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Sample records for allozymes

  1. Genetic Diversity Based on Allozyme Alleles of Chinese Cultivated Rice

    Institute of Scientific and Technical Information of China (English)

    TANG Sheng-xiang; WEI Xing-hua; JIANG Yun-zhu; D S Brar; G S Khush

    2007-01-01

    Genetic diversity was analyzed with 6 632 core rice cultivars selected from 60 282 Chinese rice accessions on the basis of 12 allozyme loci, Pgil, Pgi2, Ampl, Amp2, Amp3, Amp4, Sdh1, Adh1, Est1, Est2, Est5 and Est9, by starch gel electrophoresis. Among the materials examined, 52 alleles at 12 polymorphic loci were identified, which occupied 96.3% of 54 alleles found in cultivated germplasm of O.sativa L. The number of alleles per locus ranged from 2 to 7 with an average of 4.33. The gene diversity (He) each locus varied considerably from 0.017 for Amp4 to 0.583 for Est2 with an average gene diversity (Ht) 0.271, and Shannon-Wiener index from 0.055 to 0.946 with an average of 0.468. The degree of polymorphism (DP) was in a range from 0.9 to 46.9% with an average of 21.4%. It was found that the genetic diversity in japonica (Keng) subspecies was lower in terms of allele's number, Ht and S-W index, being 91.8, 66.2 and 75.7% of indica (Hsien) one, respectively. Significant genetic differentiation between indica and japonica rice has been appeared in the loci Pgil, Amp2, Pgi2, and Est2, with higher average coefficient of genetic differentiation (Gst) 0.635, 0.626, 0.322 and 0.282, respectively. Except less allele number per locus (3.33) for modern cultivars, being 76.9% of landraces, the Ht and S-W index showed in similar between the modern cultivars and the landraces detected. In terms of allozyme, the rice cultivars in the Southwest Plateau and Central China have richer genetic diversity. The present study reveals again that Chinese cultivated rice germplasm has rich genetic diversity, showed by the allozyme allele variation.

  2. Diversifying selection underlies the origin of allozyme polymorphism at the phosphoglucose isomerase locus in Tigriopus californicus.

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    Sean D Schoville

    Full Text Available The marine copepod Tigriopus californicus lives in intertidal rock pools along the Pacific coast, where it exhibits strong, temporally stable population genetic structure. Previous allozyme surveys have found high frequency private alleles among neighboring subpopulations, indicating that there is limited genetic exchange between populations. Here we evaluate the factors responsible for the diversification and maintenance of alleles at the phosphoglucose isomerase (Pgi locus by evaluating patterns of nucleotide variation underlying previously identified allozyme polymorphism. Copepods were sampled from eleven sites throughout California and Baja California, revealing deep genetic structure among populations as well as genetic variability within populations. Evidence of recombination is limited to the sample from Pescadero and there is no support for linkage disequilibrium across the Pgi locus. Neutrality tests and codon-based models of substitution suggest the action of natural selection due to elevated non-synonymous substitutions at a small number of sites in Pgi. Two sites are identified as the charge-changing residues underlying allozyme polymorphisms in T. californicus. A reanalysis of allozyme variation at several focal populations, spanning a period of 26 years and over 200 generations, shows that Pgi alleles are maintained without notable frequency changes. Our data suggest that diversifying selection accounted for the origin of Pgi allozymes, while McDonald-Kreitman tests and the temporal stability of private allozyme alleles suggests that balancing selection may be involved in the maintenance of amino acid polymorphisms within populations.

  3. Allozyme variation among the spontaneous species of Sorghum section Sorghum (Poaceae).

    Science.gov (United States)

    Morden, C W; Doebley, J; Schertz, K F

    1990-09-01

    A survey of allozyme variation among the spontaneous taxa of Sorghum section Sorghum was undertaken. Eight plants each of 90 accessions representing the diploid S. bicolor (ssp. arundinaceum and drummondii) and the tetraploids S. almum and S. halepense were analyzed for 17 enzyme systems encoded by 30 loci. Low levels of variation were found within and among accessions, although there was more variation than is typical of inbreeding species. We found an average of 3.2 alleles per locus in ssp. arundinaceum, with a mean expected heterozygosity for the accessions of 0.034 and total panmictic heterozygosity of 0.154. An analysis of the apportionment of genetic variation among accessions of ssp. arundinaceum indicated that 26% of the variation occurs within accessions and 74% among accessions. Cultivated sorghum contains far less allozymic variation than ssp. arundinaceum, its presumed progenitor. This is consistent with the prediction that cultivated sorghum experienced a loss of genetic variation during domestication. For the most part, cultivated sorghum contains a subset of the allozymes found in ssp. arundinaceum. Principal component analysis revealed continuous variation among the accessions and geographic regions, with accessions failing to segregate into discrete clusters. However, accessions of race virgatum of ssp. arundinaceum occupied one end of the continuum and were, in that sense, distinguished from the other accessions. Similarly, most accessions of S. halepense and S. almum occupied the central portion of the continuum. The allozymic data presented here are consistent with the hypothesized origin of S. halepense via autopolyploidy or segmental allopolyploidy.

  4. Genetic relationships among five nemipterid fish species from the Indian coast using allozyme analysis

    Digital Repository Service at National Institute of Oceanography (India)

    Menezes, M.R.; Arolkar, U.; Rathod, V.

    . They were then immediately frozen and kept at p120p8 C prior to analyses. Skeletal muscle, liver, heart and eye were dissected from individual specimens. The cell-lysate obtained by freezing and thawing was directly subjected to electrophoresis... for phenotypic analysis. Allozymes were detected by horizontal starch gel electrophoresis following Menezes & Taniguchi (1988). The buffer system used was citric acid- aminopropylmorpholine (pH 6·0) (Clayton & Tretiak, 1972). Nomenclature of locus designations...

  5. Effects of metal contamination from mine tailings on allozyme distributions of populations of Great Plains fishes

    Energy Technology Data Exchange (ETDEWEB)

    Brown, K.; Roark, S. [Wichita State Univ., KS (United States). Dept. of Biological Sciences

    1995-12-31

    This study was conducted to assess the effects of zinc and lead on genetic variability of minnow populations (Gambusia affinis, Pimephales notatus, and Fundulus notatus) sampled from two creeks, one receiving mine drainage (Willow Creek) and one reference (Brush Creek), in the Tri-State Mining district in Kansas. Zinc and lead concentrations were greater in water samples taken from sites in Willow Creek compared to sites sampled in Brush Creek. While total numbers of fish captured from Willow Creek were smaller than numbers taken from Brush Creek, there were no differences in these fish communities for estimates of species diversity, richness and evenness. Genetic differentiation within creeks was rare. However, there was significant differentiation between creeks for allozymes of the enzymes glucose phosphate isomerase (GPI) in F. notatus and P. notatus, malate dehydrogenase (MDH) in G. affinis, and phosphogluconate dehydrogenase (PGDH) in F. notatus. Proportions of heterozygous genotypes of P. notatus and G. affinis were higher in Willow Creek compared to Brush Creek. In vitro experiments were conducted to assess the effects of zinc and lead on sensitivity of enzyme staining during electrophoresis. Results indicated allozyme sensitivity to zinc for GPI and PGDH loci. Other studies suggest that zinc competitively competes with magnesium as a cofactor for these enzymes. Allozymes did not exhibit differential sensitivity to lead. The significant differentiation between creek populations and the results of the in vitro tests indicate a selective effect of zinc on allozymic distributions of these fishes. These results demonstrate the potential use of genetic variability as a bioindicator of heavy metal contamination.

  6. Effects of metal contamination from mine tailings on allozyme distributions of populations of Great Plains fishes

    Energy Technology Data Exchange (ETDEWEB)

    Roark, S.; Brown, K. [Wichita State Univ., KS (United States). Dept. of Biological Sciences

    1996-06-01

    This study was conducted to assess the effects of zinc and lead on genetic variability of minnow populations (Gambusia affinis, Pimephales notatus, and Fundulus notatus) sampled from two creeks, one receiving mine drainage (Willow Creek) and one reference (Brush Creek), in the Tri-State Mining District in Kansas. Zinc and lead concentrations were greater in water samples taken from sites in Willow Creek compared to sites sampled in Brush Creek. Although total numbers of fish captured from Willow Creek were smaller than numbers taken from Brush Creek, there were no differences in these fish communities for estimates of species diversity, richness, and evenness. Genetic differentiation within creeks was rare. However, there was significant differentiation between creeks for allozymes of the enzymes glucose phosphate isomerase (Gpi) in F. notatus and P. notatus, malate dehydrogenase (Mdh) in G. affinis, and phosphogluconate dehydrogenase (Pgdh) in F. notatus. Proportions of heterozygous genotypes of P. notatus and G. affinis were higher in Willow Creek compared to Brush Creek. In vitro experiments were conducted to assess the effects of zinc and lead on sensitivity of enzyme staining during electrophoresis. Results indicated allozyme sensitivity to zinc for Gpi and Pgdh loci, but not for products of the Mdh locus. No sensitivity to lead was noted for allozymes. The significant differentiation between creek populations and the results of the in vitro tests indicate a selective effect of zinc on allozymic distributions of these fishes. These results provide additional support for the use of genetic structure and variability as a bioindicator of heavy metal contamination.

  7. Genetic Variation among 11 Abies concolor Populations Based on Allozyme Analysis

    Institute of Scientific and Technical Information of China (English)

    Zhang Jin-feng; Li Hui; Dong Jian-sheng; Wang Jun-hui

    2005-01-01

    In order to obtain information on the genetic structure of Abies concolor and the genetic variation among 11 populations introduced from America to China, allozyme analysis based on starch gel electrophoresis technology was used. 24 loci of 10allozyme systems were mensurated, and the genetic structure and genetic diversity of the 11 populations of A. concolor evaluated.The results show that the genetic variation among is significant, and the genetic variation within A. concolor populations is more important. In contrast with other conifers, the variation of A. concolor is above the average level of conifers, and higher than the same level ofAbies. The percentage of polymorphic loci (P) was 62.5%, the number of alleles per locus (A) 2.08, the number of effective alleles per locus (Ae) was 1.37, the expected heterozygosity (H) 0.204, and the Shannon information index (I) 0.351 7. There is a short genetic distance (D=0.061) and a low gene flow (Nm=0.839 4) among the 11 introduced populations of A. concolor with high genetic variation. The genetic differentiation coefficient (Gst) was 0.229 5, which is higher than that of the mean in Abies or Pinus.

  8. Hybrids between olive flounder Paralichthys olivaceus and stone flounder Kareius bicoloratus: karyotype, allozyme and RAPD analyses

    Science.gov (United States)

    You, Feng; Wang, Wei; Xu, Dongdong; Zhu, Xiangping; Ni, Jing; Wu, Zhihao; Xu, Yongli; Wang, Xincheng; Zhang, Peijun

    2009-05-01

    The hybrid between olive flounder Paralichthys olivaceus and stone flounder Kareius bicoloratus was produced by artificial insemination of olive flounder eggs with stone flounder sperm. Sinistral and dextral are two types of hybrid progeny after metamorphosis. Karyotypes of both hybrid flounders are the same as those of the two parental species. Of the 22 loci examined from 12 allozymes, 12 confirmed hybridization of the paternal and maternal loci in hybrids and no difference was found in allozyme patterns of sinistral and dextral hybrid fishes. RAPD patterns of these specimens were also studied with 38 primers selected from 104 tested. Among them, the PCR products of 30 primers showed hybridization of the paternal and maternal bands. Genetic variation between hybrids and their parental stocks was analyzed by RAPD using 10 of the above 38 primers. The average heterozygosity and genetic distance were calculated. The results suggested that the filial generation could inherit a little more genetic materials from paternal fish than that from maternal fish.

  9. Hybrids between olive flounder Paralichthys olivaceus and stone flounder Kareius bicoloratus: karyotype, allozyme and RAPD analyses

    Institute of Scientific and Technical Information of China (English)

    YOU Feng; WANG Wei; XU Dongdong; ZHU Xiangping; NI Jing; WU Zhihao; XU Yongli; WANG Xincheng; ZHANG Peijun

    2009-01-01

    The hybrid between olive flounder Paralichthys olivaceus and stone flounder Kareius bicoloratus was produced by artificial insemination of olive flounder eggs with stone flounder Sperm. Sinistral and dextral are two types of hybrid progeny after metamorphosis. Karyotypes of both hybrid flounders are the same as those of the two parental species. Of the 22 loci examined from 12 allozymes,12 confirmed hybridization of the paternal and matemal loci in hybrids and no difference was found in allozyme patterns of sinistral and dextral hybrid fishes. RAPD patterns of these specimens were also studied with 38 primers selected from 104 tested. Among them, the PCR products of 30 primers showed hybridization of the paternal and maternal bands. Genetic variation between hybrids and their parental stocks was analyzed by RAPD using 10 of the above 38 primers. The average heterozygosity and genetic distance were calculated. The results suggested that the filial generation could inherit a little more genetic materials from paternal fish than that from maternal fish.

  10. Genetic variation of natural and cultured stocks of Paralichthys olivaceus by allozyme and RAPD

    Institute of Scientific and Technical Information of China (English)

    YOU Feng; ZHANG Peijun; WANG Keling; XIANG Jianhai

    2007-01-01

    Population genetics of the left-eyed flounder, Paralichthys olivaceus, including natural and cultured stocks distributed in the coastal waters near Qingdao of eastern maritime China, was analyzed in allozyme and RAPD. The results showed that among total 29 gene loci of 15 isozymes, 9 and 7 were polymorphic in natural and cultured stocks, respectively. The status of genetic diversity in P olivaceus is low in terms of polymorphic loci in chi-square test and genetic departure index of Hardy-Weinberg equilibrium. More alleles in IDHP, CAT, GDH and Ldh-C allozymes were found in the fish, which could be used as markers in assortive breeding and distinguishing stock, population or species evolution. Total 88 and 86 RAPD bands ranging from 200 to 2 500 bp were recognized individually in average of 7.8-8.0 bands per primer. The genetic diversity in cultured stock is lower than that in natural ones showing an obviously decreasing genetic divergence. Therefore, effective countermeasures must be taken to protect genetic resources of marine cultured fishes. The 2 markers have their own pros and cons. Combining the 2 markers to investigate the genetic variation of populations is suggested. The results provide basic data of this flounder and they are useful for studying genetic improvement and genetic resources of the fish.

  11. Evaluation of genetic variation in the clown Knifefish, Chitala chitala, using allozymes, RAPD, and microsatellites.

    Science.gov (United States)

    Mandal, Anup; Lal, Kuldeep Kumar; Mohindra, Vindhya; Singh, Rajeev Kumar; Punia, Peyush; Chauhan, U K; Lakra, Wazir Singh

    2009-04-01

    Twenty-seven enzyme systems, six random amplified polymorphic DNA (RAPD) primers, and two microsatellite loci were tested to determine intraspecific divergence in the natural population of the endangered Indian featherback fish, Chitala chitala, for the first time. The 262 samples of C. chitala were collected from six riverine locations in India: the Satluj, Ganga (Ghagra, Bhagirathi, and Brahmaputra), Mahanadi, and Narmada river systems. The analysis revealed population subdivisions, with an F(ST) value from 0.1235 (95% confidence 0.0868-0.1621) for RAPD and a combined F(ST) of 0.0344 (95% confidence 0.0340-0.0350) for microsatellite loci. An analysis of 38 allozyme loci did not reveal any polymorphism in the samples from any of the riverine localities; a possible explanation for this could be that the ancestors of Chitala could have faced a population reduction in prehistoric periods, as low allozyme variation is also reported for other species of Chitala from south Asia. PMID:19184406

  12. Allozyme variation in Czech populations of the invasive spiny-cheek crayfish Orconectes limosus (Cambaridae

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    L. Filipová

    2009-01-01

    Full Text Available The North American spiny-cheek crayfish, Orconectes limosus, was most probably introduced into Europe only once, in 1890. The size of the founding population was just 90 individuals. Low genetic variability resulting from a bottleneck effect during introduction might therefore be supposed in European spiny-cheek crayfish populations. On the other hand, the fast spread of O. limosus in Europe and colonisation of various habitats suggest that this species does not suffer from inbreeding depression due to an introduction bottleneck. We analysed 14 O. limosus populations from the Czech Republic using allozyme electrophoresis to evaluate the level of intra- and among-population genetic variation. Out of eight well-scoring allozyme loci chosen for detailed analysis, six were variable in studied populations, suggesting that sufficient variability was maintained during the introduction. Genetic differentiation of Czech populations of the spiny-cheek crayfish was relatively low and did not show any clear geographic pattern, probably due to long-range translocations by humans.

  13. Starch gel and cellulose acetate electrophoretic analysis of allozyme frequencies in barn swallow (Hirundo rustica) populations at a dioxin contaminated site in northern Louisiana

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — This study compared the genetic variability of Louisiana barn swallows at a dioxin-contaminated wetland to two reference populations. Allozyme frequencies,...

  14. Starch gel analysis of allozyme frequencies in mosquitofish (Gambusia affinis) populations on a dioxin contaminated site/drainage in north Louisiana

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — This study compared the genetic variability of Louisiana mosquitofish at 15 sites in a dioxincontaminated watershed and one site outside the watershed. Allozyme...

  15. Interrelationships of the subgenera of Coryphaenoides (Teleostei: Gadiformes: Macrouridae): synthesis of allozyme, peptide mapping, and DNA sequence data.

    Science.gov (United States)

    Wilson, Raymond R; Attia, Phoebe

    2003-05-01

    DNA sequences of the 12s rRNA mitochondrial gene from 12 species key to the question of the monophyly of the deep-sea fish genus Coryphaenoides (Macrouridae) were analyzed phylogenetically using maximum parsimony and maximum likelihood. The results were compared with those of three previous studies in which allozyme, peptide mapping, and DNA sequence data were similarly analyzed. The allozyme and DNA sequence data suggested that the largest subgenus (Coryphaenoides), which contained most of the species inhabiting continental slopes between approximately 600 and 2000m depth, is monophyletic. Two of the three subgenera containing the species inhabiting abyssal ocean basins below approximately 2000m together formed a sister group to subgenus Coryphaenoides. The macrourids of the abyssal basins and those of the continental slopes thus appear to have experienced separate radiations from a common ancestor. PMID:12695096

  16. Allozyme variation in Pinus cembra and P. sibirica: differentiation between populations and species

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    D.V. Politov

    2013-12-01

    Full Text Available Two closely related Eurasian species of 5-needle pines, Swiss stone pine(Pinus cembra L. and Siberian stone pine (P. sibirica Du Tour occupy two disjunctive parts of the formerly common range in Europe andSiberia, respectively. These forms show so close morphological and genetic similarity that in some classifications they are treated as subspecies. Using a set of 29 allozyme loci (Adh-1,-2, Fdh, Fest-2, Gdh, Got-1,-2,-3, Idh, Lap- 2,-3, Mdh-1,-2,-3,-4, Mnr-1, Pepca, 6-Pgd-1,-2,-3, Pgi-1,-2, Pgm-1,-2, Skdh-1,-2, Sod-2,-3,- 4 we analyzed genetic differentiation within the Alpine-Carpathian part of the range (P.cembra and found relatively low genetic diversity for conifers (HE=0,08 and moderate level of differentiation (FST=7,4%. For thesame loci set within Siberian populations (P. sibirica genic diversity was higher (0,14, while differentiation was lower (3%. The factthat differentiation within the highly fragmented range of Swiss stone pine is just 2.5 times higher than in widespread closely related P.sibirica makes us consider factors other than unlimited gene flow responsible for uniformity of allelic frequencies. Among these factors the leading role belongs to balancing selection.Heterozygote superiority leads to both (i increasing of heterozygosity in course of stand development and (ii through balancing selectionto stable equilibrium state. Under this equilibrium, virtually the same genetic structure is maintained, even when remote and isolatedparts of the species' ranges are compared. For many studied loci, Swiss and Siberian stone pines have the same allelic profiles despite the fact that gene flow among them ceased a long time ago. According to one point of view fragmentation of the formerly united range might take place in the Atlantic time of the Holocene (about 5000 years BC, however, an alternative hypothesis refers to a much earlierPleistocene glacial time. Analysis of a combined data set (P. cembra

  17. Allozyme variation of oleaster populations (wild olive tree) (Olea europaea L.) in the Mediterranean Basin.

    Science.gov (United States)

    Lumaret, R; Ouazzani, N; Michaud, H; Vivier, G; Deguilloux, M-F; Di Giusto, F

    2004-04-01

    As a result of the early domestication and extensive cultivation of the olive tree throughout the Mediterranean Basin, the wild-looking forms of olive (oleasters) presently observed constitute a complex, potentially ranging from wild to feral forms. Allozyme variation was analysed at 10 loci in 31 large and 44 small oleaster populations distributed in various habitats of the Mediterranean Basin and in two populations of the wild subspecies Olea europaea subsp (ssp) guanchica, endemic to the Canary islands and closely related to oleasters. At eight polymorphic loci, 25 alleles were identified. Genetic evidence that nondomesticated oleasters still survive locally was provided by the occurrence of four and one alleles shared exclusively by the eight western and two eastern oleaster populations, respectively, which were collected in forests potentially containing genuinely wild forms according to environmental, historical and demographic criteria. As reported previously from cytoplasmic and RAPDs analysis, substantial genetic differentiation was observed between the eastern oleaster populations genetically close to most olive clones cultivated in the Mediterranean Basin, and the western populations that are related to the wild Canarian populations. In addition, the occurrence of significantly lower heterozygosity in cultivated olive than in oleasters, whatever their origin, suggests that intensive selection involving inbreeding has taken place under cultivation to obtain particular characteristics in the olive cultivars.

  18. Mitochondrial and Allozyme Genetics of Incipient Speciation in a Landlocked Population of Galaxias Truttaceus (Pisces: Galaxiidae)

    Science.gov (United States)

    Ovenden, J. R.; White, RWG.

    1990-01-01

    Galaxias truttaceus is found in coastal rivers and streams in south-eastern Australia. It spawns at the head of estuaries in autumn and the larvae spend 3 months of winter at sea before returning to fresh water. In Tasmania there are landlocked populations of G. truttaceus in a cluster of geologically young lakes on the recently glaciated Central Plateau. These populations have no marine larval stage and spawn in the lakes in spring. Speciation due to land locking is thought to be a frequent occurrence within Galaxias. To investigate the nature of the speciation event which may be occurring within lake populations of G. truttaceus we studied the mitochondrial DNA (mtDNA) and allozyme diversity of both lake and stream populations. Using the presence or absence of restriction sites recognized by 13 six-base restriction endonucleases, we found 58 mtDNA haplotypes among 150 fish collected from 13 Tasmanian and one south-east Australian mainland stream populations. The most parsimonious network relating the haplotypes by site loss or gain was starlike in shape. We argue that this arrangement is best explained by selection upon slightly beneficial mutations within the mitochondrial genome. Gene diversity analysis under Wright's island model showed that the populations in each drainage were not genetically subdivided. Only two of these stream haplotypes were found among the 66 fish analyzed from four lake populations. Despite the extreme lack of mtDNA diversity in lake populations, the observed nuclear DNA heterozygosity of 40 lake fish (0.10355) was only slightly less than that of 82 stream fish (0.11635). In the short time (3000-7000 years) that the lake fish have been landlocked, random genetic drift in a finite, stable-sized population was probably not responsible for the lack of mtDNA diversity in the lake populations. We infer the lake populations have probably experienced at least one, severe, but transitory bottleneck possibly induced by natural selection for life

  19. Start of reproduction and allozyme heterozygosity in Pinus sibirica under different techniques of artificial forest stand establishment

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    S.N. Velisevich

    2013-12-01

    Full Text Available Siberian stone pine (Pinus sibirica Du Tour is one of the main forest-forming tree species in boreal forests of Eurasia. Large edibleseeds of this species have an important resource value because of their high nutritious properties. Development of approaches toestablishment of early cone producing Siberian stone pine stands including utilization of corresponding genetic background is one of the priorities of forest resource management. The goal of our study was to evaluate the effect of stand density on the differentiation of trees bythe age of first reproduction and the relationship of allozyme heterozygosity and morphological traits variability in Siberian stone pine.Morphological and allozyme variability in artificial Pinus sibirica stands with high and low density was investigated. In the high-densitystand the distance between trees was 0.7 and 3 meters (4080 trees per ha while in the lowdensity stand it was 8 and 8 meters (144 treesper ha. Age of formation of first male and female cones was evaluated by retrospective method based on analysis of tracks of cones ona shoot bark. Tree height, diameter and number of male, female and vegetative shoots in a crown of model trees were measured.Genotypes of the trees were determined by 29 isozyme loci coding for 16 enzymes (ADH, FDH, FEST, GDH, GOT, IDH, LAP, MDH, MNR, PEPCA, 6-PGD, PGI, PGM, SDH, SKDH, SOD. In the low-density stand, the portion of generative trees was higher and differentiation of trees by age of reproduction starting was lower in spite of the smaller age of trees as compared to the high-density stand. Inboth samples, the age of formation of first generative organs was related negatively with stem height, stem diameter and number offemale shoots. In the high-density stand, positive relation of age of first reproduction with total number of shoots and number ofmale shoots was found. In both samples nonreproductive trees were less heterozygous at

  20. Allozyme Variation in the Three Extant Populations of the Narrowly Endemic Cycad Dioon angustifolium Miq. (Zamiaceae) from North-eastern Mexico

    OpenAIRE

    GONZÁLEZ-ASTORGA, JORGE; Andrew P. Vovides; CRUZ-ANGON, ANDREA; OCTAVIO-AGUILAR, PABLO; Iglesias, Carlos

    2005-01-01

    • Background and Aims Dioon angustifolium was considered within D. edule. Recent morphometric and allozyme studies on D. edule have shown that D. angustifolium has originated from geographic isolation and is therefore considered to be a separate species. This cycad is endemic to north-eastern Mexico and is known only from three populations in the Sierra Madre Oriental mountain chain. Its populations are small when compared with its southern relative D. edule. In this study, genetic variati...

  1. Morphological and allozyme variation in a collection of Lagenaria siceraria (Molina Standl. from Côte d'Ivoire

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    Koffi KK.

    2009-01-01

    Full Text Available This study describes the intraspecific variation of 30 edible-seed Lagenaria siceraria germplasm accessions from the University of Abobo-Adjamé. These accessions were collected from three (Centre, East and South geographical zones of Côte d’Ivoire. Selection based on seed size by the farmers has resulted in subdividing the species into two cultivars: large-seeded and smallseeded. The morphological diversity study of the collection included 18 accessions and 24 traits. The multivariate analysis of variance (MANOVA showed a significant difference between the two groups of cultivars. Principal component analysis on 13 traits pointed out variations among individuals, mainly on the basis of flower, fruit, and seed size. Dendrogram with UPGMA method allowed clustering of the cultivars. The genetic structure analysis among accessions using allozyme markers showed the following values: 18.95% for the proportion of polymorphic loci (P, 1.21 for the number of alleles (A and 0.053 for observed heterozygosity (Ho. The level of the within accessions genetic diversity (HS = 0.188 was higher than the genetic variation among accessions (DST = 0.082. The estimates of F-statistics indicated a low level of genetic differentiation between accessions (FST = 0.298. Such a value suggested that L. siceraria maintains about 30% of its genetic variation among accessions. Nei genetic distances between the two cultivars were also low (0.002, indicating that cultivars were genetically similar enough to belong to the same genetic group.

  2. Allozyme variation of the endemic and vulnerable Dyera lowii Hook.f. in Central Kalimantan: Implications for genetic resources conservation

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    Tri Suwarni Wahyudiningsih

    2015-12-01

    Full Text Available Dyera lowii is an endemic and vulnerable tree species of commercial value as chewing gum found inpeat swamp forests, scatteredly distributed in Sumatra, Kalimantan, and Peninsular Malaysia. Their existenceis now under severe threat due to habitat conversion. This study is aimed to assess genetic diversity withinfour natural populations (Hampangen, Parahangan, Sebangau, Selat Nusa and one plantation in CentralKalimantan based on allozyme variation. Electrophoresis procedures were conducted with an isoelectricfocusing polyacrylamide slab gel system. The result showed high genetic diversity (HE=0.52 and gene fl ow(3.402 seemed to be effective. A total of 14 alleles were found among all the analysed population. Meannumber of alleles per locus (Aa was 3.206, and the effective number of alleles per locus (Ae was 2.21. Geneticdifferentiation between populations (FST was signifi cant at the moderately level (0.0685. Most allozymevariation was found within population (93.2%. Special attention is essential to conserve a private allele ofGot-1-e (9% at Selat Nusa population. Sebangau population missed the alleles of Est-2-b and Got-1-a, as foundin other populations. Selat Nusa population is expected to enhance the effective management for geneticresources conservation of this vulnerable species in the future.

  3. Microgeographic allozyme differentiation in the hybrid zone of Mytilus galloprovincialis Lmk. and M. edulis L. on the continental European coast

    Science.gov (United States)

    Comesaña, A. S.; Sanjuan, A.

    1997-03-01

    The European Mytilus galloprovincialis Lmk. and M. edulis L. coexist and hybridize in different proportions in extended areas of the British and Atlantic French coasts. M. galloprovincialis typical allozymes seem to predominate in wave exposed areas, at high levels of attachment and in larger mussels in the British hybrid zone. Mussel samples from exposed and sheltered areas, 200 m apart, and from high and low levels of attachment were collected from a location of the French hybrid zone in 1988 92. Pure M. galloprovincialis and M. edulis populations were also taken as controls. Diagnostic enzyme loci for both Mytilus (EST-D *, LAP-1*, MPI*, ODH*) and AP-1 *, LAP-2* and PGM * loci were studied. The frequencies of the M. galloprovincialis typical alleles were significantly greater in exposed populations than in sheltered samples (e.g. 0.729 to 0.803 vs 0.192 to 0.581 for EST-D *90), and at high level of attachment than at low level for the sheltered area (e.g. 0.581 vs 0.192 for EST-D *90). Putative M. galloprovincialis was more abundant on the exposed coast (0.591 and 0.702) than on the sheltered shore, where it predominated at the high shore but not at the low shore location (0.371 vs 0.045). Significantly positive correlations between shell length and typical M. galloprovincialis compound allele frequencies were found only for populations from exposed areas. Relationships between the Mytilus genetic differentiation and ecological factors are discussed.

  4. Latitudinal clines in Drosophila melanogaster: body size, allozyme frequencies, inversion frequencies, and the insulin-signalling pathway

    Indian Academy of Sciences (India)

    Gerdien De Jong; Zoltán Bochdanovits

    2003-12-01

    Many latitudinal clines exist in Drosophila melanogaster: in adult body size, in allele frequency at allozyme loci, and in frequencies of common cosmopolitan inversions. The question is raised whether these latitudinal clines are causally related. This review aims to connect data from two very different fields of study, evolutionary biology and cell biology, in explaining such natural genetic variation in D. melanogaster body size and development time. It is argued that adult body size clines, inversion frequency clines, and clines in allele frequency at loci involved in glycolysis and glycogen storage are part of the same adaptive strategy. Selection pressure is expected to differ at opposite ends of the clines. At high latitudes, selection on D. melanogaster would favour high larval growth rate at low temperatures, and resource storage in adults to survive winter. At low latitudes selection would favour lower larval critical size to survive crowding, and increased male activity leading to high male reproductive success. Studies of the insulin-signalling pathway in D. melanogaster point to the involvement of this pathway in metabolism and adult body size. The genes involved in the insulin-signalling pathway are associated with common cosmopolitan inversions that show latitudinal clines. Each chromosome region connected with a large common cosmopolitan inversion possesses a gene of the insulin transmembrane complex, a gene of the intermediate pathway and a gene of the TOR branch. The hypothesis is presented that temperate D. melanogaster populations have a higher frequency of a ‘thrifty’ genotype corresponding to high insulin level or high signal level, while tropical populations possess a more ‘spendthrift’ genotype corresponding to low insulin or low signal level.

  5. Allozymic variation in the clam genus Eurhomalea (Bivalvia: Veneriidae) along southern South American coast Variación alozímica en el género de almejas Eurhomalea (Bivalvia: Veneriidae) a lo largo de la costa sur de Sudamérica

    OpenAIRE

    M.H GALLARDO; González, C; Mena, C; Lomovasky, B.; Morriconi, E.; E CLASING

    2003-01-01

    The correspondence between allozymic variation and specific differentiation was studied in four populations corresponding to the three nominal, allopatric species of clam genus Eurhomalea (E. rufa, E. lenticularis, E. exalbida) described for southern South America. Allozyme variation scored in 12 loci was high as indicated by heterozygosity levels (15.8-20.7 %) and by the presence of only three monomorphic loci (Hk-2, Icd-2, and Xdh-1). These high estimates of allelic variability were influen...

  6. Ecotypic and allozyme variation of Capsella bursa-pastoris and C. rubella (Brassicaceae along latitude and altitude gradients on the Iberian Peninsula

    Directory of Open Access Journals (Sweden)

    Hoffrogge, Raimund

    1999-12-01

    Full Text Available Life-history traits (onset of flowering, leaf number, rosette diameter, plant height, branching number, fruit dimensions, seed number of Capsella species from the Iberian Península associated with colotúzing ability were compared in a random block field experiment. Data were evaluated by a principal component analysis. Allozymes (AAT, LAP, GDH and leaf types were recorded. C. bursa-pastoris plants originating from low and high elevations of the summer dry Mediterranean climatic zone (Sierra Nevada were early flowering, whereas those originating from the Pyrenees with an alpine climate were late. In C. bursa-pastoris the "rhomboidea" leaf type was very frequent, whereas in C. rubella it was the "heteris" leaf type. There was a change of leaf type frequencies along geographical clines which is explained by adaptive components of the leaf shape. The allozymes displayed a geographical distribuüon pattem and in C. bursa-pastoris a certain multilocus genotype appeared to be a molecular marker for an early flowering ecotype(inicio de la floración, número de hojas, diámetro de la roseta, altura de la planta, número de ramas, dimensiones del fruto y número de semillas de plantas de Capsella procedentes de la Península Ibérica mediante un experimento de bloques aleatorios en el campo. Los datos se evaluaron con un análisis de componentes principales. También se registraron el tipo de hojas y el perfil aloenzimático de las plantas. Las plantas de Capsella bursa-pastoris procedentes de altitudes altas y bajas de la zona climática Mediterránea de verano seco (Sierra Nevada mostraron ser de floración temprana, mientras que las plantas de los Pirineos, con un clima alpino, presentaron una floración tardía. En C. bursa-pastoris el tipo de hoja "rhomboidea" resultó ser el más frecuente, en tanto que en C. rubella lo fue el tipo "heteris". Se observó un cambio en las frecuencias de los tipos de hojas a lo largo de una clina geográfica, lo

  7. Allozyme comparison of two populations of Rineloricaria (Siluriformes, Loricariidae from the Ivaí River, upper Paraná River basin, Brazil

    Directory of Open Access Journals (Sweden)

    Daniel M. Limeira

    2009-01-01

    Full Text Available Two allopatric morphotypes of the genus Rinelocaria were compared through the allozyme electrophoresis technique: one morphotype, R. pentamaculata, from the Keller River in the middle stretch of the Ivaí River basin and the other, R. aff. pentamaculata, from the São João River in the upper portion of the Ivaí River basin. The morphotype from the São João River was collected upstream from the São João waterfall, which is about 80 m deep. Twelve enzymatic systems (AAT, ADH, EST, GCDH, G3PDH, GPI, IDH, LDH, MDH, ME, PGM and SOD were analyzed, which allowed to score 22 loci. Only loci Aat-2, Est-3 and Mdh-C showed polymorphism. The two samples differed in allele frequencies at the three polymorphic loci. The average expected heterozygosity for all loci was 0.0806 ± 0.0447 in the Keller River sample. For the São João River morphotype, this value was 0.0489 ± 0.0350. Nei' s genetic identity and distance between the two populations were respectively 0.9789 and 0.0213. Wright's F IS, F IT and F STover all loci were estimated as 0.3121, 0.4021 and 0.1309, respectively. We consider that the two morphotypes represent species in statu nascendi.

  8. [Revision of the species composition of the wood mice from the genus Sylvaemus from the territory of Rostov oblast using karyological, allozyme and molecular genetic analysis].

