five populations did not vary significantly, but they were much lower than those of other Chinese pig species. These results suggest that distinct gene flow, unstable population pattern, and lower genetic diversity have been influenced mainly by human introductions for economic ends. These findings provide genetic information that could be used for the preservation and further genetic improvement of the black Dahe pig, as well as an important reference for the evaluation, conservation, and utilization of the genetic resources of this breed.

  7. Long-term fertilization alters chemically-separated soil organic carbon pools: Based on stable C isotope analyses

    Science.gov (United States)

    Dou, Xiaolin; He, Ping; Cheng, Xiaoli; Zhou, Wei

    2016-01-01

    Quantification of dynamics of soil organic carbon (SOC) pools under the influence of long-term fertilization is essential for predicting carbon (C) sequestration. We combined soil chemical fractionation with stable C isotope analyses to investigate the C dynamics of the various SOC pools after 25 years of fertilization. Five types of soil samples (0-20, 20-40 cm) including the initial level (CK) and four fertilization treatments (inorganic nitrogen fertilizer, IN; balanced inorganic fertilizer, NPK; inorganic fertilizer plus farmyard manure, MNPK; inorganic fertilizer plus corn straw residue, SNPK) were separated into recalcitrant and labile fractions, and the fractions were analysed for C content, C:N ratios, δ13C values, soil C and N recalcitrance indexes (RIC and RIN). Chemical fractionation showed long-term MNPK fertilization strongly increased the SOC storage in both soil layers (0-20 cm = 1492.4 gC m2 and 20-40 cm = 1770.6 gC m2) because of enhanced recalcitrant C (RC) and labile C (LC). The 25 years of inorganic fertilizer treatment did not increase the SOC storage mainly because of the offsetting effects of enhanced RC and decreased LC, whereas no clear SOC increases under the SNPK fertilization resulted from the fast decay rates of soil C.

  8. Long-term fertilization alters chemically-separated soil organic carbon pools: Based on stable C isotope analyses.

    Science.gov (United States)

    Dou, Xiaolin; He, Ping; Cheng, Xiaoli; Zhou, Wei

    2016-01-01

    Quantification of dynamics of soil organic carbon (SOC) pools under the influence of long-term fertilization is essential for predicting carbon (C) sequestration. We combined soil chemical fractionation with stable C isotope analyses to investigate the C dynamics of the various SOC pools after 25 years of fertilization. Five types of soil samples (0-20, 20-40 cm) including the initial level (CK) and four fertilization treatments (inorganic nitrogen fertilizer, IN; balanced inorganic fertilizer, NPK; inorganic fertilizer plus farmyard manure, MNPK; inorganic fertilizer plus corn straw residue, SNPK) were separated into recalcitrant and labile fractions, and the fractions were analysed for C content, C:N ratios, δ(13)C values, soil C and N recalcitrance indexes (RIC and RIN). Chemical fractionation showed long-term MNPK fertilization strongly increased the SOC storage in both soil layers (0-20 cm = 1492.4 gC m(2) and 20-40 cm = 1770.6 gC m(2)) because of enhanced recalcitrant C (RC) and labile C (LC). The 25 years of inorganic fertilizer treatment did not increase the SOC storage mainly because of the offsetting effects of enhanced RC and decreased LC, whereas no clear SOC increases under the SNPK fertilization resulted from the fast decay rates of soil C.

  9. Analysing the Correlation between Social Network Analysis Measures and Performance of Students in Social Network-Based Engineering Education

    Science.gov (United States)

    Putnik, Goran; Costa, Eric; Alves, Cátia; Castro, Hélio; Varela, Leonilde; Shah, Vaibhav

    2016-01-01

    Social network-based engineering education (SNEE) is designed and implemented as a model of Education 3.0 paradigm. SNEE represents a new learning methodology, which is based on the concept of social networks and represents an extended model of project-led education. The concept of social networks was applied in the real-life experiment,…

  10. Studies and analyses of the space shuttle main engine. Failure information propagation model data base and software

    Science.gov (United States)

    Tischer, A. E.

    1987-01-01

    The failure information propagation model (FIPM) data base was developed to store and manipulate the large amount of information anticipated for the various Space Shuttle Main Engine (SSME) FIPMs. The organization and structure of the FIPM data base is described, including a summary of the data fields and key attributes associated with each FIPM data file. The menu-driven software developed to facilitate and control the entry, modification, and listing of data base records is also discussed. The transfer of the FIPM data base and software to the NASA Marshall Space Flight Center is described. Complete listings of all of the data base definition commands and software procedures are included in the appendixes.

  11. A robust University-NGO partnership: Analysing school efficiencies in Bolivia with community-based management techniques

    Directory of Open Access Journals (Sweden)

    Joao Neiva de Figueiredo

    2013-09-01

    Full Text Available Community-based management research is a collaborative effort between management, academics and communities in need with the specific goal of achieving social change to foster social justice. Because it is designed to promote and validate joint methods of discovery and community-based sources of knowledge, community-based management research has several unique characteristics, which may affect its execution. This article describes the process of a community-based management research project which is descriptive in nature and uses quantitative techniques to examine school efficiencies in low-income communities in a developing country – Bolivia. The article describes the partnership between a US-based university and a Bolivian not-for-profit organisation, the research context and the history of the research project, including its various phases. It focuses on the (yet unpublished process of the community-based research as opposed to its content (which has been published elsewhere. The article also makes the case that the robust partnership between the US-based university and the Bolivian NGO has been a determining factor in achieving positive results. Strengths and limitations are examined in the hope that the experience may be helpful to others conducting descriptive quantitative management research using community-engaged frameworks in cross-cultural settings. Keywords: international partnership, community-engaged scholarship, education efficiency, multicultural low-income education.

  12. Linking field-based metabolomics and chemical analyses to identify contaminants of emerging concern in the Great Lakes ecosystem

    Science.gov (United States)

    Although research has focused on remediating ecological impacts of environmental contaminants on the Great Lakes and other aquatic ecosystems, there exists a continuing need for additional biologically-based tools for monitoring success. Profiling of endogenous metabolites (i.e....

  13. Präferenzmessung für Automobile mit alternativen Antriebssystemen - Eine Anwendung adaptiver hybrider Verfahren der Choice-based-Conjoint-Analyse

    OpenAIRE

    Bauer, Robert

    2015-01-01

    In dieser Arbeit werden Präferenzen für Automobile mit alternativen Antriebssystemen in Deutschland untersucht. Für die Präferenzanalyse werden adaptive hybride Verfahren der Choice-based-Conjoint-Analyse verwendet. Die Ergebnisse der empirischen Studie zeigen, dass sich die bestehende Heterogenität der Antriebspräferenzen anhand individueller psychografischer Merkmale erklären lässt. Zum Beispiel bevorzugen besonders umweltbewusst eingestellte Personen batterie-elektrische Antriebe im Vergle...

  14. Development and validation of a preference based measure derived from the Cambridge Pulmonary Hypertension Outcome Review (CAMPHOR) for use in cost utility analyses

    OpenAIRE

    Meads David M; Ratcliffe Julie; McKenna Stephen P; Brazier John E

    2008-01-01

    Abstract Background Pulmonary Hypertension is a severe and incurable disease with poor prognosis. A suite of new disease-specific measures – the Cambridge Pulmonary Hypertension Outcome Review (CAMPHOR) – was recently developed for use in this condition. The purpose of this study was to develop and validate a preference based measure from the CAMPHOR that could be used in cost-utility analyses. Methods Items were selected that covered major issues covered by the CAMPHOR QoL scale (activities,...

  15. Determination of S17 from 7Be(d,n)8B reaction CDCC analyses based on three-body model

    CERN Document Server

    Ogata, K; Iseri, Y; Kamimura, M; Ogata, Kazuyuki; Yahiro, Masanobu; Iseri, Yasunori; Kamimura, Masayasu

    2003-01-01

    The astrophysical factor $S_{17}$ for $^7$Be($p,\\gamma$)$^8$B reaction is reliably extracted from the transfer reaction $^7$Be($d,n$)$^8$B at $E=7.5$ MeV with the asymptotic normalization coefficient method. The transfer reaction is accurately analyzed with CDCC based on the three-body model. This analysis is free from uncertainties of the optical potentials having been crucial in the previous DWBA analyses.

  16. Molecular systematics of the Amphisphaeriaceae based on cladistic analyses of partial LSU rDNA gene sequences.

    Science.gov (United States)

    Jeewon, Rajesh; Liew, Edward C Y; Hyde, Kevin D

    2003-12-01

    The Amphisphaeriaceae is an important family of ascomycetes within the Xylariales. There has been, however, disagreement regarding the taxonomic placement of many genera within this family and whether it should be confined to ascomycetes producing Pestalotiopsis-like anamorphs. In this study, phylogenetic relationships among members of the Amphisphaeriaceae are investigated using partial sequences of the 28S rDNA. Molecular data provided further evidence to support the association of several coelomycetous genera with the ascomycetous Amphisphaeriaceae. Phylogenetic analyses also show that all ascomycetous genera possessing Pestalotiopsis-like anamorphs are monophyletic and confirm the anamorphic-teleomorphic connections of some. There is, however, insufficient evidence to support the restriction of Amphisphaeriaceae to genera, which produce Pestalotiopsis-like anamorphs, because the phylogenetic placement of Amphisphaeria umbrina is not fully resolved and its affinities with other members received low bootstrap support. The results also indicate that Iodosphaeria and Arecophila should be excluded from the Amphisphaeriaceae. The placement of Lanceispora in the Amphisphaeriaceae is doubtful. A broad concept of the family Amphisphaeriaceae is advocated until further data are available.

  17. A study on the seismic behavior of a retrofitted building based on nonlinear static and dynamic analyses

    Institute of Scientific and Technical Information of China (English)

    Esra Mete Güneyisi; Gülay Altay

    2005-01-01

    This study describes the seismic performance of an existing five storey reinforced concrete building which represents the typical properties of low-rise non-ductile buildings in Turkey. The effectiveness of shear walls and the steel bracings in retrofitting the building was examined through nonlinear static and dynamic analyses. By using the nonlinear static analysis, retrofitted buildings seismic performances under lateral seismic load were compared with each other.Moreover, the performance points and response levels of the existing and retrofitting cases were determined by way of the capacity-spectrum method described in ATC-40 (1996). For the nonlinear dynamic analysis the records were selected to represent wide ranges of duration and frequency content. Considering the change in the stiffness and the energy dissipation capacities, the performance of the existing and retrofitted buildings were evaluated in terms of story drifts and damage states.It was found that each earthquake record exhibited its own peculiarities, dictated by frequency content, duration, sequence of peaks and their amplitude. The seismic performance of retrofitted buildings resulted in lower displacements and higher energy dissipation capacity depending mainly on the properties of the ground motions and the retrofitting strategies. Moreover,severe structural damage (irreparable or collapse) was observed for the existing building. However, buildings with retrofit alternatives exhibited lower damage levels changing from no damage to irreparable damage states.

  18. ATOP - The Advanced Taiwan Ocean Prediction System Based on the mpiPOM. Part 1: Model Descriptions, Analyses and Results

    Directory of Open Access Journals (Sweden)

    Leo Oey

    2013-01-01

    Full Text Available A data-assimilated Taiwan Ocean Prediction (ATOP system is being developed at the National Central University, Taiwan. The model simulates sea-surface height, three-dimensional currents, temperature and salinity and turbulent mixing. The model has options for tracer and particle-tracking algorithms, as well as for wave-induced Stokes drift and wave-enhanced mixing and bottom drag. Two different forecast domains have been tested: a large-grid domain that encompasses the entire North Pacific Ocean at 0.1° × 0.1° horizontal resolution and 41 vertical sigma levels, and a smaller western North Pacific domain which at present also has the same horizontal resolution. In both domains, 25-year spin-up runs from 1988 - 2011 were first conducted, forced by six-hourly Cross-Calibrated Multi-Platform (CCMP and NCEP reanalysis Global Forecast System (GSF winds. The results are then used as initial conditions to conduct ocean analyses from January 2012 through February 2012, when updated hindcasts and real-time forecasts begin using the GFS winds. This paper describes the ATOP system and compares the forecast results against satellite altimetry data for assessing model skills. The model results are also shown to compare well with observations of (i the Kuroshio intrusion in the northern South China Sea, and (ii subtropical counter current. Review and comparison with other models in the literature of _ are also given.

  19. Breast density changes associated with postmenopausal hormone replacement therapy: post hoc radiologist- and computer-based analyses

    DEFF Research Database (Denmark)

    Nielsen, Mads; Pettersen, Paola; Alexandersen, P;

    2010-01-01

    (1 mg) continuously combined with drospirenone (2 mg) was administered to postmenopausal women for up to 2 years (26 treatment cycles, 28 d/cycle) in a randomized, placebo-controlled trial. This post hoc analysis assessed the changes in breast density measured from digitized images by two radiologist...... mineral density at the spine and femur were also assessed. Results: Breast density assessed by the radiologist-based approaches increased significantly from baseline in the HT group (P < 0.01), with significant divergence from placebo at 2 years (P < 0.01). Heterogeneity examination of radiograph score by...... computer-based technique was unchanged in the HT group and decreased significantly with placebo (P < 0.001) to produce a significant group divergence (P < 0.05). Changes in mammographic markers by radiologist- and computer-based approaches correlated with each other in the HT group (P < 0.01) but not in...

  20. Effects of can parameters on canned-forging process of TiAl base alloy(Ⅰ)--Microstructural analyses

    Institute of Scientific and Technical Information of China (English)

    刘咏; 韦伟峰; 黄伯云; 何双珍; 周科朝; 贺跃辉

    2002-01-01

    By using thermal simulation technique, the conventional canned-forging process of TiAl based alloy was studied. The effect of can parameters on the microstruct ures of TiAl alloy was analyzed in this process. The results show that, the defo rmation microstructure of TiAl based alloy without canning is inhomogeneous. In lateral area, crack and shearing lines can be found; while in central area, fine -grained shearing zone can be found. The effect of can is to reduce the seconda ry tensile stress. However, only when the deformation of the steel can is coinci dental with that of TiAl alloy ingot, can this effect be effective. Moreover, a thick can would enhance the microstructural homogeneity in TiAl based alloy. With the H/D ratio of the ingot increasing, the deformation of TiAl alloy would be more unsteady, therefore, a thicker can should be needed.

  1. Are decisions using cost-utility analyses robust to choice of SF-36/SF-12 preference-based algorithm?

    Directory of Open Access Journals (Sweden)

    Walton Surrey M

    2005-03-01

    Full Text Available Abstract Background Cost utility analysis (CUA using SF-36/SF-12 data has been facilitated by the development of several preference-based algorithms. The purpose of this study was to illustrate how decision-making could be affected by the choice of preference-based algorithms for the SF-36 and SF-12, and provide some guidance on selecting an appropriate algorithm. Methods Two sets of data were used: (1 a clinical trial of adult asthma patients; and (2 a longitudinal study of post-stroke patients. Incremental costs were assumed to be $2000 per year over standard treatment, and QALY gains realized over a 1-year period. Ten published algorithms were identified, denoted by first author: Brazier (SF-36, Brazier (SF-12, Shmueli, Fryback, Lundberg, Nichol, Franks (3 algorithms, and Lawrence. Incremental cost-utility ratios (ICURs for each algorithm, stated in dollars per quality-adjusted life year ($/QALY, were ranked and compared between datasets. Results In the asthma patients, estimated ICURs ranged from Lawrence's SF-12 algorithm at $30,769/QALY (95% CI: 26,316 to 36,697 to Brazier's SF-36 algorithm at $63,492/QALY (95% CI: 48,780 to 83,333. ICURs for the stroke cohort varied slightly more dramatically. The MEPS-based algorithm by Franks et al. provided the lowest ICUR at $27,972/QALY (95% CI: 20,942 to 41,667. The Fryback and Shmueli algorithms provided ICURs that were greater than $50,000/QALY and did not have confidence intervals that overlapped with most of the other algorithms. The ICUR-based ranking of algorithms was strongly correlated between the asthma and stroke datasets (r = 0.60. Conclusion SF-36/SF-12 preference-based algorithms produced a wide range of ICURs that could potentially lead to different reimbursement decisions. Brazier's SF-36 and SF-12 algorithms have a strong methodological and theoretical basis and tended to generate relatively higher ICUR estimates, considerations that support a preference for these algorithms over the

  2. Ein empirischer Vergleich der Prozessaufzeichnungsmethoden Mouselab und Eyetracking bei Präferenzmessungen mittels Choice-based Conjoint Analyse

    DEFF Research Database (Denmark)

    Meissner, Martin; Decker, Reinhold; Pfeiffer, Jella

    2010-01-01

    In choice-based conjoint (CBC) analysis respondents’ decisions in choice settings are used to determine relevant attributes and attribute levels of the products considered. Yet, the cognitive process preceding the choice decision is usually ignored. The eye tracking technique can be used to gain...

  3. A Structural Equation Model to Analyse the Antecedents to Students' Web-Based Problem-Solving Performance

    Science.gov (United States)

    Hwang, Gwo-Jen; Kuo, Fan-Ray

    2015-01-01

    Web-based problem-solving, a compound ability of critical thinking, creative thinking, reasoning thinking and information-searching abilities, has been recognised as an important competence for elementary school students. Some researchers have reported the possible correlations between problem-solving competence and information searching ability;…

  4. Data concatenation, Bayesian concordance and coalescent-based analyses of the species tree for the rapid radiation of Triturus newts.

    Directory of Open Access Journals (Sweden)

    Ben Wielstra

    Full Text Available The phylogenetic relationships for rapid species radiations are difficult to disentangle. Here we study one such case, namely the genus Triturus, which is composed of the marbled and crested newts. We analyze data for 38 genetic markers, positioned in 3-prime untranslated regions of protein-coding genes, obtained with 454 sequencing. Our dataset includes twenty Triturus newts and represents all nine species. Bayesian analysis of population structure allocates all individuals to their respective species. The branching patterns obtained by data concatenation, Bayesian concordance analysis and coalescent-based estimations of the species tree differ from one another. The data concatenation based species tree shows high branch support but branching order is considerably affected by allele choice in the case of heterozygotes in the concatenation process. Bayesian concordance analysis expresses the conflict between individual gene trees for part of the Triturus species tree as low concordance factors. The coalescent-based species tree is relatively similar to a previously published species tree based upon morphology and full mtDNA and any conflicting internal branches are not highly supported. Our findings reflect high gene tree discordance due to incomplete lineage sorting (possibly aggravated by hybridization in combination with low information content of the markers employed (as can be expected for relatively recent species radiations. This case study highlights the complexity of resolving rapid radiations and we acknowledge that to convincingly resolve the Triturus species tree even more genes will have to be consulted.

  5. Re-examining the phylogeny of clinically relevant Candida species and allied genera based on multigene analyses

    NARCIS (Netherlands)

    Tsui, Clement K M; Daniel, Heide-Marie; Robert, Vincent; Meyer, Wieland

    2008-01-01

    Yeasts of the artificial genus Candida include plant endophytes, insect symbionts, and opportunistic human pathogens. Phylogenies based on rRNA gene and actin sequences confirmed that the genus is not monophyletic, and the relationships among Candida species and allied teleomorph genera are not clea

  6. Males in rural Bangladeshi communities are more susceptible to chronic arsenic poisoning than females: analyses based on urinary arsenic.

    Science.gov (United States)

    Watanabe, C; Inaoka, T; Kadono, T; Nagano, M; Nakamura, S; Ushijima, K; Murayama, N; Miyazaki, K; Ohtsuka, R

    2001-12-01

    Spot urine samples were collected from the inhabitants of two rural communities in northwestern Bangladesh. We compared arsenic levels in the urine samples ([As](u); n = 346) with those in water from tube wells ([As](tw); range < 1-535 microg/L; n = 86) on an individual basis. The small variation of [As](u) within subjects and highly positive correlation with [As](tw) indicate that [As](u) is a useful indicator of exposure. Analyses of [As](u) showed that creatinine correction was necessary, that [As](u) only reflected recent exposure, and that there were substantial interindividual differences for a given [As](tw) level. To evaluate the toxic effects of arsenic exposure, we constructed a system for rating skin manifestations, which revealed distinct sex-related differences. Comparison of males and females in the same households confirmed that skin manifestations were more severe in the males, and in the males of one community a dose-response relationship between [As](u) and the degree of skin manifestation was evident. The results of this study indicate that [As](u) in spot urine samples can be used as an exposure indicator for As. They suggest that there might be sex-related, and perhaps community-related, differences in the relationship between [As](u) and skin manifestations, although several confounding factors, including sunlight exposure and smoking habits, might contribute to the observed sex difference. The existence of such differences should be further confirmed and examined in other populations to identify the subpopulations sensitive to chronic arsenic toxicity.

  7. Multi-parametric cytometry from a complex cellular sample: Improvements and limits of manual versus computational-based interactive analyses.

    Science.gov (United States)

    Gondois-Rey, F; Granjeaud, S; Rouillier, P; Rioualen, C; Bidaut, G; Olive, D

    2016-05-01

    The wide possibilities opened by the developments of multi-parametric cytometry are limited by the inadequacy of the classical methods of analysis to the multi-dimensional characteristics of the data. While new computational tools seemed ideally adapted and were applied successfully, their adoption is still low among the flow cytometrists. In the purpose to integrate unsupervised computational tools for the management of multi-stained samples, we investigated their advantages and limits by comparison to manual gating on a typical sample analyzed in immunomonitoring routine. A single tube of PBMC, containing 11 populations characterized by different sizes and stained with 9 fluorescent markers, was used. We investigated the impact of the strategy choice on manual gating variability, an undocumented pitfall of the analysis process, and we identified rules to optimize it. While assessing automatic gating as an alternate, we introduced the Multi-Experiment Viewer software (MeV) and validated it for merging clusters and annotating interactively populations. This procedure allowed the finding of both targeted and unexpected populations. However, the careful examination of computed clusters in standard dot plots revealed some heterogeneity, often below 10%, that was overcome by increasing the number of clusters to be computed. MeV facilitated the identification of populations by displaying both the MFI and the marker signature of the dataset simultaneously. The procedure described here appears fully adapted to manage homogeneously high number of multi-stained samples and allows improving multi-parametric analyses in a way close to the classic approach. © 2016 International Society for Advancement of Cytometry.

  8. Metagenome-based diversity analyses suggest a significant contribution of non-cyanobacterial lineages to carbonate precipitation in modern microbialites

    Directory of Open Access Journals (Sweden)

    Purificacion eLopez-Garcia

    2015-08-01

    Full Text Available Cyanobacteria are thought to play a key role in carbonate formation due to their metabolic activity, but other organisms carrying out oxygenic photosynthesis (photosynthetic eukaryotes or other metabolisms (e.g. anoxygenic photosynthesis, sulfate reduction, may also contribute to carbonate formation. To obtain more quantitative information than that provided by more classical PCR-dependent methods, we studied the microbial diversity of microbialites from the Alchichica crater lake (Mexico by mining for 16S/18S rRNA genes in metagenomes obtained by direct sequencing of environmental DNA. We studied samples collected at the Western (AL-W and Northern (AL-N shores of the lake and, at the latter site, along a depth gradient (1, 5, 10 and 15 m depth. The associated microbial communities were mainly composed of bacteria, most of which seemed heterotrophic, whereas archaea were negligible. Eukaryotes composed a relatively minor fraction dominated by photosynthetic lineages, diatoms in AL-W, influenced by Si-rich seepage waters, and green algae in AL-N samples. Members of the Gammaproteobacteria and Alphaproteobacteria classes of Proteobacteria, Cyanobacteria and Bacteroidetes were the most abundant bacterial taxa, followed by Planctomycetes, Deltaproteobacteria (Proteobacteria, Verrucomicrobia, Actinobacteria, Firmicutes and Chloroflexi. Community composition varied among sites and with depth. Although cyanobacteria were the most important bacterial group contributing to the carbonate precipitation potential, photosynthetic eukaryotes, anoxygenic photosynthesizers and sulfate reducers were also very abundant. Cyanobacteria affiliated to Pleurocapsales largely increased with depth. Scanning electron microscopy (SEM observations showed considerable areas of aragonite-encrusted Pleurocapsa-like cyanobacteria at microscale. Multivariate statistical analyses showed a strong positive correlation of Pleurocapsales and Chroococcales with aragonite formation at

  9. Applications of diagonal chromatography for proteome-wide characterization of protein modifications and activity-based analyses.

    Science.gov (United States)

    Gevaert, Kris; Impens, Francis; Van Damme, Petra; Ghesquière, Bart; Hanoulle, Xavier; Vandekerckhove, Joël

    2007-12-01

    Numerous gel-free proteomics techniques have been reported over the past few years, introducing a move from proteins to peptides as bits of information in qualitative and quantitative proteome studies. Many shotgun proteomics techniques randomly sample thousands of peptides in a qualitative and quantitative manner but overlook the vast majority of protein modifications that are often crucial for proper protein structure and function. Peptide-based proteomic approaches have thus been developed to profile a diverse set of modifications including, but not at all limited, to phosphorylation, glycosylation and ubiquitination. Typical here is that each modification needs a specific, tailor-made analytical procedure. In this minireview, we discuss how one technique - diagonal reverse-phase chromatography - is applied to study two different types of protein modification: protein processing and protein N-glycosylation. Additionally, we discuss an activity-based proteome study in which purine-binding proteins were profiled by diagonal chromatography.

  10. SNP array-based copy number and genotype analyses for preimplantation genetic diagnosis of human unbalanced translocations

    OpenAIRE

    van Uum, Chris MJ; Stevens, Servi JC; Dreesen, Joseph CFM; Drüsedau, Marion; Smeets, Hubert J.; Hollanders-Crombach, Bertien; Die-Smulders, Christine EM de; Geraedts, Joep PM; Engelen, John JM; Coonen, Edith

    2012-01-01

    Preimplantation genetic diagnosis (PGD) for chromosomal rearrangements (CR) is mainly based on fluorescence in situ hybridisation (FISH). Application of this technique is limited by the number of available fluorochromes, the extensive preclinical work-up and technical and interpretative artefacts. We aimed to develop a universal, off-the-shelf protocol for PGD by combining single-nucleotide polymorphism (SNP) array-derived copy number (CN) determination and genotyping for detection of unbalan...

  11. Analysing value-based management as decision-making tool in a petrochemical company / Zonwabele Zweli Tom

    OpenAIRE

    Tom, Zonwabele Zweli

    2014-01-01

    The study aims to evaluate the understanding of value – based management (VBM) as a decision making tool, how it is embraced in all management levels and its impact on the performance of a petrochemical company. The application of VBM links business strategy, finance, performance management and management processes all together to create value. VBM is a powerful management framework with the aim to focus all managerial processes on shareholder value creation. It encourages employees at all...

  12. Aviation and programmatic analyses; Volume 1, Task 1: Aviation data base development and application. [for NASA OAST programs

    Science.gov (United States)

    1977-01-01

    A method was developed for using the NASA aviation data base and computer programs in conjunction with the GE management analysis and projection service to perform simple and complex economic analysis for planning, forecasting, and evaluating OAST programs. Capabilities of the system are discussed along with procedures for making basic data tabulations, updates and entries. The system is applied in an agricultural aviation study in order to assess its value for actual utility in the OAST working environment.

  13. An automatic generation of non-uniform mesh for CFD analyses of image-based multiscale human airway models

    Science.gov (United States)

    Miyawaki, Shinjiro; Tawhai, Merryn H.; Hoffman, Eric A.; Lin, Ching-Long

    2014-11-01

    The authors have developed a method to automatically generate non-uniform CFD mesh for image-based human airway models. The sizes of generated tetrahedral elements vary in both radial and longitudinal directions to account for boundary layer and multiscale nature of pulmonary airflow. The proposed method takes advantage of our previously developed centerline-based geometry reconstruction method. In order to generate the mesh branch by branch in parallel, we used the open-source programs Gmsh and TetGen for surface and volume meshes, respectively. Both programs can specify element sizes by means of background mesh. The size of an arbitrary element in the domain is a function of wall distance, element size on the wall, and element size at the center of airway lumen. The element sizes on the wall are computed based on local flow rate and airway diameter. The total number of elements in the non-uniform mesh (10 M) was about half of that in the uniform mesh, although the computational time for the non-uniform mesh was about twice longer (170 min). The proposed method generates CFD meshes with fine elements near the wall and smooth variation of element size in longitudinal direction, which are required, e.g., for simulations with high flow rate. NIH Grants R01-HL094315, U01-HL114494, and S10-RR022421. Computer time provided by XSEDE.

  14. Spatially explicit power analyses for occupancy-based monitoring of wolverine in the U.S. Rocky Mountains.

    Science.gov (United States)

    Ellis, Martha M; Ivan, Jacob S; Schwartz, Michael K

    2014-02-01

    Conservation scientists and resource managers often have to design monitoring programs for species that are rare or patchily distributed across large landscapes. Such programs are frequently expensive and seldom can be conducted by one entity. It is essential that a prospective power analysis be undertaken to ensure stated monitoring goals are feasible. We developed a spatially based simulation program that accounts for natural history, habitat use, and sampling scheme to investigate the power of monitoring protocols to detect trends in population abundance over time with occupancy-based methods. We analyzed monitoring schemes with different sampling efforts for wolverine (Gulo gulo) populations in 2 areas of the U.S. Rocky Mountains. The relation between occupancy and abundance was nonlinear and depended on landscape, population size, and movement parameters. With current estimates for population size and detection probability in the northern U.S. Rockies, most sampling schemes were only able to detect large declines in abundance in the simulations (i.e., 50% decline over 10 years). For small populations reestablishing in the Southern Rockies, occupancy-based methods had enough power to detect population trends only when populations were increasing dramatically (e.g., doubling or tripling in 10 years), regardless of sampling effort. In general, increasing the number of cells sampled or the per-visit detection probability had a much greater effect on power than the number of visits conducted during a survey. Although our results are specific to wolverines, this approach could easily be adapted to other territorial species. PMID:24001256

  15. Suicidality and aggression during antidepressant treatment: systematic review and meta-analyses based on clinical study reports

    Science.gov (United States)

    Guski, Louise Schow; Freund, Nanna; Gøtzsche, Peter C

    2016-01-01

    Objective To study serious harms associated with selective serotonin and serotonin-norepinephrine reuptake inhibitors. Design Systematic review and meta-analysis. Main outcome measures Mortality and suicidality. Secondary outcomes were aggressive behaviour and akathisia. Data sources Clinical study reports for duloxetine, fluoxetine, paroxetine, sertraline, and venlafaxine obtained from the European and UK drug regulators, and summary trial reports for duloxetine and fluoxetine from Eli Lilly’s website. Eligibility criteria for study selection Double blind placebo controlled trials that contained any patient narratives or individual patient listings of harms. Data extraction and analysis Two researchers extracted data independently; the outcomes were meta-analysed by Peto’s exact method (fixed effect model). Results We included 70 trials (64 381 pages of clinical study reports) with 18 526 patients. These trials had limitations in the study design and discrepancies in reporting, which may have led to serious under-reporting of harms. For example, some outcomes appeared only in individual patient listings in appendices, which we had for only 32 trials, and we did not have case report forms for any of the trials. Differences in mortality (all deaths were in adults, odds ratio 1.28, 95% confidence interval 0.40 to 4.06), suicidality (1.21, 0.84 to 1.74), and akathisia (2.04, 0.93 to 4.48) were not significant, whereas patients taking antidepressants displayed more aggressive behaviour (1.93, 1.26 to 2.95). For adults, the odds ratios were 0.81 (0.51 to 1.28) for suicidality, 1.09 (0.55 to 2.14) for aggression, and 2.00 (0.79 to 5.04) for akathisia. The corresponding values for children and adolescents were 2.39 (1.31 to 4.33), 2.79 (1.62 to 4.81), and 2.15 (0.48 to 9.65). In the summary trial reports on Eli Lilly’s website, almost all deaths were noted, but all suicidal ideation events were missing, and the information on the remaining outcomes was

  16. Evidence for simvastatin anti-inflammatory actions based on quantitative analyses of NETosis and other inflammation/oxidation markers

    Directory of Open Access Journals (Sweden)

    Walid M. Al-Ghoul

    2014-01-01

    Full Text Available Simvastatin (SMV has been shown to exhibit promising anti-inflammatory properties alongside its classic cholesterol lowering action. We tested these emerging effects in a major thermal injury mouse model (3rd degree scald, ~20% TBSA with previously documented, inflammation-mediated intestinal defects. Neutrophil extracellular traps (NETs inflammation measurement methods were used alongside classic gut mucosa inflammation and leakiness measurements with exogenous melatonin treatment as a positive control. Our hypothesis is that simvastatin has protective therapeutic effects against early postburn gut mucosa inflammation and leakiness. To test this hypothesis, we compared untreated thermal injury (TI adult male mice with TI littermates treated with simvastatin (0.2 mg/kg i.p., TI+SMV immediately following burn injury and two hours before being sacrificed the day after; melatonin-treated (Mel (1.86 mg/kg i.p., TI+Mel mice were compared as a positive control. Mice were assessed for the following: (1 tissue oxidation and neutrophil infiltration in terminal ileum mucosa using classic carbonyl, Gr-1, and myeloperoxidase immunohistochemical or biochemical assays, (2 NETosis in terminal ileum and colon mucosa homogenates and peritoneal and fluid blood samples utilizing flow cytometric analyses of the surrogate NETosis biomarkers, picogreen and Gr-1, and (3 transepithelial gut leakiness as measured in terminal ileum and colon with FITC-dextran and transepithelial electrical resistance (TEER. Our results reveal that simvastatin and melatonin exhibit consistently comparable therapeutic protective effects against the following: (1 gut mucosa oxidative stress as revealed in the terminal ileum by markers of protein carbonylation as well as myeloperoxidase (MPO and Gr-1 infiltration, (2 NETosis as revealed in the gut milieu, peritoneal lavage and plasma utilizing picogreen and Gr-1 flow cytometry and microscopy, and (3 transepithelial gut leakiness as assessed

  17. Laser Beam Focus Analyser

    DEFF Research Database (Denmark)

    Nielsen, Peter Carøe; Hansen, Hans Nørgaard; Olsen, Flemming Ove;

    2007-01-01

    The quantitative and qualitative description of laser beam characteristics is important for process implementation and optimisation. In particular, a need for quantitative characterisation of beam diameter was identified when using fibre lasers for micro manufacturing. Here the beam diameter limits...... the obtainable features in direct laser machining as well as heat affected zones in welding processes. This paper describes the development of a measuring unit capable of analysing beam shape and diameter of lasers to be used in manufacturing processes. The analyser is based on the principle of a rotating...... mechanical wire being swept through the laser beam at varying Z-heights. The reflected signal is analysed and the resulting beam profile determined. The development comprised the design of a flexible fixture capable of providing both rotation and Z-axis movement, control software including data capture...

  18. Energy and exergy based performance analyses of a solid oxide fuel cell integrated combined cycle power plant

    International Nuclear Information System (INIS)

    Highlights: • Energy and exergy based performance of SOFC integrated combined cycle is presented. • The system utilize the GT exhaust for fuel preheating, air preheating and steam generation. • The study considers the effect of additional fuel burning in the combustion chamber. • Detail parametric analysis is presented to show the effect of various operating parameters. • System performance is compared with another system with air recuperator before fuel recuperator. - Abstract: This article provides the energy and exergy based performance analysis of a solid oxide fuel cell (SOFC) – gas turbine (GT) – steam turbine (ST) combined cycle power plant. The system utilizes the GT exhaust heat for fuel and air preheating subsequently in a fuel recuperator (FR) and an air recuperator (AR) before finally producing steam in a heat recovery steam generator (HRSG) coupled with the ST cycle. It considers 30% external reforming in a pre-reformer (PR) by steam extracted from the bottoming ST plant. The study considers the effect of additional fuel burning in the combustion chamber (CC) as a means for increasing the net GT and ST power output. A detailed parametric analysis based on variation of compressor pressure ratio (CPR), fuel flow rate (FFR), air flow rate (AFR), current density, single level boiler pressure and ST inlet temperature (STIT) is also provided. Results indicate improved system performance at higher CPR. The optimum single level boiler pressure is found to be 40 bar with 50% additional fuel burning. Burning of additional fuel improves the GT and ST power output, however with reduction in the plant’s overall efficiency. Further comparison of performance with a similar other system where the AR is placed head of the FR indicates slightly better performance of the proposed system with FR ahead of AR (FRAOAR)

  19. Analyses on gravity variation before and after the Lijiang earthquake based on a finite rectangular dislocation model

    Institute of Scientific and Technical Information of China (English)

    燕乃玲; 李辉; 申重阳

    2003-01-01

    The methods were discussed to calculate the gravity variation due to crustal deformation based on a model of dislocation on a finite rectangular plane. Taking the Lijiang MS=7.0 earthquake as an example the calculating principle of fault parameters were determined, and the results were given. Of particular interests were the characteristics of the gravity variations in different dislocation types.With comparison between the calculated results and the practical measurements, it was found that the model could to some extent account for the observations. But it failed to give explanations to the more far spatial gravity variation.

  20. Increased risk of stroke in hypertensive women using hormone therapy: analyses based on the Danish Nurse Study

    DEFF Research Database (Denmark)

    Løkkegaard, Ellen; Jovanovic, Zorana; Heitmann, Berit L;

    2003-01-01

    paid to identifying subgroups of women who are particularly sensitive to HT. OBJECTIVES: To investigate the risk of various stroke outcomes among women using HT based primarily on estradiol-17beta (unopposed or combined with norethisterone acetate) and to assess the potential modifying effect......,122) free of previous major cardiovascular and cerebrovascular disease and cancer. MAIN OUTCOME MEASURE: Ischemic or hemorrhagic stroke (n = 144) identified in the national registries of hospital discharges and cause of deaths in the total follow-up through December 31, 1998. RESULTS: In 1993, 28...

  1. A Microarray Based Genomic Hybridization Method for Identification of New Genes in Plants: Case Analyses of Arabidopsis and Oryza

    Institute of Scientific and Technical Information of China (English)

    Chuanzhu Fan; Maria D. Vibranovski; Ying Chen; Manyuan Long

    2007-01-01

    To systematically estimate the gene duplication events in closely related species, we have to use comparative genomic approaches, either through genomic sequence comparison or comparative genomic hybridization (CGH). Given the scarcity of complete genomic sequences of plant species, in the present study we adopted an array based CGH to investigate gene duplications in the genus Arabidopsis. Fragment genomic DNA from four species, namely Arabidopsis thaliana, A. lyrata subsp. lyrata, A. lyrata subsp. petraea, and A. halleri, was hybridized to Affymetrix (Santa Clara, CA, USA) tiling arrays that are designed from the genomic sequences of A. thaliana. Pairwise comparisons of signal intensity were made to infer the potential duplicated candidates along each phylo-genetic branch. Ninety-four potential candidates of gene duplication along the genus were identified. Among them, the majority (69 of 94) were A. thaliana lineage specific. This result indicates that the array based CGH approach may be used to identify candidates of duplication in other plant genera containing closely related species, such as Oryza, particularly for the AA genome species. We compared the degree of gene duplication through retrotransposon between O. sativa and A. thaliana and found a strikingly higher number of chimera retroposed genes in rice. The higher rate of gene duplication through retroposition and other mechanisms may indicate that the grass species is able to adapt to more diverse environments.

  2. iTRAQ-based quantitative proteomic analyses on the gender-specific responses in mussel Mytilus galloprovincialis to tetrabromobisphenol A.

    Science.gov (United States)

    Ji, Chenglong; Wu, Huifeng; Wei, Lei; Zhao, Jianmin

    2014-12-01

    Tetrabromobisphenol A (TBBPA) accounts for the largest production of brominated flame-retardants (BFRs) along the Laizhou Bay in China and is the most widely used BFR in industrial products. It can induce diverse toxicities including hepatotoxicity, nephrotoxicity, neurotoxicity and endocrine disrupting effects in mammalian and fish models. In this work, we applied iTRAQ-based proteomics to investigate the gender-specific responses in mussel Mytilus galloprovincialis to TBBPA. Thirty-one proteins were differentially expressed in hepatopancreas between male and female mussels, which clearly indicated the biological differences between male and female mussels at the protein level. After exposure of TBBPA (18.4 nmol/L) for one month, a total of 60 proteins were differentially expressed in response to the TBBPA treatment in mussel hepatopancreas, among which 33 and 29 proteins were significantly altered in TBBPA-treated male and female mussel samples, respectively. Only two of the 60 proteins were commonly altered in both male and female mussel samples exposed to TBBPA. Based on KEGG analysis, these differentially expressed proteins of TBBPA-induced effects were assigned to several groups, including cytoskeleton, reproduction and development, metabolism, signal transduction, gene expression, stress response and apoptosis. Overall, results indicated that TBBPA exposure could induce apoptosis, oxidative and immune stresses and disruption in energy, protein and lipid metabolisms in both male and female mussels with different mechanisms. This work suggested that the gender differences should be considered in ecotoxicoproteomics.

  3. Implementation of analyses based on social media data for marketing purposes in academic and scientific organizations in practice – opportunities and limitations

    Directory of Open Access Journals (Sweden)

    Magdalena Grabarczyk-Tokaj

    2013-12-01

    Full Text Available The article is focused on the issue of practice use of analyses, based on data collected in social media, for institutions’ communication and marketing purposes. The subject is being discussed from the perspective of Digital Darwinism — situation, when development of technologies and new means of communication is significantly faster than growth in the knowledge and digital skills among organizations eager to implement those solutions. To diminish negative consequences of Digital Darwinism institutions can broaden their knowledge with analyses of data from cyber space to optimize operations, and make use of running dialog and cooperation with prosuments to face dynamic changes in trends, technologies and society. Information acquired from social media user generated content can be employed as guidelines in planning, running and evaluating communication and marketing activities. The article presents examples of tools and solutions, that can be implement in practice as a support for actions taken by institutions.

  4. Comparative physical-chemical characterization of encapsulated lipid-based isotretinoin products assessed by particle size distribution and thermal behavior analyses

    Energy Technology Data Exchange (ETDEWEB)

    Guimaraes, Carla Aiolfi, E-mail: carlaaiolfi@usp.br [Department of Pharmacy, Faculty of Pharmaceutical Sciences, University of Sao Paulo, Sao Paulo, SP 05508-000 (Brazil); Menaa, Farid [Department of Dermatology, School of Medicine Wuerzburg, Wuerzburg 97080 (Germany); Fluorotronics, Inc., 1425 Russ Bvld, San Diego Technology Incubator, San Diego, CA 92101 (United States); Menaa, Bouzid, E-mail: bouzid.menaa@gmail.com [Fluorotronics, Inc., 1425 Russ Bvld, San Diego Technology Incubator, San Diego, CA 92101 (United States); Quenca-Guillen, Joyce S. [Department of Pharmacy, Faculty of Pharmaceutical Sciences, University of Sao Paulo, Sao Paulo, SP 05508-000 (Brazil); Matos, Jivaldo do Rosario [Department of Fundamental Chemistry, Institute of Chemistry, University of Sao Paulo, Sao Paulo, SP 05508-000 (Brazil); Mercuri, Lucildes Pita [Department of Exact and Earth Sciences, Federal University of Sao Paulo, Diadema, SP 09972-270 (Brazil); Braz, Andre Borges [Department of Engineering of Mines and Oil, Polytechnical School, University of Sao Paulo, SP 05508-900 (Brazil); Rossetti, Fabia Cristina [Department of Pharmaceutical Sciences, Faculty of Pharmaceutical Sciences of Ribeirao Preto, University of Sao Paulo, Ribeirao Preto, SP 14015-120 (Brazil); Kedor-Hackmann, Erika Rosa Maria; Santoro, Maria Ines Rocha Miritello [Department of Pharmacy, Faculty of Pharmaceutical Sciences, University of Sao Paulo, Sao Paulo, SP 05508-000 (Brazil)

    2010-06-10

    Isotretinoin is the drug of choice for the management of severe recalcitrant nodular acne. Nevertheless, some of its physical-chemical properties are still poorly known. Hence, the aim of our study consisted to comparatively evaluate the particle size distribution (PSD) and characterize the thermal behavior of the three encapsulated isotretinoin products in oil suspension (one reference and two generics) commercialized in Brazil. Here, we show that the PSD, estimated by laser diffraction and by polarized light microscopy, differed between the generics and the reference product. However, the thermal behavior of the three products, determined by thermogravimetry (TGA), differential thermal (DTA) analyses and differential scanning calorimetry (DSC), displayed no significant changes and were more thermostable than the isotretinoin standard used as internal control. Thus, our study suggests that PSD analyses in isotretinoin lipid-based formulations should be routinely performed in order to improve their quality and bioavailability.

  5. Analyses on schedule-cost coefficient correlation of spaceflight project based on historical statistics and its application

    Institute of Scientific and Technical Information of China (English)

    Liu Yanqiong; Chen Yingwu

    2006-01-01

    When analyze the uncertainty of the cost and the schedule of the spaceflight project, it is needed to know the value of the schedule-cost correlation coefficient. This paper deduces the schedule distribution, considering the effect of the cost, and proposes the estimation formula of the correlation coefficient between the ln(schedule) and the cost. On the basis of the fact and Taylor expansion, the relation expression between the schedule-cost correlation coefficient and the ln-schedule-cost correlation coefficient is put forward. By analyzing the value features of the estimation formula of the ln-schedule-cost correlation coefficient, the general rules are proposed to ascertain the value of the schedule-cost correlation coefficient. An example is given to demonstrate how to approximately amend the schedule-cost correlation coefficient based on the historical statistics, which reveals the traditional assigned value is inaccurate. The universality of this estimation method is analyzed.

  6. Degradation of dental ZrO2-based materials after hydrothermal fatigue. Part I: XRD, XRF, and FESEM analyses.

    Science.gov (United States)

    Perdigão, Jorge; Pinto, Ana M; Monteiro, Regina C C; Braz Fernandes, Francisco M; Laranjeira, Pedro; Veiga, João P

    2012-01-01

    The aim was to investigate the effect of simulated low-temperature degradation (s-LTD) and hydrothermal fatigue on the degradation of three ZrO(2)-based dental materials. Lava, IPS, and NanoZr discs were randomly assigned to (1) Control-Storage in distilled water at 37°C; (2) Aging at 134°C for 5 h (s-LTD); (3) Thermocycling in saliva for 30,000 cycles (TF). XRD revealed that ZrO(2) m phase was identified in all groups but TF increased the m phase only for Lava. Under the FESEM, Lava showed no alterations under s-LTD, but displayed corrosion areas up to 60 µm wide after TF. We conclude that TF accelerated the degradation of Lava through an increase in the m phase and grain pull-out from the material surface. PMID:22447060

  7. Increased risk of stroke in hypertensive women using hormone therapy: analyses based on the Danish Nurse Study

    DEFF Research Database (Denmark)

    Løkkegaard, Ellen; Jovanovic, Zorana; Heitmann, Berit L;

    2003-01-01

    BACKGROUND: Recent randomized clinical trials suggest an increased risk of stroke with hormone therapy (HT), whereas observational studies have suggested mixed results. Differences in design, definitions of HT exposure, and stroke outcome may explain these discrepancies. Little attention has been...... paid to identifying subgroups of women who are particularly sensitive to HT. OBJECTIVES: To investigate the risk of various stroke outcomes among women using HT based primarily on estradiol-17beta (unopposed or combined with norethisterone acetate) and to assess the potential modifying effect...... by presence of risk factors for stroke. DESIGN: Prospective cohort study. SETTING: In 1993, the Danish Nurse Study was established, and questionnaires on lifestyle and HT use were sent to all Danish nurses older than 44 years, of whom 19,898 (85.8%) replied. PARTICIPANTS: Postmenopausal women (n = 13...

  8. Flood Mapping and Flood Dynamics of the Mekong Delta: ENVISAT-ASAR-WSM Based Time Series Analyses

    Directory of Open Access Journals (Sweden)

    Stefan Dech

    2013-02-01

    Full Text Available Satellite remote sensing is a valuable tool for monitoring flooding. Microwave sensors are especially appropriate instruments, as they allow the differentiation of inundated from non-inundated areas, regardless of levels of solar illumination or frequency of cloud cover in regions experiencing substantial rainy seasons. In the current study we present the longest synthetic aperture radar-based time series of flood and inundation information derived for the Mekong Delta that has been analyzed for this region so far. We employed overall 60 Envisat ASAR Wide Swath Mode data sets at a spatial resolution of 150 meters acquired during the years 2007–2011 to facilitate a thorough understanding of the flood regime in the Mekong Delta. The Mekong Delta in southern Vietnam comprises 13 provinces and is home to 18 million inhabitants. Extreme dry seasons from late December to May and wet seasons from June to December characterize people’s rural life. In this study, we show which areas of the delta are frequently affected by floods and which regions remain dry all year round. Furthermore, we present which areas are flooded at which frequency and elucidate the patterns of flood progression over the course of the rainy season. In this context, we also examine the impact of dykes on floodwater emergence and assess the relationship between retrieved flood occurrence patterns and land use. In addition, the advantages and shortcomings of ENVISAT ASAR-WSM based flood mapping are discussed. The results contribute to a comprehensive understanding of Mekong Delta flood dynamics in an environment where the flow regime is influenced by the Mekong River, overland water-flow, anthropogenic floodwater control, as well as the tides.

  9. Method for evaluating an extended Fault Tree to analyse the dependability of complex systems: Application to a satellite-based railway system

    International Nuclear Information System (INIS)

    Evaluating dependability of complex systems requires the evolution of the system states over time to be analysed. The problem is to develop modelling approaches that take adequately the evolution of the different operating and failed states of the system components into account. The Fault Tree (FT) is a well-known method that efficiently analyse the failure causes of a system and serves for reliability and availability evaluations. As FT is not adapted to dynamic systems with repairable multi-state components, extensions of FT (eFT) have been developed. However efficient quantitative evaluation processes of eFT are missing. Petri nets have the advantage of allowing such evaluation but their construction is difficult to manage and their simulation performances are unsatisfactory. Therefore, we propose in this paper a new powerful process to analyse quantitatively eFT. This is based on the use of PN method, which relies on the failed states highlighted by the eFT, combined with a new analytical modelling approach for critical events that depend on time duration. The performances of the new process are demonstrated through a theoretical example of eFT and the practical use of the method is shown on a satellite-based railway system. - Highlights: • New approach modelling critical events stemming from degraded-state duration. • Evaluating a repairable, multi-state and time duration dependent Fault Tree. • Practical solution for dependability analysis of a GNSS-based localisation. • Taking into account the local impacts on the GNSS-based localisation

  10. Life-Cycle Analyses of Energy Consumption and GHG Emissions of Natural Gas-Based Alternative Vehicle Fuels in China

    Directory of Open Access Journals (Sweden)

    Xunmin Ou

    2013-01-01

    Full Text Available Tsinghua life-cycle analysis model (TLCAM has been used to examine the primary fossil energy consumption and greenhouse gas (GHG emissions for natural gas- (NG- based alternative vehicle fuels in China. The results show that (1 compress NG- and liquid NG-powered vehicles have similar well-to-wheels (WTW fossil energy uses to conventional gasoline- and diesel-fueled vehicles, but differences emerge with the distance of NG transportation. Additionally, thanks to NG having a lower carbon content than petroleum, CNG- and LNG-powered vehicles emit 10–20% and 5–10% less GHGs than gasoline- and diesel-fueled vehicles, respectively; (2 gas-to-liquid- (GTL- powered vehicles involve approximately 50% more WTW fossil energy uses than conventional gasoline- and diesel-fueled vehicles, primarily because of the low efficiency of GTL production. Nevertheless, since NG has a lower carbon content than petroleum, GTL-powered vehicles emit approximately 30% more GHGs than conventional-fuel vehicles; (3 The carbon emission intensity of the LNG energy chain is highly sensitive to the efficiency of NG liquefaction and the form of energy used in that process.

  11. NMR-based metabonomic analyses of the effects of ultrasmall superparamagnetic particles of iron oxide (USPIO) on macrophage metabolism

    Energy Technology Data Exchange (ETDEWEB)

    Feng Jianghua [Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences, State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics (China); Zhao Jing [China Institute of Atomic Energy (China); Hao Fuhua [Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences, State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics (China); Chen Chang [Institute of Biophysics, The Chinese Academy of Sciences, National Laboratory of Biomacromolecules (China); Bhakoo, Kishore [Singapore Bioimaging Consortium Agency for Science, Technology and Research (A-STAR) (Singapore); Tang, Huiru, E-mail: huiru.tang@wipm.ac.cn [Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences, State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics (China)

    2011-05-15

    The metabonomic changes in murine RAW264.7 macrophage-like cell line induced by ultrasmall superparamagnetic particles of iron oxides (USPIO) have been investigated, by analyzing both the cells and culture media, using high-resolution NMR in conjunction with multivariate statistical methods. Upon treatment with USPIO, macrophage cells showed a significant decrease in the levels of triglycerides, essential amino acids such as valine, isoleucine, and choline metabolites together with an increase of glycerophospholipids, tyrosine, phenylalanine, lysine, glycine, and glutamate. Such cellular responses to USPIO were also detectable in compositional changes of cell media, showing an obvious depletion of the primary nutrition molecules, such as glucose and amino acids and the production of end-products of glycolysis, such as pyruvate, acetate, and lactate and intermediates of TCA cycle such as succinate and citrate. At 48 h treatment, there was a differential response to incubation with USPIO in both cell metabonome and medium components, indicating that USPIO are phagocytosed and released by macrophages. Furthermore, information on cell membrane modification can be derived from the changes in choline-like metabolites. These results not only suggest that NMR-based metabonomic methods have sufficient sensitivity to identify the metabolic consequences of murine RAW264.7 macrophage-like cell line response to USPIO in vitro, but also provide useful information on the effects of USPIO on cellular metabolism.

  12. Recombination structure and genetic relatedness among members of the family Bromoviridae based on their RNAs 1 and 2 sequence analyses.

    Science.gov (United States)

    Boulila, Moncef

    2009-06-01

    In determining putative recombination events and their evolution rates in the RNAs 1 and 2 of currently the known members of the family Bromoviridae, a detailed study comprising 107 accessions retrieved from the international databases, has been carried out by using RECCO and RDP v3.31beta algorithms. These programs allowed the detection of potential recombination sites in all the five virus genera composing the family Bromoviridae with various degrees of consistency. The RNAs 1 and 2 showed inferred phylogenies fully congruent and clearly delineated five clusters representing the five studied virus genera. In this respect, we proposed to classify the Ilarviruses in three distinct subgroups instead of 10 as mentioned in several reports of the International Committee on Taxonomy of Viruses where its suggestions were based on antigenic differences. Moreover, we confirmed that Alfalfa mosaic virus should be considered as a component of the Ilarvirus genus instead of being the unique representative of Alfamovirus genus. In addition, Pelargonium zonate spot and Olive latent 2 viruses fully deserve their affiliation to the family Bromoviridae. PMID:19255837

  13. Lack of Spatial Subdivision for the Snapper Lutjanus purpureus (Lutjanidae - Perciformes) from Southwest Atlantic Based on Multi-Locus Analyses.

    Science.gov (United States)

    da Silva, Raimundo; Sampaio, Iracilda; Schneider, Horacio; Gomes, Grazielle

    2016-01-01

    The Caribbean snapper Lutjanus purpureus is a marine species fish commonly found associated with rocky seabeds and is widely distributed along of Western Atlantic. Data on stock delineation and stock recognition are essential for establishing conservation measures for commercially fished species. However, few studies have investigated the population genetic structure of this economically valuable species, and previous studies (based on only a portion of the mitochondrial DNA) provide an incomplete picture. The present study used a multi-locus approach (12 segments of mitochondrial and nuclear DNA) to elucidate the levels of genetic diversity and genetic connectivity of L. purpureus populations and their demographic history. L. purpureus has high levels of genetic diversity, which probably implies in high effective population sizes values for the species. The data show that this species is genetically homogeneous throughout the geographic region analyzed, most likely as a result of dispersal during larval phase. Regarding demographic history, a historical population growth event occurred, likely due to sea level changes during the Pleistocene.

  14. Lack of Spatial Subdivision for the Snapper Lutjanus purpureus (Lutjanidae - Perciformes) from Southwest Atlantic Based on Multi-Locus Analyses.

    Science.gov (United States)

    da Silva, Raimundo; Sampaio, Iracilda; Schneider, Horacio; Gomes, Grazielle

    2016-01-01

    The Caribbean snapper Lutjanus purpureus is a marine species fish commonly found associated with rocky seabeds and is widely distributed along of Western Atlantic. Data on stock delineation and stock recognition are essential for establishing conservation measures for commercially fished species. However, few studies have investigated the population genetic structure of this economically valuable species, and previous studies (based on only a portion of the mitochondrial DNA) provide an incomplete picture. The present study used a multi-locus approach (12 segments of mitochondrial and nuclear DNA) to elucidate the levels of genetic diversity and genetic connectivity of L. purpureus populations and their demographic history. L. purpureus has high levels of genetic diversity, which probably implies in high effective population sizes values for the species. The data show that this species is genetically homogeneous throughout the geographic region analyzed, most likely as a result of dispersal during larval phase. Regarding demographic history, a historical population growth event occurred, likely due to sea level changes during the Pleistocene. PMID:27556738

  15. Use of the LIBS method in oil paintings examination based on examples of analyses conducted at the Wilanow Palace Museum

    Science.gov (United States)

    Modzelewska, ElŻbieta; Pawlak, Agnieszka; Selerowicz, Anna; Skrzeczanowski, Wojciech; Marczak, Jan

    2013-05-01

    This paper describes the preliminary results of a study of the paint layers in 17th-century paintings belonging to the collection of the Wilanow Palace Museum. The works chosen for examination are of great importance to the Museum, as they might have been painted by court artists of King John III Sobieski. The aim of the study was therefore to determine the technological structure of the paintings, to determine the scope of conservation interventions and, above all, to gather comparative material that would serve to conduct further multidisciplinary attributive research. The presentation relates to studies in which laser-induced breakdown spectroscopy (LIBS) and optical microscopy were used as diagnostic tools. LIBS is based on the evaporation of a small amount of the material under investigation, and the generation of plasma which emits continuum and line radiation. The analysis of line radiation allows us to identify the elements appearing in the sample being investigated. The microscope pictures were taken using a Bresser Digital Hand Micro 1.3Mpx and the Hirox 8700 microscopes. The results obtained have confirmed the utility of the LIBS method in the study of artworks. They have also proven that it can be used as a method to complement microchemical analysis, as well as an method to identify and examine artworks from which samples cannot be taken, as it is micro-destructive and the analysis can be conducted directly on the object, without the need to take samples.

  16. Purity analyses of high-purity organic compounds with nitroxyl radicals based on the Curie–Weiss law

    Energy Technology Data Exchange (ETDEWEB)

    Matsumoto, Nobuhiro, E-mail: nobu-matsumoto@aist.go.jp; Shimosaka, Takuya [National Metrology Institute of Japan (NMIJ), National Institute of Advanced Industrial Science and Technology (AIST), AIST Central-3, 1-1-1 Umezono, Tsukuba, Ibaraki 305-8563 (Japan)

    2015-05-07

    This work reports an attempt to quantify the purities of powders of high-purity organic compounds with stable nitroxyl radicals (namely, 2,2,6,6-tetramethylpiperidine 1-oxyl (TEMPO), 1-oxyl-2,2,6,6-tetramethyl-4-hydroxypiperidine (TEMPOL), and 4-hydroxy-2,2,6,6-tetramethylpiperidine 1-oxyl benzoate (4-hydroxy-TEMPO benzoate)) in terms of mass fractions by using our “effective magnetic moment method,” which is based on both the Curie–Weiss law and a fundamental equation of electron paramagnetic resonance (ESR). The temperature dependence of the magnetic moment resulting from the radicals was measured with a superconducting quantum interference device magnetometer. The g value for each compound was measured with an X-band ESR spectrometer. The results of the purities were (0.998 ± 0.064) kg kg{sup −1} for TEMPO, (1.019 ± 0.040) kg kg{sup −1} for TEMPOL, and (1.001 ± 0.048) kg kg{sup −1} for 4-hydroxy-TEMPO benzoate. These results demonstrate that this analytical method as a future candidate of potential primary direct method can measure the purities with expanded uncertainties of approximately 5%.

  17. Purity analyses of high-purity organic compounds with nitroxyl radicals based on the Curie-Weiss law

    Science.gov (United States)

    Matsumoto, Nobuhiro; Shimosaka, Takuya

    2015-05-01

    This work reports an attempt to quantify the purities of powders of high-purity organic compounds with stable nitroxyl radicals (namely, 2,2,6,6-tetramethylpiperidine 1-oxyl (TEMPO), 1-oxyl-2,2,6,6-tetramethyl-4-hydroxypiperidine (TEMPOL), and 4-hydroxy-2,2,6,6-tetramethylpiperidine 1-oxyl benzoate (4-hydroxy-TEMPO benzoate)) in terms of mass fractions by using our "effective magnetic moment method," which is based on both the Curie-Weiss law and a fundamental equation of electron paramagnetic resonance (ESR). The temperature dependence of the magnetic moment resulting from the radicals was measured with a superconducting quantum interference device magnetometer. The g value for each compound was measured with an X-band ESR spectrometer. The results of the purities were (0.998 ± 0.064) kg kg-1 for TEMPO, (1.019 ± 0.040) kg kg-1 for TEMPOL, and (1.001 ± 0.048) kg kg-1 for 4-hydroxy-TEMPO benzoate. These results demonstrate that this analytical method as a future candidate of potential primary direct method can measure the purities with expanded uncertainties of approximately 5%.

  18. Preliminary assessment of late quaternary vegetation and climate of southeastern Utah based on analyses of packrat middens

    International Nuclear Information System (INIS)

    Packrat midden sequences from two caves (elevations 1585 and 2195 m; 5200 and 7200 ft) southwest of the Abajo Mountains in southeast Utah record vegetation changes that are attributed to climatic changes occurring during the last 13,000 years. These data are useful in assessing potential future climates at proposed nuclear waste sites in the area. Paleoclimates are reconstructed by defining modern elevational analogs for the vegetation assemblages identified in the middens. Based on the midden record, a climate most extreme from the present occurred prior to approximately 10,000 years before present (BP), when mean annual temperature was probably 3 to 4C (5.5 to 7F) cooler than present. However, cooling could not have exceeded 5C (9F) at 1585 m (5200 ft). Accompanying mean annual precipitation is estimated to have been from 35 to 140% greater than at present, with rainfall concentrated in the winter months. Vegetational changes beginning approximately 10,000 years BP are attributed to increased summer and mean annual temperatures, a decreasing frequency of spring freezes, and a shift from winter- to summer-dominant rainfall. Greater effective moisture than present is inferred at both cave sites from approximately 8000 to 4000 years BP. Modern flora was present at both sites by about 2000 years BP

  19. Partial reconfiguration of a peripheral in an FPGA-based SoC to analyse performance-area behaviour

    Science.gov (United States)

    Cardona, Andres; Guo, Yi; Ferrer, Carles

    2011-05-01

    Systems on Chip (SoC) are present in a wide range of applications. This diversity in addition with the quantity of critical variables involved in their design process becomes it as a great challenging topic. FPGAs have consolidated as a preferred device to develop and prototype SoCs, and consequently Partial Reconfiguration (PR) has gained importance in this approach. Through PR it is possible to have a section of the FPGA operating, while other section is disabled and partially reconfigured to provide new functionality. In this way hardware resources can be time-multiplexed and therefore it is possible to reduce size, cost and power. In this case we focus on the implementation of a SoC, in an FPGA-based board, with one of its peripherals being a reconfigurable partition (RP). Inside this RP different hardware modules defined as reconfigurable modules (RM) can be configured. Thus, the system is suitable to have different hardware configurations depending on the application needs and FPGA limitations, while the rest of the system continues working. To this end a MicroBlaze soft-core processor is used in the system design and a Virtex-5 FPGA board is utilized to its implementations. A remote sensing application is used to explore the capabilities of this approach. Identifying the section(s) of the application suitable of being time-shared it is possible to define the RMs to place inside the RP. Different configurations were carried out and measurements of area were taken. Preliminary results of the performance-area utilisation are presented to validate the improvement in flexibility and resource usage.

  20. Porosity and permeability determination of organic-rich Posidonia shales based on 3-D analyses by FIB-SEM microscopy

    Science.gov (United States)

    Grathoff, Georg H.; Peltz, Markus; Enzmann, Frieder; Kaufhold, Stephan

    2016-07-01

    The goal of this study is to better understand the porosity and permeability in shales to improve modelling fluid and gas flow related to shale diagenesis. Two samples (WIC and HAD) were investigated, both mid-Jurassic organic-rich Posidonia shales from Hils area, central Germany of different maturity (WIC R0 0.53 % and HAD R0 1.45 %). The method for image collection was focused ion beam (FIB) microscopy coupled with scanning electron microscopy (SEM). For image and data analysis Avizo and GeoDict was used. Porosity was calculated from segmented 3-D FIB based images and permeability was simulated by a Navier Stokes-Brinkman solver in the segmented images. Results show that the quantity and distribution of pore clusters and pores (≥ 40 nm) are similar. The largest pores are located within carbonates and clay minerals, whereas the smallest pores are within the matured organic matter. Orientation of the pores calculated as pore paths showed minor directional differences between the samples. Both samples have no continuous connectivity of pore clusters along the axes in the x, y, and z direction on the scale of 10 to 20 of micrometer, but do show connectivity on the micrometer scale. The volume of organic matter in the studied volume is representative of the total organic carbon (TOC) in the samples. Organic matter does show axis connectivity in the x, y, and z directions. With increasing maturity the porosity in organic matter increases from close to 0 to more than 5 %. These pores are small and in the large organic particles have little connection to the mineral matrix. Continuous pore size distributions are compared with mercury intrusion porosimetry (MIP) data. Differences between both methods are caused by resolution limits of the FIB-SEM and by the development of small pores during the maturation of the organic matter. Calculations show no permeability when only considering visible pores due to the lack of axis connectivity. Adding the organic matter with a

  1. The generic MESSy submodel TENDENCY (v1.0 for process-based analyses in Earth system models

    Directory of Open Access Journals (Sweden)

    R. Eichinger

    2014-07-01

    Full Text Available The tendencies of prognostic variables in Earth system models are usually only accessible, e.g. for output, as a sum over all physical, dynamical and chemical processes at the end of one time integration step. Information about the contribution of individual processes to the total tendency is lost, if no special precautions are implemented. The knowledge on individual contributions, however, can be of importance to track down specific mechanisms in the model system. We present the new MESSy (Modular Earth Submodel System infrastructure submodel TENDENCY and use it exemplarily within the EMAC (ECHAM/MESSy Atmospheric Chemistry model to trace process-based tendencies of prognostic variables. The main idea is the outsourcing of the tendency accounting for the state variables from the process operators (submodels to the TENDENCY submodel itself. In this way, a record of the tendencies of all process–prognostic variable pairs can be stored. The selection of these pairs can be specified by the user, tailor-made for the desired application, in order to minimise memory requirements. Moreover, a standard interface allows the access to the individual process tendencies by other submodels, e.g. for on-line diagnostics or for additional parameterisations, which depend on individual process tendencies. An optional closure test assures the correct treatment of tendency accounting in all submodels and thus serves to reduce the model's susceptibility. TENDENCY is independent of the time integration scheme and therefore the concept is applicable to other model systems as well. Test simulations with TENDENCY show an increase of computing time for the EMAC model (in a setup without atmospheric chemistry of 1.8 ± 1% due to the additional subroutine calls when using TENDENCY. Exemplary results reveal the dissolving mechanisms of the stratospheric tape recorder signal in height over time. The separation of the tendency of the specific humidity into the respective

  2. The generic MESSy submodel TENDENCY (v1.0) for process-based analyses in Earth system models

    Science.gov (United States)

    Eichinger, R.; Jöckel, P.

    2014-07-01

    The tendencies of prognostic variables in Earth system models are usually only accessible, e.g. for output, as a sum over all physical, dynamical and chemical processes at the end of one time integration step. Information about the contribution of individual processes to the total tendency is lost, if no special precautions are implemented. The knowledge on individual contributions, however, can be of importance to track down specific mechanisms in the model system. We present the new MESSy (Modular Earth Submodel System) infrastructure submodel TENDENCY and use it exemplarily within the EMAC (ECHAM/MESSy Atmospheric Chemistry) model to trace process-based tendencies of prognostic variables. The main idea is the outsourcing of the tendency accounting for the state variables from the process operators (submodels) to the TENDENCY submodel itself. In this way, a record of the tendencies of all process-prognostic variable pairs can be stored. The selection of these pairs can be specified by the user, tailor-made for the desired application, in order to minimise memory requirements. Moreover, a standard interface allows the access to the individual process tendencies by other submodels, e.g. for on-line diagnostics or for additional parameterisations, which depend on individual process tendencies. An optional closure test assures the correct treatment of tendency accounting in all submodels and thus serves to reduce the model's susceptibility. TENDENCY is independent of the time integration scheme and therefore the concept is applicable to other model systems as well. Test simulations with TENDENCY show an increase of computing time for the EMAC model (in a setup without atmospheric chemistry) of 1.8 ± 1% due to the additional subroutine calls when using TENDENCY. Exemplary results reveal the dissolving mechanisms of the stratospheric tape recorder signal in height over time. The separation of the tendency of the specific humidity into the respective processes (large

  3. LC-DAD-UV and LC-ESI-MS-based Analyses, Antioxidant Capacity, and Antimicrobial Activity of a Polar Fraction from Iryanthera ulei Leaves

    OpenAIRE

    Freddy A. Bernal; Luis E. Cuca-Suárez; Yamaguchi, Lydia F.; Ericsson D. Coy-Barrera

    2013-01-01

    LC-DAD-UV and LC-ESI-MS-based analyses were performed in order to chemically characterize a phenol-enriched fraction obtained from Iryanthera ulei leaves-derived ethanol extract. Eight glycosylated flavonoids, two free-flavonoids and two neolignans were detected to be part of its isopropyl acetate-soluble (iPS) fraction. Presence of afzelin 1 was confirmed by isolation. Total Phenolic (TPC) and Total Flavonoid Contents (TFC), Antioxidant Capacity (DPPH, ABTS • + , and FRAP methods), as well a...

  4. LC-DAD-UV and LC-ESI-MS-based Analyses, Antioxidant Capacity, and Antimicrobial Activity of a Polar Fraction from Iryanthera ulei Leaves

    Directory of Open Access Journals (Sweden)

    Freddy A. Bernal

    2013-03-01

    Full Text Available LC-DAD-UV and LC-ESI-MS-based analyses were performed in order to chemically characterize a phenol-enriched fraction obtained from Iryanthera ulei leaves-derived ethanol extract. Eight glycosylated flavonoids, two free-flavonoids and two neolignans were detected to be part of its isopropyl acetate-soluble (iPS fraction. Presence of afzelin 1 was confirmed by isolation. Total Phenolic (TPC and Total Flavonoid Contents (TFC, Antioxidant Capacity (DPPH, ABTS • + , and FRAP methods, as well as antimicrobial activity against five strains were determined.

  5. The CM SAF SSM/I-based total column water vapour climate data record: methods and evaluation against re-analyses and satellite

    Directory of Open Access Journals (Sweden)

    M. Schröder

    2012-09-01

    Full Text Available The "European Organisation for the Exploitation of Meteorological Satellites" (EUMETSAT Satellite Application Facility on Climate Monitoring (CM SAF aims at the provision and sound validation of well documented Climate Data Records (CDRs in sustained and operational environments. In this study, a total column water vapour (WVPA climatology from CM SAF is presented and inter-compared to water vapour data records from various data sources. Based on homogenised brightness temperatures from the Special Sensor Microwave Imager (SSM/I, a climatology of WVPA has been generated within the Hamburg Ocean-Atmosphere Fluxes and Parameters from Satellite (HOAPS framework. Within a research and operation transition activity the HOAPS data and operations capabilities have been successfully transferred to the CM SAF where the complete HOAPS data and processing schemes are hosted in an operational environment. An objective analysis for interpolation, kriging, has been developed and applied to the swath-based WVPA retrievals from the HOAPS data set. The resulting climatology consists of daily and monthly mean fields of WVPA over the global ice-free ocean. The temporal coverage ranges from July 1987 to August 2006. After a comparison to the precursor product the CM SAF SSM/I-based climatology has been comprehensively compared to different types of meteorological analyses from the European Centre for Medium-Range Weather Forecasts (ECMWF-ERA40, ERA INTERIM and operational analyses and from the Japan Meteorological Agency (JMA-JRA. This inter-comparison shows an overall good agreement between the climatology and the analyses, with daily absolute biases generally smaller than 2 kg m−2. The absolute bias to JRA and ERA INTERIM is typically smaller than 0.5 kg m−2. For the period 1991–2006, the root mean square error (RMSE to both reanalysis is approximately 2 kg m−2. As SSM/I WVPA and radiances are assimilated in JMA and all

  6. The CM SAF SSM/I-based total column water vapour climate data record: methods and evaluation against re-analyses and satellite

    Directory of Open Access Journals (Sweden)

    M. Schröder

    2013-03-01

    Full Text Available The European Organisation for the Exploitation of Meteorological Satellites (EUMETSAT Satellite Application Facility on Climate Monitoring (CM SAF aims at the provision and sound validation of well documented Climate Data Records (CDRs in sustained and operational environments. In this study, a total column water vapour path (WVPA climatology from CM SAF is presented and inter-compared to water vapour data records from various data sources. Based on homogenised brightness temperatures from the Special Sensor Microwave Imager (SSM/I, a climatology of WVPA has been generated within the Hamburg Ocean–Atmosphere Fluxes and Parameters from Satellite (HOAPS framework. Within a research and operation transition activity the HOAPS data and operation capabilities have been successfully transferred to the CM SAF where the complete HOAPS data and processing schemes are hosted in an operational environment. An objective analysis for interpolation, namely kriging, has been applied to the swath-based WVPA retrievals from the HOAPS data set. The resulting climatology consists of daily and monthly mean fields of WVPA over the global ice-free ocean. The temporal coverage ranges from July 1987 to August 2006. After a comparison to the precursor product the CM SAF SSM/I-based climatology has been comprehensively compared to different types of meteorological analyses from the European Centre for Medium-Range Weather Forecasts (ECMWF-ERA40, ERA INTERIM and operational analyses and from the Japan Meteorological Agency (JMA–JRA. This inter-comparison shows an overall good agreement between the climatology and the analyses, with daily absolute biases generally smaller than 2 kg m−2. The absolute value of the bias to JRA and ERA INTERIM is typically smaller than 0.5 kg m−2. For the period 1991–2006, the root mean square error (RMSE for both reanalyses is approximately 2 kg m−2. As SSM/I WVPA and radiances are assimilated into JMA and all ECMWF analyses and

  7. Biofunctionalized magnetic nanospheres-based cell sorting strategy for efficient isolation, detection and subtype analyses of heterogeneous circulating hepatocellular carcinoma cells.

    Science.gov (United States)

    Chen, Lan; Wu, Ling-Ling; Zhang, Zhi-Ling; Hu, Jiao; Tang, Man; Qi, Chu-Bo; Li, Na; Pang, Dai-Wen

    2016-11-15

    Hepatocellular carcinoma (HCC) is an awful threat to human health. Early-stage HCC may be detected by isolation of circulating tumor cells (CTCs) from peripheral blood samples, which is beneficial to the diagnosis and therapy. However, the extreme rarity and high heterogeneity of HCC CTCs have been restricting the relevant research. To achieve an efficient isolation, reliable detection and subtype analyses of heterogeneous HCC CTCs, herein, we present a cell sorting strategy based on anti-CD45 antibody-modified magnetic nanospheres. By this strategy, leukocyte depletion efficiency was up to 99.9% within 30min in mimic clinical samples, and the purity of the spiked HCC cells was improved 265-317-fold. Besides, the isolated HCC cells remained viable at 92.3% and could be directly recultured. Moreover, coupling the convenient, fast and effective cell sorting strategy with specific ICC identification via biomarkers AFP and GPC3, HCC CTCs were detectable in peripheral blood samples, showing the potential for HCC CTC detection in clinic. Notably, this immunomagnetic cell sorting strategy enabled isolating more heterogeneous HCC cells compared with the established EpCAM-based methods, and further achieved characterization of three different CTC subtypes from one clinical HCC blood sample, which may assist clinical HCC analyses such as prognosis or personalized treatment. PMID:27240010

  8. Discriminant analyses of stock prices by using multifractality of time series generated via multi-agent systems and interpolation based on wavelet transforms

    Science.gov (United States)

    Tokinaga, Shozo; Ikeda, Yoshikazu

    In investments, it is not easy to identify traders'behavior from stock prices, and agent systems may help us. This paper deals with discriminant analyses of stock prices using multifractality of time series generated via multi-agent systems and interpolation based on Wavelet Transforms. We assume five types of agents where a part of agents prefer forecast equations or production rules. Then, it is shown that the time series of artificial stock price reveals as a multifractal time series whose features are defined by the Hausedorff dimension D(h). As a result, we see the relationship between the reliability (reproducibility) of multifractality and D(h) under sufficient number of time series data. However, generally we need sufficient samples to estimate D(h), then we use interpolations of multifractal times series based on the Wavelet Transform.

  9. Analyses of cosmic ray induced-neutron based on spectrometers operated simultaneously at mid-latitude and Antarctica high-altitude stations during quiet solar activity

    Science.gov (United States)

    Hubert, G.

    2016-10-01

    In this paper are described a new neutron spectrometer which operate in the Concordia station (Antarctica, Dome C) since December 2015. This instrument complements a network including neutron spectrometers operating in the Pic-du-Midi and the Pico dos Dias. Thus, this work present an analysis of cosmic ray induced-neutron based on spectrometers operated simultaneously in the Pic-du-Midi and the Concordia stations during a quiet solar activity. The both high station platforms allow for investigating the long period dynamics to analyze the spectral variation and effects of local and seasonal changes, but also the short term dynamics during solar flare events. A first part is devoted to analyze the count rates, the spectrum and the neutron fluxes, implying cross-comparisons between data obtained in the both stations. In a second part, measurements analyses were reinforced by modeling based on simulations of atmospheric cascades according to primary spectra which only depend on the solar modulation potential.

  10. How and for whom does web-based acceptance and commitment therapy work? Mediation and moderation analyses of web-based ACT for depressive symptoms

    OpenAIRE

    Pots, Wendy T.M.; Trompetter, Hester R.; Schreurs, Karlein M. G.; Bohlmeijer, Ernst T.

    2016-01-01

    Background Acceptance and Commitment Therapy (ACT) has been demonstrated to be effective in reducing depressive symptoms. However, little is known how and for whom therapeutic change occurs, specifically in web-based interventions. This study focuses on the mediators, moderators and predictors of change during a web-based ACT intervention. Methods Data from 236 adults from the general population with mild to moderate depressive symptoms, randomized to either web-based ACT (n = 82) or one of t...

  11. Building-related symptoms among U.S. office workers and risks factors for moisture and contamination: Preliminary analyses of U.S. EPA BASE Data

    Energy Technology Data Exchange (ETDEWEB)

    Mendell, Mark J.; Cozen, Myrna

    2002-09-01

    The authors assessed relationships between health symptoms in office workers and risk factors related to moisture and contamination, using data collected from a representative sample of U.S. office buildings in the U.S. EPA BASE study. Methods: Analyses assessed associations between three types of weekly, workrelated symptoms-lower respiratory, mucous membrane, and neurologic-and risk factors for moisture or contamination in these office buildings. Multivariate logistic regression models were used to estimate the strength of associations for these risk factors as odds ratios (ORs) adjusted for personal-level potential confounding variables related to demographics, health, job, and workspace. A number of risk factors were associated (e.g., 95% confidence limits excluded 1.0) significantly with small to moderate increases in one or more symptom outcomes. Significantly elevated ORs for mucous membrane symptoms were associated with the following risk factors: presence of humidification system in good condition versus none (OR = 1.4); air handler inspection annually versus daily (OR = 1.6); current water damage in the building (OR = 1.2); and less than daily vacuuming in study space (OR = 1.2). Significantly elevated ORs for lower respiratory symptoms were associated with: air handler inspection annually versus daily (OR = 2.0); air handler inspection less than daily but at least semi-annually (OR=1.6); less than daily cleaning of offices (1.7); and less than daily vacuuming of the study space (OR = 1.4). Only two statistically significant risk factors for neurologic symptoms were identified: presence of any humidification system versus none (OR = 1.3); and less than daily vacuuming of the study space (OR = 1.3). Dirty cooling coils, dirty or poorly draining drain pans, and standing water near outdoor air intakes, evaluated by inspection, were not identified as risk factors in these analyses, despite predictions based on previous findings elsewhere, except that very

  12. Development of SI-traceable C-peptide certified reference material NMIJ CRM 6901-a using isotope-dilution mass spectrometry-based amino acid analyses.

    Science.gov (United States)

    Kinumi, Tomoya; Goto, Mari; Eyama, Sakae; Kato, Megumi; Kasama, Takeshi; Takatsu, Akiko

    2012-07-01

    A certified reference material (CRM) is a higher-order calibration material used to enable a traceable analysis. This paper describes the development of a C-peptide CRM (NMIJ CRM 6901-a) by the National Metrology Institute of Japan using two independent methods for amino acid analysis based on isotope-dilution mass spectrometry. C-peptide is a 31-mer peptide that is utilized for the evaluation of β-cell function in the pancreas in clinical testing. This CRM is a lyophilized synthetic peptide having the human C-peptide sequence, and contains deamidated and pyroglutamylated forms of C-peptide. By adding water (1.00 ± 0.01) g into the vial containing the CRM, the C-peptide solution in 10 mM phosphate buffer saline (pH 6.6) is reconstituted. We assigned two certified values that represent the concentrations of total C-peptide (mixture of C-peptide, deamidated C-peptide, and pyroglutamylated C-peptide) and C-peptide. The certified concentration of total C-peptide was determined by two amino acid analyses using pre-column derivatization liquid chromatography-mass spectrometry and hydrophilic chromatography-mass spectrometry following acid hydrolysis. The certified concentration of C-peptide was determined by multiplying the concentration of total C-peptide by the ratio of the relative area of C-peptide to that of the total C-peptide measured by liquid chromatography. The certified value of C-peptide (80.7 ± 5.0) mg/L represents the concentration of the specific entity of C-peptide; on the other hand, the certified value of total C-peptide, (81.7 ± 5.1) mg/L can be used for analyses that does not differentiate deamidated and pyroglutamylated C-peptide from C-peptide itself, such as amino acid analyses and immunochemical assays.

  13. Quantifying male-biased dispersal among social groups in the collared peccary (Pecari tajacu) using analyses based on mtDNA variation.

    Science.gov (United States)

    Cooper, J D; Vitalis, R; Waser, P M; Gopurenko, D; Hellgren, E C; Gabor, T M; DeWoody, J A

    2010-01-01

    Recent advances in the statistical analysis of microsatellite data permit calculation of sex-specific dispersal rates through sex- and age-specific comparisons of genetic variation. This approach, developed for the analysis of data derived from co-dominant autosomal markers, should be applicable to a sex-specific marker such as mitochondrial DNA. To test this premise, we amplified a 449 bp control region DNA sequence from the mitochondrial genome of the collared peccary (Pecari tajacu), and estimated intra-class correlations among herds sampled from three Texas populations. Analyses on data partitioned by breeding group showed a clear signal of male-biased dispersal; sex-specific fixation indices associated with genetic variation among social groups within populations yielded values for females (F(GP)=0.91), which were significantly larger than values for males (F(GP)=0.24; P=0.0015). The same general pattern emerged when the analyses were conducted on age classes (albeit nonsignificantly), as well as categories of individuals that were predicted a posteriori to be dispersers (adult males) and philopatric (adult females and all immatures). By extending a previously published methodology based on biparentally inherited markers to matrilineally inherited haploid data, we calculated sex-specific rates of contemporary dispersal among social groups within populations (m(male symbol)=0.37). These results support the idea that mitochondrial DNA haplotype frequency data can be used to estimate sex-specific instantaneous dispersal rates in a social species.

  14. Biomass feedstock analyses

    Energy Technology Data Exchange (ETDEWEB)

    Wilen, C.; Moilanen, A.; Kurkela, E. [VTT Energy, Espoo (Finland). Energy Production Technologies

    1996-12-31

    The overall objectives of the project `Feasibility of electricity production from biomass by pressurized gasification systems` within the EC Research Programme JOULE II were to evaluate the potential of advanced power production systems based on biomass gasification and to study the technical and economic feasibility of these new processes with different type of biomass feed stocks. This report was prepared as part of this R and D project. The objectives of this task were to perform fuel analyses of potential woody and herbaceous biomasses with specific regard to the gasification properties of the selected feed stocks. The analyses of 15 Scandinavian and European biomass feed stock included density, proximate and ultimate analyses, trace compounds, ash composition and fusion behaviour in oxidizing and reducing atmospheres. The wood-derived fuels, such as whole-tree chips, forest residues, bark and to some extent willow, can be expected to have good gasification properties. Difficulties caused by ash fusion and sintering in straw combustion and gasification are generally known. The ash and alkali metal contents of the European biomasses harvested in Italy resembled those of the Nordic straws, and it is expected that they behave to a great extent as straw in gasification. Any direct relation between the ash fusion behavior (determined according to the standard method) and, for instance, the alkali metal content was not found in the laboratory determinations. A more profound characterisation of the fuels would require gasification experiments in a thermobalance and a PDU (Process development Unit) rig. (orig.) (10 refs.)

  15. Biogeographic areas and transition zones of Latin America and the Caribbean islands based on panbiogeographic and cladistic analyses of the entomofauna.

    Science.gov (United States)

    Morrone, Juan J

    2006-01-01

    Track and cladistic biogeographic analyses based on insect taxa are used as a framework to interpret patterns of the Latin American and Caribbean entomofauna by identifying biogeographic areas on the basis of endemicity and arranging them hierarchically in a system of regions, subregions, dominions, and provinces. The Nearctic region, inhabited by Holarctic insect taxa, comprises five provinces: California, Baja California, Sonora, Mexican Plateau, and Tamaulipas. The Mexican transition zone comprises five provinces: Sierra Madre Occidental, Sierra Madre Oriental, Transmexican Volcanic Belt, Balsas Basin, and Sierra Madre del Sur. The Neotropical region, which harbors many insect taxa with close relatives in the tropical areas of the Old World, comprises four subregions: Caribbean, Amazonian, Chacoan, and Parana. The South American transition zone comprises five provinces: North Andean Paramo, Coastal Peruvian Desert, Puna, Atacama, Prepuna, and Monte. The Andean region, which harbors insect taxa with close relatives in the Austral continents, comprises three subregions: Central Chilean, Subantarctic, and Patagonian.

  16. Study of oxidation behaviour of Zr-based bulk amorphous alloy Zr65Cu17.5Ni10Al7.5 by thermogravimetric analyser

    Indian Academy of Sciences (India)

    A Dhawan; K Raetzke; F Faupel; S K Sharma

    2001-06-01

    The oxidation behaviour of Zr-based bulk amorphous alloy Zr65Cu17.5Ni10Al7.5 has been studied in air environment at various temperatures in the temperature range 591–684 K using a thermogravimetric analyser (TGA). The oxidation kinetics of the alloy in the amorphous phase obeys the parabolic rate law for oxidation in the temperature range 591–664 K. The values of the activation energy and pre-factor as calculated from the Arrhenius temperature dependence of the rate constants have been found to be 1.80 eV and 2.12 × 109 g cm–2.sec–1/2, respectively.

  17. Comparison of in vitro breast cancer visibility in analyser-based computed tomography with histopathology, mammography, computed tomography and magnetic resonance imaging.

    Science.gov (United States)

    Keyriläinen, Jani; Fernández, Manuel; Bravin, Alberto; Karjalainen-Lindsberg, Marja Liisa; Leidenius, Marjut; von Smitten, Karl; Tenhunen, Mikko; Kangasmäki, Aki; Sipilä, Petri; Nemoz, Christian; Virkkunen, Pekka; Suortti, Pekka

    2011-09-01

    High-resolution analyser-based X-ray imaging computed tomography (HR ABI-CT) findings on in vitro human breast cancer are compared with histopathology, mammography, computed tomography (CT) and magnetic resonance imaging. The HR ABI-CT images provided significantly better low-contrast visibility compared with the standard radiological images. Fine cancer structures indistinguishable and superimposed in mammograms were seen, and could be matched with the histopathological results. The mean glandular dose was less than 1 mGy in mammography and 12-13 mGy in CT and ABI-CT. The excellent visibility of in vitro breast cancer suggests that HR ABI-CT may have a valuable role in the future as an adjunct or even alternative to current breast diagnostics, when radiation dose is further decreased, and compact synchrotron radiation sources become available. PMID:21862846

  18. A new internet-based tool for reporting and analysing patient-reported outcomes and the feasibility of repeated data collection from patients with myeloproliferative neoplasms

    DEFF Research Database (Denmark)

    Brochmann, Nana; Zwisler, Ann-Dorthe; Kjerholt, Mette;

    2016-01-01

    PURPOSE: An Internet-based tool for reporting and analysing patient-reported outcomes (PROs) has been developed. The tool enables merging PROs with blood test results and allows for computation of treatment responses. Data may be visualized by graphical analysis and may be exported for downstream...... statistical processing. The aim of this study was to investigate, whether patients with myeloproliferative neoplasms (MPNs) were willing and able to use the tool and fill out questionnaires regularly. METHODS: Participants were recruited from the outpatient clinic at the Department of Haematology, Roskilde...... University Hospital, Denmark. Validated questionnaires that were used were European Organisation for Research and Treatment of Cancer Quality of Life Questionnaire-Core 30, Myeloproliferative Neoplasm Symptom Assessment Form, Brief Fatigue Inventory and Short Form 36 Health Survey. Questionnaires were filled...

  19. How and for whom does web-based acceptance and commitment therapy work? Mediation and moderation analyses of web-based ACT for depressive symptoms

    NARCIS (Netherlands)

    Pots, Wendy T.M.; Trompetter, Hester R.; Schreurs, Karlein M.G.; Bohlmeijer, Ernst T.

    2016-01-01

    Background Acceptance and Commitment Therapy (ACT) has been demonstrated to be effective in reducing depressive symptoms. However, little is known how and for whom therapeutic change occurs, specifically in web-based interventions. This study focuses on the mediators, moderators and predictors of ch

  20. Development of x-ray scintillator functioning also as an analyser grating used in grating-based x-ray differential phase contrast imaging

    Institute of Scientific and Technical Information of China (English)

    Lei Yao-Hu; Liu Xin; Guo Jin-Chuan; Zhao Zhi-Gang; Niu Han-Ben

    2011-01-01

    In order to push the grating-based phase contrast imaging system to be used in hospital and laboratories, this paper designs and develops a novel structure of x-ray scintillator functioning also as an analyser grating, which has been proposed for grating-based x-ray differential phase contrast imaging. According to this design, the scintillator should have a periodical structure in one dimension with the pitch equaling the period of self-image of the phase grating at the Talbot distance, where one half of the pitch is pixellated and is made of x-ray sensitive fluorescent material, such as CsI(TI), and the remaining part of the pitch is made of x-ray insensitive material, such as silicon. To realize the design, a deep pore array with a high aspect ratio and specially designed grating pattern are successfully manufactured on 5 inch silicon wafer by the photo-assisted electrochemical etching method. The related other problems, such as oxidation-caused geometrical distortion, the filling of CsI(Tl)into deep pores and the removal of inside bubbles, have been overcome.Its pixel size, depth and grating pitch are 3 μLmx7.5 gm, 150 μm and 3 μm, respectively. The microstructure of the scintillator has been examined microscopically and macroscopically by scanning electron microscope and x-ray resolution chart testing, respectively. The preliminary measurements have shown that the proposed scintillator, also functioning as an analyser grating, has been successfully designed and developed.

  1. Improving correlations between MODIS aerosol optical thickness and ground-based PM 2.5 observations through 3D spatial analyses

    Science.gov (United States)

    Hutchison, Keith D.; Faruqui, Shazia J.; Smith, Solar

    The Center for Space Research (CSR) continues to focus on developing methods to improve correlations between satellite-based aerosol optical thickness (AOT) values and ground-based, air pollution observations made at continuous ambient monitoring sites (CAMS) operated by the Texas commission on environmental quality (TCEQ). Strong correlations and improved understanding of the relationships between satellite and ground observations are needed to formulate reliable real-time predictions of air quality using data accessed from the moderate resolution imaging spectroradiometer (MODIS) at the CSR direct-broadcast ground station. In this paper, improvements in these correlations are demonstrated first as a result of the evolution in the MODIS retrieval algorithms. Further improvement is then shown using procedures that compensate for differences in horizontal spatial scales between the nominal 10-km MODIS AOT products and CAMS point measurements. Finally, airborne light detection and ranging (lidar) observations, collected during the Texas Air Quality Study of 2000, are used to examine aerosol profile concentrations, which may vary greatly between aerosol classes as a result of the sources, chemical composition, and meteorological conditions that govern transport processes. Further improvement in correlations is demonstrated with this limited dataset using insights into aerosol profile information inferred from the vertical motion vectors in a trajectory-based forecast model. Analyses are ongoing to verify these procedures on a variety of aerosol classes using data collected by the Cloud-Aerosol Lidar and Infrared Pathfinder Satellite (Calipso) lidar.

  2. A methodology for eliciting, representing, and analysing stakeholder knowledge for decision making on complex socio-ecological systems: from cognitive maps to agent-based models.

    Science.gov (United States)

    Elsawah, Sondoss; Guillaume, Joseph H A; Filatova, Tatiana; Rook, Josefine; Jakeman, Anthony J

    2015-03-15

    This paper aims to contribute to developing better ways for incorporating essential human elements in decision making processes for modelling of complex socio-ecological systems. It presents a step-wise methodology for integrating perceptions of stakeholders (qualitative) into formal simulation models (quantitative) with the ultimate goal of improving understanding and communication about decision making in complex socio-ecological systems. The methodology integrates cognitive mapping and agent based modelling. It cascades through a sequence of qualitative/soft and numerical methods comprising: (1) Interviews to elicit mental models; (2) Cognitive maps to represent and analyse individual and group mental models; (3) Time-sequence diagrams to chronologically structure the decision making process; (4) All-encompassing conceptual model of decision making, and (5) computational (in this case agent-based) Model. We apply the proposed methodology (labelled ICTAM) in a case study of viticulture irrigation in South Australia. Finally, we use strengths-weakness-opportunities-threats (SWOT) analysis to reflect on the methodology. Results show that the methodology leverages the use of cognitive mapping to capture the richness of decision making and mental models, and provides a combination of divergent and convergent analysis methods leading to the construction of an Agent Based Model.

  3. A methodology for eliciting, representing, and analysing stakeholder knowledge for decision making on complex socio-ecological systems: from cognitive maps to agent-based models.