    Science.gov (United States)

    Stakheev, V V; Bogdanov, A S; Vodolazhskiĭ, D I

    2011-05-01

    Using karyological, allozyme, and molecular genetic analysis, habitation of the four Sylvaemus wood mice species, pygmy wood mouse (S. uralensis), wood mouse (S. sylvaticus), yellow-necked mouse (S. flavicollis), and yellow-bellied mouse (S. fulvipectus) in Rostov oblast was demonstrated. Sylvaemus uralensis was distributed nearly over nearlythe whole territory of the oblast; S. sylvaticus was found in the central and western parts of the oblast on the right bank area of Don River; S. flavicollis inhabited northern and central parts of the right bank area of Don River; S. fulvipectus was found in the southern parts of the oblast, in the left bank area of Don River. Using the chromosome C-banding technique, it was demonstrated that the pygmy wood mice living in Rostov oblast in the right bank areas of Manych River and Don River in its low course, belonged to the eastern European chromosomal form of S. uralensis. The mice from the outskirts of the town of Salsk, the left bank area of Manych River, were probably hybrids between eastern European and southern European chromosomal forms. Based on the mitochondrial DNA cytochrome b gene fragment sequencing and chromosome C-banding, it was suggested that the wood mice inhabiting Rostov oblast belonged to the southern lineage of S. sylvaticus, living on Apennine Peninsula, Balkan Peninsula, and nearly throughout Ukraine. PMID:21786672

  9. Allozymic variation in the clam genus Eurhomalea (Bivalvia: Veneriidae along southern South American coast Variación alozímica en el género de almejas Eurhomalea (Bivalvia: Veneriidae a lo largo de la costa sur de Sudamérica

    Directory of Open Access Journals (Sweden)

    M.H GALLARDO

    2003-09-01

    Full Text Available The correspondence between allozymic variation and specific differentiation was studied in four populations corresponding to the three nominal, allopatric species of clam genus Eurhomalea (E. rufa, E. lenticularis, E. exalbida described for southern South America. Allozyme variation scored in 12 loci was high as indicated by heterozygosity levels (15.8-20.7 % and by the presence of only three monomorphic loci (Hk-2, Icd-2, and Xdh-1. These high estimates of allelic variability were influenced by the low levels of interspecific genetic similarity (I = 0.64 and for the high conspecific values of genetic identity observed. The high estimates of substructuring found at the species level (F ST = 0.39 contrasted with the low differentiation (F ST = 0.027 and high migration rate (Nm = 9 existing among conspecific samples. Diagnostic allele fixation coinciding with specific recognition was recorded at locus Hk-1 whereas nearly-fixed differences at loci (Adh, alpha-Gpd, Icd-1, Ldh, Odh, Pgm-3 differed sharply in frequency among species. The Wagner procedure and the neighbor-joining algorithm produced a similar tree topology highly related to the geographic distance and to their taxonomic recognition. The lack of coincidence between patterns of allozymic variation and the two distinctive shell morphs (flat and globoid occurring in E. exalbida from Ushuaia bay do not support their taxonomic recognition.Se estudió la correspondencia entre la variación bioquímica y la diferenciación específica en cuatro poblaciones correspondientes a las tres especies nominales y alopátricas en las almejas del género Eurhomalea (E. rufa, E. lenticularis, E. exalbida descritas para la zona sur de Sudamérica. La variación alozímica registrada en 12 loci fue alta como lo indican los altos niveles de heterocigosidad (15,8-20,7 % y por la presencia de solo tres loci monomórficos (Hk-2, Icd-2 y Xdh-1. Esta alta estimación de variabilidad alélica influyó en los bajos

  10. Toxicity of neem seed extract to Tessaratoma papillosa (Drury) relative to its allozyme genotypes%印楝种子提取物对荔枝蝽的毒性及与其等位酶基因型之间的关系

    Institute of Scientific and Technical Information of China (English)

    卢芙萍; 赵冬香; 刘业平; 王爱萍; 陈青

    2006-01-01

    The relationships between the susceptibility to neem seed extract and the allozyme genotypes were examined in the first instar nymphs of Tessaratoma papillosa (Drury) for two polymorphic enzyme loci of Pgi and Mdh using allozyme analysis. Acute exposures of the insect to 5.2 mg/mL (LC50 value) neem seed extract resulted in 51.8% mortality in 24 h. Under the given experimental conditions, insect mortalities were significantly different among certain genotypes and alleles. At locus Pgi, the insects with the Pgi-bb genotype displayed the highest mortality (84%), whereas those with Pgi-aa and Pgi-cc showed the lowest mortalities (0 and 7% , respectively), which were significantly different from that of Pgi-bb. At locus Mdh, the insects with the genotype Mdh-cc and Mdh-aa exhibited the highest mortality (93 % ), but no mortality was observed in the insects with the genotype Mdh-cc. These results clearly indicated that the insects with genotype Mdh-aa and Mdh-cc were significantly different from those with other three genotypes Mdh-ab, Mdh-bb and Mdh-bc in response to neem seed extract. In contrast, the mortalities of the insects with the Pgi-a and Mdh-c allele were the lowest, and were significantly different from those with other alleles. Our studies showed that individuals of T. papillosa with different genotypes had significantly different responses to neem seed extract. Such distinct relationships between the insect susceptibility to neem seed extract and its allozyme genotypes may allow us to use certain genotypes and alleles as genetic markers to assess the susceptibility of T. papillosa to neem seed extract.%用5.2 mg/mL(LC50)的印楝种子提取物对荔枝蝽1龄若虫进行急性毒性处理,24 h死亡率为51.8%.通过等位酶分析检测了死亡与存活试虫两种酶(PGI和MDH),两个基因座(Pgi和Mdh)上各基因型及等位基因与印楝种子提取物毒性之间的关系,进行致死性差异比较研究.结果表明,印楝种子提取物对具

  11. 应用同工酶技术研究我国湖北钉螺(腹足纲:麂眼螺超科:圆口螺科)不稳定螺群体内的遗传变异%ALLOZYME-BASED GENETIC VARIATION WITHIN AN UNSTABLE"POPULATION" OF CHINESE ONCOMELANIA HUPENSIS(GASTROPODA: RISSOACEA: POMATIOPSIDAE)

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    [Objective] To answer the following questions:① For Oncomelania snails collected two years apart from the same locality,has there been genetic divergence?②How much experimental error has there been in studying subsets of these populations? ③As this is an unstable population,what has the net effect been on Hardy-Weinberg equilibrium(Hwe)?[Methods] Allozymes were studied using horizontal starch gel electrophoresis.Data collected from numbers of experiments were conapiled.Data from each collection were divided into two equal subsets based on chronology of the experiments.Thirty-four loci were studied using 72 to 180 snails per subset.[Results] The mean number of alleles per locus ranged frcra 1.5~1.9.With each consecutive subset,the 96 polymorphic loci dropped from 38.2 to 17.6.The mean heterozygosity was very low:0.033 to 0.049 and not significantly different from Hardy-Weinberg expectations.Ten loci and 11 alleles exclusive to the first group were eliminated from the overall study reducing the number of polymorphic loci from 19 to 10.There were significant departures from Hwe at five loci having a substantial number of individuals for each allele.Nei's and Wright's D were 0.003±0.001 and 0.054±0.006 respectively.[Conclusion] ①There were significant errors seen primarily in the results scored' in the earliest experiments.②These earlier errors involving scoring difficult to resolve loci,and interpretation of rare alleles that were not found in later experiment had no significant effect on overall genetic distance.③The use of Wright's D for closely related populations is explained.Results with Nei's D indicated no significant difference among the four subunits; Wright's D yielded significant difference between the collections made two years apart,attributed to the annual flooding of the Yangtze River mixing snails from different localities.④ Major polymorphic loci were not in Hwe as predicted using the unstable population model.⑤One must study 25 or

  12. Allozymes Genetic Diversity of Quercus mongolica Fisch in China

    Institute of Scientific and Technical Information of China (English)

    LI Wenying; GU Wanchun

    2006-01-01

    A gel electrophoresis method was used to study the genetic diversity of 8 Quercus mongolica populations throughout its range in China.Eleven of 21 loci from 13 enzymes assayed were polymorphic.Q.mongolica maintained low level of genetic variation compared with the average Quercus species.At the species level,: the mean number of alleles per locus (A) was 1.905, the percentage of polymorphic loci (P) was 52.38%, the observed heterozygosity (He) was 0.092 and the expected heterozygosity (He) was 0.099.At the population level, the estimates were A =1.421, P =28.976%, Ho= 0.088, He =0.085.Genetic differentiation (Gst was high among populations, it was 0.107.According to the UPGMA cluster analysis based on the genetic distance, 4 populations located in northeast and 2 populations in southwest of the geographical distribution are classified into 2 subgroups, but there was no clear relationship between genetic distance and geographic distance among populations.The low level of genetic diversity of Q.mongolica might be related to the long-term exploitation as economic tree species in history are comparatively seriously disturbed and damaged by human beings, and most of the existing stands are secondary forests.

  13. AFSC/ABL: Sockeye salmon allozyme baseline - 1982-1990

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Genetic data were collected and prepared with the use of protein electrophoresis from 52 spawning locations in southeastern Alaska and northern British Columbia....

  14. Application of allozyme markers for screening of turbot populations along Western Black Sea coast

    Directory of Open Access Journals (Sweden)

    VENELIN NIKOLOV

    2015-08-01

    Full Text Available Data for electrophoretic pattern of 26 loci, resolved for the 8 protein systems (7- enzyme and 1-non-enzyme assayed were used to investigate population structure of turbot along the Bulgarian and Romanian Black Sea coasts using genetic diversity measures. Seventeen loci were polymorphic in all populations and a total of 34 alleles were identified. Four types of tissue: muscle, retina, plasma and haemoglobin were analyzed. The percentage of polymorphic loci was high (65.38% within populations. A low level of genetic differentiation among populations was detected, based on the Shannon’s information index (0.446-0.448 and the coefficient of genetic differentiation between populations (FST =0.014. The overall mean of within-population inbreeding estimate (FIS was (-0.209 and demonstrated low level of inbreeding. The genetic distance (DNei between the populations was low and vary between 0.003 and 0.014. Genetic distances among turbot populations were positively correlated with geographic distances (r = 0.474, but the association was not significant according to the Mantel test (p=0.651 and showed a lack of correlation between genetic distance and the geographic location of populations. Results identified one genetic stock with sufficient gene flow between all the three sites to prevent genetic differentiation from occurring. Only 1.4% of the genetic variation was observed among populations. Results revealed that adopting a single stock model and regional shared management could probably be appropriate for sustainable long-term use of turbot along western Black Sea coast. Determination of the contemporary state of the population distribution will be the prerequisite for determination of adequate measures for exploitation and protection of the existing turbot populations along western Black Sea coast.

  15. AFSC/ABL: Immature chum salmon allozyme ID of mixed stocks

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Immature chum salmon were collected by the F/V Northwest Explorer between September 5 and October 8, during the 2002 BASIS survey across the eastern Bering Sea...

  16. Concordance between life history traits, invasion history, and allozyme diversity of the Everglades invader Melaleuca quinquenervia

    Science.gov (United States)

    During the century following its initial introduction in 1886, the Australian tree Melaleuca quinquenervia(Myrtaceae) dispersed from a few introduction points to occupy over 200,000 ha, primarily in historic Everglades wetlands of southern Florida. Cellulose acetate gel electrophoresis (CAGE) was us...

  17. AFSC/ABL: Rockfish allozyme species identification (Sebastes aleutianus and borealis)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Rougheye rockfish (Sebastes aleutianus) and shortraker rockfish (Sebastes borealis) were collected from the Washington coast, the Gulf of Alaska, the southern...

  18. Genetic Variation of Three Populations of Indian Frog (Hoplobatrachus tigerinus Revealed by Allozyme Marker

    Directory of Open Access Journals (Sweden)

    M. Belal Hossain

    2012-01-01

    Full Text Available The Indian bullfrog, Hoplobatrachus tigerinus plays a significant role in maintaining the natural balance in the ecosystems. It plays an important role in controlling the various agricultural pests because of its omnivorous feeding habit. The aim of the present study is to know the genetic variation of H. tigerinus in three natural habitats. Samples collected from three districts of Bangladesh were analyzed with five enzymes (MDH, LDH, GPI, PGM and EST in CA 6.1 buffer system for their genetic variation. Four polymorphic loci (Mdh-1, Est-1, Gpi-1 and Pgm were interpretable in muscle with starch gel electrophoresis. Among the 5 presumptive loci, the mean proportion of polymorphic loci was observed 80, 80 and 60% in Rangpur, Khulna and Mymensingh populations, respectively. The highest mean number of allele per locus and mean proportion of heterozygous loci per individual were observed in the Rangpur population. The average observed heterozygosity (Ho was 0.163 and expected heterozygosity (He was 0.469. In pair-wise analysis, comparatively higher Nm value (5.507 was estimated between the Rangpur and Khulna populations corresponding lower level of FST value (0.043. The UPGMA dendrogram showed two clusters among the three Indian bullfrog populations. Rangpur and Khulna populations formed one cluster while Mymensingh population formed another cluster. The Mymensingh population separated from Rangpur and Khulna by a genetic distance of 0.177 whereas, the Khulna population is different from the Rangpur population by the genetic distance of 0.052. The results suggested that the considerable genetic variation is maintained among the natural H. tigerinus populations.

  19. AFSC/ABL: Juvenile chum salmon allozyme stock identification, Gulf of Alaska 2000-2004

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Summer surveys (Julyb??August) of juvenile salmon ecology along the continental shelf of the Gulf of Alaska are conducted annually by scientists from the Ocean...

  20. Fin whale MDH-1 and MPI allozyme variation is not reflected in the corresponding DNA sequences

    NARCIS (Netherlands)

    Olsen, Morten Tange; Pampoulie, Christophe; Danielsdottir, Anna K.; Lidh, Emmelie; Berube, Martine; Vikingsson, Gisli A.; Palsboll, Per J.

    2014-01-01

    The appeal of genetic inference methods to assess population genetic structure and guide management efforts is grounded in the correlation between the genetic similarity and gene flow among populations. Effects of such gene flow are typically genomewide; however, some loci may appear as outliers, di

  1. Biochemical systematics of the leaf mining moth family Nepticulidae (Lepidoptera). III. Allozyme variation patterns in the Ectoedemia subbimaculella group

    OpenAIRE

    Steph B J Menken

    1990-01-01

    Gel electrophoretic techniques were used to analyse patterns of variation at 12 genetic loci within and among species of the Ectoedemia subbimaculella group from western Europe. Geographically separated conspecific populations were similar to one another genetically, with the exception of E. subbimaculella where the malate dehydrogenase locus exhibited clinal variation. Genetic differences among species often concerned loci that were monomorphic or slightly polymorphic within populations. Thr...

  2. Biochemical systematics of the leaf mining moth family Nepticulidae (Lepidoptera). III. Allozyme variation patterns in the Ectoedemia subbimaculella group

    NARCIS (Netherlands)

    Menken, Steph B.J.

    1990-01-01

    Gel electrophoretic techniques were used to analyse patterns of variation at 12 genetic loci within and among species of the Ectoedemia subbimaculella group from western Europe. Geographically separated conspecific populations were similar to one another genetically, with the exception of E. subbima

  3. Molecular Analysis of an Allozyme Cline: Alcohol Dehydrogenase in Drosophila Melanogaster on the East Coast of North America

    OpenAIRE

    Berry, A.; Kreitman, M

    1993-01-01

    Clines may either be selectively maintained or be the by-product of nonadaptive processes related to population structure and history. Drosophila melanogaster populations on the east coast of North America show a latitudinal cline in the frequencies of two common electrophoretically distinguishable alleles at the alcohol dehydrogenase locus (Adh), designated Adh-S and Adh-F. This cline may either be adaptive or an artifact of a possible recent dual founding of North American D. melanogaster p...

  4. Allozyme variability in sexual and parthenogenetic freshwater planarians : Evidence for polyphyletic origin of parthenogenetic lineages through hybridization with coexisting sexuals

    NARCIS (Netherlands)

    Pongratz, Norbert; Sharbel, Timothy F.; Beukeboom, Leo W.; Michiels, Nico K.

    1998-01-01

    In Dugesia polychroa, a hermaphroditic planarian, diploid sexual and polyploid pseudogamous parthenogenetic forms exist in separate populations and in sympatry. Parthenogens produce viable, haploid sperm that are exchanged between two individuals during copulation and trigger sperm-dependent parthen

  5. Taxonomic status of Triturus vittatus (Amphibia: Salamandridae) in western Turkey: trunk vertebrae count, genome size and allozyme data.

    NARCIS (Netherlands)

    S.N. Litvinchuk; A.C.M. Zuiderwijk; L.J. Borkin; J.M. Rosanov

    2005-01-01

    The banded newt, Triturus vittatus is suggested to consist of two species (T. ophryticus and T. vittatus). The northern taxon, T. ophryticus, is subdivided into two geographic fragments: the ¿western group¿ of populations from western Anatolian Turkey, and the ¿eastern group¿ distributed in the rema

  6. 卤虫等位酶的遗传控制%GENETIC CONTROL OF ALLOZYMES IN THE BRINE SHRIMP (ARTEMIA)

    Institute of Scientific and Technical Information of China (English)

    董树刚; 付成秋; 程继军; 高明君

    2000-01-01

    应用聚丙烯酰胺凝胶电泳技术分析了孤雌生殖卤虫产生的罕见雄体、两性卤虫及其杂交后代(F1)的酯酶(EST)、超氧物歧化酶(SOD)、过氧化物酶(PRX)、碱性磷酸酶( ALP)、四唑氧化酶(TO)和乳酸脱氢酶(LDH)的同工酶酶谱表型.对编码五种酶的19个位点、35个等位基因的表达进行了遗传分析.结果表明,在EST、PRX和TO酶谱中既有共显性等位基因,又有沉默等位基因的表达;卤虫PRX、ALP和SOD为单体酶,在EST和TO酶谱中还存在着二聚体同工酶;除LDH为单态外,其余五种同工酶为多态酶.

  7. Genetic Diversity in Cellular Slime Molds: Allozyme Electrophoresis and a Monoclonal Antibody Reveal Cryptic Species among Dictyostelium discoideum Strains

    OpenAIRE

    Briscoe, David A.; Gooley, Andrew A.; Bernstein, R.L.; McKay, George M.; Williams, Keith L.

    1987-01-01

    Cellular slime molds have been classified on the basis of a small number of descriptive criteria such as fruiting body color and morphology, and, in heterothallic species, by assignment to compatible mating groups. However, some isolates which are morphologically classified as conspecific do not fall into a simple mating-type classification; for example some are asexual or homothallic. An increasing interest in inter-strain genetic variation in studies of development and simple behavior has l...

  8. Genetic evidence for population expansion in Hydrotaea irritans (Fallèn) (Diptera: Muscidae)

    DEFF Research Database (Denmark)

    Loeschcke, V.; Nielsen, B. O.; Pedersen, A. Aa.;

    2004-01-01

    geographic variation, F-statistics, allozyme electrophoresis, skewed allele frequencies, bottleneck, population expansion......geographic variation, F-statistics, allozyme electrophoresis, skewed allele frequencies, bottleneck, population expansion...

  9. [Allozyme variability and the population genetic structure of the mice Apodemus agrarius, Mus musculus, and Sylvaemus uralensis (Rodenita, Muridae) in Western Siberia].

    Science.gov (United States)

    Zhigaleva, O N

    2014-08-01

    Of the three mouse species inhabiting Western Siberia, the striped field mouse is characterized by the highest level of genetic variation, a uniform distribution of polymorphism indicators, lower values of genetic differentiation, and higher values of gene flow, as compared to the house mouse and pygmy wood mouse. The house mouse populations have abrupt changes in the parameters of protein polymorphism in different localities. This is due to the considerable spatial dissociation of the cities of Siberia and the differing histories of their settlement. Inhabitation of an urban area leads to the partitioning of striped wood mouse populations into groups that considerably differ in allele frequencies and genetic variation indices. These changes are not related to the degree of urbanization and are determined by genetic drift. Some characteristics of these groups, like reduced variability, heterozygote deficit, and deviation from the Hardy-Weinberg equilibrium, limit their adaptive potential and make them dependent on the populations of inter-settlement territories. PMID:25731024

  10. 湖北3种药用淫羊藿植物等位酶多样性与居群遗传结构%Allozyme Diversity and Population Genetic Structure of Three Medicinal Epimedium Species from Hubei

    Institute of Scientific and Technical Information of China (English)

    徐艳琴; 李作洲; 王瑛; 黄宏文

    2007-01-01

    Three Epimedium species, E.pubescens Maxim., E.sagittatum (Sieb.& Zucc.) Maxim., and E.wushanense T.S.Ying,which are sympatrically distributed in the western Hubei Province, have been used in traditional Chinese medicine (TCM) for about 2,000 years.Genetic variability and population genetic structure of 11 natural populations of these Epimedium species were investigated using isoelectric focusing in thin-layer polyacrylamide slab gels.Of the 22 enzyme systems prescreened, six coding for 13loci and 45 alleles were resolved, which were used for analyzing genetic diversity and population structure at both intraspecific and interspecific levels.The results showed that: 1) high levels of genetic diversity were observed in all three species (A = 2.6-3.2, P =69.2%-84.6%, Ho = 0.274-0.377, HE = 0.282-0.369), which were higher than that of other herbaceous and animal-pollinated species with similar life-history characteristics; 2) there was significant deviation from Hardy-Weinberg Equilibrium, with one half of the loci showing heterozygote excess and the other homozygote excess, in all populations, suggesting the complicated breeding system of Epimedium species; 3) the low level of intraspecific and interspecific genetic differentiation (GST= 0.0246-0.0409 and 0.0495-0.1213, respectively) indicated a high level of gene flow among populations and close genetic relationship among the three species; and 4) UPGMA cluster analysis further showed that E.pubescens was more closely related to E.sagittatum than to E.wushanense, which was in good agreement with the morphological characters and the recent phylogenetic analysis of these species.On the basis of these results, it was concluded that the mixed breeding system, long-lived perennial life form, ancient evolutionary history, and seed dispersal by ants in Epinedium are responsible for the genetic variation and population structure of these species.%采用超薄平板微型聚丙烯酰胺等电聚焦电泳方法对湖北3种淫羊藿属(Epimedium L.)药用植物:柔毛淫羊藿(E.pubescens Maxim.)、箭叶淫羊藿(E.sagittatum(Sieb.& Zucc.)Maxim.)和巫山淫羊藿(E.wushanense T.S.Ying)的11个自然居群进行了等位酶种内遗传多样性和居群遗传结构以及种间遗传关系的研究.6个酶系统在3种淫羊藿植物中检测到13个酶位点共45个等位基因,分析结果表明:1)3种淫羊藿均具有较高的遗传多样性水平(A=2.6-3.2,P=69.2%-84.6%,Ho=0.274-0.377,HE=0.282-0.369),远高于多年生草本植物和依靠动物传粉植物的平均水平;2)所有居群都显著偏离Hardy-Weinberg平衡,大多数多态位点固定指数(F)明显偏离于0且正负值各半,暗示该属植物可能具有复杂的繁育系统;3)种内和种间的遗传分化度均较低,分别为GST=0.0246-0.0409和0.0495-0.1213,表明种内居群间存在较高的基因流和种间较近的遗传关系;4)聚类分析表明柔毛淫羊藿与箭叶淫羊藿的亲缘关系更近,这与形态学特征、花瓣演化趋势及系统发育分析等方面的研究的结果相吻合.讨论分析认为3种淫羊藿植物的遗传变异特性是由淫羊藿属植物异交与克隆繁殖的混合繁育系统、多年生的生活特性、古老的进化历史和种子的蚁播特性等多因素共同决定的.

  11. Allozyme Divergence among Fagopyrum urophyllum Populations in Southweast China%西南地区硬枝野荞麦(Fagopyrum urophyllum(Bur.et Franch.) H. Gross)天然居群的等位酶变异

    Institute of Scientific and Technical Information of China (English)

    罗定泽; 侯鑫; 赵佐成

    2002-01-01

    采用等位酶电泳技术研究了云南省中北部昆明、富民、宾川3县(市)及四川省西南布拖县境内的硬枝野荞麦(Fagopyrum urophyllum(Bur.et Franch.)H.Gross)6个天然居群的遗传分化.硬枝野荞麦居群间遗传分化程度较低,FST值为0.161.居群间遗传一致度(I)和遗传距离(D)的均值分别为0.927 4和0.077 6,并提出了保护建议.

  12. 西南地区金荞麦(Fagopyrum dibotrys(D.Don) Hara)居群的等位酶变异%Allozyme Divergence Among Fagopyrum dibotrys Populations in Southweast China

    Institute of Scientific and Technical Information of China (English)

    罗定泽; 侯鑫; 赵佐成

    2000-01-01

    采用等位酶电泳技术研究了云南省和四川省西南共五县境内金荞麦(Fagopyrum dibotrys(D.Don) Hara)5个天然居群间的遗传分化.金荞麦居群间遗传分化程度较低,FST值为0.225,居群间遗传一致度和遗传距离的均值分别为0.905 3和0.100 5,并提出了保护建议.

  13. Genetic Analysis of Shikimate Dehydrogenase Allozymes,a Genetic Marker Resisting to Chustnut-blight,in Hybrid of Castanea mollissima×C.dentata%中国板栗与美洲栗杂种抗性遗传标记--莽草酸脱氢酶(SKD)的遗传分析

    Institute of Scientific and Technical Information of China (English)

    李作洲; 黄宏文

    2004-01-01

    采用超薄平板聚丙烯酰胺等电聚焦技术和单株家系、杂交家系分析方法对中国板栗(Castanea mollissima)和美洲栗(C.dentata)莽草酸途径的关键性酶--莽草酸脱氢酶(SKD)的遗传变异进行了研究.对单株家系、种内杂交家系和种间回交BC1群体的研究结果表明:栗属莽草酸脱氢酶共有4个活性区域,活性基因座具有物种特异性,并符合孟德尔式遗传,美洲栗的Skd-1与Skd-2为独立分离基因座,但中国板栗的Skd-3与Skd-4则为紧密连锁基因座.通过对中国板栗和美洲栗杂种F2代群体分离的杂种酶谱表型分析,表明中国板栗Skd-3,-4连锁群可能在基因组中存在重复,并推断美洲栗的Skd-1和Skd-2可能分别由重复连锁群独自变异演替而成.莽草酸脱氢酶重复基因座的存在并表达出酶活性,可能使中国板栗的莽草酸途径更有效率,增强中国板栗在受到栗疫病菌等微生物攻击时的反应应答,从而提高其抗性.研究认为莽草酸脱氢酶有作为抗性辅助选择遗传标记的潜力,在回交育种拯救美洲栗计划中具有潜在的应用价值.

  14. Genetic divergence in the Indian mackerel Rastrelliger kanagurta (Cuv) from the coastal waters of Peninsular India and the Andaman Sea

    Digital Repository Service at National Institute of Oceanography (India)

    Menezes, M.R.; Naik, S.; Martins, M.

    Genetic divergence in the Indian mackerel Rastrelliger kanagurta (Cuv) from the west coast (Goa), east coast (Madras) and the Andaman Sea was estimated, using allozyme markers. Skeletal muscle and eye proteins were electrophoretically analysed for 5...

  15. Phylogeography of two parthenogenetic sawfly species (Hymenoptera: Tenthredinidae): relationship of population genetic differentiation to host plant distribution

    NARCIS (Netherlands)

    Müller, C.; Barker, A.; Boevé, J.L.; Jong, de P.W.; Vos, de H.; Brakefield, P.M.

    2004-01-01

    This study compares the population genetic structure of two obligate parthenogenetic sawfly species, Aneugmenus padi (L.) Zhelochovtsev and Eurhadinoceraea ventralis (Panzer) Enslin (Hymenoptera: Tenthredinidae). Allozymes were used to detect genetic differences in larvae collected at different site

  16. Clinal variation for amino acid polymorphisms at the Pgm locus in Drosophila melanogaster.

    OpenAIRE

    Verrelli, B C; Eanes, W. F.

    2001-01-01

    Clinal variation is common for enzymes in the glycolytic pathway for Drosophila melanogaster and is generally accepted as an adaptive response to different climates. Although the enzyme phosphoglucomutase (PGM) possesses several allozyme polymorphisms, it is unique in that it had been reported to show no clinal variation. Our recent DNA sequence investigation of Pgm found extensive cryptic amino acid polymorphism segregating with the allozyme alleles. In this study, we characterize the geogra...

  17. Mating system and genetic diversity of a rare desert legume Ammopiptanthus nanus (Leguminosae)

    Institute of Scientific and Technical Information of China (English)

    Guo-Qing CHEN; Hong-Wen HUANG; Daniel J CRAWFORD; Bo-Rong PAN; Xue-Jun GE

    2009-01-01

    Ammopiptanthus nanus is an endangered evergreen shrub endemic to the deserts of central Asia and plays an important role in delaying further desertification. We examined allozyme variation and AFLP diversity in A. Nanus populations and investigated the mating system of this species using progeny arrays assayed for poly-morphic allozyme loci. Mating system analysis in the Keyi'eryongke'er population showed low levels of out-crossing, and strong inbreeding depression. Low levels of genetic variation were detected at both population (allozyme, Pp=14.0%,A=1.14, He=0.031; AFLP, Pp=14.5%, Shannon's information index I=0.063) and species (allozyme, Pp=21.1%,A=1.21, He=0.040; AFLP, Pp=20.9%, I=0.083) levels; while moderate genetic differentia-tion existed among populations, as indicated by allozymes (GST=0.081) and AFLP (GST=0.151-0.193). Founder effect, bottlenecks in evolutionary history, the mixed mating system and co-ancestry may have influenced the level of genetic diversity in A. Nanus. Markers of both types provide new insights for conservation management, indicating that the Biao'ertuokuoyi and Keyi'eryongke'er populations should be given priority for in situ conser-vation and regarded as seed sources for ex situ conservation.

  18. GENETIC AND MORPHOLOGICAL VARIATION OF POPULATIONS BELONGING TO THE BULINUS TRUNCATUS/TROPICUS COMPLEX (GASTROPODA; PLANORBIDAE) IN SOUTH WESTERN ZIMBABWE

    DEFF Research Database (Denmark)

    Mukaratirwa, S.; Kristensen, Thomas K.; Siegismund, Hans Redlef;

    1998-01-01

    , in respect of allozyme variation (5 polymorphic loci), shell morphology (9 variables), copulatory organ and chromosome number. Comparative data were obtained from snails from north western Zimbabwe identified definitely as B. tropicus. Analysis of the genetic structure revealed a high degree of polymorphism...

  19. STARVATION RESISTANCE IN DROSOPHILA-MELANOGASTER IN RELATION TO THE POLYMORPHISMS AT THE ADH AND ALPHA-GPDH LOCI

    NARCIS (Netherlands)

    OUDMAN, L; VANDELDEN, W; KAMPING, A; BIJLSMA, R

    1994-01-01

    In view of the world-wide latitudinal cline of the Adh and alpha Gpdh allozyme frequencies of Drosophila melanogaster and the interactions between these loci, experiments were performed to study the phenotypic effects of these loci. Starvation resistance, oxygen consumption, body weight, protein con

  20. Newts in time and space : the evolutionary history of Triturus newts at different temporal and spatial scales

    NARCIS (Netherlands)

    Espregueira Themudo, Gonçalo

    2010-01-01

    The interspecific relationships in the genus Triturus are incompletely known. In CHAPTER 2, we attempt to resolve them by using allozyme and mtDNA data. Despite the large number of markers used, relationships continue to elude us. The results suggest that speciation in the group occurred during a sh

  1. VARIATION IN FITNESS-RELATED CHARACTERS AMONG SMALL AND LARGE POPULATIONS OF SALVIA-PRATENSIS

    NARCIS (Netherlands)

    OUBORG, NJ; VANTREUREN, R

    1995-01-01

    1 The threatened perennial Salvia pratensis is restricted to a few isolated populations in the Netherlands, which vary in size from 10 to 1500 flowering individuals. Small populations are known to have significantly lower allozyme diversity than the large populations, probably as a consequence of ge

  2. Hidden diversity in marine algae : Some examples of genetic variation below the species

    NARCIS (Netherlands)

    vanOppen, MJH; Klerk, H; Olsen, JL; Stam, WT

    1996-01-01

    An important aspect of marine biodiversity studies is identification of species and subspecies complexes. Here we present a number of examples from marine algae in which allozymes, DNA sequences and RAPDs are used to identify cryptic species and explore phylogenetic-population level relationships ov

  3. A Multivariate Study on Genetic Variation in Teak (Tectona grandis (L.))

    DEFF Research Database (Denmark)

    Kjær, Erik Dahl; Siegismund, Hans Redlef; Suangtho, V.

    1996-01-01

    Genetic differentiation between populations of teak (Tectona grandis (L.)) was examined in 9 quantitative characters and 10 allozyme loci. Large differences between populations were revealed in the quantitative traits. Regional patterns were revealed by multivariate analysis of the data, but ther...

  4. Founder effects and genetic population structure of brown trout (Salmo trutta) in a Danish river system

    DEFF Research Database (Denmark)

    Hansen, Michael Møller; Mensberg, Karen-Lise Dons

    1996-01-01

    The influence of founder effects on the genetic population structure of brown trout (Salmo trutta) was studied in a small Danish river system. Samples of trout from seven locations were analysed by allozyme electrophoresis and mitochondrial DNA restriction fragment length polymorphism analysis. For...

  5. Density and depth variations of Daphnia multilocus genotypes during a summer period in Lake Maarsseveen

    NARCIS (Netherlands)

    Ringelberg, J.; van Gool, E.; Brehm, Michaela

    2004-01-01

    The genotype composition of a Daphnia population complex during a summer period in Lake Maarsseveen (The Netherlands) was determined by allozyme analysis. The depth distribution, diel vertical migration and several parameters of the total population were measured. Young-of-the-year (0+) perch (Perca

  6. Phylogeography and genetic identification of the newly-discovered populations of torrent salamanders (Rhyacotriton cascade and R. variegatus) in the central Cascades (USA)

    Science.gov (United States)

    2006-01-01

    Newly discovered populations of Rhyacotritonidae were investigated for taxonomic identity, hybridization, and sympatry. Species in the genus Rhyacotriton have been historically difficult to identify using morphological characters. Mitochondrial (mtDNA) 16S ribosomal RNA sequences (491 bp) and allozymes (6 loci) were used to identify the distribution of populations occurring intermediate between the previously described ranges of R. variegatus and R. cascadae in the central Cascade Mountain region of Oregon. Allozyme and mitochondrial sequence data both indicated the presence of two distinct evolutionary lineages, with each lineage corresponding to the allopatric distribution of R. cascadae and R. variegatus. Results suggest the Willamette River acts as a phylogeographic barrier limiting the distribution of both species, although we cannot exclude the possibility that reproductive isolation also exists that reinforces species' distributions. This study extends the previously described geographical ranges of both R. cascadae and R. variegatus and defines an eastern range limit for R. variegatus conservation efforts.

  7. Multiple forms of octopine dehydrogenase in Strombus luhuanus (mollusca, gastropoda, strombidae): genetic basis of polymorphism, properties of the enzymes, and relationship between the octopine dehydrogenase phenotype and the accumulation of anaerobic end products during exercise.

    Science.gov (United States)

    Baldwin, J; England, W R

    1982-10-01

    Octopine dehydrogenase (ODH) is electrophoretically polymorphic in the gastropod mollusk Strombus luhuanus. The frequencies of the six electrophoretic phenotypes in the Heron Island population, together with the molecular weight values of 38,000 obtained for each of the three forms of the enzyme, demonstrate that the monomeric enzyme is encoded by three codominant alleles at a single locus. The purified allozymes are indistinguishable in terms of Km values for substrates, product inhibition by octopine and NAD, pH optima, and substrate inhibition by pyruvate. No statistically significant correlations were found between the ODH phenotype and the maximum activities of ODH or alanopine dehydrogenase, the capacity for anaerobic muscle work, or the accumulation of octopine or strombine/alanopine during exercise. It would appear that the ODH allozymes may be functionally equivalent both in vitro and in vivo. PMID:7181845

  8. Evidence for fine scale genetic structure and estuarine colonisation in a potential high gene flow marine goby (Pomatoschistus minutus)

    OpenAIRE

    Pampoulie, C.; Gysels, E.S.; Maes, G.E.; Hellemans, B.; Leentjes, V.; A. G. Jones; Volckaert, F.A.M.J.

    2004-01-01

    Marine fish seem to experience evolutionary processes that are expected to produce genetically homogeneous populations. We have assessed genetic diversity and differentiation in 15 samples of the sand goby Pomatoschistus minutus (Pallas, 1770) (Gobiidae, Teleostei) from four major habitats within the Southern Bight of the North Sea, using seven microsatellite and 13 allozyme loci. Despite its high dispersal potential, microsatellite loci revealed a moderate level of differentiation (overall F...

  9. Desert springs: deep phylogeographic structure in an ancient endemic crustacean (Phreatomerus latipes.

    Directory of Open Access Journals (Sweden)

    Michelle T Guzik

    Full Text Available Desert mound springs of the Great Artesian Basin in central Australia maintain an endemic fauna that have historically been considered ubiquitous throughout all of the springs. Recent studies, however, have shown that several endemic invertebrate species are genetically highly structured and contain previously unrecognised species, suggesting that individuals may be geographically 'stranded in desert islands'. Here we further tested the generality of this hypothesis by conducting genetic analyses of the obligate aquatic phreatoicid isopod Phreatomerus latipes. Phylogenetic and phylogeographic relationships amongst P. latipes individuals were examined using a multilocus approach comprising allozymes and mtDNA sequence data. From the Lake Eyre region in South Australia we collected data for 476 individuals from 69 springs for the mtDNA gene COI; in addition, allozyme electrophoresis was conducted on 331 individuals from 19 sites for 25 putative loci. Phylogenetic and population genetic analyses showed three major clades in both allozyme and mtDNA data, with a further nine mtDNA sub-clades, largely supported by the allozymes. Generally, each of these sub-clades was concordant with a traditional geographic grouping known as spring complexes. We observed a coalescent time between ∼2-15 million years ago for haplotypes within each of the nine mtDNA sub-clades, whilst an older total time to coalescence (>15 mya was observed for the three major clades. Overall we observed that multiple layers of phylogeographic history are exemplified by Phreatomerus, suggesting that major climate events and their impact on the landscape have shaped the observed high levels of diversity and endemism. Our results show that this genus reflects a diverse fauna that existed during the early Miocene and appears to have been regionally restricted. Subsequent aridification events have led to substantial contraction of the original habitat, possibly over repeated Pleistocene

  10. Geographic diff erentiation between populations of the starfi sh Asterina pectinifera

    OpenAIRE

    MATSUOKA, Norimasa; Asano, Hirofumi

    2009-01-01

    The genetic differentiation and relationships among five local populations of the common starfish Asterina pectinifera were studied by allozyme analysis of 12 enzymes. The localities of five local populations examined were as follows: Asamushi from Mutsu Bay; Simoburo from Shimokita Peninsula; Esashi, Fukaura and Atsumi from northern parts of Japan Sea. From allele frequencies data in 23 genetic loci scored, the genetic identities(I) and genetic distances(D)between populations were calculated...

  11. Genetic composition and diploid hybrid speciation of a high mountain pine, Pinus densata, native to the Tibetan plateau.

    OpenAIRE

    WANG, X. R.; Szmidt, A E; Savolainen, O.

    2001-01-01

    Pinus densata has been suggested to have originated from hybridization events involving P. tabulaeformis and P. yunnanensis. In this study, allozyme differentiation at 12 loci was studied in 14 populations of P. tabulaeformis, P. densata, and P. yunnanensis from China. The observed genetic composition of P. densata supported the hybrid hypothesis and showed varying degrees of contribution from P. yunnanensis and P. tabulaeformis among its populations. These data, together with previous chloro...

  12. Molecular systematics, phylogeny and ecology of anisakid nematodes of the genus Anisakis Dujardin, 1845: an update

    OpenAIRE

    Mattiucci S.; Nascetti G.

    2006-01-01

    Advances in the taxonomy and ecological aspects concerning geographical distribution and hosts of the so far genetically recognised nine taxa of the nematodes belonging to genus Anisakis (i.e. A. pegreffii, A. simplex s.s., A. simplex C, A. typica, A. ziphidarum, Anisakis sp., A. physeteris, A. brevispiculata and A. paggiae) are here summarized. Genetic differentiation and phylogenetic relationships inferred from allozyme (20 enzyme-loci) and mitochondrial (sequences of cox-2 gene) markers, a...

  13. Small-scale clinal variation, genetic diversity and environmental heterogeneity in the marine gobies Pomatoschistus minutus and P. lozanoi (Gobiidae, Teleostei)

    OpenAIRE

    Gysels, E.S.; Leentjes, V.; Volckaert, F.A.M.J.

    2004-01-01

    Genetic variation was assayed at 14 allozyme loci in estuarine, coastal and offshore samples of Lozano's goby, Pomatoschistus lozanoi and the sand goby, P. minutus. Samples were taken from locations on the Belgian Continental Shelf and in the Schelde estuary with a range of environmental heterogeneity. We evaluate whether any differences in (1) the degree of genetic variation and (2) allele frequencies at the various loci exist within samples occurring in various habitats on the BCS and in th...

  14. Clinal genetic variation and isolation by distance in the European eel Anguilla anguilla (L.)

    OpenAIRE

    Maes, G.E.; Volckaert, F.A.M.J.

    2002-01-01

    The genetic variability and structure of the European eel (Anguilla anguilla L.) in populations throughout Europe was reassessed using 15 allozymic loci, seven of which were polymorphic. Seven sites were sampled on a latitudinal gradient across the natural continental range, extending from southern France to southern Norway. Heterozygosity (He = 0.05) and level of polymorphism (P = 0.43) were comparable to other marine fish. Populations were poorly differentiated (GST = 0.014, FST = 0.002), w...

  15. Genetic Differentiation between Geographically Distant Populations of DROSOPHILA MELANOGASTER

    OpenAIRE

    Rama S Singh; Hickey, Donal A; David, Jean

    1982-01-01

    We have studied allozyme variation at 26 gene loci in nine populations of Drosophila melanogaster originating on five different continents. The distant populations show significant genetic differentiation. However, only half of the loci studied have contributed to this differentiation; the other half show identical patterns in all populations. The genetic differentiation in North American, European and African populations is correlated with the major climatic differences between north and sou...

  16. Can Diversifying Selection Be Distinguished from History in Geographic Clines? A Population Genomic Study of Killifish (Fundulus heteroclitus)

    OpenAIRE

    Strand, Allan E.; Larissa M Williams; Marjorie F Oleksiak; Sotka, Erik E.

    2012-01-01

    A common geographical pattern of genetic variation is the one-dimensional cline. Clines may be maintained by diversifying selection across a geographical gradient but can also reflect historical processes such as allopatry followed by secondary contact. To identify loci that may be undergoing diversifying selection, we examined the distribution of geographical variation patterns across the range of the killifish (Fundulus heteroclitus) in 310 loci, including microsatellites, allozymes, and si...

  17. The Origin of Workerless Parasites in Leptothorax (S. Str.) (Hymenoptera: Formicidae)

    OpenAIRE

    Jürgen Heinze

    1995-01-01

    The evolutionary origin of workerless parasitic ants parasitizing colonies of Leptothorax (s.str.) is investigated using data on morphology, chromosome number, and allozyme phenotype of both social parasites and their hosts. Of the three previously proposed pathways, the evolution of workerless parasites from guest ants or slave-makers is unlikely, at least according to a phenogram obtained by UPGMA clustering of Nei's similarities based on seven enzymes, lntraspecific evolution of the worker...