    Science.gov (United States)

    Elsawah, Sondoss; Guillaume, Joseph H A; Filatova, Tatiana; Rook, Josefine; Jakeman, Anthony J

    2015-03-15

    This paper aims to contribute to developing better ways for incorporating essential human elements in decision making processes for modelling of complex socio-ecological systems. It presents a step-wise methodology for integrating perceptions of stakeholders (qualitative) into formal simulation models (quantitative) with the ultimate goal of improving understanding and communication about decision making in complex socio-ecological systems. The methodology integrates cognitive mapping and agent based modelling. It cascades through a sequence of qualitative/soft and numerical methods comprising: (1) Interviews to elicit mental models; (2) Cognitive maps to represent and analyse individual and group mental models; (3) Time-sequence diagrams to chronologically structure the decision making process; (4) All-encompassing conceptual model of decision making, and (5) computational (in this case agent-based) Model. We apply the proposed methodology (labelled ICTAM) in a case study of viticulture irrigation in South Australia. Finally, we use strengths-weakness-opportunities-threats (SWOT) analysis to reflect on the methodology. Results show that the methodology leverages the use of cognitive mapping to capture the richness of decision making and mental models, and provides a combination of divergent and convergent analysis methods leading to the construction of an Agent Based Model. PMID:25622296

  4. Design premises for a KBS-3V repository based on results from the safety assessment SR-Can and some subsequent analyses

    Energy Technology Data Exchange (ETDEWEB)

    2009-11-15

    deterioration over the assessment period. The basic approach for prescribing such margins is to consider whether the design assessed in SR-Can Main report was sufficient to result in safety. In case this design would imply too strict requirements, and in cases the SR-Can design was judged inadequate or not sufficiently analysed in the SR-Can report, some additional analyses have been undertaken to provide a better basis for setting the design premises. The resulting design premises constitute design constraints, which, if all fulfilled, form a good basis for demonstrating repository safety, according to the analyses in SR-Can and subsequent analyses. Some of the design premises may be modified in future stages of SKB's programme, as a result of analyses based on more detailed site data and a more developed understanding of processes of importance for long-term safety. Furthermore, a different balance between design requirements may result in the same level of safety. This report presents one technically reasonable balance, whereas future development and evaluations may result in other balances being deemed as more optimal. It should also be noted that in developing the reference design, the production reports should give credible evidence that the final product after construction and quality control fulfils the specifications of the reference design. To cover uncertainties in production and quality control that may be difficult to quantify in detail at the present design stage, the developer of the reference design need usually consider a margin to the conditions that would verify the design premises, but whether there is a need for such margins lies outside the scope of the current document. The term 'withstand' is used in this document in descriptions of load cases on repository components. The statement that a component withstands a particular load means that it upholds its related safety function when exposed to the load in question. For example, if the

  5. Effect of a novel motion correction algorithm (SSF) on the image quality of coronary CTA with intermediate heart rates: Segment-based and vessel-based analyses

    Energy Technology Data Exchange (ETDEWEB)

    Li, Qianwen, E-mail: qianwen18@126.com; Li, Pengyu, E-mail: lipyu818@gmail.com; Su, Zhuangzhi, E-mail: suzhuangzhi@xwh.ccmu.edu.cn; Yao, Xinyu, E-mail: 314985151@qq.com; Wang, Yan, E-mail: wy19851121@126.com; Wang, Chen, E-mail: fskwangchen@gmail.com; Du, Xiangying, E-mail: duxying_xw@163.com; Li, Kuncheng, E-mail: kuncheng.li@gmail.com

    2014-11-15

    Highlights: • SSF provided better image quality than single-sector and bi-sector reconstruction among the intermediate heart rates (65–75 bpm). • Evidence for the application of prospective ECG-triggered coronary CTA with SSF onto an expanded heart rate range. • Information about the inconsistent effectiveness of SSF among the segments of coronary artery. - Abstract: Purpose: To evaluate the effect of SnapShot Freeze (SSF) reconstruction at an intermediate heart-rate (HR) range (65–75 bpm) and compare this method with single-sector reconstruction and bi-sector reconstruction on segmental and vessel bases in retrospective coronary computed tomography angiography (CCTA). Materials and methods: Retrospective electrocardiogram-gated CCTA was performed on 37 consecutive patients with HR between 65 and 75 bpm using a 64-row CT scanner. Retrospective single-sector reconstruction, bi-sector reconstruction, and SSF were performed for each patient. Multi-phase single-sector reconstruction was performed to select the optimal phase. SSF and bi-sector images were also reconstructed at the optimal phase. The images were interpreted in an intent-to-diagnose fashion by two experienced readers using a 5-point scale, with 3 points as diagnostically acceptable. Image quality among the three reconstruction groups were compared on per-patient, per-vessel, and per-segment bases. Results: The average HR of the enrolled patients was 69.4 ± 2.7 bpm. A total of 111 vessels and 481 coronary segments were assessed. SSF provided significantly higher interpretability of the coronary segments than bi-sector reconstructions. The qualified and excellent rates of SSF (97.9% and 82.3%) were significantly higher than those of single-sector (92.9% and 66.3%) and bi-sector (90.9% and 64.7%) reconstructions. The image quality score (IQS) using SSF was also significantly higher than those of single-sector and bi-sector reconstructions both on per-patient and per-vessel bases. On per

  6. Effect of a novel motion correction algorithm (SSF) on the image quality of coronary CTA with intermediate heart rates: Segment-based and vessel-based analyses

    International Nuclear Information System (INIS)

    Highlights: • SSF provided better image quality than single-sector and bi-sector reconstruction among the intermediate heart rates (65–75 bpm). • Evidence for the application of prospective ECG-triggered coronary CTA with SSF onto an expanded heart rate range. • Information about the inconsistent effectiveness of SSF among the segments of coronary artery. - Abstract: Purpose: To evaluate the effect of SnapShot Freeze (SSF) reconstruction at an intermediate heart-rate (HR) range (65–75 bpm) and compare this method with single-sector reconstruction and bi-sector reconstruction on segmental and vessel bases in retrospective coronary computed tomography angiography (CCTA). Materials and methods: Retrospective electrocardiogram-gated CCTA was performed on 37 consecutive patients with HR between 65 and 75 bpm using a 64-row CT scanner. Retrospective single-sector reconstruction, bi-sector reconstruction, and SSF were performed for each patient. Multi-phase single-sector reconstruction was performed to select the optimal phase. SSF and bi-sector images were also reconstructed at the optimal phase. The images were interpreted in an intent-to-diagnose fashion by two experienced readers using a 5-point scale, with 3 points as diagnostically acceptable. Image quality among the three reconstruction groups were compared on per-patient, per-vessel, and per-segment bases. Results: The average HR of the enrolled patients was 69.4 ± 2.7 bpm. A total of 111 vessels and 481 coronary segments were assessed. SSF provided significantly higher interpretability of the coronary segments than bi-sector reconstructions. The qualified and excellent rates of SSF (97.9% and 82.3%) were significantly higher than those of single-sector (92.9% and 66.3%) and bi-sector (90.9% and 64.7%) reconstructions. The image quality score (IQS) using SSF was also significantly higher than those of single-sector and bi-sector reconstructions both on per-patient and per-vessel bases. On per

  7. Analysis of a Heavy Rainfall Event over Beijing During 21-22 July 2012 Based on High Resolution Model Analyses and Forecasts

    Institute of Scientific and Technical Information of China (English)

    YUAN Huiling; JIANG Xiaoman; XUE Ming; CHEN Xi; TAN Xiaoguang

    2014-01-01

    The heaviest rainfall over 61 yr hit Beijing during 21-22 July 2012. Characterized by great rainfall amount and intensity, wide range, and high impact, this record-breaking heavy rainfall caused dozens of deaths and extensive damage. Despite favorable synoptic conditions, operational forecasts underestimated the precipitation amount and were late at predicting the rainfall start time. To gain a better understanding of the performance of mesoscale models, verification of high-resolution forecasts and analyses from the WRF-based BJ-RUCv2.0 model with a horizontal grid spacing of 3 km is carried out. The results show that water vapor is very rich and a quasi-linear precipitation system produces a rather concentrated rain area. Moreover, model forecasts are first verified statistically using equitable threat score and BIAS score. The BJ-RUCv2.0 forecasts under-predict the rainfall with southwestward displacement error and time delay of the extreme precipitation. Further quantitative analysis based on the contiguous rain area method indicates that major errors for total precipitation (> 5 mm h-1) are due to inaccurate precipitation location and pattern, while forecast errors for heavy rainfall (> 20 mm h-1) mainly come from precipitation intensity. Finally, the possible causes for the poor model performance are discussed through diagnosing large-scale circulation and physical parameters (water vapor flux and instability conditions) of the BJ-RUCv2.0 model output.

  8. Waste dumps rehabilitation measures based on physico-chemical analyses in Zăghid mining area (Sălaj County, Romania

    Directory of Open Access Journals (Sweden)

    Ildiko M. Varga

    2011-08-01

    Full Text Available The present study deals with an abandoned coal mine from Zăghid area, North-WesternTransylvanian Basin (Sălaj County. The mining activity was stopped in 2005, without any attempt ofecological rehabilitation of the mined area and especially of the waste dumps left behind. The proposedrehabilitation models are based on some physical-chemical analyses of soil and waste samples (e.g. pH,EC, Salinity, humidity, porosity, density, plasticity, organic substances, mineralogical composition, heavymetals. Erosion map has been drawn based on the determined mineralogical composition (accordingSTAS 1913/5-85 – using Galton curve of tailings and the soil type. The values obtained for moisture andplasticity have been used to determine the ideal general inclination angle of the landfill systems in thestudied perimeter. Through chemical analysis, heavy metals like Ni and Cu have been identified, as themain pollution factors for surface and underground water. Therefore, the concentration of heavy metalsin the waters from Zăghid area is high in the water bodies, which are formed on waste dumps, but alsoin the mine water. This analysis is useful in establishing the actual state of the waste dumps and theircontent and the negative effects, which exercise on the environment in order to select the rehabilitationmodel for the waste dumps from Zăghid mining area. The main measures consist in: waste dumpsleveling, soil remediation, perennial plants culture and acid mine water decontamination.

  9. Characterization and novel analyses of acute stress response patterns in a population-based cohort of young adults: influence of gender, smoking, and BMI.

    Science.gov (United States)

    Herbison, Carly E; Henley, David; Marsh, Julie; Atkinson, Helen; Newnham, John P; Matthews, Stephen G; Lye, Stephen J; Pennell, Craig E

    2016-01-01

    Dysregulation of the biological stress response system has been implicated in the development of psychological, metabolic, and cardiovascular disease. Whilst changes in stress response are often quantified as an increase or decrease in cortisol levels, three different patterns of stress response have been reported in the literature for the Trier Social Stress Test (TSST) (reactive-responders (RR), anticipatory-responders (AR) and non-responders (NR)). However, these have never been systematically analyzed in a large population-based cohort. The aims of this study were to examine factors that contribute to TSST variation (gender, oral contraceptive use, menstrual cycle phase, smoking, and BMI) using traditional methods and novel analyses of stress response patterns. We analyzed the acute stress response of 798, 18-year-old participants from a community-based cohort using the TSST. Plasma adrenocorticotrophic hormone, plasma cortisol, and salivary cortisol levels were quantified. RR, AR, and NR patterns comprised 56.6%, 26.2%, and 17.2% of the cohort, respectively. Smokers were more likely to be NR than (RR or AR; adjusted, p stress-response patterns, in addition to other parameters vary with gender, smoking, and BMI. The distribution of these patterns has the potential to vary with adult health and disease and may represent a biomarker for future investigation.

  10. 基于查询模型的专家检索方法分析%ANALYSING QUERY MODEL-BASED EXPERT SEARCH METHOD

    Institute of Scientific and Technical Information of China (English)

    饶建农; 孙宇轩

    2013-01-01

    After analysing the language model-based expert search method, we propose an expert search approach for query-based modelling. In the method a set of new expert sorting system is established by using query expansion technique and terminology generation probability. Preliminary experimental evaluation has been carried out on enterprise track topics organised by the international Text Retrieval Conference, the results show that this method can effectively improve the retrieval accuracy of expert search tasks.%在对基于语言模型的专家检索方法进行分析后,提出查询式建模的专家检索方法.该方法通过运用查询扩展技术和术语生成概率建立一套新的专家排序体系.根据对国际文本检索会议组织的企业追踪专题进行初步实验评估,结果表明,这种方法能够有效地提高专家检索任务的检索准确度.

  11. Network class superposition analyses.

    Science.gov (United States)

    Pearson, Carl A B; Zeng, Chen; Simha, Rahul

    2013-01-01

    Networks are often used to understand a whole system by modeling the interactions among its pieces. Examples include biomolecules in a cell interacting to provide some primary function, or species in an environment forming a stable community. However, these interactions are often unknown; instead, the pieces' dynamic states are known, and network structure must be inferred. Because observed function may be explained by many different networks (e.g., ≈ 10(30) for the yeast cell cycle process), considering dynamics beyond this primary function means picking a single network or suitable sample: measuring over all networks exhibiting the primary function is computationally infeasible. We circumvent that obstacle by calculating the network class ensemble. We represent the ensemble by a stochastic matrix T, which is a transition-by-transition superposition of the system dynamics for each member of the class. We present concrete results for T derived from boolean time series dynamics on networks obeying the Strong Inhibition rule, by applying T to several traditional questions about network dynamics. We show that the distribution of the number of point attractors can be accurately estimated with T. We show how to generate Derrida plots based on T. We show that T-based Shannon entropy outperforms other methods at selecting experiments to further narrow the network structure. We also outline an experimental test of predictions based on T. We motivate all of these results in terms of a popular molecular biology boolean network model for the yeast cell cycle, but the methods and analyses we introduce are general. We conclude with open questions for T, for example, application to other models, computational considerations when scaling up to larger systems, and other potential analyses. PMID:23565141

  12. MEPHISTO: Performance tests of a novel synchrotron imaging photoelectron spectromicroscope

    Science.gov (United States)

    De Stasio, Gelsomina; Capozi, M.; Lorusso, G. F.; Baudat, P. A.; Droubay, T. C.; Perfetti, P.; Margaritondo, G.; Tonner, B. P.

    1998-05-01

    We discuss the scheme and test performances of this recently commissioned system in its final configuration. The tests show that the improvements in the electron optics system with respect to other instruments in the same class made it possible to reach lateral resolutions in the 50 nm range. They also demonstrate rather good spectromicroscopy and spectroscopy performances, reliability and flexibility of operation.

  13. EEG analyses with SOBI.

    Energy Technology Data Exchange (ETDEWEB)

    Glickman, Matthew R.; Tang, Akaysha (University of New Mexico, Albuquerque, NM)

    2009-02-01

    The motivating vision behind Sandia's MENTOR/PAL LDRD project has been that of systems which use real-time psychophysiological data to support and enhance human performance, both individually and of groups. Relevant and significant psychophysiological data being a necessary prerequisite to such systems, this LDRD has focused on identifying and refining such signals. The project has focused in particular on EEG (electroencephalogram) data as a promising candidate signal because it (potentially) provides a broad window on brain activity with relatively low cost and logistical constraints. We report here on two analyses performed on EEG data collected in this project using the SOBI (Second Order Blind Identification) algorithm to identify two independent sources of brain activity: one in the frontal lobe and one in the occipital. The first study looks at directional influences between the two components, while the second study looks at inferring gender based upon the frontal component.

  14. Time point-based integrative analyses of deep-transcriptome identify four signal pathways in blastemal regeneration of zebrafish lower jaw.

    Science.gov (United States)

    Zhang, Hui; Wang, Xuelong; Lyu, Kailun; Gao, Siqi; Wang, Guan; Fan, Chunxin; Zhang, Xin A; Yan, Jizhou

    2015-03-01

    There has been growing interest in applying tissue engineering to stem cell-based regeneration therapies. We have previously reported that zebrafish can faithfully regenerate complicated tissue structures through blastemal cell type conversions and tissue reorganization. To unveil the regenerative factors and engineering arts of blastemal regeneration, we conducted transcriptomal analyses at four time points corresponding to preamputation, re-epitheliation, blastemal formation, and respecification. By combining the hierarchical gene ontology term network, the DAVID annotation system, and Euclidean distance clustering, we identified four signaling pathways: foxi1-foxo1b-pou3f1, pax3a-mant3a-col11/col2, pou5f1-cdx4-kdrl, and isl1-wnt11 PCP-sox9a. Results from immunohistochemical staining and promoter-driven transgenic fish suggest that these pathways, respectively, define wound epidermis reconstitution, cell type conversions, blastemal angiogenesis/vasculogenesis, and cartilage matrix-orientation. Foxi1 morpholino-knockdown caused expansions of Foxo1b- and Pax3a-expression in the basal layer-blastemal junction region. Moreover, foxi1 morphants displayed increased sox9a and hoxa2b transcripts in the embryonic pharyngeal arches. Thus, a Foxi1 signal switch is required to establish correct tissue patterns, including re-epitheliation and blastema formation. This study provides novel insight into a blastema regeneration strategy devised by epithelial cell transdifferentiation, blood vessel engineering, and cartilage matrix deposition. PMID:25420467

  15. Associations of indoor carbon dioxide concentrations and environmental susceptibilities with mucous membrane and lower respiratory building related symptoms in the BASE study: Analyses of the 100 building dataset

    Energy Technology Data Exchange (ETDEWEB)

    Erdmann, Christine A.; Apte, Michael G.

    2003-09-01

    Using the US EPA 100 office-building BASE Study dataset, they conducted multivariate logistic regression analyses to quantify the relationship between indoor CO{sub 2} concentrations (dCO{sub 2}) and mucous membrane (MM) and lower respiratory system (LResp) building related symptoms, adjusting for age, sex, smoking status, presence of carpet in workspace, thermal exposure, relative humidity, and a marker for entrained automobile exhaust. In addition, they tested the hypothesis that certain environmentally-mediated health conditions (e.g., allergies and asthma) confer increased susceptibility to building related symptoms within office buildings. Adjusted odds ratios (ORs) for statistically significant, dose-dependent associations (p < 0.05) for dry eyes, sore throat, nose/sinus congestion, and wheeze symptoms with 100 ppm increases in dCO{sub 2} ranged from 1.1 to 1.2. These results suggest that increases in the ventilation rates per person among typical office buildings will, on average, reduce the prevalence of several building related symptoms by up to 70%, even when these buildings meet the existing ASHRAE ventilation standards for office buildings. Building occupants with certain environmentally-mediated health conditions are more likely to experience building related symptoms than those without these conditions (statistically significant ORs ranged from 2 to 11).

  16. Association between forgone care and household income among the elderly in five Western European countries – analyses based on survey data from the SHARE-study

    Directory of Open Access Journals (Sweden)

    Stirbu Irina

    2009-03-01

    Full Text Available Abstract Background Studies on the association between access to health care and household income have rarely included an assessment of 'forgone care', but this indicator could add to our understanding of the inverse care law. We hypothesize that reporting forgone care is more prevalent in low income groups. Methods The study is based on the 'Survey of Health, Ageing and Retirement in Europe (SHARE', focusing on the non-institutionalized population aged 50 years or older. Data are included from France, Germany, Greece, Italy and Sweden. The dependent variable is assessed by the following question: During the last twelve months, did you forgo any types of care because of the costs you would have to pay, or because this care was not available or not easily accessible? The main independent variable is household income, adjusted for household size and split into quintiles, calculating the quintile limits for each country separately. Information on age, sex, self assessed health and chronic disease is included as well. Logistic regression models were used for the multivariate analyses. Results The overall level of forgone care differs considerably between the five countries (e.g. about 10 percent in Greece and 6 percent in Sweden. Low income groups report forgone care more often than high income groups. This association can also be found in analyses restricted to the subsample of persons with chronic disease. Associations between forgone care and income are particularly strong in Germany and Greece. Taking the example of Germany, forgone care in the lowest income quintile is 1.98 times (95% CI: 1.08–3.63 as high as in the highest income quintile. Conclusion Forgone care should be reduced even if it is not justified by an 'objective' need for health care, as it could be an independent stressor in its own right, and as patient satisfaction is a strong predictor of compliance. These efforts should focus on population groups with particularly high

  17. Simultaneous detection of eight swine reproductive and respiratory pathogens using a novel GeXP analyser-based multiplex PCR assay.

    Science.gov (United States)

    Zhang, Minxiu; Xie, Zhixun; Xie, Liji; Deng, Xianwen; Xie, Zhiqin; Luo, Sisi; Liu, Jiabo; Pang, Yaoshan; Khan, Mazhar I

    2015-11-01

    A new high-throughput GenomeLab Gene Expression Profiler (GeXP) analyser-based multiplex PCR assay was developed for the detection of eight reproductive and respiratory pathogens in swine. The reproductive and respiratory pathogens include North American porcine reproductive and respiratory syndrome virus (PRRSV-NA), classical swine fever virus (CSFV), porcine circovirus 2 (PCV-2), swine influenza virus (SIV) (including H1 and H3 subtypes), porcine parvovirus (PPV), pseudorabies virus (PRV) and Japanese encephalitis virus (JEV). Nine pairs of specific chimeric primers were designed and used to initiate PCRs, and one pair of universal primers was used for subsequent PCR cycles. The specificity of the GeXP assay was examined using positive controls for each virus. The sensitivity was evaluated using serial ten-fold dilutions of in vitro-transcribed RNA from all of the RNA viruses and plasmids from DNA viruses. The GeXP assay was further evaluated using 114 clinical specimens and was compared with real-time PCR/single RT-PCR methods. The specificity of the GeXP assay for each pathogen was examined using single cDNA/DNA template. Specific amplification peaks of the reproductive and respiratory pathogens were observed on the GeXP analyser. The minimum copies per reaction detected for each virus by the GeXP assay were as follows: 1000 copies/μl for PRV; 100 copies/μl for CSFV, JEV, PCV-2 and PPV; and 10 copies/μl for SIV-H1, SIV-H3 and PRRSV-NA. Analysis of 114 clinical samples using the GeXP assay demonstrated that the GeXP assay had comparable detection to real-time PCR/single RT-PCR. This study demonstrated that the GeXP assay is a new method with high sensitivity and specificity for the identification of these swine reproductive and respiratory pathogens. The GeXP assay may be adopted for molecular epidemiological surveys of these reproductive and respiratory pathogens in swine populations. PMID:26259690

  18. Evaluation of impact factors on PM2.5 based on long-term chemical components analyses in the megacity Beijing, China.

    Science.gov (United States)

    Chen, Yuan; Schleicher, Nina; Cen, Kuang; Liu, Xiuli; Yu, Yang; Zibat, Volker; Dietze, Volker; Fricker, Mathieu; Kaminski, Uwe; Chen, Yizhen; Chai, Fahe; Norra, Stefan

    2016-07-01

    Nine years of sampling and analyses of fine particles (PM2.5) were performed in Beijing from 2005 to 2013. Twenty-seven chemical elements and black carbon (BC) in PM2.5 were analyzed in order to study chemical characteristics and temporal distribution of Beijing aerosols. Principle component analysis defined different types of elemental sources, based on which, the influences of a variety of anthropogenic activities including governmental intervention measures and natural sources on air quality were evaluated. For the first time, Ga is used as a tracer element for heating activities mainly using coal in Beijing, due to its correlation with BC and coal combustion, as well as its concentration variation between the heating- and non-heating periods. The traffic restrictions effectively reduced emissions of relevant heavy metals such as As, Cd, Sn and Sb. The expected long-term effectiveness of the steel smelters relocation was not observed due to the nearby relocation with increased capacity. Firework display during every Chinese spring festival season and special events such as the Olympic Games resulted in several times higher concentrations of K, Sr and Ba than other days and thus they were proposed as tracers for firework display. The impacts of all these factors were quantified and evaluated. Sand dust or dust storms induced higher concentrations of geogenic elements in PM2.5 compared to non-dust days. Sustainable mitigation measures, such as traffic restrictions, are necessary to be continued and improved to obtain more "blue sky" days in the future.

  19. Evaluation of impact factors on PM2.5 based on long-term chemical components analyses in the megacity Beijing, China.

    Science.gov (United States)

    Chen, Yuan; Schleicher, Nina; Cen, Kuang; Liu, Xiuli; Yu, Yang; Zibat, Volker; Dietze, Volker; Fricker, Mathieu; Kaminski, Uwe; Chen, Yizhen; Chai, Fahe; Norra, Stefan

    2016-07-01

    Nine years of sampling and analyses of fine particles (PM2.5) were performed in Beijing from 2005 to 2013. Twenty-seven chemical elements and black carbon (BC) in PM2.5 were analyzed in order to study chemical characteristics and temporal distribution of Beijing aerosols. Principle component analysis defined different types of elemental sources, based on which, the influences of a variety of anthropogenic activities including governmental intervention measures and natural sources on air quality were evaluated. For the first time, Ga is used as a tracer element for heating activities mainly using coal in Beijing, due to its correlation with BC and coal combustion, as well as its concentration variation between the heating- and non-heating periods. The traffic restrictions effectively reduced emissions of relevant heavy metals such as As, Cd, Sn and Sb. The expected long-term effectiveness of the steel smelters relocation was not observed due to the nearby relocation with increased capacity. Firework display during every Chinese spring festival season and special events such as the Olympic Games resulted in several times higher concentrations of K, Sr and Ba than other days and thus they were proposed as tracers for firework display. The impacts of all these factors were quantified and evaluated. Sand dust or dust storms induced higher concentrations of geogenic elements in PM2.5 compared to non-dust days. Sustainable mitigation measures, such as traffic restrictions, are necessary to be continued and improved to obtain more "blue sky" days in the future. PMID:27115848

  20. Unique honey bee (Apis mellifera hive component-based communities as detected by a hybrid of phospholipid fatty-acid and fatty-acid methyl ester analyses.

    Directory of Open Access Journals (Sweden)

    Kirk J Grubbs

    Full Text Available Microbial communities (microbiomes are associated with almost all metazoans, including the honey bee Apis mellifera. Honey bees are social insects, maintaining complex hive systems composed of a variety of integral components including bees, comb, propolis, honey, and stored pollen. Given that the different components within hives can be physically separated and are nutritionally variable, we hypothesize that unique microbial communities may occur within the different microenvironments of honey bee colonies. To explore this hypothesis and to provide further insights into the microbiome of honey bees, we use a hybrid of fatty acid methyl ester (FAME and phospholipid-derived fatty acid (PLFA analysis to produce broad, lipid-based microbial community profiles of stored pollen, adults, pupae, honey, empty comb, and propolis for 11 honey bee hives. Averaging component lipid profiles by hive, we show that, in decreasing order, lipid markers representing fungi, Gram-negative bacteria, and Gram-positive bacteria have the highest relative abundances within honey bee colonies. Our lipid profiles reveal the presence of viable microbial communities in each of the six hive components sampled, with overall microbial community richness varying from lowest to highest in honey, comb, pupae, pollen, adults and propolis, respectively. Finally, microbial community lipid profiles were more similar when compared by component than by hive, location, or sampling year. Specifically, we found that individual hive components typically exhibited several dominant lipids and that these dominant lipids differ between components. Principal component and two-way clustering analyses both support significant grouping of lipids by hive component. Our findings indicate that in addition to the microbial communities present in individual workers, honey bee hives have resident microbial communities associated with different colony components.

  1. IPD-Work consortium: pre-defined meta-analyses of individual-participant data strengthen evidence base for a link between psychosocial factors and health.

    Science.gov (United States)

    Kivimäki, Mika; Singh-Manoux, Archana; Virtanen, Marianna; Ferrie, Jane E; Batty, G David; Rugulies, Reiner

    2015-05-01

    Established in 2008 and comprising over 60 researchers, the IPD-Work (individual-participant data meta-analysis in working populations) consortium is a collaborative research project that uses pre-defined meta-analyses of individual-participant data from multiple cohort studies representing a range of countries. The aim of the consortium is to estimate reliably the associations of work-related psychosocial factors with chronic diseases, disability, and mortality. Our findings are highly cited by the occupational health, epidemiology, and clinical medicine research community. However, some of the IPD-Work's findings have also generated disagreement as they challenge the importance of job strain as a major target for coronary heart disease (CHD) prevention, this is reflected in the critical discussion paper by Choi et al (1). In this invited reply to Choi et al, we aim to (i) describe how IPD-Work seeks to advance research on associations between work-related psychosocial risk factors and health; (ii) demonstrate as unfounded Choi et al's assertion that IPD-Work has underestimated associations between job strain and health endpoints; these include the dichotomous measurement of job strain, potential underestimation of the population attributable risk (PAR) of job strain for CHD, and policy implications arising from the findings of the IPD-Work consortium; and (iii) outline general principles for designing evidence-based policy and prevention from good-quality evidence, including future directions for research on psychosocial factors at work and health. In addition, we highlight some problems with Choi et al's approach. PMID:25654401

  2. Revisiting the phylogeny of Bombacoideae (Malvaceae): Novel relationships, morphologically cohesive clades, and a new tribal classification based on multilocus phylogenetic analyses.

    Science.gov (United States)

    Carvalho-Sobrinho, Jefferson G; Alverson, William S; Alcantara, Suzana; Queiroz, Luciano P; Mota, Aline C; Baum, David A

    2016-08-01

    Bombacoideae (Malvaceae) is a clade of deciduous trees with a marked dominance in many forests, especially in the Neotropics. The historical lack of a well-resolved phylogenetic framework for Bombacoideae hinders studies in this ecologically important group. We reexamined phylogenetic relationships in this clade based on a matrix of 6465 nuclear (ETS, ITS) and plastid (matK, trnL-trnF, trnS-trnG) DNA characters. We used maximum parsimony, maximum likelihood, and Bayesian inference to infer relationships among 108 species (∼70% of the total number of known species). We analyzed the evolution of selected morphological traits: trunk or branch prickles, calyx shape, endocarp type, seed shape, and seed number per fruit, using ML reconstructions of their ancestral states to identify possible synapomorphies for major clades. Novel phylogenetic relationships emerged from our analyses, including three major lineages marked by fruit or seed traits: the winged-seed clade (Bernoullia, Gyranthera, and Huberodendron), the spongy endocarp clade (Adansonia, Aguiaria, Catostemma, Cavanillesia, and Scleronema), and the Kapok clade (Bombax, Ceiba, Eriotheca, Neobuchia, Pachira, Pseudobombax, Rhodognaphalon, and Spirotheca). The Kapok clade, the most diverse lineage of the subfamily, includes sister relationships (i) between Pseudobombax and "Pochota fendleri" a historically incertae sedis taxon, and (ii) between the Paleotropical genera Bombax and Rhodognaphalon, implying just two bombacoid dispersals to the Old World, the other one involving Adansonia. This new phylogenetic framework offers new insights and a promising avenue for further evolutionary studies. In view of this information, we present a new tribal classification of the subfamily, accompanied by an identification key. PMID:27154210

  3. The impact of ancestral heath management on soils and landscapes. A reconstruction based on paleoecological analyses of soil records in the middle and southeast Netherlands.

    Science.gov (United States)

    van Mourik, Jan; Doorenbosch, Marieke

    2016-04-01

    The evolution of heath lands during the Holocene has been registered in various soil records . Paleoecological analyses of these records enable to reconstruct the changing economic and cultural management of heaths and the consequences for landscape and soils. Heaths are characteristic components of cultural landscape mosaics on sandy soils in the Netherlands. The natural habitat of heather species was moorland. At first, natural events like forest fires and storms caused small-scale forest degradation, in addition on the forest degradation accelerated due to cultural activities like forest grazing, wood cutting and shifting cultivation. Heather plants invaded on degraded forest soils and heaths developed. People learned to use the heaths for economic and cultural purposes. The impact of the heath management on landscape and soils was registered in soil records of barrows, drift sand sequences and plaggic Anthrosols. Based on pollen diagrams of such records we could reconstruct that heaths were developed and used for cattle grazing before the Bronze Age. During the Late Neolithic, the Bronze Age and Iron Age, people created the barrow landscape on the ancestral heaths. After the Iron Age people probably continued with cattle grazing on the heaths and plaggic agriculture until the Early Middle Ages. After 1000 AD two events affected the heaths. At first deforestation for the sale of wood resulted in the first regional extension of sand drifting and heath degradation. After that the introduction of the deep stable economy and heath sods digging resulted in acceleration of the rise of plaggic horizons, severe heath degradation and the second extension of sand drifting. At the end of the 19th century the heath lost its economic value due to the introduction of chemical fertilizers. The heaths were transformed into 'new' arable fields and forests and due to deep ploughing most soil archives were destroyed. Since 1980 AD, the remaining relicts of the ancestral heaths are

  4. Method for evaluating an extended Fault Tree to analyse the dependability of complex systems:application to a satellite-based railway system

    OpenAIRE

    NGUYEN, Khanh; Beugin, Julie; MARAIS, Juliette

    2015-01-01

    Evaluating dependability of complex systems requires the evolution of the system states over time to be analysed. The problem is to develop modelling approaches that take adequately the evolution of the different operating and failed states of the system components into account. The Fault Tree (FT) is a well-known method that efficiently analyse the failure causes of a system and serves for reliability and availability evaluations. As FT are not adapted to dynamic systems with repairable mult...

  5. Sproglig Metode og Analyse

    DEFF Research Database (Denmark)

    le Fevre Jakobsen, Bjarne

    Publikationen indeholder øvematerialer, tekster, powerpointpræsentationer og handouts til undervisningsfaget Sproglig Metode og Analyse på BA og tilvalg i Dansk/Nordisk 2010-2011......Publikationen indeholder øvematerialer, tekster, powerpointpræsentationer og handouts til undervisningsfaget Sproglig Metode og Analyse på BA og tilvalg i Dansk/Nordisk 2010-2011...

  6. The Potential to Forgo Social Welfare Gains through Overreliance on Cost Effectiveness/Cost Utility Analyses in the Evidence Base for Public Health

    Directory of Open Access Journals (Sweden)

    D. R. Cohen

    2009-01-01

    Full Text Available Economic evaluations of clinical treatments most commonly take the form of cost effectiveness or cost utility analyses. This is appropriate since the main—sometimes the only—benefit of such interventions is increased health. The majority of economic evaluations in public health, however, have also been assessed using these techniques when arguably cost benefit analyses would in many cases have been more appropriate, given its ability to take account of nonhealth benefits as well. An examination of the nonhealth benefits from a sample of studies featured in a recent review of economic evaluations in public health illustrates how overfocusing on cost effectiveness/cost utility analyses may lead to forgoing potential social welfare gains from programmes in public health. Prior to evaluation, programmes should be considered in terms of the potential importance of nonhealth benefits and where these are considerable would be better evaluated by more inclusive economic evaluation techniques.

  7. The impact of ancestral heath management on soils and landscapes: a reconstruction based on paleoecological analyses of soil records in the central and southeastern Netherlands

    Science.gov (United States)

    Doorenbosch, Marieke; van Mourik, Jan M.

    2016-07-01

    The evolution of heathlands during the Holocene has been registered in various soil records. Paleoecological analyses of these records enable reconstruction of the changing economic and cultural management of heaths and the consequences for landscape and soils. Heaths are characteristic components of cultural landscape mosaics on sandy soils in the Netherlands. The natural habitat of heather species was moorland. At first, natural events like forest fires and storms caused small-scale forest degradation; in addition on that, the forest degradation accelerated due to cultural activities like forest grazing, wood cutting, and shifting cultivation. Heather plants invaded degraded forest soils, and heaths developed. People learned to use the heaths for economic and cultural purposes. The impact of the heath management on landscape and soils was registered in soil records of barrows, drift sand sequences, and plaggic Anthrosols. Based on pollen diagrams of such records we could reconstruct that heaths were developed and used for cattle grazing before the Bronze Age. During the late Neolithic, the Bronze Age, and Iron Age, people created the barrow landscape on the ancestral heaths. After the Iron Age, people probably continued with cattle grazing on the heaths and plaggic agriculture until the early Middle Ages. Severe forest degradation by the production of charcoal for melting iron during the Iron Age till the 6th-7th century and during the 11th-13th century for the trade of wood resulted in extensive sand drifting, a threat to the valuable heaths. The introduction of the deep, stable economy and heath sods digging in the course of the 18th century resulted in acceleration of the rise of plaggic horizons, severe heath degradation, and again extension of sand drifting. At the end of the 19th century heath lost its economic value due to the introduction of chemical fertilizers. The heaths were transformed into "new" arable fields and forests, and due to deep ploughing

  8. Aquifer-System Compaction and Land Subsidence: Measurements, Analyses, and Simulations-the Holly Site, Edwards Air Force Base, Antelope Valley, California

    Science.gov (United States)

    Sneed, Michelle; Galloway, Devin L.

    2000-01-01

    Land subsidence resulting from ground-water-level declines has long been recognized as a problem in Antelope Valley, California. At Edwards Air Force Base (EAFB), ground-water extractions have caused more than 150 feet of water-level decline, resulting in nearly 4 feet of subsidence. Differential land subsidence has caused sinklike depressions and earth fissures and has accelerated erosion of the playa lakebed surface of Rogers Lake at EAFB, adversely affecting the runways on the lakebed which are used for landing aircraft such as the space shuttles. Since 1990, about 0.4 foot of aquifer-system compaction has been measured at a deep (840 feet) borehole extensometer (Holly site) at EAFB. More than 7 years of paired ground-water-level and aquifer-system compaction measurements made at the Holly site were analyzed for this study. Annually, seasonal water-level fluctuations correspond to steplike variations in aquifer-system compaction; summer water-level drawdowns are associated with larger rates of compaction, and winter water-level recoveries are associated with smaller rates of compaction. The absence of aquifer-system expansion during recovery is consistent with the delayed drainage and resultant delayed, or residual, compaction of thick aquitards. A numerical one-dimensional MODFLOW model of aquitard drainage was used to refine estimates of aquifer-system hydraulic parameters that control compaction and to predict potential future compaction at the Holly site. The analyses and simulations of aquifer-system compaction are based on established theories of aquitard drainage. Historical ground-water-level and land-subsidence data collected near the Holly site were used to constrain simulations of aquifer-system compaction and land subsidence at the site for the period 1908?90, and ground-water-level and aquifer- system compaction measurements collected at the Holly site were used to constrain the model for the period 1990?97. Model results indicate that two thick

  9. Analysing usefulness and applicability of EO-based long-term vegetation and rainfall trends for assessment of land degradation/recovery in the African Sahel

    Science.gov (United States)

    Fensholt, R.; Rasmussen, K.; Huber, S.; Kaspersen, P.

    2011-12-01

    subsequently calculating the residuals (the difference between observed ΣNDVI and ΣNDVI as predicted by the rainfall) is another method to distinguish rainfall-related variations from human-induced land degradation. This approach is driven by the logic that a deviation in NDVI from the value predicted from rainfall is caused by human influence in dryland areas. This method presumes a strong, linear relationship between ΣNDVI and rainfall. However, if an area is characterised by human induced land degradation over time the strength of this relationship becomes weaker (depending on the timing and severeness of degradation) causing the prediction of NDVI and consequently the trend analysis to be less reliable. Here we study the importance of the specific method applied in EO-based land degradation monitoring by analysing the sensitivity of the analysis output to the EO data input on vegetation productivity. It is shown that widely different conclusions about land degradation in Sahel may be drawn from the analysis, depending on the way aboveground net primary productivity (ANPP) is assessed from satellite imagery.

  10. The role of safety analyses in site selection. Some personal observations based on the experience from the Swiss site selection process

    Energy Technology Data Exchange (ETDEWEB)

    Zuidema, Piet [Nagra, Wettingen (Switzerland)

    2015-07-01

    In Switzerland, the site selection process according to the ''Sectoral Plan for Deep Geological Repositories'' (BFE 2008) is underway since 2008. This process takes place in three stages. In stage 1 geological siting regions (six for the L/ILW repository and three for the HLW repository) have been identified, in stage 2 sites for the surface facilities have been identified for all siting regions in close co-operation with the sting regions and a narrowing down of the number of siting regions based on geological criteria will take place. In stage 3 the sites for a general license application are selected and the general license applications will be submitted which eventually will lead to the siting decision for both repository types. In the Swiss site selection process, safety has the highest priority. Many factors affect safety and thus a whole range of safety-related issues are considered in the identification and screening of siting possibilities. Besides dose calculations a range of quantitative and qualitative issues are considered. Dose calculations are performed in all three stages of the site selection process. In stage 1 generic safety calculations were made to develop criteria to be used for the identification of potential siting regions. In stage 2, dose calculations are made for comparing the different siting regions according to a procedure prescribed in detail by the regulator. Combined with qualitative evaluations this will lead to a narrowing down of the number of siting regions to at least two siting regions for each repository type. In stage 3 full safety cases will be prepared as part of the documentation for the general license applications. Besides the dose calculations, many other issues related to safety are analyzed in a quantitative and qualitative manner. These consider the 13 criteria defined in the Sectoral Plan and the corresponding indicators. The features analyzed cover the following broad themes: efficiency of

  11. Streptococcal taxonomy based on genome sequence analyses [v1; ref status: indexed, http://f1000r.es/o1

    Directory of Open Access Journals (Sweden)

    Cristiane C Thompson

    2013-03-01

    Full Text Available The identification of the clinically relevant viridans streptococci group, at species level, is still problematic. The aim of this study was to extract taxonomic information from the complete genome sequences of 67 streptococci, comprising 19 species, by means of genomic analyses, multilocus sequence analysis (MLSA, average amino acid identity (AAI, genomic signatures, genome-to-genome distances (GGD and codon usage bias. We then attempted to determine the usefulness of these genomic tools for species identification in streptococci. Our results showed that MLSA, AAI and GGD analyses are robust markers to identify streptococci at the species level, for instance, S. pneumoniae, S. mitis, and S. oralis. A Streptococcus species can be defined as a group of strains that share ≥ 95% DNA similarity in MLSA and AAI, and > 70% DNA identity in GGD. This approach allows an advanced understanding of bacterial diversity.

  12. Genetic stock structure of frigate tuna (Auxis thazard) along Indian coast based on PCR-RFLP analyses of mtDNA D-Loop region

    Digital Repository Service at National Institute of Oceanography (India)

    GirishKumar; Kunal, S.P.; Menezes, M.R.

    will be essential for making conservation strategy and enhancement program for sustainable use. For the sustainable use of a fishery, a clear understanding of the stock structure of the exploited species is needed. Knowledge of stock structure is critical... (spawning season, fecundity), growth rates and genetic analyses. Among these, the genetic approach to fish stock assessment is comparatively more successful as it is cost effective and results can be obtained with high accuracy. Mitochondrial DNA (mt...

  13. Identification of Distinct Breast Cancer Stem Cell Populations Based on Single-Cell Analyses of Functionally Enriched Stem and Progenitor Pools

    OpenAIRE

    Nina Akrap; Daniel Andersson; Eva Bom; Pernilla Gregersson; Anders Ståhlberg; Göran Landberg

    2016-01-01

    Summary The identification of breast cancer cell subpopulations featuring truly malignant stem cell qualities is a challenge due to the complexity of the disease and lack of general markers. By combining extensive single-cell gene expression profiling with three functional strategies for cancer stem cell enrichment including anchorage-independent culture, hypoxia, and analyses of low-proliferative, label-retaining cells derived from mammospheres, we identified distinct stem cell clusters in b...

  14. Towards the Development of Clinical Measures for Spinal Cord Injury Based on the International Classification of Functioning, Disability and Health With Rasch Analyses

    DEFF Research Database (Denmark)

    Ballert, Carolina S; Stucki, Gerold; Biering-Sørensen, Fin;

    2014-01-01

    in specialized centers within 15 countries from 2006 through 2008. SETTING: Secondary data analysis. PARTICIPANTS: Adults (N=1048) with SCI from the early postacute and long-term living context. INTERVENTIONS: Not applicable. MAIN OUTCOME MEASURES: Two unidimensional Rasch analyses: one for the ICF categories...... the ICF categories relevant to SCI fit a Rasch model taking into consideration the dimensionality found in previous investigations, local item dependencies, or differential item functioning. DESIGN: All second-level ICF categories collected in the Development of ICF Core Sets for SCI project...

  15. Age at Menarche, Level of Education, Parity and the Risk of Hysterectomy: A Systematic Review and Meta-Analyses of Population-Based Observational Studies.

    Directory of Open Access Journals (Sweden)

    Louise F Wilson

    Full Text Available Although rates have declined, hysterectomy is still a frequent gynaecological procedure. To date, there has been no systematic quantification of the relationships between early/mid-life exposures and hysterectomy. We performed a systematic review and meta-analyses to quantify the associations between age at menarche, education level, parity and hysterectomy.Eligible studies were identified by searches in PubMed and Embase through March 2015. Study-specific estimates were summarised using random effects meta-analysis. Heterogeneity was explored using sub-group analysis and meta-regression.Thirty-two study populations were identified for inclusion in at least one meta-analysis. Each year older at menarche was associated with lower risk of hysterectomy-summary hazard ratio 0.86 (95% confidence interval: 0.78, 0.95; I2 = 0%; summary odds ratio 0.88 (95% confidence interval: 0.82, 0.94; I2 = 61%. Low education levels conferred a higher risk of hysterectomy in the lowest versus highest level meta-analysis (summary hazard ratio 1.87 (95% confidence interval: 1.25, 2.80; I2 = 86%, summary odds ratio 1.51 (95% confidence interval: 1.35, 1.69; I2 = 90% and dose-response meta-analysis (summary odds ratio 1.17 (95% confidence interval: 1.12, 1.23; I2 = 85% per each level lower of education. Sub-group analysis showed that the birth cohort category of study participants, the reference category used for level of education, the year the included article was published, quality of the study (as assessed by the authors and control for the key variables accounted for the high heterogeneity between studies in the education level meta-analyses. In the meta-analyses of studies of parity and hysterectomy the results were not statistically significant.The present meta-analyses suggest that the early life factors of age at menarche and lower education level are associated with hysterectomy, although this evidence should be interpreted with some caution due to variance

  16. Report sensory analyses veal

    OpenAIRE

    Veldman, M.; Schelvis-Smit, A.A.M.

    2005-01-01

    On behalf of a client of Animal Sciences Group, different varieties of veal were analyzed by both instrumental and sensory analyses. The sensory evaluation was performed with a sensory analytical panel in the period of 13th of May and 31st of May, 2005. The three varieties of veal were: young bull, pink veal and white veal. The sensory descriptive analyses show that the three groups Young bulls, pink veal and white veal, differ significantly in red colour for the raw meat as well as the baked...

  17. The phylogenetic position of the Loimoidae Price, 1936 (Monogenoidea: Monocotylidea) based on analyses of partial rDNA sequences and morphological data.

    Science.gov (United States)

    Boeger, W A; Kritsky, D C; Domingues, M V; Bueno-Silva, M

    2014-06-01

    Phylogenetic analyses of partial sequences of 18S and 28S rDNA of some monogenoids, including monocotylids and a specimen of Loimosina sp. collected from a hammerhead shark off Brazil, indicated that the Loimoidae (as represented by the specimen of Loimosina sp.) represents an in-group taxon of the Monocotylidae. In all analyses, the Loimoidae fell within a major monocotylid clade including species of the Heterocotylinae, Decacotylinae, and Monocotylinae. The Loimoidae formed a terminal clade with two heterocotyline species, Troglocephalus rhinobatidis and Neoheterocotyle rhinobatis, for which it represented the sister taxon. The following morphological characters supported the clade comprising the Loimoidae, Heterocotylinae, Decacotylinae and Monocotylinae: single vagina present, presence of a narrow deep anchor root, and presence of a marginal haptoral membrane. The presence of cephalic pits was identified as a putative synapomorphy for the clade (Loimoidae (T. rhinobatidis, N. rhinobatis)). Although rDNA sequence data support the rejection of the Loimoidae and incorporating its species into the Monocotylidae, this action was not recommended pending a full phylogenetic analysis of morphological data. PMID:24491371

  18. New ORIGEN2 libraries based on JENDL-4.0 and their validation for long-lived fission products by post irradiation examination analyses of LWR spent fuels

    International Nuclear Information System (INIS)

    Accurate inventory estimation of long-lived fission products (LLFPs) in LWR spent fuels is important for the quality management of high-level radioactive vitrified wastes and for long-term safety assessment of the vitrified wastes. In Japan, ORIGEN2 has been widely used to estimate the spent fuel compositions of light water reactors. However, equipped library data in the original ORIGEN2 code are old and are not validated enough for LLFPs, such as 79Se, 99Tc, 126Sn and 135Cs, because available post irradiation examination (PIE) data are limited for these nuclides, which have difficulties in radiochemical analyses compared with other fission products or actinides. For more accurate inventory estimation of the spent fuel composition, new ORIGEN2 libraries are developed from the latest Japanese nuclear data library JENDL-4.0 for neutron-induced cross sections and fission yields, and from other recent nuclear data libraries for decay half-lives, and so on. The new libraries are validated by PIE analyses of the sample fuels irradiated in Cooper (BWR), Calvert-Cliffs-1 (PWR) and H. B. Robinson-2 (PWR) in USA, and of a sample fuel in the recent Japanese PIE data from Ohi-1 (PWR). As a result, it was found that the new library gives good results for the inventory estimation of LLFPs. (author)

  19. World Health Organization Quality-of-Life Scale (WHOQOL-BREF: Analyses Of Their Item Response Theory Properties Based On The Graded Responses Model

    Directory of Open Access Journals (Sweden)

    Shahrum Vahedi

    2010-11-01

    Full Text Available "nObjective: This study has used Item Response Theory (IRT to examine the psychometric properties of Health-Related Quality-of-Life. "nMethod: This investigation is a descriptive- analytic study. Subjects were 370 undergraduate students of nursing and midwifery who were selected from Tabriz University of Medical Sciences. All participants were asked to complete the Farsi version of WHOQOL-BREF. Samejima's graded response model was used for the analyses. "nResults: The results revealed that the discrimination parameters for all items in the four scales were low to moderate. The threshold parameters showed adequate representation of the relevant traits from low to the mean trait level. With the exception of 15, 18, 24 and 26 items, all other items showed low item information function values, and thus relatively high reliability from low trait levels to moderate levels. "nConclusions: The results of this study indicate that although there was general support for the psychometric properties of the WHOQOL-BREF from an IRT perspective, this measure can be further improved. IRT analyses provided useful measurement information and demonstrated to be a better methodological approach for enhancing our knowledge of the functionality of WHOQOL-BREF.

  20. World Health Organization Quality-of-Life Scale (WHOQOL-BREF): Analyses of Their Item Response Theory Properties Based on the Graded Responses Model

    Science.gov (United States)

    2010-01-01

    Objective This study has used Item Response Theory (IRT) to examine the psychometric properties of Health-Related Quality-of-Life. Method This investigation is a descriptive- analytic study. Subjects were 370 undergraduate students of nursing and midwifery who were selected from Tabriz University of Medical Sciences. All participants were asked to complete the Farsi version of WHOQOL-BREF. Samejima's graded response model was used for the analyses. Results The results revealed that the discrimination parameters for all items in the four scales were low to moderate. The threshold parameters showed adequate representation of the relevant traits from low to the mean trait level. With the exception of 15, 18, 24 and 26 items, all other items showed low item information function values, and thus relatively high reliability from low trait levels to moderate levels. Conclusions The results of this study indicate that although there was general support for the psychometric properties of the WHOQOL-BREF from an IRT perspective, this measure can be further improved. IRT analyses provided useful measurement information and demonstrated to be a better methodological approach for enhancing our knowledge of the functionality of WHOQOL-BREF. PMID:22952508

  1. Meta-analyses

    NARCIS (Netherlands)

    Hendriks, M.A.; Luyten, J.W.; Scheerens, J.; Sleegers, P.J.C.; Scheerens, J.

    2014-01-01

    In this chapter results of a research synthesis and quantitative meta-analyses of three facets of time effects in education are presented, namely time at school during regular lesson hours, homework, and extended learning time. The number of studies for these three facets of time that could be used

  2. Probabilistic safety analyses (PSA)

    International Nuclear Information System (INIS)

    The guide shows how the probabilistic safety analyses (PSA) are used in the design, construction and operation of light water reactor plants in order for their part to ensure that the safety of the plant is good enough in all plant operational states

  3. Wavelet Analyses and Applications

    Science.gov (United States)

    Bordeianu, Cristian C.; Landau, Rubin H.; Paez, Manuel J.

    2009-01-01

    It is shown how a modern extension of Fourier analysis known as wavelet analysis is applied to signals containing multiscale information. First, a continuous wavelet transform is used to analyse the spectrum of a nonstationary signal (one whose form changes in time). The spectral analysis of such a signal gives the strength of the signal in each…

  4. Report sensory analyses veal

    NARCIS (Netherlands)

    Veldman, M.; Schelvis-Smit, A.A.M.

    2005-01-01

    On behalf of a client of Animal Sciences Group, different varieties of veal were analyzed by both instrumental and sensory analyses. The sensory evaluation was performed with a sensory analytical panel in the period of 13th of May and 31st of May, 2005. The three varieties of veal were: young bull,

  5. Peak-flow frequency analyses and results based on data through water year 2011 for selected streamflow-gaging stations in or near Montana: Chapter C in Montana StreamStats

    Science.gov (United States)

    Sando, Steven K.; McCarthy, Peter M.; Dutton, DeAnn M.

    2016-04-05

    Chapter C of this Scientific Investigations Report documents results from a study by the U.S. Geological Survey, in cooperation with the Montana Department of Transportation and the Montana Department of Natural Resources, to provide an update of statewide peak-flow frequency analyses and results for Montana. The purpose of this report chapter is to present peak-flow frequency analyses and results for 725 streamflow-gaging stations in or near Montana based on data through water year 2011. The 725 streamflow-gaging stations included in this study represent nearly all streamflowgaging stations in Montana (plus some from adjacent states or Canadian Provinces) that have at least 10 years of peak-flow records through water year 2011. For 29 of the 725 streamflow-gaging stations, peak-flow frequency analyses and results are reported for both unregulated and regulated conditions. Thus, peak-flow frequency analyses and results are reported for a total of 754 analyses. Estimates of peak-flow magnitudes for 66.7-, 50-, 42.9-, 20-, 10-, 4-, 2-, 1-, 0.5-, and 0.2-percent annual exceedance probabilities are reported. These annual exceedance probabilities correspond to 1.5-, 2-, 2.33-, 5-, 10-, 25-, 50-, 100-, 200-, and 500-year recurrence intervals.