  18. Detection of Genetic Variation and Genetic Diversity in Two Indian Mudskipper Species (Boleophthalmus boddarti, B. dussumieri) using RAPD Marker

    OpenAIRE

    Vellaichamy RAMANADEVI; Muthusamy THANGARAJ; Anbazhagan SURESHKUMAR; Jayachandran SUBBURAJ

    2013-01-01

    Due to the environmental changes and habitat destruction the mudskipper fish population is decreasing in recent years. To predict the fish population structure, frequent manual survey and molecular methods are widely used. Molecular markers such as RAPD, microsatellite, allozyme, D-loop haplotype are frequently adopted to assess the population structure of an organism. In this study ten- arbitrary primers were screened to estimate the genetic relationships and diversity of two mudskipper spec...

  19. Mating system of Calluna vulgaris: self-sterility and outcrossing estimations

    OpenAIRE

    Mahy, G.; Jacquemart, Anne-Laure

    1998-01-01

    The evolutionary significance of a mixed mating system is currently under debate. Calluna vulgaris (L). Hull, a widespread European shrub, is likely to undergo mixed mating because of geitonogamy. Mating system was investigated in three populations of C. vulgaris is by means of greenhouse controlled crosses, pollen tube observations, and outcrossing rate estimations from allozyme markers. The species is highly self-sterile, most probably as a result of early inbreeding depression. Mean fruit ...

  20. Evolutionary Genetics of Rainbow Trout, Parasalmo gairdnerii (Richardson)

    OpenAIRE

    Berg, William J.

    1987-01-01

    Starch-gel electrophoresis was used to obtain allozyme data from 114 populations of rainbow-series trout. Seventy-three alleles were segregating at 24 genetic loci. An additional seven loci were monomorphic in all populations. Eight genetically discrete intraspecific population-groups were identified and formal nomenclatural recognition of their subspecific status was suggested. The widespread coastal rainbow trout subspecies, Parasalmo gairdnerii gairdnerii was found to have higher levels of...

  1. Reproductive isolation and genetic differentiation of ferox trout from sympatric brown trout in Loch Aweand Loch Laggan, Scotland

    OpenAIRE

    Duguid, A.; Prodohl, Paulo; Ferguson, A.

    2006-01-01

    Molecular marker studies reported here, involving allozymes, mitochondrial DNA and microsatellites, demonstrate that ferox brown trout Salmo trutta in Lochs Awe and Laggan, Scotland, are reproductively isolated and genetically distinct from co-occurring brown trout. Ferox were shown to spawn primarily, and possibly solely, in a single large river in each lake system making them particularly vulnerable to environmental changes. Although a low level of introgression seems to have occurred with ...

  2. On the presence of Daphnia galeata in Lake Orta (N. Italy

    Directory of Open Access Journals (Sweden)

    Marina MANCA

    2006-08-01

    Full Text Available Lake Orta is a very interesting environment because of its history of heavy chronic pollution and biota re-colonization. It was the first deep lake in Italy in which allozyme techniques were used to investigate clonal diversity. In 1986, a newly established Daphnia obtusa population, able to colonize stressed environments, resulted composed by just one multilocus genotype, detected through an analysis of 27 different allozymes, fifteen of which active and stable for up to 12 generations. This result was interpreted as indicative of a colonization by a single clone, able to establish after a strong selection. This species was allochthonous for the lake, and in 1996 was replaced by a Daphnia longispina of the same morphotype as that originally described from its pelagic environment, the latter apparently remaining the only Daphnia species also in the lake’s littoral until 2001, i.e. until a regular sampling to monitor the lake was accomplished. During an accidental sampling in 2004, for detecting the occurrence and prevalence of parasites in Daphnia parental species and hybrids in several lakes located North and South of the Alps, Daphnia galeata was first found in Lake Orta’s pelagic environment, as revealed by morphological and allozyme analyses. Lake Orta zooplankton was then resampled in June 2006, to detect species as well as clonal composition of the Daphnia population, using the same techniques of morphotype and allozyme analyses. We expected to find low clone diversity and the occurrence of hybrids, whose success is enhanced in disturbed environments. Although preliminary, our results confirm that clone diversity Lake Orta’s Daphnia population is low, thus suggesting a recent colonization by D. galeata and providing evidence for a founder effect. In addition, the detection of the M variant at the AO locus, we interpret as a rare allele of D. galeata/D. longispina hybrids, perfectly fits the hypothesis of an enhancement of hybrid

  3. Both geometric morphometric and microsatellite data consistently support the differentiation of the Apis mellifera M evolutionary branch

    OpenAIRE

    Miguel, Irati; Baylac, Michel; Iriondo, Mikel; Manzano, Carmen; Garnery, Lionel; Estonba, Andone

    2011-01-01

    International audience Traditional morphometrics, allozymes, and mitochondrial data have supported a close relationship between the M branch subspecies A. m. iberiensis and the North African subspecies (A branch). However, studies using nuclear DNA markers have revealed a clear distinction between the latter and the two European M branch subspecies. In help resolve this paradox, we analyzed 663 colonies from six European and African subspecies. A geometric morphometrics approach was applie...

  4. Reproductive strategies and genetic variability in tropical freshwater fish

    OpenAIRE

    Maria Dolores Peres Lassala; Erasmo Renesto

    2007-01-01

    We estimated the genetic variability of nine fish species from the Brazilian upper Paraná River floodplain (Astyanax altiparanae, Hoplias malabaricus, Leporinus lacustris, Loricariichthys platymetopon, Parauchenipterus galeatus, Pimelodus maculatus, Rhaphiodon vulpinus, Roeboides paranensis and Serrasalmus marginatus) based on data for 36 putative allozyme loci obtained using corn starch gel electrophoresis of 13 enzymatic systems: aspartate aminotransferase (EC 2.6.1.1), acid phosphatase (EC...

  5. Concordance of nuclear and mitochondrial DNA markers in detecting a founder event in Lake Clark sockeye salmon

    Science.gov (United States)

    Ramstad, Kristina M.; Woody, Carol Ann; Habicht, Chris; Sage, G. Kevin; Seeb, James E.; Allendorf, Fred W.

    2007-01-01

    Genetic bottleneck effects can reduce genetic variation, persistence probability, and evolutionary potential of populations. Previous microsatellite analysis suggested a bottleneck associated with a common founding of sock-eye salmon Oncorhynchus nerka populations of Lake Clark, Alaska, about 100 to 400 generations ago. The common foundingevent occurred after the last glacial recession and resulted in reduced allelic diversity and strong divergence of Lake Clarksockeye salmon relative to neighboring Six Mile Lake and LakeIliamna populations. Here we used two additional genetic marker types (allozymes and mtDNA) to examine these patterns further. Allozyme and mtDNA results were congruent with the microsatellite data in suggesting a common founder event in LakeClark sockeye salmon and confirmed the divergence of Lake Clarkpopulations from neighboring Six Mile Lake and Lake Iliamna populations. The use of multiple marker types provided better understanding of the bottleneck in Lake Clark. For example, the Sucker Bay Lake population had an exceptionally severe reduction in allelic diversity at microsatellite loci, but not at mtDNA. This suggests that the reduced microsatellite variation in Sucker Bay Lake fish is due to consistently smaller effective population size than other Lake Clark populations, rather than a more acute or additional bottleneck since founding. Caution is urged in using reduced heterozygosity as a measure of genetic bottleneck effects because stochastic variance among loci resulted in an overall increase in allozyme heterozygosity within bottlenecked Lake Clark populations. However, heterozygosity excess, which assesses heterozygosity relative to allelic variation, detected genetic bottleneck effects in both allozyme and microsatellite loci. 

  6. Separate effects of triploidy, parentage and genomic diversity upon feeding behaviour, metabolic efficiency and net energy balance in the Pacific oyster Crassostrea gigas

    OpenAIRE

    Hawkins, Ajs; Magoulas, A.; HERAL, Maurice; Bougrier, Serge; Naciri-graven, Y; Day, AJ; Kotoulas, G

    2000-01-01

    Triploid oysters were induced using cytochalasin B upon retention of either the first (meiosis I triploids) or the second (meiosis II triploids) polar body in embryos from a single cohort derived from mixed parentage. Allozyme and microsatellite assays enabled the confirmation of both parentage and triploidy status in each oyster. Comparison of meiosis I triploids, meiosis II triploids and diploid siblings established that improved physiological performance in triploids was associated with...

  7. Chromosomal similarity between the Scaly-headed parrot (Pionus maximiliani), the Short-tailed parrot (Graydidascalus brachyurus) and the Yellow-faced parrot (Salvatoria xanthops) (Psittaciformes: Aves): a cytotaxonomic analysis

    OpenAIRE

    Renato Caparroz; José Maurício Barbanti Duarte

    2004-01-01

    Behavior, morphology, allozyme studies and DNA hybridization and sequencing data all suggest the independent evolution of the Old and New World parrots and support tribe status for the American species, although the phylogenetic relationships within this tribe are still poorly understood. A previous study has shown that the Yellow-faced parrot (Amazona xanthops Spix 1824) exhibits large karyotypic differences compared to the other Amazona species and suggested that this species should be rena...

  8. Genetic variation among agamid lizards of the trapelus agiliscomplex in the caspian-aral basin

    Energy Technology Data Exchange (ETDEWEB)

    Macey, J. Robert; Ananjeva, Natalia B.

    2004-05-19

    Allozyme variation is examined in eight populations of Trapelus from the Caspian-Aral Basin of the former USSR. Thirty-one loci (15 variable) exhibit remarkably low levels of genetic variation with only a Nei's genetic distance of 0.117 across 2500 km. An isolated population on the European side of the Caspian Sea is found to phenetically cluster inside the Asian populations examined, suggesting that it should not be considered taxonomically distinct.

  9. A FORTRAN program for the calculation and analysis of two-locus linkage disequilibrium coefficients.

    Science.gov (United States)

    Black, W C; Krafsur, E S

    1985-08-01

    A FORTRAN program was written that calculates composite linkage disequilibrium coefficients from genotypic data. Chi-square tests determine whether coefficients calculated for allele and locus pairs are significantly greater than zero. A subroutine is provided that partitions the variance in linkage disequilibrium into within- and between-subpopulation components. Output obtained from analysis of allozyme data collected from natural subpopulations of the house fly (Musca domestica L.) are included to illustrate features of the program.

  10. Heterosis, marker mutational processes and population inbreeding history.

    OpenAIRE

    Tsitrone, A; Rousset, F.; David, P.

    2001-01-01

    Genotype-fitness correlations (GFC) have previously been studied using allozyme markers and have often focused on short-term processes such as recent inbreeding. Thus, models of GFC usually neglect marker mutation and only use heterozygosity as a genotypic index. Recently, GFC have also been reported (i) with DNA markers such as microsatellites, characterized by high mutation rates and specific mutational processes and (ii) using new individual genotypic indices assumed to be more precise tha...

  11. Genetic structure and indirect estimates of gene flow in three taxa of Cucurbita (Cucurbitaceae) in western Mexico.

    Science.gov (United States)

    Montes-Hernandez, Salvador; Eguiarte, Luis E

    2002-07-01

    Cultivated squash (Cucurbita argyrosperma ssp. argyrosperma and C. moschata) are important in the Mexican traditional agroecosystem. They are typically cultivated within maize fields where adjacent populations of a wild, close relative, C. argyrosperma ssp. sororia, occur. Consequently, there are ample opportunities for gene flow between domesticated and free-living Cucurbita populations. We used allozymes to examine genetic variation and gene flow among these three Cucurbita taxa in the state of Jalisco in Western Mexico. Twelve polymorphic allozyme loci were used to calculate genetic diversity for 16 populations of Cucurbita. We found high levels of genetic variation: polymorphism of 0.96, mean allelic diversity of 2.08, average expected heterozygosity 0.407, and little differentiation among conspecific populations (D = 0.081; F(ST) = 0.087; N(e)m = 5.22). These findings indicate that Cucurbita possess a high pollen dispersal potential, a somewhat surprising result considering they have specialist pollinators. Unweighted pair group method with arithmetic means (UPGMA) analysis of allozymes suggests the existence of at least two distinct groups of populations, one consisting of both subspecies of C. argyrosperma and another consisting of C. moschata.

  12. Duplication of Locus Coding of Malate Dehydrogenase in Populus tomentosa Carr.

    Institute of Scientific and Technical Information of China (English)

    2005-01-01

    Horizontal starch-gel electrophoresis was used to study crude enzyme extraction from young leaves of 234 clones of Populus tomentosa Carr. selected from nine provenances in North China. Ten enzyme systems were resolved. One hundred and fifty-six clones showing unusual allozyme band patterns at locus Mdh-1 were found. Three allozyme bands at locus Mdh-1 were 9:6:1 in concentration. Further studies on the electrophoretic patterns of ground mixed pollen extraction of 30 male clones selected at random from the 156 clones were conducted and it was found that allozyme bands at locus Mdh-1 were composed of two dark-stained bands and a weak band. Only one group of the malate dehydrogenase (MDH) zymogram composed of two bands was obtained from the electrophoretic segregation of pollen leachate of the same clones. A comparison of the electrophoretic patterns one another suggested that the locus Mdh-1 coding malate dehydrogenase in diploid species of P. tomentosa was duplicated. The duplicate gene locus possessed three same alleles and was located in mitochondria. The locus duplication of alleles coding malate dehydrogenase in P. tomentosa was discovered and reported for the first time.

  13. Genetic analysis of ecological relevant morphological variability in Plantago lanceolata L. : 2. Localisation and organisation of quantitative trait loci.

    Science.gov (United States)

    Wolff, K

    1987-04-01

    Morphological variability was analysed in an F2-generation derived from crosses between two ecotypes of Plantago lanceolata L. Six allozyme loci, localised in five linkage groups, were used as markers. For two marker loci, Got-2 and Gpi-1, segregations did not fit monogenic ratios. In the linkage groups to which these two loci belonged, male sterility genes appeared to be present. In these crosses, male sterility (type 3, as described by Van Damme 1983) may be determined by two recessive loci located in the linkage groups of Got-2 and of Gpi-1. Many correlations of morphological and life history characters with allozyme markers were observed. The quantitative trait loci did not appear to be concentrated in major gene complexes. Often many loci were involved, sometimes with effects opposite to those expected from the population values. Main effects of the linkage groups appeared to be more important than interaction effects in determining variability. It also appeared that there is a positive correlation between the number of heterozygous allozyme loci and generative growth.

  14. Genetic analysis of ecological relevant morphological variability in Plantago lanceolata L. : 2. Localisation and organisation of quantitative trait loci.

    Science.gov (United States)

    Wolff, K

    1987-04-01

    Morphological variability was analysed in an F2-generation derived from crosses between two ecotypes of Plantago lanceolata L. Six allozyme loci, localised in five linkage groups, were used as markers. For two marker loci, Got-2 and Gpi-1, segregations did not fit monogenic ratios. In the linkage groups to which these two loci belonged, male sterility genes appeared to be present. In these crosses, male sterility (type 3, as described by Van Damme 1983) may be determined by two recessive loci located in the linkage groups of Got-2 and of Gpi-1. Many correlations of morphological and life history characters with allozyme markers were observed. The quantitative trait loci did not appear to be concentrated in major gene complexes. Often many loci were involved, sometimes with effects opposite to those expected from the population values. Main effects of the linkage groups appeared to be more important than interaction effects in determining variability. It also appeared that there is a positive correlation between the number of heterozygous allozyme loci and generative growth. PMID:24241302

  15. Genetic structure and long-distance dispersal in populations of the wingless pest springtail, Sminthurus viridis (Collembola: Sminthuridae).

    Science.gov (United States)

    Roberts, John M K; Weeks, Andrew R

    2011-02-01

    The lucerne flea, Sminthurus viridis (Collembola: Sminthuridae) (L.) is a major pest of broadacre agriculture across southern Australia. Few molecular studies have been conducted on S. viridis and none have examined its population genetics, despite the importance for developing effective control strategies. Here, we characterize the genetic structure of Australian populations using three allozyme and eight microsatellite loci, as well as sequencing a fragment of the mitochondrial DNA cytochrome oxidase I gene. We found that S. viridis in Australia are diploid, sexually reproducing and exhibit significant population structure as a result of limited gene flow. Despite significant differentiation between populations, there was very low cytochrome oxidase subunit I (COI) gene sequence variation, indicating the presence of a single species in Australia. The observed structure only marginally complied with an 'isolation by distance' model with human-mediated long-distance dispersal likely occurring. Allozymes and microsatellites gave very similar FST estimates, although differences found for novel alternative estimates of differentiation suggest that the allozymes did not capture the full extent of the population structure. These results highlight that control strategies may need to vary for locally adapted S. viridis populations and strategies aimed at limiting the spread of any future pesticide resistance will need to manage the effects of human-mediated dispersal. PMID:21219669

  16. Genetic Differentiations among the Populations of Salvia japonica (Lamiaceae and Its Related Species

    Directory of Open Access Journals (Sweden)

    SUDARMONO

    2008-03-01

    Full Text Available Morphological and genetic variations within Salvia japonica (Lamiaceae and its related species in Japan were analyzed for clarifying their taxonomic significance. The genetic variations were explored through chloroplast and nuclear ribosomal DNA sequences and allozyme polymorphisms. Since chromosome numbers characterized the genus of Salvia, we also examined whether the karyotypes were different. We examined 58 populations of S. japonica and 14 populations of others species of Salvia. Among the populations of S. japonica represented four forms (f. japonica, f. longipes, f. lanuginosa and f. albiflora. The size of chromosomes were various among Salvia spp. Based on the allozyme as well as the DNA sequence, the populations of S. japonica separated from the others Salvia species. The populations of S. japonica exhibited four combinations of the morphological characters. However, these combinations did not correlate to the four forms of S. japonica. In addition, the morphological variations did not correlate to the allozyme and DNA sequences. It is suggested that the four morphological variations as well as the four form of S. japonica should not considered to be a taxonomic unit; accordingly, S. japonica were considered to be still at the early stage of speciation process.

  17. Panax ginseng natural populations: their past, current state and perspec-tives

    Institute of Scientific and Technical Information of China (English)

    Yuri N ZHURAVLEV; Olga G KOREN; Galina D REUNOVA; Tamara I MUZAROK; Tatiyana Yu GORPENCHENKO; Irina L KATS; Yuliya A KHROLENKO

    2008-01-01

    Aim:The mating system of Panax ginseng, genetics and ontogenetic structure of its natural populations of Primorye (Russia) were investigated. Methods: Genetic diversity was assessed using allozyme and the fluorescently based au-tomated amplified fragment length polymorphism (AFLP) and simple sequence repeats (SSR) markers. Results: Total genetic diversity at species level is low with allozyme assay (0.023), and high with AFLP (0.255) and SSR (0.259) meth-ods. It is observed within populations according to allozyme (>99%), AFLP (>85%), and SSR (>73%) assays. The indices of genetic variability distribution point out the re-colonization of the Sikhote-Alin by ginseng plants from southern refuges during the warming period in the early Holocene. The capability of gin-seng plants to cross- and self-pollinate was shown and the assumption that Panax ginseng is a facultative apomictic plant was confirmed. The reproductive system of ginseng possesses high plasticity and stability of the fertilization process that help the species to survive in stress conditions. Disturbances caused by external or internal factors can be reduced due to the morphogenetic potential of ginseng ovule or apomictic embryo development. Analysis of life stages structure of gin-seng populations demonstrates that all of them are not full-constituents because some life stages are absent or occur rarely. Conclusion: In all 3 populations, virgin and young generative individuals are predominant. This means that popu-lations studied are viable and the reintroduction of natural ginseng population is possible yet.

  18. Farmed cod escapees and net-pen spawning left no clear genetic footprint in the local wild cod population

    Directory of Open Access Journals (Sweden)

    Rebekka Varne

    2015-11-01

    Full Text Available This study investigated a potential genetic introgression from farmed to wild cod Gadus morhua L. in the Trondheimsfjord, Norway. During the first 2 yr of operation of a cod farm in the inner part of the fjord, 2 large escape events and extensive pen spawning were reported. Analyses of 4 allozyme markers revealed no significant changes in allele frequencies between samples of wild cod before and after cod farming, although prominent allele frequency differences were demonstrated between wild and farmed samples. Analyses of 10 DNA markers showed a significant change between pre- and post-farming samples, due to contradictory allele frequency differences at Tch11, Pan I and Gmo132. Excluding those 3 markers due to null alleles (Tch11 and selection (Gmo132 and Pan I, the DNA markers paralleled the non-changed allele frequency signal from the allozymes. The topographies of the allozyme- and DNA-based dendrogram of the samples were congruent. Recaptures of tagged and released farmed cod indicated a seemingly random diffusion throughout the fjord and ended after approx. 6 mo. During an ongoing pen spawning, plankton net surveys sampling for cod eggs in the surroundings of the cod farm suggested the eggs originated from the farm. No larvae were present in the plankton samples. The apparent absence of introgression is explained relative to fitness and survival of pen-spawned larvae and adult escapees, and to a purging effect of the estuarine circulation of the Trondheimsfjord.

  19. Genetic relationships and reproductive-isolation mechanisms among the Fejervarya limnocharis complex from Indonesia (Java) and other Asian countries.

    Science.gov (United States)

    Djong, Tjong Hon; Islam, Mohammed Mafizul; Nishioka, Midori; Matsui, Masafumi; Ota, Hidetoshi; Kuramoto, Mitsuru; Khan, Md Mukhlesur Rahman; Alam, Mohammad Shafiqul; Anslem, De Silva; Khonsue, Wichase; Sumida, Masayuki

    2007-04-01

    In order to elucidate the genetic relationships and reproductive-isolation mechanisms among the Fejervarya limnocharis complex from Indonesia and other Asian countries, allozyme analyses and crossing experiments were carried out using 208 individuals from 21 localities in eight Asian countries. The allozyme analyses revealed that 17 enzymes examined were controlled by genes at 27 loci, and that 7.9 phenotypes were produced by 5.2 alleles on average. The two species recognized in F. limnocharis sensu lato from Southeast Asia (i.e., F. limnocharis sensu stricto and F. iskandari) were found to occur sympatrically at three localities (Bogor, Cianjur and Malingping), all on Java, Indonesia. Fejervaya iskandari was dominant at each of these localities and showed substantial geographic genetic variation. Laboratory-produced hybrids between F. limnocharis and F. iskandari from Java became underdeveloped and died at the tadpole stage, suggesting that these species are completely isolated by hybrid inviability. Hybrids between topotypic F. limnocharis and the Malaysian and Japanese conspecific populations developed normally to metamorphosis. Likewise, hybrids between topotypic F. iskandari and the Thailand and Bangladesh conspecific populations also showed normal viability throughout larval development. The present allozyme analyses and crossing experiments strongly suggested the presence of two distinct forms, the large type and the small type, in the F. limnocharis complex from Asia, and further subdivision of the large type into the F. limnocharis assemblage and the F. iskandari assemblage. The small type was found in samples from India, Thailand, Bangladesh and Sri Lanka, and included at least three different species. The sample from Pilok, Thailand, was considered to represent an undescribed species.

  20. [Detection of the mitochondrial DNA haplotype characteristic of the least cisco (Coregonus sardinella, Valenciennes, 1848) in the vendace (C. albula, Linnaeus, 1758) population of Vodlozero (the Baltic Sea basin)].

    Science.gov (United States)

    Borovikova, E A; Makhrov, A A

    2009-01-01

    Analysis of the nucleotide sequence of the mitochondrial ND-1 gene in the vendace population in lake Vodlozero (the eastern part of the Baltic Sea basin) revealed a sequence variant that is closely related to that of the least cisco of Siberia (the Indigirka River). Thus, together with the results of morphological and allozyme analysis of this population performed earlier, the results obtained in this study are suggestive of the immigration of the least cisco to the Baltic Sea basin during the last glaciation.

  1. Molecular population genetics of Dioscorea tokore, a wild yam species

    International Nuclear Information System (INIS)

    High levels of genetic diversity have been found in natural populations of the wild yam species Dioscorea tokoro. Genetic diversity was measured by investigating: (1) the allozyme allele frequenzies; (2) the nucleotide difference in haplotypes of the Pgi locus; and (3) microsatellite variation. Most of the genetic diversity was found to reside within each population and the diversity caused by population differentiation appeared to be small. The implications of the results for yam genetic conservation are discussed. (author). 21 refs, 1 fig., 3 tabs

  2. Towards mapping the Dioscorea genome

    International Nuclear Information System (INIS)

    Yams are important starchy tuber crops in (sub-) tropical countries of the world. Despite their importance in the regional economy, no serious attempt has been made toward their improvement. In order to obtain basic knowledge of the genetics of yams, we are trying to establish a linkage map of a wild yam species, Dioscorea tokoro. So far, six allozyme markers, six STMS markers and twenty AFLP markers have been identified. They will be used for linkage mapping of a population comprising 80 progeny obtained from a controlled cross. (author)

  3. Esterase and acid phosphatase polymorphism in the fig tree (Ficus carica L.).

    Science.gov (United States)

    Valizadeh, M

    1977-12-01

    The genetics of two enzymatic loci, esterase (Est-D) and acid phosphatase (AcP-A), were studied by means of polyacrylamide gel electrophoresis in the fig tree (Ficus carica L.). Two codominant alleles are described at the Est-D locus and four codominant alleles at the AcP-A locus. Heterozygotes at the AcP-A locus have a hybrid band, thus showing that the AcP-A allozymes, are at least dimer molecules. Both loci are independent of the male sterility factor in F. carica. The polymorphism in four natural populations was investigated for both loci. A significant deficiency of heterozygotes was observed.

  4. Epigenetics of dominance for enzyme activity

    Indian Academy of Sciences (India)

    Kuldip S Trehan; Kulbir S Gill

    2002-03-01

    We have isolated and purified two parental homodimers and a unique heterodimer of acid phosphatase [coded by Acph-11.05() and Acph-10.95()] from isogenic homozygotes and heterozygotes of Drosophila malerkotliana. and produce qualitatively different allozymes and the two alleles are expressed equally within and across all three genotypes and and play an equal role in the epigenetics of dominance. Subunit interaction in the heterodimer over a wide range of H+ concentrations accounts for the epigenetics of dominance for enzyme activity.

  5. A FORTRAN program for analysis of genotypic frequencies and description of the breeding structure of populations.

    Science.gov (United States)

    Black, W C; Krafsur, E S

    1985-08-01

    A FORTRAN program, "Genestats" was designed to analyse genotypic and allelic frequencies in subpopulations. The genotypes of individuals gathered from electrophoretic analysis at one or more loci are submitted. The program subsequently calculates allele frequencies, determines if significant heterogeneity exists among subpopulations, tests for departures from random mating in subpopulations and calculates F-statistics. A description of the statistical methods is provided. Printout from analysis of allozyme data collected from field subpopulations of the house fly (Musca domestica L.) is provided to illustrate and evaluate the computational methods.

  6. Genetic ecotoxicology II: population genetic structure in mosquito fish exposed in situ to radionuclides

    International Nuclear Information System (INIS)

    DNA polymorphism in mosquito fish (Gambusia affinis), as revealed by RAPD (randomly amplified polymorphic DNA) and allozyme analysis, was compared to relative amounts of DNA strand breakage in blood and liver tissues. Mosquito fish were exposed to radionuclide contamination in situ and to X-rays in the laboratory. The types of RAPD metrics used were the number of RAPD bands per individual and the frequency of certain RAPD bands. In a previous study, it was noted that in some instances the number of RAPD bands and the frequency of certain RAPD bands were elevated in radionuclide-contaminated sites relative to reference sites. In the present study, it was found that the median molecular length (MML) of the DNA (which is inversely proportional to the amount of DNA strand breakage) was correlated in several cases to the number of RAPD bands per individual. In addition, for those RAPD bands that occurred at a higher frequency in mosquito fish from radionuclide-contaminated sites, DNA strand breakage was often lower for those fish with than without these RAPD bands. RAPD data obtained on mosquito fish exposed to X-rays in the laboratory paralleled those from the field. Furthermore, analysis showed that heterozygotes for the allozyme locus nucleoside phosphorylase were more prevalent in radionuclide-contaminated sites and had fewer DNA strand breaks than did homozygotes. These results provide additional evidence that changes in population genetic structure of mosquito fish exposed to a genotoxicant (radiation) can be detected at the DNA level

  7. Structure of Allozymatic Diversity of Ten Temperate and Adapted Exotic Breeding Populations of Maize (Zea mays L.)

    Institute of Scientific and Technical Information of China (English)

    ZHENG Da-hao; YU Yang; WANG Zhen-ping; LI Yan-ru

    2009-01-01

    Ten temperate and adapted exotic breeding populations of maize were studied with electrophoretic techniques. Three isozyme systems coded by nine allozyme loci were used for evaluating the genetic variability within and among populations.The results revealed that 78.57% of allozyme loci were polymorphic. Low allelic variation with a mean number of 1.84 alleles per locus per population was detected. But, these populations still maintained higher level of heterozygosity;moreover, the exotic populations had greater gene diversity than the temperate populations. All the populations were non-panmictic with negative Wright's fixation indexes (-0.091- -0.424). The tropical BS16 was typified by maximum allelic richness, percent of polymorphic loci and heterozygosity. More than 93% of the gene diversity maintained within populations, and the genetic differentiation among populations was low (0.002-0.191). Multivariate analysis demonstrated that the tropical BS29 diverged from other populations in the reverse direction. The temperate BS9 and tropical BS 16 were divergent each other, and highly differentiated from other temperate and tropical populations, consequently, these two populations would be analogically postulated as potential germplasms to establish new heterotic groups for temperate maize breeding programs.

  8. Genetic relatedness of Legionella longbeachae isolates from human and environmental sources in Australia

    International Nuclear Information System (INIS)

    The genetic relatedness of Legionella longbeachae isolated in Australia since 1987 was investigated by restriction fragment length polymorphism (RFLP) analysis and allozyme electrophoresis. Three radiolabeled probes were used in Southern hybridizations for the RFLP studies. They were Escherichia coli 16S and 23S rRNA and cloned fragments of L. longbeachae selected empirically from genomal banks in lambda and a cosmid. The legionellae included in the study comprised 11 Legionella longbeachae serogroup 1 organisms isolated form humans, 28 L. longbeachae serogroup 1 isolates from environmental sources, 3 L. longbeachae serogroup 2 environmental isolates. These were compared with the American Type Culture Collection reference strains of both serogroups and some other related Legionella species. Results of allozyme and RFLP analysis showed that all the isolates from humans and all but three of the environmental L. longbeachae serogroup 1 isolates were closely related. They were also closely related to L. longbeachae serogroup 1 ATCC 33462. There was wider variation among the three L. longbeachae serogroup 2 environmental isolates. One of these was closely related to L. longbeachae serogroup 2 ATCC 33484. RFLP studies with the rRNA probe provided the most discrimination among isolates but did not distinguish between the two serogroups

  9. Genetic structure of natural populations: Final technical report

    International Nuclear Information System (INIS)

    We determined the LD50 for individuals with any one of four genetic constitutions. The LD50 was in kR units (S and F refer to the two common alleles found in natural populations and N is a mull allele) S/S 5.31, F/F 4.61, S/F 4.19, N/N 3.16. These results are as expected under the hypothesis the SOD is involved in radio-resistance and the degree of protection is a function of SOD specific activity. S codes for an allozyme that has the highest in vitro specific activity while N reduces the amount of enzyme to 3.5% of the normal level. Natural selection experiments in population cages were carried out for 13 generations. In control populations, the frequency of the S allele decreases from the initial frequency of 0.50 to an equilibrium value 0.1 to 0.2 in about 10 generations. In populations with the larvae receiving 4 KR in each generation, s reaches an equilibrium frequency of 0.6; when the irradiation was no longer applied, the frequency of S started declining, eventually reaching 0.1 to 0.2. These results corroborate the hypothesis that SOD protects against irradiation and that the degree of protection is correlated by the in vitro specific activity of the allozymes. 29 refs., 4 tabs

  10. Diversity and divergence in Cistus salvifolius (L.) populations from contrasting habitats.

    Science.gov (United States)

    Farley, R A; McNeilly, T

    2000-01-01

    Cistus salvifolius L. is a widespread Mediterranean shrub, occurring over a wide range of environments. Given the degree of habitat differentiation, and geographic isolation of some populations, adaptation to local conditions and hence population divergence might be expected to have occurred. To test this hypothesis morphology and allozyme diversity was measured in 13 populations collected from contrasting habitats around the Mediterranean. Leaf morphology (length, width and petiole length) and internode length varied widely between populations. Leaf width and internode length were negatively correlated with longitude, and leaf length was negatively correlated with mean rainfall. All populations were polymorphic at all allozyme loci studied, and no populations showed significant difference between levels of expected and observed heterozygotes. Allelic diversity (Hs) within populations was high, and populations from the more extreme sites showed no decrease in diversity or predominance of rare genotypes, suggesting there is little selection for characters favouring survival in local conditions. Some populations from highly contrasting habitats, in terms of rainfall, appeared to be genetically similar. However, there were differences between some populations, in areas less than 1 km apart, which have similar geography and climate. Results suggest that the C. salvifolius populations examined may not be as adapted to local environmental conditions as expected. Periodic fires, gene flow, and environmental heterogeneity may all help maintain genetic diversity and hinder adaptation. PMID:11075513

  11. The role of stress proteins in responses of a montane willow leaf beetle to environmental temperature variation

    Indian Academy of Sciences (India)

    Elizabeth P Dahlhoff; Nathan E Rank

    2007-04-01

    The heat shock response is a critical mechanism by which organisms buffer effects of variable and unpredictable environmental temperatures. Upregulation of heat shock proteins (Hsps) increases survival after exposure to stressful conditions in nature, although benefits of Hsp expression are often balanced by costs to growth and reproductive success. Hsp-assisted folding of variant polypeptides may prevent development of unfit phenotypes; thus, some differences in Hsp expression among natural populations of ectotherms may be due to interactions between enzyme variants (allozymes) and Hsps. In the Sierra willow leaf beetle Chrysomela aeneicollis, which lives in highly variable thermal habitats at the southern edge of their range in the Eastern Sierra Nevada, California, allele frequencies at the enzyme locus phosphoglucose isomerase (PGI) vary across a climatic latitudinal gradient. PGI allozymes differ in kinetic properties, and expression of a 70 kDa Hsp differs between populations, along elevation gradients, and among PGI genotypes. Differences in Hsp70 expression among PGI genotypes correspond to differences in thermal tolerance and traits important for reproductive success, such as running speed, survival and fecundity. Thus, differential Hsp expression among genotypes may allow functionally important genetic variation to persist, allowing populations to respond effectively to environmental change.

  12. Population genetic structure and mating system in the hybrid zone between Pinus sibirica Du Tour and P. pumila (Pall. Regel at the Eastern Baikal Lake shore

    Directory of Open Access Journals (Sweden)

    E.A. Petrova

    2013-12-01

    Full Text Available Genetic structure of sympatric Pinus sibirica Du Tour and P. pumila (Pall. Regel populations and putative interspecific hybrids between them was analyzed in the Baikal Lake region (Barguzin Biosphere Natural Reserve, Davsha River basin by means of 31 allozyme loci controlling 18 enzyme systems. Several alleles at loci Adh-1, Fest-2, Lap-3, Pgi-1, Sod-3 and Skdh-1 were diagnostic for P. sibirica, while alleles typical for P. pumila were detected at loci Gdh, Got-3, Lap-3, Mdh-2, Mdh-4, Pepca, Pgi-1, Pgd-2, Pgd-3, Pgm-1 and Pgm-2. All hybrids were heterozygous for the diagnostic Skdh-2 locus. Classification into hybrids and parental species using PCA analysis of multilocus allozyme genotypes had good correspondence with diagnoses made by morphological and anatomical analyses. Approximately 27% of embryos in P. pumila seeds had P. sibirica paternal contribution, and 8% of haplotypes in effective pollen pool combined alleles typical for P. pumila and P. sibirica, and therefore were classified as pollinated by the hybrids. About 83% of embryos in seeds from the hybrids most likely originated from fertilization by P. sibirica pollen, 14% from P. pumila and 3% from hybrid trees. This result favours the view that hybrids make both male and female contributions to the reproductive output of the population and confirm the presence of backcrosses and F2 hybrids.

  13. [Spatial Distribution of Intron 2 of nad1 Gene Haplotypes in Populations of Norway and Siberian Spruce (Picea abies-P. obovata) Species Complex].

    Science.gov (United States)

    Mudrik, E A; Polyakova, T A; Shatokhina, A V; Bondarenko, G N; Politov, D V

    2015-10-01

    The length and sequence variations among intron 2 haplotypes of the mitochondrial DNA nad1 gene have been studied in the Norway and Siberian spruce (Picea abies (L.) H. Karst.-P. obovata Ledeb.) species complex. Twenty-two native populations and 15 provenances were analyzed. The distribution of the northern European haplogroup (haplotypes 721, 755, 789, 823, 857, 891, and 925) is delimited in the west by the Ural region inclusively. Haplotype 712 is widespread in populations of Siberia, in the Far East and in northeastern Russia. A novel variant of the Siberian haplogroup (780) containing three copies of the first minisatellite motif (34 bp) was found for the first time. The absence of an admixture of the northern European and Siberian haplotypes in the zone of spruce species introgression previously marked by morphological traits and nuclear allozyme loci was demonstrated. This may be evidence of the existence of a sharper geographic boundary between the two haplogroups, as compared to a boundary based on phenotypic and allozyme data. A high proportion of the interpopulation component of variation (65%) estimated by AMOVA indicates a substantial genetic subdivision of European and Siberian populations of the Palearctic spruce complex by mtDNA, which can be putatively explained by natural barriers to gene flow with seeds related, for instance, to the woodless regions of the western Siberian Plain in the Pleistocene and the probable floodplains of large rivers. PMID:27169226

  14. Interspecific hybridization and inbreeding effect in seed from a Eucalyptus grandis x E. urophylla clonal orchard in Brazil

    Directory of Open Access Journals (Sweden)

    Campinhos Eduardo N.

    1998-01-01

    Full Text Available We used allozyme markers to estimate the amount of natural hybridization between Eucalyptus grandis and E. urophylla in a 7.4-hectare commercial hybrid-seed orchard planted in Espírito Santo, Brazil. This orchard was planted in 1982 using a honeycomb design, with each hexagonal plot containing one E. grandis tree surrounded by six E. urophylla trees. There were 267 replicated hexagonal plots in the orchard. Seeds were harvested from the E. grandis clone only. The multilocus outcrossing rate estimated for the E. grandis clone averaged 70.2%, ranging from 33.0 to 99.0% among individual trees. Contaminant pollination, inferred from progeny genotypes containing alleles not present in the seven parental clones, accounted for 14.4% of the hybrid seed. Contaminant pollen was attributed to neighboring eucalyptus stands isolated from the orchard by a 400-m wide belt of native forest. Inbred and hybrid progenies were identified by their allozyme genotypes and transplanted to the field. Field growth of inbred progeny was 30% lower than that of hybrid plants at two and three years of age.

  15. The consequences of monoecy and protogyny for mating in wind-pollinated Carex.

    Science.gov (United States)

    Friedman, Jannice; Barrett, Spencer C H

    2009-01-01

    Monoecy and protogyny are widespread in wind-pollinated plants and have been interpreted as outcrossing mechanisms, though few studies have investigated their function. Carex, a large genus of anemophilous herbs, is predominantly monoecious and many species are protogynous. We investigated whether monoecy and protogyny limit self-pollination in seven Carex species. We conducted field experiments comparing stigmatic pollen loads and seed set between intact and emasculated stems. We tested for self-compatibility and evaluated pollen limitation of seed set by supplemental pollination. Finally, we measured outcrossing rates in open-pollinated and emasculated stems using allozyme markers. Emasculated stems captured significantly less pollen than open-pollinated stems and set less seed. Pollen deposition during the female-only phase for intact stems was only 12% of the total captured. Outcrossing rates for three species indicated high selfing (range t = 0.03-0.39). Allozyme loci in the remaining species were monomorphic also suggesting high selfing. These results demonstrate that neither monoecy nor protogyny is particularly effective at limiting self-fertilization. Selection for the avoidance of selfing is unlikely to maintain monoecy in many Carex species although protogyny may provide limited opportunities for outcrossing. We propose that geitonogamy in self-compatible wind-pollinated species with unisexual flowers may be widespread and provides reproductive assurance.