  6. Head and neck tumours: combined MRI assessment based on IVIM and TIC analyses for the differentiation of tumors of different histological types

    Energy Technology Data Exchange (ETDEWEB)

    Sumi, Misa; Nakamura, Takashi [Nagasaki University School of Dentistry, Department of Radiology and Cancer Biology, Nagasaki (Japan)

    2014-01-15

    We evaluated the combined use of intravoxel incoherent motion (IVIM) and time-signal intensity curve (TIC) analyses to diagnose head and neck tumours. We compared perfusion-related parameters (PP) and molecular diffusion values (D) determined from IVIM theory and TIC profiles among 92 tumours with different histologies. IVIM parameters (f and D values) and TIC profiles in combination were distinct among the different types of head and neck tumours, including squamous cell carcinomas (SCCs), lymphomas, malignant salivary gland tumours, Warthin's tumours, pleomorphic adenomas and schwannomas. A multiparametric approach using both IVIM parameters and TIC profiles differentiated between benign and malignant tumours with 97 % accuracy and diagnosed different tumour types with 89 % accuracy. Combined use of IVIM parameters and TIC profiles has high efficacy in diagnosing head and neck tumours. (orig.)

  7. Localisation of nursery areas based on comparative analyses of the horizontal and vertical distribution patterns of juvenile Baltic cod (Gadus morhua)

    DEFF Research Database (Denmark)

    Nielsen, J. Rasmus; Lundgren, Bo; Kristensen, Kasper;

    2013-01-01

    Knowledge of the spatial distribution of juvenile cod is essential for obtaining precise recruitment data to conduct sustainable management of the eastern and western Baltic cod stocks. In this study, the horizontal and vertical distribution and density patterns of settled juvenile 0- and 1-group...... and acoustic research surveys. Horizontal distribution maps for the 2001–2010 cohorts of juvenile cod are further generated by applying a statistical log-Gaussian Cox process model to the standard trawl survey data. The analyses indicate size-dependent horizontal and distinct vertical and diurnal distribution...... patterns related to the seabed topography, water layer depth, and the presence of hydrographic frontal zones (pycnoclines) as well as intraspecific patterns in relation to the presence of adult cod. The extent of the nursery areas also depends on the cod year class strength. Juvenile cod (≥3 cm...

  8. Towards High-Quality Reflective Learning amongst Law Undergraduate Students: Analysing Students' Reflective Journals during a Problem-Based Learning Course

    Science.gov (United States)

    Rué, Joan; Font, Antoni; Cebrián, Gisela

    2013-01-01

    There is wide agreement that problem-based learning is a key strategy to promote individual abilities for "learning how to learn". This paper presents the main contributions that reflective journals and the problem-based learning approach can make to foster professional knowledge and quality learning in higher education. Thirty-six…

  9. Molecular- and cultivation-based analyses of microbial communities in oil field water and in microcosms amended with nitrate to control H{sub 2}S production

    Energy Technology Data Exchange (ETDEWEB)

    Kumaraswamy, Raji; Ebert, Sara; Fedorak, Phillip M.; Foght, Julia M. [Alberta Univ., Edmonton, AB (Canada). Biological Sciences; Gray, Murray R. [Alberta Univ., Edmonton, AB (Canada). Chemical and Materials Engineering

    2011-03-15

    Nitrate injection into oil fields is an alternative to biocide addition for controlling sulfide production ('souring') caused by sulfate-reducing bacteria (SRB). This study examined the suitability of several cultivation-dependent and cultivation-independent methods to assess potential microbial activities (sulfidogenesis and nitrate reduction) and the impact of nitrate amendment on oil field microbiota. Microcosms containing produced waters from two Western Canadian oil fields exhibited sulfidogenesis that was inhibited by nitrate amendment. Most probable number (MPN) and fluorescent in situ hybridization (FISH) analyses of uncultivated produced waters showed low cell numbers ({<=}10{sup 3} MPN/ml) dominated by SRB (>95% relative abundance). MPN analysis also detected nitrate-reducing sulfide-oxidizing bacteria (NRSOB) and heterotrophic nitrate-reducing bacteria (HNRB) at numbers too low to be detected by FISH or denaturing gradient gel electrophoresis (DGGE). In microcosms containing produced water fortified with sulfate, near-stoichiometric concentrations of sulfide were produced. FISH analyses of the microcosms after 55 days of incubation revealed that Gammaproteobacteria increased from undetectable levels to 5-20% abundance, resulting in a decreased proportion of Deltaproteobacteria (50-60% abundance). DGGE analysis confirmed the presence of Delta- and Gammaproteobacteria and also detected Bacteroidetes. When sulfate-fortified produced waters were amended with nitrate, sulfidogenesis was inhibited and Deltaproteobacteria decreased to levels undetectable by FISH, with a concomitant increase in Gammaproteobacteria from below detection to 50-60% abundance. DGGE analysis of these microcosms yielded sequences of Gamma- and Epsilonproteobacteria related to presumptive HNRB and NRSOB (Halomonas, Marinobacterium, Marinobacter, Pseudomonas and Arcobacter), thus supporting chemical data indicating that nitrate-reducing bacteria out-compete SRB when nitrate is

  10. Determinants of the over-anticoagulation response during warfarin initiation therapy in Asian patients based on population pharmacokinetic-pharmacodynamic analyses.

    Directory of Open Access Journals (Sweden)

    Minami Ohara

    Full Text Available To clarify pharmacokinetic-pharmacodynamic (PK-PD factors associated with the over-anticoagulation response in Asians during warfarin induction therapy, population PK-PD analyses were conducted in an attempt to predict the time-courses of the plasma S-warfarin concentration, Cp(S, and coagulation and anti-coagulation (INR responses. In 99 Chinese patients we analyzed the relationships between dose and Cp(S to estimate the clearance of S-warfarin, CL(S, and that between Cp(S and the normal prothrombin concentration (NPT as a coagulation marker for estimation of IC50. We also analyzed the non-linear relationship between NPT inhibition and the increase in INR to derive the non-linear index λ. Population analyses accurately predicted the time-courses of Cp(S, NPT and INR. Multivariate analysis showed that CYP2C9*3 mutation and body surface area were predictors of CL(S, that VKORC1 and CYP4F2 polymorphisms were predictors of IC50, and that baseline NPT was a predictor of λ. CL(S and λ were significantly lower in patients with INR≥4 than in those with INR<4 (190 mL/h vs 265 mL/h, P<0.01 and 3.2 vs 3.7, P<0.01, respectively. Finally, logistic regression analysis revealed that CL(S, ALT and hypertension contributed significantly to INR≥4. All these results indicate that factors associated with the reduced metabolic activity of warfarin represented by CL(S, might be critical determinants of the over-anticoagulation response during warfarin initiation in Asians.ClinicalTrials.gov NCT02065388.

  11. Possible future HERA analyses

    CERN Document Server

    Geiser, Achim

    2015-01-01

    A variety of possible future analyses of HERA data in the context of the HERA data preservation programme is collected, motivated, and commented. The focus is placed on possible future analyses of the existing $ep$ collider data and their physics scope. Comparisons to the original scope of the HERA programme are made, and cross references to topics also covered by other participants of the workshop are given. This includes topics on QCD, proton structure, diffraction, jets, hadronic final states, heavy flavours, electroweak physics, and the application of related theory and phenomenology topics like NNLO QCD calculations, low-x related models, nonperturbative QCD aspects, and electroweak radiative corrections. Synergies with other collider programmes are also addressed. In summary, the range of physics topics which can still be uniquely covered using the existing data is very broad and of considerable physics interest, often matching the interest of results from colliders currently in operation. Due to well-e...

  12. Analysing performance through value creation

    Directory of Open Access Journals (Sweden)

    Adrian TRIFAN

    2015-12-01

    Full Text Available This paper draws a parallel between measuring financial performance in 2 variants: the first one using data offered by accounting, which lays emphasis on maximizing profit, and the second one which aims to create value. The traditional approach to performance is based on some indicators from accounting data: ROI, ROE, EPS. The traditional management, based on analysing the data from accounting, has shown its limits, and a new approach is needed, based on creating value. The evaluation of value based performance tries to avoid the errors due to accounting data, by using other specific indicators: EVA, MVA, TSR, CVA. The main objective is shifted from maximizing the income to maximizing the value created for shareholders. The theoretical part is accompanied by a practical analysis regarding the creation of value and an analysis of the main indicators which evaluate this concept.

  13. Statistisk analyse med SPSS

    OpenAIRE

    Linnerud, Kristin; Oklevik, Ove; Slettvold, Harald

    2004-01-01

    Dette notatet har sitt utspring i forelesninger og undervisning for 3.års studenter i økonomi og administrasjon ved høgskolen i Sogn og Fjordane. Notatet er særlig lagt opp mot undervisningen i SPSS i de to kursene ”OR 685 Marknadsanalyse og merkevarestrategi” og ”BD 616 Økonomistyring og analyse med programvare”.

  14. Possible future HERA analyses

    Energy Technology Data Exchange (ETDEWEB)

    Geiser, Achim

    2015-12-15

    A variety of possible future analyses of HERA data in the context of the HERA data preservation programme is collected, motivated, and commented. The focus is placed on possible future analyses of the existing ep collider data and their physics scope. Comparisons to the original scope of the HERA pro- gramme are made, and cross references to topics also covered by other participants of the workshop are given. This includes topics on QCD, proton structure, diffraction, jets, hadronic final states, heavy flavours, electroweak physics, and the application of related theory and phenomenology topics like NNLO QCD calculations, low-x related models, nonperturbative QCD aspects, and electroweak radiative corrections. Synergies with other collider programmes are also addressed. In summary, the range of physics topics which can still be uniquely covered using the existing data is very broad and of considerable physics interest, often matching the interest of results from colliders currently in operation. Due to well-established data and MC sets, calibrations, and analysis procedures the manpower and expertise needed for a particular analysis is often very much smaller than that needed for an ongoing experiment. Since centrally funded manpower to carry out such analyses is not available any longer, this contribution not only targets experienced self-funded experimentalists, but also theorists and master-level students who might wish to carry out such an analysis.

  15. Identification of Distinct Breast Cancer Stem Cell Populations Based on Single-Cell Analyses of Functionally Enriched Stem and Progenitor Pools

    Directory of Open Access Journals (Sweden)

    Nina Akrap

    2016-01-01

    Full Text Available The identification of breast cancer cell subpopulations featuring truly malignant stem cell qualities is a challenge due to the complexity of the disease and lack of general markers. By combining extensive single-cell gene expression profiling with three functional strategies for cancer stem cell enrichment including anchorage-independent culture, hypoxia, and analyses of low-proliferative, label-retaining cells derived from mammospheres, we identified distinct stem cell clusters in breast cancer. Estrogen receptor (ERα+ tumors featured a clear hierarchical organization with switch-like and gradual transitions between different clusters, illustrating how breast cancer cells transfer between discrete differentiation states in a sequential manner. ERα− breast cancer showed less prominent clustering but shared a quiescent cancer stem cell pool with ERα+ cancer. The cellular organization model was supported by single-cell data from primary tumors. The findings allow us to understand the organization of breast cancers at the single-cell level, thereby permitting better identification and targeting of cancer stem cells.

  16. Comparison Based on Exergetic Analyses of Two Hot Air Engines: A Gamma Type Stirling Engine and an Open Joule Cycle Ericsson Engine

    Directory of Open Access Journals (Sweden)

    Houda Hachem

    2015-10-01

    Full Text Available In this paper, a comparison of exergetic models between two hot air engines (a Gamma type Stirling prototype having a maximum output mechanical power of 500 W and an Ericsson hot air engine with a maximum power of 300 W is made. Referring to previous energetic analyses, exergetic models are set up in order to quantify the exergy destruction and efficiencies in each type of engine. The repartition of the exergy fluxes in each part of the two engines are determined and represented in Sankey diagrams, using dimensionless exergy fluxes. The results show a similar proportion in both engines of destroyed exergy compared to the exergy flux from the hot source. The compression cylinders generate the highest exergy destruction, whereas the expansion cylinders generate the lowest one. The regenerator of the Stirling engine increases the exergy resource at the inlet of the expansion cylinder, which might be also set up in the Ericsson engine, using a preheater between the exhaust air and the compressed air transferred to the hot heat exchanger.

  17. Crystal analyser-based X-ray phase contrast imaging in the dark field: implementation and evaluation using excised tissue specimens

    Energy Technology Data Exchange (ETDEWEB)

    Ando, Masami [RIST, Tokyo University of Science, Noda, Chiba (Japan); Sunaguchi, Naoki [Gunma University, Graduate School of Engineering, Kiryu, Gunma (Japan); Wu, Yanlin [The Graduate University for Advanced Studies, Department of Materials Structure Science, School of High Energy Accelerator Science, Tsukuba, Ibaraki (Japan); Do, Synho; Sung, Yongjin; Gupta, Rajiv [Massachusetts General Hospital and Harvard Medical School, Department of Radiology, Boston, MA (United States); Louissaint, Abner [Massachusetts General Hospital and Harvard Medical School, Department of Pathology, Boston, MA (United States); Yuasa, Tetsuya [Yamagata University, Faculty of Engineering, Yonezawa, Yamagata (Japan); Ichihara, Shu [Nagoya Medical Center, Department of Pathology, Nagoya, Aichi (Japan)

    2014-02-15

    We demonstrate the soft tissue discrimination capability of X-ray dark-field imaging (XDFI) using a variety of human tissue specimens. The experimental setup for XDFI comprises an X-ray source, an asymmetrically cut Bragg-type monochromator-collimator (MC), a Laue-case angle analyser (LAA) and a CCD camera. The specimen is placed between the MC and the LAA. For the light source, we used the beamline BL14C on a 2.5-GeV storage ring in the KEK Photon Factory, Tsukuba, Japan. In the eye specimen, phase contrast images from XDFI were able to discriminate soft-tissue structures, such as the iris, separated by aqueous humour on both sides, which have nearly equal absorption. Superiority of XDFI in imaging soft tissue was further demonstrated with a diseased iliac artery containing atherosclerotic plaque and breast samples with benign and malignant tumours. XDFI on breast tumours discriminated between the normal and diseased terminal duct lobular unit and between invasive and in-situ cancer. X-ray phase, as detected by XDFI, has superior contrast over absorption for soft tissue processes such as atherosclerotic plaque and breast cancer. (orig.)

  18. Crystal analyser-based X-ray phase contrast imaging in the dark field: implementation and evaluation using excised tissue specimens

    International Nuclear Information System (INIS)

    We demonstrate the soft tissue discrimination capability of X-ray dark-field imaging (XDFI) using a variety of human tissue specimens. The experimental setup for XDFI comprises an X-ray source, an asymmetrically cut Bragg-type monochromator-collimator (MC), a Laue-case angle analyser (LAA) and a CCD camera. The specimen is placed between the MC and the LAA. For the light source, we used the beamline BL14C on a 2.5-GeV storage ring in the KEK Photon Factory, Tsukuba, Japan. In the eye specimen, phase contrast images from XDFI were able to discriminate soft-tissue structures, such as the iris, separated by aqueous humour on both sides, which have nearly equal absorption. Superiority of XDFI in imaging soft tissue was further demonstrated with a diseased iliac artery containing atherosclerotic plaque and breast samples with benign and malignant tumours. XDFI on breast tumours discriminated between the normal and diseased terminal duct lobular unit and between invasive and in-situ cancer. X-ray phase, as detected by XDFI, has superior contrast over absorption for soft tissue processes such as atherosclerotic plaque and breast cancer. (orig.)

  19. Standardized Software for Wind Load Forecast Error Analyses and Predictions Based on Wavelet-ARIMA Models - Applications at Multiple Geographically Distributed Wind Farms

    Energy Technology Data Exchange (ETDEWEB)

    Hou, Zhangshuan; Makarov, Yuri V.; Samaan, Nader A.; Etingov, Pavel V.

    2013-03-19

    Given the multi-scale variability and uncertainty of wind generation and forecast errors, it is a natural choice to use time-frequency representation (TFR) as a view of the corresponding time series represented over both time and frequency. Here we use wavelet transform (WT) to expand the signal in terms of wavelet functions which are localized in both time and frequency. Each WT component is more stationary and has consistent auto-correlation pattern. We combined wavelet analyses with time series forecast approaches such as ARIMA, and tested the approach at three different wind farms located far away from each other. The prediction capability is satisfactory -- the day-ahead prediction of errors match the original error values very well, including the patterns. The observations are well located within the predictive intervals. Integrating our wavelet-ARIMA (‘stochastic’) model with the weather forecast model (‘deterministic’) will improve our ability significantly to predict wind power generation and reduce predictive uncertainty.

  20. Spectroscopic analyses on interaction of Amantadine-Salicylaldehyde, Amantadine-5-Chloro-Salicylaldehyde and Amantadine-o-Vanillin Schiff-Bases with bovine serum albumin (BSA)

    Science.gov (United States)

    Wang, Zhiqiu; Gao, Jingqun; Wang, Jun; Jin, Xudong; Zou, Mingming; Li, Kai; Kang, Pingli

    2011-12-01

    In this work, three Tricyclo [3.3.1.1(3,7)] decane-1-amine (Amantadine) Schiff-Bases, Amantadine-Salicylaldehyde (AS), Amantadine-5-Chloro-Salicylaldehyde (AS-5-C) and Amantadine-o-Vanillin (AS-o-V), were synthesized by direct heating reflux method in ethanol solution and characterized by infrared spectrum and elementary analysis. Fluorescence quenching was used to study the interaction of these Amantadine Schiff-Bases (AS, AS-5-C and AS-o-V) with bovine serum albumin (BSA). According to fluorescence quenching calculations the bimolecular quenching constant ( Kq), apparent quenching constant ( KSV), effective binding constant ( KA) and corresponding dissociation constant ( KD), binding site number ( n) and binding distance ( r) were obtained. The results show that these Amantadine Schiff-Bases can obviously bind to BSA molecules and the binding strength order is AS < AS-5-C = AS-o-V. Synchronous fluorescence spectroscopy reveals that these Amantadine Schiff-Bases adopt different way to bind with BSA molecules. That is, the AS and AS-5-C are accessibility to tryptophan (Trp) residues more than the tyrosine (Tyr) residues, while the AS-o-V is equally close to the Tyr and Trp residues.

  1. A STUDY TO ANALYSE THE EFFICACY OF MODIFIED PILATES BASED EXERCISES AND THERAPEUTIC EXERCISES IN INDIVIDUALS WITH CHRONIC NON SPECIFIC LOW BACK PAIN: A RANDOMIZED CONTROLLED TRAIL

    Directory of Open Access Journals (Sweden)

    U.Albert Anand,

    2014-06-01

    Full Text Available Background: Chronic low back pain is an expensive and difficult condition to treat. Low back pain is the most common musculoskeletal symptoms seen in 85 % of individuals in their life time. One of the interventions widely used by physiotherapists in the treatment of chronic non-specific low back pain (CNLBP is exercise therapy based upon the Pilates principles. Objective: The purpose of the study was to find out the effect of Modified Pilates based exercises for patients with Chronic Non Specific Low Back Pain. Design: A randomized controlled trial, pre test-post test design Setting: The study was conducted in Out Patient Department of physiotherapy, K.G Hospital, Coimbatore, India. Patients: Fifty– two physically active subjects between 18 – 60 years old with Chronic Non specific Low Specific Pain of more than 12 weeks’ duration were randomly assigned into 2 groups. Interventions: Group A subjects underwent a Modified specific Pilates based exercises with Flexibility Exercises & Group B Subjects underwent a Therapeutic Exercises with Flexibility Exercises were conducted over of 8 weeks. Measurements: Back specific Functional Status outcome were measured with the Oswestry Disability Index and pain intensity were measured with Visual analogue scale. Conclusion: The study concluded that the Modified specific Pilates based exercises helps in reducing the pain, improve the back specific function, improve general health, personal Care, Social Life and flexibility in individuals with non specific chronic low back pain than the therapeutic exercise group.

  2. Vitamin D and diabetes in Koreans: analyses based on the Fourth Korea National Health and Nutrition Examination Survey (KNHANES), 2008–2009

    Science.gov (United States)

    Rhee, S Y; Hwang, Y-C; Chung, H Y; Woo, J-T

    2012-01-01

    Aims A causal relationship between vitamin D deficiency and the incidence of diabetes mellitus has been suggested, but little research has been conducted on the Korean population. Methods We analysed the glucose tolerance status and serum 25-hydroxyvitamin D concentrations in 12 263 subjects > 19 years old who were registered for the Korea National Health and Nutrition Examination Survey, 2008–2009. Results Various demographic variables such as gender, age, season, resident area, physical activity, smoking, alcohol, marital status, education and occupation were associated with serum 25-hydroxyvitamin D concentrations. After adjusting for these variables as confounders, 25-hydroxyvitamin D concentrations in subjects with diabetes were significantly lower than those in subjects with normal glucose tolerance and those with impaired fasting glucose (P = 0.005). Compared with the ≥ 75 nmol/l subgroup of serum 25-hydroxyvitamin D concentration, the odds ratios and 95% confidence intervals for diabetes mellitus were 1.206 (95% CI 0.948–1.534) in the 50- to 74-nmol/l subgroup, 1.339 (1.051–1.707) in the 25- to 49-nmol/l subgroup and 1.759 (1.267–2.443) in the < 25-nmol/l subgroup. Compared with the serum ≥ 75-nmol/l 25-hydroxyvitamin D subgroup, serum insulin and homeostasis model assessment 2%B, a marker of insulin secretory capacity, were significantly higher, and homeostasis model assessment 2%S, a marker of insulin sensitivity, was significantly lower in the < 25- and 25- to 49-nmol/l serum 25-hydroxyvitamin D subgroups than those in the other subgroups (P < 0.001). Conclusions The findings suggest that vitamin D deficiency, possibly involving altered insulin sensitivity, is associated with an increased risk for diabetes mellitus in the Korean population. PMID:22247968

  3. Analysing the Concepts of Vengeance and Hono(ur in Shakespeare´s Hamlet and Sumarokov´s Gamlet: A Corpus-based Approach to Literature

    Directory of Open Access Journals (Sweden)

    Irina Keshabyan

    2009-12-01

    Full Text Available The present paper aims at carrying out structural and lexical analysis of two contrasting plays –Shakespeare´s Hamlet and Sumarokov´s Gamlet- in a specific linguistic domain. In this contribution, we will attempt to gain some insight into two essential content words: vengeance and hono(ur, their derivatives and related words, through quantitative analysis of these words and qualitative analysis of their collocates and concordances. Collocational approach will be used to analyse and compare the ways the authors perceive the concepts of vengeance and hono(ur. In general, the findings will indicate important similarities and/or differences between the structures of the plays per acts and both texts´ basic contents in relation to two important topics -vengeance and hono(ur.El presente artículo tiene como objetivo un análisis estructural y léxico de dos obras contrastivas –Hamlet de Shakespeare y Gamlet de Sumarokov- en un dominio lingüístico específico. En esta contribución, intentaremos adentrarse en el estudio de dos sustantivos: venganza y honor, sus derivados y palabras relacionadas- a través de un análisis cuantitativo de las mismas y el análisis cualitativo de sus colocados y concordancias. El método de los colocados será utilizado para analizar y comparar el modo en que los autores perciben los conceptos de venganza y honor. En general, los resultados van a señalar las similitudes y/o diferencias importantes entre las estructuras de las obras por actos y los contenidos básicos de ambos textos en relación con dos temas importantes, tal como, venganza y honor.

  4. After BRCA1 and BRCA2-what next? Multifactorial segregation analyses of three-generation, population-based Australian families affected by female breast cancer.

    Science.gov (United States)

    Cui, J; Antoniou, A C; Dite, G S; Southey, M C; Venter, D J; Easton, D F; Giles, G G; McCredie, M R; Hopper, J L

    2001-02-01

    Mutations in BRCA1 and BRCA2 that cause a dominantly inherited high risk of female breast cancer seem to explain only a small proportion of the aggregation of the disease. To study the possible additional genetic components, we conducted single-locus and two-locus segregation analyses, with and without a polygenic background, using three-generation families ascertained through 858 women with breast cancer diagnosed at age Australia. Extensive testing for deleterious mutations in BRCA1 and BRCA2, to date, has identified 34 carriers. Our analysis suggested that, after other possible unmeasured familial factors are adjusted for and the known BRCA1 and BRCA2 mutation carriers are excluded, there appears to be a residual dominantly inherited risk of female breast cancer in addition to that derived from mutations in BRCA1 and BRCA2. This study also suggests that there is a substantial recessively inherited risk of early-onset breast cancer. According to the best-fitting model, after excluding known carriers of mutations in BRCA1 and BRCA2, about 1/250 (95% confidence interval [CI] 1/500 to 1/125) women have a recessive risk of 86% (95% CI 69%-100%) by age 50 years and of almost 100% by age 60 years. Possible reasons that our study has implicated a novel strong recessive effect include our inclusion of data on lineal aunts and grandmothers, study of families ascertained through women with early-onset breast cancer, allowance for multiple familial factors in the analysis, and removal of families for whom the cause (i.e., BRCA1 or BRCA2) is known. Our findings may have implications for attempts to identify new breast cancer-susceptibility genes. PMID:11133358

  5. Fungal and Prokaryotic Activities in the Marine Subsurface Biosphere at Peru Margin and Canterbury Basin Inferred from RNA-Based Analyses and Microscopy.

    Science.gov (United States)

    Pachiadaki, Maria G; Rédou, Vanessa; Beaudoin, David J; Burgaud, Gaëtan; Edgcomb, Virginia P

    2016-01-01

    The deep sedimentary biosphere, extending 100s of meters below the seafloor harbors unexpected diversity of Bacteria, Archaea, and microbial eukaryotes. Far less is known about microbial eukaryotes in subsurface habitats, albeit several studies have indicated that fungi dominate microbial eukaryotic communities and fungal molecular signatures (of both yeasts and filamentous forms) have been detected in samples as deep as 1740 mbsf. Here, we compare and contrast fungal ribosomal RNA gene signatures and whole community metatranscriptomes present in sediment core samples from 6 and 95 mbsf from Peru Margin site 1229A and from samples from 12 and 345 mbsf from Canterbury Basin site U1352. The metatranscriptome analyses reveal higher relative expression of amino acid and peptide transporters in the less nutrient rich Canterbury Basin sediments compared to the nutrient rich Peru Margin, and higher expression of motility genes in the Peru Margin samples. Higher expression of genes associated with metals transporters and antibiotic resistance and production was detected in Canterbury Basin sediments. A poly-A focused metatranscriptome produced for the Canterbury Basin sample from 345 mbsf provides further evidence for active fungal communities in the subsurface in the form of fungal-associated transcripts for metabolic and cellular processes, cell and membrane functions, and catalytic activities. Fungal communities at comparable depths at the two geographically separated locations appear dominated by distinct taxa. Differences in taxonomic composition and expression of genes associated with particular metabolic activities may be a function of sediment organic content as well as oceanic province. Microscopic analysis of Canterbury Basin sediment samples from 4 and 403 mbsf produced visualizations of septate fungal filaments, branching fungi, conidiogenesis, and spores. These images provide another important line of evidence supporting the occurrence and activity of fungi in

  6. BiodivERsA project VineDivers: Analysing interlinkages between soil biota and biodiversity-based ecosystem services in vineyards across Europe

    Science.gov (United States)

    Zaller, Johann G.; Winter, Silvia; Strauss, Peter; Querner, Pascal; Kriechbaum, Monika; Pachinger, Bärbel; Gómez, José A.; Campos, Mercedes; Landa, Blanca; Popescu, Daniela; Comsa, Maria; Iliescu, Maria; Tomoiaga, Liliana; Bunea, Claudiu-Ioan; Hoble, Adela; Marghitas, Liviu; Rusu, Teodor; Lora, Ángel; Guzmán, Gema; Bergmann, Holger

    2015-04-01

    Essential ecosystem services provided by viticultural landscapes result from diverse communities of above- and belowground organisms and their interactions. For centuries traditional viticulture was part of a multifunctional agricultural system including low-input grasslands and fruit trees resulting in a high functional biodiversity. However, in the last decades intensification and mechanisation of vineyard management caused a separation of production and conservation areas. As a result of management intensification including frequent tilling and/or use of pesticides several ecosystem services are affected leading to high rates of soil erosion, degradation of soil structure and fertility, contamination of groundwater and high levels of agricultural inputs. In this transdisciplinary BiodivERsA project we will examine to what extent differently intensive managed vineyards affect the activity and diversity of soil biota (e.g. earthworms, collembola, soil microorganisms) and how this feed back on aboveground biodiversity (e.g. weeds, pollinators). We will also investigate ecosystem services associated with soil faunal activity and biodiversity such as soil structure, the formation of stable soil aggregates, water infiltration, soil erosion as well as grape quality. These effects will become increasingly important as more extreme precipitation events are predicted with climate change. The socio-economic part of the project will investigate the role of diversely structured, species-rich viticultural landscapes as a cultural heritage providing aesthetic values for human well-being and recreation. The project objectives will be analysed at plot, field (vineyard) and landscape scales in vineyards located in Spain, France, Romania and Austria. A detailed engagement and dissemination plan for stakeholder at the different governance levels will accompany scientific research and will contribute to the implementation of best-practice recommendations for policy and farmers.

  7. Studies on changes of elemental concentration in a humanbody by means of analyses of long hairs based on the standard-free method

    International Nuclear Information System (INIS)

    We established and reported two years ago the original methods for evaluating daily changes of elemental concentration in a body by means of a standard-free method for powdered beard samples daily taken with electric shaver. It was found that the method is quite useful for investigating short- and long-term changes of elemental concentration in a body. However, the method for beard analysis is applicable only to men. In order to estimate daily changes of elemental concentration in a body for women and children, a new method which allows us to quantitatively analyze hair samples cut into 1 mm pieces has been developed and applied to three long hair samples taken from three persons. It is found that the method enables us to estimate both long- and short-term changes in elemental concentration in a body a well as beard analysis. It is found that sulfur keeps almost constant over a long period, and arsenic shows very rapid changes with a few days' period, while mercury shows only long-term changes with the period of a few months. These behaviors are almost the same as those observed in beard analyses. On the other hand, bromine shows a certain seasonal changes; its concentration shows a certain trend of increasing in summer and decreasing in winter. Lead and calcium show very long-term changes, and the behavior of strontium is quite similar to that of calcium. The method is expected to give us information about history of changes in elemental concentration in a human body over a few or more years. It is expected that the behavior of arsenic showing rapid elevation within a few days can be explained as a response to intakes of arsenic-rich foods. It is expected that the method gives us a clue to the identification of the main pathways of human exposure to certain toxic elements. (author)

  8. Genome-wide analyses of exonic copy number variants in a family-based study point to novel autism susceptibility genes.

    Directory of Open Access Journals (Sweden)

    Maja Bucan

    2009-06-01

    Full Text Available The genetics underlying the autism spectrum disorders (ASDs is complex and remains poorly understood. Previous work has demonstrated an important role for structural variation in a subset of cases, but has lacked the resolution necessary to move beyond detection of large regions of potential interest to identification of individual genes. To pinpoint genes likely to contribute to ASD etiology, we performed high density genotyping in 912 multiplex families from the Autism Genetics Resource Exchange (AGRE collection and contrasted results to those obtained for 1,488 healthy controls. Through prioritization of exonic deletions (eDels, exonic duplications (eDups, and whole gene duplication events (gDups, we identified more than 150 loci harboring rare variants in multiple unrelated probands, but no controls. Importantly, 27 of these were confirmed on examination of an independent replication cohort comprised of 859 cases and an additional 1,051 controls. Rare variants at known loci, including exonic deletions at NRXN1 and whole gene duplications encompassing UBE3A and several other genes in the 15q11-q13 region, were observed in the course of these analyses. Strong support was likewise observed for previously unreported genes such as BZRAP1, an adaptor molecule known to regulate synaptic transmission, with eDels or eDups observed in twelve unrelated cases but no controls (p = 2.3x10(-5. Less is known about MDGA2, likewise observed to be case-specific (p = 1.3x10(-4. But, it is notable that the encoded protein shows an unexpectedly high similarity to Contactin 4 (BLAST E-value = 3x10(-39, which has also been linked to disease. That hundreds of distinct rare variants were each seen only once further highlights complexity in the ASDs and points to the continued need for larger cohorts.

  9. Digital differential analysers

    CERN Document Server

    Shilejko, A V; Higinbotham, W

    1964-01-01

    Digital Differential Analysers presents the principles, operations, design, and applications of digital differential analyzers, a machine with the ability to present initial quantities and the possibility of dividing them into separate functional units performing a number of basic mathematical operations. The book discusses the theoretical principles underlying the operation of digital differential analyzers, such as the use of the delta-modulation method and function-generator units. Digital integration methods and the classes of digital differential analyzer designs are also reviewed. The te

  10. Wavelet analyses and applications

    Energy Technology Data Exchange (ETDEWEB)

    Bordeianu, Cristian C [Faculty of Physics, University of Bucharest, Bucharest, RO 077125 (Romania); Landau, Rubin H [Department of Physics, Oregon State University, Corvallis, OR 97331 (United States); Paez, Manuel J [Department of Physics, University of Antioquia, Medellin (Colombia)], E-mail: cristian.bordeianu@brahms.fizica.unibuc.ro, E-mail: rubin@science.oregonstate.edu, E-mail: mpaez@fisica.udea.edu.co

    2009-09-15

    It is shown how a modern extension of Fourier analysis known as wavelet analysis is applied to signals containing multiscale information. First, a continuous wavelet transform is used to analyse the spectrum of a nonstationary signal (one whose form changes in time). The spectral analysis of such a signal gives the strength of the signal in each frequency as a function of time. Next, the theory is specialized to discrete values of time and frequency, and the resulting discrete wavelet transform is shown to be useful for data compression. This paper is addressed to a broad community, from undergraduate to graduate students to general physicists and to specialists in other fields than wavelets.

  11. Systemdynamisk analyse av vannkraftsystem

    OpenAIRE

    Rydning, Anja

    2007-01-01

    I denne oppgaven er det gjennomført en dynamisk analyse av vannkraftverket Fortun kraftverk. Tre fenomener er særlig vurdert i denne oppgaven: Sjaktsvingninger mellom svingesjakt og magasin, trykkstøt ved turbinen som følge av retardasjonstrykk ved endring i turbinvannføringen og reguleringsstabilitet. Sjaktsvingningene og trykkstøt beregnes analytisk ut fra kontinuitets- og bevegelsesligningen. Modeller av Fortun kraftverk er laget for å beregne trykkstøt og sjaktsvingninger. En modell e...

  12. AMS analyses at ANSTO

    Energy Technology Data Exchange (ETDEWEB)

    Lawson, E.M. [Australian Nuclear Science and Technology Organisation, Lucas Heights, NSW (Australia). Physics Division

    1998-03-01

    The major use of ANTARES is Accelerator Mass Spectrometry (AMS) with {sup 14}C being the most commonly analysed radioisotope - presently about 35 % of the available beam time on ANTARES is used for {sup 14}C measurements. The accelerator measurements are supported by, and dependent on, a strong sample preparation section. The ANTARES AMS facility supports a wide range of investigations into fields such as global climate change, ice cores, oceanography, dendrochronology, anthropology, and classical and Australian archaeology. Described here are some examples of the ways in which AMS has been applied to support research into the archaeology, prehistory and culture of this continent`s indigenous Aboriginal peoples. (author)

  13. 基于CBT组播路由协议的组密钥管理协议分析与改进%Analyses and Improvement on Group Key Management Protocol Based on CBT Multicast Routing Protocol

    Institute of Scientific and Technical Information of China (English)

    张斌; 邬江兴

    2001-01-01

    In RFC1949,A. Ballardie proposed a method of scalable multicast key distribution based on the Core Based Tree multicast protocol fitting for wide-area IP multicasting. This paper analyses the method deeply,points out that the model can't resist the key compromise of a single member effectively,and proposes two kinds of improvement. One is the distributed generating and distributing group data encryption key,the other one is partitioning the group into subgroups. These improvements can increase the security and lifetime of the group key,and decrease the loss of compromise of a single group key encryption key.

  14. Analysing Individual Income Tax Planning in Colleges and Universities---Based on the Normal Wage Income and Annual Salary of One-time Bonus Tax

    Institute of Scientific and Technical Information of China (English)

    LI Xiao-hua

    2013-01-01

    Paying personal income tax is related to the vital interests of each faculty. In order to improve the faculty’s enthusiasm for work, it's very essential to make a plan for paying personal income tax.Based on the method of paying personal income tax, this essay gives a strategic analysis of tax planning with a combination of the university faculty’s actual salary situation.

  15. A phase separation method for analyses of fluoroquinones in meats based on ultrasound-assisted salt-induced liquid-liquid microextraction and a new integrated device

    OpenAIRE

    Wang, H; Gao, M.; Xu, Y; W. Wang; Zheng, L; Dahlgren, RA; Wang, X.

    2015-01-01

    © 2015 Elsevier Ltd. Herein, we developed a novel integrated device to perform phase separation based on ultrasound-assisted, salt-induced, liquid-liquid microextraction for determination of five fluoroquinones in meats by HPLC analysis. The novel integrated device consisted of three simple HDPE (high density polyethylene) parts that were used to separate the solvent from the aqueous solution prior to retrieving the extractant. The extraction parameters were optimized using the response surfa...

  16. Net Energy, CO 2 Emission and Land-Based Cost-Benefit Analyses of Jatropha Biodiesel: A Case Study of the Panzhihua Region of Sichuan Province in China

    OpenAIRE

    Xiangzheng Deng; Jianzhi Han; Fang Yin

    2012-01-01

    Bioenergy is currently regarded as a renewable energy source with a high growth potential. Forest-based biodiesel, with the significant advantage of not competing with grain production on cultivated land, has been considered as a promising substitute for diesel fuel by many countries, including China. Consequently, extracting biodiesel from Jatropha curcas has become a growing industry. However, many key issues related to the development of this indus...

  17. Analyses on RF Performances of Silicon-Compatible InGaAs-Based Planar-Type and Fin-Type Junctionless Field-Effect Transistors.

    Science.gov (United States)

    Seo, Jae Hwa; Yoon, Young Jun; Cho, Seongjae; Tae, Heung-Sik; Lee, Jung-Hee; Kang, In Man

    2015-10-01

    The InO.53Ga0.47As-based planar-type junctionless fieled-effect transistor (JLFET) and fin-type FET (FinFET) have been designed and characterized by technology computer-aided design (TCAD) simulations. Because of their attractive material characteristics, the combination of In0.53Ga0.47As and InP has been adopted in some of the most recent semiconductor devices. In particular, the In0.53Ga0.47As-based transistor using an InP buffer is highly attractive due to its superior electrostatic performance which results from the by particular characteristics of the In0.53Ga0.47As material. In this paper, we focus on using small-signal RF modeling and Y-parameter extraction methods th extract various RF characteristics, such as gate capacitance, transconductance (gm), cut-off frequency (fT), and maximum oscillation frequency (fmax). The proposed InO.53Ga0.47As-based FinFET exhibits an on-state current (Ion) of 1030 μA/μm and an off-state current (Ioff) of 1.2 x 10(-13) A/μm with a threshold voltage (Vth) of 0.1 V, and a subthreshold swing (S) of 96 mV/dec. In addition, fT and fmax are determined to be 243 GHz and 1.6 THz, respectively. PMID:26726384

  18. A DNA-based method for identification of krill species and its application to analysing the diet of marine vertebrate predators.

    Science.gov (United States)

    Jarman, S N; Gales, N J; Tierney, M; Gill, P C; Elliott, N G

    2002-12-01

    Accurate identification of species that are consumed by vertebrate predators is necessary for understanding marine food webs. Morphological methods for identifying prey components after consumption often fail to make accurate identifications of invertebrates because prey morphology becomes damaged during capture, ingestion and digestion. Another disadvantage of morphological methods for prey identification is that they often involve sampling procedures that are disruptive for the predator, such as stomach flushing or lethal collection. We have developed a DNA-based method for identifying species of krill (Crustacea: Malacostraca), an enormously abundant group of invertebrates that are directly consumed by many groups of marine vertebrates. The DNA-based approach allows identification of krill species present in samples of vertebrate stomach contents, vomit, and, more importantly, faeces. Utilizing samples of faeces from vertebrate predators minimizes the impact of dietary studies on the subject animals. We demonstrate our method first on samples of Adelie penguin (Pygoscelis adeliae) stomach contents, where DNA-based species identification can be confirmed by prey morphology. We then apply the method to faeces of Adelie penguins and to faeces of the endangered pygmy blue whale (Balaenoptera musculus brevicauda). In each of these cases, krill species consumed by the predators could be identified from their DNA present in faeces or stomach contents. PMID:12453250

  19. Parallel Assessment of the Impact of Different Hormone Replacement Therapies on Breast Density by Radiologist- and Computer-Based Analyses of Mammograms

    DEFF Research Database (Denmark)

    Pettersen, Paola; Raundahl, Jakob; Loog, Marco;

    2008-01-01

    OBJECTIVES: First, to compare the impact of nasally and orally dosed estradiol on breast density; second, to investigate the utility of computer-based automated approaches to the assessment of breast density with reference to traditional methods. METHODS: Digitized images from two 2-year, randomi......OBJECTIVES: First, to compare the impact of nasally and orally dosed estradiol on breast density; second, to investigate the utility of computer-based automated approaches to the assessment of breast density with reference to traditional methods. METHODS: Digitized images from two 2-year......, randomized, placebo-controlled trials formed the basis of the present post hoc analysis. Active treatments were 1 mg estradiol continuously combined with 0.125 mg trimegestone (oral hormone replacement therapy, HRT) or low-dose (150 or 300 microg estradiol) nasal estradiol cyclically combined with 200 mg...... micronized progesterone (nasal HRT). The effects on breast density were assessed by a radiologist, providing the BI-RADS score and the interactive threshold, and by a computer-based approach, providing the measure of stripiness and the HRT-effect specific measure of breast density. RESULTS: In the oral HRT...

  20. Mitogenomic analyses of eutherian relationships.

    Science.gov (United States)

    Arnason, U; Janke, A

    2002-01-01

    Reasonably correct phylogenies are fundamental to the testing of evolutionary hypotheses. Here, we present phylogenetic findings based on analyses of 67 complete mammalian mitochondrial (mt) genomes. The analyses, irrespective of whether they were performed at the amino acid (aa) level or on nucleotides (nt) of first and second codon positions, placed Erinaceomorpha (hedgehogs and their kin) as the sister group of remaining eutherians. Thus, the analyses separated Erinaceomorpha from other traditional lipotyphlans (e.g., tenrecs, moles, and shrews), making traditional Lipotyphla polyphyletic. Both the aa and nt data sets identified the two order-rich eutherian clades, the Cetferungulata (comprising Pholidota, Carnivora, Perissodactyla, Artiodactyla, and Cetacea) and the African clade (Tenrecomorpha, Macroscelidea, Tubulidentata, Hyracoidea, Proboscidea, and Sirenia). The study corroborated recent findings that have identified a sister-group relationship between Anthropoidea and Dermoptera (flying lemurs), thereby making our own order, Primates, a paraphyletic assembly. Molecular estimates using paleontologically well-established calibration points, placed the origin of most eutherian orders in Cretaceous times, 70-100 million years before present (MYBP). The same estimates place all primate divergences much earlier than traditionally believed. For example, the divergence between Homo and Pan is estimated to have taken place approximately 10 MYBP, a dating consistent with recent findings in primate paleontology.

  1. Mitogenomic analyses of eutherian relationships.

    Science.gov (United States)

    Arnason, U; Janke, A

    2002-01-01

    Reasonably correct phylogenies are fundamental to the testing of evolutionary hypotheses. Here, we present phylogenetic findings based on analyses of 67 complete mammalian mitochondrial (mt) genomes. The analyses, irrespective of whether they were performed at the amino acid (aa) level or on nucleotides (nt) of first and second codon positions, placed Erinaceomorpha (hedgehogs and their kin) as the sister group of remaining eutherians. Thus, the analyses separated Erinaceomorpha from other traditional lipotyphlans (e.g., tenrecs, moles, and shrews), making traditional Lipotyphla polyphyletic. Both the aa and nt data sets identified the two order-rich eutherian clades, the Cetferungulata (comprising Pholidota, Carnivora, Perissodactyla, Artiodactyla, and Cetacea) and the African clade (Tenrecomorpha, Macroscelidea, Tubulidentata, Hyracoidea, Proboscidea, and Sirenia). The study corroborated recent findings that have identified a sister-group relationship between Anthropoidea and Dermoptera (flying lemurs), thereby making our own order, Primates, a paraphyletic assembly. Molecular estimates using paleontologically well-established calibration points, placed the origin of most eutherian orders in Cretaceous times, 70-100 million years before present (MYBP). The same estimates place all primate divergences much earlier than traditionally believed. For example, the divergence between Homo and Pan is estimated to have taken place approximately 10 MYBP, a dating consistent with recent findings in primate paleontology. PMID:12438776

  2. Analyses of a Virtual World

    CERN Document Server

    Holovatch, Yurij; Szell, Michael; Thurner, Stefan

    2016-01-01

    We present an overview of a series of results obtained from the analysis of human behavior in a virtual environment. We focus on the massive multiplayer online game (MMOG) Pardus which has a worldwide participant base of more than 400,000 registered players. We provide evidence for striking statistical similarities between social structures and human-action dynamics in the real and virtual worlds. In this sense MMOGs provide an extraordinary way for accurate and falsifiable studies of social phenomena. We further discuss possibilities to apply methods and concepts developed in the course of these studies to analyse oral and written narratives.

  3. Distinct summer and winter bacterial communities in the active layer of Svalbard permafrost revealed by DNA- and RNA-based analyses

    Energy Technology Data Exchange (ETDEWEB)

    Schostag, Morten; Stibal, Marek; Jacobsen, Carsten S.; Baelum, Jacob; Tas, Neslihan; Elberling, Bo; Jansson, Janet K.; Semenchuk, Phillip; Prieme, Anders

    2015-04-30

    The active layer of soil overlaying permafrost in the Arctic is subjected to dramatic annual changes in temperature and soil chemistry, which likely affect bacterial activity and community structure. We studied seasonal variations in the bacterial community of active layer soil from Svalbard (78°N) by co-extracting DNA and RNA from 12 soil cores collected monthly over a year. PCR amplicons of 16S rRNA genes (DNA) and reverse transcribed transcripts (cDNA) were quantified and sequenced to test for the effect of low winter temperature and seasonal variation in concentration of easily degradable organic matter on the bacterial communities. The copy number of 16S rRNA genes and transcripts revealed no distinct seasonal changes indicating potential bacterial activity during winter despite soil temperatures well below -10°C. Multivariate statistical analysis of the bacterial diversity data (DNA and cDNA libraries) revealed a season-based clustering of the samples, and, e.g., the relative abundance of potentially active Cyanobacteria peaked in June and Alphaproteobacteria increased over the summer and then declined from October to November. The structure of the bulk (DNA-based) community was significantly correlated with pH and dissolved organic carbon, while the potentially active (RNA-based) community structure was not significantly correlated with any of the measured soil parameters. A large fraction of the 16S rRNA transcripts was assigned to nitrogen-fixing bacteria (up to 24% in June) and phototrophic organisms (up to 48% in June) illustrating the potential importance of nitrogen fixation in otherwise nitrogen poor Arctic ecosystems and of phototrophic bacterial activity on the soil surface.

  4. Anthocyanin analyses of Vaccinium fruit dietary supplements

    Science.gov (United States)

    Vaccinium fruit ingredients within dietary supplements were identified by comparisons with anthocyanin analyses of known Vaccinium profiles (demonstration of anthocyanin fingerprinting). Available Vaccinium supplements were purchased and analyzed; their anthocyanin profiles (based on HPLC separation...

  5. Analyse, Modélisation et Simulation des Pertes dans un Module Photovoltaïque à Base de Silicium Monocristallin

    OpenAIRE

    OULED SALEM, Mohamed

    2010-01-01

    Les modules photovoltaïques perdent environ 70% de l'énergie qu'ils reçoivent sur leur surface. plusieurs paramètres peuvent entrainer des pertes qui sont principalement causées par les propriétés physiques des matériaux de base du modules, comme l'énergie du gap, indice de réfraction, ou par les matériaux utilisés dans l'encapsulation et le groupement des cellules dans le module afin, de permettre leur utilisation à des tensions et courants pratiques tout en assurant leur isolation électriqu...

  6. A phase separation method for analyses of fluoroquinones in meats based on ultrasound-assisted salt-induced liquid-liquid microextraction and a new integrated device.

    Science.gov (United States)

    Wang, Huili; Gao, Ming; Xu, Youqu; Wang, Wenwei; Zheng, Lian; Dahlgren, Randy A; Wang, Xuedong

    2015-08-01

    Herein, we developed a novel integrated device to perform phase separation based on ultrasound-assisted, salt-induced, liquid-liquid microextraction for determination of five fluoroquinones in meats by HPLC analysis. The novel integrated device consisted of three simple HDPE (high density polyethylene) parts that were used to separate the solvent from the aqueous solution prior to retrieving the extractant. The extraction parameters were optimized using the response surface method based on central composite design: 589μL of acetone solvent, pH2.1, 4.1min extraction time and 3.5g of Na2SO4. The limits of detection were 0.056-0.64 μgkg(-1) and recoveries were 87.2-110.6% for the five fluoroquinones in muscle tissue from fish, chicken, pork and beef. This method is easily constructed from inexpensive materials, extraction efficiency is high, and the approach is compatible with HPLC analysis. Thus, it has excellent prospects for sample pre-treatment and analysis of fluoroquinones in meat samples. PMID:25885797

  7. Structural analyses of experimental 13C edited amide I' IR and VCD for peptide β-sheet aggregates and fibrils using DFT-based spectral simulations.