  16. Numbers and dispersion of repopulating hematopoietic cell clones in radiation chimeras as functions of injected cell dose

    International Nuclear Information System (INIS)

    Lethally irradiated mice were repopulated with low (10(5)), medium (10(6)) or high (10(7)) doses of congenic bone marrow cells. Marrow donors were heterozygous for the X-chromosome-encoded allozyme marker phosphoglycerate kinase (PGK-1). A second allozyme marker, phosphoglucose isomerase (GPI-1), distinguished between donor and radioresistant host cells. Use of these markers allowed the numbers and dispersion of repopulating hematopoietic clones to be estimated by binomial statistics. The number of major repopulating clones was related to the injected cell dose in a linear fashion, the inferred frequency of clonogenic cells in donor bone marrow being about 1:40,000. In high-dose recipients, the clones grew locally, with little or no dispersion between bones. Low-dose recipients, in contrast, carried widely dispersed clones; these tended to become reduced in number with increasing time after repopulation. Most of the (few) bone marrow clones present in low-dose recipients were also present in the thymus. In contrast, only about 10% of bone marrow clones in high-dose recipients were substantially represented in the thymus at any one time--about 16 clones in each lobe

  17. Genetic diversity and origin of Potamogeton anguillanus (Potamogetonaceae) in Lake Biwa, Japan.

    Science.gov (United States)

    Iida, Satoko; Kadono, Yasuro

    2002-02-01

    We analyzed the genetic variation in Potamogeton anguillanus Koidz. and its putative parents, P. malaianus Miq. and P. perfoliatus L., at five allozyme loci of four enzymes to test the hypothesis of a hybrid origin for P. anguillanus, collected in Lake Biwa, Japan. Alleles diagnostic for either P. malaianus or P. perfoliatus were present at four loci. Of 13 single locus phenotypes (SLPs) of P. anguillanus, eight were phenotypes that were expected in F(1) hybrids between P. malaianus and P. perfoliatus. Two SLPs were different from those expected in F(1) hybrids but could have resulted from segregation of parental alleles in later generation hybrids. Each of the remaining three SLPs possessed one allele unique to P. anguillanus. Allozyme analyses thus supported the view that P. anguillanus was derived from hybridization between P. malaianus and P. perfoliatus. It seems likely that the genetic diversity of P. anguillanus found previously originated through multiple hybridizations and sexual processes in P. anguillanus. Other processes such as intragenic recombination, mutation, or hybridization with another lineage are also discussed with reference to the origin of unique alleles. PMID:12884043

  18. Phylogenetic reconstruction of South American felids defined by protein electrophoresis.

    Science.gov (United States)

    Slattery, J P; Johnson, W E; Goldman, D; O'Brien, S J

    1994-09-01

    Phylogenetic associations among six closely related South American felid species were defined by changes in protein-encoding gene loci. We analyzed proteins isolated from skin fibroblasts using two-dimensional electrophoresis and allozymes extracted from blood cells. Genotypes were determined for multiple individuals of ocelot, margay, tigrina, Geoffroy's cat, kodkod, and pampas cat at 548 loci resolved by two-dimensional electrophoresis and 44 allozyme loci. Phenograms were constructed using the methods of Fitch-Margoliash and neighbor-joining on a matrix of Nei's unbiased genetic distances for all pairs of species. Results of a relative-rate test indicate changes in two-dimensional electrophoresis data are constant among all South American felids with respect to a hyena outgroup. Allelic frequencies were transformed to discrete character states for maximum parsimony analysis. Phylogenetic reconstruction indicates a major split occurred approximately 5-6 million years ago, leading to three groups within the ocelot lineage. The earliest divergence led to Leopardus tigrina, followed by a split between an ancestor of an unresolved trichotomy of three species (Oncifelis guigna, O. geoffroyi, and Lynchailuris colocolo) and a recent common ancestor of Leopardus pardalis and L. wiedii. The results suggest that modern South American felids are monophyletic and evolved rapidly after the formation of the Panama land bridge between North and South America. PMID:7932791

  19. The influence of space in genetic-environmental relationships when environmental heterogeneity and seed dispersal occur at similar scale.

    Science.gov (United States)

    Volis, S; Anikster, Y; Olsvig-Whittaker, L; Mendlinger, S

    2004-02-01

    We tested the importance of microenvironmental topographic parameters as predictors of emmer wheat genetic variation using three classes of single-locus (or at most several-loci) genetic markers (allozymes, glutenins, and qualitative traits) and two classes of markers of polygenic inheritance (phenological and morphological traits). Canonical correspondence analysis (CCA) and redundancy analysis (RDA) detected a significant effect of spatially structured environmental variation on genetic differences between plants for allozymes, glutenins, and quantitative morphological and phenological traits. However, after removing a spatial component of variation in partial CCA and partial RDA, the relationship of the remaining environmental variation with these genetic markers could be explained by chance alone, allowing us to rule out microniche topographic specialization in emmer wheat. Topographic autocorrelation exhibited a certain degree of similarity with genetic marker autocorrelation, indicating similar scales of environmental heterogeneity and seed flow. The detected population genetic structure agrees with one expected under isolation by distance as a result of limited gene flow. A negative relationship of genetic similarity with the logarithm of distance between plants was detected for both molecular markers and quantitative traits, which differed in the strength but not the pattern of association.

  20. From isolates to a synthetic laboratory population : maintenance of variability in the nematode Haemonchus contortus

    Directory of Open Access Journals (Sweden)

    Saulai M.

    2000-03-01

    Full Text Available Haemonchus contortus isolates were collected from goats of five locations with different climatic characteristics in Guadeloupe archipelago. They were investigated for morphology, morphometrics and allozyme diversity after passage in immunosuppressed lambs using long acting corticoids. The basic aim of the work was to construct a synthetic strain in laboratory conditions which was representative of the isolates. The isolates were only slightly different although climatic conditions were very different. The resemblance of isolates might be due to the practice of goat exchanges between farms or to their insular origin. However the isolate from a smaller island (Les Saintes was different (mostly on morphometrics from all the others originating from Guadeloupe main island. The first assemblage in laboratory resulting from the installation from a mixture of the five isolates was not very representative, whereas the next generation (synthetic strain resembled all the isolates as shown from allozyme study. Female fecundity and length in established synthetic strain were lower than that recorded in isolates, indicating a decrease in fitness, possibly due to the stability of experimental environment. The representativity of the synthetic strain was good but the strain could still evoluate on further passages and should be evaluated on a large number of generations maintained in laboratory.

  1. Inhibition of human alcohol and aldehyde dehydrogenases by acetaminophen: Assessment of the effects on first-pass metabolism of ethanol.

    Science.gov (United States)

    Lee, Yung-Pin; Liao, Jian-Tong; Cheng, Ya-Wen; Wu, Ting-Lun; Lee, Shou-Lun; Liu, Jong-Kang; Yin, Shih-Jiun

    2013-11-01

    Acetaminophen is one of the most widely used over-the-counter analgesic, antipyretic medications. Use of acetaminophen and alcohol are commonly associated. Previous studies showed that acetaminophen might affect bioavailability of ethanol by inhibiting gastric alcohol dehydrogenase (ADH). However, potential inhibitions by acetaminophen of first-pass metabolism (FPM) of ethanol, catalyzed by the human ADH family and by relevant aldehyde dehydrogenase (ALDH) isozymes, remain undefined. ADH and ALDH both exhibit racially distinct allozymes and tissue-specific distribution of isozymes, and are principal enzymes responsible for ethanol metabolism in humans. In this study, we investigated acetaminophen inhibition of ethanol oxidation with recombinant human ADH1A, ADH1B1, ADH1B2, ADH1B3, ADH1C1, ADH1C2, ADH2, and ADH4, and inhibition of acetaldehyde oxidation with recombinant human ALDH1A1 and ALDH2. The investigations were done at near physiological pH 7.5 and with a cytoplasmic coenzyme concentration of 0.5 mM NAD(+). Acetaminophen acted as a noncompetitive inhibitor for ADH enzymes, with the slope inhibition constants (Kis) ranging from 0.90 mM (ADH2) to 20 mM (ADH1A), and the intercept inhibition constants (Kii) ranging from 1.4 mM (ADH1C allozymes) to 19 mM (ADH1A). Acetaminophen exhibited noncompetitive inhibition for ALDH2 (Kis = 3.0 mM and Kii = 2.2 mM), but competitive inhibition for ALDH1A1 (Kis = 0.96 mM). The metabolic interactions between acetaminophen and ethanol/acetaldehyde were assessed by computer simulation using inhibition equations and the determined kinetic constants. At therapeutic to subtoxic plasma levels of acetaminophen (i.e., 0.2-0.5 mM) and physiologically relevant concentrations of ethanol (10 mM) and acetaldehyde (10 μm) in target tissues, acetaminophen could inhibit ADH1C allozymes (12-26%) and ADH2 (14-28%) in the liver and small intestine, ADH4 (15-31%) in the stomach, and ALDH1A1 (16-33%) and ALDH2 (8.3-19%) in all 3 tissues. The

  2. Landscape-Level and Fine-Scale Genetic Structure of the Neo tropical Tree Protium spruceanum (Burseraceae)

    International Nuclear Information System (INIS)

    Knowledge of genetic structure at different scales and correlation with the current landscape is fundamental for evaluating the importance of evolutionary processes and identifying conservation units. Here, we used allozyme loci to examine the spatial genetic structure (SGS) of 230 individuals of Protium spruceanum, a native canopy-emergent in five fragments of Brazilian Atlantic forest (1 to 11.8 ha), and four ecological corridors (460 to 1000 m length). Wright's FST statistic and Mantel tests revealed little evidence of significant genetic structure at the landscape-scale (FST=0.027; rM=-0.051, P=.539). At fine-scale SGS, low levels of relatedness within fragments and corridors (Sp=0.008, P>.05) were observed. Differences in the levels and distribution of the SGS at both spatial scales are discussed in relation to biological and conservation strategies of corridors and forest fragments.

  3. Genetic relationship between the Echinococcus granulosus sensu stricto cysts located in lung and liver of hosts.

    Science.gov (United States)

    Oudni-M'rad, Myriam; Cabaret, Jacques; M'rad, Selim; Chaâbane-Banaoues, Raja; Mekki, Mongi; Zmantar, Sofien; Nouri, Abdellatif; Mezhoud, Habib; Babba, Hamouda

    2016-10-01

    G1 genotype of Echinococcus granulosus sensu stricto is the major cause of hydatidosis in Northern Africa, Tunisia included. The genetic relationship between lung and liver localization were studied in ovine, bovine and human hydatid cysts in Tunisia. Allozyme variation and single strand conformation polymorphism were used for genetic differentiation. The first cause of genetic differentiation was the host species and the second was the localization (lung or liver). The reticulated genetic relationship between the liver or the lung human isolates and isolates from bovine lung, is indicative of recombination (sexual reproduction) or lateral genetic transfer. The idea of two specialized populations (one for the lung one for the liver) that are more or less successful according to host susceptibility is thus proposed. PMID:27456279

  4. Contrasting patterns of spatial genetic differentiation in two east asian five-needle pine species, Pinus koraiensis and P. armandii

    Directory of Open Access Journals (Sweden)

    Belokon M.-M.

    2008-09-01

    Full Text Available Two species of East Asian five-needle pines of the section Strobus, Korean pine, Pinus koraiensis Sieb. et Zucc. and Armand's pine, Pinus armandii Franch are traditionally placed in two different subsections, Cembrae and Strobi, respectively.However, data on similarity of these pines in needle anatomy and pollen structure are reported. By means of starch gel electrophoresis we studied allozyme variation within populations of these species and between the two species. Among 30 studied loci we selected 17 polymorphic loci with reliable interpretation of allele correspondencebetween species. Allozyme patterns were similar in both species with respect to number of loci and predominant alleles at most loci. Intra-specific differentiation among 12 populations of Pinus koraiensis from Russia, Northeast China and South Korea was low, FST (proportion of among population variation in total variation was as low as 0.019, DN (Nei's genetic distance varied between 0.001 and 0.006. This genetic uniformity can be explained by a common gene pool of this species within virtually continuous range under similar ecological conditions. Common vectors of selection, natural gene flow through pollen and seed dispersal as well as mixing of genetic material between regions by humans (at least in Russian forestry practice are putative factors responsible for low differentiation in Korean stone pine. We estimated the same parameters in Pinus armandii from continental China (Guizhou, Shaanxi, Shenyan where its range is highly fragmented, and found differentiation in this species to be much more pronounced (FST = 0.067, DN = 0.011-0.029. By adding a sample from Taiwan both FST (0.338 and DN (up to 0.232 were substantially higher indicating high level of differences between continental and Taiwanese P. armandii, putatively due to longer isolation time. Maximal contribution was fromloci Adh-1, Got-3, Mdh-1, 6-Pgd-3, Pgm-2 and Skdh-2. Differences were mainly caused by allelic

  5. Contrasting patterns of spatial genetic differentiation in two east asian five-needle pine species, Pinus koraiensis and P. armandii

    Directory of Open Access Journals (Sweden)

    M.M. Belokon

    2013-12-01

    Full Text Available Two species of East Asian five-needle pines of the section Strobus, Korean pine, Pinus koraiensis Sieb. et Zucc. and Armand's pine, Pinus armandii Franch are traditionally placed in two different subsections, Cembrae and Strobi, respectively. However, data on similarity of these pines in needle anatomy and pollen structure are reported. By means of starch gel electrophoresis we studied allozyme variation within populations of these species and between the two species. Among 30 studied loci we selected 17 polymorphic loci with reliable interpretation of allele correspondence between species. Allozyme patterns were similar in both species with respect to number of loci and predominant alleles at most loci. Intra-specific differentiation among 12 populations of Pinus koraiensis from Russia, Northeast China and South Korea was low, FST (proportion of among population variation in total variation was as low as 0.019, DN (Nei's genetic distance varied between 0.001 and 0.006. This genetic uniformity can be explained by a common gene pool of this species within virtually continuous range under similar ecological conditions. Common vectors of selection, natural gene flow through pollen and seed dispersal as well as mixing of genetic material between regions by humans (at least in Russian forestry practice are putative factors responsible for low differentiation in Korean stone pine. We estimated the same parameters in Pinus armandii from continental China (Guizhou, Shaanxi, Shenyan where its range is highly fragmented, and found differentiation in this species to be much more pronounced (FST = 0.067, DN = 0.011-0.029. By adding a sample from Taiwan both FST (0.338 and DN (up to 0.232 were substantially higher indicating high level of differences between continental and Taiwanese P. armandii, putatively due to longer isolation time. Maximal contribution was from loci Adh-1, Got-3, Mdh-1, 6-Pgd-3, Pgm-2 and Skdh-2. Differences were mainly caused by

  6. Genetic structure of the sea-bob shrimp (Xiphopenaeus kroyeri Heller, 1862; Decapoda, Penaeidae along the Brazilian southeastern coast

    Directory of Open Access Journals (Sweden)

    Carolina Moreira Voloch

    2005-01-01

    Full Text Available The sea-bob shrimp, Xiphopenaeus kroyeri, is one of the most important economic marine resources along the entire Brazilian coast. Nevertheless, despite its economic importance, no studies have examined the population genetics of this species. In this paper, we used ten allozyme loci to study the pattern of genetic structuring in X. kroyeri along the southeastern Brazilian coast. Seven of the ten analyzed loci were polymorphic, yielding observed heterozygosity values higher than those reported for other penaeid shrimps. The population from São Paulo was significantly different from the other two populations (Rio de Janeiro and Espírito Santo, which, in turn, seem to form a single panmitic unit. Therefore, our results clearly indicate that conservation policies for this species should consider the São Paulo population as an independent stock from those of Rio de Janeiro and Espírito Santo.

  7. Genetic diversity and gene flow in the morphologically variable, rare endemics Begonia dregei and Begonia homonyma (Begoniaceae).

    Science.gov (United States)

    Matolweni, L O; Balkwill, K; McLellan, T

    2000-03-01

    Begonia dregei and B. homonyma (Begoniaceae), rare plants endemic to coastal forests of eastern South Africa, are two closely related species with high levels of variation among populations in the shape of leaves. Distribution of genetic variation and genetic relatedness were investigated in 12 populations of B. dregei and seven of B. homonyma using polyacrylamide gel electrophoresis. Twelve of the 15 enzyme loci examined were polymorphic, but only seven loci were polymorphic within at least one population. Genetic diversity measures indicated that the among-population gene differentiation represents >90% of the total genetic component in both species considered individually or combined. This indicated restricted gene flow, consistent with the limited dispersal abilities of Begonia generally and the ancient separation of isolated forest patches. Genetic distances among populations are much higher than usually found within species. Allozyme data provide no support for the recognition of B. dregei and B. homonyma as distinct species.

  8. Genetic variability in the Florida manatee (Trichechus manatus)

    Science.gov (United States)

    McClenaghan, Leroy R., Jr.; O'Shea, Thomas J.

    1988-01-01

    Tissue was obtained from 59 manatee (Trichechus manatus) carcasses salvaged from 20 counties in Florida. Allozyme phenotypes at 24 structural loci were determined by gel electrophoresis. Averages for the proportion of polymorphic loci and mean heterozygosity were 0.300 (range, 0.167-0.417) and 0.050 (range, 0.028-0.063), respectively. These estimates are equivalent to or higher than those generally reported for other species of marine mammals and do not support the hypothesis that body size and heterozygosity in mammals are related inversely. Among-region gene diversity accounted for only 4% of the total diversity. High rates of gene flow probably account for genetic homogeneity across regions. An F-statistic analysis revealed a general tendency toward excess homozygosity within regions. Management efforts to prevent future reductions in population size that would erode existing genic diversity should continue.

  9. Cytonuclear disequilibrium in chrysochus hybrids is not due to patterns of mate choice.

    Science.gov (United States)

    Monsen, Kirsten J; Honchak, Barbara M; Locke, Stefanie E; Peterson, Merrill A

    2007-01-01

    We investigated patterns of cytonuclear disequilibrium between nuclear allozyme loci and partial mitochondrial COI and COII restriction fragment length polymorphism patterns within a population of hybridizing chrysomelid beetles and assessed to what degree the genotype frequencies of F1 hybrids were consistent with patterns of mate choice or endosymbiont infection. We document that in this population, > or = 50% of the heterospecific pairs at a given time are composed of Chrysochus auratus females and Chrysochus cobaltinus males, suggesting that at least half of the F1 hybrids should possess the C. auratus mitochondrial genotype. However, we found that the majority (89%) of F1 hybrids possessed C. cobaltinus mtDNA (P dangers inherent in attributing patterns of cytonuclear disequilibrium to assortative mating.

  10. Synchronous polyandry and multiple paternity in the frog Crinia georgiana (Anura: Myobatrachidae).

    Science.gov (United States)

    Roberts; Standish; Byrne; Doughty

    1999-03-01

    Multiple paternity has rarely been reported in anuran amphibians, with only three previous documented examples. For the Australian frog Crinia georgiana, we observed synchronous polyandry in an average of 44% of matings observed at four field sites. This suggests matings involving more than one male are common in this species. One to eight males were observed in amplectant groups with second males amplexed ventrally. Genetic analyses, using allozyme electrophoresis, of offspring from two matings indicated that at least two of three possible males fathered offspring. Third males were unlikely to have shared paternity, explained by their inappropriate position during amplexus. Multiple paternity may be more common in frogs than has been reported. Copyright 1999 The Association for the Study of Animal Behaviour.

  11. [Genetic structure of the populations of Pallas pine (Pinus pallasiana D. Don) reforested in extreme conditions].

    Science.gov (United States)

    Korshikov, I I; Krasnoshtan, O V

    2010-01-01

    The paper reports on an intensive reforestation of Pallas pine (Pinus pallasiana D. Don) in post-fire sites in the native Mountainous Crimean populations and around the previously planted seed-producing trees in ore-mining dumps of the Krivoy Rog region. Self-sown progeny growing in the dump is characterized by a better growth and comes to the reproductive development phase earlier compared to that one growing in post-fire forest. Allele variability at 20 allozyme loci is less in self-sown progeny than in the native populations whereas its heterozygosity level is similar. Genetic distance (D(N)) among self-sown progenies in post-fire sites and ore-mining dump is comparable to that of the natural populations. PMID:20608157

  12. Detection of Genetic Variation and Genetic Diversity in Two Indian Mudskipper Species (Boleophthalmus boddarti, B. dussumieri using RAPD Marker

    Directory of Open Access Journals (Sweden)

    Vellaichamy RAMANADEVI

    2013-05-01

    Full Text Available Due to the environmental changes and habitat destruction the mudskipper fish population is decreasing in recent years. To predict the fish population structure, frequent manual survey and molecular methods are widely used. Molecular markers such as RAPD, microsatellite, allozyme, D-loop haplotype are frequently adopted to assess the population structure of an organism. In this study ten- arbitrary primers were screened to estimate the genetic relationships and diversity of two mudskipper species (Boleophthalmus boddarti and B. dussumieri in Vellar estuary, Tamilnadu, India. By this RAPD marker study, the genetic diversity (H in B. boddarti was more (0.0116 ± 0.0066 than in B. dussumieri (0.0056 ± 0.0024 in Vellar estuary (India. The genetic distance between B. boddarti and B. dussumieri was 1.7943. By observing the species specific bands and the phylogenetic analysis it is revealed that these two species clearly deviated into separate clusters emphasizing the distinct species status.

  13. Mating system and seed variation of Acacia hybrid (A. mangium × A. auriculiformis)

    Indian Academy of Sciences (India)

    Chin-Hong Ng; Soon-Leong Lee; Kevin Kit-Siong Ng; Norwati Muhammad; Wickneswari Ratnam

    2009-04-01

    The mating system and seed variation of Acacia hybrid (A. mangium × A. auriculiformis) were studied using allozymes and random amplified polymorphic DNA (RAPD) markers, respectively. Multi-locus outcrossing rate estimations indicated that the hybrid was predominantly outcrossed (mean±s.e. $t_{m} = 0.86\\pm 0.01$). Seed variation was investigated using 35 polymorphic RAPD fragments. An analysis of molecular variance (AMOVA) revealed the highest genetic variation among seeds within a pod (66%–70%), followed by among pods within inflorescence (29%–37%), and the least variation among inflorescences within tree (< 1%). In addition, two to four RAPD profiles could be detected among seeds within pod. Therefore, the results suggest that a maximum of four seeds per pod could be sampled for the establishment of a mapping population for further studies.

  14. GENETIC CONSEQUENCES OF INTRODUCED Gouramy Helostoma Temminckii (Pisces: Helostomatidae) IN BRUNEI'S WETLAND

    Institute of Scientific and Technical Information of China (English)

    H.S.Zohrah; P.H.C.Fauzani; C. S. Jen; O. Norsuzieyanti

    2003-01-01

    Kissing gouramy (Helostoma temminckii) was introduced into Tasek Merimbun in the 1980's. We studied their genetic profile using allozyme electrophoresis and found that all loci were monomorphic. The loss of heterozygotes may suggest that the gouramy are inbreds. They must have reproduced by repeated sib-mating over the years. The severe drought in Tasek Merimbun may have aggravated the genetic erosion further. The genetic variability of kissing gouramy in terms of % polymorphic loci, mean number of alleles per loci and observed heterozygosity level were lower than cyprinids in the same lake and kissing gouramy from the wild. We also note that kissing gouramy is a fast grower and may threaten the livelihood of indigenous fishes in the lake.

  15. Haploid Origin of Cork Oak Anther Embryos Detected by Enzyme and RAPD Gene Markers.

    Science.gov (United States)

    Bueno; Agundez; Gomez; Carrascosa; Manzanera

    2000-05-01

    In vitro-induced cork oak (Quercus suber L.) embryos from anther cultures proved to be of haploid origin both by enzyme and RAPD gene marker analysis. The problem considered was to ascertain if embryo cultures originated either from a single haploid cell, from a microspore, or from multiple haploid cells. Therefore, a heterozygotic gene was searched for in the parent tree. The gene coding for shikimate dehydrogenase (SKDH1) proved to be heterozygous in the parental tree, and subsequently, these allozymes were screened for the embryos induced in anther cultures from the same tree. Only haploid embryos were found, confirming the microspore origin. Different genotypes were not identified inside each anther by isozyme analysis, probably because of selective pressure for one embryo early in development, but both parental SKDH1 alleles were found in the embryos of different anthers. The banding patterns detected by RAPD markers permitted the identification of multiple microspore origins inside each anther.

  16. Standard methods for characterising subspecies and ecotypes of Apis mellifera

    DEFF Research Database (Denmark)

    Meixner, Marina D.; Pinto, Maria Alice; Bouga, Maria;

    2013-01-01

    The natural diversity of honey bees in Europe is eroding fast. A multitude of reasons lead to a loss of both genetic diversity and specific adaptations to local conditions. To preserve locally adapted bees through breeding efforts and to maintain regional strains in conservation areas......, these valuable populations need to be identified. In this paper, we give an overview of methods that are currently available and used for recognition of honey bee subspecies and ecotypes, or that can be utilised to verify the genetic origin of colonies for breeding purposes. Beyond summarising details...... of morphometric, allozyme and DNA methods currently in use, we report recommendations with regard to strategies for sampling, and suggest methods for statistical data analysis. In particular, we emphasise the importance of reference data and consistency of methods between laboratories to yield comparable results....

  17. From Africa to Europe and back: refugia and range shifts cause high genetic differentiation in the Marbled White butterfly Melanargia galathea

    Directory of Open Access Journals (Sweden)

    Rödder Dennis

    2011-07-01

    Full Text Available Abstract Background The glacial-interglacial oscillations caused severe range modifications of biota. Thermophilic species became extinct in the North and survived in southern retreats, e.g. the Mediterranean Basin. These repeated extinction and (recolonisation events led to long-term isolation and intermixing of populations and thus resulted in strong genetic imprints in many European species therefore being composed of several genetic lineages. To better understand these cycles of repeated expansion and retraction, we selected the Marbled White butterfly Melanargia galathea. Fourty-one populations scattered over Europe and the Maghreb and one population of the sibling taxon M. lachesis were analysed using allozyme electrophoresis. Results We obtained seven distinct lineages applying neighbour joining and STRUCTURE analyses: (i Morocco, (ii Tunisia, (iii Sicily, (iv Italy and southern France, (v eastern Balkans extending to Central Europe, (vi western Balkans with western Carpathian Basin as well as (vii south-western Alps. The hierarchy of these splits is well matching the chronology of glacial and interglacial cycles since the Günz ice age starting with an initial split between the galathea group in North Africa and the lachesis group in Iberia. These genetic structures were compared with past distribution patterns during the last glacial stage calculated with distribution models. Conclusions Both methods suggest climatically suitable areas in the Maghreb and the southern European peninsulas with distinct refugia during the last glacial period and underpin strong range expansions to the North during the Postglacial. However, the allozyme patterns reveal biogeographical structures not detected by distribution modelling as two distinct refugia in the Maghreb, two or more distinct refugia at the Balkans and a close link between the eastern Maghreb and Sicily. Furthermore, the genetically highly diverse western Maghreb might have acted as source

  18. Can diversifying selection be distinguished from history in geographic clines? A population genomic study of killifish (Fundulus heteroclitus.

    Directory of Open Access Journals (Sweden)

    Allan E Strand

    Full Text Available A common geographical pattern of genetic variation is the one-dimensional cline. Clines may be maintained by diversifying selection across a geographical gradient but can also reflect historical processes such as allopatry followed by secondary contact. To identify loci that may be undergoing diversifying selection, we examined the distribution of geographical variation patterns across the range of the killifish (Fundulus heteroclitus in 310 loci, including microsatellites, allozymes, and single nucleotide polymorphisms. We employed two approaches to detect loci under strong diversifying selection. First, we developed an automated method to identify clinal variation on a per-locus basis and examined the distribution of clines to detect those that exhibited signifcantly steeper slopes. Second, we employed a classic [Formula: see text]-outlier method as a complementary approach. We also assessed performance of these techniques using simulations. Overall, latitudinal clines were detected in nearly half of all loci genotyped (i.e., all eight microsatellite loci, 12 of 16 allozyme loci and 44% of the 285 SNPs. With the exception of few outlier loci (notably mtDNA and malate dehydrogenase, the positions and slopes of Fundulus clines were statistically indistinguishable. The high frequency of latitudinal clines across the genome indicates that secondary contact plays a central role in the historical demography of this species. Our simulation results indicate that accurately detecting diversifying selection using genome scans is extremely difficult in species with a strong signal of secondary contact; neutral evolution under this history produces clines as steep as those expected under selection. Based on these results, we propose that demographic history can explain all clinal patterns observed in F. heteroclitus without invoking natural selection to either establish or maintain the pattern we observe today.

  19. Analysis of mating system in two Pinus cembra L. populations of the Ukrainian Carpathians

    Directory of Open Access Journals (Sweden)

    Dmitri V. Politov

    2008-09-01

    Full Text Available In natural pine populations, a mixed mating system is typical,characterized by the proportions of selfed and outcrossed seeds. Swiss stone pine(Pinus cembra L. is one of the least studied European conifers in this respect. The mating system of six polymorphic allozyme loci were studied in haploid megagametophytes and diploid open-pollinated embryos in two stands located in theEast Carpathians. In the 'Gorgany' population (24 trees, 198 seeds the mean singlelocus estimated outcrossing rate (ts was 0.731, and the multilocus estimate (tm was 0.773. In the 'Yayko' population the outcrossing rate was lower (27 trees, 213 seeds, ts=0.645, tm=0.700, suggesting 23-30% of seeds are self-pollinated. Correlation ofoutcrossing rate estimates among loci was less than 1, (0.300 in 'Gorgany' and 0.469 in 'Yayko' indicating biparental inbreeding occurred. Differences between tm and ts (0.042 in 'Gorgany' and 0.056 in 'Yayko' can also be influenced by consanguineous mating, indicated by the presence of spatial and genetic family structure. In small isolated populations of Pinus cembra, which are typical for the Carpathian part of the species' range, inbreeding depression may negatively affect seed quality. The high proportion of selfed seeds observed here can be expected in any seedlot of this species and should be taken into account while planning gene conservation orreforestation measures. Maternal trees in these populations showed no heterozygote deficiency at these allozyme loci, and instead showed increased proportions of heterozygotes (inbreeding coefficient FIS = -0.200 in 'Gorgany' and -0.142 in 'Yayko'. Balancing selection may explain heterozygosity levels up to and above equilibrium proportions.

  20. High genetic diversity and population structure in the endangered Canarian endemic Ruta oreojasme (Rutaceae).

    Science.gov (United States)

    Meloni, Marilena; Reid, Andrea; Caujapé-Castells, Juli; Soto, Moisés; Fernández-Palacios, José María; Conti, Elena

    2015-10-01

    Insular species are expected to have low genetic diversity, for their populations are often small and isolated, and characterized by restricted gene flow and increased incidence of inbreeding. However, empirical results do not always match this expectation. For example, population genetic analyses of several Canarian endemics, based mainly on allozymes, show levels of genetic diversity exceptionally high for insular species. To investigate whether genetic variation in rare species endemic to Canary Islands is low, as predicted by theoretical expectations, or high, as documented in some previous studies, we analysed genetic diversity of the endangered Ruta oreojasme, a rare endemic of the island of Gran Canaria, using microsatellite markers, which are more variable than allozymes. Our analyses identified very high levels of genetic diversity (A = 7.625, P = 0.984, H o = 0.558, H e = 0.687) for R. oreojasme. Even though the distribution of the species is restricted to the South of Gran Canaria, only one population shows low genetic diversity, isolation and signs of a recent bottleneck/founder event. Some intrinsic characteristics of R. oreojasme (hermaphroditism, proterandry and polyploidy), the relative climatic stability of the Canarian archipelago during Quaternary glacials/interglacials, the size of most populations (thousands of individuals), its age, and the relative proximity of the archipelago to the mainland might have contributed to the high diversity that characterises this endemic. As expected, given the marked topographic complexity of Gran Canaria, we found marked genetic structure in R. oreojasme populations. Our results support the observation that Canarian endemics are characterised by unexpectedly high genetic diversity and provides important insights for potential applications to the conservation of R. oreojasme.

  1. No more time to stay 'single' in the detection of Anisakis pegreffii, A. simplex (s. s.) and hybridization events between them: a multi-marker nuclear genotyping approach.

    Science.gov (United States)

    Mattiucci, S; Acerra, V; Paoletti, M; Cipriani, P; Levsen, A; Webb, S C; Canestrelli, D; Nascetti, G

    2016-07-01

    A multi-marker nuclear genotyping approach was performed on larval and adult specimens of Anisakis spp. (N = 689) collected from fish and cetaceans in allopatric and sympatric areas of the two species Anisakis pegreffii and Anisakis simplex (s. s.), in order to: (1) identify specimens belonging to the parental taxa by using nuclear markers (allozymes loci) and sequence analysis of a new diagnostic nuclear DNA locus (i.e. partial sequence of the EF1 α-1 nDNA region) and (2) recognize hybrid categories. According to the Bayesian clustering algorithms, based on those markers, most of the individuals (N = 678) were identified as the parental species [i.e. A. pegreffii or A. simplex (s. s.)], whereas a smaller portion (N = 11) were recognized as F1 hybrids. Discordant results were obtained when using the polymerase chain reaction-restriction fragment length polymorphisms (PCR-RFLPs) of the internal transcribed spacer (ITS) ribosomal DNA (rDNA) on the same specimens, which indicated the occurrence of a large number of 'hybrids' both in sympatry and allopatry. These findings raise the question of possible misidentification of specimens belonging to the two parental Anisakis and their hybrid categories derived from the application of that single marker (i.e. PCR-RFLPs analysis of the ITS of rDNA). Finally, Bayesian clustering, using allozymes and EF1 α-1 nDNA markers, has demonstrated that hybridization between A. pegreffii and A. simplex (s. s.) is a contemporary phenomenon in sympatric areas, while no introgressive hybridization takes place between the two species.

  2. 微卫星DNA多态性分析在常用近交系小鼠遗传监测中的应用研究%Microsatellite DNA Polymorphisms in Inbred Strain Mice and Selection as Genetic Monitoring Markers

    Institute of Scientific and Technical Information of China (English)

    欧阳兆和; 陈振文; 李瑞生; 战大伟

    2003-01-01

    The aim of genetic monitoring is to checking the genetic contamination within inbred starains, which insures that the strains according with the require of colony . At present the methods based on allozyme biochemistry are the National Standard instructed. methods that using microsatellite DNA would be more useful for genetic monitoring than methods based on allozyme biochemistry because the genome itself is being tested rather than a protein product and a larger portion of the genome can be sampled, and easy to distinguish. methods that using microsatellite DNA had abundant microsatellite loci(over 7300, before 1999) can be identified. Applying enough microsatellite loci will present abundant straps and well polymorphism, which can reflection inherit and variation of roundly genene. In addition, this novel approach allows the rapid, sensitive, convenientand accuracy, even individual identificaton. So we should select microsatellite DNA which is polymorphisms as genetic monitoring markers to determining the strains' origin and genetic background of inbred mice.Untill now Only feasibility has been reported, and in which microsatellite DNA loci have not enough polymorphisms to distinguish genetic differences. Articles on standards and practicality have not been founded in our country. With the optimization of components of reaction buffer and amplificaton parameter, PCR for amplification microsatellite DNA was finally set up. Using the techniques microsatellite DNA can amplified efficaciously. The final concentrations of Mg2+ was 1 . 5-3.0 mmol/L, annealing temperature was 50 ℃-65 ℃. The condition for the PCR amplify were , 94 ℃ for 3min, 30cycles of 94℃ for 30s, 50℃-65℃ for 30s,72℃ for 1min,finally at 72℃ for 1min,then store at 4℃.

  3. No more time to stay 'single' in the detection of Anisakis pegreffii, A. simplex (s. s.) and hybridization events between them: a multi-marker nuclear genotyping approach.

    Science.gov (United States)

    Mattiucci, S; Acerra, V; Paoletti, M; Cipriani, P; Levsen, A; Webb, S C; Canestrelli, D; Nascetti, G

    2016-07-01

    A multi-marker nuclear genotyping approach was performed on larval and adult specimens of Anisakis spp. (N = 689) collected from fish and cetaceans in allopatric and sympatric areas of the two species Anisakis pegreffii and Anisakis simplex (s. s.), in order to: (1) identify specimens belonging to the parental taxa by using nuclear markers (allozymes loci) and sequence analysis of a new diagnostic nuclear DNA locus (i.e. partial sequence of the EF1 α-1 nDNA region) and (2) recognize hybrid categories. According to the Bayesian clustering algorithms, based on those markers, most of the individuals (N = 678) were identified as the parental species [i.e. A. pegreffii or A. simplex (s. s.)], whereas a smaller portion (N = 11) were recognized as F1 hybrids. Discordant results were obtained when using the polymerase chain reaction-restriction fragment length polymorphisms (PCR-RFLPs) of the internal transcribed spacer (ITS) ribosomal DNA (rDNA) on the same specimens, which indicated the occurrence of a large number of 'hybrids' both in sympatry and allopatry. These findings raise the question of possible misidentification of specimens belonging to the two parental Anisakis and their hybrid categories derived from the application of that single marker (i.e. PCR-RFLPs analysis of the ITS of rDNA). Finally, Bayesian clustering, using allozymes and EF1 α-1 nDNA markers, has demonstrated that hybridization between A. pegreffii and A. simplex (s. s.) is a contemporary phenomenon in sympatric areas, while no introgressive hybridization takes place between the two species. PMID:27046418

  4. Reconciling patterns of inter-ocean molecular variance from four classes of molecular markers in blue marlin (Makaira nigricans).

    Science.gov (United States)

    Buonaccorsi, V P; McDowell, J R; Graves, J E

    2001-05-01

    Different classes of molecular markers occasionally yield discordant views of population structure within a species. Here, we examine the distribution of molecular variance from 14 polymorphic loci comprising four classes of molecular markers within approximately 400 blue marlin individuals (Makaira nigricans). Samples were collected from the Atlantic and Pacific Oceans over 5 years. Data from five hypervariable tetranucleotide microsatellite loci and restriction fragment length polymorphism (RFLP) analysis of whole molecule mitochondrial DNA (mtDNA) were reported and compared with previous analyses of allozyme and single-copy nuclear DNA (scnDNA) loci. Temporal variance in allele frequencies was nonsignificant in nearly all cases. Mitochondrial and microsatellite loci revealed striking phylogeographic partitioning among Atlantic and Pacific Ocean samples. A large cluster of alleles was present almost exclusively in Atlantic individuals at one microsatellite locus and for mtDNA, suggesting that, if gene flow occurs, it is likely to be unidirectional from Pacific to Atlantic oceans. Mitochondrial DNA inter-ocean divergence (FST) was almost four times greater than microsatellite or combined nuclear divergences including allozyme and scnDNA markers. Estimates of Neu varied by five orders of magnitude among marker classes. Using mathematical and computer simulation approaches, we show that substantially different distributions of FST are expected from marker classes that differ in mode of inheritance and rate of mutation, without influence of natural selection or sex-biased dispersal. Furthermore, divergent FST values can be reconciled by quantifying the balance between genetic drift, mutation and migration. These results illustrate the usefulness of a mitochondrial analysis of population history, and relative precision of nuclear estimates of gene flow based on a mean of several loci.

  5. Genetic analysis of Apis mellifera macedonica (type rodopica populations selectively reared for purposive production of honey bee queens in Bulgaria

    Directory of Open Access Journals (Sweden)

    VIDA H. GEORGIEVA

    2016-04-01

    Full Text Available The genetic polymorphism in selectively reared in Bulgaria, local honey bee populations of Apis mellifera macedonica subspecies (type rodopica, has been studied, using analysis of six enzyme systems (MDH-1, ME, EST-3, ALP, PGM and HK corresponding to 6 loci. Totally 458 worker bees from 12 bee breeding bases for artificially inseminated queens were used for this study. All these stations are part of the National Bee Breeding Association which officially implements a National Program for sustainable beekeeping in Bulgaria. All of the six loci were found to be polymorphic. Only EST-3 locus was established as fixed in one of the investigated populations. Polymorphism with three alleles was ascertained for MDH, ME, ALP, PGM and HK loci and with five alleles for EST-3 locus. The most common alleles in almost all of the populations were MDH-1 100, ME 100, EST-3 100, PGM 100 and HK 100. Two private alleles (frequency < 0.05 were found for two of the populations. The calculated level of polymorphism was 88.33% in only one of the populations and 100% - in all others. The observed and expected heterozygosities (Ho and He ranged from 0.157 to 0.250 and from 0.206 to 0.272, respectively. The estimated mean FST value from allozyme data was 0.035. On the bases of the allele frequencies of the studied allozyme loci the Nei's (1972 genetic distance was estimated. It ranged between 0.002 and 0.060 among the populations studied.

  6. Non-equilibrium estimates of gene flow inferred from nuclear genealogies suggest that Iberian and North African wall lizards (Podarcis spp. are an assemblage of incipient species

    Directory of Open Access Journals (Sweden)

    Harris D James

    2008-02-01

    Full Text Available Abstract Background The study of recently-diverged species offers significant challenges both in the definition of evolutionary entities and in the estimation of gene flow among them. Iberian and North African wall lizards (Podarcis constitute a cryptic species complex for which previous assessments of mitochondrial DNA (mtDNA and allozyme variation are concordant in describing the existence of several highly differentiated evolutionary units. However, these studies report important differences suggesting the occurrence of gene flow among forms. Here we study sequence variation in two nuclear introns, β-fibint7 and 6-Pgdint7, to further investigate overall evolutionary dynamics and test hypotheses related to species delimitation within this complex. Results Both nuclear gene genealogies fail to define species as monophyletic. To discriminate between the effects of incomplete lineage sorting and gene flow in setting this pattern, we estimated migration rates among species using both FST-based estimators of gene flow, which assume migration-drift equilibrium, and a coalescent approach based on a model of divergence with gene flow. Equilibrium estimates of gene flow suggest widespread introgression between species, but coalescent estimates describe virtually zero admixture between most (but not all species pairs. This suggests that although gene flow among forms may have occurred the main cause for species polyphyly is incomplete lineage sorting, implying that most forms have been isolated since their divergence. This observation is therefore in accordance with previous reports of strong differentiation based on mtDNA and allozyme data. Conclusion These results corroborate most forms of Iberian and North African Podarcis as differentiated, although incipient, species, supporting a gradual view of speciation, according to which species may persist as distinct despite some permeability to genetic exchange and without having clearly definable genetic

  7. Impacts of forest fragmentation on the mating system and genetic diversity of white spruce (Picea glauca) at the landscape level.

    Science.gov (United States)

    O'Connell, L M; Mosseler, A; Rajora, O P

    2006-12-01

    We studied the mating system of white spruce (Picea glauca) in a landscape fragmented by agriculture in northern Ontario, Canada. We sampled 23 stands that ranged in size from 1 to >500 trees isolated by 250-3000 m from the nearest other stand. Six polymorphic allozyme loci from four enzyme systems were used to genotype approximately 10 000 embryos from 104 families. We detected no allele frequency heterogeneity in the pollen pool among stands or families (Phi(FT)=-0.025). Overall, estimates of outcrossing were high (t(m)=94% and mean t(s)=91%) but significantly different from unity. Bi-parental inbreeding (t(m)-t(s)=3.2%) was low but significantly different from zero. Allozyme-based outcrossing estimates did not differ significantly among three stand-size classes (SSCs): small (large (> or =100 trees). The number of effective pollen donors was high in all SSCs, but was significantly lower in small stands (N(ep)=62.5) than in medium-sized and large stands (both N(ep)=143). The primary selfing rate was significantly higher in medium stands than in large stands. We found no significant difference in genetic diversity measures in the filial (seed) population among SSCs. Overall, these results indicate that white spruce stands in this fragmented landscape are resistant to genetic diversity losses, primarily through high pollen-mediated gene-flow and early selection against inbred embryos. We discuss the importance of using seed data, in conjunction with genetic data, to evaluate the impacts of fragmentation on natural populations.

  8. Advances in genetics and breeding in abalone:a review%鲍遗传育种研究进展

    Institute of Scientific and Technical Information of China (English)

    蔡明夷; 柯才焕; 周时强; 王桂忠

    2004-01-01

    Abalones are important farming species with a high economic value. They have already been farmed for more than 50 years. As problems and new requirements rose continuously in culture industry of abalone, studies on genetic and breeding techniques are needed to improve characteristics and to gain new traits. This review concentrates on advances in genetics and breeding techniques in abalone. As for genetic studies, karyological analyses, allozyme, DNA markers and genetic diversity were reviewed. So far, karyological analyses in abalone have been performed in 12 species that can be divided into three groups according to the chromosome number. In some economically important species, loci of allozymes and. microsatellites have been isolated and applied to investigate the genetic structure of natural and hatchery populations and to identify the result of chromosome set manipulation, but the related reports are only a few yet. The resultsof investigation with DNA markers and allozymes showed that the genetic structure of natural populations presents two characteristics: excessive homozygosity and subdivision. Advances of various breeding techniques, including introduction, selection,hybridization, polyploidy, gynogenesis and gene manipulation, were reviewed in the other part. Although Haliotis discus discus, introduced from Japan, has become one of the most important culture species in China, the economic, social and environmental effects of introduction have been rarely studied. Selection is one of the most important and basic breeding techniques, but the studies on selection are only a few and preliminary, referring to the relations between genetic characteristics and the traits of growth and resistance, genetic diversity and heritability of quantitative traits, and the effect of selection. Interspecific hybridization was the first breeding program carded out in abalone. Experimental hybridization have been carded out for about 20 crosses. Heterosis,such as faster

  9. Molecular phylogenetics of the avian genus Pipilo and a biogeographic argument for taxonomic uncertainty.

    Science.gov (United States)

    Zink, R M; Weller, S J; Blackwell, R C

    1998-10-01

    We sequenced 1709 base pairs (bp) of mitochondrial DNA including parts of cytochrome b, ND 2, and the control region (CR I, II) for seven members of the avian genus Pipilo (towhees), Melozone kieneri (rusty-crowned ground-sparrow), and Arremonops rufivirgatus (olive sparrow). A total of 457 bp was variable and 257 bp were potentially phylogenetically informative. All gene regions were similarly variable (20.2 to 28.4%) except for CR II (38.4%); third position transitions were as common as substitutions in the CR. Tree topology was sensitive to choice of outgroup(s) and individual sequences used as exemplars. Six trees were considered viable phylogenetic hypotheses based on maximum parsimony and maximum likelihood analyses. These trees generally supported two groups of towhees (rufous-sided group, brown towhee group), a sister taxon relationship for P. aberti and P. crissalis, and a sister taxon relationship for P. ocai and P. maculatus. The occurrence of M. kiernei within Pipilo in three trees challenges the monophyly of the latter; the other species of Melozone and other outgroups require study to resolve Pipilo monophyly. The relationships of P. albicollis and P. fuscus were ambiguous, as they were with previous data sets (allozymes, mtDNA restriction sites); they could be sister species or either one could be the basal species in the brown towhee group. We suggest that this taxonomic uncertainty obtains from the contemporaneous origin of P. fuscus, P. albicollis, and the ancestor of P. aberti/P. crissalis. We favor a "star" phylogeny because species in unrelated lineages found in the same region as P. albicollis are similarly difficult to resolve phylogenetically. Synapomorphies from coding genes and the CR did not preferentially support basal and terminal nodes, and hence did not provide different windows of taxonomic resolution, which might be expected from the apparent rapid rate of CR evolution. Phylogenetic trees inferred from allozymes, restriction sites

  10. Analysis of mating system in two Pinus cembra L. populations of the Ukrainian Carpathians

    Directory of Open Access Journals (Sweden)

    Dmitri V. Politov

    2013-12-01

    Full Text Available Volume 51 (1, 2008, pages 11-18Back Analysis of mating system in two Pinus cembra L. populations of the Ukrainian Carpathians     D.V. PolitovLaboratory of Population Genetics, Vavilov Institute of General Genetics, Russian Academy of Sciences Y.V. PirkoInstitute of Cell Biology and Genetic Engineering, Ukraine N.N. PirkoInstitute of Cell Biology and Genetic Engineering, Ukraine E.A. MudrikDonetsk Botanical Gardens, Ukraine I.I. KorshikovDonetsk Botanical Gardens, Ukraine  contact authors by Editorial Office  SUMMARY  In natural pine populations, a mixed mating system is typical, characterized by the proportions of selfed and outcrossed seeds. Swiss stone pine (Pinus cembra L. is one of the least studied European conifers in this respect. The mating system of six polymorphic allozyme loci were studied in haploid megagametophytes and diploid open-pollinated embryos in two stands located in the East Carpathians. In the 'Gorgany' population (24 trees, 198 seeds the mean singlelocus estimated outcrossing rate (ts was 0.731, and the multilocus estimate (tm was 0.773. In the 'Yayko' population the outcrossing rate was lower (27 trees, 213 seeds, ts=0.645, tm=0.700, suggesting 23-30% of seeds are self-pollinated. Correlation of outcrossing rate estimates among loci was less than 1, (0.300 in 'Gorgany' and 0.469 in 'Yayko' indicating biparental inbreeding occurred. Differences between tm and ts (0.042 in 'Gorgany' and 0.056 in 'Yayko' can also be influenced by consanguineous mating, indicated by the presence of spatial and genetic family structure. In small isolated populations of Pinus cembra, which are typical for the Carpathian part of the species' range, inbreeding depression may negatively affect seed quality. The high proportion of selfed seeds observed here can be expected in any seedlot of this species and should be taken into account while planning gene conservation or reforestation measures. Maternal trees in these populations

  11. Determining gene flow and the influence of selection across the equatorial barrier of the East Pacific Rise in the tube-dwelling polychaete Alvinella pompejana

    Directory of Open Access Journals (Sweden)

    Plouviez Sophie

    2010-07-01

    Full Text Available Abstract Background Comparative phylogeography recently performed on the mitochondrial cytochrome oxidase I (mtCOI gene from seven deep-sea vent species suggested that the East Pacific Rise fauna has undergone a vicariant event with the emergence of a north/south physical barrier at the Equator 1-2 Mya. Within this specialised fauna, the tube-dwelling polychaete Alvinella pompejana showed reciprocal monophyly at mtCOI on each side of the Equator (9°50'N/7°25'S, suggesting potential, ongoing allopatric speciation. However, the development of a barrier to gene flow is a long and complex process. Secondary contact between previously isolated populations can occur when physical isolation has not persisted long enough to result in reproductive isolation between genetically divergent lineages, potentially leading to hybridisation and subsequent allelic introgression. The present study evaluates the strength of the equatorial barrier to gene flow and tests for potential secondary contact zones between A. pompejana populations by comparing the mtCOI gene with nuclear genes. Results Allozyme frequencies and the analysis of nucleotide polymorphisms at three nuclear loci confirmed the north/south genetic differentiation of Alvinella pompejana populations along the East Pacific Rise. Migration was oriented north-to-south with a moderate allelic introgression between the two geographic groups over a narrow geographic range just south of the barrier. Multilocus analysis also indicated that southern populations have undergone demographic expansion as previously suggested by a multispecies approach. A strong shift in allozyme frequencies together with a high level of divergence between alleles and a low number of 'hybrid' individuals were observed between the northern and southern groups using the phosphoglucomutase gene. In contrast, the S-adenosylhomocysteine hydrolase gene exhibited reduced diversity and a lack of population differentiation possibly due to

  12. Molecular phylogenetics of the avian genus Pipilo and a biogeographic argument for taxonomic uncertainty.

    Science.gov (United States)

    Zink, R M; Weller, S J; Blackwell, R C

    1998-10-01

    We sequenced 1709 base pairs (bp) of mitochondrial DNA including parts of cytochrome b, ND 2, and the control region (CR I, II) for seven members of the avian genus Pipilo (towhees), Melozone kieneri (rusty-crowned ground-sparrow), and Arremonops rufivirgatus (olive sparrow). A total of 457 bp was variable and 257 bp were potentially phylogenetically informative. All gene regions were similarly variable (20.2 to 28.4%) except for CR II (38.4%); third position transitions were as common as substitutions in the CR. Tree topology was sensitive to choice of outgroup(s) and individual sequences used as exemplars. Six trees were considered viable phylogenetic hypotheses based on maximum parsimony and maximum likelihood analyses. These trees generally supported two groups of towhees (rufous-sided group, brown towhee group), a sister taxon relationship for P. aberti and P. crissalis, and a sister taxon relationship for P. ocai and P. maculatus. The occurrence of M. kiernei within Pipilo in three trees challenges the monophyly of the latter; the other species of Melozone and other outgroups require study to resolve Pipilo monophyly. The relationships of P. albicollis and P. fuscus were ambiguous, as they were with previous data sets (allozymes, mtDNA restriction sites); they could be sister species or either one could be the basal species in the brown towhee group. We suggest that this taxonomic uncertainty obtains from the contemporaneous origin of P. fuscus, P. albicollis, and the ancestor of P. aberti/P. crissalis. We favor a "star" phylogeny because species in unrelated lineages found in the same region as P. albicollis are similarly difficult to resolve phylogenetically. Synapomorphies from coding genes and the CR did not preferentially support basal and terminal nodes, and hence did not provide different windows of taxonomic resolution, which might be expected from the apparent rapid rate of CR evolution. Phylogenetic trees inferred from allozymes, restriction sites

  13. Population genetic structure and differentiation of Anthoxanthum a lpinum in the subalpine-alpine ecocline of Swiss Alps%阿尔卑斯山高山-亚高山过渡区高山黄花茅的群体遗传结构和分化研究

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    Allozyme variation in 6 enzyme systems coding 10 loci was estimated for 18 subpopulations of Anthoxanthum alpinum from three altitudinal transects in two localities of the Swiss Alps. Mean proportions of polymorphic loci (95% criterion), average number of alleles perlocus, and mean expected heterozygosity were 64.9%, 2.3 7 and 0.252, respectively. Mean genetic distance among populations was 0.011, and 79% of the genetic variation resided within populations. Based on allozyme analysis, marginal subpopulations appeared to have similar level of genetic variability to central subpopulations. Relatively high genetic differentiation, low gene flow values and small neighbourhood sizes suggested that inbreeding followed by genetic drift was possible causes of low genetic variability in Arp ette A. alpinum populations.%应用等位酶分析,在瑞士阿尔卑斯山的阿尔拜特(Arpette)和拜阿尔普(Belalp),沿三 个不同的海拔梯度,研究了高山黄花茅3个自然居群的遗传变异和分化。研究结果表明,平 均的多态性位点比例为64.9%,每个位点平均等位基因数为2.37,平均期望杂合性为0.252。 亚居群间平均的遗传距离为0.011,发现79%的遗传变异存在于居群内。基于等位酶分析,边缘亚居群与中心亚居群似乎有类似的遗传变异性。相对比较高的遗传分化、低的亚居群间 基因流和小的邻居大小值暗示,近交和随后的遗传漂变可能是导致阿尔拜特黄花茅居群遗传变异性较低的主要原因。

  14. Comparative molecular analysis of evolutionarily distant glyceraldehyde-3-phosphate dehydrogenase from Sardina pilchardus and Octopus vulgaris.

    Science.gov (United States)

    Baibai, Tarik; Oukhattar, Laila; Mountassif, Driss; Assobhei, Omar; Serrano, Aurelio; Soukri, Abdelaziz

    2010-12-01

    The NAD(+)-dependent cytosolic glyceraldehyde-3-phosphate dehydrogenase (GAPDH, EC 1.2.1.12), which is recognized as a key to central carbon metabolism in glycolysis and gluconeogenesis and as an important allozymic polymorphic biomarker, was purified from muscles of two marine species: the skeletal muscle of Sardina pilchardus Walbaum (Teleost, Clupeida) and the incompressible arm muscle of Octopus vulgaris (Mollusca, Cephalopoda). Comparative biochemical studies have revealed that they differ in their subunit molecular masses and in pI values. Partial cDNA sequences corresponding to an internal region of the GapC genes from Sardina and Octopus were obtained by polymerase chain reaction using degenerate primers designed from highly conserved protein motifs. Alignments of the deduced amino acid sequences were used to establish the 3D structures of the active site of two enzymes as well as the phylogenetic relationships of the sardine and octopus enzymes. These two enzymes are the first two GAPDHs characterized so far from teleost fish and cephalopod, respectively. Interestingly, phylogenetic analyses indicated that the sardina GAPDH is in a cluster with the archetypical enzymes from other vertebrates, while the octopus GAPDH comes together with other molluscan sequences in a distant basal assembly closer to bacterial and fungal orthologs, thus suggesting their different evolutionary scenarios.

  15. Spatial segregation of Darwinula stevensoni (Crustacea: Ostracoda genotypes in lentic and lotic habitats of Northern Italy

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    Andrea GANDOLFI

    2004-02-01

    Full Text Available The clonal structure of apomictic populations of Darwinula stevensoni from Northern Italy lacustrine and riverine habitats has been analysed by allozyme electrophoresis. Thirty two sites were sampled and a total of 748 individuals were analysed. Only one polymorphic locus, Gpi, turned out to have enough variation to be informative. Two thirds of all individuals were homozygous for the most frequent allele but the frequency of this genotype was significantly lower in rivers (16% than in lakes (92%. As a consequence homozygous clonal females are dominant in lacustrine habitats while heterozygous clonal females are dominant in riverine ones. Differences in genetic structure between habitats were observed even at distances of a few meters. Allele and genotype frequencies are significantly different between Lake Montorfano and its outflow (River Seveso and between Mantova lakes and their two tributaries, the River Mincio and Corniano Channel. The former is also the outflow of Lake Garda. By laboratory experiments, we previously reported difference between genotypes: homozygous females from Mantova lakes show significantly lower starvation tolerance than heterozygous females from River Mincio. We discuss the hypothesis that habitat segregation is related to this difference. Riverine females should be better adapted to low productivity ecosystems than lacustrine ones.

  16. Estimation of the number of founders of an invasive pest insect population: the fire ant Solenopsis invicta in the USA

    Science.gov (United States)

    Ross, Kenneth G; Shoemaker, D. DeWayne

    2008-01-01

    Determination of the number of founders responsible for the establishment of invasive populations is important for developing biologically based management practices, predicting the invasive potential of species, and making inferences about ecological and evolutionary processes. The fire ant Solenopsis invicta is a major invasive pest insect first introduced into the USA from its native South American range in the mid-1930s. We use data from diverse genetic markers surveyed in the source population and the USA to estimate the number of founders of this introduced population. Data from different classes of nuclear markers (microsatellites, allozymes, sex-determination locus) and mitochondrial DNA are largely congruent in suggesting that 9–20 unrelated mated queens comprised the initial founder group to colonize the USA at Mobile, Alabama. Estimates of founder group size based on expanded samples from throughout the southern USA were marginally higher than this, consistent with the hypothesis of one or more secondary introductions of the ant into the USA. The rapid spread and massive population build-up of introduced S. invicta occurred despite the loss of substantial genetic variation associated with the relatively small invasive propagule size, a pattern especially surprising in light of the substantial genetic load imposed by the loss of variation at the sex-determination locus. PMID:18577505

  17. Genetic diversity of sockeye salmon (`oncorhynchus nerka`) of Cook Inlet, Alaska, and its application to restoration of injured populations of the Kenai River. Exxon Valdez Oil Spill Restoration Project 93012 and 94255-2. Final report

    Energy Technology Data Exchange (ETDEWEB)

    Seeb, L.W.; Habicht, C.; Templin, W.D.; Fetzner, J.W.; Gates, R.B.

    1995-11-01

    Genetic data from sockeye salmon (Oncorhynchus nerka) were collected from all significant spawning populations contributing to mixed-stock harvests in Cook Inlet. A total of 68 allozyme loci were resolved from 37 populations. Mitochondrial DNA data from the NADH subunits 5 and 6 were collected from 19 of the populations. Mixed-stock analyses using maximum likelihood methods with 27 loci were evaluated to estimate the proportion of Kenai River populations in Central District drift fisheries. Simulations indicate that Kenai River populations can be identified in mixtures at a level of precision and accuracy useful for restoration and fishery management. Mixed-stock samples from Cook Inlet drift net fisheries were analyzed both inseason (48 hr) and post-season. Samples from fish wheels from the Kenai, Kasilof, Yentna, and Susitna River systems were also analyzed. Inclusion of mtDNA data in the analysis is being investigated to determine if it improves precision and accuracy. Results from this study are currently being used in the management and restoration of Kenai River sockeye salmon injured in the 1989 Exxon Valdex oil spill.

  18. Pollination, mating and reproductive fitness in a plant population with bimodal floral-tube length.

    Science.gov (United States)

    Anderson, B; Pauw, A; Cole, W W; Barrett, S C H

    2016-08-01

    Mating patterns and natural selection play important roles in determining whether genetic polymorphisms are maintained or lost. Here, we document an atypical population of Lapeirousia anceps (Iridaceae) with a bimodal distribution of floral-tube length and investigate the reproductive mechanisms associated with this pattern of variation. Flowers were visited exclusively by the long-proboscid fly Moegistorhynchus longirostris (Nemestrinidae), which exhibited a unimodal distribution of proboscis length and displayed a preference for long-tubed phenotypes. Despite being visited by a single pollinator species, allozyme markers revealed significant genetic differentiation between open-pollinated progeny of long- and short-tubed phenotypes suggesting mating barriers between them. We obtained direct evidence for mating barriers between the floral-tube phenotypes through observations of pollinator foraging, controlled hand pollinations and measurements of pollen competition and seed set. Intermediate tube-length phenotypes produced fewer seeds in the field than either long- or short-tubed phenotypes. Although floral-tube length bimodality may not be a stable state over long timescales, reproductive barriers to mating and low 'hybrid' fitness have the potential to contribute to the maintenance of this state in the short term. PMID:27206242

  19. Use of RAPD analyses to estimate population genetic parameters in the alfalfa leaf-cutting bee, Megachile rotundata.

    Science.gov (United States)

    Lu, R; Rank, G H

    1996-08-01

    RAPD analyses were performed on five geographically isolated populations of Megachile rotundata. We used haploid males of the alfalfa leaf-cutting bee, M. rotundata, to overcome the limitation of the dominance of RAPD markers in the determination of population genetic parameters. Sixteen primers gave rise to 130 polymorphic and 31 monomorphic bands. The unbiased estimators calculated in this study include within- and between-population heterozygosity, nucleotide divergence, and genetic distance. The genetic diversity (H = 0.32-0.35) was found to be about 10 times that of previous estimates (H = 0.033) based on allozyme data. Contrary to the data obtained at the protein level, our results suggest that Hymenoptera do not have a lower level of genetic variability at the DNA level compared with other insect species. Regardless of the different assumptions underlying the calculation of heterozygosity, divergence, and genetic distance, all five populations showed a parallel interrelationship for the three parameters. We conclude that RAPD markers are a convenient tool to estimate population genetic variation in haploid M. rotundata and that with an adequate sample size the technique is applicable to the evaluation of divergence in diploid populations. Key words : Megachile rotundata, RAPD, heterozygosity, genetic distance, nucleotide divergence. PMID:18469925

  20. Biochemical comparison of two Hypostomus populations (Siluriformes, Loricariidae from the Atlântico Stream of the upper Paraná River basin, Brazil

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    Kennya F. Ito

    2009-01-01

    Full Text Available Two syntopic morphotypes of the genus Hypostomus - H. nigromaculatus and H. cf. nigromaculatus (Atlântico Stream, Paraná State - were compared through the allozyme electrophoresis technique. Twelve enzymatic systems (AAT, ADH, EST, GCDH, G3PDH, GPI, IDH, LDH, MDH, ME, PGM and SOD were analyzed, attributing the score of 20 loci, with a total of 30 alleles. Six loci were diagnostic (Aat-2, Gcdh-1, Gpi-A, Idh-1, Ldh-A and Mdh-A, indicating the presence of interjacent reproductive isolation. The occurrence of few polymorphic loci acknowledge two morphotypes, with heterozygosity values He = 0.0291 for H. nigromaculatus and He = 0.0346 for H. cf. nigromaculatus. F IS statistics demonstrated fixation of the alleles in the two morphotypes. Genetic identity (I and distance (D of Nei (1978 values were I = 0.6515 and D = 0.4285. The data indicate that these two morphotypes from the Atlântico Stream belong to different species.

  1. Molecular genetic evidence for the place of origin of the Pacific rat, Rattus exulans.

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    Vicki Thomson

    Full Text Available Commensal plants and animals have long been used to track human migrations, with Rattus exulans (the Pacific rat a common organism for reconstructing Polynesian dispersal in the Pacific. However, with no knowledge of the homeland of R. exulans, the place of origin of this human-commensal relationship is unknown. We conducted a mitochondrial DNA phylogeographic survey of R. exulans diversity across the potential natural range in mainland and Island Southeast Asia in order to establish the origin of this human-commensal dyad. We also conducted allozyme electrophoresis on samples from ISEA to obtain a perspective on patterns of genetic diversity in this critical region. Finally, we compared molecular genetic evidence with knowledge of prehistoric rodent faunas in mainland and ISEA. We find that ISEA populations of R. exulans contain the highest mtDNA lineage diversity including significant haplotype diversity not represented elsewhere in the species range. Within ISEA, the island of Flores in the Lesser Sunda group contains the highest diversity in ISEA (across all loci and also has a deep fossil record of small mammals that appears to include R. exulans. Therefore, in addition to Flores harboring unusual diversity in the form of Homo floresiensis, dwarfed stegodons and giant rats, this island appears to be the homeland of R. exulans.

  2. Influence of volcanic activity on the population genetic structure of Hawaiian Tetragnatha spiders: Fragmentation, rapid population growth and the potential for accelerated evolution

    Science.gov (United States)

    Vandergast, A.G.; Gillespie, R.G.; Roderick, G.K.

    2004-01-01

    Volcanic activity on the island of Hawaii results in a cyclical pattern of habitat destruction and fragmentation by lava, followed by habitat regeneration on newly formed substrates. While this pattern has been hypothesized to promote the diversification of Hawaiian lineages, there have been few attempts to link geological processes to measurable changes in population structure. We investigated the genetic structure of three species of Hawaiian spiders in forests fragmented by a 150-year-old lava flow on Mauna Loa Volcano, island of Hawaii: Tetragnatha quasimodo (forest and lava flow generalist), T. anuenue and T. brevignatha (forest specialists). To estimate fragmentation effects on population subdivision in each species, we examined variation in mitochondrial and nuclear genomes (DNA sequences and allozymes, respectively). Population subdivision was higher for forest specialists than for the generalist in fragments separated by lava. Patterns of mtDNA sequence evolution also revealed that forest specialists have undergone rapid expansion, while the generalist has experienced more gradual population growth. Results confirm that patterns of neutral genetic variation reflect patterns of volcanic activity in some Tetragnatha species. Our study further suggests that population subdivision and expansion can occur across small spatial and temporal scales, which may facilitate the rapid spread of new character states, leading to speciation as hypothesized by H. L. Carson 30 years ago.

  3. Genetic ecotoxicology of radionuclides in mosquitofish: An overview

    Energy Technology Data Exchange (ETDEWEB)

    Theodorakis, C.W. [Oak Ridge Associated Universities, TN (United States); Blaylock, B.G. [SENES, Oak Ridge, TN (United States); Shugart, L.R. [Oak Ridge National Lab., TN (United States)

    1995-12-31

    This paper summarizes several experiments conducted at Oak Ridge National Laboratory over the last several years. In 1977, approximately 250 western mosquitofish (Gambusia affinis) were transplanted from a non-contaminated pond into a radionuclide-contaminated settling basin. These, two populations, along with an additional contaminated and non-contaminated population, are the focus of these studies. Parameters measured were DNA strand breaks, fecundity, embryonic abnormalities, and RAPD and allozyme genotypes. The results are as follows: (1) the fish from the contaminated sites had more strand breaks than reference fish; (2) the number of strand breaks were negatively correlated with fecundity and positively correlated with abnormalities; (3) the contaminated populations had higher genetic diversity, and displayed a higher frequency of certain RAPD markers (contaminant-indicative markers) as well as nucleoside phosphorylase (NP) heterozygotes; (4) fish which displayed the contaminant-indicative markers or were NP heterozygotes had higher fecundity and fewer strand breaks than other fish when exposed to radiation. These types of studies are significant because they integrate responses from the molecular, organismal and population levels of biological organization. These results are discussed in relation to needs for future study and relevancy of RAPD research, as well as genetic ecotoxicology in general, to environmental monitoring programs.

  4. Isozyme and RAPD studies in Prosopis glandulosa and P. Velutina (Leguminosae, Mimosoideae

    Directory of Open Access Journals (Sweden)

    Bessega Cecilia

    2000-01-01

    Full Text Available Allozyme and random amplified polymorphic DNA (RAPD techniques have been compared for their usefulness for genetic and taxonomic studies in Prosopis glandulosa and P. velutina populations. Isozymes and RAPDs yielded similarly high estimates of genetic variability. Genetic structure and differentiation were analyzed through non-hierarchical Wright's F DT. For all populations considered, both markers produced low gene flow (Nm 1, in agreement with that expected for conspecific populations. However, in RAPD data the expected reduction in F DT and the increase in Nm were not observed. Correlation between F DT and geographical distance matrices (Mantel test for all populations was significant (P = 0.02 when based on isozymes, but not so (P = 0.33 when based on RAPDs. No significant associations among genetic and geographical or climatic variables were observed. Two isoenzyme systems (GOT and PRX enabled us to distinguish between P. glandulosa and P. velutina, but no diagnostic band for recognition of populations or species studied here were detected by RAPD. However, RAPD markers showed higher values for genetic differentiation among conspecific populations of P. glandulosa and a lower coefficient of variation than those obtained from isozymes.

  5. Barriers to gene flow in the marine environment: insights from two common intertidal limpet species of the Atlantic and Mediterranean.

    Science.gov (United States)

    Sá-Pinto, Alexandra; Branco, Madalena S; Alexandrino, Paulo B; Fontaine, Michaël C; Baird, Stuart J E

    2012-01-01

    Knowledge of the scale of dispersal and the mechanisms governing gene flow in marine environments remains fragmentary despite being essential for understanding evolution of marine biota and to design management plans. We use the limpets Patella ulyssiponensis and Patella rustica as models for identifying factors affecting gene flow in marine organisms across the North-East Atlantic and the Mediterranean Sea. A set of allozyme loci and a fragment of the mitochondrial gene cytochrome C oxidase subunit I were screened for genetic variation through starch gel electrophoresis and DNA sequencing, respectively. An approach combining clustering algorithms with clinal analyses was used to test for the existence of barriers to gene flow and estimate their geographic location and abruptness. Sharp breaks in the genetic composition of individuals were observed in the transitions between the Atlantic and the Mediterranean and across southern Italian shores. An additional break within the Atlantic cluster separates samples from the Alboran Sea and Atlantic African shores from those of the Iberian Atlantic shores. The geographic congruence of the genetic breaks detected in these two limpet species strongly supports the existence of transpecific barriers to gene flow in the Mediterranean Sea and Northeastern Atlantic. This leads to testable hypotheses regarding factors restricting gene flow across the study area.

  6. Barriers to gene flow in the marine environment: insights from two common intertidal limpet species of the Atlantic and Mediterranean.

    Directory of Open Access Journals (Sweden)

    Alexandra Sá-Pinto

    Full Text Available Knowledge of the scale of dispersal and the mechanisms governing gene flow in marine environments remains fragmentary despite being essential for understanding evolution of marine biota and to design management plans. We use the limpets Patella ulyssiponensis and Patella rustica as models for identifying factors affecting gene flow in marine organisms across the North-East Atlantic and the Mediterranean Sea. A set of allozyme loci and a fragment of the mitochondrial gene cytochrome C oxidase subunit I were screened for genetic variation through starch gel electrophoresis and DNA sequencing, respectively. An approach combining clustering algorithms with clinal analyses was used to test for the existence of barriers to gene flow and estimate their geographic location and abruptness. Sharp breaks in the genetic composition of individuals were observed in the transitions between the Atlantic and the Mediterranean and across southern Italian shores. An additional break within the Atlantic cluster separates samples from the Alboran Sea and Atlantic African shores from those of the Iberian Atlantic shores. The geographic congruence of the genetic breaks detected in these two limpet species strongly supports the existence of transpecific barriers to gene flow in the Mediterranean Sea and Northeastern Atlantic. This leads to testable hypotheses regarding factors restricting gene flow across the study area.

  7. Reproductive strategies and genetic variability in tropical freshwater fish

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    Maria Dolores Peres Lassala

    2007-01-01

    Full Text Available We estimated the genetic variability of nine fish species from the Brazilian upper Paraná River floodplain (Astyanax altiparanae, Hoplias malabaricus, Leporinus lacustris, Loricariichthys platymetopon, Parauchenipterus galeatus, Pimelodus maculatus, Rhaphiodon vulpinus, Roeboides paranensis and Serrasalmus marginatus based on data for 36 putative allozyme loci obtained using corn starch gel electrophoresis of 13 enzymatic systems: aspartate aminotransferase (EC 2.6.1.1, acid phosphatase (EC 3.1.3.2, esterase (EC 3.1.1.1, glycerol-3-phosphate dehydrogenase (EC 1.1.1.8, glucose-6-phosphate dehydrogenase (EC 1.1.1.49, glucose-6-phosphate isomerase (EC 5.3.1.9, Iditol dehydrogenase (EC 1.1.1.14, isocitrate dehydrogenase - NADP+ (EC 1.1.1.42, L-lactate dehydrogenase (EC 1.1.1.27, malate dehydrogenase (EC 1.1.1.37, malate dehydrogenase-NADP+ (EC 1.1.1.40, phosphoglucomutase (EC 5.4.2.2 and superoxide dismutase, (EC 1.15.1.1. The mean expected heterozygosity varied from zero to 0.147. When data from the literature for 75 species of tropical fish were added to the nine species of this study, the heterozygosity values differed significantly among the groups of different reproductive strategies. The highest mean heterozygosity was for the non-migratory without parental care, followed by the long-distance migratory, and the lowest mean was for the non-migratory with parental care or internal fecundation.

  8. Genetic evidence against panmixia in the European eel.

    Science.gov (United States)

    Wirth, T; Bernatchez, L

    2001-02-22

    The panmixia hypothesis--that all European eel (Anguilla anguilla) migrate to the Sargasso Sea for reproduction and comprise a single, randomly mating population--is widely accepted. If true, then this peculiar life history strategy would directly impact the population genetics of this species, and eels from European and north African rivers should belong to the same breeding population through the random dispersal of larvae. To date, the panmixia hypothesis has remained unchallenged: genetic studies realized on eel's mitochondrial DNA failed to detect any genetic structure; and a similar lack of structure was found using allozymes, with the exception of clinal variation imposed by selection. Here we have used highly polymorphic genetic markers that provide better resolution to investigate genetic structure in European eel. Analysis of seven microsatellite loci among 13 samples from the north Atlantic, the Baltic Sea and the Mediterranean Sea basins reveals that there is global genetic differentiation. Moreover, pairwise Cavalli-Sforza and Edwards chord distances correlate significantly with coastal geographical distance. This pattern of genetic structure implies non-random mating and restricted gene flow among eels from different sampled locations, which therefore refute the hypothesis of panmixia. Consequently, the reproductive biology of European eel must be reconsidered. PMID:11234011

  9. Distribution of pathogenic Naegleria spp in Thailand.

    Science.gov (United States)

    Tiewcharoen, S; Junnu, V

    2001-01-01

    Research concerning the distribution, isolation, viability, ultrastructure, morphology and immunogenicity of Naegleria fowleri has been increasing in Thailand during 1988-2000. The distribution of the organism was carried out from 1985 to 1987 in Si Sa Ket and Ubon Rachathani Provinces, after the first fatal case was reported in Si Sa Ket. Since then in a 1998 survey of N. fowleri in stagnant water around industrial areas was carried out in Pathum Thani, Samut Prakan and Lopburi provinces. The results showed that 10% of pathogenic Naegleria belonged to species fowleri as characterized by morphology and the occurrence of pathogenesis in mice after nasal inoculation. In the same year, Nacapunchai et al (1999) determined the prevalence of amebae in aquatic habitat of human environments in five parts of Thailand during the summer. Fourteen percent of free living Naegleria spp were found in both soil and water resources. Recent studies of the ultrastructure, factors affecting the viability and SDS-PAGE electrophoretic patterns of 3 Thai strains of pathogenic Naegleria spp indicated their similarities in morphological characteristics of pathogenic reference control, Naegleria fowleri CDC VO 3081. Additional study using a genetic approach to species criteria using allozyme electrophoresis had been conducted.

  10. Bayesian variable selection for detecting adaptive genomic differences among populations.

    Science.gov (United States)

    Riebler, Andrea; Held, Leonhard; Stephan, Wolfgang

    2008-03-01

    We extend an F(st)-based Bayesian hierarchical model, implemented via Markov chain Monte Carlo, for the detection of loci that might be subject to positive selection. This model divides the F(st)-influencing factors into locus-specific effects, population-specific effects, and effects that are specific for the locus in combination with the population. We introduce a Bayesian auxiliary variable for each locus effect to automatically select nonneutral locus effects. As a by-product, the efficiency of the original approach is improved by using a reparameterization of the model. The statistical power of the extended algorithm is assessed with simulated data sets from a Wright-Fisher model with migration. We find that the inclusion of model selection suggests a clear improvement in discrimination as measured by the area under the receiver operating characteristic (ROC) curve. Additionally, we illustrate and discuss the quality of the newly developed method on the basis of an allozyme data set of the fruit fly Drosophila melanogaster and a sequence data set of the wild tomato Solanum chilense. For data sets with small sample sizes, high mutation rates, and/or long sequences, however, methods based on nucleotide statistics should be preferred. PMID:18245358

  11. Molecular Variation of Adh and P6 Genes in an African Population of Drosophila Melanogaster and Its Relation to Chromosomal Inversions

    Science.gov (United States)

    Benassi, V.; Aulard, S.; Mazeau, S.; Veuille, M.

    1993-01-01

    Four-cutter molecular polymorphism of Adh and P6, and chromosome inversion polymorphism of chromosome II were investigated in 95 isogenic lines of an Ivory Coast population of Drosophila melanogaster, a species assumed to have recently spread throughout the world from a West African origin. The P6 gene showed little linkage disequilibrium with the In(2L)t inversion, although it is located within this inversion. This suggests that the inversion and the P6 locus have extensively exchanged genetic information through either double crossover or gene conversion. Allozymic variation in ADH was in linkage disequilibrium with In(2L)t and In(2R)NS inversions. Evidence suggests either that inversion linkage with the Fast allele is selectively maintained, or that this allele only recently appeared. Molecular polymorphism at the Adh locus in the Ivory Coast is not higher than in North American populations. New haplotypes specific to the African population were found, some of them connect the ``Wa(s)-like'' haplotypes found at high frequencies in the United States to the other slow haplotypes. Their relation with In(2L)t supports the hypothesis that Wa(s) recently recombined away from an In(2L)t chromosome which may be the cause of its divergence from the other haplotypes. PMID:8349110

  12. Postglacial colonisation of western Central Europe by Polyommatus coridon (Poda 1761) (Lepidoptera: Lycaenidae): evidence from population genetics.