    Science.gov (United States)

    Welch, William R W; Keiderling, Timothy A; Kubelka, Jan

    2013-09-12

    In the preceding paper, computational models based on density functional theory (DFT) were presented to characterize the sensitivity of vibrational spectroscopic methods (IR, VCD, and Raman) to structural features of β-sheets. Isotopically edited amide I' IR for peptides labeled with (13)C in multiple different sites provides the most structurally distinct signatures of strand alignment, while VCD is sensitive to the sheet twist and intersheet stacking. In this report, we simulate the IR and VCD spectra for models approximating structures of four β-sheet forming peptides previously experimentally studied using these methods with (13)C isotopic editing. Various register alignments are tested. Agreement with experiment is evaluated based on frequency shifts of both the (12)C and (13)C IR amide I' signals, relative intensity patterns, and VCD spectra where available. While for the simulation of IR spectra canonical planar sheets provide a sufficient model system, for VCD simulation twisted, stacked sheets are required in order to reproduce strong couplet-like amide I' VCD. Effects of the solvent (water) and amino acid side chains are also tested by using a simplified, electrostatic solvent model and atomic partial charges for the side chains. Very good agreement with experimental spectra is obtained, particularly for the relative (12)C and (13)C band frequencies. All four peptide models are shown to be antiparallel as had previously been assumed. However, in some cases our simulations are consistent with different register alignment of strands than originally proposed.

  8. Multivariate analyses to assess the effects of surgeon and hospital volume on cancer survival rates: a nationwide population-based study in Taiwan.

    Directory of Open Access Journals (Sweden)

    Chun-Ming Chang

    Full Text Available BACKGROUND: Positive results between caseloads and outcomes have been validated in several procedures and cancer treatments. However, there is limited information available on the combined effects of surgeon and hospital caseloads. We used nationwide population-based data to explore the association between surgeon and hospital caseloads and survival rates for major cancers. METHODOLOGY: A total of 11,677 patients with incident cancer diagnosed in 2002 were identified from the Taiwan National Health Insurance Research Database. Survival analysis, the Cox proportional hazards model, and propensity scores were used to assess the relationship between 5-year survival rates and different caseload combinations. RESULTS: Based on the Cox proportional hazard model, cancer patients treated by low-volume surgeons in low-volume hospitals had poorer survival rates, and hazard ratios ranged from 1.3 in head and neck cancer to 1.8 in lung cancer after adjusting for patients' demographic variables, co-morbidities, and treatment modality. When analyzed using the propensity scores, the adjusted 5-year survival rates were poorer for patients treated by low-volume surgeons in low-volume hospitals, compared to those treated by high-volume surgeons in high-volume hospitals (P<0.005. CONCLUSIONS: After adjusting for differences in the case mix, cancer patients treated by low-volume surgeons in low-volume hospitals had poorer 5-year survival rates. Payers may implement quality care improvement in low-volume surgeons.

  9. A 100% renewable electricity mix? Analyses and optimisations. Testing the boundaries of renewable energy-based electricity development in metropolitan France by 2050

    International Nuclear Information System (INIS)

    In 2013, ADEME published its energy and climate scenarios for the period 2030 to 2050, suggesting possible avenues to achieve a four-fold reduction in greenhouse-gas emissions by 2050 by cutting energy consumption by half and deploying renewable energy sources for electricity generation on a substantial scale. Both of these objectives were the basis for targets set by the President of France and subsequently adopted by Parliament in the Energy Transition Law to promote green growth. With this new study, ADEME submits an exploratory scientific prospective study. Questions of balance between production and demand and cost efficiency of renewable-based electricity mixes are investigated through an advanced optimisation. The electricity mixes are theoretical: they are created from scratch and do not take into account the current situation or the path needed to achieve a 100% renewable-based electricity system. It aims at highlighting the technical measures to be implemented (strengthening grids, load shedding and storage) to support a policy of growth in renewable electricity technologies. It is also be used to identify the key factors for developing renewable technologies at lower cost such as lower costs of technologies, demand-side management, development of flexibility, support of R and D of least-mature technologies and the social acceptance of renewable electricity installations. (authors)

  10. EUROCONTROL-Systemic Occurrence Analysis Methodology (SOAM)-A 'Reason'-based organisational methodology for analysing incidents and accidents

    Energy Technology Data Exchange (ETDEWEB)

    Licu, Tony [EUROCONTROL-European Organization for the Safety of Air Navigation and Dedale Asia Pacific, Safety Team, Rue de la Fusee, 96, 1130 Brussels (Belgium)]. E-mail: antonio.licu@eurocontrol.int; Cioran, Florin [EUROCONTROL-European Organization for the Safety of Air Navigation and Dedale Asia Pacific, Safety Team, Rue de la Fusee, 96, 1130 Brussels (Belgium)]. E-mail: florin.cioran@eurocontrol.int; Hayward, Brent [EUROCONTROL-European Organization for the Safety of Air Navigation and Dedale Asia Pacific, Safety Team, Rue de la Fusee, 96, 1130 Brussels (Belgium)]. E-mail: bhayward@dedale.net; Lowe, Andrew [EUROCONTROL-European Organization for the Safety of Air Navigation and Dedale Asia Pacific, Safety Team, Rue de la Fusee, 96, 1130 Brussels (Belgium)]. E-mail: alowe@dedale.net

    2007-09-15

    The Safety Occurrence Analysis Methodology (SOAM) developed for EUROCONTROL is an accident investigation methodology based on the Reason Model of organisational accidents. The purpose of a SOAM is to broaden the focus of an investigation from human involvement issues, also known as 'active failures of operational personnel' under Reason's original model, to include analysis of the latent conditions deeper within the organisation that set the context for the event. Such an approach is consistent with the tenets of Just Culture in which people are encouraged to provide full and open information about how incidents occurred, and are not penalised for errors. A truly systemic approach is not simply a means of transferring responsibility for a safety occurrence from front-line employees to senior managers. A consistent philosophy must be applied, where the investigation process seeks to correct deficiencies wherever they may be found, without attempting to apportion blame or liability.

  11. An example of maintenance program based on a risk analysis; Un exemple de programme de maintenance et etabli sur une analyse des risques

    Energy Technology Data Exchange (ETDEWEB)

    Beringuier, J.P.; Laurens, F.; Notarianni, P.; Reys, P.; Dole, J.M. [Gaz de France (GDF), 75 - Paris (France)

    2000-07-01

    The object of this communication is to present the background of Gaz de France regarding the development, the implementation and the first results of a gas transmission pipelines inspection and rehabilitation program. The development of this program is based on a failure risk analysis. The result of this risk analysis is used to define the order of priority for pipelines inspection. This program allows to allocate maintenance expenses in the most effective way regarding risk reduction, costs and safety goals to be achieved. This program appears to be a modern and flexible tool to promote the safety level of gas transmission pipelines in the eyes of the authorities, the customers and the market regulator. (author)

  12. Pitfalls of voxel-based amyloid PET analyses for diagnosis of Alzheimer's disease. Artifacts due to non-specific uptake in the white matter and the skull

    International Nuclear Information System (INIS)

    Two methods are commonly used in brain image voxel-based analyses widely used for dementia work-ups: 3-dimensional stereotactic surface projections (3D-SSP) and statistical parametric mapping (SPM). The methods calculate the Z-scores of the cortical voxels that represent the significance of differences compared to a database of brain images with normal findings, and visualize them as surface brain maps. The methods are considered useful in amyloid positron emission tomography (PET) analyses to detect small amounts of amyloid-β deposits in early-stage Alzheimer's disease (AD), but are not fully validated. We analyzed the 11C-labeled 2-(2-[2-dimethylaminothiazol-5-yl]ethenyl)-6-(2-[fluoro]ethoxy)benzoxazole (BF-227) amyloid PET imaging of 56 subjects (20 individuals with mild cognitive impairment [MCl], 19 AD patients, and 17 non-demented [ND] volunteers) with 3D-SSP and the easy Z-score imaging system (eZIS) that is an SPM-based method. To clarify these methods' limitations, we visually compared Z-score maps output from the two methods and investigated the causes of discrepancies between them. Discrepancies were found in 27 subjects (9 MCl, 13 AD, and 5 ND). Relatively high white matter uptake was considered to cause higher Z-scores on 3D-SSP in 4 subjects (1 MCl and 3 ND). Meanwhile, in 17 subjects (6 MCl, 9 AD, and 2 ND), Z-score overestimation on eZIS corresponded with high skull uptake and disappeared after removing the skull uptake ('scalping'). Our results suggest that non-specific uptakes in the white matter and skull account for errors in voxel-based amyloid PET analyses. Thus, diagnoses based on 3D-SSP data require checking white matter uptake, and 'scalping' is recommended before eZIS analysis. (author)

  13. Some novel insights on HPV16 related cervical cancer pathogenesis based on analyses of LCR methylation, viral load, E7 and E2/E4 expressions.

    Directory of Open Access Journals (Sweden)

    Damayanti Das Ghosh

    Full Text Available This study was undertaken to decipher the interdependent roles of (i methylation within E2 binding site I and II (E2BS-I/II and replication origin (nt 7862 in the long control region (LCR, (ii expression of viral oncogene E7, (iii expression of the transcript (E7-E1/E4 that encodes E2 repressor protein and (iv viral load, in human papillomavirus 16 (HPV16 related cervical cancer (CaCx pathogenesis. The results revealed over-representation (p<0.001 of methylation at nucleotide 58 of E2BS-I among E2-intact CaCx cases compared to E2-disrupted cases. Bisulphite sequencing of LCR revealed overrepresentation of methylation at nucleotide 58 or other CpGs in E2BS-I/II, among E2-intact cases than E2-disrupted cases and lack of methylation at replication origin in case of both. The viral transcript (E7-E1/E4 that produces the repressor E2 was analyzed by APOT (amplification of papillomavirus oncogenic transcript-coupled-quantitative-RT-PCR (of E7 and E4 genes to distinguish episomal (pure or concomitant with integrated from purely integrated viral genomes based on the ratio, E7 C(T/E4 C(T. Relative quantification based on comparative C(T (threshold cycle method revealed 75.087 folds higher E7 mRNA expression in episomal cases over purely integrated cases. Viral load and E2 gene copy numbers were negatively correlated with E7 C(T (p = 0.007 and E2 C(T (p<0.0001, respectively, each normalized with ACTB C(T, among episomal cases only. The k-means clustering analysis considering E7 C(T from APOT-coupled-quantitative-RT-PCR assay, in conjunction with viral load, revealed immense heterogeneity among the HPV16 positive CaCx cases portraying integrated viral genomes. The findings provide novel insights into HPV16 related CaCx pathogenesis and highlight that CaCx cases that harbour episomal HPV16 genomes with intact E2 are likely to be distinct biologically, from the purely integrated viral genomes in terms of host genes and/or pathways involved in cervical

  14. Mid-Adolescent Predictors of Adult Drinking Levels in Early Adulthood and Gender Differences: Longitudinal Analyses Based on the South Australian School Leavers Study.

    Science.gov (United States)

    Delfabbro, Paul H; Winefield, Helen R; Winefield, Anthony H; Hammarström, Anne

    2016-01-01

    There is considerable public health interest in understanding what factors during adolescence predict longer-term drinking patterns in adulthood. The aim of this study was to examine gender differences in the age 15 social and psychological predictors of less healthy drinking patterns in early adulthood. The study investigates the relative importance of internalising problems, other risky health behaviours, and peer relationships after controlling for family background characteristics. A sample of 812 young people who provided complete alcohol consumption data from the age of 15 to 20 years (5 measurement points) were drawn from South Australian secondary schools and given a detailed survey concerning their psychological and social wellbeing. Respondents were classified into two groups based upon a percentile division: those who drank at levels consistently below NHMRC guidelines and those who consistently drank at higher levels. The results showed that poorer age 15 scores on measures of psychological wellbeing including scores on the GHQ-12, self-esteem, and life-satisfaction as well as engagement in health-related behaviours such as smoking or drug-taking were associated with higher drinking levels in early adulthood. The pattern of results was generally similar for both genders. Higher drinking levels were most strongly associated with smoking and marijuana use and poorer psychological wellbeing during adolescence. PMID:27635278

  15. Model-based analyses of whole-genome data reveal a complex evolutionary history involving archaic introgression in Central African Pygmies.

    Science.gov (United States)

    Hsieh, PingHsun; Woerner, August E; Wall, Jeffrey D; Lachance, Joseph; Tishkoff, Sarah A; Gutenkunst, Ryan N; Hammer, Michael F

    2016-03-01

    Comparisons of whole-genome sequences from ancient and contemporary samples have pointed to several instances of archaic admixture through interbreeding between the ancestors of modern non-Africans and now extinct hominids such as Neanderthals and Denisovans. One implication of these findings is that some adaptive features in contemporary humans may have entered the population via gene flow with archaic forms in Eurasia. Within Africa, fossil evidence suggests that anatomically modern humans (AMH) and various archaic forms coexisted for much of the last 200,000 yr; however, the absence of ancient DNA in Africa has limited our ability to make a direct comparison between archaic and modern human genomes. Here, we use statistical inference based on high coverage whole-genome data (greater than 60×) from contemporary African Pygmy hunter-gatherers as an alternative means to study the evolutionary history of the genus Homo. Using whole-genome simulations that consider demographic histories that include both isolation and gene flow with neighboring farming populations, our inference method rejects the hypothesis that the ancestors of AMH were genetically isolated in Africa, thus providing the first whole genome-level evidence of African archaic admixture. Our inferences also suggest a complex human evolutionary history in Africa, which involves at least a single admixture event from an unknown archaic population into the ancestors of AMH, likely within the last 30,000 yr.

  16. VH Replacement Footprint Analyzer-I, a Java-Based Computer Program for Analyses of Immunoglobulin Heavy Chain Genes and Potential VH Replacement Products in Human and Mouse.

    Science.gov (United States)

    Huang, Lin; Lange, Miles D; Zhang, Zhixin

    2014-01-01

    VH replacement occurs through RAG-mediated secondary recombination between a rearranged VH gene and an upstream unrearranged VH gene. Due to the location of the cryptic recombination signal sequence (cRSS, TACTGTG) at the 3' end of VH gene coding region, a short stretch of nucleotides from the previous rearranged VH gene can be retained in the newly formed VH-DH junction as a "footprint" of VH replacement. Such footprints can be used as markers to identify Ig heavy chain (IgH) genes potentially generated through VH replacement. To explore the contribution of VH replacement products to the antibody repertoire, we developed a Java-based computer program, VH replacement footprint analyzer-I (VHRFA-I), to analyze published or newly obtained IgH genes from human or mouse. The VHRFA-1 program has multiple functional modules: it first uses service provided by the IMGT/V-QUEST program to assign potential VH, DH, and JH germline genes; then, it searches for VH replacement footprint motifs within the VH-DH junction (N1) regions of IgH gene sequences to identify potential VH replacement products; it can also analyze the frequencies of VH replacement products in correlation with publications, keywords, or VH, DH, and JH gene usages, and mutation status; it can further analyze the amino acid usages encoded by the identified VH replacement footprints. In summary, this program provides a useful computation tool for exploring the biological significance of VH replacement products in human and mouse.

  17. Lack of Spatial Subdivision for the Snapper Lutjanus purpureus (Lutjanidae – Perciformes) from Southwest Atlantic Based on Multi-Locus Analyses

    Science.gov (United States)

    Sampaio, Iracilda; Schneider, Horacio

    2016-01-01

    The Caribbean snapper Lutjanus purpureus is a marine species fish commonly found associated with rocky seabeds and is widely distributed along of Western Atlantic. Data on stock delineation and stock recognition are essential for establishing conservation measures for commercially fished species. However, few studies have investigated the population genetic structure of this economically valuable species, and previous studies (based on only a portion of the mitochondrial DNA) provide an incomplete picture. The present study used a multi-locus approach (12 segments of mitochondrial and nuclear DNA) to elucidate the levels of genetic diversity and genetic connectivity of L. purpureus populations and their demographic history. L. purpureus has high levels of genetic diversity, which probably implies in high effective population sizes values for the species. The data show that this species is genetically homogeneous throughout the geographic region analyzed, most likely as a result of dispersal during larval phase. Regarding demographic history, a historical population growth event occurred, likely due to sea level changes during the Pleistocene. PMID:27556738

  18. Rasch-family models are more valuable than score-based approaches for analysing longitudinal patient-reported outcomes with missing data.

    Science.gov (United States)

    de Bock, Elodie; Hardouin, Jean-Benoit; Blanchin, Myriam; Le Neel, Tanguy; Kubis, Gildas; Bonnaud-Antignac, Angélique; Dantan, Etienne; Sébille, Véronique

    2013-12-16

    The objective was to compare classical test theory and Rasch-family models derived from item response theory for the analysis of longitudinal patient-reported outcomes data with possibly informative intermittent missing items. A simulation study was performed in order to assess and compare the performance of classical test theory and Rasch model in terms of bias, control of the type I error and power of the test of time effect. The type I error was controlled for classical test theory and Rasch model whether data were complete or some items were missing. Both methods were unbiased and displayed similar power with complete data. When items were missing, Rasch model remained unbiased and displayed higher power than classical test theory. Rasch model performed better than the classical test theory approach regarding the analysis of longitudinal patient-reported outcomes with possibly informative intermittent missing items mainly for power. This study highlights the interest of Rasch-based models in clinical research and epidemiology for the analysis of incomplete patient-reported outcomes data. PMID:24346165

  19. Elaboration, analyse et modélisation mécanique numérique d’agro-composites à base de fibres courtes d’alfa

    Directory of Open Access Journals (Sweden)

    El-Abbassi Fatima-ezzahra

    2014-04-01

    Full Text Available Dans la présente étude, récemment réalisée au Laboratoire d’Ingénierie et Sciences des Matériaux, de l’Université de Reims Champagne-Ardenne, nous proposons de valoriser la plante végétale d’Alfa, sous forme de fibres courtes en vue de renforcer par extrusion dans une première étape, puis par injection, des matrices polymères, en l’occurrence le Polypropylène (PP. Une première étape consiste à élaborer, par traitement chimique et extraction, la fibre courte à utiliser comme renfort. Il s’en suit une extrusion de courte à utiliser comme renfort. Il s’en suit une extrusion de composés composites à base de matrice PP. L’objectif sera de développer par la suite une démarche Essai-Calcul, confrontant une caractérisation mécanique d’agrocomposites PP-Alfa injectés à deux types de modélisation comportementale, l’une micromécanique basée sur le modèle de Mori-Tanaka, et l’autre numérique utilisant une approche originale basée sur une technique dite de fibre projetée.

  20. Electricity generation analyses in an oil-exporting country: Transition to non-fossil fuel based power units in Saudi Arabia

    International Nuclear Information System (INIS)

    In Saudi Arabia, fossil-fuel is the main source of power generation. Due to the huge economic and demographic growth, the electricity consumption in Saudi Arabia has increased and should continue to increase at a very fast rate. At the moment, more than half a million barrels of oil per day is used directly for power generation. Herein, we assess the power generation situation of the country and its future conditions through a modelling approach. For this purpose, we present the current situation by detailing the existing generation mix of electricity. Then we develop a optimization model of the power sector which aims to define the best production and investment pattern to reach the expected demand. Subsequently, we will carry out a sensitivity analysis so as to evaluate the robustness of the model's by taking into account the integration variability of the other alternative (non-fossil fuel based) resources. The results point out that the choices of investment in the power sector strongly affect the potential oil's exports of Saudi Arabia. (authors)

  1. Analysing the fate of nanopesticides in soil and the applicability of regulatory protocols using a polymer-based nanoformulation of atrazine.

    Science.gov (United States)

    Kah, Melanie; Machinski, Patrick; Koerner, Petra; Tiede, Karen; Grillo, Renato; Fraceto, Leonardo Fernandes; Hofmann, Thilo

    2014-10-01

    For the first time, regulatory protocols defined in the OECD guidelines were applied to determine the fate properties of a nanopesticide in two agricultural soils with contrasting characteristics. The nanoformulation studied had no effect on the degradation kinetics of atrazine indicating that (1) the release of atrazine from the polymer nanocarriers occurred rapidly relative to the degradation kinetics (half-lives 36-53 days) and/or that (2) atrazine associated with the nanocarriers was subject to biotic or abiotic degradation. Sorption coefficients, derived from a batch and a centrifugation technique at a realistic soil-to-solution ratio, were higher for the nanoformulated atrazine than for the pure active ingredient. Results indicate that the nanoformulation had an effect on the fate of atrazine. However, since the protocols applied were designed to assess solutes, conclusions about the transport of atrazine loaded onto the nanocarriers should be made extremely cautiously. The centrifugation method applied over time (here over 7 days) appears to be a useful tool to indirectly assess the durability of nanopesticides under realistic soil-to-solution ratios and estimate the period of time during which an influence on the fate of the active ingredient may be expected. More detailed investigations into the bioavailability and durability of nanopesticides are necessary and will require the development of novel methods suitable to address both the "nano" and "organic" characteristics of polymer-based nanopesticides.

  2. European UV DataBase (EUVDB) as a repository and quality analyser for solar spectral UV irradiance monitored in Sodankylä

    Science.gov (United States)

    Heikkilä, Anu; Kaurola, Jussi; Lakkala, Kaisa; Matti Karhu, Juha; Kyrö, Esko; Koskela, Tapani; Engelsen, Ola; Slaper, Harry; Seckmeyer, Gunther

    2016-08-01

    Databases gathering atmospheric data have great potential not only as data storages but also in serving as platforms for coherent quality assurance (QA). We report on the flagging system and QA tools designed for and implemented in the European UV DataBase (EUVDB; http://uv.fmi.fi/uvdb/) for measured data on solar spectral UV irradiance. We confine the study on the data measured by Brewer #037 MkII spectroradiometer in Sodankylä (67.37° N, 26.63° E) in 1990-2014. The quality indicators associated with the UV irradiance spectra uploaded into the database are retrieved from the database and subjected to a statistical analysis. The study demonstrates the performance of the QA tools of the EUVDB. In addition, it yields an overall view of the availability and quality of the solar UV spectra recorded in Sodankylä over a quarter of a century. Over 90 % of the four main quality indicators are flagged as GREEN, indicating the highest achievable quality. For the BLACK flags, denoting data not meeting the pre-defined requirements, the percentages for all the indicators remain below 0.12 %.

  3. Mid-Adolescent Predictors of Adult Drinking Levels in Early Adulthood and Gender Differences: Longitudinal Analyses Based on the South Australian School Leavers Study

    Science.gov (United States)

    Winefield, Helen R.; Hammarström, Anne

    2016-01-01

    There is considerable public health interest in understanding what factors during adolescence predict longer-term drinking patterns in adulthood. The aim of this study was to examine gender differences in the age 15 social and psychological predictors of less healthy drinking patterns in early adulthood. The study investigates the relative importance of internalising problems, other risky health behaviours, and peer relationships after controlling for family background characteristics. A sample of 812 young people who provided complete alcohol consumption data from the age of 15 to 20 years (5 measurement points) were drawn from South Australian secondary schools and given a detailed survey concerning their psychological and social wellbeing. Respondents were classified into two groups based upon a percentile division: those who drank at levels consistently below NHMRC guidelines and those who consistently drank at higher levels. The results showed that poorer age 15 scores on measures of psychological wellbeing including scores on the GHQ-12, self-esteem, and life-satisfaction as well as engagement in health-related behaviours such as smoking or drug-taking were associated with higher drinking levels in early adulthood. The pattern of results was generally similar for both genders. Higher drinking levels were most strongly associated with smoking and marijuana use and poorer psychological wellbeing during adolescence. PMID:27635278

  4. Mid-Adolescent Predictors of Adult Drinking Levels in Early Adulthood and Gender Differences: Longitudinal Analyses Based on the South Australian School Leavers Study

    Directory of Open Access Journals (Sweden)

    Paul H. Delfabbro

    2016-01-01

    Full Text Available There is considerable public health interest in understanding what factors during adolescence predict longer-term drinking patterns in adulthood. The aim of this study was to examine gender differences in the age 15 social and psychological predictors of less healthy drinking patterns in early adulthood. The study investigates the relative importance of internalising problems, other risky health behaviours, and peer relationships after controlling for family background characteristics. A sample of 812 young people who provided complete alcohol consumption data from the age of 15 to 20 years (5 measurement points were drawn from South Australian secondary schools and given a detailed survey concerning their psychological and social wellbeing. Respondents were classified into two groups based upon a percentile division: those who drank at levels consistently below NHMRC guidelines and those who consistently drank at higher levels. The results showed that poorer age 15 scores on measures of psychological wellbeing including scores on the GHQ-12, self-esteem, and life-satisfaction as well as engagement in health-related behaviours such as smoking or drug-taking were associated with higher drinking levels in early adulthood. The pattern of results was generally similar for both genders. Higher drinking levels were most strongly associated with smoking and marijuana use and poorer psychological wellbeing during adolescence.

  5. Modelling software failures of digital I and C in probabilistic safety analyses based on the TELEPERM {sup registered} XS operating experience

    Energy Technology Data Exchange (ETDEWEB)

    Jockenhoevel-Barttfeld, Mariana; Taurines Andre [AREVA GmbH, Erlangen (Germany); Baeckstroem, Ola [Lloyd Register Consulting, Stockholm (Sweden); Holmberg, Jan-Erik [Risk Pilot, Espoo (Finland); Porthin, Markus; Tyrvaeinen, Tero [VTT Technical Research Centre of Finland Ltd, Espoo (Finland)

    2015-03-15

    Digital instrumentation and control (I and C) systems appear as upgrades in existing nuclear power plants (NPPs) and in new plant designs. In order to assess the impact of digital system failures, quantifiable reliability models are needed along with data for digital systems that are compatible with existing probabilistic safety assessments (PSA). The paper focuses on the modelling of software failures of digital I and C systems in probabilistic assessments. An analysis of software faults, failures and effects is presented to derive relevant failure modes of system and application software for the PSA. The estimations of software failure probabilities are based on an analysis of the operating experience of TELEPERM {sup registered} XS (TXS). For the assessment of application software failures the analysis combines the use of the TXS operating experience at an application function level combined with conservative engineering judgments. Failure probabilities to actuate on demand and of spurious actuation of typical reactor protection application are estimated. Moreover, the paper gives guidelines for the modelling of software failures in the PSA. The strategy presented in this paper is generic and can be applied to different software platforms and their applications.

  6. A new system for parallel drug screening against multiple-resistant HIV mutants based on lentiviral self-inactivating (SIN vectors and multi-colour analyses

    Directory of Open Access Journals (Sweden)

    Prokofjeva Maria M

    2013-01-01

    Full Text Available Abstract Background Despite progress in the development of combined antiretroviral therapies (cART, HIV infection remains a significant challenge for human health. Current problems of cART include multi-drug-resistant virus variants, long-term toxicity and enormous treatment costs. Therefore, the identification of novel effective drugs is urgently needed. Methods We developed a straightforward screening approach for simultaneously evaluating the sensitivity of multiple HIV gag-pol mutants to antiviral drugs in one assay. Our technique is based on multi-colour lentiviral self-inactivating (SIN LeGO vector technology. Results We demonstrated the successful use of this approach for screening compounds against up to four HIV gag-pol variants (wild-type and three mutants simultaneously. Importantly, the technique was adapted to Biosafety Level 1 conditions by utilising ecotropic pseudotypes. This allowed upscaling to a large-scale screening protocol exploited by pharmaceutical companies in a successful proof-of-concept experiment. Conclusions The technology developed here facilitates fast screening for anti-HIV activity of individual agents from large compound libraries. Although drugs targeting gag-pol variants were used here, our approach permits screening compounds that target several different, key cellular and viral functions of the HIV life-cycle. The modular principle of the method also allows the easy exchange of various mutations in HIV sequences. In conclusion, the methodology presented here provides a valuable new approach for the identification of novel anti-HIV drugs.

  7. The R Protein of SARS-CoV: Analyses of Structure and Function Based on Four Complete Genome Sequences of Isolates BJ01-BJ04

    Institute of Scientific and Technical Information of China (English)

    Zuyuan Xu; Zizhang Zhang; Jing Xu; Wei Wei; Jingui Zhu; Haiyan Sun; Xiaowei Zhang; Jun Zhou; Songgang Li; Jun Wang; Jian Wang; Haiqing Zhang; Shengli Bi; Huanming Yang; Xiangjun Tian; Jia Ji; Wei Li; Yan Li; Wei Tian; Yujun Han; Lili Wang

    2003-01-01

    The R (replicase) protein is the uniquely defined non-structural protein (NSP)responsible for RNA replication, mutation rate or fidelity, regulation of transcrip-tion in coronaviruses and many other ssRNA viruses. Based on our completegenome sequences of four isolates (BJ01-BJ04) of SARS-CoV from Beijing, China,we analyzed the structure and predicted functions of the R protein in comparisonwith 13 other isolates of SARS-CoV and 6 other coronaviruses. The entire ORF(open-reading frame) encodes for two major enzyme activities, RNA-dependentRNA polymerase (RdRp) and proteinase activities. The R polyprotein under-goes a complex proteolytic process to produce 15 function-related peptides. Ahydrophobic domain (HOD) and a hydrophilic domain (HID) are newly identifiedwithin NSP1. The substitution rate of the R protein is close to the average ofthe SARS-CoV genome. The functional domains in all NSPs of the R proteingive different phylogenetic results that suggest their different mutation rate underselective pressure. Eleven highly conserved regions in RdRp and twelve cleavagesites by 3CLP (chymotrypsin-like protein) have been identified as potential drugtargets. Findings suggest that it is possible to obtain information about the phy-logeny of SARS-CoV, as well as potential tools for drug design, genotyping anddiagnostics of SARS.

  8. Nature and origin of the hematite-bearing plains of Terra Meridiani based on analyses of orbital and Mars Exploration rover data sets

    Science.gov (United States)

    Arvidson, R. E.; Poulet, F.; Morris, R.V.; Bibring, J.-P.; Bell, J.F.; Squyres, S. W.; Christensen, P.R.; Bellucci, G.; Gondet, B.; Ehlmann, B.L.; Farrand, W. H.; Fergason, R.L.; Golombeck, M.; Griffes, J.L.; Grotzinger, J.; Guinness, E.A.; Herkenhoff, K. E.; Johnson, J. R.; Klingelhofer, G.; Langevin, Y.; Ming, D.; Seelos, K.; Sullivan, R.J.; Ward, J.G.; Wiseman, S.M.; Wolff, M.J.

    2006-01-01

    The ???5 km of traverses and observations completed by the Opportunity rover from Endurance crater to the Fruitbasket outcrop show that the Meridiani plains consist of sulfate-rich sedimentary rocks that are largely covered by poorly-sorted basaltic aeolian sands and a lag of granule-sized hematitic concretions. Orbital reflectance spectra obtained by Mars Express OMEGA over this region are dominated by pyroxene, plagioclase feldspar, crystalline hematite (i.e., concretions), and nano-phase iron oxide dust signatures, consistent with Pancam and Mini-TES observations. Mo??ssbauer Spectrometer observations indicate more olivine than observed with the other instruments, consistent with preferential optical obscuration of olivine features in mixtures with pyroxene and dust. Orbital data covering bright plains located several kilometers to the south of the landing site expose a smaller areal abundance of hematite, more dust, and a larger areal extent of outcrop compared to plains proximal to the landing site. Low-albedo, low-thermal-inertia, windswept plains located several hundred kilometers to the south of the landing site are predicted from OMEGA data to have more hematite and fine-grained olivine grains exposed as compared to the landing site. Low calcium pyroxene dominates spectral signatures from the cratered highlands to the south of Opportunity. A regional-scale model is presented for the formation of the plains explored by Opportunity, based on a rising ground water table late in the Noachian Era that trapped and altered local materials and aeolian basaltic sands. Cessation of this aqueous process led to dominance of aeolian processes and formation of the current configuration of the plains. Copyright 2006 by the American Geophysical Union.

  9. Electricity generation analyses in an oil-exporting country: Transition to non-fossil fuel based power units in Saudi Arabia

    International Nuclear Information System (INIS)

    In Saudi Arabia, fossil-fuel is the main source of power generation. Due to the huge economic and demographic growth, the electricity consumption in Saudi Arabia has increased and should continue to increase at a very fast rate. At the moment, more than half a million barrels of oil per day is used directly for power generation. Herein, we assess the power generation situation of the country and its future conditions through a modelling approach. For this purpose, we present the current situation by detailing the existing generation mix of electricity. Then we develop an optimization model of the power sector which aims to define the best production and investment pattern to reach the expected demand. Subsequently, we will carry out a sensitivity analysis so as to evaluate the robustness of the model's by taking into account the integration variability of the other alternative (non-fossil fuel based) resources. The results point out that the choices of investment in the power sector strongly affect the potential oil's exports of Saudi Arabia. For instance, by decarbonizing half of its generation mix, Saudi Arabia can release around 0.5 Mb/d barrels of oil equivalent per day from 2020. Moreover, total power generation cost reduction can reach up to around 28% per year from 2030 if Saudi Arabia manages to attain the most optimal generation mix structure introduced in the model (50% of power from renewables and nuclear power plants and 50% from the fossil power plants). - Highlights: • We model the current and future power generation situation of Saudi Arabia. • We take into account the integration of the other alternative resources. • We consider different scenarios of power generation structure for the country. • Optimal generation mix can release considerable amount of oil for export

  10. SPIDIA-RNA: second external quality assessment for the pre-analytical phase of blood samples used for RNA based analyses.

    Directory of Open Access Journals (Sweden)

    Francesca Malentacchi

    Full Text Available One purpose of the EC funded project, SPIDIA, is to develop evidence-based quality guidelines for the pre-analytical handling of blood samples for RNA molecular testing. To this end, two pan-European External Quality Assessments (EQAs were implemented. Here we report the results of the second SPIDIA-RNA EQA. This second study included modifications in the protocol related to the blood collection process, the shipping conditions and pre-analytical specimen handling for participants. Participating laboratories received two identical proficiency blood specimens collected in tubes with or without an RNA stabilizer. For pre-defined specimen storage times and temperatures, laboratories were asked to perform RNA extraction from whole blood according to their usual procedure and to return extracted RNA to the SPIDIA facility for further analysis. These RNA samples were evaluated for purity, yield, integrity, stability, presence of interfering substances, and gene expression levels for the validated markers of RNA stability: FOS, IL1B, IL8, GAPDH, FOSB and TNFRSF10c. Analysis of the gene expression results of FOS, IL8, FOSB, and TNFRSF10c, however, indicated that the levels of these transcripts were significantly affected by blood collection tube type and storage temperature. These results demonstrated that only blood collection tubes containing a cellular RNA stabilizer allowed reliable gene expression analysis within 48 h from blood collection for all the genes investigated. The results of these two EQAs have been proposed for use in the development of a Technical Specification by the European Committee for Standardization.

  11. Website-analyse

    DEFF Research Database (Denmark)

    Thorlacius, Lisbeth

    2009-01-01

    planlægning af de funktionelle og indholdsmæssige aspekter ved websites. Der findes en stor mængde teori- og metodebøger, som har specialiseret sig i de tekniske problemstillinger i forbindelse med interaktion og navigation, samt det sproglige indhold på websites. Den danske HCI (Human Computer Interaction...... hyperfunktionelle websites. Det primære ærinde for HCI-eksperterne er at udarbejde websites, som er brugervenlige. Ifølge deres direktiver skal websites være opbygget med hurtige og effektive navigations- og interaktionsstrukturer, hvor brugeren kan få sine informationer ubesværet af lange downloadingshastigheder...... eller blindgyder, når han/hun besøger sitet. Studier i design og analyse af de visuelle og æstetiske aspekter i planlægning og brug af websites har imidlertid kun i et begrænset omfang været under reflektorisk behandling. Det er baggrunden for dette kapitel, som indleder med en gennemgang af æstetikkens...

  12. Characteristics and Origin of a Cratered Unit near the MSL Bradbury Landing Site (Gale Crater, Mars) Based on Analyses of Surface Data and Orbital Images

    Science.gov (United States)

    Jacob, S.; Rowland, S. K.; Edgett, K. S.; Kah, L. C.; Wiens, R. C.; Day, M. D.; Calef, F.; Palucis, M. C.; Anderson, R. B.

    2014-12-01

    Using orbiter images, the Curiosity landing ellipse was mapped as six distinct units based mainly on geomorphic characteristics. These units are the alluvial fan material (ALF), fractured light-toned surface (FLT), cratered plains/surfaces (CS), smooth hummocky plains (SH), rugged unit (RU) and striated light-toned outcrops (SLT) (Grotzinger et al., 2014; DOI: 10.1126/science.1242777). The goal of this project was to characterize and determine the origin of the CS. The CS is a thin, nearly horizontal, erosion resistant capping unit. HiRISE mosaics were utilized to subdivide the CS into four geomorphic sub-units. Crater densities were calculated for each sub-unit to provide a quantifiable parameter that could aid in understanding how the sub-units differ. Mastcam images from many locations along Curiosity's traverse show fields of dark, massive boulders, which are presumably erosional remnants of the CS. This indicates that the CS was likely more laterally extensive in the past. In situ CS outcrops, seen at Shaler and multiple locations near the Zabriskie Plateau, appear to have a rough, wind-sculpted surface and may consist of two distinct lithologies. The lower lithology displays hints of layering that have been enhanced by differential weathering, whereas the upper lithology consists of dark, massive rock. When present, the outcrops can extend laterally for several meters, but Mastcam images of outcrops do not always reveal both sections. ChemCam data show that CS targets have concentrations of Al, Na, and K that are indicative of an alkali feldspar phase. The physical and chemical characteristics of the CS suggest a massive deposit that has seen little to no chemical alteration. Physical characteristics of the CS do not allow us to unambiguously determine its geologic origin; possible emplacement mechanisms would require the ability to spread laterally over a nearly horizontal surface, and include inflating lava (e.g., pāhoehoe) or a distal delta deposit. The

  13. 基于自然单元法的极限上限分析%UPPER-BOUND LIMIT ANALYSES BASED ON NATURAL ELEMENT METHOD

    Institute of Scientific and Technical Information of China (English)

    周书涛; 刘应华; 陈莘莘

    2012-01-01

    The natural element method (NEM) is a novel numerical method based on voronoi diagram and delaunay triangulation of the scattered points in problem domain,and its shape function is built upon the notion of natural neighbor interpolation. Compared with the moving least square (MLS) approximation used widely in many meshless methods,natural neighbor interpolation does not involve the complex matrix inversion,needs no artificial parameter but can improve the computational efficiency. The obtained shape function satisfies the property of Kronecker delta function, and this character results in the consequence that the essential boundary condition can be easily imposed as in finite element method (FEM). Meanwhile, the problems with discontinuous field functions likewise their discontinuous derivatives can be conveniently treated. According to the kinematic theorem of plastic limit analysis,this article applies the natural element method to upper bound limit analysis. The corresponding mathematical programming formulations are established and the computational codes are implemented to solve them. Several classical examples of limit analysis are adopted to verify the performance of these codes. Furthermore,the smoothing operations are also provided to calculate plastic dissipation work on the nodes by the similar treatment of stress smoothing operation,and the contours of plastic dissipation work at the limit states are displayed. The computational results show that utilizing natural element method to solve upper bound limit analysis problems possesses the advantage of good stability,high accuracy and fast convergence.%自然单元法是一种基于离散点集的Voronoi图和Delaunay三角化几何信息,以自然邻近插值为试函数的新型数值方法.相对于一般无网格法中常采用的移动最小二乘近似而言,自然邻近插值不涉及到复杂的矩阵求逆运算,更不需要任何人为的参数,可以提高计算效率.采用该方法构造的

  14. Cost-Benefit Analyses of Transportation Investments

    DEFF Research Database (Denmark)

    Næss, Petter

    2006-01-01

    This paper discusses the practice of cost-benefit analyses of transportation infrastructure investment projects from the meta-theoretical perspective of critical realism. Such analyses are based on a number of untenable ontological assumptions about social value, human nature and the natural......-to-pay investigations. Accepting the ontological and epistemological assumptions of cost-benefit analysis involves an implicit acceptance of the ethical and political values favoured by these assumptions. Cost-benefit analyses of transportation investment projects tend to neglect long-term environmental consequences...... and needs among population groups with a low ability to pay. Instead of cost-benefit analyses, impact analyses evaluating the likely effects of project alternatives against a wide range of societal goals is recommended, with quantification and economic valorisation only for impact categories where this can...

  15. 一种基于离散对数的强代理签名方案的分析与改进%ANALYSING A DISCRETE LOGARITHM-BASED STRONG PROXY SIGNATURE SCHEME AND ITS IMPROVEMENT

    Institute of Scientific and Technical Information of China (English)

    张兴华

    2014-01-01

    In this paper we analyse in detail the existing discrete logarithm problem-based strong proxy signature schemes,and find that these schemes have the defects of not being able to resist the public key substitution attack,and we provide the attacking methods as well. Based on the difficulty of discrete logarithm and Schnorr system,we present a new strong proxy signature scheme by improving the signature algorithm.We elaborately analyse the new scheme in its capabilities of resisting the public key substitution attack and limiting the range of proxy signature and the signature time.The new scheme has stronger practicability and security.%详细分析现有的基于离散对数问题的强代理签名方案,发现方案存在不能抵抗公钥替换攻击的缺陷,并给出攻击方法。基于离散对数的困难性和Schnorr体制,通过签名算法的改进,给出一种新的强代理签名方案。重点分析新方案可以抵抗公钥替换攻击,可以对代理签名的范围和签名时间进行限制等。该方案的实用性及安全性更强。

  16. The psychological status of phonological analyses

    Directory of Open Access Journals (Sweden)

    David Eddington

    2015-09-01

    Full Text Available This paper casts doubt on the psychological relevance of many phonological analyses. There are four reasons for this: 1 theoretical adequacy does not necessarily imply psychological significance; 2 most approaches are nonempirical in that they are not subject to potential spatiotemporal falsification; 3 phonological analyses are estab­ lished with little or no recourse to the speakers of the language via experimental psy­ chology; 4 the limited base of evidence which most analyses are founded on is further cause for skepticism.

  17. 基于VbMoICA的机械故障盲源分离研究%Blind separation of mechanical fault sources based on variational Bayesian mixture of independent component analysers

    Institute of Scientific and Technical Information of China (English)

    岳秀廷; 李志农; 陈金刚

    2012-01-01

    用独立分量分析(ICA)分解和表示数据时,假设整个数据分布完全可以用一个坐标系来描述.然而,当观测数据是由许多自相似的、非高斯的流形组成时,则硬是用一个单独的、全局的表示是不合适的,这样会产生一个次优的表示.针对ICA在盲源分离中的不足,在变分贝叶斯理论的基础上提出了一种基于变分贝叶斯混合独立分量分析的机械故障源盲分离方法.该方法是考虑到源信号来自于多个坐标系,然后在多个坐标系下建立独立分量分析混合模型对观测信号进行学习分离.实验结果表明,本文提出的方法是非常有效的.%Decomposing and representing data using independent component analysers(ICA)assumes that the whole data distribution is adequately described by one coordinate frame.However,if the observed data consists of various self-similar,non-Gaussian manifolds, enforcing a single, global representation is not appropriate and will produce a sub-optimal representation.In order to make up the lack of independent component analyser in blind sources separations, blind separation of mechanical fault sources based on variational Bayesian mixture of independent component analysers is presented based on variational Bayesian theory in this paper.Conside.ring the source signals coming from multiple frames, the method creats a mixture model of independent component analysers in multiple frameworks for learning the observed signals and separating thenuThe experimental results show that the method proposed in this paper is very effective.

  18. ENSO Indices and Analyses

    Institute of Scientific and Technical Information of China (English)

    WANG Zhiren; WU Dexing; CHEN Xue'en; QIAO Ran

    2013-01-01

    New ENSO indices were developed and the spatial variability and temporal evolution of ENSO were analyzed based on the new indices and modeling experiments,as well as multiple data resources.The new indices,after being defined,were validated with their good diagnostic characteristics and correlation with wind and SST.In the analysis after the definition and validation of the new indices,ENSO feedbacks from wind,heat fluxes,and precipitation were spatially and temporally examined in order to understand ENSO variability and evolution with some emphasized points such as the interaction among the feedbacks,the role of westerly wind bursts and the transformation between zonal and meridional circulations in an ENSO cycle,and the typical pattern of modern ENSO.

  19. Analysis of climatically relevant processes in the troposphere using ground-based remote measuring methods (windprofiler/RASS). Final report; Analyse klimatisch relevanter Prozesse in der Troposphaere mit Hilfe bodengebundener Fernerkundungsmethoden (Windprofiler/RASS). Abschlussbericht

    Energy Technology Data Exchange (ETDEWEB)

    Steinhagen, H.; Christoph, A.; Engelbart, D.; Goersdorf, U.; Hirsch, L.; Lippmann, J.; Neisser, J.; Wergen, W.

    1995-09-01

    In the framework of the present research project the Meterological Observatory of Lindenberg (MOL) was equipped with the scientific and technical means necessary for the future operational application at the German weather service of ground-based remote sounding technologies such as `windprofiler radar`, radio-acoustic sounding system (RASS). Several case studies were used to demonstrate the multifarious possibilities of analysing mesoscale tropospheric structures by means of windprofiler radar and RASS. Besides this, further information such as mixing layer thickness and heat flux were derived from windprofiler and RASS measurements and the applied algorithms were tried on case examples. (orig./AKF) [Deutsch] Im Rahmen dieses Forschungsvorhabens sind am Meteorologischen Observatorium Lindenberg (MOL) wissenschaftliche und technische Voraussetzungen fuer eine zukuenftige operationelle Anwendung aktiver bodengebundener Fernsondierungstechnologien, wie `Windprofiler-Radar` und `Radio-Akustisches-Sondierungs-System (RASS)` im Deutschen Wetterdienst geschaffen worden. An Hand mehrerer Fallstudien wurden die vielfaeltigen Moeglichkeiten zur Analyse mesoskaliger troposphaerischer Strukturen mit Windprofiler-Radar und RASS demonstriert. Darueber hinaus wurden aus Windprofiler-/RASS-Messungen weiterfuehrende Informationen, wie Mischungsschichthoehe und Waermefluss abgeleitet und die entsprechenden Algorithmen am Fallbeispielen erprobt. (orig./AKF)

  20. Cost-effectiveness and cost-utility analyses of hospital-based home care compared to hospital-based care for children diagnosed with type 1 diabetes; a randomised controlled trial; results after two years’ follow-up

    OpenAIRE

    Tiberg, Irén; Lindgren, Björn; Carlsson, Annelie; Hallström, Inger

    2016-01-01

    Background Practices regarding hospitalisation of children at diagnosis of type 1 diabetes vary both within countries and internationally, and high-quality evidence of best practice is scarce. The objective of this study was to close some of the gaps in evidence by comparing two alternative regimens for children diagnosed with type 1 diabetes: hospital-based care and hospital-based home care (HBHC), referring to specialist care in a home-based setting. Methods A randomised controlled trial, i...

  1. The Static Stiffness Analyses for Vertical Prop and Base of CK5116 CNC Vertical Lathe%CK5116数控立式车床立柱和底座静刚度分析

    Institute of Scientific and Technical Information of China (English)

    黄建龙; 柴少峰; 赵维龙; 汪孝林; 舒海燕

    2012-01-01

    对CK5116数控立式车床的立柱和底座进行受力分析,得到3种不同的力学模型.依据不同的力学模型在Solid-Works中建立三维模型,在有限元软件ANSYS中进行仿真,得到不同模型在试验工况下的变形和应力.根据不同模型的变形和应力结果找出立柱和底座的薄弱环节,提出设计时加强y方向刚度的建议.%Force analyses about vertical prop and base of CK5116 CNC vertical lathe were made to get three different mechanical models. Based on the mechanical models, three-dimensional models were created in SolidWorks and ANSYS software was used for simulation. Deformation and stress of different models in the test conditions were obtained. According to the deformation and stress of different models, weak links in the vertical prop and base were found. A suggestion was proposed that the stiffness of y direction should be enhanced when designing.

  2. ANALYSING AND EVALUATING I/O PERFORMANCE OF OBJECT-BASED FILE SYSTEMS%基于对象的文件系统I/O分析与评测

    Institute of Scientific and Technical Information of China (English)

    胡永奎; 杜祝平; 方圆

    2011-01-01

    Currently, most of the object-based storage devices adopt universal file system such as EXT2 and EXT3 to manage, but are facing the problem of effectual storage and management against massive data. The object-based file systems realise to organise the objects in the disk area according to their size,and introduce the mechanisms of Hash and WorstFit, which improves the utility rate of the disk and observably raises its throughput rate at the same time. In this paper we test and analyse the L/O performances of EXT2, EXT3 and object-based file systems. Experimental results show that the I/O performance of the object-based file systems is two or three times of that of the EXT2 and EXT3.%目前基于对象的存储设备中多采用通用的文件系统如EXT2、EXT3等进行管理,但面临着对海量数据的高效存储、管理问题.基于对象的文件系统实现了对象按大小在磁盘区域中组织管理,并采用了Hash、最坏适应等机制,提高磁盘利用率的同时显著提升了磁盘吞吐率.对EXT2、EXT3、基于对象的文件系统进行了L/O性能测试及分析.实验表明,基于对象的文件系统的I/O性能是EXT2、EXT3文件系统的2到3倍.

  3. A gamma model for {DNA} mixture analyses

    OpenAIRE

    Cowell, R. G.; Lauritzen, S L; Mortera, J.

    2007-01-01

    We present a new methodology for analysing forensic identification problems involving DNA mixture traces where several individuals may have contributed to the trace. The model used for identification and separation of DNA mixtures is based on a gamma distribution for peak area values. In this paper we illustrate the gamma model and apply it on several real examples from forensic casework.

  4. Comparing functional annotation analyses with Catmap

    Directory of Open Access Journals (Sweden)

    Krogh Morten

    2004-12-01

    Full Text Available Abstract Background Ranked gene lists from microarray experiments are usually analysed by assigning significance to predefined gene categories, e.g., based on functional annotations. Tools performing such analyses are often restricted to a category score based on a cutoff in the ranked list and a significance calculation based on random gene permutations as null hypothesis. Results We analysed three publicly available data sets, in each of which samples were divided in two classes and genes ranked according to their correlation to class labels. We developed a program, Catmap (available for download at http://bioinfo.thep.lu.se/Catmap, to compare different scores and null hypotheses in gene category analysis, using Gene Ontology annotations for category definition. When a cutoff-based score was used, results depended strongly on the choice of cutoff, introducing an arbitrariness in the analysis. Comparing results using random gene permutations and random sample permutations, respectively, we found that the assigned significance of a category depended strongly on the choice of null hypothesis. Compared to sample label permutations, gene permutations gave much smaller p-values for large categories with many coexpressed genes. Conclusions In gene category analyses of ranked gene lists, a cutoff independent score is preferable. The choice of null hypothesis is very important; random gene permutations does not work well as an approximation to sample label permutations.

  5. Seismic stability analyses - embankment dams

    Energy Technology Data Exchange (ETDEWEB)

    Boudreau, Stephane; Boulanger, Pierre; Caron, Louis Philippe [BPR, Montreal, (Canada); Karray, Mourad [Sherbrooke University, Sherbrooke, (Canada)

    2010-07-01

    An understanding of the effect of earthquakes is necessary to the design of safe dams. A wide number of methods are currently used or being developed for analysing the dynamic slop stability of embankments/dams. This paper investigated the effects of the dynamic aspects (natural period, amplifications and intensity of seismic loading) in the analysis of small dams. A procedure was developed to evaluate the performance of pseudo-static analyses by comparison with fully dynamic analyses. Static, pseudo-static, and dynamic analyses were performed using finite elements and Mohr-Coulomb shear strength criteria. The overall safety factor (FS) was compared using the reduction factor concept. The study worked on two examples of small dams located at moderate and violent seismic regions in the province of Quebec. These examples illustrated the difference between pseudo-static and dynamic analyses. The study also investigated the values of the kh coefficient for Eastern Canada seismicity.

  6. The application analyses for primary spectrum pyrometer

    Institute of Scientific and Technical Information of China (English)

    FU; TaiRan

    2007-01-01

    In the applications of primary spectrum pyrometry, based on the dynamic range and the minimum sensibility of the sensor, the application issues, such as the measurement range and the measurement partition, were investigated through theoretical analyses. For a developed primary spectrum pyrometer, the theoretical predictions of measurement range and the distributions of measurement partition were presented through numerical simulations. And the measurement experiments of high-temperature blackbody and standard temperature lamp were processed to further verify the above theoretical analyses and numerical results. Therefore the research in the paper provides the helpful supports for the applications of primary spectrum pyrometer and other radiation pyrometers.……

  7. Feed analyses and their interpretation.

    Science.gov (United States)

    Hall, Mary Beth

    2014-11-01

    Compositional analysis is central to determining the nutritional value of feedstuffs for use in ration formulation. The utility of the values and how they should be used depends on how representative the feed subsample is, the nutritional relevance and analytical variability of the assays, and whether an analysis is suitable to be applied to a particular feedstuff. Commercial analyses presently available for carbohydrates, protein, and fats have improved nutritionally pertinent description of feed fractions. Factors affecting interpretation of feed analyses and the nutritional relevance and application of currently available analyses are discussed.

  8. FAME: Software for analysing rock microstructures

    Science.gov (United States)

    Hammes, Daniel M.; Peternell, Mark

    2016-05-01

    Determination of rock microstructures leads to a better understanding of the formation and deformation of polycrystalline solids. Here, we present FAME (Fabric Analyser based Microstructure Evaluation), an easy-to-use MATLAB®-based software for processing datasets recorded by an automated fabric analyser microscope. FAME is provided as a MATLAB®-independent Windows® executable with an intuitive graphical user interface. Raw data from the fabric analyser microscope can be automatically loaded, filtered and cropped before analysis. Accurate and efficient rock microstructure analysis is based on an advanced user-controlled grain labelling algorithm. The preview and testing environments simplify the determination of appropriate analysis parameters. Various statistic and plotting tools allow a graphical visualisation of the results such as grain size, shape, c-axis orientation and misorientation. The FAME2elle algorithm exports fabric analyser data to an elle (modelling software)-supported format. FAME supports batch processing for multiple thin section analysis or large datasets that are generated for example during 2D in-situ deformation experiments. The use and versatility of FAME is demonstrated on quartz and deuterium ice samples.

  9. Conjoint-Analyse und Marktsegmentierung

    OpenAIRE

    Steiner, Winfried J.; Baumgartner, Bernhard

    2003-01-01

    Die Marktsegmentierung zählt neben der Neuproduktplanung und Preisgestaltung zu den wesentlichen Einsatzgebieten der Conjoint-Analyse. Neben traditionell eingesetzten zweistufigen Vorgehensweisen, bei denen Conjoint-Analyse und Segmentierung in zwei getrennten Schritten erfolgen, stehen heute mit Methoden wie der Clusterwise Regression oder Mixture-Modellen neuere Entwicklungen, die eine simultane Segmentierung und Präferenzschätzung ermöglichen, zur Verfügung. Der Beitrag gibt einen Überblic...

  10. Protocruzia,a highly ambiguous ciliate(Protozoa;Ciliophora):Very likely an ancestral form for Heterotrichea,Colpodea or Spirotrichea? With reevaluation of its evolutionary position based on multigene analyses

    Institute of Scientific and Technical Information of China (English)

    Thorsten; STOECK; Shin; Mann; Kyoon; Al-Rasheid; Khaled; A.; S.; Al-Khedhairy; Abdulaziz; A.

    2010-01-01

    The ciliate genus Protocruzia belongs to one of the most ambiguous taxa considering its systematic position,possibly as a member of the classes Heterotrichea,Spirotrichea or Karyorelictea,which is tentatively placed into Spirotrichea in Lynn’s 2008 system.To test these hypotheses,multigene trees(Bayesian inference,evolutionary distance,maximum parsimony,and maximum likelihood) were constructed using the small subunit rRNA(SSU rRNA) gene,internal transcribed spacer 2(ITS2) and a protein coding gene(histone H4).All analyses agree that:(1) four morphotypes of Protocruzia from different geographical origins group together and form a monophyletic clade,which cannot be assigned to any of the eleven described ciliate classes;(2) it is invariably positioned on an isolated branch separated from the class Spirotrichea suggesting that this clade should be clearly removed from Spirotrichea;(3) this leads us to hypothesize that this taxon may indeed represent a lineage on a class rank.Based on the fact that it is,both morphologically and in molecular features,closely related to the heterotrichs,Colpodea and Oligohymenophorea,Protocruziida might be an ancestral form for the subphylum Intramacronucleata in the evolutionary line from the class Heterotrichea(subphylum Postciliodesmatophora) to higher taxa.

  11. Analyses on Network Shopping Skills Based on Consumers’Right Protection%基于消费者权益保护的网络购物技巧探析

    Institute of Scientific and Technical Information of China (English)

    张健

    2012-01-01

    全文在简要介绍网络购物的含义和流程的基础上,从挑选网站、深度搜索、细选商品、关注评价、沟通工具、遵守规则、安全支付、验货签收、享有服务、主动维权等十个方面重点介绍了基于消费者权益保护的网络购物技巧。除此之外,对以"海淘"和手机购物为代表的网络购物新趋势进行了一定分析。%The paper first gives a brief introduction to the meaning to network shopping and process,and then analyses network shopping skills based consumers’right protection from ten aspects: selection of website,deep searching,choosing goods,pay attention to evaluation,communication tool,abide by the rules,secure payment,inspection and receipt,service,rights protection.Foreign online shopping and cell phone shopping has gradually become the new trend of network shopping.

  12. IGS基因及RAPD标记分析在加特隐球酵母基因分类中的应用%Genotype differentiation of Cryptococcus gattii based on IGS sequence and NAPD analyses

    Institute of Scientific and Technical Information of China (English)

    康颖倩; 朱键; 罗振华; 王和; 三上襄

    2009-01-01

    Based on sequence variations in the ITS1-5.8S-ITS2 region, Cryptococcus gattii (≡ Cryptococcu neoformans var. gattii) strains were classified into six genotypes. In this study, more sequence variations were revealed in the intergenie spacers (IGS) of rDNA among strains of this species. The C. gattii strains with different ITS and IGS types were also distinguished by RAPD (random amplified polymorphie DNA) analysis using three primers. The RAPD pattern similarities or differences among the C. gattii strains studied were roughly consistent with their relationships depicted in IGS sequence analysis. A recently reported new ITS genotype of C. gattii (ITS type 8) was also differentiated from all other heretofore reported ITS types of the species by RAPD band pattern and IGS sequence analyses. The results of this study suggest that IGSI and IGS2 nucleotide sequences are suitable for genotype differentiation of C. gattii, and that the combination of ITS, IGS1 and IGS2 region sequence analyses are more discriminative for strain differentiation of the species.%根据ITS1-5.8S-ITS2区域的特异核酸序列变化,加特隐球酵母Cryptococcus gattii(≡新型隐球酵母加特变种Cryptococcu neoformans Var.gattii)可分为6种基因型.本研究通过检测加特隐球酵母的IGS基因,发现其IGS序列有着更丰富的变异和信息位点.通过结合加特隐球酵母RAPD(随机扩增的多态性DNA)图谱比较研究,与IGS和ITS的序列分析结果大体一致,说明新近发现的加特隐球酵母ITS8型确实有别于以前报道过的其他加特隐球酵母ITS基因型.研究证明IGSl及IGS2基因片段分析可以作为加特隐球酵母基因分类鉴定中有效的辅助鉴别的分子牛物学方法,联合多种基因分类鉴定的方法可以更有效地揭示新型隐球酵母加特变种种内不同基因亚型间的遗传进化关系.

  13. Mitogenomic analyses from ancient DNA

    DEFF Research Database (Denmark)

    Paijmans, Johanna L.A.; Gilbert, M Thomas P; Hofreiter, Michael

    2013-01-01

    analyses (whether using modern or ancient DNA) were largely restricted to the analysis of short fragments of the mitochondrial genome. However, due to many technological advances during the past decade, a growing number of studies have explored the power of complete mitochondrial genome sequences...... (mitogenomes). Such studies were initially limited to analyses of extant organisms, but developments in both DNA sequencing technologies and general methodological aspects related to working with degraded DNA have resulted in complete mitogenomes becoming increasingly popular for ancient DNA studies as well....... To date, at least 124 partially or fully assembled mitogenomes from more than 20 species have been obtained, and, given the rapid progress in sequencing technology, this number is likely to dramatically increase in the future. The increased information content offered by analysing full mitogenomes has...

  14. An extensible analysable system model

    DEFF Research Database (Denmark)

    Probst, Christian W.; Hansen, Rene Rydhof

    2008-01-01

    , this does not hold for real physical systems. Approaches such as threat modelling try to target the formalisation of the real-world domain, but still are far from the rigid techniques available in security research. Many currently available approaches to assurance of critical infrastructure security......Analysing real-world systems for vulnerabilities with respect to security and safety threats is a difficult undertaking, not least due to a lack of availability of formalisations for those systems. While both formalisations and analyses can be found for artificial systems such as software...

  15. Association of airborne moisture-indicating microorganisms withbuilding-related symptoms and water damage in 100 U.S. office buildings:Analyses of the U.S. EPA BASE data

    Energy Technology Data Exchange (ETDEWEB)

    Mendell, Mark J.; Lei, Quanhong; Cozen, Myrna O.; Shendell, DerekG.; Macher, Janet M.; Tsai, Feng C.

    2003-10-01

    Metrics of culturable airborne microorganisms for either total organisms or suspected harmful subgroups have generally not been associated with symptoms among building occupants. However, the visible presence of moisture damage or mold in residences and other buildings has consistently been associated with respiratory symptoms and other health effects. This relationship is presumably caused by adverse but uncharacterized exposures to moisture-related microbiological growth. In order to assess this hypothesis, we studied relationships in U.S. office buildings between the prevalence of respiratory and irritant symptoms, the concentrations of airborne microorganisms that require moist surfaces on which to grow, and the presence of visible water damage. For these analyses we used data on buildings, indoor environments, and occupants collected from a representative sample of 100 U.S. office buildings in the U.S. Environmental Protection Agency's Building Assessment Survey and Evaluation (EPA BASE) study. We created 19 alternate metrics, using scales ranging from 3-10 units, that summarized the concentrations of airborne moisture-indicating microorganisms (AMIMOs) as indicators of moisture in buildings. Two were constructed to resemble a metric previously reported to be associated with lung function changes in building occupants; the others were based on another metric from the same group of Finnish researchers, concentration cutpoints from other studies, and professional judgment. We assessed three types of associations: between AMIMO metrics and symptoms in office workers, between evidence of water damage and symptoms, and between water damage and AMIMO metrics. We estimated (as odds ratios (ORs) with 95% confidence intervals) the unadjusted and adjusted associations between the 19 metrics and two types of weekly, work-related symptoms--lower respiratory and mucous membrane--using logistic regression models. Analyses used the original AMIMO metrics and were

  16. A Problematic Family Reunion of a Chinese-American in China: Issues of Face Abstract: As one of the heated topics in the intercultural communication studies, face issues have aroused world-wide attention in the academic field. This paper analyses thr...%ract: As one of the heated topics in the intercultural communication studies, face issues have aroused world-wide attention in the academic field. This paper analyses three critical incidents based on two face theories proposed by Brown and Levinson ...

    Institute of Scientific and Technical Information of China (English)

    曹凤琴

    2012-01-01

    As one of the heated topics in the intercultural communication studies, face issues have aroused world-wide attention in the academic field. This paper analyses three critical incidents based on two face theories proposed by Brown and Levinson (1987) and Ting-Toomey and Kurogi(1998) respectively. Lastly, by focusing on the relationship between the rapport-threatening behavior and the face, this paper intends to cultivate our awareness of face and highlight the harmonious interpersonal relationship between different cultures.

  17. Associations of indoor carbon dioxide concentrations, VOCS, environmental susceptibilities with mucous membrane and lower respiratory sick building syndrome symptoms in the BASE study: Analyses of the 100 building dataset

    Energy Technology Data Exchange (ETDEWEB)

    Apte, M.G.; Erdmann, C.A.

    2002-10-01

    Using the 100 office-building Building Assessment Survey and Evaluation (BASE) Study dataset, we performed multivariate logistic regression analyses to quantify the associations between indoor minus outdoor CO{sub 2} (dCO{sub 2}) concentrations and mucous membrane (MM) and lower respiratory system (Lresp) Sick Building Syndrome (SBS) symptoms, adjusting for age, sex, smoking status, presence of carpet in workspace, thermal exposure, relative humidity, and a marker for entrained automobile exhaust. Using principal components analysis we identified a number of possible sources of 73 measured volatile organic compounds in the office buildings, and assessed the impact of these VOCs on the probability of presenting the SBS symptoms. Additionally we included analysis adjusting for the risks for predisposition of having SBS symptoms associated with the allergic, asthmatic, and environmentally sensitive subpopulations within the office buildings. Adjusted odds ratios (ORs) for statistically significant, dose-dependant associations (p<0.05) for dry eyes, sore throat, nose/sinus congestion, and wheeze symptoms with 100-ppm increases in dCO{sub 2} ranged from 1.1 to 1.2. These results suggest that increases in the ventilation rates per person among typical office buildings will, on average significantly reduce the prevalence of several SBS symptoms, up to 80%, even when these buildings meet the existing ASHRAE ventilation standards for office buildings. VOC sources were observed to play an role in direct association with mucous membrane and lower respiratory irritation, and possibly to be indirectly involved in indoor chemical reactions with ozone that produce irritating compounds associated with SBS symptoms. O-xylene, possibly emitted from furniture coatings was associated with shortness of breath (OR at the maximum concentration = 8, p < 0.05). The environmental sensitivities of a large subset of the office building population add to the overall risk of SBS symptoms (ORs

  18. Descriptive Analyses of Mechanical Systems

    DEFF Research Database (Denmark)

    Andreasen, Mogens Myrup; Hansen, Claus Thorp

    2003-01-01

    Forord Produktanalyse og teknologianalyse kan gennmføres med et bredt socio-teknisk sigte med henblik på at forstå kulturelle, sociologiske, designmæssige, forretningsmæssige og mange andre forhold. Et delområde heri er systemisk analyse og beskrivelse af produkter og systemer. Nærværende kompend...

  19. Evaluation "Risk analyses of agroparks"

    NARCIS (Netherlands)

    Ge, L.

    2011-01-01

    Dit TransForum project richt zich op analyse van de onzekerheden en mogelijkheden van agroparken. Dit heeft geleid tot een risicomodel dat de kwalitatieve en/of kwantitatieve onzekerheden van een agropark project in kaart brengt. Daarmee kunnen maatregelen en managementstrategiën worden geïdentifice

  20. La Interseccionalidad como Instrumento Analítico de Interpelación en la Violencia de Género (Intersectionality, a Methodological Tool for Analysing and Addressing Gender-based Violence

    Directory of Open Access Journals (Sweden)

    Raquel Guzman Ordaz

    2015-06-01

    Full Text Available This paper reviews peripheral feminism reflections upon the need to move beyond classic gender violence studies’ epistemological assumptions. Gender-based-analysis (GBA conceptualization represented a considerable advance in recognising patriarchy as a structural system of domination and its relevance in studying processes of violence against women. Nonetheless this approach exhibit limitations as we try to investigate further beyond simple analytical dichotomies so often deployed when discussing gender violence. Consequently we highlight the importance of relating gender to other Intersectional inequality axis such as social class, age, sexual identities different from the heteronormativity, functional diversity, ethnic group/race, or citizenship. An encompassing analytical perspective allows for a multidimensional framework more suitable for the study of such a complex phenomenon as is violence against women. In this manner we are able to visualize and analyse experiences that are usually marginalised and excluded from hegemonic definitions of gender violence. Este trabajo revisa las reflexiones de los feminismos periféricos en torno a la necesidad de avanzar sobre los presupuestos epistemológicos de los estudios de “violencia de género”. Si bien la conceptualización realizada desde los gender-based analysis (GBA ha significado un gran avance para el reconocimiento del patriarcado como sistema de dominación estructural dentro de los procesos de la violencia contra las mujeres, este enfoque se muestra limitado frente a la superación de dicotomías analíticas que se presentan a menudo en el estudio de la violencia de género. Por ello, se propone la integración interseccional del género con otros ejes de desigualdad, como clase social, edad, identidades sexuales (distintas de la heteronormatividad, diversidad funcional, raza/etnia o ciudadanía. Esta ampliación analítica proporciona la posibilidad de un enfoque multidimensional

  1. A model-based analysis for the improvement of electrical energy supply of future offshore windparks by means of biogas technology; Modellbasierte Analyse zur Verbesserung der elektrischen Energiebereitstellung zukuenftiger Offshore-Windparks mittels Biogastechnologie

    Energy Technology Data Exchange (ETDEWEB)

    Tigges, Martin

    2010-09-06

    Since the beginning of industrial revolution energy supply in Germany was based on fossil fuels. Climatic change, the greenhouse effect, the growth of population on the one hand and shortage on fossil fuels on the other hand and the will to be independent from importing resources from political instable countries are calling for serious changes. The primary modernisation of the current energy supply needs to target a sustainable, generation comprehensive solution. The use of renewable fuels is necessary. Wind energy usage is one of the most promising alternatives within the short-term to middle-term planning of environmental policy. As in Germany nearly all potential habitats on mainland already are tapped, significant development potential is seen at offshore habitats in North as well as Baltic Sea. Germany aims for the allotment of up to 25 GW of offshore wind energy in the North and Baltic Sea till 2025. Electricity generation by wind energy plants subjects to the conditions the volatile characteristics of the wind. Within the planned big offshore wind energy farms comprising more than 80 plants changes in wind velocity as well as directions will lead to fluctuations in energy supply. Up to now the plant resource scheduling needed to react on the users demand. The further development of wind energy and the differences between forecasted and actual wind energy feeds do and will hinder this resource scheduling. New approaches need to be found to be able to ensure the security of energy supplies in Germany. These approaches should be sustainable and therefore be based on the usage of renewable fuels. Within this dissertation possible solutions as well as constraints of the usage of biogas as a nearly CO2 neutral fuel in combination with micro gas turbines adapted to the usage with biogas plants to be able to align the differences between forecasted and actual wind energy supply for a future offshore wind energy plant park are analysed. This combination allows an

  2. Materials characterization of radioactive waste forms using a multi-element detection method based on the instrumental neutron activation analysis. MEDINA; Stoffliche Charakterisierung radioaktiver Abfallprodukte durch ein Multi-Element-Analyseverfahren basierend auf der instrumentellen Neutronen-Aktivierungs-Analyse. MEDINA

    Energy Technology Data Exchange (ETDEWEB)

    Havenith, Andreas Wilhelm

    2015-07-01

    the identification and quantification of toxic elements in radioactive waste forms. The physical basis of MEDINA is the Prompt- and Delayed-Gamma-Neutron-Activation-Analysis (P and DGNAA). The neutron activation analysis of material samples in the gram range is state-of-the-art of science and technology under use of thermal or cold neutrons at research reactors. The thereof retrieved nuclear data and the results of the feasibility study for the characterization of large-volume samples up to a volume of 50 l /1-5/ are the scientific basis of the present dissertation. With a newly developed test facility and an innovative algorithms for a rotationally dependent analysis the element quantification of larger inhomogeneous samples can be performed by taking into account the gamma and neutron self-shielding for the first time. A test facility for the chemical characterisation of 200-l-drums was built and several homogeneous and inhomogeneous samples with a waste matrix of concrete were analysed to validate the measurement technique. The conceptual design of the MEDINA test facility is based on stochastic simulations studies with the computer code MCNP. For a measurement the drum of interest is positioned on a turntable inside an irradiation chamber made exclusively of graphite, acting as neutron moderator and reflector. The drum is irradiated with 14 MeV neutrons produced by a deuterium-tritium (D-T) neutron-generator operating in pulse mode. The prompt and delayed gamma rays, induced by neutron reactions occurring at different times after the neutron pulses, are measured with a high-purity germanium (HPGe) detector placed in a wall of the irradiation chamber perpendicular to the neutron generator. The HPGe detector signals are processed through an appropriate nuclear electronics. The gamma rays spectra are recorded for each discrete drum rotation, which allows to investigate the sample homogeneity. The developed algorithm for the element quantification is based on the

  3. A stratigraphical-geochemical study on the Chaco Paraná continental rift basin- An approach study based on regional sedimentology and drill-hole core analyses,South América

    Institute of Scientific and Technical Information of China (English)

    Roberto Torra

    2006-01-01

    This paper is focused on a geologic "regional rift basin system pattern" and its stratigraphical-geochemical relationship. This is mainly based on the littoral shallow marine sedimentary succession paleogeography and deposits. These successions characterize the large extensional intracratonic Chaco rift basin system evolved from the Upper Cretaceous ( Late Campanian-Senonian-Maastrichtian-Early Paleocene) to Quaternary time. The siliciclastic littoral shallow marine successions were deposited from Early Senonian-Maastrichtian to Late Miocene during three main successive littoral shallow marine transgressions of continental extension.These transgressions happened over the wide pediplanized terrains of South America. These lands exist west of the more positive areas, between the Brazilian Shield and the foreland massifs that were settled in the more westernwards areas. Later, these regional foreland massifs were coupled and raised to the Andean Orogen Belt during the last 5 million years.The extensive intracratonic pediplanized low topographic relief areas were the reservoirs of siliciclastic littoral shallow marine succession deposits during the three successive widespread vast continental littoral shallow marine transgressions.The first transgression began at the Latest Campanian-Senonian and/or Early Maastrichtian time. After this episode, the sedimentary depositional systems continued during the Cenozoic until the Latest Miocene. These successions constitute a major allostratigraphic unit.The limit with underlying units is the regional unconformity between the regional volcanic event (Jurassic-Cretacic and interleaved eolianite sandstones) at the base and the undifferentiated Quaternary sediments (called as the Pampeano and Post-Pampeano Formations sensu lato). Based on many facies analyses there had been checked out different levels in the eustatic sea level variations within the allostratigraphic unit.Three major stages of extensional climax were recognized and

  4. Analyse du discours et archive

    OpenAIRE

    Maingueneau, Dominique

    2007-01-01

    Les recherches qui se réclament de "l’analyse du discours" connaissent un développement considérable dans le monde entier ; en revanche, "l’école française d’analyse du discours" (AD) traverse une crise d’identité depuis le début des années 80. Dans cet exposé nous voudrions explorer les raisons de cette crise, puis préciser le concept d’archive qui, à notre sens, permet de prolonger la voie ouverte à la fin des années 1960. Mais il ne s’agit que d’une des voies possibles, dès lors que, comme...

  5. Workload analyse of assembling process

    Science.gov (United States)

    Ghenghea, L. D.

    2015-11-01

    The workload is the most important indicator for managers responsible of industrial technological processes no matter if these are automated, mechanized or simply manual in each case, machines or workers will be in the focus of workload measurements. The paper deals with workload analyses made to a most part manual assembling technology for roller bearings assembling process, executed in a big company, with integrated bearings manufacturing processes. In this analyses the delay sample technique have been used to identify and divide all bearing assemblers activities, to get information about time parts from 480 minutes day work time that workers allow to each activity. The developed study shows some ways to increase the process productivity without supplementary investments and also indicated the process automation could be the solution to gain maximum productivity.

  6. Analysing Protocol Stacks for Services

    DEFF Research Database (Denmark)

    Gao, Han; Nielson, Flemming; Nielson, Hanne Riis

    2011-01-01

    We show an approach, CaPiTo, to model service-oriented applications using process algebras such that, on the one hand, we can achieve a certain level of abstraction without being overwhelmed by the underlying implementation details and, on the other hand, we respect the concrete industrial standa...... to the financial case study taken from Chapter 0-3. Finally, we develop a static analysis to analyse the security properties as they emerge at the level of concrete industrial protocols....

  7. Tematisk analyse af amerikansk hiphop

    OpenAIRE

    Tranberg-Hansen, Katrine; Bøgh Larsen, Cecilie; Jeppsson,Louise Emilie; Lindberg Kirkegaard, Nanna; Funch Madsen, Signe; Bülow Bach, Maria

    2013-01-01

    This paper examines the possible development in the function of American hiphop. It focuses on specific themes like ghetto, freedom, rebellion, and racial discrimination in hiphop music. To investigate this possible development two text analysis methods are used: a pragmatic and a stylistic text analysis, and a historical method is used: a source criticism. A minimal amount of literature has been published on how hiphop culture arose. The-­‐ se studies, however, make it possible to analyse...

  8. Reliability of chemical analyses of water samples

    Energy Technology Data Exchange (ETDEWEB)

    Beardon, R.

    1989-11-01

    Ground-water quality investigations require reliable chemical analyses of water samples. Unfortunately, laboratory analytical results are often unreliable. The Uranium Mill Tailings Remedial Action (UMTRA) Project`s solution to this problem was to establish a two phase quality assurance program for the analysis of water samples. In the first phase, eight laboratories analyzed three solutions of known composition. The analytical accuracy of each laboratory was ranked and three laboratories were awarded contracts. The second phase consists of on-going monitoring of the reliability of the selected laboratories. The following conclusions are based on two years experience with the UMTRA Project`s Quality Assurance Program. The reliability of laboratory analyses should not be taken for granted. Analytical reliability may be independent of the prices charged by laboratories. Quality assurance programs benefit both the customer and the laboratory.

  9. THOR Turbulence Electron Analyser: TEA

    Science.gov (United States)

    Fazakerley, Andrew; Moore, Tom; Owen, Chris; Pollock, Craig; Wicks, Rob; Samara, Marilia; Rae, Jonny; Hancock, Barry; Kataria, Dhiren; Rust, Duncan

    2016-04-01

    Turbulence Heating ObserveR (THOR) is the first mission ever flown in space dedicated to plasma turbulence. The Turbulence Electron Analyser (TEA) will measure the plasma electron populations in the mission's Regions of Interest. It will collect a 3D electron velocity distribution with cadences as short as 5 ms. The instrument will be capable of measuring energies up to 30 keV. TEA consists of multiple electrostatic analyser heads arranged so as to measure electrons arriving from look directions covering the full sky, i.e. 4 pi solid angle. The baseline concept is similar to the successful FPI-DES instrument currently operating on the MMS mission. TEA is intended to have a similar angular resolution, but a larger geometric factor. In comparison to earlier missions, TEA improves on the measurement cadence. For example, MMS FPI-DES routinely operates at 30 ms cadence. The objective of measuring distributions at rates as fast as 5 ms is driven by the mission's scientific requirements to resolve electron gyroscale size structures, where plasma heating and fluctuation dissipation is predicted to occur. TEA will therefore be capable of making measurements of the evolution of distribution functions across thin (a few km) current sheets travelling past the spacecraft at up to 600 km/s, of the Power Spectral Density of fluctuations of electron moments and of distributions fast enough to match frequencies with waves expected to be dissipating turbulence (e.g. with 100 Hz whistler waves).

  10. ANALYSING SPACE: ADAPTING AND EXTENDING MULTIMODAL SEMIOTICS

    Directory of Open Access Journals (Sweden)

    Louise J. Ravelli

    2015-07-01

    Full Text Available In the field of multimodal discourse analysis, one of the most exciting sites of application is that of 3D space: examining aspects of built environment for its meaningmaking potential. For the built environment – homes, offices, public buildings, parks, etc. – does indeed make meaning. These are spaces which speak – often their meanings are so familiar, we no longer hear what they say; sometimes, new and unusual sites draw attention to their meanings, and they are hotly contested. This chapter will suggest ways of analyzing 3D texts, based on the framework of Kress and van Leeuwen (2006. This framework, developed primarily for the analysis of 2D images, has been successfully extended to a range of other multimodal texts. Extension to the built environment includes Pang (2004, O’Toole (1994, Ravelli (2006, Safeyton (2004, Stenglin (2004 and White (1994, whose studies will inform the analyses presented here. This article will identify some of the key theoretical principles which underline this approach, including the notions of text, context and metafunction, and will describe some of the main areas of analysis for 3D texts. Also, ways of bringing the analyses together will be considered. The analyses will be demonstrated in relation to the Scientia building at the University of New South Wales, Australia.

  11. Analyses of containment structures with corrosion damage

    International Nuclear Information System (INIS)

    Corrosion damage to a nuclear power plant containment structure can degrade the pressure capacity of the vessel. For the low-carbon, low- strength steels used in containments, the effect of corrosion on material properties is discussed. Strain-to-failure tests, in uniaxial tension, have been performed on corroded material samples. Results were used to select strain-based failure criteria for corroded steel. Using the ABAQUS finite element analysis code, the capacity of a typical PWR Ice Condenser containment with corrosion damage has been studied. Multiple analyses were performed with the locations of the corrosion the containment, and the amount of corrosion varied in each analysis

  12. New insights into domestication of carrot from root transcriptome analyses

    NARCIS (Netherlands)

    Rong, J.; Lammers, Y.; Strasburg, J.L.; Schidlo, N.S.; Ariyurek, Y.; Jong, de T.J.; Klinkhamer, P.G.L.; Smulders, M.J.M.; Vrieling, K.

    2014-01-01

    Background - Understanding the molecular basis of domestication can provide insights into the processes of rapid evolution and crop improvement. Here we demonstrated the processes of carrot domestication and identified genes under selection based on transcriptome analyses. Results - The root transcr

  13. Analysing ESP Texts, but How?

    Directory of Open Access Journals (Sweden)

    Borza Natalia

    2015-03-01

    Full Text Available English as a second language (ESL teachers instructing general English and English for specific purposes (ESP in bilingual secondary schools face various challenges when it comes to choosing the main linguistic foci of language preparatory courses enabling non-native students to study academic subjects in English. ESL teachers intending to analyse English language subject textbooks written for secondary school students with the aim of gaining information about what bilingual secondary school students need to know in terms of language to process academic textbooks cannot avoiding deal with a dilemma. It needs to be decided which way it is most appropriate to analyse the texts in question. Handbooks of English applied linguistics are not immensely helpful with regard to this problem as they tend not to give recommendation as to which major text analytical approaches are advisable to follow in a pre-college setting. The present theoretical research aims to address this lacuna. Respectively, the purpose of this pedagogically motivated theoretical paper is to investigate two major approaches of ESP text analysis, the register and the genre analysis, in order to find the more suitable one for exploring the language use of secondary school subject texts from the point of view of an English as a second language teacher. Comparing and contrasting the merits and limitations of the two contrastive approaches allows for a better understanding of the nature of the two different perspectives of text analysis. The study examines the goals, the scope of analysis, and the achievements of the register perspective and those of the genre approach alike. The paper also investigates and reviews in detail the starkly different methods of ESP text analysis applied by the two perspectives. Discovering text analysis from a theoretical and methodological angle supports a practical aspect of English teaching, namely making an informed choice when setting out to analyse

  14. Economical analyses in interventional radiology

    International Nuclear Information System (INIS)

    Considerations about the relation between benefit and expenses are also gaining increasing importance in interventional radiology. This review aims at providing a survey about the published data concerning economical analyses of some of the more frequently employed interventions in radiology excluding neuroradiological and coronary interventions. Because of the relative scarcity of literature in this field, all identified articles (n=46) were included without selection for methodological quality. For a number of radiological interventions the cost-effectiveness has already been demonstrated, e.g., PTA of femoropopliteal and iliac artery stenoses, stenting of renal artery stenoses, placement of vena-cava filters, as well as metal stents in malignant biliary and esophageal obstructions. Conflicting data exist for the treatment of abdominal aortic aneurysms. So far, no analysis could be found that directly compares bypass surgery versus PTA+stent in iliac arteries. (orig.)

  15. HGCal Simulation Analyses for CMS

    CERN Document Server

    Bruno, Sarah Marie

    2015-01-01

    This summer, I approached the topic of fast-timing detection of photons from Higgs decays via simulation analyses, working under the supervision of Dr. Adolf Bornheim of the California Institute of Technology. My specific project focused on simulating the high granularity calorimeter for the Compact Muon Solenoid (CMS) experiment. CMS detects particles using calorimeters. The Electromagnetic Calorimeter (ECal) is arranged cylindrically to form a barrel section and two “endcaps.” Previously, both the barrel and endcap have employed lead tungstate crystal detectors, known as the “shashlik” design. The crystal detectors, however, rapidly degrade from exposure to radiation. This effect is most pronounced in the endcaps. To avoid the high expense of frequently replacing degraded detectors, it was recently decided to eliminate the endcap crystals in favor of an arrangement of silicon detectors known as the “High Granularity Calorimeter” (HGCal), while leaving the barrel detector technology unchanged. T...

  16. Analyse des besoins des usagers

    OpenAIRE

    KHOUDOUR,L; LANGLAIS,A; Charpentier, C.; MOTTE,C; PIAN,C

    2002-01-01

    Il s'agit d'étendre la surveillance vidéo de l'enceinte du métro vers l'intérieur des rames. Les images captées constituent des prises de vue des événements qui se déroulent à l'intérieur des véhicules afin notamment d'améliorer la sécurité des usagers transportes. Il est possible de mémoriser les images des quelques instants précédant un incident usager, d'analyser ces images en temps différé et de mieux appréhender en temps réel le comportement des usagers face à des événements ou des consi...

  17. Uncertainty and Sensitivity Analyses Plan

    Energy Technology Data Exchange (ETDEWEB)

    Simpson, J.C.; Ramsdell, J.V. Jr.

    1993-04-01

    Hanford Environmental Dose Reconstruction (HEDR) Project staff are developing mathematical models to be used to estimate the radiation dose that individuals may have received as a result of emissions since 1944 from the US Department of Energy's (DOE) Hanford Site near Richland, Washington. An uncertainty and sensitivity analyses plan is essential to understand and interpret the predictions from these mathematical models. This is especially true in the case of the HEDR models where the values of many parameters are unknown. This plan gives a thorough documentation of the uncertainty and hierarchical sensitivity analysis methods recommended for use on all HEDR mathematical models. The documentation includes both technical definitions and examples. In addition, an extensive demonstration of the uncertainty and sensitivity analysis process is provided using actual results from the Hanford Environmental Dose Reconstruction Integrated Codes (HEDRIC). This demonstration shows how the approaches used in the recommended plan can be adapted for all dose predictions in the HEDR Project.

  18. Uncertainty and Sensitivity Analyses Plan

    International Nuclear Information System (INIS)

    Hanford Environmental Dose Reconstruction (HEDR) Project staff are developing mathematical models to be used to estimate the radiation dose that individuals may have received as a result of emissions since 1944 from the US Department of Energy's (DOE) Hanford Site near Richland, Washington. An uncertainty and sensitivity analyses plan is essential to understand and interpret the predictions from these mathematical models. This is especially true in the case of the HEDR models where the values of many parameters are unknown. This plan gives a thorough documentation of the uncertainty and hierarchical sensitivity analysis methods recommended for use on all HEDR mathematical models. The documentation includes both technical definitions and examples. In addition, an extensive demonstration of the uncertainty and sensitivity analysis process is provided using actual results from the Hanford Environmental Dose Reconstruction Integrated Codes (HEDRIC). This demonstration shows how the approaches used in the recommended plan can be adapted for all dose predictions in the HEDR Project

  19. Isotopic signatures by bulk analyses

    International Nuclear Information System (INIS)

    Los Alamos National Laboratory has developed a series of measurement techniques for identification of nuclear signatures by analyzing bulk samples. Two specific applications for isotopic fingerprinting to identify the origin of anthropogenic radioactivity in bulk samples are presented. The first example is the analyses of environmental samples collected in the US Arctic to determine the impact of dumping of radionuclides in this polar region. Analyses of sediment and biota samples indicate that for the areas sampled the anthropogenic radionuclide content of sediments was predominantly the result of the deposition of global fallout. The anthropogenic radionuclide concentrations in fish, birds and mammals were very low. It can be surmised that marine food chains are presently not significantly affected. The second example is isotopic fingerprinting of water and sediment samples from the Rocky Flats Facility (RFP). The largest source of anthropogenic radioactivity presently affecting surface-waters at RFP is the sediments that are currently residing in the holding ponds. One gram of sediment from a holding pond contains approximately 50 times more plutonium than 1 liter of water from the pond. Essentially 100% of the uranium in Ponds A-1 and A-2 originated as depleted uranium. The largest source of radioactivity in the terminal Ponds A-4, B-5 and C-2 was naturally occurring uranium and its decay product radium. The uranium concentrations in the waters collected from the terminal ponds contained 0.05% or less of the interim standard calculated derived concentration guide for uranium in waters available to the public. All of the radioactivity observed in soil, sediment and water samples collected at RFP was naturally occurring, the result of processes at RFP or the result of global fallout. No extraneous anthropogenic alpha, beta or gamma activities were detected. The plutonium concentrations in Pond C-2 appear to vary seasonally

  20. Spectro-microscopic Characterization of Physical Properties and Phase Separations in Individual Atmospheric Particles

    Science.gov (United States)

    OBrien, R. E.; Wang, B.; Neu, A.; Kelly, S. T.; Lundt, N.; Epstein, S. A.; MacMillan, A.; You, Y.; Laskin, A.; Nizkorodov, S.; Bertram, A. K.; Moffet, R.; Gilles, M.

    2013-12-01

    The phase state and liquid-liquid phase separations of ambient and laboratory generated aerosol particles were investigated using (1) scanning transmission x-ray microscopy/near-edge x-ray absorption fine structure spectroscopy (STXM/NEXAFS) coupled to a relative humidity (RH) controlled in-situ chamber and (2) environmental scanning electron microscopy (ESEM). The phase states of the particles were determined from measurements of their size and optical density. A comparison is made between the observed phase states of ambient samples and of laboratory generated aerosols to determine how well laboratory samples represent the phase of ambient samples. In addition, liquid-liquid phase separations in laboratory generated particles were investigated. Preliminary results showing that liquid-liquid phase separations occur at RH's between the deliquescence and efflorescence points and that the organic phase surrounds the inorganic phase will be presented. The STXM/NEXAFS technique provides insight into the degree of mixing at the deliquescence point and the degree of phase separation for particles of atmospherically relevant sizes.

  1. Learner as Statistical Units of Analyses

    Directory of Open Access Journals (Sweden)

    Vivek Venkatesh

    2011-01-01

    Full Text Available Educational psychologists have researched the generality and specificity of metacognitive monitoring in the context of college-level multiple-choice tests, but fairly little is known as to how learners monitor their performance on more complex academic tasks. Even lesser is known about how monitoring proficiencies such as discrimination and bias might be related to key self-regulatory processes associated with task understanding. This quantitative study explores the relationship between monitoring proficiencies and task understanding in 39 adult learners tackling ill-structured writing tasks for a graduate “theories of e-learning” course. Using learner as unit of analysis, the generality of monitoring is confirmed through intra-measure correlation analyses while facets of its specificity stand out due to the absence of inter-measure correlations. Unsurprisingly, learner-based correlational and repeated measures analyses did not reveal how monitoring proficiencies and task understanding might be related. However, using essay as unit of analysis, ordinal and multinomial regressions reveal how monitoring influences different levels of task understanding. Results are interpreted not only in light of novel procedures undertaken in calculating performance prediction capability but also in the application of essay-based, intra-sample statistical analysis that reveal heretofore unseen relationships between academic self-regulatory constructs.

  2. London Education and Inclusion Project (LEIP): Exploring Negative and Null Effects of a Cluster-Randomised School-Intervention to Reduce School Exclusion—Findings from Protocol-Based Subgroup Analyses

    Science.gov (United States)

    Obsuth, Ingrid; Cope, Aiden; Sutherland, Alex; Pilbeam, Liv; Murray, Aja Louise; Eisner, Manuel

    2016-01-01

    This paper presents subgroup analyses from the London Education and Inclusion Project (LEIP). LEIP was a cluster-randomised controlled trial of an intervention called Engage in Education-London (EiE-L) which aimed to reduce school exclusions in those at greatest risk of exclusion. Pupils in the control schools attended an hour-long employability seminar. Minimisation was used to randomly assign schools to treatment and control following baseline data collection. The study involved 36 schools (17 in treatment—373 pupils; 19 in control—369 pupils) with >28% free school meal eligibility across London and utilised on pupil self-reports, teacher reports as well as official records to assess the effectiveness of EiE-L. Due to multiple data sources, sample sizes varied according to analysis. Analyses of pre-specified subgroups revealed null and negative effects on school exclusion following the intervention. Our findings suggest that the design and implementation of EiE-L may have contributed to the negative outcomes for pupils in the treatment schools when compared to those in the control schools. These findings call into question the effectiveness of bolt-on short-term interventions with pupils, particularly those at the highest risk of school exclusion and when they are faced with multiple problems. This is especially pertinent given the possibility of negative outcomes. Trial Registration: Controlled Trials: ISRCTN23244695 PMID:27045953

  3. Severe Accident Recriticality Analyses (SARA)

    Energy Technology Data Exchange (ETDEWEB)

    Frid, W. [Swedish Nuclear Power Inspectorate, Stockholm (Sweden); Hoejerup, F. [Risoe National Lab. (Denmark); Lindholm, I.; Miettinen, J.; Puska, E.K. [VTT Energy, Helsinki (Finland); Nilsson, Lars [Studsvik Eco and Safety AB, Nykoeping (Sweden); Sjoevall, H. [Teoliisuuden Voima Oy (Finland)

    1999-11-01

    Recriticality in a BWR has been studied for a total loss of electric power accident scenario. In a BWR, the B{sub 4}C control rods would melt and relocate from the core before the fuel during core uncovery and heat-up. If electric power returns during this time-window unborated water from ECCS systems will start to reflood the partly control rod free core. Recriticality might take place for which the only mitigating mechanisms are the Doppler effect and void formation. In order to assess the impact of recriticality on reactor safety, including accident management measures, the following issues have been investigated in the SARA project: 1. the energy deposition in the fuel during super-prompt power burst, 2. the quasi steady-state reactor power following the initial power burst and 3. containment response to elevated quasi steady-state reactor power. The approach was to use three computer codes and to further develop and adapt them for the task. The codes were SIMULATE-3K, APROS and RECRIT. Recriticality analyses were carried out for a number of selected reflooding transients for the Oskarshamn 3 plant in Sweden with SIMULATE-3K and for the Olkiluoto 1 plant in Finland with all three codes. The core state initial and boundary conditions prior to recriticality have been studied with the severe accident codes SCDAP/RELAP5, MELCOR and MAAP4. The results of the analyses show that all three codes predict recriticality - both superprompt power bursts and quasi steady-state power generation - for the studied range of parameters, i. e. with core uncovery and heat-up to maximum core temperatures around 1800 K and water flow rates of 45 kg/s to 2000 kg/s injected into the downcomer. Since the recriticality takes place in a small fraction of the core the power densities are high which results in large energy deposition in the fuel during power burst in some accident scenarios. The highest value, 418 cal/g, was obtained with SIMULATE-3K for an Oskarshamn 3 case with reflooding

  4. NOx analyser interefence from alkenes

    Science.gov (United States)

    Bloss, W. J.; Alam, M. S.; Lee, J. D.; Vazquez, M.; Munoz, A.; Rodenas, M.

    2012-04-01

    Nitrogen oxides (NO and NO2, collectively NOx) are critical intermediates in atmospheric chemistry. NOx abundance controls the levels of the primary atmospheric oxidants OH, NO3 and O3, and regulates the ozone production which results from the degradation of volatile organic compounds. NOx are also atmospheric pollutants in their own right, and NO2 is commonly included in air quality objectives and regulations. In addition to their role in controlling ozone formation, NOx levels affect the production of other pollutants such as the lachrymator PAN, and the nitrate component of secondary aerosol particles. Consequently, accurate measurement of nitrogen oxides in the atmosphere is of major importance for understanding our atmosphere. The most widely employed approach for the measurement of NOx is chemiluminescent detection of NO2* from the NO + O3 reaction, combined with NO2 reduction by either a heated catalyst or photoconvertor. The reaction between alkenes and ozone is also chemiluminescent; therefore alkenes may contribute to the measured NOx signal, depending upon the instrumental background subtraction cycle employed. This interference has been noted previously, and indeed the effect has been used to measure both alkenes and ozone in the atmosphere. Here we report the results of a systematic investigation of the response of a selection of NOx analysers, ranging from systems used for routine air quality monitoring to atmospheric research instrumentation, to a series of alkenes ranging from ethene to the biogenic monoterpenes, as a function of conditions (co-reactants, humidity). Experiments were performed in the European Photoreactor (EUPHORE) to ensure common calibration, a common sample for the monitors, and to unequivocally confirm the alkene (via FTIR) and NO2 (via DOAS) levels present. The instrument responses ranged from negligible levels up to 10 % depending upon the alkene present and conditions used. Such interferences may be of substantial importance

  5. 基于质构仪的茶树新梢茎杆嫩度变化规律研究%Study of Developmental Pattern of Tea Shoot Tenderness on the Base of Texture Analyser

    Institute of Scientific and Technical Information of China (English)

    黄艳; 韦康; 王丽鸳; 成浩; 贺巍; 周健

    2012-01-01

    使用质构仪测定了龙井43和中茶108新梢各节茎的剪切力,取最大剪切力表示新梢的嫩度,剪切力越小嫩度越高,建立了最大剪切力测定新梢嫩度的方法.结果表明,质构仪测新梢嫩度是可行的;在连续时间内采摘鲜叶新梢老化主要表现在第3~5节茎,第1~2节茎的嫩度变化相对较小;新梢嫩度与成熟度、空间位置、采摘时间、品种有一定的相关性;修剪处理显著提高第3~4节茎的嫩度.本研究初步证明了新梢不同茎位剪切力的变化存在规律性,为鉴定茶树品种的持嫩性提供了评价方法.%Texture analyser was utilized to study shoot tenderness in tea cultivar "Longjing 43" and "Zhongcha 108". The evaluation method was established by taking maximum shearing force to determine shoot tenderness. Low maximum shearing force represents high shoot tenderness. The results showed that it is feasible to use texture analyser to determine shoot tenderness. There was a sharp decrease of shoot tenderness from the third to fifth node. Furthermore, the tenderness of the first and second nodes was relatively high. The shoot tenderness was correlated with maturity, spatial location, plucking time and variety. Pruning significantly increased the tenderness of the third and fourth nodes. A consistently changing pattern of tea shoot tenderness was found by texture analyser in this study, which provided a useful method to evaluate shoot tenderness and its keeping ability in tea plant.