    Science.gov (United States)

    Schmitt, T; Giessl, A; Seitz, A

    2002-01-01

    The genetic population structure of Polyommatus coridon (Poda 1761) over large regions of France, Italy and Germany was studied by allozyme electrophoresis. The genetic diversity within populations was high for all parameters analysed (number of alleles 2.72; observed and expected heterozygosity 19.6% and 20.3%, respectively; percentage of polymorphic loci: total: 76.4% and, with polymorphism if the frequency of the commonest allele is below 95%: 53.1%), whereas genetic differentiation between populations was comparatively low (FST = 0.021 +/- 0.002). The mean number of alleles declined significantly from southern to northern populations (r = -0.53, P = 0.0005). Similar effects were found also for other parameters of genetic diversity. This is interpreted as a loss of genetic diversity during postglacial expansion. However, samples from France and Italy had similar patterns of genetic diversity indicating no significant loss in this region. Populations from southern Germany were genetically uniform, well differentiated from French populations and showed a significant loss of genetic diversity. Probably, this is due to a bottleneck during passing through the Burgundian Gap, which is a migration corridor from north-eastern France to southern Germany. In contrast to southern German populations, western German populations were not well differentiated from French populations. Nevertheless, they were genetically impoverished, probably as a result from local bottlenecks and post-expansion phenomena.

  13. Shift in phenotypic variation coupled with rapid loss of genetic diversity in captive populations of Eristalis tenax (Diptera: Syrphidae): consequences for rearing and potential commercial use.

    Science.gov (United States)

    Francuski, Ljubinka; Djurakic, Marko; Ludoski, Jasmina; Hurtado, Pilar; Pérez-Bañón, Celeste; Ståhls, Gunilla; Rojo, Santos; Milankov, Vesna

    2014-04-01

    Because of its importance as a pollinator and its potential economic usefulness for the biodegradation of organic animal waste, the genetic and phenotypic diversity of the drone fly, Eristalis tenax L. (Diptera: Syrphidae), was studied in both wild and captive populations from southeastern Europe. Wild specimens from a natural protected habitat (with low human impact), field crop habitat (semisynanthropic condition), and intensive pig farming habitat (synanthropic condition) were compared with a laboratory colony reared on artificial media An integrative approach was applied based on allozyme loci, cytochrome c oxidase I mitochondrial DNA, wing traits (size and shape), and abdominal color patterns. Our results indicate that the fourth and eighth generations of the laboratory colony show a severe lack of genetic diversity compared with natural populations. Reduced genetic diversity in subsequent generations (F4 and F8) of the laboratory colony was found to be linked with phenotypic divergence. Loss of genetic variability associated with phenotypic differentiation in laboratory samples suggests a founder effect, followed by stochastic genetic processes and inbreeding. Hence, our results have implications for captive bred Eristalis flies, which have been used in crop pollination and biodegradation of organic waste under synanthropic conditions. PMID:24772566

  14. Three dimensional geometric morphometric study of the Ethiopian Myomys - Stenocephalemys complex (Murinae, Rodentia

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    Carlo Fadda

    2000-06-01

    Full Text Available Abstract Geometric morphometrics was used to investigate the Ethiopian Myomys - Stenocephalemys complex, and to suggest possible explanations for differences in size and shape. The four species of the complex (M. albipes, M. ruppi, S. griseicauda, S. albocaudata and a Kenyan species, M. fumatus, were studied using Procrustes analysis of three dimensional landmarks collected over the skull. All these species occur in very different habitats, from forests at 1000 m up to the Afro Alpine moorlands above 4000 m. There is a substantial contradiction between phylogenetic relationships based on chromosomal rearrangements and allozymes (two distinct lineages corresponding to the two genera, and mtDNA (Stenocephalemys being paraphyletic. Geometric morphometrics supports the former hypothesis. Partial Least-Squares analysis shows a significant relation between variation in size and shape and altitude, which strongly suggests that adaptation is a major causal factor for divergence in the morphology of the skull. Size increases with altitude, paralleling a clinal change in shape, which involves stenocephaly as characterising the highland species. This shape modification allows the rodents to scan the sky efficiently for birds, which represent the main category of predators in the Afro Alpine moorlands.

  15. Chikungunya virus susceptibility & variation in populations of Aedes aegypti (Diptera: Culicidae mosquito from India

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    Mangesh D Gokhale

    2015-01-01

    Full Text Available Background & objectives: Although having immense clinical relevance, yet only a few studies have been targeted to understand the chikungunya virus (CHIKV susceptibility and growth in Aedes aegypti populations from India. This study was undertaken to investigate CHIKV susceptibility and growth kinetics in Ae. aegypti along with genetic heterogeneity of Ae. aegypti populations. Methods: Dose dependent CHIKV susceptibility and growth kinetic studies for three CHIKV strains reported from India were carried out in Ae. aegypti mosquito populations. The phenotypic variation and genetic heterogeneity in five Ae. aegypti populations were investigated using multivariate morphometrics and allozyme variation studies. Results: The dissemination and growth kinetics studies of the three CHIKV strains showed no selective advantage for a particular strain of CHIKV in Ae. aegypti. At 100 per cent infection rate, five geographic Ae. aegypti populations showed differences in dissemination to three CHIKV strains. Morphometric studies revealed phenotypic variation in all the studied populations. The allelic frequencies, F statistics, and Nei′s genetic identity values showed that genetic differences between the populations were small, but significant. Interpretation & conclusions: The results obtained in this study suggest that genetic background of the vector strongly influences the CHIKV susceptibility in Ae. aegypti.

  16. Genetic and morphometric differences between yellowtail snapper (Ocyurus chrysurus, Lutjanidae populations of the tropical West Atlantic

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    Anderson V. Vasconcellos

    2008-01-01

    Full Text Available Populations of Ocyurus chrysurus were compared genetically and morphometrically along the West Atlantic coast to test the null hypothesis of population homogeneity in the area. Brazilian populations were found to be differentiated in shape (canonical variates analysis; F[48,515] = 10.84, p < 0.0001. Analyses of mitochondrial DNA sequences (663 bp of the control region did not show any differences between Brazilian populations but could detect differences between Brazilian and Caribbean (Belize populations. The samples from Pernambuco differed significantly from the other Brazilian populations in allozyme frequencies (11 loci; F ST = 0.167; p < 0.05, but this may have resulted from the small number of samples analysed for that population. Sequence variation of Belize samples departed from neutral expectations (Fu's FS = -8.88; p < 0.001. A mismatch distribution analysis points to an ancient population expansion in that area. We conclude that the genetic data do not allow the rejection of the null hypothesis of panmixia for Brazilian yellowtail snapper populations which should be treated as a single genetic stock, with a latitudinal gradient on their morphology which probably results from phenotypic plasticity. On the other hand, there is a severe restriction to gene flow between O. chrysurus populations from the Caribbean and from the southwestern Atlantic.

  17. Genetic elucidation of cryptic and ancient diversity in a group of Australian diplodactyline geckos: the Diplodactylus vittatus complex.

    Science.gov (United States)

    Oliver, Paul; Hugall, Andrew; Adams, Mark; Cooper, Steven J B; Hutchinson, Mark

    2007-07-01

    We examine species boundaries and phylogenetic relationships within the Australian diplodactyline geckos currently assigned to Diplodactylus granariensis and Diplodactylus vittatus using data from multiple allozyme loci, the mitochondrial ND2 gene and published karyotypic studies. These analyses uncover at least six morphologically cryptic but genetically distinctive species. The taxa identified correspond poorly with the existing taxonomy and represent a paraphyletic assemblage with respect to a number of other Diplodactylus species included in analyses. Molecular dating indicates that the species identified evolved considerably before the Pleistocene, and that the basal node of the D. vittatus species group (as redefined here) is of comparable age to entire radiations of other Australian squamate families. The antiquity of this one small group within the diplodactyline geckos suggests that further study of patterns of diversification in the diplodactylines will provide both a valuable insight into long-term patterns of environmental change in the Australian continent and a useful contrast for analysis of patterns of radiation in other Australian lizard groups. PMID:17467299

  18. Geographic patterns in the reproductive ecology of Agave lechuguilla (Agavaceae) in the Chihuahuan desert. II. Genetic variation, differentiation, and inbreeding estimates.

    Science.gov (United States)

    Silva-Montellano, Arturo; Eguiarte, Luis E

    2003-05-01

    Plants with natural variation in their floral traits and reproductive ecology are ideal subjects for analyzing the effects of natural selection and other evolutionary forces on genetic structure of natural populations. Agave lechuguilla shows latitudinal changes in floral morphology, color, and nectar production along its distribution through north-central Mexico. Both the type and abundance of its pollinators also change with latitude. Using starch electrophoresis, we examined the levels and patterns of variation of 13 polymorphic allozyme loci in 11 populations of A. lechuguilla. The overall level of genetic variability was high (H(e) = 0.394), but the levels of genetic variation had no geographic pattern. However, the southern populations exhibited an excess of heterozygotes in relation to expectations for Hardy-Weinberg equilibrium, whereas the northern populations had an excess of homozygotes. Total differentiation among populations was low (θ = 0.083), although gene flow estimates (Nm) varied among groups of populations: southern populations had the lowest levels of genetic differentiation, suggesting high levels of gene flow; northern populations had greater levels of genetic differentiation (θ = 0.115), suggesting low gene flow among them. The patterns and inferences of the genetic structure of the population at the molecular level is consistent with variation in floral traits and pollinator visitation rates across the range of the species. PMID:21659165

  19. Chromosomal similarity between the Scaly-headed parrot (Pionus maximiliani, the Short-tailed parrot (Graydidascalus brachyurus and the Yellow-faced parrot (Salvatoria xanthops (Psittaciformes: Aves: a cytotaxonomic analysis

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    Renato Caparroz

    2004-01-01

    Full Text Available Behavior, morphology, allozyme studies and DNA hybridization and sequencing data all suggest the independent evolution of the Old and New World parrots and support tribe status for the American species, although the phylogenetic relationships within this tribe are still poorly understood. A previous study has shown that the Yellow-faced parrot (Amazona xanthops Spix 1824 exhibits large karyotypic differences compared to the other Amazona species and suggested that this species should be renamed Salvatoria xanthops, although the relationships between S. xanthops and the other New World parrots remain unclear. In the present work, we describe the karyotype of the Scaly-headed parrot (Pionus maximiliani, Kuhl 1820 and the karyotype and C-banding pattern of the Short-tailed parrot (Graydidascalus brachyurus, Kuhl 1820 and compare them to the karyotype and C-banding pattern of S. xanthops, as well as to the karyotypes of other New World parrots. The chromosomal similarity between these three species and the karyotypic differences between them and other New World parrots suggest that G. brachyurus and S. xanthops are sister species and are most closely related to members of the genus Pionus.

  20. Clonal diversity and clone formation in the parthenogenetic Caucasian rock lizard Darevskia dahlia.

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    Andrey A Vergun

    Full Text Available The all-female Caucasian rock lizard species Darevskia dahli and other parthenogenetic species of this genus reproduce normally via true parthenogenesis. Previously, the genetic diversity of this species was analyzed using allozymes, mitochondrial DNA, and DNA fingerprint markers. In the present study, variation at three microsatellite loci was studied in 111 specimens of D. dahli from five populations from Armenia, and new information regarding clonal diversity and clone formation in D. dahli was obtained that suggests a multiple hybridization origin. All individuals but one were heterozygous at the loci studied. Based on specific allele combinations, 11 genotypes were identified among the individuals studied. Individuals with the same genotypes formed distinct clonal lineages: one major clone was represented by 72 individuals, an intermediate clone was represented by 21 individuals, and nine other clones were rare and represented by one or several individuals. A new approach based on the detection and comparison of genotype-specific markers formed by combinations of parental-specific markers was developed and used to identify at least three hybridization founder events that resulted in the initial formation of one major and two rare clones. All other clones, including the intermediate and seven rare clones, probably arose through postformation microsatellite mutations of the major clone. This approach can be used to identify hybridization founder events and to study clone formation in other unisexual taxa.

  1. Clonal diversity and clone formation in the parthenogenetic Caucasian rock lizard Darevskia dahlia.

    Science.gov (United States)

    Vergun, Andrey A; Martirosyan, Irena A; Semyenova, Seraphima K; Omelchenko, Andrey V; Petrosyan, Varos G; Lazebny, Oleg E; Tokarskaya, Olga N; Korchagin, Vitaly I; Ryskov, Alexey P

    2014-01-01

    The all-female Caucasian rock lizard species Darevskia dahli and other parthenogenetic species of this genus reproduce normally via true parthenogenesis. Previously, the genetic diversity of this species was analyzed using allozymes, mitochondrial DNA, and DNA fingerprint markers. In the present study, variation at three microsatellite loci was studied in 111 specimens of D. dahli from five populations from Armenia, and new information regarding clonal diversity and clone formation in D. dahli was obtained that suggests a multiple hybridization origin. All individuals but one were heterozygous at the loci studied. Based on specific allele combinations, 11 genotypes were identified among the individuals studied. Individuals with the same genotypes formed distinct clonal lineages: one major clone was represented by 72 individuals, an intermediate clone was represented by 21 individuals, and nine other clones were rare and represented by one or several individuals. A new approach based on the detection and comparison of genotype-specific markers formed by combinations of parental-specific markers was developed and used to identify at least three hybridization founder events that resulted in the initial formation of one major and two rare clones. All other clones, including the intermediate and seven rare clones, probably arose through postformation microsatellite mutations of the major clone. This approach can be used to identify hybridization founder events and to study clone formation in other unisexual taxa. PMID:24618670

  2. Reduced genetic variation in the Japanese giant salamander, Andrias japonicus (Amphibia: Caudata).

    Science.gov (United States)

    Matsui, Masafumi; Tominaga, Atsushi; Liu, Wan-zhao; Tanaka-Ueno, Tomoko

    2008-10-01

    The phylogenetic relationships among 46 samples from 27 populations of the Japanese giant salamander, Andriasjaponicus and its congener, A. davidianus from China was investigated, using 3664 bp sequences of the mitochondrial genes NADH1, NADH3, cyt b and CR, partial NADH6 and intervening genes. In phylogenetic trees constructed by MP, ML, and Bayesian methods, the family Cryptobranchidae and the genus Andrias both form monophyletic groups. Japanese A. japonicus and Chinese A. davidianus are sister taxa and can be regarded as separate species despite a small degree of genetic differentiation. Andriasjaponicus is divided into central and western clades, but the phylogenetic relationships within the latter clade are unresolved. As previously reported from allozyme analyses, A. japonicus exhibits little genetic differentiation, in strong contrast to salamanders of the genus Hynobius with which their distributions overlap. This reduced genetic variability in A. japonicus is attributable to a unique mating system of polygyny, delayed sexual maturity, notable longevity, life in a stable aquatic environment, and gigantism, as well as bottleneck effects following habitat fragmentation and extinction of local populations during Quaternary glaciations. The species is thus susceptible to extinction by potential environmental fluctuations, and requires extensive conservation measures. PMID:18723097

  3. Molecular phylogeny of western Atlantic Farfantepenaeus and Litopenaeus shrimp based on mitochondrial 16S partial sequences.

    Science.gov (United States)

    Maggioni, R; Rogers, A D; Maclean, N; D'Incao, F

    2001-01-01

    Partial sequences for the 16S rRNA mitochondrial gene were obtained from 10 penaeid shrimp species: Farfantepenaeus paulensis, F. brasiliensis, F. subtilis, F. duorarum, F. aztecus, Litopenaeus schmitti, L. setiferus, and Xiphopenaeus kroyeri from the western Atlantic and L. vannamei and L. stylirostris from the eastern Pacific. Sequences were also obtained from an undescribed morphotype of pink shrimp (morphotype II) usually identified as F. subtilis. The phylogeny resulting from the 16S partial sequences showed that these species form two well-supported monophyletic clades consistent with the two genera proposed in a recent systematic review of the suborder Dendrobranchiata. This contrasted with conclusions drawn from recent molecular phylogenetic work on penaeid shrimps based on partial sequences of the mitochondrial COI region that failed to support recent revisions of the Dendrobranchiata based on morphological analysis. Consistent differences observed in the sequences for morphotype II, coupled with previous allozyme data, support the conclusion that this is a previously undescribed species of Farfantepenaeus. PMID:11161743

  4. Cryptic species of deep-sea clams (Mollusca: Bivalvia: Vesicomyidae) from hydrothermal vent and cold-water seep environments

    Science.gov (United States)

    Vrijenhoek, Robert C.; Schutz, Steven J.; Gustafson, Richard G.; Lutz, Richard A.

    1994-08-01

    A protein-electrophoretic analysis of six putative morphospecies in the bivalve family Vesicomyidae from eight deep-sea hydrothermal vent sites in the eastern Pacific, three cold-water seep sites in the eastern Pacific and the Gulf of Mexico, and one whale-carcass site off Southern California revealed electromorph patterns diagnostic of 10 vesicomyid species. Electrophoretic patterns for 14 enzymes encoded by 17 presumptive gene loci were scored in all 10 species. The pairwise genetic distances (Nei's D) for these 10 species ranged from 0.857 to 2.792, values within the range expected for distinct species and genera. However, the degree of genetic divergence among these taxa could not be used for phylogenetic inferences because allozyme differences had in many cases reached evolutionary saturation. Notwithstanding, the present results revealed a significant problem with current morphospecies identifications of these clams and with applications of the current generic names Calyptogena and Vesicomya. Given the cryptic nature of these taxa, we suggest that subsequent studies simply refer to these clams as "vesicomyids" until careful morphological analyses and molecular studies are completed and systematic relationships are clarified.

  5. Genetic Diversity of Fagopyrum urophyllum Populations in Southwest China%西南地区硬枝野荞麦(Fagopyrum urophyllum)居群的遗传多样性研究

    Institute of Scientific and Technical Information of China (English)

    罗定泽; 侯鑫; 赵佐成

    2001-01-01

    Based on allozyme electrophoresis, the genetic diversity and differe-ntiation among 6 wild populations of Fagopyrum urophyllum from the counties Kunming, Fumin and Binchuan in the north-central part of Yunnan Province, the county Butuo in the southweast part of Sichuan Province, China, were studied in this paper. The results showed that the genetic diversity within wild population was high. The percentage of loci polymorphism (P) was 50.0%, the means of expected and observed heterozygosities were 0.251 and 0.471, respectively. The genetic variation between cultivated buckwheat and wild population was compared.%采用等位酶电泳技术研究了云南省中北部昆明、富民、宾川3县(市)及四川省西南布拖县的硬枝野荞麦(Fagopyrum urophyllum)6个天然居群的遗传多样性和分化。硬枝野荞麦居群内维持有较高的遗传多样性,多态位点比率为50.0%,预期杂合度和观察杂合度分别为0.251和0.471。并对硬枝野荞麦(F. urophyllum)与栽培荞麦之间遗传变异作了比较。

  6. Hybrid male sterility between the fresh- and brackish-water types of ninespine stickleback Pungitius pungitius (Pisces, Gasterosteidae).

    Science.gov (United States)

    Takahashi, Hiroshi; Nagai, Terumi; Goto, Akira

    2005-01-01

    Two ecologically distinct forms, fresh- and brackish-water types, of ninespine stickleback co-exist in several freshwater systems on the coast of eastern Hokkaido. Recent genetic analyses of 13 allozyme loci revealed genetic separation between the two types even though their spawning grounds were in close proximity. On the other hand, there is only a small difference in mitochondrial DNA (mtDNA) sequence between the two types suggesting that they diverged quite recently or that mtDNA introgression occurred between them. To test for postzygotic reproductive isolating mechanisms and hybrid mediated gene flow, we examined the viability and reproductive performance of reciprocal F1 hybrids. The hybrids grew to the adult size normally and both sexes expressed secondary sexual characters in the reciprocal crosses. The female hybrids were reciprocally fertile, while the male hybrids were reciprocally sterile. Histological and flow-cytometric analyses of the hybrid testis revealed that the sterility pattern was classified as 'gametic sterility,' with gonads of normal size but abnormal spermatogenesis. To our knowledge, the present finding is a novel example of one sex hybrid sterility in the stickleback family (Gasterosteidae).

  7. Molecular systematics, phylogeny and ecology of anisakid nematodes of the genus Anisakis Dujardin, 1845: an update

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    Mattiucci S.

    2006-06-01

    Full Text Available Advances in the taxonomy and ecological aspects concerning geographical distribution and hosts of the so far genetically recognised nine taxa of the nematodes belonging to genus Anisakis (i.e. A. pegreffii, A. simplex s.s., A. simplex C, A. typica, A. ziphidarum, Anisakis sp., A. physeteris, A. brevispiculata and A. paggiae are here summarized. Genetic differentiation and phylogenetic relationships inferred from allozyme (20 enzyme-loci and mitochondrial (sequences of cox-2 gene markers, are revised and compared. The two genetic analyses are congruent in depicting their phylogenetic relationships. Two main clusters are showed to exist in the obtained trees, one encompassing the species A. pegreffii, A. simplex s.s., A. simplex C, A. typica, A. ziphidarum and Anisakis sp.; while, the second including A. physeteris, A. brevispiculata and A. paggiae. The existence of two clades is also supported by their morphological differentiation in adult and larval morphology. Comparison of phylogenetic relationships among Anisakis spp. with those currently available for their cetacean definitive hosts suggests parallelism between host and parasite phylogenetic tree topologies. Preliminary data for reconstruction of a possible co-evolutionary scenario between cetacean hosts and their Anisakis endoparasites suggests that cospeciation and host-switching events may have accompanied the evolution of this group of parasites. Finally, genetic/molecular markers for the identification of the so far genetically recognized taxa of Anisakis at any life-stage and both sexes were given also in relation to human anisakiosis is discussed.

  8. Temporal patterns of genetic and phenotypic variation in the epidemiologically important drone fly, Eristalis tenax.

    Science.gov (United States)

    Francuski, Lj; Matić, I; Ludoški, J; Milankov, V

    2011-06-01

    Eristalis tenax L. (Diptera: Syrphidae) is commonly known as the drone fly (adult) or rat-tailed maggot (immature). Both adults and immature stages are identified as potential mechanical vectors of mycobacterial pathogens, and early-stage maggots cause accidental myiasis. We compared four samples from Mount Fruška Gora, Serbia, with the aim of obtaining insights into the temporal variations and sexual dimorphism in the species. This integrative approach was based on allozyme loci, morphometric wing parameters (shape and size) and abdominal colour patterns. Consistent sexual dimorphism was observed, indicating that male specimens had lighter abdomens and smaller and narrower wings than females. The distribution of genetic diversity at polymorphic loci indicated genetic divergence among collection dates. Landmark-based geometric morphometrics revealed, contrary to the lack of divergence in wing size, significant wing shape variation throughout the year. In addition, temporal changes in the frequencies of the abdominal patterns observed are likely to relate to the biology of the species and ecological factors in the locality. Hence, the present study expands our knowledge of the genetic diversity and phenotypic plasticity of E. tenax. The quantification of such variability represents a step towards the evaluation of the adaptive potential of this species of medical and epidemiological importance. PMID:21414022

  9. Metabolic adjustments in Satanoperca aff. jurupari (Perciformes: Cichlidae

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    Chippari-Gomes Adriana R.

    2003-01-01

    Full Text Available In this paper, we describe the enzyme levels and isozyme distribution in skeletal and heart muscle of Satanoperca aff. jurupari, (Cichlidae, subgroup Geophaginae. LDH and CS were measured in skeletal and heart muscle. Starch gel electrophoresis was used to determine the isozyme/allozyme patterns in different tissues; LDH, MDHs, PGM, PGI, ADH, G-6-PDH and SOD were screened for the numbers of loci, presence of alleles, and tissue specificity. The LDH/CS ratio in heart and skeletal muscle were 173.36 and 6.1, respectively, indicating anaerobic metabolism in the former and aerobic metabolism in the latter muscle. No inhibition by pyruvate (based on the ratios of LDH activity with 1 mM and 10 mM pyruvate was detected in heart and skeletal muscle, indicating the presence of physiological plasticity in heart muscle. The heart can cope with anaerobic metabolism for short periods of hypoxia such as occurs in nature. Isozyme patterns for most of the enzymes analyzed were similar to the general patterns for advanced teleosts. S. aff. jurupari had no reduced LDH-B* expression in heart muscle, but the, MDHs-B* locus was duplicated, as reported for most Amazon cichlids species. Only three out of the 13 loci analyzed (PGM, PGI and SOD were variable. These results are consistent with the metabolic profile and life style of the most cichlids. A low genetic variability may be a counterpart for plasticity, and may be guaranteed by the regulation of invariable structural genes.

  10. Estimating the genetic divergence and identification of three trichinella species by isoenzyme analysis

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    Šnábel V.

    2001-06-01

    Full Text Available Isoenzyme-based approach was applied to compare Trichinella spiralis, T. britovi and T. pseudospiralis species. Among 13 enzyme systems examined, esterase (EST, malic enzyme (ME and phosphoglucomutase (PGM have been found as fully diagnostic, with no common allele in species studied. Adenosine deaminase (ADA, adenylate kinase (AK, hexokinase (HK, peptidase leucyl-alanine (PEP-C and fructose-bis-phosphatase (FBP have been capable of distinguishing the two species from resulting profiles. In addition, ADA, AK and PGM displayed the enzyme expression in the lowest amounts of muscle larvae in systems tested ( 100 larvae/100 μl of extracts. Based on allozyme data, T. pseudospiralis has been found as the most distinct species within the group of taxa. Only a subtle genetic variability was recorded for T. pseudospiralisin which solely phosphoglucomutase exhibited variant patterns. In addition to the study of reference isolates, T. spiralis from lowland fox in Eastern Slovakia has been evidenced by use of genetic markers. This finding has proved that T. britovi is not the exclusive species parasitizing in the sylvatic ecosystem of the Slovak region.

  11. First record of Trichinella pseudospiralis in the Slovak Republic found in domestic focus.

    Science.gov (United States)

    Hurníková, Z; Snábel, V; Pozio, E; Reiterová, K; Hrcková, G; Halásová, D; Dubinský, P

    2005-03-10

    Infection of Trichinella spp. is widespread among wildlife in Slovakia and the red fox (Vulpes vulpes) is the main reservoir of Trichinella britovi. Trichinella spiralis has been rarely documented in sylvatic and domestic animals of this country. During routine examination of domestic pigs at the slaughter, Trichinella larvae were detected by artificial digestion in a domestic pig of a large-scale breeding farm in Eastern Slovakia. The parasite has been identified by molecular (PCR) and biochemical (allozymes) analyses and by the morphology of the nurse cell as the non-encapsulated species Trichinella pseudospiralis infecting both mammals and birds. The epidemiological investigation carried out at the farm level revealed the presence of the same parasite species in other three pigs of 192 examined (2.1%), in 3 of 14 (21.4%) examined synanthropic rats (Rattus norvegicus) and in a domestic cat. The farm was characterized by inadequate sanitary conditions, insufficient nutrition, cannibalism and the presence of rat population. A different profile has been observed at the phosphoglucomutase locus in T. pseudospiralis isolates from Slovakia in comparison with the T. pseudospiralis reference isolate from the Palearctic region. This is the first documented focus of T. pseudospiralis from Central Europe. The detection in domestic pigs of a non-encapsulated parasite infecting both mammals and birds stresses the need to avoid the use of trichinelloscopy to detect this infection at the slaughterhouse. PMID:15725537

  12. Phytophthora infestans population structure: a worldwide scale

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    Cárdenas Toquica Martha

    2012-08-01

    Full Text Available Phytophthora infestans, the causal agent of late blight disease in potato and other members of the Solanaceae family, is responsible for causing the Irish potato famine and, even today, it causes enormous economic losses all over the world. For the establishment of an adequate pest management strategy, the determination of population structure is required. To characterize P. infestans populations worldwide two allozymes, Gpi (Glucose-6-phospate isomerase and Pep (Peptidase, the RG57 DNA RFLP fingerprinting probe, as well as resistance to the fungicide metalaxyl and the mating type, have been used as markers. P. infestans populations in Mexico have been one of the main focuses of research in the population biology of this pathogen because this country has been considered as one of the possible centers of origin of this oomycete. In this review we present the population structure of P. infestans in Mexico, Europe, Africa, Asia, North America, and South America expanding on the present situation of P. infestans in Colombia. Finally, we will discuss different lines of research that are being carried out today with respect to P. infestans in Colombia, which have shown the importance of continuing the study of this devastating plant pathogen in our country.

  13. Genetic diversity analysis by RAPD in Cathaya argyrophylla Chun et Kuang

    Institute of Scientific and Technical Information of China (English)

    汪小全; 邹喻苹; 张大明; 洪德元; 刘正宇

    1997-01-01

    Genetic diversity level of Cathaya argyrophylla was confirmed by random amplified polymorphic DNA (RAPD) markers. Seventy five samples (individuals), collected from Hunan and Sichuan provinces of China were used in the study. 21 10-mer oligonucleotide primers detected 106 sites, and 34 (32% ) of them were polymor-phic. The level of genetic variation in C. argyrophylla was lower than those of other conifers, and was considered to be associated with the complexity of habitats. The percentages of polymorphic sites (PPS) in the Hunan and Sichuan pop-ulations were 18% and 25% respectively. 7.99% of genetic variation existed between the two populations; this value was higher than the mean value (6.8%) among populations in conifers displayed by allozyme. Some subpopulations of C. argyrophylla were greatly differentiated because of site mutation and genetic drift. The highest value of genetic dif-ference between subpopulations amounted to 16. 23% . In addition, a concept of diversity coefficient(DC), a value us

  14. Genetic diversity and differentiation of mud crab Scylla serrata populations from southeastern China

    Institute of Scientific and Technical Information of China (English)

    LI Zhongbao; LI Shaojing; WANG Guizhong

    2004-01-01

    The genetic diversity and differentiation of 6 mud crab Scylla serrata populations from southeastern China are investigated using allozyme electrophoresis. The mean number of alleles per locus population is 1.3 ± 0.1; the percentage of polymorphic loci per population is 27.3; the observed heterozygosity ranges from ( 0.195 ± 0.083)to ( 0.241 ± 0.090) and the expected heterozygosity ranges from ( 0.105 ± 0.043 ) to ( 0.131 ± 0.047 ). The coefficient of gene differentiation among populations is low (Fst =0.032), indicating that only 3.2 % of the total genetic diversity comes from inter-population, while the remaining 96.8 % comes from intra-population differences.The genetic distance among populations is 0.000~0.008 (the average is 0.002). Gene flow among the populations is large (Nm= 7.56).Genetic structure is very similar among 6 Scylla serrata populations.

  15. Genetic diversity in Chilean populations of rainbow trout, Oncorhynchus mykiss

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    Claudia B Cárcamo

    2015-03-01

    Full Text Available The rainbow trout Oncorhynchus mykiss, was first introduced in Chile between 1905 and 1920 and is currently widely distributed in Chile from Antofagasta (23°S to Patagonia (55°S. The broad range of the geographic and climatic distributions of this species in Chile offers a unique opportunity to study the effect of naturalization of an introduced species on its genetic variability. It is of particular importance to observe the genetic variability of populations in the northern range of this species distribution, in a transition zone where a Mediterranean-type climate changes to an arid climate. The present study analyzed allozymic variability and distribution within and between populations of O. mykiss from the river basins of Elqui and Limari rivers, and six culture strains, using starch-gel protein electrophoresis. Populations were found to be in Hardy-Weinberg equilibrium and the average values of He (0.045, polymorphism (13.9% and allele per locus (1.19 are similar to rainbow trout in its native distributional range. About 77.8% of the genetic variability was within population, similar to the variability reported for wild populations in the northern hemisphere. However, a marked genetic differentiation between wild populations was also found. This is likely to be the consequence of initial founder effects followed by subsequent introgression of resident populations caused by reseeding with trout of different origins in both basins.

  16. Effects of crossing distance and genetic relatedness on pollen performance in Alstroemeria aurea (Alstroemeriaceae).

    Science.gov (United States)

    Souto, Cintia P; Aizen, Marcelo A; Premoli, Andrea C

    2002-03-01

    Prezygotic barriers may represent effective mechanisms to avoid the deleterious effects of inbreeding. This study reports the existence of distance-dependent prezygotic barriers in self-compatible Alstroemeria aurea, a clonal herb native to temperate forests of the southern Andes. We analyzed pollen germination and tube growth as indicators of donor-recipient affinity using crossing distances of 1, 10, and 100 m. We used allozyme electrophoresis to determine the actual genetic relatedness between donor and recipient ramets. Pollen germination was not affected by distance between mates, but the number of pollen tubes reaching the base of the style increased strongly with distance between donor and recipient. This pattern was related to an increase in genetic dissimilarity with distance between mates. In contrast, pollen tube-style interactions did not change with distance when we restricted analysis to individuals at different distances that appeared to be genetically identical. This test implied genetic dissimilarity as the critical factor affecting pollen performance. We propose that the existence of prezygotic barriers might contribute to the high degree of genetic mixing exhibited by some clonal species. PMID:21665638

  17. Historical ecology meets conservation and evolutionary genetics: a secondary contact zone between Carabus violaceus (Coleoptera, Carabidae populations inhabiting ancient and recent woodlands in north-western Germany

    Directory of Open Access Journals (Sweden)

    Andrea Matern

    2011-05-01

    Full Text Available Only very few cases have documented that an increase in connectivity after a period of fragmentation in ecological time has had an effect on the distribution, genetic structure and morphology of stenotopic species. In this study we present an example of clinal variability in a woodland ground beetle as a result of changes in the connectivity of a landscape during the last two centuries. The study area hosts both the nominate form C. violaceus s. str. and the subspecies C. v. purpurascens, which is ranked as a distinct species by some authors. We studied 12 Carabus violaceus populations from a 30 km transect of ancient and recent forests in north-western Germany. We analyzed three polymorphic enzyme loci, classified the elytron sculpture and measured the shape of the aedeagus tip of the specimens. C. violaceus showed secondary gradients both in allozyme markers and morphometric characters in our study area. A genetic differentiation of 16% between the populations is high but lies within the range of intraspecific variability in habitat specialists of the genus Carabus. Populations had no significant deficit of heterozygotes. We found many hybrid populations in terms of morphological properties. This study highlights the conservation value of ancient woodland and the consequences of landscape connectivity and defragmentation on the genetic setting of a ground beetle. Moreover, it shows that differences in the external shape of male genitalia do not prevent gene flow within the genus Carabus. Thus, the establishment of species status should not exclusively be based on this property.

  18. Genetic differentiation among host-associated Alebra leafhoppers (Hemiptera: Cicadellidae).

    Science.gov (United States)

    Aguin-Pombo, D

    2002-06-01

    The limited importance ascribed to sympatric speciation processes via host race formation is partially due to the few cases of host races that have been reported among host populations. This work sheds light on the taxonomy of Alebra leafhoppers and examines the possible existence of host races among host-associated populations. The species of this genus show varying degrees of host association with deciduous trees and shrubs and, frequently, host populations of uncertain taxonomic status coexist and occasionally become pests. Allozyme electrophoresis of 21 Greek populations including sympatric, local and geographically distant samples collected on 13 different plant species, show that they represent at least five species: A. albostriella Fallén, A. viridis (Rey) (sensu Gillham), A. wahlbergi Boheman and two new species. Of these, one is associated to Quercus frainetto and other is specific to Crataegus spp. Significant genetic differences among sympatric and local host populations were found only in A. albostriella, between populations on Turkey oak, beech and common alder. It is suggested that the last two of these host populations may represent different host races. The results show that both the host plant and geographical distance affect the patterns of differentiation in the genus. The formation of some species seems to have been the result of allopatric speciation events while, for others, their origin can be equally explained either by sympatric or allopatric speciation. PMID:12180082

  19. Spatial genetic structure of Salvia japonica Thunb. population (Labiatae in Botanical Garden of Osaka City University, Kisaichi, Osaka Prefecture, Japan

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    SUDARMONO

    2005-10-01

    Full Text Available Salvia japonica Thunb. (Japan: Aki-no-Tamurasou was a perennial herb, protandry insect-pollinated, and self-incompatible with water-flow dispersed seed. We used allozyme loci to know genetic structure of a S. japonica population. We examined spatial autocorrelation of individuals within five distance class with Moran`s I statistics. The area of observation was in plot 5x5 m2 in Botanical Garden of Osaka City University, Kisaichi, Katano, Osaka Prefecture. The 8 loci examined were polymorphic, namely Aat-1, Aat-2, Pgi, Mnr, Pgm-1, Pgm-2, Idh, and 6-Pgd. Low levels of genetic diversity were found for 29 individuals. Ninety-two percent cases for all of distance class were similar and only 8% (8 of 105 cases were significant differences. This result indicated that the spatial genetic distributions in all of distance classes were all similar and no spatial autocorrelation of genotypes. Only in distance class 2 had one significantly positive cases (0.15 in Pgm-1c, indicating that spatial genetic structure in the study population was weak at most. In the other word that spatial pattern of the individuals within S. japonica population was random. Overall of the result was indicating that genotype among individuals of S. japonica changed distantly and tended to isolation in distance by seed dispersed.

  20. Population genetic structure of Brazilian shrimp species (Farfantepenaeus sp., F. brasiliensis, F. paulensis and Litopenaeus schmitti: Decapoda: Penaeidae

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    Jaqueline Gusmão

    2005-03-01

    Full Text Available Penaeid shrimps are important resources for worldwide fisheries and aquaculture. In the Southwest Atlantic, Farfantepenaeus brasiliensis, F. paulensis, F. subtilis, Farfantepenaeus sp. and Litopenaeus schmitti are among the most important commercially exploited species. Despite their high commercial value, there is little information available on the different aspects of their biology or genetics and almost no data on their stock structure. We used allozymes to estimate variability levels and population genetic structure of F. brasiliensis, F. paulensis, L. schmitti and the recently detected species Farfantepenaeus sp. along as much as 4,000 km of Brazilian coastline. No population heterogeneity was detected in F. brasiliensis or L. schmitti along the studied area. In contrast, F ST values found for Farfantepenaeus sp. and F. paulensis indicate that the populations of those two species are genetically structured, comprising different fishery stocks. The largest genetic differences in F. paulensis were found between Lagoa dos Patos (South and the two populations from Southeast Brazil. In Farfantepenaeus sp., significant differences were detected between the population from Recife and those from Fortaleza and Ilhéus.

  1. Molecular genetic evidence for the place of origin of the Pacific rat, Rattus exulans.

    Science.gov (United States)

    Thomson, Vicki; Aplin, Ken P; Cooper, Alan; Hisheh, Susan; Suzuki, Hitoshi; Maryanto, Ibnu; Yap, Grace; Donnellan, Stephen C

    2014-01-01

    Commensal plants and animals have long been used to track human migrations, with Rattus exulans (the Pacific rat) a common organism for reconstructing Polynesian dispersal in the Pacific. However, with no knowledge of the homeland of R. exulans, the place of origin of this human-commensal relationship is unknown. We conducted a mitochondrial DNA phylogeographic survey of R. exulans diversity across the potential natural range in mainland and Island Southeast Asia in order to establish the origin of this human-commensal dyad. We also conducted allozyme electrophoresis on samples from ISEA to obtain a perspective on patterns of genetic diversity in this critical region. Finally, we compared molecular genetic evidence with knowledge of prehistoric rodent faunas in mainland and ISEA. We find that ISEA populations of R. exulans contain the highest mtDNA lineage diversity including significant haplotype diversity not represented elsewhere in the species range. Within ISEA, the island of Flores in the Lesser Sunda group contains the highest diversity in ISEA (across all loci) and also has a deep fossil record of small mammals that appears to include R. exulans. Therefore, in addition to Flores harboring unusual diversity in the form of Homo floresiensis, dwarfed stegodons and giant rats, this island appears to be the homeland of R. exulans. PMID:24637896

  2. Population structure of a parasitic plant and its perennial host.

    Science.gov (United States)

    Mutikainen, P; Koskela, T

    2002-10-01

    Characterization of host and parasite population genetic structure and estimation of gene flow among populations are essential for the understanding of parasite local adaptation and coevolutionary interactions between hosts and parasites. We examined two aspects of population structure in a parasitic plant, the greater dodder (Cuscuta europaea) and its host plant, the stinging nettle (Urtica dioica), using allozyme data from 12 host and eight parasite populations. First, we examined whether hosts exposed to parasitism in the past contain higher levels of genetic variation. Second, we examined whether host and parasite populations differ in terms of population structure and if their population structures are correlated. There was no evidence that host populations differed in terms of gene diversity or heterozygosity according to their history of parasitism. Host populations were genetically more differentiated (F(ST) = 0.032) than parasite populations (F(ST) = 0.009). Based on these F(ST) values, gene flow was high for both host and parasite. Such high levels of gene flow could counteract selection for local adaptation of the parasite. We found no significant correlation between geographic and genetic distance (estimated as pairwise F(ST)), either for the host or for the parasite. Furthermore, host and parasite genetic distance matrices were uncorrelated, suggesting that sites with genetically similar host populations are unlikely to have genetically similar parasite populations. PMID:12242649

  3. Identificação de espécies de citros mediante polimorfismo enzimático Identification of citrus species by means of enzymatic polymorphism

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    Haiko Enok Sawazaki

    1992-01-01

    isocitrate dehydrogenase (IDH. Interespecific differences were observed; but, none between intraespecific C. sinensis cultivars. Some allozymes were observed in addition to those reffered in the literature on starch gel; e.g., allozymes located next to the known Pgm-1 loci. The PGM system revealed the best differentiation between the cultivars. It showed monomeric proteins and 9 alleles. The MDH system had two loci with 7 alleles; the ME system one locus with 3 alleles; the LAP system one possible locus next to the known Lap-1 and 4 alleles; the GOT two loci for dimeric proteins with 7 alleles; the PGI one locus with 3 alleles; and, the IDH one locus with 4 alleles.