  6. Evaluation of Model Operational Analyses during DYNAMO

    Science.gov (United States)

    Ciesielski, Paul; Johnson, Richard

    2013-04-01

    A primary component of the observing system in the DYNAMO-CINDY2011-AMIE field campaign was an atmospheric sounding network comprised of two sounding quadrilaterals, one north and one south of the equator over the central Indian Ocean. During the experiment a major effort was undertaken to ensure the real-time transmission of these data onto the GTS (Global Telecommunication System) for dissemination to the operational centers (ECMWF, NCEP, JMA, etc.). Preliminary estimates indicate that ~95% of the soundings from the enhanced sounding network were successfully transmitted and potentially used in their data assimilation systems. Because of the wide use of operational and reanalysis products (e.g., in process studies, initializing numerical simulations, construction of large-scale forcing datasets for CRMs, etc.), their validity will be examined by comparing a variety of basic and diagnosed fields from two operational analyses (ECMWF and NCEP) to similar analyses based solely on sounding observations. Particular attention will be given to the vertical structures of apparent heating (Q1) and drying (Q2) from the operational analyses (OA), which are strongly influenced by cumulus parameterizations, a source of model infidelity. Preliminary results indicate that the OA products did a reasonable job at capturing the mean and temporal characteristics of convection during the DYNAMO enhanced observing period, which included the passage of two significant MJO events during the October-November 2011 period. For example, temporal correlations between Q2-budget derived rainfall from the OA products and that estimated from the TRMM satellite (i.e., the 3B42V7 product) were greater than 0.9 over the Northern Sounding Array of DYNAMO. However closer inspection of the budget profiles show notable differences between the OA products and the sounding-derived results in low-level (surface to 700 hPa) heating and drying structures. This presentation will examine these differences and

  7. IDEA: Interactive Display for Evolutionary Analyses

    Directory of Open Access Journals (Sweden)

    Carlton Jane M

    2008-12-01

    Full Text Available Abstract Background The availability of complete genomic sequences for hundreds of organisms promises to make obtaining genome-wide estimates of substitution rates, selective constraints and other molecular evolution variables of interest an increasingly important approach to addressing broad evolutionary questions. Two of the programs most widely used for this purpose are codeml and baseml, parts of the PAML (Phylogenetic Analysis by Maximum Likelihood suite. A significant drawback of these programs is their lack of a graphical user interface, which can limit their user base and considerably reduce their efficiency. Results We have developed IDEA (Interactive Display for Evolutionary Analyses, an intuitive graphical input and output interface which interacts with PHYLIP for phylogeny reconstruction and with codeml and baseml for molecular evolution analyses. IDEA's graphical input and visualization interfaces eliminate the need to edit and parse text input and output files, reducing the likelihood of errors and improving processing time. Further, its interactive output display gives the user immediate access to results. Finally, IDEA can process data in parallel on a local machine or computing grid, allowing genome-wide analyses to be completed quickly. Conclusion IDEA provides a graphical user interface that allows the user to follow a codeml or baseml analysis from parameter input through to the exploration of results. Novel options streamline the analysis process, and post-analysis visualization of phylogenies, evolutionary rates and selective constraint along protein sequences simplifies the interpretation of results. The integration of these functions into a single tool eliminates the need for lengthy data handling and parsing, significantly expediting access to global patterns in the data.

  8. Comparison of elastic and inelastic analyses

    International Nuclear Information System (INIS)

    The use of inelastic analysis methods instead of the traditional elastic analysis methods in the design of radioactive material (RAM) transport packagings leads to a better understanding of the response of the package to mechanical loadings. Thus, better assessment of the containment, thermal protection, and shielding integrity of the package after a structure accident event can be made. A more accurate prediction of the package response can lead to enhanced safety and also allow for a more efficient use of materials, possibly leading to a package with higher capacity or lower weight. This paper discusses the advantages and disadvantages of using inelastic analysis in the design of RAM shipping packages. The use of inelastic analysis presents several problems to the package designer. When using inelastic analysis the entire nonlinear response of the material must be known, including the effects of temperature changes and strain rate. Another problem is that there currently is not an acceptance criteria for this type of analysis that is approved by regulatory agencies. Inelastic analysis acceptance criteria based on failure stress, failure strain , or plastic energy density could be developed. For both elastic and inelastic analyses it is also important to include other sources of stress in the analyses, such as fabrication stresses, thermal stresses, stresses from bolt preloading, and contact stresses at material interfaces. Offsetting these added difficulties is the improved knowledge of the package behavior. This allows for incorporation of a more uniform margin of safety, which can result in weight savings and a higher level of confidence in the post-accident configuration of the package. In this paper, comparisons between elastic and inelastic analyses are made for a simple ring structure and for a package to transport a large quantity of RAM by rail (rail cask) with lead gamma shielding to illustrate the differences in the two analysis techniques

  9. Assessment of anti-inflammatory and anti-arthritic properties of Acmella uliginosa (Sw.) Cass. based on experiments in arthritic rat models and qualitative gas chromatography-mass spectrometry analyses

    Science.gov (United States)

    Paul, Subhashis; Sarkar, Sudeb; Dutta, Tanmoy; Bhattacharjee, Soumen

    2016-01-01

    Aim: The principle objective of the study was to explore the anti-arthritic properties of Acmella uliginosa (AU) (Sw.) Cass. flower in a rat model and to identify potential anti-inflammatory compounds derived from flower extracts. The synergistic role played by a combination of AU flower and Aloe vera (AV) gel crude extracts was also investigated. Materials and Methods: Male Wistar rats induced with Freund’s complete adjuvant (FCA) were used as a disease model of arthritic paw swelling. There were three experimental and two control groups, each consisting of five rats. Paw circumference and serum biochemical parameters were evaluated to investigate the role of the flower extracts in disease amelioration through a feeding schedule spanning 21 days. Gas chromatography/mass spectrometry (GC/MS) analyses were performed to search for the presence of anti-inflammatory compounds in the ethanolic and n-hexane solvent extracts of the flower. Results: As a visual cue to the experimental outcomes, FCA-induced paw swelling decreased to the normal level; and hemoglobin, serum protein, and albumin levels were significantly increased in the treated animals. The creatinine level was estimated to be normal in the experimental rats after the treatment. The combination of AU and AV showed the best recovery potential in all the studied parameters, confirming the synergistic efficacy of the herbal formulation. GC/MS analyses revealed the presence of at least 5 anti-inflammatory compounds including 9-octadecenoic acid (Z)-, phenylmethyl ester, astaxanthin, à-N-Normethadol, fenretinide that have reported anti-inflammatory/anti-arthritic properties. Conclusion: Our findings indicated that the crude flower homogenate of AU contains potential anti-inflammatory compounds which could be used as an anti-inflammatory/anti-arthritic medication. PMID:27366352

  10. Liberalisation in network based industries. An economic analysis by case studies of railway, telecommunication and energy utilities; Liberalisierung von Netzindustrien. Eine oekonomische Analyse am Beispiel der Eisenbahn, der Telekommunikation und der Leitungsgebundenen Energieversorgung

    Energy Technology Data Exchange (ETDEWEB)

    Schulze, A.

    2006-07-01

    The liberalisation of network based industries represents an economic problem, which raises on the one hand a multiplicity of theoretically unresolved questions and for which exist now on the other hand experiences in economic policy in Germany. The causes of the economic problems are not only to be found thereby in certain industry characteristics of the network based industries, but also in a missed special treatment of the network based economic sectors in the past by the economic policy. However, competition pushes in network based industries at borders, because the infrastructure necessary for the production of network based services typically represents an non-open to attack, natural monopoly in the hand of an established, vertically integrated supplier. From it extensive possibilities for the discrimination of competitors result, the competition political action need draw. It applies to analyze these in the available work and to discuss alternative solutions of the discrimination problem. (orig.)

  11. Hitchhikers’ guide to analysing bird ringing data

    Directory of Open Access Journals (Sweden)

    Harnos Andrea

    2015-12-01

    Full Text Available Bird ringing datasets constitute possibly the largest source of temporal and spatial information on vertebrate taxa available on the globe. Initially, the method was invented to understand avian migration patterns. However, data deriving from bird ringing has been used in an array of other disciplines including population monitoring, changes in demography, conservation management and to study the effects of climate change to name a few. Despite the widespread usage and importance, there are no guidelines available specifically describing the practice of data management, preparation and analyses of ringing datasets. Here, we present the first of a series of comprehensive tutorials that may help fill this gap. We describe in detail and through a real-life example the intricacies of data cleaning and how to create a data table ready for analyses from raw ringing data in the R software environment. Moreover, we created and present here the R package; ringR, designed to carry out various specific tasks and plots related to bird ringing data. Most methods described here can also be applied to a wide range of capture-recapture type data based on individual marking, regardless to taxa or research question.

  12. Analyses of containment structures with corrosion damage

    Energy Technology Data Exchange (ETDEWEB)

    Cherry, J.L. [Sandia National Labs., Albuquerque, NM (United States)

    1997-01-01

    Corrosion damage that has been found in a number of nuclear power plant containment structures can degrade the pressure capacity of the vessel. This has prompted concerns regarding the capacity of corroded containments to withstand accident loadings. To address these concerns, finite element analyses have been performed for a typical PWR Ice Condenser containment structure. Using ABAQUS, the pressure capacity was calculated for a typical vessel with no corrosion damage. Multiple analyses were then performed with the location of the corrosion and the amount of corrosion varied in each analysis. Using a strain-based failure criterion, a {open_quotes}lower bound{close_quotes}, {open_quotes}best estimate{close_quotes}, and {open_quotes}upper bound{close_quotes} failure level was predicted for each case. These limits were established by: determining the amount of variability that exists in material properties of typical containments, estimating the amount of uncertainty associated with the level of modeling detail and modeling assumptions, and estimating the effect of corrosion on the material properties.

  13. Analyses of containment structures with corrosion damage

    International Nuclear Information System (INIS)

    Corrosion damage that has been found in a number of nuclear power plant containment structures can degrade the pressure capacity of the vessel. This has prompted concerns regarding the capacity of corroded containments to withstand accident loadings. To address these concerns, finite element analyses have been performed for a typical PWR Ice Condenser containment structure. Using ABAQUS, the pressure capacity was calculated for a typical vessel with no corrosion damage. Multiple analyses were then performed with the location of the corrosion and the amount of corrosion varied in each analysis. Using a strain-based failure criterion, a open-quotes lower boundclose quotes, open-quotes best estimateclose quotes, and open-quotes upper boundclose quotes failure level was predicted for each case. These limits were established by: determining the amount of variability that exists in material properties of typical containments, estimating the amount of uncertainty associated with the level of modeling detail and modeling assumptions, and estimating the effect of corrosion on the material properties

  14. Anthocyanin analyses of Vaccinium fruit dietary supplements.

    Science.gov (United States)

    Lee, Jungmin

    2016-09-01

    Vaccinium fruit ingredients within dietary supplements were identified by comparisons with anthocyanin analyses of known Vaccinium profiles (demonstration of anthocyanin fingerprinting). Available Vaccinium supplements were purchased and analyzed, their anthocyanin profiles (based on high-performance liquid chromatography [HPLC] separation) indicated if products' fruit origin listings were authentic. Over 30% of the Vaccinium fruit (cranberry, lingonberry, bilberry, and blueberry; 14 of 45) products available as dietary supplements did not contain the fruit listed as ingredients. Six supplements contained no anthocyanins. Five others had contents differing from labeled fruit (e.g., bilberry capsules containing Andean blueberry fruit). Of the samples that did contain the specified fruit (n = 27), anthocyanin content ranged from 0.04 to 14.37 mg per capsule, tablet, or teaspoon (5 g). Approaches to utilizing anthocyanins in assessment of sample authenticity, and a discussion of the challenges with anthocyanin profiles in quality control are both presented. PMID:27625778

  15. Modelling and Analysing Socio-Technical Systems

    DEFF Research Database (Denmark)

    Aslanyan, Zaruhi; Ivanova, Marieta Georgieva; Nielson, Flemming;

    2015-01-01

    Modern organisations are complex, socio-technical systems consisting of a mixture of physical infrastructure, human actors, policies and processes. An in-creasing number of attacks on these organisations exploits vulnerabilities on all different levels, for example combining a malware attack...... with social engineering. Due to this combination of attack steps on technical and social levels, risk assessment in socio-technical systems is complex. Therefore, established risk assessment methods often abstract away the internal structure of an organisation and ignore human factors when modelling...... and assessing attacks. In our work we model all relevant levels of socio-technical systems, and propose evaluation techniques for analysing the security properties of the model. Our approach simplifies the identification of possible attacks and provides qualified assessment and ranking of attacks based...

  16. Analysing Terrorism from a Systems Thinking Perspective

    Directory of Open Access Journals (Sweden)

    Lukas Schoenenberger

    2014-02-01

    Full Text Available Given the complexity of terrorism, solutions based on single factors are destined to fail. Systems thinking offers various tools for helping researchers and policy makers comprehend terrorism in its entirety. We have developed a semi-quantitative systems thinking approach for characterising relationships between variables critical to terrorism and their impact on the system as a whole. For a better understanding of the mechanisms underlying terrorism, we present a 16-variable model characterising the critical components of terrorism and perform a series of highly focused analyses. We show how to determine which variables are best suited for government intervention, describing in detail their effects on the key variable—the political influence of a terrorist network. We also offer insights into how to elicit variables that destabilise and ultimately break down these networks. Because we clarify our novel approach with fictional data, the primary importance of this paper lies in the new framework for reasoning that it provides.

  17. Communication analyses of plant operator crews

    International Nuclear Information System (INIS)

    Elucidation of crew communication aspects is required to improve the man-man interface which supports operators' diagnoses and decisions. Experiments to clarify operator performance under abnormal condition were evaluated by protocol analyses, interviews, etc. using a training simulator. We had the working hypothesis, based on experimental observations, that operator performance can be evaluated by analysis of crew communications. The following four approaches were tried to evaluate operator performance. (1) Crew performance was quantitatively evaluated by the number of tasks undertaken by an operator crew. (2) The group thinking process was clarified by cognition-communication flow. (3) The group response process was clarified by movement flow. (4) Quantitative indexes for evaluating crew performance were considered to be represented by the amount of information effectively exchanged among operators. (author)

  18. What can we do about exploratory analyses in clinical trials?

    Science.gov (United States)

    Moyé, Lem

    2015-11-01

    The research community has alternatively embraced then repudiated exploratory analyses since the inception of clinical trials in the middle of the twentieth century. After a series of important but ultimately unreproducible findings, these non-prospectively declared evaluations were relegated to hypothesis generating. Since the majority of evaluations conducted in clinical trials with their rich data sets are exploratory, the absence of their persuasive power adds to the inefficiency of clinical trial analyses in an atmosphere of fiscal frugality. However, the principle argument against exploratory analyses is not based in statistical theory, but pragmatism and observation. The absence of any theoretical treatment of exploratory analyses postpones the day when their statistical weaknesses might be repaired. Here, we introduce examination of the characteristics of exploratory analyses from a probabilistic and statistical framework. Setting the obvious logistical concerns aside (i.e., the absence of planning produces poor precision), exploratory analyses do not appear to suffer from estimation theory weaknesses. The problem appears to be a difficulty in what is actually reported as the p-value. The use of Bayes Theorem provides p-values that are more in line with confirmatory analyses. This development may inaugurate a body of work that would lead to the readmission of exploratory analyses to a position of persuasive power in clinical trials. PMID:26390962

  19. What can we do about exploratory analyses in clinical trials?

    Science.gov (United States)

    Moyé, Lem

    2015-11-01

    The research community has alternatively embraced then repudiated exploratory analyses since the inception of clinical trials in the middle of the twentieth century. After a series of important but ultimately unreproducible findings, these non-prospectively declared evaluations were relegated to hypothesis generating. Since the majority of evaluations conducted in clinical trials with their rich data sets are exploratory, the absence of their persuasive power adds to the inefficiency of clinical trial analyses in an atmosphere of fiscal frugality. However, the principle argument against exploratory analyses is not based in statistical theory, but pragmatism and observation. The absence of any theoretical treatment of exploratory analyses postpones the day when their statistical weaknesses might be repaired. Here, we introduce examination of the characteristics of exploratory analyses from a probabilistic and statistical framework. Setting the obvious logistical concerns aside (i.e., the absence of planning produces poor precision), exploratory analyses do not appear to suffer from estimation theory weaknesses. The problem appears to be a difficulty in what is actually reported as the p-value. The use of Bayes Theorem provides p-values that are more in line with confirmatory analyses. This development may inaugurate a body of work that would lead to the readmission of exploratory analyses to a position of persuasive power in clinical trials.

  20. Pawnee Nation Energy Option Analyses

    Energy Technology Data Exchange (ETDEWEB)

    Matlock, M.; Kersey, K.; Riding In, C.

    2009-07-21

    Pawnee Nation of Oklahoma Energy Option Analyses In 2003, the Pawnee Nation leadership identified the need for the tribe to comprehensively address its energy issues. During a strategic energy planning workshop a general framework was laid out and the Pawnee Nation Energy Task Force was created to work toward further development of the tribe’s energy vision. The overarching goals of the “first steps” project were to identify the most appropriate focus for its strategic energy initiatives going forward, and to provide information necessary to take the next steps in pursuit of the “best fit” energy options. Description of Activities Performed The research team reviewed existing data pertaining to the availability of biomass (focusing on woody biomass, agricultural biomass/bio-energy crops, and methane capture), solar, wind and hydropower resources on the Pawnee-owned lands. Using these data, combined with assumptions about costs and revenue streams, the research team performed preliminary feasibility assessments for each resource category. The research team also reviewed available funding resources and made recommendations to Pawnee Nation highlighting those resources with the greatest potential for financially-viable development, both in the near-term and over a longer time horizon. Findings and Recommendations Due to a lack of financial incentives for renewable energy, particularly at the state level, combined mediocre renewable energy resources, renewable energy development opportunities are limited for Pawnee Nation. However, near-term potential exists for development of solar hot water at the gym, and an exterior wood-fired boiler system at the tribe’s main administrative building. Pawnee Nation should also explore options for developing LFGTE resources in collaboration with the City of Pawnee. Significant potential may also exist for development of bio-energy resources within the next decade. Pawnee Nation representatives should closely monitor

  1. Reconstructing Meat Consumption through Biomarker Analyses of Paleofeces

    OpenAIRE

    Jenna M. Battillo; Abigail E. Fisher

    2015-01-01

    This mini-review outlines three underutilized approaches for studying meat-based biomarkers in archaeological paleofeces that we expect will increase in significance within the field. Myoglobin, stable isotope, and aDNA analyses all have untapped potential to inform meat-based dietary constituents.

  2. Assignment of quinone derivatives as the main compound class composing 'interstellar' grains based on both polarity ions detected by the 'Cometary and Interstellar Dust Analyser' (CIDA) onboard the spacecraft STARDUST.

    Science.gov (United States)

    Krueger, Franz R; Werther, Wolfgang; Kissel, Jochen; Schmid, Erich R

    2004-01-01

    The 'Cometary and Interstellar Dust Analyser' (CIDA) is a particle impact time-of-flight mass spectrometer onboard the NASA spacecraft STARDUST. A series of positive and negative ion mass spectra from the impact of (apparently) interstellar dust particles has been collected since 1999. In the meantime laboratory work has been performed to better understand the ion formation processes of organic grains impacting at those speeds (>15 km/s) and to relate them to some other ion formation methods. The key ion types were the negative ions, with some additional information from the positive ions. Here, first the principal ion formation rules are briefly reviewed. Secondly, the common substance class is inferred mainly by the application of exclusion principles, and appears to be partly condensed aromatic and quinonoid compounds with high oxygen and low nitrogen content. Oxygen appears to be present in quinone-type structures with condensed aromatic rings, possibly with furan substructures and some hydroxyl moieties. Some nitrogen may be present in pyrrole- or quinoline-type structures. Considerations of thermodynamics and radiation physics of these dust particles within the solar system are consistent with this interpretation. Quinoenzyme cofactors such as the known compound pyrroloquinoline-quinone (PQQ) and its subconstituents would be expected to yield similar mass spectra.

  3. Liver volume, intrahepatic fat and body weight in the course of a lifestyle interventional study. Analysis with quantitative MR-based methods; Lebervolumen, Leberfettanteil und Koerpergewicht im Verlauf einer Lebensstilinterventionsstudie. Eine Analyse mit quantitativen MR-basierten Methoden

    Energy Technology Data Exchange (ETDEWEB)

    Bongers, M.N. [Klinikum der Eberhard-Karls-Universitaet Tuebingen, Abteilung fuer Diagnostische und Interventionelle Radiologie, Tuebingen (Germany); Universitaetsklinikum Tuebingen, Sektion fuer Experimentelle Radiologie der Abteilung fuer Diagnostische und Interventionelle Radiologie, Tuebingen (Germany); Stefan, N.; Fritsche, A.; Haering, H.U. [Universitaetsklinikum Tuebingen, Innere Medizin IV - Endokrinologie und Diabetologie, Angiologie, Nephrologie und Klinische Chemie, Tuebingen (Germany); Helmholtz-Zentrum Muenchen an der Universitaet Tuebingen, Institut fuer Diabetes-Forschung und Metabolische Erkrankungen (IDM), Tuebingen (Germany); Nikolaou, K. [Klinikum der Eberhard-Karls-Universitaet Tuebingen, Abteilung fuer Diagnostische und Interventionelle Radiologie, Tuebingen (Germany); Schick, F. [Universitaetsklinikum Tuebingen, Sektion fuer Experimentelle Radiologie der Abteilung fuer Diagnostische und Interventionelle Radiologie, Tuebingen (Germany); Machann, J. [Universitaetsklinikum Tuebingen, Sektion fuer Experimentelle Radiologie der Abteilung fuer Diagnostische und Interventionelle Radiologie, Tuebingen (Germany); Helmholtz-Zentrum Muenchen an der Universitaet Tuebingen, Institut fuer Diabetes-Forschung und Metabolische Erkrankungen (IDM), Tuebingen (Germany); Deutsches Zentrum fuer Diabetesforschung (DZD), Neuherberg (Germany)

    2015-04-01

    The aim of this study was to investigate potential associations between changes in liver volume, the amount of intrahepatic lipids (IHL) and body weight during lifestyle interventions. In a prospective study 150 patients with an increased risk for developing type 2 diabetes mellitus were included who followed a caloric restriction diet for 6 months. In the retrospective analysis 18 women and 9 men (age range 22-71 years) with an average body mass index (BMI) of 32 kg/m{sup 2} were enrolled. The liver volume was determined at the beginning and after 6 months by three-dimensional magnetic resonance imaging (3D-MRI, echo gradient, opposed-phase) and IHLs were quantified by volume-selective MR spectroscopy in single voxel stimulated echo acquisition mode (STEAM). Univariable and multivariable correlation analyses between changes of liver volume (Δliver volume), intrahepatic lipids (ΔIHL) and body weight (ΔBW) were performed. Univariable correlation analysis in the whole study cohort showed associations between ΔIHL and ΔBW (r = 0.69; p < 0.0001), ΔIHL and Δliver volume (r = 0.66; p = 0.0002) as well as ΔBW and Δliver volume (r = 0.5; p = 0.0073). Multivariable correlation analysis revealed that changes of liver volume are primarily determined by changes in IHL independent of changes in body weight (β = 0.0272; 95 % CI: 0.0155-0.034; p < 0.0001). Changes of liver volume during lifestyle interventions are independent of changes of body weight primarily determined by changes of IHL. These results show the reversibility of augmented liver volume in steatosis if it is possible to reduce IHLs during lifestyle interventions. (orig.) [German] Lassen sich Zusammenhaenge zwischen den Aenderungen des Lebervolumens, des Anteils intrahepatischer Lipide und des Koerpergewichts waehrend einer Lebensstilintervention feststellen ?In einer prospektiven Interventionsstudie unterzogen sich 150 Probanden mit erhoehtem Diabetesrisiko fuer 6 Monate einer diaetetischen

  4. Zamak samples analyses using EDXRF

    Energy Technology Data Exchange (ETDEWEB)

    Assis, J.T. de; Lima, I.; Monin, V., E-mail: joaquim@iprj.uerj.b, E-mail: inaya@iprj.uerj.b, E-mail: monin@iprj.uerj.b [Universidade do Estado do Rio de Janeiro (UERJ), Nova Friburgo, RJ (Brazil). Inst. Politecnico. Dept. de Engenharia Mecanica e Energia; Anjos, M. dos; Lopes, R.T., E-mail: ricardo@lin.ufrj.b [Coordenacao dos Programas de Pos-graduacao de Engenharia (COPPE/UFRJ), Rio de Janeiro, RJ (Brazil). Lab. de Instrumentacao Nuclear; Alves, H., E-mail: marcelin@uerj.b, E-mail: haimon.dlafis@gmail.co [Universidade do Estado do Rio de Janeiro (UERJ), Rio de Janeiro, RJ (Brazil). Inst. de Fisica. Dept. de Fisica Aplicada e Termodinamica

    2009-07-01

    Zamak is a family of alloys with a base metal of zinc and alloying elements of aluminium, magnesium and copper. Among all non-ferrous metal alloys, Zamak is one that has more applications, for their physical, mechanical properties and easy ability to electrodeposition. It has good resistance to corrosion, traction, shock and wear. Its low melting point (approximately 400 deg C) allows greater durability of the mold, allowing greater production of melted series parts. Zamak can be used in several kinds of areas, such as, to produce residential and industrial locks, construction and carpentry components, refrigerators hinges and so on. It is observed that in some cases the quality of these products is not very good. The problem should be the quality of Zamak alloy purchased by the industries. One possible technique that can be used to investigate the quality of these alloys is Energy Dispersive X-ray fluorescence. In this paper we present results of eight samples of Zamak alloy by this technique and it was possible to classify Zamak alloy and verify some irregularity on these alloys. (author)

  5. BWR stability analyses at BNL

    International Nuclear Information System (INIS)

    The March 9, 1988 instability at the LaSalle County-2 boiling water reactor power plant at Seneca, IL was simulated with Brookhaven National Laboratory's (BNL's) Engineering Plant Analyzer (EPA) for the purpose of demonstrating that the EPA is suitable for simulating large-amplitude, limit-cycle power and flow oscillations. It was shown in fall of 1988, by comparing all the available plant data from the STARTREC recording system of LaSalle-2 with EPA simulation results, that the EPA reproduces the LaSalle-2 oscillations without the use of stabilizing or destabilizing model or parameter modifications. The power vs. flow map of the LaSalle-2 plant was also reproduced at five lines of constant control rod positions. The LaSalle-2 stability boundary was established with the EPA and confirmed within ±15% accuracy by comparing the EPA results with the results of the frequency domain code LAPUR of Oak Ridge National Laboratory. Comparisons of EPA simulation results with plant data from three Peach Bottom stability tests show an agreement, based on mean and standard deviation, of -10±28%, -1±40% and +28±52% (low power) in the gain of the pressure to power transfer functions. This demonstrates that the time domain code HIPA in the EPA is capable of simulating instabilities

  6. Hormone Receptor Expression Analyses in Neoplastic and Non-Neoplastic Canine Mammary Tissue by a Bead Based Multiplex Branched DNA Assay: A Gene Expression Study in Fresh Frozen and Formalin-Fixed, Paraffin-Embedded Samples.

    Science.gov (United States)

    Mohr, Annika; Lüder Ripoli, Florenza; Hammer, Susanne Conradine; Willenbrock, Saskia; Hewicker-Trautwein, Marion; Kiełbowicz, Zdzisław; Murua Escobar, Hugo; Nolte, Ingo

    2016-01-01

    Immunohistochemistry (IHC) is currently considered the method of choice for steroid hormone receptor status evaluation in human breast cancer and, therefore, it is commonly utilized for assessing canine mammary tumors. In case of low hormone receptor expression, IHC is limited and thus is complemented by molecular analyses. In the present study, a multiplex bDNA assay was evaluated as a method for hormone receptor gene expression detection in canine mammary tissues. Estrogen receptor (ESR1), progesterone receptor (PGR), prolactin receptor (PRLR) and growth hormone receptor (GHR) gene expressions were evaluated in neoplastic and non-neoplastic canine mammary tissues. A set of 119 fresh frozen and 180 formalin-fixed, paraffin-embedded (FFPE) was comparatively analyzed and used for assay evaluation. Furthermore, a possible association between the hormone receptor expression in different histological subtypes of canine malignant mammary tumors and the castration status, breed and invasive growth of the tumor were analyzed. The multiplex bDNA assay proved to be more sensitive for fresh frozen specimens. Hormone receptor expression found was significantly decreased in malignant mammary tumors in comparison to non-neoplastic tissue and benign mammary tumors. Among the histological subtypes the lowest gene expression levels of ESR1, PGR and PRLR were found in solid, anaplastic and ductal carcinomas. In summary, the evaluation showed that the measurement of hormone receptors with the multiplex bDNA assay represents a practicable method for obtaining detailed quantitative information about gene expression in canine mammary tissue for future studies. Still, comparison with IHC or quantitative real-time PCR is needed for further validation of the present method. PMID:27649560

  7. Aerothermodynamic Analyses of Towed Ballutes

    Science.gov (United States)

    Gnoffo, Peter A.; Buck, Greg; Moss, James N.; Nielsen, Eric; Berger, Karen; Jones, William T.; Rudavsky, Rena

    2006-01-01

    A ballute (balloon-parachute) is an inflatable, aerodynamic drag device for application to planetary entry vehicles. Two challenging aspects of aerothermal simulation of towed ballutes are considered. The first challenge, simulation of a complete system including inflatable tethers and a trailing toroidal ballute, is addressed using the unstructured-grid, Navier-Stokes solver FUN3D. Auxiliary simulations of a semi-infinite cylinder using the rarefied flow, Direct Simulation Monte Carlo solver, DSV2, provide additional insight into limiting behavior of the aerothermal environment around tethers directly exposed to the free stream. Simulations reveal pressures higher than stagnation and corresponding large heating rates on the tether as it emerges from the spacecraft base flow and passes through the spacecraft bow shock. The footprint of the tether shock on the toroidal ballute is also subject to heating amplification. Design options to accommodate or reduce these environments are discussed. The second challenge addresses time-accurate simulation to detect the onset of unsteady flow interactions as a function of geometry and Reynolds number. Video of unsteady interactions measured in the Langley Aerothermodynamic Laboratory 20-Inch Mach 6 Air Tunnel and CFD simulations using the structured grid, Navier-Stokes solver LAURA are compared for flow over a rigid spacecraft-sting-toroid system. The experimental data provides qualitative information on the amplitude and onset of unsteady motion which is captured in the numerical simulations. The presence of severe unsteady fluid - structure interactions is undesirable and numerical simulation must be able to predict the onset of such motion.

  8. Nuclear Analyses For ITER NB System

    International Nuclear Information System (INIS)

    Full text: Detailed nuclear analyses for the latest ITER NB system are required to ensure that NB design conforms to the nuclear regulations and licensing. A variety of nuclear analyses was conducted for the NB system including a tokamak building and outside the building by using Monte Carlo code MCNP5.14, activation code ACT-4 and Fusion Evaluated Nuclear Data Library FENDL-2.1. A special “Direct 1-step Monte Carlo” method is adopted for the shutdown dose rate calculation. The NB system and the tokamak building are very complicated, and it is practically impossible to make geometry input data manually. We used the automatic converter code GEOMIT from CAD data to MCNP geometry input data. GEOMIT was improved for these analyses, and the conversion performance was drastically enhanced. Void cells in MCNP input data were generated by subtracting solid cells data from simple rectangular void cells. The CAD data were successfully converted to MCNP geometry input data, and void data were also adequately produced with GEOMIT. The effective dose rates at external zones (non-controlled areas) should be less than 80 μSv/month according to French regulations. Shielding structures are under analysis to reduce the radiation streaming through the openings. We are confirming that the criterion is satisfied for the NB system. The effective dose rate data in the NB cell after shutdown are necessary to check the dose rate during possible rad-works for maintenance. Dose rates for workers must be maintained as low as reasonably achievable, and at locations where hands-on maintenance is performed should be below a target of 100 μSv/h at 12 days after shutdown. We are specifying the adequate zoning and area where hands-on maintenance can be allowed, based on the analysis results. The cask design for transport activated NB components is an important issue, and we are calculating the effective dose rates. The target of the effective dose rate from the activated NB components is less

  9. Virus-Induced Gene Silencing-Based Functional Analyses Revealed the Involvement of Several Putative Trehalose-6-Phosphate Synthase/Phosphatase Genes in Disease Resistance against Botrytis cinerea and Pseudomonas syringae pv. tomato DC3000 in Tomato.

    Science.gov (United States)

    Zhang, Huijuan; Hong, Yongbo; Huang, Lei; Liu, Shixia; Tian, Limei; Dai, Yi; Cao, Zhongye; Huang, Lihong; Li, Dayong; Song, Fengming

    2016-01-01

    Trehalose and its metabolism have been demonstrated to play important roles in control of plant growth, development, and stress responses. However, direct genetic evidence supporting the functions of trehalose and its metabolism in defense response against pathogens is lacking. In the present study, genome-wide characterization of putative trehalose-related genes identified 11 SlTPSs for trehalose-6-phosphate synthase, 8 SlTPPs for trehalose-6-phosphate phosphatase and one SlTRE1 for trehalase in tomato genome. Nine SlTPSs, 4 SlTPPs, and SlTRE1 were selected for functional analyses to explore their involvement in tomato disease resistance. Some selected SlTPSs, SlTPPs, and SlTRE1 responded with distinct expression induction patterns to Botrytis cinerea and Pseudomonas syringae pv. tomato (Pst) DC3000 as well as to defense signaling hormones (e.g., salicylic acid, jasmonic acid, and a precursor of ethylene). Virus-induced gene silencing-mediated silencing of SlTPS3, SlTPS4, or SlTPS7 led to deregulation of ROS accumulation and attenuated the expression of defense-related genes upon pathogen infection and thus deteriorated the resistance against B. cinerea or Pst DC3000. By contrast, silencing of SlTPS5 or SlTPP2 led to an increased expression of the defense-related genes upon pathogen infection and conferred an increased resistance against Pst DC3000. Silencing of SlTPS3, SlTPS4, SlTPS5, SlTPS7, or SlTPP2 affected trehalose level in tomato plants with or without infection of B. cinerea or Pst DC3000. These results demonstrate that SlTPS3, SlTPS4, SlTPS5, SlTPS7, and SlTPP2 play roles in resistance against B. cinerea and Pst DC3000, implying the importance of trehalose and tis metabolism in regulation of defense response against pathogens in tomato. PMID:27540389

  10. Contributions of biomass/biofuel burning to organic aerosols and particulate matter in Tanzania, East Africa, based on analyses of ionic species, organic and elemental carbon, levoglucosan and mannosan

    Directory of Open Access Journals (Sweden)

    S. L. Mkoma

    2013-10-01

    Full Text Available Atmospheric aerosol samples of PM2.5 and PM10 were collected at a rural site in Tanzania, East Africa, in 2011 during wet and dry seasons and were analysed for carbonaceous components, levoglucosan, mannosan and water-soluble inorganic ions. The contributions of biomass/biofuel burning to the organic carbon (OC and particulate matter (PM mass were estimated to be 46–52% and 87–13%, respectively. The mean mass concentrations of PM2.5 and PM10 were 28 ± 6 μg m−3 and 47 ± 8 μg m−3 in wet season, and 39 ± 10 μg m−3 and 61 ± 19 μg m−3 in dry season, respectively. Total carbon (TC accounted for 16–19% of the PM2.5 mass and 13–15% of the PM10 mass. On average, 86 to 89% of TC in PM2.5 and 87 to 90% of TC in PM10 was OC, of which 67–72% and 63% was found to be water-soluble organic carbon (WSOC in PM2.5 and PM10, respectively. We found that concentrations of levoglucosan and mannosan (specific organic tracers of pyrolysis of cellulose well correlated with non-sea-salt potassium (nss-K+ (r2 = 0.56–0.75, OC (r2 = 0.75–0.96 and WSOC (r2 = 0.52–0.78. The K+ / OC ratios varied from 0.06 to 0.36 in PM2.5 and from 0.03 to 0.36 in PM10 with slightly higher ratios in dry season. Mean percent ratios of levoglucosan and mannosan to OC were found to be 3–4% for PM2.5 and PM10 in both seasons. We found lower levoglucosan / K+ ratios and higher K+ / EC (elemental carbon ratios in the biomass-burning aerosols from Tanzania than those reported from other regions. This feature is consistent with the high levels of potassium reported in the soils of Morogoro, Tanzania, suggesting an importance of direct emission of potassium by soil resuspension although K+ is present mostly in fine particles. It is also likely that biomass burning of vegetation of Tanzania emits high levels of potassium that may be enriched in plant tissues. The present study demonstrates that emissions from mixed biomass- and biofuel-burning activities largely

  11. Virus-Induced Gene Silencing-Based Functional Analyses Revealed the Involvement of Several Putative Trehalose-6-Phosphate Synthase/Phosphatase Genes in Disease Resistance against Botrytis cinerea and Pseudomonas syringae pv. tomato DC3000 in Tomato

    Science.gov (United States)

    Zhang, Huijuan; Hong, Yongbo; Huang, Lei; Liu, Shixia; Tian, Limei; Dai, Yi; Cao, Zhongye; Huang, Lihong; Li, Dayong; Song, Fengming

    2016-01-01

    Trehalose and its metabolism have been demonstrated to play important roles in control of plant growth, development, and stress responses. However, direct genetic evidence supporting the functions of trehalose and its metabolism in defense response against pathogens is lacking. In the present study, genome-wide characterization of putative trehalose-related genes identified 11 SlTPSs for trehalose-6-phosphate synthase, 8 SlTPPs for trehalose-6-phosphate phosphatase and one SlTRE1 for trehalase in tomato genome. Nine SlTPSs, 4 SlTPPs, and SlTRE1 were selected for functional analyses to explore their involvement in tomato disease resistance. Some selected SlTPSs, SlTPPs, and SlTRE1 responded with distinct expression induction patterns to Botrytis cinerea and Pseudomonas syringae pv. tomato (Pst) DC3000 as well as to defense signaling hormones (e.g., salicylic acid, jasmonic acid, and a precursor of ethylene). Virus-induced gene silencing-mediated silencing of SlTPS3, SlTPS4, or SlTPS7 led to deregulation of ROS accumulation and attenuated the expression of defense-related genes upon pathogen infection and thus deteriorated the resistance against B. cinerea or Pst DC3000. By contrast, silencing of SlTPS5 or SlTPP2 led to an increased expression of the defense-related genes upon pathogen infection and conferred an increased resistance against Pst DC3000. Silencing of SlTPS3, SlTPS4, SlTPS5, SlTPS7, or SlTPP2 affected trehalose level in tomato plants with or without infection of B. cinerea or Pst DC3000. These results demonstrate that SlTPS3, SlTPS4, SlTPS5, SlTPS7, and SlTPP2 play roles in resistance against B. cinerea and Pst DC3000, implying the importance of trehalose and tis metabolism in regulation of defense response against pathogens in tomato. PMID:27540389

  12. Virus-Induced Gene Silencing-Based Functional Analyses Revealed the Involvement of Several Putative Trehalose-6-Phosphate Synthase/Phosphatase Genes in Disease Resistance against Botrytis cinerea and Pseudomonas syringae pv. tomato DC3000 in Tomato

    Science.gov (United States)

    Zhang, Huijuan; Hong, Yongbo; Huang, Lei; Liu, Shixia; Tian, Limei; Dai, Yi; Cao, Zhongye; Huang, Lihong; Li, Dayong; Song, Fengming

    2016-01-01

    Trehalose and its metabolism have been demonstrated to play important roles in control of plant growth, development, and stress responses. However, direct genetic evidence supporting the functions of trehalose and its metabolism in defense response against pathogens is lacking. In the present study, genome-wide characterization of putative trehalose-related genes identified 11 SlTPSs for trehalose-6-phosphate synthase, 8 SlTPPs for trehalose-6-phosphate phosphatase and one SlTRE1 for trehalase in tomato genome. Nine SlTPSs, 4 SlTPPs, and SlTRE1 were selected for functional analyses to explore their involvement in tomato disease resistance. Some selected SlTPSs, SlTPPs, and SlTRE1 responded with distinct expression induction patterns to Botrytis cinerea and Pseudomonas syringae pv. tomato (Pst) DC3000 as well as to defense signaling hormones (e.g., salicylic acid, jasmonic acid, and a precursor of ethylene). Virus-induced gene silencing-mediated silencing of SlTPS3, SlTPS4, or SlTPS7 led to deregulation of ROS accumulation and attenuated the expression of defense-related genes upon pathogen infection and thus deteriorated the resistance against B. cinerea or Pst DC3000. By contrast, silencing of SlTPS5 or SlTPP2 led to an increased expression of the defense-related genes upon pathogen infection and conferred an increased resistance against Pst DC3000. Silencing of SlTPS3, SlTPS4, SlTPS5, SlTPS7, or SlTPP2 affected trehalose level in tomato plants with or without infection of B. cinerea or Pst DC3000. These results demonstrate that SlTPS3, SlTPS4, SlTPS5, SlTPS7, and SlTPP2 play roles in resistance against B. cinerea and Pst DC3000, implying the importance of trehalose and tis metabolism in regulation of defense response against pathogens in tomato.

  13. Pawnee Nation Energy Option Analyses

    Energy Technology Data Exchange (ETDEWEB)

    Matlock, M.; Kersey, K.; Riding In, C.

    2009-07-31

    In 2003, the Pawnee Nation leadership identified the need for the tribe to comprehensively address its energy issues. During a strategic energy planning workshop a general framework was laid out and the Pawnee Nation Energy Task Force was created to work toward further development of the tribe’s energy vision. The overarching goals of the “first steps” project were to identify the most appropriate focus for its strategic energy initiatives going forward, and to provide information necessary to take the next steps in pursuit of the “best fit” energy options. Based on the request of Pawnee Nation’s Energy Task Force the research team, consisting Tribal personnel and Summit Blue Consulting, focused on a review of renewable energy resource development potential, funding sources and utility organizational along with energy savings options. Elements of the energy demand forecasting and characterization and demand side options review remained in the scope of work, but were only addressed at a high level. Description of Activities Performed Renewable Energy Resource Development Potential The research team reviewed existing data pertaining to the availability of biomass (focusing on woody biomass, agricultural biomass/bio-energy crops, and methane capture), solar, wind and hydropower resources on the Pawnee-owned lands. Using these data, combined with assumptions about costs and revenue streams, the research team performed preliminary feasibility assessments for each resource category. The research team also reviewed available funding resources and made recommendations to Pawnee Nation highlighting those resources with the greatest potential for financially-viable development, both in the near-term and over a longer time horizon. Energy Efficiency Options While this was not a major focus of the project, the research team highlighted common strategies for reducing energy use in buildings. The team also discussed the benefits of adopting a building energy code and

  14. Multi-component pre-stack time-imaging and migration-based velocity analysis in transversely isotropic media; Imagerie sismique multicomposante et analyse de vitesse de migration en milieu transverse isotrope

    Energy Technology Data Exchange (ETDEWEB)

    Gerea, C.V.

    2001-06-01

    Complementary to the recording of compressional (P-) waves, the observation of P-S converted waves has recently been receiving specific attention. This is mainly due to their tremendous potential as a tool for fracture and lithology characterization, imaging sediments in gas saturated rocks, and imaging shallow sediments with higher resolution than conventional P-P data. In a conventional marine seismic survey, we cannot record P-to-S converted-wave energy since the fluids cannot support shear-wave strain. Thus, to capture the converted-wave energy, we need to record it at the water-bottom casing an ocean-bottom cable (OBC). The S-waves recorded at the seabed are mainly converted from P to S (i.e., PS-waves or C-waves) at the subsurface reflectors. The most accurate way to image seismic data is pre-stack depth migration. In this thesis, I develop a numerically efficient 2.5-D true-amplitude elastic Kirchhoff pre-stack migration algorithm designed to handle OBC data gathered along a single line. All the kinematic and dynamic elastic Green's functions required in the computation of true-amplitude weight term of Kirchhoff summation, are based on the non-hyperbolic explicit approximations of P- and SV-wave travel-times in layered transversely isotropic (VTI) media. Hence, this elastic imaging algorithm is very well-suited for migration-based velocity analysis techniques, for which fast, robust and iterative pre-stack migration is desired. In this thesis, I approach also the topic of anisotropic velocity model building for elastic pre-stack time-imaging. and propose an original methodology for joint PP-PS migration-based velocity analysis (MVA) in layered VTI anisotropic media. Tests on elastic synthetic and real OBC seismic data ascertain the validity of the pre-stack migration algorithm and velocity analysis methodology. (author)

  15. Sources of Groundwater Based on Helium Analyses in and near the Freshwater/Saline-Water Transition Zone of the San Antonio Segment of the Edwards Aquifer, South-Central Texas, 2002-03

    Science.gov (United States)

    Hunt, Andrew G.; Lambert, Rebecca B.; Fahlquist, Lynne

    2010-01-01

    This report evaluates dissolved noble gas data, specifically helium-3 and helium-4, collected by the U.S. Geological Survey, in cooperation with the San Antonio Water System, during 2002-03. Helium analyses are used to provide insight into the sources of groundwater in the freshwater/saline-water transition zone of the San Antonio segment of the Edwards aquifer. Sixty-nine dissolved gas samples were collected from 19 monitoring wells (categorized as fresh, transitional, or saline on the basis of dissolved solids concentration in samples from the wells or from fluid-profile logging of the boreholes) arranged in five transects, with one exception, across the freshwater/saline-water interface (the 1,000-milligrams-per-liter dissolved solids concentration threshold) of the Edwards aquifer. The concentration of helium-4 (the dominant isotope in atmospheric and terrigenic helium) in samples ranged from 63 microcubic centimeters per kilogram at standard temperature (20 degrees Celsius) and pressure (1 atmosphere) in a well in the East Uvalde transect to 160,587 microcubic centimeters per kilogram at standard temperature and pressure in a well in the Kyle transect. Helium-4 concentrations in the 10 saline wells generally increase from the western transects to the eastern transects. Increasing helium-4 concentrations from southwest to northeast in the transition zone, indicating increasing residence time of groundwater from southwest to northeast, is consistent with the longstanding conceptualization of the Edwards aquifer in which water recharges in the southwest, flows generally northeasterly (including in the transition zone, although more slowly than in the fresh-water zone), and discharges at major springs in the northeast. Excess helium-4 was greater than 1,000 percent for 60 of the 69 samples, indicating that terrigenic helium is largely present and that most of the excess helium-4 comes from sources other than the atmosphere. The helium data of this report cannot be

  16. Spectroscopic analyses on interaction of o-Vanillin- D-Phenylalanine, o-Vanillin- L-Tyrosine and o-Vanillin- L-Levodopa Schiff Bases with bovine serum albumin (BSA)

    Science.gov (United States)

    Gao, Jingqun; Guo, Yuwei; Wang, Jun; Wang, Zhiqiu; Jin, Xudong; Cheng, Chunping; Li, Ying; Li, Kai

    2011-04-01

    In this work, three o-Vanillin Schiff Bases (o-VSB: o-Vanillin- D-Phenylalanine (o-VDP), o-Vanillin- L-Tyrosine (o-VLT) and o-Vanillin- L-Levodopa (o-VLL)) with alanine constituent were synthesized by direct reflux method in ethanol solution, and then were used to study the interaction to bovine serum albumin (BSA) molecules by fluorescence spectroscopy. Based on the fluorescence quenching calculation, the bimolecular quenching constant ( Kq), apparent quenching constant ( Ksv), effective binding constant ( KA) and corresponding dissociation constant ( KD) as well as binding site number ( n) were obtained. In addition, the binding distance ( r) was also calculated according to Foster's non-radioactive energy transfer theory. The results show that these three o-VSB can efficiently bind to BSA molecules, but the binding array order is o-VDP-BSA > o-VLT-BSA > o-VLL-BSA. Synchronous fluorescence spectroscopy indicates that the o-VDP is more accessibility to tryptophan (Trp) residues of BSA molecules than to tyrosine (Tyr) residues. Nevertheless, the o-VLT and o-VLL are more accessibility to Tyr residues than to Trp residues.

  17. Effect of protonation on the isomerization properties of n-butylamine Schiff base of isomeric retinal as revealed by direct HPLC analyses: selection of isomerization pathways by retinal proteins.

    Science.gov (United States)

    Koyama, Y; Kubo, K; Komori, M; Yasuda, H; Mukai, Y

    1991-09-01

    Alumina adsorption chromatography and ion-pair reversed-phase chromatography were developed to analyze the isomers of unprotonated and protonated n-butylamine Schiff base of retinal (RSB and PRSB), respectively. Photoisomerization starting from the all-trans, 11-cis and 13-cis isomers was traced for RSB in n-hexane, acetonitrile, methanol and 1-butanol, and for PRSB in methanol, acetonitrile and 1-butanol. The quantum yields of photoisomerization for the all-trans, 9-cis, 11-cis and 13-cis isomers were determined for RSB and PRSB in the above solvents except 1-butanol. On the other hand, photoisomerization of isomeric retinal bound (through Schiff base linkage) to bovine serum albumin (RBSA) in aqueous solution (pH 3, 7 and 12) as well as thermal isomerization of RSB (in n-hexane), PRSB (in methanol) and RBSA (in aqueous solution, pH 7) were traced starting from the all-trans, 11-cis, and 13-cis isomers. Protonation of RSB drastically changes the pathway of photoisomerization and increases the quantum yields of isomeric RSB. The solvent polarity increases the quantum yields of RSB differently depending on the configuration. Protonation enhances thermal isomerization also. The results of the above model systems are compared with those of retinal proteins to rationalize their selection of the particular isomerization pathways.

  18. 高导热中间相沥青基炭纤维的微观结构分析%Microstructure analyses of mesophase pitch-based carbon fibers with high thermal conductivity

    Institute of Scientific and Technical Information of China (English)

    袁观明; 李轩科; 董志军; 周婧; 崔正威; 从野; 张中伟; 王俊山

    2011-01-01

    中间相沥青基炭纤维具有低电阻、高导热特性,是目前最具发展前景的功能型导热、散热材料,但是国内对其微观结构和性能的研究报道较少。对国外高导热中间相沥青基炭纤维的微观结构和形貌进行了分析,同时将实验室研发的不同截面形状中间相沥青基炭纤维进行比较。研究结果表明中间相沥青基炭纤维具有的高导热特性源于其内部三维有序堆积的类石墨层状结构和较为完整生长的石墨晶体。热处理温度越高,其类石墨晶体生长越完善,层片取向程度越高。与圆形截面辐射状结构中间相沥青炭纤维相比,带状截面炭纤维有效解决了劈裂问题,其石墨片层间距为0.337nm,层片堆积高度达到26.77nm,轴向热导率高于800W/(m.K)。%Mesophase pitch-based carbon fibers are most attractive candidates for thermally conductive materials and heat dissipation materials due to their low electrical resistivity and high thermal conductivity,but there are few research reports on their microstructrues and properties in our country.The microstructure and morphology of high conductive mesophase pith-based carbon fibers prepared by foreign country were analyzed in contrast with those of mesophase pitch-based carbon fibers with different transverse shapes fabricated in our laboratory.The results show that the high thermal conductivity of mesophase pitch-based carbon fibers is owing to their three-dimensional structure of graphite layers with oriented stacking and prefect graphite crystals.The higher heat-treated temperature,the more perfect growth of graphite crystals,and the more orientation of structure.In comparison to round-shaped mesophase pitch-based carbon fibers with radial structure in transverse section,the ribbon-shaped carbon fibers efficiently resolve the problem of splitting crack,which possess a interlayer spacing of 0.337nm,a crystallite thickness of 26.77nm,and a high thermal conductivity

  19. Explore and Analyse of Development Model of Eco-Agricultural Tourism Based on Circular Economy Theory%基于循环经济理论的生态农业旅游发展模式探析

    Institute of Scientific and Technical Information of China (English)

    朱智

    2013-01-01

    对循环经济理论进行了简要阐述,以河源连平县大湖镇九里鱼生态旅游度假区发展生态农业旅游的实践,提出了“生态农业链、生态能源链、生态景观链三结合”的生态农业旅游发展新模式。%This paper raised the Circular Economy Theory briefly ,and proposed a new model of eco-agricultural tourism of three com-binations in eco-agriculture chain ,eco-energy chain and eco-landscape chain based on the developmental practice of eco-agricultural tourism of the Jiuliyu eco-tourism resort of Heyuan .

  20. Analysis of a database in order to validate a computer code; Analyse d'une base de donnees pour la calibration d'un code de calcul

    Energy Technology Data Exchange (ETDEWEB)

    Feuillard, V

    2007-05-15

    This thesis takes place in the general context of calibration for industrial application. Calibration consists in assessing the values of the parameters of a model in order to simulate reality at best. This work aims at evaluating the quality of a data base by checking that the data, with respect to our objectives, 'best fill' the space. This work provides a synthesis of algorithmic and mathematic tools to achieve such a purpose. Extraction and importation techniques to improve the global quality of the data are proposed. These methods allow identifying some defaults of the data structure. An illustration of its application is exposed in the context of functional estimation with orthogonal functions. (author)

  1. Economische analyse van de Nederlandse biotechnologiesector

    OpenAIRE

    Giessen, A.M. van der; Gijsbers, G.W.; Koops, R.; Zee, F.A. van der

    2014-01-01

    In opdracht van de Commissie Genetische Modificatie (COGEM) heeft TNO een deskstudie uitgevoerd getiteld “Economische analyse van de Nederlandse biotechnologiesector”. Deze analyse is één van de voorstudies die de COGEM laat uitvoeren als voorbereiding op de Trendanalyse Biotechnologie, die naar verwachting in 2015 zal worden uitgevoerd. Voor deze analyse heeft de COGEM aan TNO gevraagd ontwikkelingen, trends en kansen van de biotechnologie opnieuw in kaart te brengen, met een nadruk op econo...

  2. [Anne Arold. Kontrastive Analyse...] / Paul Alvre

    Index Scriptorium Estoniae

    Alvre, Paul, 1921-2008

    2001-01-01

    Arvustus: Arold, Anne. Kontrastive analyse der Wortbildungsmuster im Deutschen und im Estnischen (am Beispiel der Aussehensadjektive). Tartu, 2000. (Dissertationes philologiae germanicae Universitatis Tartuensis)

  3. Flood frequency analyses with annual and partial flood series

    Science.gov (United States)

    Bezak, N.; Brilly, M.; Sraj, M.

    2012-04-01

    The objective of the study was (1) to analyse the influence of time scale of the data on the results, (2) to analyse the relations between discharge, volume and time of flood waves of the Sava river at Litija (Slovenia), (3) to perform flood frequency analyses of peak discharges with annual and partial data series and compare the results and (4) to explore the influence of threshold value by POT method. Calculations and analyses were made for the period 1953-2010. Daily scale data sets (considering also local maximum) were used. The flood frequency analyses were based on anual and partial data series. The differences between daily and hourly time scale data sets were explored. Daily and hourly time scale hydrographs were compared and differences were analysed. Differences were adequately small. Daily time series with included maximums were logical choice because of the length of the daily time series and because hourly time series were not continuous due to gauging equipment failures. Important objective of the study was to analyse the relationship between discharge, volume and duration of flood waves. Baseflow was separated from continuous daily discharge measurements on simple and complex hydrographs. Simple graphical method with three points was used. Many different coefficients like base flow index were calculated and different combinations of correlation coefficient of wave components were examined. Annual maximum series were used to study the relationship between wave components. Flood frequency analyses were made with annual maximum series and partial duration series. Log-normal distribution, Pearson distribution type 3, log-Pearson distribution type 3, Gumbel distribution, exponential distribution, GEV distribution and GL distribution were used for annual maximum series. Simple equation of linear transformation was used to determine the design discharge and procedure which is proposed in Flood Estimation Handbook was used with GEV and GL distribution

  4. “国家悖论”的适用性分析--基于古代中国的检验%An Adapability Analyse on the Paradox of State---Based on the Ancient China Case

    Institute of Scientific and Technical Information of China (English)

    刘培伟

    2014-01-01

    “国家悖论”是新制度主义的核心理论之一,然而学界对该悖论的适用性研究尚不多见。若以古代中国为案例,可对现有文献关于民主国家不存在严格意义悖论的命题提出质疑,并得出一个新的命题:当专制国家的自利性对社会利益的抑制极强,甚至以其暴力营造出掠夺文化并形成了路径依赖时,国家悖论有消失的可能。%The paradox of state is one of the core theory of the new institutionalism,however the research on the applicabil-ity of it is not much.Based on the ancient China case,this paper firstly questions the existing proposition which argue that there is no strict sense of paradox in the democracy state,then puts forward a new proposition:the paradox has the possibility of vanishing when the inhibition of self-interest authoritarian state on the social interest is very strong,even with its violence to create the predatory culture and form the path dependence.

  5. Analyses of trawling track and fishing activity based on the data of vessel monitoring system (VMS): A case study of the single otter trawl vessels in the Zhoushan fishing ground

    Science.gov (United States)

    Wang, Yang; Wang, Yingbin; Zheng, Ji

    2015-02-01

    The original purpose of Vessel Monitoring System (VMS) is for enforcement and control of vessel sailing. With the application of VMS in fishing vessels, more and more population dynamic studies have used VMS data to improve the accuracy of fisheries stock assessment. In this paper, we simulated the trawl trajectory under different time intervals using the cubic Hermite spline (cHs) interpolation method based on the VMS data of 8 single otter trawl vessels (totally 36000 data items) fishing in Zhoushan fishing ground from September 2012 to December 2012, and selected the appropriate time interval. We then determined vessels' activities (fishing or non-fishing) by comparing VMS speed data with the corresponding speeds from logbooks. The results showed that the error of simulated trajectory greatly increased with the increase of time intervals of VMS data when they were longer than 30 minutes. Comparing the speeds from VMS with those from the corresponding logbooks, we found that the vessels' speeds were between 2.5 kn and 5.0 kn in fishing. The cHs interpolation method is a new choice for improving the accuracy of estimation of sailing trajectory, and the VMS can be used to determine the vessels' activities with the analysis of their trajectories and speeds. Therefore, when the fishery information is limited, VMS can be one of the important data sources for fisheries stock assessment, and more attention should be paid to its construction and application to fisheries stock assessment and management.

  6. Analysis of sea-surface radar signatures by means of wavelet-based edge detection and detection of regularities; Analyse von Radarsignaturen der Meeresoberflaeche mittels auf Wavelets basierender Kantenerkennung und Regularitaetsbestimmung

    Energy Technology Data Exchange (ETDEWEB)

    Wolff, U. [GKSS-Forschungszentrum Geesthacht GmbH (Germany). Inst. fuer Gewaesserphysik

    2000-07-01

    The derivation and implementation of an algorithm for edge detection in images and for the detection of the Lipschitz regularity in edge points are described. The method is based on the use of the wavelet transform for edge detection at different resolutions. The Lipschitz regularity is a measure that characterizes the edges. The description of the derivation is first performed in one dimension. The approach of Mallat is formulated consistently and proved. Subsequently, the two-dimensional case is addressed, for which the derivation, as well as the description of the algorithm, is analogous. The algorithm is applied to detect edges in nautical radar images using images collected at the island of Sylt. The edges discernible in the images and the Lipschitz values provide information about the position and nature of spatial variations in the depth of the seafloor. By comparing images from different periods of measurement, temporal changes in the bottom structures can be localized at different resolutions and interpreted. The method is suited to the monitoring of coastal areas. It is an inexpensive way to observe long-term changes in the seafloor character. Thus, the results of this technique may be used by the authorities responsible for coastal protection to decide whether measures should be taken or not. (orig.)

  7. 基于需求分析理论的翻译硕士专业教学模式研究%On the Educating Mode of MTI Based on Requirement Analyses

    Institute of Scientific and Technical Information of China (English)

    康晓芸; 田旭

    2012-01-01

    The object of MTI is to cultivate advanced practice-oriented translation talents. Based on the theory of needs analysis, the paper researches on the needs of both the translation agencies and the students. The author proposes efficient MTI teaching mode to the benefit of curriculum design:increase practice-oriented courses, innovate teaching method and deepen the cooperation between the university and the translation agencies.%翻译硕士专业(MTI)旨在培养高层次实用型翻译人才,本研究以需求分析理论为指导,研究了当前翻译市场的需求状况和学生的学习需求,旨在使MTI教学设置更为规范、科学和合理,并提出了构建高效的MTI教学模式的途径:加大实践性课程的输入;创新教学方法;深化校企合作。

  8. 基于分子网络的癌症基因与非癌症基因的差异性分析%Network-based differential analyses of cancer-related and unrelated genes

    Institute of Scientific and Technical Information of China (English)

    聂亚玲; 余景开

    2012-01-01

    研究人类蛋白质相互作用网络中,癌症基因和非癌症基因在拓扑结构上的差异性,进而为潜在的癌症基因挖掘提供重要依据。首先利用多个数据库,构建一个较为全面的人类蛋白质相互作用(protein—protein interaction,PPI)网络,并搜集已知癌症基因;然后从PPI网络中抽取大量随机样本,并分别统计分析随机样本和已知癌症基因在节点度、节点介数和最大连接组件上的差异程度。得到了如下结果:(1)构建了一个较为全面的人类蛋白质相互作用网络;(2)获得乳腺癌已知癌症基因集;(3)已知癌症基因集和PPI网络随机样本在节点度、节点介数以及最大连接组件等拓扑结构属性上差异有显著性(P〈2.2×10^(-16))。PPI网络的节点度、节点介数和最大连接组件等拓扑结构属性能够显著地区分癌症基因与非癌症相关基因,为新的未知癌症基因的发掘提供了重要考察依据。%Analyzing differences between cancer-related and unrelated genes based on their topological attributes in the protein-protein interaction (PPI) network. We constructed a comprehensive human PPI network with data collected from multiple PPI databases; obtained a set of known breast cancer genes from the OMIM database; and compared cancer-related and unrelated genes based on their topological attributes in the PPI network. The results obtained as follows : ( 1 ) We constructed a comprehensive human PPI network and obtained a known breast cancer gene set ; (2) We showed that known cancer genes exhibit significantly different network topologies from random genes in the network. A comprehensive PPI network can help us to differentiate cancer genes from unrelated ones by their distinctive topological attributes, such as node degrees, node betweenness and maximally connected components.

  9. 基于微观经济学视角下的中国鲜切花产业统计数据分析%Analyse on Statistics Data of Cut Flowers Industry in China Based on Microeconomics Perspective

    Institute of Scientific and Technical Information of China (English)

    陈小琴; 潘东明

    2012-01-01

    运用微观经济学理论,从需求、供给、生产者行为、消费者行为以及市场结构5个角度,结合近10年来中国鲜切花产业数据,对中国鲜切花产业的主要经济学特性及其在“十一五”以来的发展变化作了分析和描述;最后提出针对性的建议:加强资源集聚,大力推进花卉产业化进程;加深花卉市场研究,积极引导并开拓国内外花卉消费市场;重视要素市场投入,全面提升鲜切花产业核心竞争力;重点提升花卉品质,逐步提高花卉出口能力.%This article analyzed the economics characteristics of cut flowers industry and described the development and change during the "eleventh five-year plan", based on micro-economical theory, with five angles including the demand, supply, producer behavior, consumer behavior and market structure, combined with the data about cut flowers industry of our country in the past ten years. Finally the paper put forward some suggestions that China must Enhance resources concentration, and vigorously promote industrialization of the flower; Deepen to research the market of the flower, and actively guide and develop the flower consumption markets both at home and abroad; Pay attention to invest in factor markets, to raise the core competitiveness of the cut flower industry; Key to improve the flower quality, and gradually increase the export capacity of the flowers in China.

  10. Analyses of Trawling Track and Fishing Activity Based on the Data of Vessel Monitoring System (VMS):A Case Study of the Single Otter Trawl Vessels in the Zhoushan Fishing Ground

    Institute of Scientific and Technical Information of China (English)

    WANG Yang; WANG Yingbin; ZHENG Ji

    2015-01-01

    The original purpose of Vessel Monitoring System (VMS) is for enforcement and control of vessel sailing. With the ap-plication of VMS in fishing vessels, more and more population dynamic studies have used VMS data to improve the accuracy of fisheries stock assessment. In this paper, we simulated the trawl trajectory under different time intervals using the cubic Hermite spline (cHs) interpolation method based on the VMS data of 8 single otter trawl vessels (totally 36000 data items) fishing in Zhou-shan fishing ground from September 2012 to December 2012, and selected the appropriate time interval. We then determined vessels’ activities (fishing or non-fishing) by comparing VMS speed data with the corresponding speeds from logbooks. The results showed that the error of simulated trajectory greatly increased with the increase of time intervals of VMS data when they were longer than 30 minutes. Comparing the speeds from VMS with those from the corresponding logbooks, we found that the vessels’ speeds were be-tween 2.5kn and 5.0kn in fishing. The cHs interpolation method is a new choice for improving the accuracy of estimation of sailing trajectory, and the VMS can be used to determine the vessels’ activities with the analysis of their trajectories and speeds. Therefore, when the fishery information is limited, VMS can be one of the important data sources for fisheries stock assessment, and more at-tention should be paid to its construction and application to fisheries stock assessment and management.

  11. The design and analyse of the special engineering plastic metal sheath based on the bearing seat hole%特种工程塑料轴承座孔金属套的设计与分析

    Institute of Scientific and Technical Information of China (English)

    朱朝宽; 周强

    2011-01-01

    Aim at the big contract rate and the bad machine cutting process performance of the special engineering plastic,to attain high precision bearing seat hole adopt the means that inlay the metal sheath in plastic mould, and put up machine cutting process, the size precision,location precision, the surface roughness limit and so on, those precision index can meet fit beating and working,then set up the structure correlation count formula based on the bearing seat hole and the part work environment,for extending that the special engineering plastic apply to the more complex machine structure, supply the technique sustain%针对特种工程塑料在零件成型过程中收缩率大、机械加工性能不高的特点,采用在注塑模具中镶嵌由钢或者铸铁制成的金属套的办法,来获得轴承座孔的安装结构,然后经过机械加工获得高精度的轴承座孔,使其尺寸精度、位置精度、表面粗糙度等指标能够满足轴承安装和工作的需要,并根据机械加工过程和零件的工作环境推导出金属套设计计算的相关公式,为推广工程塑料在更复杂机械结构中的应用提供技术支持.

  12. 基于QFD方法的高寒山地弹药供应保障设施需求分析%Demand Analyses of Ammunition Supply Support Facilities in Cold Mountain Areas Based on QFD

    Institute of Scientific and Technical Information of China (English)

    齐浩淳; 黄大鹏; 于海龙; 师菁菁

    2016-01-01

    In the ammunition supply support,information technology should be mainly relied on,and looking for strategies that can effectively solve various problems in the process of ammunition supply support,and establishing its reasonable command system can lay the foundation for efficiently improving the army’s ammunition supply’s support capability.Based on QFD (Quality Function Deployment),the paper analyzed the facility demands of ammunition supply support.Compared with the traditional demand analysis method focused on the accumulated experience and subjective reasoning,QFD can better meet the demands of ammunition supply support facilities in the cold mountain areas.%在弹药供应保障中要重点依托信息化技术,寻找能够有效解决弹药供应保障过程中出现各种问题的策略,建立合理的弹药供应保障指挥体系,为切实提高我军的弹药供应保障能力奠定基础。基于品质功能配置法(Quality Function Deployment,QFD)对弹药供应保障的设施需求进行了分析,较之传统的侧重于经验累积和主观推理的需求分析方法,可以更好地满足高寒山地条件下的弹药供应保障设施需求。

  13. 基于贝叶斯网络的生物质气化中毒事故定量bow-tie分析%Quantitative Bow-Tie Analyses for Biomass Gasification Poisoning Accidents Based on Bayesian Network

    Institute of Scientific and Technical Information of China (English)

    闫放; 许开立; 姚锡文; 王文菁

    2015-01-01

    Fussell-Vesely worth of each event is calculated by Bayesian network .Prevention measures are adopted to the reason event with higher worth .The event tree analysis is conducted to determine control measures and calculate the probability of biomass gasification poisoning accidents before and after measures are taken .Finally the biomass gasification poisoning acci-dents after using bow-tie analysis based on Bayesian network are evaluated by risk assessment matrix .As the result ,this method can reduce probability and risk of accidents by adopting safety measures to parts of the whole points of the system .%本文通过贝叶斯网络计算各原因事件的弗塞-维思利重要度,选取重要度较高的原因事件采取预防措施;并通过事件树分析确定控制措施,计算采取措施前后生物质气化中毒事故发生的概率,最后通过危险性评价矩阵对采取基于贝叶斯网络的bow-tie分析后的生物质气化中毒事故风险进行评价。结果表明,采用该方法只需对系统中部分节点采取安全措施即可有效降低事故发生概率,从而降低事故风险。

  14. Analyses of Sports Industries in Jiangsu Universities Based on SWOT Model and Their Countermeasures%基于SWOT模型的江苏省高校体育产业现状分析与对策

    Institute of Scientific and Technical Information of China (English)

    朱建国

    2011-01-01

    Based on the SWOT model, this paper makes an analysis of the present situation of university sports industries in Jiangsu. The paper points out that the development of sports industries in Jiangsu universi- ties enjoys such opportunities as the transformation of Chinese economic development mode,favorable politi- cal environment, the consumption guidance of health ideology, but it also faces the challenges, such as hyster- eric systems, the challenges from some dominant cultures, and the competitions with social sports industries. To realize sound and fast development of university sports industries ,it's a must for university sports industries to be scientifically orientated, to cooperate with competitors, to pioneer and innovate, to establish fames of some sports brands ,and to optimize the development environment.%运用SWOT模型客观地分析了江苏省高校体育产业发展的现状,当前江苏省高校体育产业发展面临着我国经济发展方式转型、有利的政策环境和健康文化消费的引领等发展机遇,以及体制滞后的困扰、优势文化源的挑战和社会体育事业产业发展竞争的挑战。因此,江苏省高校体育产业必须科学定位,在竞争中合作、开拓创新、打造品牌和优化发展环境,才能快速健康地发展。

  15. Hexahalogenated and their mixed benzene derivatives as prototypes for the understanding of halogen···halogen intramolecular interactions: New insights from combined DFT, QTAIM-, and RDG-based NCI analyses.

    Science.gov (United States)

    Varadwaj, Pradeep R; Varadwaj, Arpita; Jin, Bih-Yaw

    2015-12-01

    A large number of fully halogenated benzene derivatives containing the fluorine, chlorine, bromine, and iodine atoms have been experimentally synthesized both as single- and co-crystals (e.g., Desiraju et al., Chem. Eur. J. 2006, 12, 2222), yet the natures of the halogen ··· halogen interactions between the vicinal halogens in these compounds within the intramolecular domain are undisclosed. Given a fundamental understanding of these interactions is incredibly important in many areas of chemical, biological, supramolecular, and material sciences, we present here our newly discovered theoretical results that delineate whilst the nature of an F···F interaction in a pair of two adjacent fluorine atoms in either of the hexafluorobenzene and 1,4-dibromotetrafluorobenzene compounds examined is almost unclear, each of the latter three hexahalogenated benzene derivatives (viz., C6 Cl6 , C6 Br6 , and C6 I6 ), and each of the seven of their fully mixed hexahalogenated benzene analogues, are found to be stabilized by means of a number of halogen···halogen interactions, each a form of long-range attraction within the intramolecular domain. The Molecular Electrostatic Surface Potential model was found to be unsurprisingly unsuitable in unraveling any of the aforesaid attractions between the halogen atoms. However, such interactions successfully enunciated by a set of noncovalent interaction descriptors of geometrical, topological, and electrostatic origins. These latter properties were extracted combining the results of the Density Functional Theory electronic structure calculations with those revealed from Atoms in Molecules, and Reduced Density Gradient charge density-based topological calculations, and are expounded in detail to formalize the conclusions. © 2015 Wiley Periodicals, Inc. PMID:26505258

  16. Consumption patterns and perception analyses of hangwa.

    Science.gov (United States)

    Kwock, Chang Geun; Lee, Min A; Park, So Hyun

    2012-03-01

    Hangwa is a traditional food, corresponding to the current consumption trend, in need of marketing strategies to extend its consumption. Therefore, the purpose of this study was to analyze consumers' consumption patterns and perception of Hangwa to increase consumption in the market. A questionnaire was sent to 250 consumers by e-mail from Oct 8∼23, 2009 and the data from 231 persons were analyzed in this study. Statistical, descriptive, paired samples t-test, and importance-performance analyses were conducted using SPSS WIN 17.0. According to the results, Hangwa was purchased mainly 'for present' (39.8%) and the main reasons for buying it were 'traditional image' (33.3%) and 'taste' (22.5%). When importance and performance of attributes considered in purchasing Hangwa were evaluated, performance was assessed to be lower than importance for all attributes. The attributes in the first quadrant with a high importance and a high performance were 'a sanitary process', 'a rigorous quality mark' and 'taste', which were related with quality of the products. In addition, those with a high importance but a low performance were 'popularization through advertisement', 'promotion through mass media', 'conversion of thought on traditional foods', 'a reasonable price' and 'a wide range of price'. In conclusion, Hangwa manufacturers need to diversify products and extend the expiration date based on technologies to promote its consumption. In terms of price, Hangwa should become more available by lowering the price barrier for consumers who are sensitive to price. PMID:24471065

  17. On study design in neuroimaging heritability analyses

    Science.gov (United States)

    Koran, Mary Ellen; Li, Bo; Jahanshad, Neda; Thornton-Wells, Tricia A.; Glahn, David C.; Thompson, Paul M.; Blangero, John; Nichols, Thomas E.; Kochunov, Peter; Landman, Bennett A.

    2014-03-01

    Imaging genetics is an emerging methodology that combines genetic information with imaging-derived metrics to understand how genetic factors impact observable structural, functional, and quantitative phenotypes. Many of the most well-known genetic studies are based on Genome-Wide Association Studies (GWAS), which use large populations of related or unrelated individuals to associate traits and disorders with individual genetic factors. Merging imaging and genetics may potentially lead to improved power of association in GWAS because imaging traits may be more sensitive phenotypes, being closer to underlying genetic mechanisms, and their quantitative nature inherently increases power. We are developing SOLAR-ECLIPSE (SE) imaging genetics software which is capable of performing genetic analyses with both large-scale quantitative trait data and family structures of variable complexity. This program can estimate the contribution of genetic commonality among related subjects to a given phenotype, and essentially answer the question of whether or not the phenotype is heritable. This central factor of interest, heritability, offers bounds on the direct genetic influence over observed phenotypes. In order for a trait to be a good phenotype for GWAS, it must be heritable: at least some proportion of its variance must be due to genetic influences. A variety of family structures are commonly used for estimating heritability, yet the variability and biases for each as a function of the sample size are unknown. Herein, we investigate the ability of SOLAR to accurately estimate heritability models based on imaging data simulated using Monte Carlo methods implemented in R. We characterize the bias and the variability of heritability estimates from SOLAR as a function of sample size and pedigree structure (including twins, nuclear families, and nuclear families with grandparents).

  18. 双重委托代理下独立董事治理效应研究%The Analyses of Independent Directors' Governance Effects Based on the View of Double Principal-agent

    Institute of Scientific and Technical Information of China (English)

    杜育华

    2011-01-01

    为深入理解独立董事在双重委托代理关系下的治理功用,并为构建具有中国特色的公司治理结构提供理论借鉴,运用双重委托代理理论对独立董事治理效应进行分析,结果表明:一方面为监督CEO而提高董事会中独立董事比例,CEO会越不愿意与董事会共享公司内部信息,使得独立董事难以直接降低第1类代理成本;另一方面,为监督大股东侵占而必须进行的独立董事"独立化"有可能在抑制第2类代理问题的同时,削弱大股东治理机制的有效性,诱发严重的股东与经理层之间的利益冲突,间接增加第1类代理成本.%The paper studies the governance effect of independent directors based on the theory of double principal-agent. It shows that increasing the proportion of independent directors to board of direcrors in order to monitor the CEO make CEO share insider information with board of directors reluctantly, thus independent directors is hard to reduce agency cost between shareholders and managers directly. On the other hand, although the independence of independent directors must be reinforced in order to curb large shareholder and provide better protection to small shareholders, it impairs governance effectiveness of large shareholder. As a result, sharp benefit conflicts between shareholders and managers arise, and ultimately decrease the whole shareholders profits indirectly. Overall, in addition to facilitating understanding independent directors' governance effect deeply when double principal-agent problem occurs, our results provide the theoretical basis for constructing the corporate governance structure with Chinese characteristics.

  19. Study on Genetic Structure of Dahe Black Pig Based on DNA Sequence Analyses of Cytochrome b Gene%基于细胞色素b基因的大河乌猪群体遗传结构研究

    Institute of Scientific and Technical Information of China (English)

    唐利洲; 施晓东; 丁伟; 于龙; 王俊杰; 朱磊; 郭松长

    2013-01-01

    为了弄清大河乌猪群体遗传分化水平和遗传结构,以曲靖市5个地理种群的46个大河乌猪样品为试验材料,采用分子生物学方法测定和分析所有个体的线粒体细胞色素b(Cyt b)基因DNA序列.分子变异分析结果表明,大河乌猪群体遗传变异主要来自种群内(62.63%),说明该物种群体遗传结构不明显.中性检验结果进一步证实,大河乌猪群体曾发生过种群数量扩张.这种不显著的种群结构主要来自于大规模的引种和扩大繁育,致使各地理种群间的遗传趋同和遗传一致性.研究结果有望为大河乌猪分子遗传选育工作提供重要的基础数据,并为其遗传种质资源的保护提供重要参考.%For revealing the level of genetic divergence and genetic structure of Dahe Black pig, this research was implemented using molecular biological methods that sequenced and analyzed the Cyt b DNA sequences based on 46 samples from 5 geographic populations of Qujing city. The AMOVA results showed that most of genetic variation (62. 63%) distributed within populations. This could indicate fully that the whole population genetic structure of this species was not evident because of significant gene flow among different populations. The results of neutrality tests further validated that the instable population structure of this whole group could be affected by the population expansion from the artificial selective breeding and introduction breeding. This instable population structure or lower genetic differentiation could be induced by the large-scale introduction and expanding breeding. The significant gene flow induced the genetic convergence in various geographical populations eventually, population expanding and population genetic diversity declined significantly. This study was expected to provide important scientific basis and data for the molecular genetic breeding of Dahe Black pig and for the manager's effective measures to protect the genetic

  20. A Text Feature Selection Algorithm Based on Analysing the Relationship Between Words%基于词间关系分析的文本特征选择算法

    Institute of Scientific and Technical Information of China (English)

    吴双; 张文生; 徐海瑞

    2012-01-01

    传统的特征选择方法通常使用特征评价函数从原始词集中筛选出最具有类别区分能力的特征.这些方法是基于以独立的词作为语义单元的向量空间模型,忽略了词与词之间的关联关系,难以突出文本内容中的关键特征.针对传统特征选择方法的不足,本文提出一种新的基于词间关系的文本特征选择算法.该方法考虑对文本内容表示起到关键性作用的词,利用关联规则挖掘算法发现词语之间的关联关系,并且通过相关分析对强关联规则进行筛选,最终生成与类别属性密切相关的特征空间.实验结果表明,该方法更好地表示了文本的语义内容,而且分类效果优于传统算法.%The traditional feature selection algorithms usually select features distinguishing the different types of documents by the evaluation functions. However, these methods take the separate word as unit to establish a vector space model. The important words in the documents and the relationship between words are not realized. In allusion to the disadvantages mentioned above, a new feature selection algorithm based on the relationship between words is presented. This algorithm considers key words, mines words' association and checks these association rules by a correlation analysis to produce a feature space which closely relates to the category attributes. The experiment indicates that this method is better to express the semantic content of the documents and has a good categorization result.

  1. Net Energy, CO2 Emission and Land-Based Cost-Benefit Analyses of Jatropha Biodiesel: A Case Study of the Panzhihua Region of Sichuan Province in China

    Directory of Open Access Journals (Sweden)

    Xiangzheng Deng

    2012-06-01

    Full Text Available Bioenergy is currently regarded as a renewable energy source with a high growth potential. Forest-based biodiesel, with the significant advantage of not competing with grain production on cultivated land, has been considered as a promising substitute for diesel fuel by many countries, including China. Consequently, extracting biodiesel from Jatropha curcas has become a growing industry. However, many key issues related to the development of this industry are still not fully resolved and the prospects for this industry are complicated. The aim of this paper is to evaluate the net energy, CO2 emission, and cost efficiency of Jatropha biodiesel as a substitute fuel in China to help resolve some of the key issues by studying data from this region of China that is well suited to growing Jatropha. Our results show that: (1 Jatropha biodiesel is preferable for global warming mitigation over diesel fuel in terms of the carbon sink during Jatropha tree growth. (2 The net energy yield of Jatropha biodiesel is much lower than that of fossil fuel, induced by the high energy consumption during Jatropha plantation establishment and the conversion from seed oil to diesel fuel step. Therefore, the energy efficiencies of the production of Jatropha and its conversion to biodiesel need to be improved. (3 Due to current low profit and high risk in the study area, farmers have little incentive to continue or increase Jatropha production. (4 It is necessary to provide more subsidies and preferential policies for Jatropha plantations if this industry is to grow. It is also necessary for local government to set realistic objectives and make rational plans to choose proper sites for Jatropha biodiesel development and the work reported here should assist that effort. Future research focused on breading high-yield varieties, development of efficient field

  2. Economische analyse van de Nederlandse biotechnologiesector

    NARCIS (Netherlands)

    Giessen, A.M. van der; Gijsbers, G.W.; Koops, R.; Zee, F.A. van der

    2014-01-01

    In opdracht van de Commissie Genetische Modificatie (COGEM) heeft TNO een deskstudie uitgevoerd getiteld “Economische analyse van de Nederlandse biotechnologiesector”. Deze analyse is één van de voorstudies die de COGEM laat uitvoeren als voorbereiding op de Trendanalyse Biotechnologie, die naar ver

  3. New environmental metabarcodes for analysing soil DNA

    DEFF Research Database (Denmark)

    Epp, Laura S.; Boessenkool, Sanne; Bellemain, Eva P.;

    2012-01-01

    Metabarcoding approaches use total and typically degraded DNA from environmental samples to analyse biotic assemblages and can potentially be carried out for any kinds of organisms in an ecosystem. These analyses rely on specific markers, here called metabarcodes, which should be optimized for ta....... The metabarcoding approach has considerable potential for biodiversity screening of modern samples and also as a palaeoecological tool....

  4. Novel Algorithms for Astronomical Plate Analyses

    Indian Academy of Sciences (India)

    Rene Hudec; Lukas Hudec

    2011-03-01

    Powerful computers and dedicated software allow effective data mining and scientific analyses in astronomical plate archives. We give and discuss examples of newly developed algorithms for astronomical plate analyses, e.g., searches for optical transients, as well as for major spectral and brightness changes.

  5. Human identification & forensic analyses of degraded or low level DNA

    NARCIS (Netherlands)

    Westen, Antoinette-Andrea

    2013-01-01

    DNA-based human identification is employed in varying situations, such as disaster victim identification, relationship testing and forensic analyses. When DNA is of low quality and/or quantity, standard methods for DNA profiling may not suffice. The research described in this thesis is aimed at the

  6. High perfomance liquid chromatography in pharmaceutical analyses.

    Science.gov (United States)

    Nikolin, Branko; Imamović, Belma; Medanhodzić-Vuk, Saira; Sober, Miroslav

    2004-05-01

    In testing the pre-sale procedure the marketing of drugs and their control in the last ten years, high performance liquid chromatography replaced numerous spectroscopic methods and gas chromatography in the quantitative and qualitative analysis. In the first period of HPLC application it was thought that it would become a complementary method of gas chromatography, however, today it has nearly completely replaced gas chromatography in pharmaceutical analysis. The application of the liquid mobile phase with the possibility of transformation of mobilized polarity during chromatography and all other modifications of mobile phase depending upon the characteristics of substance which are being tested, is a great advantage in the process of separation in comparison to other methods. The greater choice of stationary phase is the next factor which enables realization of good separation. The separation line is connected to specific and sensitive detector systems, spectrafluorimeter, diode detector, electrochemical detector as other hyphernated systems HPLC-MS and HPLC-NMR, are the basic elements on which is based such wide and effective application of the HPLC method. The purpose high performance liquid chromatography (HPLC) analysis of any drugs is to confirm the identity of a drug and provide quantitative results and also to monitor the progress of the therapy of a disease.1) Measuring presented on the Fig. 1. is chromatogram obtained for the plasma of depressed patients 12 h before oral administration of dexamethasone. It may also be used to further our understanding of the normal and disease process in the human body trough biomedical and therapeutically research during investigation before of the drugs registration. The analyses of drugs and metabolites in biological fluids, particularly plasma, serum or urine is one of the most demanding but one of the most common uses of high performance of liquid chromatography. Blood, plasma or serum contains numerous endogenous

  7. GIS-based analyses of landscape pattern and landscape fragmentation of Huanglong County%黄龙县土地利用景观格局及其破碎化分析

    Institute of Scientific and Technical Information of China (English)

    邱海军; 曹明明

    2011-01-01

    目的 揭示黄龙县土地利用景观格局,评价景观破碎化程度,为进一步决策提供科学依据.方法 以黄龙县土地利用现状图为基本图件,利用地理信息系统(GIS)技术,结合景观格局分析软件Fragstats(栅格版),选取多种景观格局指标进行现状及其破碎化评价.结果 ①黄龙县土地利用的景观基质是林地景观,林地所占面积和周长最大,斑块规模都较大,基本连接成片,保持得较为完整;其次为草地、旱地;3者构成景观主要类型;②园地和城乡居民用地散布于整个景观中,其破碎化程度较高,人类活动对其影响程度较大;③草地的分形维数最大,其边界褶皱程度较高,但从整个景观来看,边界褶皱程度较小;④林地的结合度最高,连接性好,景观破碎化程度低.城乡居民用地和园地的结合度较低,连接性较差,景观破碎化程度高,但整体上看,景观连接性好,景观破碎化程度低.结论 黄龙县景观局部破损,但整体较好.%Aim Revealing the landscape pattern and landscape fragmentation of Huanglong County, it can give some references and suggestions for making a strategic decision on land utilization in the future. Methods Based on the land-use map data of Huanglong County, the geographic information system and software of landscape pattern (Fragstats3. 3) and a number of landscape pattern indices are used to analyze the spatial pattern of Huanglong County and the degree of fragmentation. Results The conclusions are as follows ;1 ) Matrix in the land-use landscape of Huanglong County is woodland landscape. Its patches are large-scale and most of them are conjunctive. Woodland is the most important landscape type with the largest area and perimeter in this region and has the highest integrity, followed by grassland and dryland. The three types consists of the main landscape types. 2) The urban and rural purpose land and orchard land show greater fragmentation and are

  8. Analyses of vibro-acoustic characteristics for orthogonally stiffened panel based on the plate-beam combined theory%基于板梁组合理论的正交加筋板声振特性分析

    Institute of Scientific and Technical Information of China (English)

    金叶青; 庞福振; 姚熊亮; 王献忠

    2012-01-01

    基于板梁组合理论,建立了正交加筋板声透射计算模型,并分析了正交加筋板的声振特性.将加强筋视为平板的动反力及动反力矩,引入到平板振动方程,得到了正交加筋板声振方程;利用空间谐波展开法及虚功原理,得到了正交加筋板透射损失和平均振动速度级表达式.在此基础上,首先研究了单向加筋板的隔声性能,理论结果与已有计算结果取得了很好的一致,验证了模型的有效性;并进一步研究了正交加筋的声振特性.研究表明,正交加筋板对垂直入射声波的隔声效果最好;增大加强筋惯性矩可提高其低频段透射损失;增大加强筋间距可提高正交加筋板的低频段振动响应,却降低了其低频透射损失,总体而言,增大加强筋间距可改善结构的整体隔声性能.%Based on the panel-beam combined theory, a panel-beam theoretical model is established for sound transmission through orthogonally stiffened panel and vibro-acoustic characteristics of the panel are analyzed. The vibro-acoustic equation of the structures was derived by firstly treating the stiffeners as reaction forces and moments on the panel and then inducing them into the vibration equation of the panel. The formulations of Transmission Loss (TL) and mean vibration velocity level for the structures were yielded according to the spatial harmonic expansion method and the virtual work principle. And then the developed model was applied to analyze sound insulation of the stiffened panel in one direction. The validity of the developed model was qualified by comparing those predictions with existing results. The model then employed to investigate the vi-bro-acoustic characteristics of the orthogonally stiffened panel. Results show that the orthogonally stiffened panel is more suitable for the insulation of sound waves with small incidence angle. An enlargement in the moment of inertia of stiffeners increases sound transmission loss in

  9. Fracturing and brittleness index analyses of shales

    Science.gov (United States)

    Barnhoorn, Auke; Primarini, Mutia; Houben, Maartje

    2016-04-01

    The formation of a fracture network in rocks has a crucial control on the flow behaviour of fluids. In addition, an existing network of fractures , influences the propagation of new fractures during e.g. hydraulic fracturing or during a seismic event. Understanding of the type and characteristics of the fracture network that will be formed during e.g. hydraulic fracturing is thus crucial to better predict the outcome of a hydraulic fracturing job. For this, knowledge of the rock properties is crucial. The brittleness index is often used as a rock property that can be used to predict the fracturing behaviour of a rock for e.g. hydraulic fracturing of shales. Various terminologies of the brittleness index (BI1, BI2 and BI3) exist based on mineralogy, elastic constants and stress-strain behaviour (Jin et al., 2014, Jarvie et al., 2007 and Holt et al., 2011). A maximum brittleness index of 1 predicts very good and efficient fracturing behaviour while a minimum brittleness index of 0 predicts a much more ductile shale behaviour. Here, we have performed systematic petrophysical, acoustic and geomechanical analyses on a set of shale samples from Whitby (UK) and we have determined the three different brittleness indices on each sample by performing all the analyses on each of the samples. We show that each of the three brittleness indices are very different for the same sample and as such it can be concluded that the brittleness index is not a good predictor of the fracturing behaviour of shales. The brittleness index based on the acoustic data (BI1) all lie around values of 0.5, while the brittleness index based on the stress strain data (BI2) give an average brittleness index around 0.75, whereas the mineralogy brittleness index (BI3) predict values below 0.2. This shows that by using different estimates of the brittleness index different decisions can be made for hydraulic fracturing. If we would rely on the mineralogy (BI3), the Whitby mudstone is not a suitable

  10. Trial sequential analyses of meta-analyses of complications in laparoscopic vs. small-incision cholecystectomy: more randomized patients are needed

    DEFF Research Database (Denmark)

    Keus, Frederik; Wetterslev, Jørn; Gluud, Christian;

    2010-01-01

    Conclusions based on meta-analyses of randomized trials carry a status of "truth." Methodological components may identify trials with systematic errors ("bias"). Trial sequential analysis (TSA) evaluates random errors in meta-analysis. We analyzed meta-analyses on laparoscopic vs. small-incision ......Conclusions based on meta-analyses of randomized trials carry a status of "truth." Methodological components may identify trials with systematic errors ("bias"). Trial sequential analysis (TSA) evaluates random errors in meta-analysis. We analyzed meta-analyses on laparoscopic vs. small......-incision cholecystectomy regarding different outcome measures for the occurrence of type I errors....

  11. The development of an on-line gold analyser

    International Nuclear Information System (INIS)

    An on-line analyser to monitor the gold in solutions from the carbon-in-pulp process is described. The automatic system is based on the delivery of filtered samples of the solutions to a distribution valve for measurement by flameless atomic-absorption spectrophotometry. The samples is introduced by the aerosol-deposition method. Operation of the analyser on a pilot plant and on a full-scale carbon-in-pulp plant has shown that the system is economically feasible and capable of providing a continuous indication of the efficiency of the extraction process

  12. Using Microsoft Office Excel 2007 to conduct generalized matching analyses.

    Science.gov (United States)

    Reed, Derek D

    2009-01-01

    The generalized matching equation is a robust and empirically supported means of analyzing relations between reinforcement and behavior. Unfortunately, no simple task analysis is available to behavior analysts interested in using the matching equation to evaluate data in clinical or applied settings. This technical article presents a task analysis for the use of Microsoft Excel to analyze and plot the generalized matching equation. Using a data-based case example and a step-by-step guide for completing the analysis, these instructions are intended to promote the use of quantitative analyses by researchers with little to no experience in quantitative analyses or the matching law.

  13. VIPRE modeling of VVER-1000 reactor core for DNB analyses

    Energy Technology Data Exchange (ETDEWEB)

    Sung, Y.; Nguyen, Q. [Westinghouse Electric Corporation, Pittsburgh, PA (United States); Cizek, J. [Nuclear Research Institute, Prague, (Czech Republic)

    1995-09-01

    Based on the one-pass modeling approach, the hot channels and the VVER-1000 reactor core can be modeled in 30 channels for DNB analyses using the VIPRE-01/MOD02 (VIPRE) code (VIPRE is owned by Electric Power Research Institute, Palo Alto, California). The VIPRE one-pass model does not compromise any accuracy in the hot channel local fluid conditions. Extensive qualifications include sensitivity studies of radial noding and crossflow parameters and comparisons with the results from THINC and CALOPEA subchannel codes. The qualifications confirm that the VIPRE code with the Westinghouse modeling method provides good computational performance and accuracy for VVER-1000 DNB analyses.

  14. L’Analyse de discours des Sociologues

    OpenAIRE

    Demailly, Lise

    2013-01-01

    Les sociologues utilisent, comme méthode d'analyse, l'analyse de discours. Des recherches, ici exposées, ont été menées sur cette méthode, ses spécificités et ses apports à la formation aux techniques d'expression (T.E.). Il ressort que le sociologue produit d'abord des discours (par l'entretien et l'observation) puis les analyse, les traite. Ces discours sont difficilement utilisables en T.E. tant ils sont saturés d'enjeux théoriques voire idéologiques.

  15. Integrated Field Analyses of Thermal Springs

    Science.gov (United States)

    Shervais, K.; Young, B.; Ponce-Zepeda, M. M.; Rosove, S.

    2011-12-01

    A group of undergraduate researchers through the SURE internship offered by the Southern California Earthquake Center (SCEC) have examined thermal springs in southern Idaho, northern Utah as well as mud volcanoes in the Salton Sea, California. We used an integrated approach to estimate the setting and maximum temperature, including water chemistry, Ipad-based image and data-base management, microbiology, and gas analyses with a modified Giggenbach sampler.All springs were characterized using GISRoam (tmCogent3D). We are performing geothermometry calculations as well as comparisons with temperature gradient data on the results while also analyzing biological samples. Analyses include water temperature, pH, electrical conductivity, and TDS measured in the field. Each sample is sealed and chilled and delivered to a water lab within 12 hours.Temperatures are continuously monitored with the use of Solinst Levelogger Juniors. Through partnership with a local community college geology club, we receive results on a monthly basis and are able to process initial data earlier in order to evaluate data over a longer time span. The springs and mudpots contained microbial organisms which were analyzed using methods of single colony isolation, polymerase chain reaction, and DNA sequencing showing the impact of the organisms on the springs or vice versa. Soon we we will collect gas samples at sites that show signs of gas. This will be taken using a hybrid of the Giggenbach method and our own methods. Drawing gas samples has proven a challenge, however we devised a method to draw out gas samples utilizing the Giggenbach flask, transferring samples to glass blood sample tubes, replacing NaOH in the Giggenbach flask, and evacuating it in the field for multiple samples using a vacuum pump. We also use a floating platform devised to carry and lower a levelogger, to using an in-line fuel filter from a tractor in order to keep mud from contaminating the equipment.The use of raster

  16. Understanding Human Error Based on Automated Analyses vol 1

    Data.gov (United States)

    National Aeronautics and Space Administration — A proactive approach to identifying and alleviating life-threatening conditions in the aviation system entails a well-defined process of identifying threats,...

  17. BICM-ID-Based IDMA: Convergence and Rate Region Analyses

    OpenAIRE

    Wu, Kun; Anwar, Khoirul; Matsumoto, Tad

    2014-01-01

    This paper considers uplink interleave division multiple access (IDMA), of which crucial requirement is the proper operability at a very low signal-to-interference-plus-noise power ratio (SINR) range. The primary objectives of this paper are threefold: (1) to demonstrate the achievability of near-capacity performance of bit interleaved coded modulation with iterative detection (BICM-ID) using very low rate single parity check and irregular repetition (SPC-IrR) codes at a very low SINR range, ...

  18. Natural history of alkaptonuria revisited: analyses based on scoring systems.

    Science.gov (United States)

    Ranganath, Lakshminarayan R; Cox, Trevor F

    2011-12-01

    Increased circulating homogentisic acid in body fluids occurs in alkaptonuria (AKU) due to lack of enzyme homogentisate dioxygenase leading in turn to conversion of HGA to a pigmented melanin-like polymer, known as ochronosis. The tissue damage in AKU is due to ochronosis. A potential treatment, a drug called nitisinone, to decrease formation of HGA is available. However, deploying nitisinone effectively requires its administration at the most optimal time in the natural history. AKU has a long apparent latent period before overt ochronosis develops. The rate of change of ochronosis and its consequences over time following its recognition has not been fully described in any quantitative manner. Two potential tools are described that were used to quantitate disease burden in AKU. One tool describes scoring the clinical features that includes clinical assessments, investigations and questionnaires in 15 patients with AKU. The second tool describes a scoring system that only includes items obtained from questionnaires in 44 people with AKU. Analysis of the data reveals distinct phases of the disease, a pre-ochronotic phase and an ochronotic phase. The ochronotic phase appears to demonstrate an earlier slower progression followed by a rapidly progressive phase. The rate of change of the disease will have implications for monitoring the course of the disease as well as decide on the most appropriate time that treatment should be started for it to be effective either in prevention or arrest of the disease. PMID:21748407

  19. Kernel based eigenvalue-decomposition methods for analysing ham

    DEFF Research Database (Denmark)

    Christiansen, Asger Nyman; Nielsen, Allan Aasbjerg; Møller, Flemming;

    2010-01-01

    conditions and finding useful additives to hinder the color to change rapidly. To be able to prove which methods of storing and additives work, Danisco wants to monitor the development of the color of meat in a slice of ham as a function of time, environment and ingredients. We have chosen to use multi......Every consumer wants fresh ham and the way we decide whether the meat is fresh or not is by looking at the color. The producers of ham wants a long shelf life, meaning they want the ham to look fresh for a long time. The Danish company Danisco is therefore trying to develop optimal storing...... spectral images to monitor the change in color. We therefore have to be able to segment the ham into the dierent categories of which the ham consists. These categories include fat, gristle and two dierent types of meat. This segmentation is difficult when using the traditional orthogonal transformation...

  20. Multiscale entropy-based analyses of soil transect data

    OpenAIRE

    Tarquis Alfonso, Ana Maria; Bird, N. R. A.; Whitmore, A.P.; Cartagena Causape, Maria Carmen; Pachepsky, Yakov

    2008-01-01

    A deeper understanding of the spatial variability of soil properties and the relationships between them is needed to scale up measured soil properties and to model soil processes. The object of this study was to describe the spatial scaling properties of a set of soil physical properties measured on a common 1024-m transect across arable fields at Silsoe in Bedfordshire, east-central England. Properties studied were volumetric water content ({theta}), total porosity ({pi}), pH, and N2O flux. ...