  4. Preliminary analysis of population genetics of Myotis punicus (Chiroptera: Vespertilionidae in the maltese islands: implications for its conservation

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    Byron Baron

    2010-08-01

    Full Text Available By combining cellulose acetate allozyme electrophoresis with a non-lethal sampling technique, it was possible to undertake a preliminary study of the population structure of Myotis punicus Felten, 1977 in the Maltese Islands. Since previous local ecological studies indicated declining numbers, it was considered important to undertake a combinatorial study including molecular genetic techniques. Twelve sites spread around the Maltese Islands were investigated and a total of 36 individuals found in four of these sites were sampled over a period of 6 months. The use of 4mm biopsy punches (a non-lethal method was adopted to obtain tissue for analysis. Morphometric data was also collected involving measurements of forearm length, ear length, tragus length, wing-span and weight. Comparison of average values for these measurements between the sexes (using chi-square at p = 0.05 gave an indication of sexual dimorphism, with females being the larger sex. A recapture rate of 19% was achieved in this study. Nei’s (1978 Genetic Identity (I showed values from 0.954 to 0.686, while Genetic Distance (D values ranged from 0 to 0.047. The results obtained in this study indicate that the population on the Maltese Islands is as yet a single panmictic unit, even though the overall FST value of 0.272 indicates that these sites are approaching the threshold beyond which there will be isolated mating systems.

    doi:10.4404/hystrix-21.1-4453

  5. Genetic studies of freshwater turtle and tortoises: a review of the past 70 years

    Science.gov (United States)

    FitzSimmons, Nancy N.; Hart, Kristen M.

    2007-01-01

    Powerful molecular techniques have been developed over many decades for resolving genetic relationships, population genetic structure, patterns of gene flow, mating systems, and the amount of genetic diversity in animals. Genetic studies of turtles were among the earliest and the rapid application of new genetic tools and analytical techniques is still apparent in the literature on turtles. At present, of the 198 freshwater turtles and tortoises that are listed as not extinct by the IUCN Red List, 69 species worldwide are listed as endangered or critically endangered, and an additional 56 species are listed as vulnerable. Of the ca. 300 species of the freshwater turtles and tortoises in the world, ca. 42% are considered to be facing a high risk extinction, and there is a need to focus intense conservation attention on these species. This includes a need to (i) assess our current state of knowledge regarding the application of genetics to studies of freshwater turtles and tortoises and (ii) determine future research directions. Here, we review all available published studies for the past 70 years that were written in English and used genetic markers (e.g. karyotypes, allozymes, DNA loci) to better understand the biology of freshwater turtles and tortoises. We review the types of studies conducted in relation to the species studied and quantify the countries where the studies were performed. We rack the changing use of different genetic markers through time and report on studies focused on aspects of molecular evolution within turtle genomes. We address the usefulness of particular genetic markers to answer phylogenetic questions and present data comparing population genetic structure and mating systems across species. We draw specific attention to whether authors have considered issues to turtle conservation in their research or provided new insights that have been translated into recommendations for conservation management.

  6. Genetic evaluation of seeds of highly endangered Pinus uliginosa Neumann from Węgliniec reserve for ex-situ conservation program

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    Andrzej Lewandowski

    2011-04-01

    Full Text Available Peat-bog pine Pinus uliginosa Neumann has become extinct or rare in many parts of Europe. We have investigated the levels of genetic variation and inbreeding in seeds collected from a highly endangered reserve of this species in Poland, using allozymes as genetic markers. Generally, a high level of genetic variation was observed. The mean expected heterozygosity was 0.376, while average (Na and effective (Ne numbers of alleles per locus were 2.45 and 1.67, respectively. Nevertheless, we have detected relatively low levels of outcrossing, and potential biparental inbreeding. The population-wide multilocus outcrossing rate was estimated to be 0.706 (±0.091, while the minimum variance mean of single-locus estimates was distinctly lower (ts=0.611. The estimates of outcrossing calculated for individual trees ranged widely from 0.051 to 1.017, indicating the complexity of outcrossing patterns. The investigated population of P. uliginasa from Węgliniec is small and surrounded by extensive forest stands of P. sylvestris. Our three-year records of phenological observations demonstrated that flowering periods for P. uliginosa and P. sylvestris overlap, allowing for cross-pollination. The possibility of P. uliginosa pollination by P. sylvestris creates a potential danger of genetic erosion of the P. uliginosa gene pool. Nonetheless, based on a species specific cpDNA marker we have found that among 533 seedlings of P. uliginosa there were only six seedlings carrying cpDNA marker specific for P. sylvestris, indicating that such hybridization seems to be rare.

  7. Genetic ecotoxicology of radionuclides in mosquitofish: The relationship between DNA strand breaks and genotype

    Energy Technology Data Exchange (ETDEWEB)

    Theodorakis, C.W.; Shugart, L.R. [Oak Ridge National Lab., TN (United States)

    1995-12-31

    DNA polymorphisms revealed by RAPD (Randomly Amplified Polymorphic DNA) and allozyme analysis were compared to relative amounts of DNA strand breakage, determined by gel electrophoresis, in mosquitofish (Gambusia affinis). The fish examined were from three different experiments, as follows : (1) fish collected from a radioactively contaminated pond; (2) fish collected from a non-radioactively contaminated pond and exposed to X-rays in the laboratory; and (3) fish collected from a non-radioactively contaminated pond and caged in a radioactive or non-radioactive pond. The types of RAPD metrics used were number of bands per individual and frequency of certain bands. It was found in a previous study that in some instances the number of bands and the frequency of certain bands in the population were elevated in radionuclide-contaminated sites relative to reference sites. In several cases, the median molecular length (MML) of the DNA (which is inversely proportional to the amount of strand breakage) was correlated to the number of bands per individual. Also, for bands which had a higher population frequency in contaminated sites, the MML in many cases was higher for fish with than without these bands. Results from laboratory X-ray exposures paralleled those from the field. In the caging study, 9 out of the original 30 caged fish survived in the radioactive pond, whereas 27 fish survived in the non-radioactive cage. In the radioactive cage the genotypic distribution of the survivors was more similar to the indigenous radioactive population than to the population of origin. When the relative amount of DNA strand breakage was compared to the genotype of each survivor, the patterns were similar to those found in the field collection and laboratory studies.

  8. Comparative genetic structure between Sedum ussuriense and S. kamtschaticum (Crassulaceae), two stonecrops co-occurring on rocky cliffs.

    Science.gov (United States)

    Chung, Mi Yoon; López-Pujol, Jordi; Chung, Myong Gi

    2014-06-01

    • Premise of the study: Geographic isolation due to discontinuities of suitable habitat may have significant effects on the genetic structure of plant populations. Even within a few kilometers, physical barriers to gene flow may lead to considerable genetic differentiation among populations.• Methods: Sedum ussuriense is a boreal species that in Korea occurs only in four valleys separated by mountain ranges in Juwangsan National Park and its vicinity (a range of ∼15 km). Its congener S. kamtschaticum, by contrast, co-occurs in the four valleys but also on the intervening mountains. Using 12 allozyme loci, we comparatively assessed genetic variability and structure in 12 population pairs of the two stonecrops.• Key results: While we found high and comparable levels of within-population genetic variation for the two species, among-population divergence was significantly higher in S. ussuriense (FST = 0.261 vs. FST = 0.165). Sedum ussuriense also showed a much higher percentage of among-valley variation (19%) than S. kamtschaticum (4%).• Conclusions: High levels of genetic diversity in the two Sedum species are consistent with the previous hypothesis that mountains of the Korean Peninsula served as glacial refugia for many boreal species. Given that the two congeners have similar life-history traits, the lower among-population differentiation in S. kamtschaticum is attributable to its higher abundance and more continuous distribution in the study area. This study confirms the central role of geographic isolation in the genetic structure of plant species even at very small scales. PMID:24907251

  9. Evolutionary factors affecting Lactate dehydrogenase A and B variation in the Daphnia pulex species complex

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    Cristescu Melania E

    2011-07-01

    Full Text Available Abstract Background Evidence for historical, demographic and selective factors affecting enzyme evolution can be obtained by examining nucleotide sequence variation in candidate genes such as Lactate dehydrogenase (Ldh. Two closely related Daphnia species can be distinguished by their electrophoretic Ldh genotype and habitat. Daphnia pulex populations are fixed for the S allele and inhabit temporary ponds, while D. pulicaria populations are fixed for the F allele and inhabit large stratified lakes. One locus is detected in most allozyme surveys, but genome sequencing has revealed two genes, LdhA and LdhB. Results We sequenced both Ldh genes from 70 isolates of these two species from North America to determine if the association between Ldh genotype and habitat shows evidence for selection, and to elucidate the evolutionary history of the two genes. We found that alleles in the pond-dwelling D. pulex and in the lake-dwelling D. pulicaria form distinct groups at both loci, and the substitution of Glutamine (S for Glutamic acid (F at amino acid 229 likely causes the electrophoretic mobility shift in the LDHA protein. Nucleotide diversity in both Ldh genes is much lower in D. pulicaria than in D. pulex. Moreover, the lack of spatial structuring of the variation in both genes over a wide geographic area is consistent with a recent demographic expansion of lake populations. Neutrality tests indicate that both genes are under purifying selection, but the intensity is much stronger on LdhA. Conclusions Although lake-dwelling D. pulicaria hybridizes with the other lineages in the pulex species complex, it remains distinct ecologically and genetically. This ecological divergence, coupled with the intensity of purifying selection on LdhA and the strong association between its genotype and habitat, suggests that experimental studies would be useful to determine if variation in molecular function provides evidence that LDHA variants are adaptive.

  10. Structural Basis of Substrate Recognition in Thiopurine S-Methyltransferase

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    Peng, Yi; Feng, Qiping; Wilk, Dennis; Adjei, Araba A.; Salavaggione, Oreste E.; Weinshilboum, Richard M.; Yee, Vivien C. (Case Western); (MCCM)

    2008-09-23

    Thiopurine S-methyltransferase (TPMT) modulates the cytotoxic effects of thiopurine prodrugs such as 6-mercaptopurine by methylating them in a reaction using S-adenosyl-l-methionine as the donor. Patients with TPMT variant allozymes exhibit diminished levels of protein and/or enzyme activity and are at risk for thiopurine drug-induced toxicity. We have determined two crystal structures of murine TPMT, as a binary complex with the product S-adenosyl-l-homocysteine and as a ternary complex with S-adenosyl-l-homocysteine and the substrate 6-mercaptopurine, to 1.8 and 2.0 {angstrom} resolution, respectively. Comparison of the structures reveals that an active site loop becomes ordered upon 6-mercaptopurine binding. The positions of the two ligands are consistent with the expected S{sub N}2 reaction mechanism. Arg147 and Arg221, the only polar amino acids near 6-mercaptopurine, are highlighted as possible participants in substrate deprotonation. To probe whether these residues are important for catalysis, point mutants were prepared in the human enzyme. Substitution of Arg152 (Arg147 in murine TPMT) with glutamic acid decreases V{sub max} and increases K{sub m} for 6-mercaptopurine but not K{sub m} for S-adenosyl-l-methionine. Substitution at this position with alanine or histidine and similar substitutions of Arg226 (Arg221 in murine TPMT) result in no effect on enzyme activity. The double mutant Arg152Ala/Arg226Ala exhibits a decreased V{sub max} and increased K{sub m} for 6-mercaptopurine. These observations suggest that either Arg152 or Arg226 may participate in some fashion in the TPMT reaction, with one residue compensating when the other is altered, and that Arg152 may interact with substrate more directly than Arg226, consistent with observations in the murine TPMT crystal structure.

  11. Population genetic differences along a latitudinal cline between original and recently colonized habitat in a butterfly.

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    Sofie Vandewoestijne

    Full Text Available BACKGROUND: Past and current range or spatial expansions have important consequences on population genetic structure. Habitat-use expansion, i.e. changing habitat associations, may also influence genetic population parameters, but has been less studied. Here we examined the genetic population structure of a Palaeartic woodland butterfly Pararge aegeria (Nymphalidae which has recently colonized agricultural landscapes in NW-Europe. Butterflies from woodland and agricultural landscapes differ in several phenotypic traits (including morphology, behavior and life history. We investigated whether phenotypic divergence is accompanied by genetic divergence between populations of different landscapes along a 700 km latitudinal gradient. METHODOLOGY/PRINCIPAL FINDINGS: Populations (23 along the latitudinal gradient in both landscape types were analyzed using microsatellite and allozyme markers. A general decrease in genetic diversity with latitude was detected, likely due to post-glacial colonization effects. Contrary to expectations, agricultural landscapes were not less diverse and no significant bottlenecks were detected. Nonetheless, a genetic signature of recent colonization is reflected in the absence of clinal genetic differentiation within the agricultural landscape, significantly lower gene flow between agricultural populations (3.494 than between woodland populations (4.183, and significantly higher genetic differentiation between agricultural (0.050 than woodland (0.034 pairwise comparisons, likely due to multiple founder events. Globally, the genetic data suggest multiple long distance dispersal/colonization events and subsequent high intra- and inter-landscape gene flow in this species. Phosphoglucomutase deviated from other enzymes and microsatellite markers, and hence may be under selection along the latitudinal gradient but not between landscape types. Phenotypic divergence was greater than genetic divergence, indicating directional

  12. Gene flow rise with habitat fragmentation in the bog fritillary butterfly (Lepidoptera: Nymphalidae

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    Descimon Henri

    2008-03-01

    Full Text Available Abstract Background The main components of the spatial genetic structure of the populations are neighbourhood size and isolation by distance. These may be inferred from the allele frequencies across a series of populations within a region. Here, the spatial population structure of Proclossiana eunomia was investigated in two mountainous areas of southern Europe (Asturias, Spain and Pyrenees, France and in two areas of intermediate elevation (Morvan, France and Ardennes, Belgium. Results A total of eight polymorphic loci were scored by allozyme electrophoresis, revealing a higher polymorphism in the populations of southern Europe than in those of central Europe. Isolation by distance effect was much stronger in the two mountain ranges (Pyrenees and Asturias than in the two areas of lower elevation (Ardennes and Morvan. By contrast, the neighbourhood size estimates were smaller in the Ardennes and in the Morvan than in the two high mountain areas, indicating more common movements between neighbouring patches in the mountains than in plains. Conclusion Short and long dispersal events are two phenomena with distinct consequences in the population genetics of natural populations. The differences in level of population differentiation within each the four regions may be explained by change in dispersal in lowland recently fragmented landscapes: on average, butterflies disperse to a shorter distance but the few ones which disperse long distance do so more efficiently. Habitat fragmentation has evolutionary consequences exceeding by far the selection of dispersal related traits: the balance between local specialisation and gene flow would be perturbed, which would modify the extent to which populations are adapted to heterogeneous environments.

  13. Gene frequency distributions of Anthoxanthum alpinum along the altitudinal gradients in Swiss Alps%阿尔卑斯山黄花茅(Anthoxanthum alpinum)沿海拔梯度的基因频率分布

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    在瑞士阿尔卑斯山的2个定点样地,黄花茅从森林线(海拔1700 m)到山顶(海拔2830 m)呈连续分布.在海拔梯度样带的最高和最低定样场所间的垂直距离差不多为1000 m,但2个定样场所间相距仅仅1.4 km.在所研究的3个海拔梯度样带中,3个同工酶位点(Px-1, Got-2和 Mdh-1)被观察到有统计意义的倾群变异.研究结果显示:沿海拔梯度样带的亚居群间的基因流可能太弱不足以克服自然选择的影响,后者促使对局部环境的适应.在这种情况下,温度因子至少可能作为一种主要的自然选择力起作用.%Anthoxanthum alpinum has a continuous distribution from the treeline (1700 m) to the summit ridges (2830 m) in Arpette and Belalp of Valais, Swiss Alps. The highest and lowest sites of the transect differ by almost 1000 m in elevation, but only an average of 1.4 km apart. A significant clinal variation was observed at three allozyme loci (Px-1, Got-2 and Mdh-1) on all three transects. It suggests that gene flow among sub-populations may be too weak to overcome the effects of natural selection in favor of adaptations to local conditions, and that temperature variables may function as major selective force in this case.

  14. Mitochondrial DNA indicates late pleistocene divergence of populations of Heteronympha merope, an emerging model in environmental change biology.

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    Melanie Norgate

    Full Text Available Knowledge of historical changes in species range distribution provides context for investigating adaptive potential and dispersal ability. This is valuable for predicting the potential impact of environmental change on species of interest. Butterflies are one of the most important taxa for studying such impacts, and Heteronympha merope has the potential to provide a particularly valuable model, in part due to the existence of historical data on morphological traits and glycolytic enzyme variation. This study investigates the population genetic structure and phylogeography of H. merope, comparing the relative resolution achieved through partial DNA sequences of two mitochondrial loci, COI and ND5. These data are used to define the relationship between subspecies, showing that the subspecies are reciprocally monophyletic. On this basis, the Western Australian subspecies H. m. duboulayi is genetically distinct from the two eastern subspecies. Throughout the eastern part of the range, levels of migration and the timing of key population splits of potential relevance to climatic adaptation are estimated and indicate Late Pleistocene divergence both of the Tasmanian subspecies and of an isolated northern population from the eastern mainland subspecies H. m. merope. This information is then used to revisit historical data and provides support for the importance of clinal variation in wing characters, as well as evidence for selective pressure acting on allozyme loci phosphoglucose isomerase and phosphoglucomutase in H. merope. The study has thus confirmed the value of H. merope as a model organism for measuring responses to environmental change, offering the opportunity to focus on isolated populations, as well as a latitudinal gradient, and to use historical changes to test the accuracy of predictions for the future.

  15. Dual African origins of global Aedes aegypti s.l. populations revealed by mitochondrial DNA.

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    Michelle Moore

    Full Text Available BACKGROUND: Aedes aegypti is the primary global vector to humans of yellow fever and dengue flaviviruses. Over the past 50 years, many population genetic studies have documented large genetic differences among global populations of this species. These studies initially used morphological polymorphisms, followed later by allozymes, and most recently various molecular genetic markers including microsatellites and mitochondrial markers. In particular, since 2000, fourteen publications and four unpublished datasets have used sequence data from the NADH dehydrogenase subunit 4 mitochondrial gene to compare Ae. aegypti collections and collectively 95 unique mtDNA haplotypes have been found. Phylogenetic analyses in these many studies consistently resolved two clades but no comprehensive study of mtDNA haplotypes have been made in Africa, the continent in which the species originated. METHODS AND FINDINGS: ND4 haplotypes were sequenced in 426 Ae. aegypti s.l. from Senegal, West Africa and Kenya, East Africa. In Senegal 15 and in Kenya 7 new haplotypes were discovered. When added to the 95 published haplotypes and including 6 African Aedes species as outgroups, phylogenetic analyses showed that all but one Senegal haplotype occurred in a basal clade while most East African haplotypes occurred in a second clade arising from the basal clade. Globally distributed haplotypes occurred in both clades demonstrating that populations outside Africa consist of mixtures of mosquitoes from both clades. CONCLUSIONS: Populations of Ae. aegypti outside Africa consist of mosquitoes arising from one of two ancestral clades. One clade is basal and primarily associated with West Africa while the second arises from the first and contains primarily mosquitoes from East Africa.

  16. Genetic variability in Astyanax altiparanae Garutti & Britski, 2000 (Teleostei, Characidae from the Upper Paraná River basin, Brazil

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    Maria Dolores Peres

    2005-12-01

    Full Text Available Allozyme data was used to assess the genetic diversity Astyanax altiparanae populations from the floodplain of the Upper Paraná River (PR. Specimens were collected in the southern Brazilian state of Paraná from PR in Porto Rico municipality and Ribeirão Ficha (RF in Ubiratã municipality. The authors used 15% (w/v corn starch gel electrophoresis to identify 21 putative loci for 13 enzymatic systems: Aspartate aminotransferase, 2.6.1.1 (AAT, Acid phosphatase, 3.1.3.2 (ACP, Esterase, 3.1.1.1 (EST, Glycerol-3-phosphate dehydrogenase, 1.1.1.8 (G3PDH, Glucose-6-phosphate dehydrogenase, 1.1.1.49 (G6PDH, Glucose-6-phosphate isomerase, 5.3.1.9 (GPI, Iditol dehydrogenase, 1.1.1.14 (IDDH, Isocitrate dehydrogenase - NADP+, 1.1.1.42 (IDH, L-Lactate dehydrogenase, 1.1.1.27 (LDH, Malate dehydrogenase, 1.1.1.37 (MDH, Malate dehydrogenase - NADP+, 1.1.1.40 (MDHP, Phosphoglucomutase, 5.4.2.2 (PGM, and Superoxide dismutase, 1.15.1.1 (SOD. The proportion of polymorphic loci were estimated as 52.38% in the PR population and 38.10% in the RF population. Expected estimated heterozygosities were 0.1518 ± 0.0493 for the PR population and 0.0905 ± 0.0464 for the RF population. The A. altiparanae heterozygosity data were similar to previous estimates for other PR basin characid species. Allele frequencies were significantly different between the PR and RF populations in respect to some loci (Acp-1, G3pdh-1, Gpi-A, Iddh-1, Mdhp-1 and Mdhp-2. Wright’s statistics for all loci were estimated as Fis = 0.3919, Fit = 0.4804 and Fst = 0.1455. Our results show that the A. altiparanae populations studied are genetically different and have a high degree of genetic variability.

  17. Molecular identification key based on PCR/RFLP for three polychaete sibling species of the genus Marenzelleria, and the species' current distribution in the Baltic Sea

    Science.gov (United States)

    Blank, M.; Laine, A. O.; Jürss, K.; Bastrop, R.

    2008-06-01

    Studies of Marenzelleria species were often hampered by identification uncertainties when using morphological characters only. A newly developed PCR/RFLP protocol allows a more efficient discrimination of the three species Marenzelleria viridis, Marenzelleria neglecta and Marenzelleria arctia currently known for the Baltic Sea. The protocol is based on PCR amplification of two mitochondrial DNA gene segments (16S, COI) followed by digestion with restriction enzymes. As it is faster and cheaper than PCR/sequencing protocols used so far, the protocol is recommended for large-scale analyses. The markers allow an undoubted determination of species irrespective of life stage or condition of the worms in the samples. The protocol was validated on about 950 specimens sampled at more than 30 sites of the Baltic and the North Sea, and on specimens from populations of the North American east coast. Besides this test we used mitochondrial DNA sequences (16S, COI, Cytb) and starch gel electrophoresis to further investigate the distribution of the three Marenzelleria species in the Baltic Sea. The results show that M. viridis (formerly genetic type I or M. cf. wireni) occurred in the Öresund area, in the south western as well as in the eastern Baltic Sea, where it is found sympatric with M. neglecta. Allozyme electrophoresis indicated an introduction by range expansion from the North Sea. The second species, M. arctia, was only found in the northern Baltic Sea, where it sometimes occurred sympatric with M. neglecta or M. viridis. For Baltic M. arctia, the most probable way of introduction is by ship ballast water from the European Arctic. There is an urgent need for a new genetic analysis of all Marenzelleria populations of the Baltic Sea to unravel the current distribution of the three species.

  18. Combined RAPD and RFLP molecular linkage map of asparagus.

    Science.gov (United States)

    Jiang, C; Lewis, M E; Sink, K C

    1997-02-01

    Two linkage maps of asparagus (Asparagus officinalis L.) were constructed using a double pseudotestcross mapping strategy with restriction fragment length polymorphisms (RFLPs), random amplified polymorphic DNAs (RAPDs), and allozymes as markers in a population generated from crossing MW25 x A19, two heterozygous parents. All data were inverted and combined with the natural data to detect linkages in repulsion phase. Two sets of data, one for each parent, were formed according to the inheritance patterns of the markers. The maternal MW25 map has a total of 163 marker loci placed in 13 linkage groups covering 1281 cM, with an average and a maximum distance between adjacent loci of 7.9 and 29 cM, respectively. The paternal A19 map has 183 marker loci covering 1324 cM in 9 linkage groups, with an average and a maximum distance between two adjacent loci of 7.7 and 29 cM, respectively. Six multiallelic RFLPs segregating in the pattern a/c x b/c and eight heterozygous loci (four RAPDs, and four RFLPs segregating in the pattern a/b x a/b (HZ loci)) were common to both maps. These 14 loci were used as bridges to align homologous groups between the two maps. In this case, RFLPs were more frequent and informative than RAPDs. Nine linkage groups in the MW25 map were homologous to six groups in the A19 map. In two cases, two or more bridge loci were common to a group; thus, the orientation of homologous linkage groups was also determined. In four other cases, only one locus was common to the two homologous groups and the orientation was unknown. Mdh, four RFLPs, and 14 RAPDs were assigned to chromosome L5, which also has the sex locus M. PMID:18464808

  19. Hybridization in the Ensatina Ring Species, Strong selection against hybrids at a hybrid zone in the ensatina ring species complex and its evolutionary implications

    Energy Technology Data Exchange (ETDEWEB)

    Alexandrino, Joao; Baird, Stuart J.E.; Lawson, Lucinda; Macey, J. Robert; Moritz, Craig; Wake, David B.

    2005-04-22

    The analysis of interactions between lineages at varying levels of genetic divergence can provide insights into the process of speciation through the accumulation of incompatible mutations. Ring species, and especially the Ensatina eschscholtzii system exemplify this approach. The plethodontid salamanders Ensatina eschscholtzii xanthoptica and Ensatina eschscholtzii platensis hybridize in the Central Sierran foothills of California. We compared the genetic structure across two transects (southern and northern Calaveras Co.), one of which was re-sampled over 20 years, and examined diagnostic molecular markers (eight allozyme loci and mitochondrial DNA) and a diagnostic quantitative trait (color pattern). Key results across all studies were: (i) cline centers for all markers were coincident and the zones were narrow, with width estimates of 730m to 2000m; (ii) cline centers at the northern Calaveras transect were coincident between 1981 and 2001, demonstrating repeatability over 5 generations; (iii) there are very few if any putative F1's, but a relatively high number of backcrossed individuals (57-86 percent) in the central portion of transects; (iv) we found substantial linkage disequilibrium in all three studies and strong heterozygote deficit both in northern Calaveras, in 2001, and southern Calaveras. Both linkage disequilibrium and heterozygote deficit show maximum values near the center of the zones (R and Fis, approx. equal to 0.5). Using estimates of cline width and dispersal, we infer strong selection against hybrids (s* approx. equal to 46-75 percent). This is sufficient to promote accumulation of differences at loci that are neutral or under divergent selection, but would still allow for introgression of adaptive alleles. The evidence for strong, but incomplete isolation across this centrally located contact is consistent with theory suggesting a gradual increase in postzygotic incompatibility between allopatric populations subject to divergent

  20. Population Genomics of the Euryhaline Teleost Poecilia latipinna.

    Science.gov (United States)

    Nunez, J C B; Seale, T P; Fraser, M A; Burton, T L; Fortson, T N; Hoover, D; Travis, J; Oleksiak, M F; Crawford, D L

    2015-01-01

    Global climate change and increases in sea levels will affect coastal marine communities. The conservation of these ecologically important areas will be a challenge because of their wide geographic distribution, ecological diversity and species richness. To address this problem, we need to better understand how the genetic variation of the species in these communities is distributed within local populations, among populations and between distant regions. In this study we apply genotyping by sequencing (GBS) and examine 955 SNPs to determine Sailfin molly (Poecilia latipinna) genetic diversity among three geographically close mangrove salt marsh flats in the Florida Keys compared to populations in southern and northern Florida. The questions we are asking are whether there is sufficient genetic variation among isolated estuarine fish within populations and whether there are significant divergences among populations. Additionally, we want to know if GBS approaches agree with previous studies using more traditional molecular approaches. We are able to identify large genetic diversity within each saltmarsh community (π ≈ 36%). Additionally, among the Florida Key populations and the mainland or between southern and northern Florida regions, there are significant differences in allele frequencies seen in population structure and evolutionary relationships among individuals. Surprisingly, even though the cumulative FST value using all 955 SNPs within the three Florida Key populations is small, there are 29 loci with significant FST values, and 11 of these were outliers suggestive of adaptive divergence. These data suggest that among the salt marsh flats surveyed here, there is significant genetic diversity within each population and small but significant differences among populations. Much of the genetic variation within and among populations found here with GBS is very similar to previous studies using allozymes and microsatellites. However, the meaningful difference

  1. Population Genomics of the Euryhaline Teleost Poecilia latipinna.

    Directory of Open Access Journals (Sweden)

    J C B Nunez

    Full Text Available Global climate change and increases in sea levels will affect coastal marine communities. The conservation of these ecologically important areas will be a challenge because of their wide geographic distribution, ecological diversity and species richness. To address this problem, we need to better understand how the genetic variation of the species in these communities is distributed within local populations, among populations and between distant regions. In this study we apply genotyping by sequencing (GBS and examine 955 SNPs to determine Sailfin molly (Poecilia latipinna genetic diversity among three geographically close mangrove salt marsh flats in the Florida Keys compared to populations in southern and northern Florida. The questions we are asking are whether there is sufficient genetic variation among isolated estuarine fish within populations and whether there are significant divergences among populations. Additionally, we want to know if GBS approaches agree with previous studies using more traditional molecular approaches. We are able to identify large genetic diversity within each saltmarsh community (π ≈ 36%. Additionally, among the Florida Key populations and the mainland or between southern and northern Florida regions, there are significant differences in allele frequencies seen in population structure and evolutionary relationships among individuals. Surprisingly, even though the cumulative FST value using all 955 SNPs within the three Florida Key populations is small, there are 29 loci with significant FST values, and 11 of these were outliers suggestive of adaptive divergence. These data suggest that among the salt marsh flats surveyed here, there is significant genetic diversity within each population and small but significant differences among populations. Much of the genetic variation within and among populations found here with GBS is very similar to previous studies using allozymes and microsatellites. However, the

  2. Transformer-4 version 2.0.1, a free multi-platform software to quickly reformat genotype matrices of any marker type, and archive them in the Demiurge information system.

    Science.gov (United States)

    Caujapé-Castells, Juli; Sabbagh, Izzat; Castellano, José J; Ramos, Rafael; Henríquez, Víctor; Quintana, Francisco M; Medina, Dailos A; Toledo, Javier; Ramírez, Fernando; Rodríguez, Juan F

    2013-05-01

    Transformer-4 version 2.0.1 (T4) is a multi-platform freeware programmed in java that can transform a genotype matrix in Excel or XML format into the input formats of one or several of the most commonly used population genetic software, for any possible combination of the populations that the matrix contains. T4 also allows the users to (i) draw allozyme gel interpretations for any number of diploid individuals, and then generate a genotype matrix ready to be used by T4; and (ii) produce basic reports about the data in the matrices. Furthermore, T4 is the only way to optionally submit 'genetic diversity digests' for publication in the Demiurge online information system (http://www.demiurge-project.org). Each such digest undergoes peer-review, and it consists of a geo-referenced data matrix in the tfm4 format plus any ancillary document or hyperlink that the digest authors see fit to include. The complementarity between T4 and Demiurge facilitates a free, safe, permanent, and standardized data archival and analysis system for researchers, and may also be a convenient resource for scientific journals, public administrations, or higher educators. T4 and its converters are freely available (at, respectively, http://www.demiurge-project.org/download_t4 and http://www.demiurge-project.org/converterstore) upon registration in the Demiurge information system (http://demiurge-project.org/register). Users have to click on the link provided on an account validation email, and accept Demiurge's terms of use (see http://www.demiurge-project.org/termsofuse). A thorough user's guide is available within T4. A 3-min promotional video about T4 and Demiurge can be seen at http://vimeo.com/29828406.

  3. Repeated landmass reformation limits diversification in the widespread littoral zone mosquito Anopheles sundaicus sensu lato in the Indo-Oriental Region.

    Science.gov (United States)

    Zarowiecki, Magdalena; Linton, Yvonne-Marie; Post, Rory J; Bangs, Michael J; Htun, Pe Than; Hlaing, Thaung; Seng, Chang Moh; Baimai, Visut; Ding, Trung Ho; Sochantha, Tho; Walton, Catherine

    2014-05-01

    Southeast Asia harbours abundant biodiversity, hypothesized to have been generated by Pliocene and Pleistocene climatic and environmental change. Vicariance between the island of Borneo, the remaining Indonesian archipelago and mainland Southeast Asia caused by elevated sea levels during interglacial periods has been proposed to lead to diversification in the littoral zone mosquito Anopheles (Cellia) sundaicus (Rodenwaldt) sensu lato. To test this biogeographical hypothesis, we inferred the population history and assessed gene flow of A. sundaicus s.l. sampled from 18 populations across its pan-Asian species range, using sequences from mitochondrial cytochrome c oxidase subunit 1 (CO1), the internal transcribed spacer 2 (ITS2) and the mannose phosphate isomerase (Mpi) gene. A hypothesis of ecological speciation for A. sundaicus involving divergent adaptation to brackish and freshwater larval habitats was also previously proposed, based on a deficiency of heterozygotes for Mpi allozyme alleles in sympatry. This hypothesis was not supported by Mpi sequence data, which exhibited no fixed differences between brackish and freshwater larval habitats. Mpi and CO1 supported the presence of up to eight genetically distinct population groupings. Counter to the hypothesis of three allopatric species, divergence was often no greater between Borneo, Sumatra/Java and the Southeast Asian mainland than it was between genetic groupings within these landmasses. An isolation-with-migration (IM) model indicates recurrent gene flow between the current major landmasses. Such gene flow would have been possible during glacial periods when the current landmasses merged, presenting opportunities for dispersal along expanding and contracting coastlines. Consequently, Pleistocene climatic variation has proved a homogenizing, rather than diversifying, force for A. sundaicus diversity. PMID:24750501

  4. Genetic diversity of Norway spruce [Picea abies (L. Karst.] in Romanian Carpathians

    Directory of Open Access Journals (Sweden)

    Raul Gheorghe Radu

    2014-07-01

    Full Text Available The genetic diversity of Romanian most important coniferous tree species, the Norway spruce, was estimated by means of allozyme markers. A total of 695 adult trees sampled from eleven populations grouped in six mountainous areas in the Romanian Carpathians were analyzed. In three metapopulations (Maramureş, Postăvar and Parâng, to evaluate the influence of altitudinal gradient on genetic diversity, samples were collected from populations located at high and low altitude. At other location (ApuseniMountains we compared the narrow-crown biotype (Picea abies var. columnaris and the pyramidal crown biotype (Picea abies var. pyramidalis and explored the genetic structure of peat bog ecotype. By analyzing 7 enzyme systems and 12 enzyme coding loci, a total of 38 allelic variants have been detected. The mean value of polymorphic loci for the six sites was 86.1%, ranging between 83.3% and 91.7% and the mean expected heterozygosity was 0.115, resulting in a moderate level of genetic diversity. The highest genetic diversity (He = 0.134 was found in the narrow-crown spruce population. Apuseni metapopulation showed the highest genetic diversity (He = 0.125, being the most valuable for conservation of genetic resources. The small value of fixation index (FST = 0.009 indicates a low genetic differentiation between the six sites and AMOVA test revealed a very high level of genetic diversity within population (99%. Comparative analysis of genetic parameters showed small differences between high and low altitude populations at each site, probably due to the neutral character of the markers analyzed and the effect of gene flow between gradiental populations.

  5. Invasion genetics:Lessons from a ubiquitous bird, the house sparrowPasser domesticus

    Institute of Scientific and Technical Information of China (English)

    Andrea L LIEBL; Aaron W SCHREY; Samuel C ANDREW; Elizabeth L SHELDON; Simon C GRIFFITH

    2015-01-01

    Following an introduction, non-native species are exposed to environments that differ from those found in their native range; further, as these non-native species expand beyond the site of introduction, they must constantly adapt to novel environ-ments. Although introduced species are present across most ecosystems, few species have successfully established themselves on a truly global scale. One such species, the house sparrowPasser domesticus, is now one of the world’s most broadly distributed vertebrate species and has been introduced to a great part of its current range. To date, work on four continents suggests both ge-netic and phenotypic variation exists between native and introduced ranges. As such, house sparrows represent an excellent op-portunity to study adaptations to novel environments and how these adaptations are derived. The global distribution of this spe-cies and the multiple independent introductions to geographically isolated sites allow researchers to ask questions regarding ge-netic variation and adaptation on a global scale. Here, we summarize the molecular studies of invasive house sparrows from the earliest work using allozymes through more recent work on epigenetics; using these studies, we discuss patterns of dispersal of this species. We then discuss future directions in techniques (e.g. next generation sequencing) and how they will provide new in-sight into questions that are fundamental to invasion biology. Finally, we discuss how continued research on the house sparrow in light of these genetic changes and adaptations will elucidate answers of adaptation, invasion biology, range expansion, and resi-lience in vertebrate systems generally [Current Zoology 61 (3): 465–476, 2015].

  6. Fifteen from one: a revision of the Galaxias olidus Günther, 1866 complex (Teleostei, Galaxiidae) in south-eastern Australia recognises three previously described taxa and describes 12 new species.

    Science.gov (United States)

    Raadik, Tarmo A

    2014-01-01

    The systematics of the Galaxias olidus hyper-species complex from freshwater habitats in south-eastern, mainland Australia is revised. Galaxias olidus Günther 1866 is redescribed, Galaxias fuscus Mack 1936 and Galaxias ornatus Castelnau 1873, previously synonymised with G. olidus (sensu lato), are reinstated as valid taxa and redescribed, and 12 taxa are described as new: Galaxias aequipinnis sp. nov., Galaxias arcanus sp. nov., Galaxias brevissimus sp. nov., Galaxias gunaikurnai sp. nov., Galaxias lanceolatus sp. nov., Galaxias longifundus sp. nov., Galaxias mcdowalli sp. nov., Galaxias mungadhan sp. nov., Galaxias oliros sp. nov., Galaxias supremus sp. nov., Galaxias tantangara sp. nov., and Galaxias terenasus sp. nov. These species are morphologically similar and, whilst there is extensive overlap in meristic counts and morphometric characters, each can be diagnosed by unique combinations of characters, including allozyme loci and colour pattern; morphological diagnosis is improved greatly if based on freshly formalin-fixed material. Galaxias schomburgkii Peters 1868, Galaxias bongbong Macleay 1881, Galaxias kayi Ramsay & Ogilby 1886 and Galaxias oconnori Ogilby 1912 are retained as junior synonyms of G. olidus (sensu stricto). The types for Galaxias findlayi Macleay 1882 are lost and no specimens matching its description were collected or examined from the Mt. Kosciuszko region; it is also currently retained as a junior synonym of Galaxias olidus s.s. The species G. terenasus sp. nov. and G. arcanus sp. nov. are the most morphologically specialised in the complex and G. olidus s.s remains the most morphologically variable species. It also remains the most widespread taxon, though its previously known distribution is reduced, particularly in the south-west of its range. Nine species are narrow-range endemics, known from one, or only a few, locations, and these restricted distributions most probably reflect the fragmentation and reduction of former ranges caused

  7. Global biodiversity assessment and hyper-cryptic species complexes: more than one species of elephant in the room?

    Science.gov (United States)

    Adams, Mark; Raadik, Tarmo A; Burridge, Christopher P; Georges, Arthur

    2014-07-01

    Several recent estimates of global biodiversity have concluded that the total number of species on Earth lies near the lower end of the wide range touted in previous decades. However, none of these recent estimates formally explore the real "elephant in the room", namely, what proportion of species are taxonomically invisible to conventional assessments, and thus, as undiagnosed cryptic species, remain uncountable until revealed by multi-gene molecular assessments. Here we explore the significance and extent of so-called "hyper-cryptic" species complexes, using the Australian freshwater fish Galaxias olidus as a proxy for any organism whose taxonomy ought to be largely finalized when compared to those in little-studied or morphologically undifferentiated groups. Our comprehensive allozyme (838 fish for 54 putative loci), mtDNA (557 fish for 605 bp of cytb), and morphological (1963-3389 vouchers for 17-58 characters) assessment of this species across its broad geographic range revealed a 1500% increase in species-level biodiversity, and suggested that additional taxa may remain undiscovered. Importantly, while all 15 candidate species were morphologically diagnosable a posteriori from one another, single-gene DNA barcoding proved largely unsuccessful as an a priori method for species identification. These results lead us to draw two strong inferences of relevance to estimates of global biodiversity. First, hyper-cryptic complexes are likely to be common in many organismal groups. Second, no assessment of species numbers can be considered "best practice" in the molecular age unless it explicitly includes estimates of the extent of cryptic and hyper-cryptic biodiversity. [Galaxiidae; global estimates; hyper-diverse; mountain galaxias; species counts; species richness.]. PMID:24627185

  8. Molecular phylogeny and phylogeography of the Australian freshwater fish genus Galaxiella, with an emphasis on dwarf galaxias (G. pusilla).

    Science.gov (United States)

    Unmack, Peter J; Bagley, Justin C; Adams, Mark; Hammer, Michael P; Johnson, Jerald B

    2012-01-01

    The freshwater fauna of Southern Australia is primarily restricted to the southwestern and southeastern corners of the continent, and is separated by a large, arid region that is inhospitable to this biota. This geographic phenomenon has attracted considerable interest from biogeographers looking to explain evolutionary diversification in this region. Here, we employed phylogenetic and phylogeographic approaches to evaluate the effect of this barrier on a group of four galaxiid fish species (Galaxiella) endemic to temperate Southern Australia. We also tested if continental shelf width has influenced connectivity among populations during low sea levels when rivers, now isolated, could have been connected. We addressed these questions by sampling each species across its range using multiple molecular markers (mitochondrial cytochrome b sequences, nuclear S7 intron sequences, and 49 allozyme loci). These data also allowed us to assess species boundaries, to refine phylogenetic affinities, and to estimate species ages. Interestingly, we found compelling evidence for cryptic species in G. pusilla, manifesting as allopatric eastern and western taxa. Our combined phylogeny and dating analysis point to an origin for the genus dating to the early Cenozoic, with three of the four species originating during the Oligocene-Miocene. Each Galaxiella species showed high levels of genetic divergences between all but the most proximate populations. Despite extensive drainage connections during recent low sea levels in southeastern Australia, populations of both species within G. pusilla maintained high levels of genetic structure. All populations experienced Late Pleistocene-Holocene population growth, possibly in response to the relaxation of arid conditions after the last glacial maximum. High levels of genetic divergence and the discovery of new cryptic species have important implications for the conservation of this already threatened group of freshwater species. PMID:22693638

  9. Mosaic microecological differential stress causes adaptive microsatellite divergence in wild barley, Hordeum spontaneum, at Neve Yaar, Israel.

    Science.gov (United States)

    Huang, Qingyang; Beharav, Alex; Li, Youchun; Kirzhner, Valery; Nevo, Eviatar

    2002-12-01

    Genetic diversity at 38 microsatellite (short sequence repeats (SSRs)) loci was studied in a sample of 54 plants representing a natural population of wild barley, Hordeum spontaneum, at the Neve Yaar microsite in Israel. Wild barley at the microsite was organized in a mosaic pattern over an area of 3180 m2 in the open Tabor oak forest, which was subdivided into four microniches: (i) sun-rock (11 genotypes), (ii) sun-soil (18 genotypes), (iii) shade-soil (11 genotypes), and (iv) shade-rock (14 genotypes). Fifty-four genotypes were tested for ecological-genetic microniche correlates. Analysis of 36 loci showed that allele distributions at SSR loci were nonrandom but structured by ecological stresses (climatic and edaphic). Sixteen (45.7%) of 35 polymorphic loci varied significantly (p genetic divergence and diversity were found among the four subpopulations. The soil and shade subpopulations showed higher genetic diversities at SSR loci than the rock and sun subpopulations, and the lowest genetic diversity was observed in the sun-rock subpopulation, in contrast with the previous allozyme and RAPD studies. On average, of 36 loci, 88.75% of the total genetic diversity exists within the four microniches, while 11.25% exists between the microniches. In a permutation test, G(ST) was lower for 4999 out of 5000 randomized data sets (p genetic distance was between shade-soil and sun-rock (D = 0.222). Our results suggest that diversifying natural selection may act upon some regulatory regions, resulting in adaptive SSR divergence. Fixation of some loci (GMS61, GMS1, and EBMAC824) at a specific microniche seems to suggest directional selection. The pattern of other SSR loci suggests the operation of balancing selection. SSRs may be either direct targets of selection or markers of selected haplotypes (selective sweep). PMID:12502268

  10. Ecological-genomic diversity of microsatellites in wild barley, Hordeum spontaneum, populations in Jordan.

    Science.gov (United States)

    Baek, H J; Beharav, A; Nevo, E

    2003-02-01

    We analyzed the ecological-genomic diversity of microsatellites of wild barley, Hordeum spontaneum (C. Koch) Thell., at 18 loci in 306 individuals of 16 populations from Jordan across a southward transect of increasing aridity. The 18 microsatellites revealed a total of 249 alleles, with an average of 13.8 alleles per locus (range 3-29), with nonrandom distribution. The proportion of polymorphic loci per population averaged 0.91 (range 0.83-1.00); gene diversity, He, averaged 0.512 (range 0.38-0.651). We compared the number of alleles of the 18 loci to those found in Israel populations by Turpeinen et al. Out of the 280 alleles, 138 (49.3%) were unique (i.e. occurred in only one of the countries). The percentage of unique alleles in Jordan and Israel populations was 43.0% and 17.9%, respectively, suggesting that Jordan is an important center of origin and diversity of wild barley. Estimates of mean gene diversity were highest in the populations collected near the Golan Heights, such as Shuni North, Shuni South and Jarash. Sixty nine percent of the microsatellite variation was partitioned within populations and 31% between populations. Associations between ecogeographical values and gene diversity were established for eight microsatellite loci. The cluster produced by simple sequence repeat (SSR) data is mostly coincidence with the result of the dendrogram of the Spalax ehrenbergi superspecies of subterranean mole rats in Jordan based on allozyme gene loci. The major soil type in the wild barley habitat of each ecological group was different. Stepwise multiple regression analysis indicated that the variance of gene diversity was explained by altitude (R(2) = 0.362**). These observations suggest that microsatellites are at least partly adaptive and subject to natural selection. PMID:12589539

  11. Multiple SNP markers reveal fine-scale population and deep phylogeographic structure in European anchovy (Engraulis encrasicolus L.).

    KAUST Repository

    Zarraonaindia, Iratxe

    2012-07-30

    Geographic surveys of allozymes, microsatellites, nuclear DNA (nDNA) and mitochondrial DNA (mtDNA) have detected several genetic subdivisions among European anchovy populations. However, these studies have been limited in their power to detect some aspects of population structure by the use of a single or a few molecular markers, or by limited geographic sampling. We use a multi-marker approach, 47 nDNA and 15 mtDNA single nucleotide polymorphisms (SNPs), to analyze 626 European anchovies from the whole range of the species to resolve shallow and deep levels of population structure. Nuclear SNPs define 10 genetic entities within two larger genetically distinctive groups associated with oceanic variables and different life-history traits. MtDNA SNPs define two deep phylogroups that reflect ancient dispersals and colonizations. These markers define two ecological groups. One major group of Iberian-Atlantic populations is associated with upwelling areas on narrow continental shelves and includes populations spawning and overwintering in coastal areas. A second major group includes northern populations in the North East (NE) Atlantic (including the Bay of Biscay) and the Mediterranean and is associated with wide continental shelves with local larval retention currents. This group tends to spawn and overwinter in oceanic areas. These two groups encompass ten populations that differ from previously defined management stocks in the Alboran Sea, Iberian-Atlantic and Bay of Biscay regions. In addition, a new North Sea-English Channel stock is defined. SNPs indicate that some populations in the Bay of Biscay are genetically closer to North Western (NW) Mediterranean populations than to other populations in the NE Atlantic, likely due to colonizations of the Bay of Biscay and NW Mediterranean by migrants from a common ancestral population. Northern NE Atlantic populations were subsequently established by migrants from the Bay of Biscay. Populations along the Iberian

  12. The contribution of recombination to heterozygosity differs among plant evolutionary lineages and life-forms

    Directory of Open Access Journals (Sweden)

    Verdú Miguel

    2010-01-01

    Full Text Available Abstract Background Despite its role as a generator of haplotypic variation, little is known about how the rates of recombination evolve across taxa. Recombination is a very labile force, susceptible to evolutionary and life trait related processes, which have also been correlated with general levels of genetic diversity. For example, in plants, it has been shown that long-lived outcrossing taxa, such as trees, have higher heterozygosity (He at SSRs and allozymes than selfing or annual species. However, some of these tree taxa have surprisingly low levels of nucleotide diversity at the DNA sequence level, which points to recombination as a potential generator of genetic diversity in these organisms. In this study, we examine how genome-wide and within-gene rates of recombination evolve across plant taxa, determine whether such rates are influenced by the life-form adopted by species, and evaluate if higher genome-wide rates of recombination translate into higher He values, especially in trees. Results Estimates of genome-wide (cM/Mb recombination rates from 81 higher plants showed a significant phylogenetic signal. The use of different comparative phylogenetic models demonstrated that there is a positive correlation between recombination rate and He (0.83 ± 0.29, and that trees have higher rates of genome-wide recombination than short-lived herbs and shrubs. A significant taxonomic component was further made evident by our models, as conifers exhibited lower recombination rates than angiosperms. This trend was also found at the within-gene level. Conclusions Altogether, our results illustrate how both common ancestry and life-history traits have to be taken into account for understanding the evolution of genetic diversity and genomic rates of recombination across plant species, and highlight the relevance of species life forms to explain general levels of diversity and recombination.

  13. Breast cancer risk, dietary intake, and methylenetetrahydrofolate reductase (MTHFR)single nucleotide polymorphisms.

    Science.gov (United States)

    Alshatwi, Ali A

    2010-07-01

    Diet plays an important role in DNA methylation, synthesis, and repair; intake has been associated with breast cancer. The folate-metabolizing enzyme, methylenetetrahydrofolate reductase (MTHFR) is polymorphic at nucleotides 677 (C-->T), resulting in allozymes with altered activity and is thus believed to cause interindividual differences in cancer risk susceptibility. I evaluated this polymorphism and its effect on the food intake and breast cancer risk association in a population-based case-control study of 100 breast cancer cases and 100 controls using a real-time PCR based assay. All subjects completed in-person interviews, which included a food-frequency questionnaire. Unconditional logistic regression models were used to calculate odds ratios and their 95% confidence intervals, after adjusting for potential confounding factors. Cases and controls were similar in the distribution ofMTHFRpolymorphisms at codon 677 (41.4% cases and 41.8% controls carried theTallele). An inverse association of breast cancer risk with food intake was observed in all genotype groups, particularly among subjects with the677TTgenotype. Compared with those with the677CCgenotype and high food intake frequency, the adjusted odds ratios (95% confidence intervals) associated with low food intake were 1.94 (1.15-3.26), 2.17 (1.34-3.51), and 2.51 (1.37-4.60) for subjects who hadCC,CT, andTTgenotypes (Pfor interaction, 0.05). Results of this study suggest that theMTHFR C677T polymorphism may modify the association between dietary intake and breast cancer risk. PMID:20417243

  14. Genetic and morphometric comparisons of squat lobster, Munidopsis scobina (Decapoda: Anomura: Galatheidae) populations, with notes on the phylogeny of the genus Munidopsis

    Science.gov (United States)

    Creasey, Simon; Rogers, Alex; Tyler, Paul; Gage, John; Jollivet, Didier

    2000-01-01

    Specimens of the galatheid Munidopsis scobina were collected from two stations on the continental slope off Oman, at depths of 900 and 1000 m, using an Agassiz trawl. Starch gel electrophoresis, across 10 enzyme loci, was carried out on 427 specimens. Genetic variability was calculated for both populations using a number of parameters. F-statistics were used to estimate genetic variance within ( FIS) and between ( FST) populations. Significant deviations from Hardy-Weinberg expectations were detected at one locus ( Gotb). Analyses of FIS revealed significant differences from zero at Gotb and Pgm, as a result of heterozygote deficiency. No relationship was observed between size of individuals and genotype. The number of genetically effective migrants per deme per generation ( Nem) was calculated using both FST and private alleles methods. Nem values were theoretically sufficient to offset the effects of genetic drift. Additional morphometric analyses were carried out on Munidopsis scobina from the two populations. Individuals were sexed ( n=2476 individuals) and ten parameters measured ( n=1238). All specimens were examined for parasites (either bopyrid isopod or rhizocephalan). Significant male-biased sex ratios were observed in both populations ( psexes, and within sexes between sites; possibly related to a size-dependent response to hypoxia. Significant differences also were observed in mean cheliped length between sexes ( p<0.01), potentially indicating that male M. scobina exhibit agonistic behaviour. The genetic relationships of Munidopsis scobina to four other species of Munidopsis ( M. crassa, M. parfaiti, M. spinihirsuta and M. subsquamosa) and the confamilial Galathea squamifera were also examined using allozyme loci. Within the genus Munidopsis, pairwise comparisons of genetic identity were within the normal range expected for congeneric species. Comparisons between G. squamifera and Munidopsis spp. were within the range expected for confamilial genera.

  15. Selection on floral characters in natural Spanish populations of Silene latifolia.

    Science.gov (United States)

    Wright, J W; Meagher, T R

    2004-03-01

    In insect-pollinated plants, floral characters are expected to play an important role in paternal and maternal reproductive success. Bateman's principle states that male reproductive success increases with more mating opportunities, while female reproductive success is limited by the amount of resources available to produce progeny, thus there should be greater selection on male floral characters than on female. In the case of the dioecious plant Silene latifolia, floral characters are likely to be influenced by its association within its native European range with moths of the genus Hadena, which serve as both pollinators and seed predators. The present study addresses relationships between male and female reproductive success, spatial location and floral characters (corolla, calyx and claw) over a 2-year period in two Spanish populations of S. latifolia in the presence of Hadena moths. A maximum likelihood paternity analysis using genetic variation at six allozyme markers showed heterogeneity in male reproductive success. There was much less variation in female reproductive success. When this analysis was extended to include interplant distance as a causal factor underlying variation in male success, we found that successful pollination tended to be limited to nearby females, in accordance with exponential decay of pollen dispersal with increasing distance. When the paternity analysis included floral characters as a causal factor underlying variation in male success, our data showed little evidence for directional selection, but there was stabilizing selection in one of the two years for calyx diameter. Selection on female characters varied widely between sites and years, in most of the site/year combinations there was little selection on female floral characters; however, in one site/year there was evidence for selection on all three floral characters. We conclude that pollinators visit flowers that are close together, and that while floral characters are

  16. Herança e ligação em locos de isoenzimas em Genipa americana L. Inheritance and linkage in isozymes loci of Genipa americana L.

    Directory of Open Access Journals (Sweden)

    Alexandre Magno SEBBENN

    2004-06-01

    Full Text Available A herança e a ligação foram estudadasem quatro locos polimórficos (6pghd-1, Pgi-2,Mdh-1 e Mdh-2 de três sistemas isoenzimáticos deGenipa americana, analisados por eletroforesehorizontal em gel de amido, usando tecidoscoletados de quinze progênies de polinização aberta,procedentes de Moji-Guaçu, Estado de São Paulo.Esses locos segregaram de dois a três alelos.A segregação nesses locos foi homogênea entreárvores. Contudo, existem desvios significativos dasegregação esperada 1:1 para algumas árvores emalguns locos. Desvios significativos da razão desegregação esperada 1:1 foram detectados noslocos Mdh-2 e 6pgdh-1. Não foram detectadasevidências de ligação entre nenhum dos pares delocos avaliados em G. americana e esses podemser utilizados sem restrição para estudos do sistemade reprodução, diversidade e estrutura genética depopulações da espécie.Inheritance and linkage for fourpolymorphic loci (6pghd-1, Pgi-2, Mdh-1 andMdh-2 from three enzyme systems in Genipaamericana were analyzed by horizontal starch gelelectrophoresis using tissues collected from fiftyopen-pollinated families in Moji-Guaçu, São PauloState. These allozyme loci have segregated fromtwo to four alleles per polymorphic locus. Genesegregation on those loci was homogeneous amongtrees. However, there were significant deviationsfrom the expected segregation ratios on some lociand some individual trees. In addition, Mdh-2 and6pgdh-1 loci have shown significant deviationsfrom the 1:1 expected segregation ratio. Linkagedisequilibrium evidences were not detected betweenany two pairs of loci from G. americana and thosecan be used with no restriction to study the matingsystem, genetic diversity, and genetic structure onthe species.

  17. Wild Barley,Hordeum spontaneum,a Genetic Resource for Crop Improvement in Cold and Arid Regions

    Institute of Scientific and Technical Information of China (English)

    Eviatar; Nevo

    2008-01-01

    Food security in cold and arid regions in the world is threatened by stressful and unpredictable environments.The sus-tainable and economically viable solution for increasing stability of food productivity in cold and arid regions is genetic improvement of crops towards high resistance to abiotic stresses,mainly cold and drought resistance.It is often empha-sized that crop genetic improvement lies in exploiting the gene pools of the wild relatives of the crop plant.Wild barley,H.spontaneum,the progenitor of cultivated barley,is a selfing annual grass of predominantly Mediterranean and Irano-Turanian distribution that penetrates into desert environments where it maintains stable populations.Wild barley is also found in cold regions,such as in Tibet.The adaptation of wild barley to the arid region in Israel and Jordan,and the cold region in Tibet has accumulated rich genetic diversities for drought,salt,and cold resistances in wild barley,which is the genetic resource for barley and other crop improvement in arid and cold regions.These genetic diversities are revealed by allozymes,DNA-based molecular markers,and morphological and physiological traits of wild barley plants.Quantita-tive trait loci(QTLs) related to drought resistance were identified in wild barley via the QTL mapping approach.Drought resistance genes such as dehydrins,hsdr4,and eibi1 were identified in wild barley based on the candidate gene approach,gene differential expression approach,and molecular genetic approach,respectively.Genetics and genomics of wild bar-ley cold resistance have not been exploited yet,remaining a huge treasure for future crop improvement of cold resistance.Advanced backcross QTL analysis,the introgression libraries based on wild barley as donors,a QTL approach based on wide crosses using wild barley,and positional cloning of natural QTLs will play prevailing roles to help us understand the molecular control of cold and drought tolerance.Integration of QTL information into a

  18. Escape to Alcatraz: evolutionary history of slender salamanders (Batrachoseps on the islands of San Francisco Bay

    Directory of Open Access Journals (Sweden)

    Martínez-Solano Iñigo

    2009-02-01

    Full Text Available Abstract Background Island populations are excellent model systems for studies of phenotypic, ecological and molecular evolution. In this study, molecular markers of mitochondrial and nuclear derivation were used to investigate the evolution, structure and origin of populations of the California slender salamander (Batrachoseps attenuatus inhabiting the six major islands of San Francisco Bay, formed following the rising of sea level around 9,000 years ago. Results There was a high degree of congruence in the results of analyses of nucleotide and allozyme data, both of which strongly support the hypothesis that, for the majority of the islands, salamanders are descended from hilltop populations that became isolated with the formation of the Bay ca. 9,000 years ago. There are two exceptions (Alcatraz and Yerba Buena where the evidence suggests that salamander populations are wholly or in part, the result of anthropogenic introductions. Comparison of the molecular data and the interpretations drawn therefrom with an earlier morphological study of many of the same salamander populations show some of the same evolutionary trends. Conclusion In spite of marked differences between the evolutionary rates of the two kinds of molecular markers, both indicate distinctive and similar patterns of population structure for B. attenuatus in the San Francisco Bay Area and its islands. With the two noted exceptions, it is clear that most island populations were established prior to the 9,000 years since the formation of the Bay. Results of coalescence-based analyses suggest that for most island populations the mtDNA lineages from which they were derived date from the Pleistocene. It can be said that, based on observed values of genetic diversity, the last 9,000 years of evolution on these islands have been characterized by relative stability, with the occasional extinction of some haplotypes or alleles that were formerly shared between island and mainland

  19. A Ploidy Difference Represents an Impassable Barrier for Hybridisation in Animals. Is There an Exception among Botiid Loaches (Teleostei: Botiidae?

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    Jörg Bohlen

    Full Text Available One of the most efficient mechanisms to keep animal lineages separate is a difference in ploidy level (number of whole genome copies, since hybrid offspring from parents with different ploidy level are functionally sterile. In the freshwater fish family Botiidae, ploidy difference has been held responsible for the separation of its two subfamilies, the evolutionary tetraploid Botiinae and the diploid Leptobotiinae. Diploid and tetraploid species coexist in the upper Yangtze, the Pearl River and the Red River basins in China. Interestingly, the species 'Botia' zebra from the Pearl River basin combines a number of morphological characters that otherwise are found in the diploid genus Leptobotia with morphological characters of the tetraploid genus Sinibotia, therefore the aim of the present study is to test weather 'B.' zebra is the result of a hybridisation event between species from different subfamilies with different ploidy level. A closer morphological examination indeed demonstrates a high similarity of 'B.' zebra to two co-occurring species, the diploid Leptobotia guilinensis and the tetraploid Sinibotia pulchra. These two species thus could have been the potential parental species in case of a hybrid origin of 'B.' zebra. The morphologic analysis further reveals that 'B.' zebra bears even the diagnostic characters of the genera Leptobotia (Leptobotiinae and Sinibotia (Botiinae. In contrast, a comparison of six allozyme loci between 'B.' zebra, L. guilinensis and S. pulchra showed only similarities between 'B.' zebra and S. pulchra, not between 'B.' zebra and L. guilinensis. Six specimens of 'B.' zebra that were cytogenetically analysed were tetraploid with 4n = 100. The composition of the karyotype (18% metacentric, 18% submetacentric, 36% subtelocentric and 28% acrocentric chromosomes differs from those of L. guilinensis (12%, 24%, 20% and 44% and S. pulchra (20%, 26%, 28% and 26%, and cannot be obtained by any combination of genomes from

  20. Expression pattern, ethanol-metabolizing activities, and cellular localization of alcohol and aldehyde dehydrogenases in human large bowel: association of the functional polymorphisms of ADH and ALDH genes with hemorrhoids and colorectal cancer.

    Science.gov (United States)

    Chiang, Chien-Ping; Jao, Shu-Wen; Lee, Shiao-Pieng; Chen, Pei-Chi; Chung, Chia-Chi; Lee, Shou-Lun; Nieh, Shin; Yin, Shih-Jiun

    2012-02-01

    Alcohol dehydrogenase (ADH) and aldehyde dehydrogenase (ALDH) are principal enzymes responsible for metabolism of ethanol. Functional polymorphisms of ADH1B, ADH1C, and ALDH2 genes occur among racial populations. The goal of this study was to systematically determine the functional expressions and cellular localization of ADHs and ALDHs in human rectal mucosa, the lesions of adenocarcinoma and hemorrhoid, and the genetic association of allelic variations of ADH and ALDH with large bowel disorders. Twenty-one surgical specimens of rectal adenocarcinoma and the adjacent normal mucosa, including 16 paired tissues of rectal tumor, normal mucosae of rectum and sigmoid colon from the same individuals, and 18 surgical mixed hemorrhoid specimens and leukocyte DNA samples from 103 colorectal cancer patients, 67 hemorrhoid patients, and 545 control subjects recruited in previous study, were investigated. The isozyme/allozyme expression patterns of ADH and ALDH were identified by isoelectric focusing and the activities were assayed spectrophotometrically. The protein contents of ADH/ALDH isozymes were determined by immunoblotting using the corresponding purified class-specific antibodies; the cellular activity and protein localizations were detected by immunohistochemistry and histochemistry, respectively. Genotypes of ADH1B, ADH1C, and ALDH2 were determined by polymerase chain reaction-restriction fragment length polymorphisms. At 33mM ethanol, pH 7.5, the activity of ADH1C*1/1 phenotypes exhibited 87% higher than that of the ADH1C*1/*2 phenotypes in normal rectal mucosa. The activity of ALDH2-active phenotypes of rectal mucosa was 33% greater than ALDH2-inactive phenotypes at 200μM acetaldehyde. The protein contents in normal rectal mucosa were in the following order: ADH1>ALDH2>ADH3≈ALDH1A1, whereas those of ADH2, ADH4, and ALDH3A1 were fairly low. Both activity and content of ADH1 were significantly decreased in rectal tumors, whereas the ALDH activity remained

  1. 安徽黄山青冈种群遗传结构的空间自相关分析%SPATIAL AUTOCORRELATION OF GENETIC STRUCTURE IN A POPULATION OF CYCLOBALANOPSIS GLAUCA IN HUANGSHAN, ANHUI

    Institute of Scientific and Technical Information of China (English)

    陈小勇

    2001-01-01

    Genetic structure is defined as non-random distribution of genetic variation, and this study utilised spatial autocorrelation analysis to analyse variation among genotypes in a single population as, especially for within deme analysis, it is better than F-statistics or GST. The genotype of all individuals ≥2.5 cm DBH in a western Huangshan population of Cyclobalanopsis glauca was detected using allozyme analysis, and spatial autocorrelation of each allele was then analyzed using Moran's I. Most Moran's I values for alleles were larger than expected values, but two of the alleles had significant positive spatial autocorrelation. Detailed analysis showed that most alleles were significantly spatial-autocorrelated at short distances. A correlogram showed positive spatial autocorrelation in all alleles except Est-2-d at short distances (0-5 m). In general, Moran's I indices decreased as distance interval increased. However, the trends of different alleles varied, and therefore no dominant evolutionary factors could be identified.%以黄山一青冈(Cyclobalanopsis glauca)种群为例,研究了种群内等位基因的空间格局。在种群内,大多数等位基因的Moran's I 指数大于期望值,但只有两个等位基因存在显著的正空间自相关;如果考虑不同的无性系分株时,大多数等位基因在短距离内存在显著的空间自相关。相关图表明不同距离间隔,Moran's I 指数变化无规律,表明没有哪个进化因子起决定作用,但无性系繁殖在空间自相关中起重要作用,尤其是在近距离。

  2. Ethanol oxidation and the inhibition by drugs in human liver, stomach and small intestine: Quantitative assessment with numerical organ modeling of alcohol dehydrogenase isozymes.

    Science.gov (United States)

    Chi, Yu-Chou; Lee, Shou-Lun; Lai, Ching-Long; Lee, Yung-Pin; Lee, Shiao-Pieng; Chiang, Chien-Ping; Yin, Shih-Jiun

    2016-10-25

    Alcohol dehydrogenase (ADH) is the principal enzyme responsible for metabolism of ethanol. Human ADH constitutes a complex isozyme family with striking variations in kinetic function and tissue distribution. Liver and gastrointestinal tract are the major sites for first-pass metabolism (FPM). Their relative contributions to alcohol FPM and degrees of the inhibitions by aspirin and its metabolite salicylate, acetaminophen and cimetidine remain controversial. To address this issue, mathematical organ modeling of ethanol-oxidizing activities in target tissues and that of the ethanol-drug interactions were constructed by linear combination of the corresponding numerical rate equations of tissue constituent ADH isozymes with the documented isozyme protein contents, kinetic parameters for ethanol oxidation and the drug inhibitions of ADH isozymes/allozymes that were determined in 0.1 M sodium phosphate at pH 7.5 and 25 °C containing 0.5 mM NAD(+). The organ simulations reveal that the ADH activities in mucosae of the stomach, duodenum and jejunum with ADH1C*1/*1 genotype are less than 1%, respectively, that of the ADH1B*1/*1-ADH1C*1/*1 liver at 1-200 mM ethanol, indicating that liver is major site of the FPM. The apparent hepatic KM and Vmax for ethanol oxidation are simulated to be 0.093 ± 0.019 mM and 4.0 ± 0.1 mmol/min, respectively. At 95% clearance in liver, the logarithmic average sinusoidal ethanol concentration is determined to be 0.80 mM in accordance with the flow-limited gradient perfusion model. The organ simulations indicate that higher therapeutic acetaminophen (0.5 mM) inhibits 16% of ADH1B*1/*1 hepatic ADH activity at 2-20 mM ethanol and that therapeutic salicylate (1.5 mM) inhibits 30-31% of the ADH1B*2/*2 activity, suggesting potential significant inhibitions of ethanol FPM in these allelotypes. The result provides systematic evaluations and predictions by computer simulation on potential ethanol FPM in target tissues and hepatic

  3. Variabilidade genética em uma população de Leporinus lacustris Campos, 1945 (Osteichthyes: Anostomidae da Lagoa do Carão (planície de inundação do alto rio Paraná, Brasil - DOI: 10.4025/actascibiolsci.v27i1.1370 Genetic variability in a Leporinus lacustris Campos, 1945 (Osteichthyes: Anostomidae population from Lagoa do Carão (Upper Paraná River floodplain, Brazil - DOI: 10.4025/actascibiolsci.v27i1.1370

    Directory of Open Access Journals (Sweden)

    Maria Dolores Peres

    2005-03-01

    Full Text Available A variabilidade genética de Leporinus lacustris foi estimada a partir de uma população coletada na lagoa do Carão (22o44’S/53o17’W, na planície de inundação do alto rio Paraná. Foram identificados trinta locos em dezesseis sistemas enzimáticos analisados (AAT, ACP, ADH, EST, GDH, G3PDH, G6PDH, GPI, IDHP, L-IDDH, LDH, MDH, MDHP, PER, PGM, e SOD, por eletroforese em gel de amido de milho 15%. A proporção de loci polimórficos foi estimada em 26,67%. A heterozigosidade média esperada foi estimada em 0,0806 ± 0,0313, a qual foi menor que as estimadas anteriormente para L. friderici, L. elongatus e L. obtusidens do rio Tibagi, um tributário da bacia do rio Paraná. A baixa heterozigosidade da população de L. lacustris analisada pode ser atribuída aos hábitos sedentários desta espécieA Leporinus lacustris population from the floodplain of Upper Paraná River was analyzed for genetic diversity by allozyme data. Specimens were sampled in Southern Brazil, at Lagoa do Carão (22o44’S/53o17’W in the floodplain of Upper Paraná River. A total of thirty loci were identified in sixteen enzymatic systems (AAT, ACP, ADH, EST, GDH, G3PDH, G6PDH, GPI, IDHP, L-IDDH, LDH, MDH, MDHP, PER, PGM, and SOD, on 15% corn starch gel electrophoresis. Proportions of polymorphic loci were estimated as 26.67%. Expected heterozygosity was estimated as 0.0806 ± 0.0313, which was lower than previous estimates for L. friderici, L. elongates and L. obtusidens from the Tibagi River, a tributary of the Paraná River basin. The low heterozygosity of the L. lacustris analyzed population could be attributed to the sedentary habit of this species

  4. A Ploidy Difference Represents an Impassable Barrier for Hybridisation in Animals. Is There an Exception among Botiid Loaches (Teleostei: Botiidae)?

    Science.gov (United States)

    Bohlen, Jörg; Šlechtová, Vendula; Šlechta, Vlastimil; Šlechtová, Vera; Sember, Alexandr; Ráb, Petr

    2016-01-01

    One of the most efficient mechanisms to keep animal lineages separate is a difference in ploidy level (number of whole genome copies), since hybrid offspring from parents with different ploidy level are functionally sterile. In the freshwater fish family Botiidae, ploidy difference has been held responsible for the separation of its two subfamilies, the evolutionary tetraploid Botiinae and the diploid Leptobotiinae. Diploid and tetraploid species coexist in the upper Yangtze, the Pearl River and the Red River basins in China. Interestingly, the species 'Botia' zebra from the Pearl River basin combines a number of morphological characters that otherwise are found in the diploid genus Leptobotia with morphological characters of the tetraploid genus Sinibotia, therefore the aim of the present study is to test weather 'B.' zebra is the result of a hybridisation event between species from different subfamilies with different ploidy level. A closer morphological examination indeed demonstrates a high similarity of 'B.' zebra to two co-occurring species, the diploid Leptobotia guilinensis and the tetraploid Sinibotia pulchra. These two species thus could have been the potential parental species in case of a hybrid origin of 'B.' zebra. The morphologic analysis further reveals that 'B.' zebra bears even the diagnostic characters of the genera Leptobotia (Leptobotiinae) and Sinibotia (Botiinae). In contrast, a comparison of six allozyme loci between 'B.' zebra, L. guilinensis and S. pulchra showed only similarities between 'B.' zebra and S. pulchra, not between 'B.' zebra and L. guilinensis. Six specimens of 'B.' zebra that were cytogenetically analysed were tetraploid with 4n = 100. The composition of the karyotype (18% metacentric, 18% submetacentric, 36% subtelocentric and 28% acrocentric chromosomes) differs from those of L. guilinensis (12%, 24%, 20% and 44%) and S. pulchra (20%, 26%, 28% and 26%), and cannot be obtained by any combination of genomes from L

  5. Trichinella zimbabwensis n.sp. (Nematoda), a new non-encapsulated species from crocodiles (Crocodylus niloticus) in Zimbabwe also infecting mammals.

    Science.gov (United States)

    Pozio, E; Foggin, C M; Marucci, G; La Rosa, G; Sacchi, L; Corona, S; Rossi, P; Mukaratirwa, S

    2002-12-19

    Since 1995, Trichinella larvae have been detected in 39.5% of farmed crocodiles (Crocodylus niloticus) in Zimbabwe. Morphological, biological, biochemical and molecular studies carried out on one isolate from a farmed crocodile in 2001 support the conclusion that this parasite belongs to a new species, which has been named Trichinella zimbabwensis n.sp. This species, whose larvae are non-encapsulated in host muscles, infects both reptiles and mammals. The morphology of adults and larvae is similar to that of Trichinella papuae. Adults of T. zimbabwensis cross in both directions with adults of T. papuae (i.e. male of T. zimbabwensis per female of T. papuae and male of T. papuae per female of T. zimbabwensis), producing F1 offspring which produce very few and less viable F2 larvae. Muscle larvae of T. zimbabwensis, like those of T. papuae, do not infect birds. Three allozymes (of a total of 10) are diagnostic between T. zimbabwensis and T. papuae, and five are diagnostic between T. zimbabwensis and Trichinella pseudospiralis, the third non-encapsulated species. The percentage of the pairwise alignment identity between T. zimbabwensis and the other Trichinella species for the cytochrome oxidase subunit I gene, the large subunit ribosomal-DNA (mt-lsrDNA) gene and the expansion segment five, shows that T. zimbabwensis is more similar to the two non-encapsulated species T. papuae (91% for cytochrome oxidase I; 96% for mt-lsrDNA; and 88% for expansion segment five) and T. pseudospiralis (88% for cytochrome oxidase I; 90% for mt-lsrDNA; and 66-73% for expansion segment five) than to any of the encapsulated species (85-86% for cytochrome oxidase I; 88-89% for mt-lsrDNA; and 71-79% for expansion segment five). This is the first non-encapsulated species discovered in Africa. The finding of a new Trichinella species that infects both reptiles and mammals suggests that the origin of Trichinella parasites dates back further than previously believed and can contribute to

  6. Population genetic diversity and differentiation of endemic species Tetraena mongolica on the Western Ordos%西鄂尔多斯特有种四合木种群遗传多样性及遗传分化研究

    Institute of Scientific and Technical Information of China (English)

    张颖娟; 杨持

    2001-01-01

    Genetic diversity and differentiation among four populations of Tetreana mongolica on the Western Ordos plateau were studied using vertical slab polyacrylamide gel electrophonesis.Allozyme electrophonesis indicated relatively high level of genetic variation in this species with P=0.60,A=1.6,He=0.245.There existed low degree of population differentiation among the four populations with GST value being 0.051,significant different with other endangered species.The high intrapopulation variation and low interpopulation differentiation could explained that the different populations might originate from the same one and genetic drift or inbreeding depression had not influenced primary process of genetic diversity.%利用垂直板聚丙烯酰胺凝胶电泳技术,对西鄂尔多斯高原特有种四合木(Tetraena mogolica)4个种群遗传多样性和遗传分化进行了初步研究。电泳结果表明,四合木在种和种群水平维持较高的遗传多样性,多态位点百分率P=60%,等位基因平均数A=1.6,平均期望杂合度He=0.245。4个种群之间遗传分化很小,基因分化系数GST只有0.052,明显不同于其它濒危物种。四合木种群较高的遗传多样性和极低的种群间分化,说明不同的种群可能有共同的起源,随机遗传漂变和近交衰退不是影响遗传多样性的主要过程。

  7. Genetic diversity in Silene sennenii Pau (Caryophyllaceae assayed through DNA-based techniques

    Directory of Open Access Journals (Sweden)

    Blanché, C.

    2012-12-01

    Full Text Available Silene sennenii is a narrow endemic species from the NE of the Iberian Peninsula. It is considered as EN (“Endangered” according to the IUCN criteria and is under legal protection in Catalonia. In the present work we report an assay using three different approaches for surveying the genetic diversity in this rare, endangered campion: analysis of chloroplast haplotypes, AFLPs and transferability of microsatellites previously developed for Silene latifolia. None of the nine chloroplast regions sequenced showed any variability. Five out of the 21 microsatellite loci tested were polymorphic although more loci are required in order to perform a robust population genetics study. Regarding the AFLP analysis, five out of the 26 pairs of primers tested exhibited moderate levels of variability and therefore they could be useful for further investigating the genetic structure of S. sennenii. Although preliminary, our results based on three different genetic markers are in agreement with the low values of genetic variation already reported for this species employing allozymes.Silene sennenii es una especie endémica, circunscrita a un área extremadamente reducida al NE de la Península Ibérica. Está catalogada como EN («En Peligro» según criterios UICN y se encuentra legalmente protegida en Cataluña. En el presente trabajo se expone el ensayo de tres aproximaciones diferentes al estudio de su diversidad genética: análisis de haplotipos cloroplásticos, AFLPs y transferibilidad de microsatélites diseñados previamente para Silene latifolia. Ninguna de las nueve regiones cloroplásticas secuenciadas ha presentado variabilidad. Se han obtenido cinco loci microsatélites polimórficos de los 21 ensayados, cantidad insuficiente para llevar a cabo un estudio robusto sobre genética poblacional. En cuanto a AFLPs, cinco combinaciones de cebadores de las 26 probadas han mostrado niveles moderados de variabilidad siendo así útiles para posteriores

  8. Molecular evidence for ten species and Oligo-Miocene vicariance within a nominal Australian gecko species (Crenadactylus ocellatus, Diplodactylidae

    Directory of Open Access Journals (Sweden)

    Adams Mark

    2010-12-01

    Full Text Available Abstract Background Molecular studies have revealed that many putative 'species' are actually complexes of multiple morphologically conservative, but genetically divergent 'cryptic species'. In extreme cases processes such as non-adaptive diversification (speciation without divergent selection could mask the existence of ancient lineages as divergent as ecologically and morphologically diverse radiations recognised as genera or even families in related groups. The identification of such ancient, but cryptic, lineages has important ramifications for conservation, biogeography and evolutionary biology. Herein, we use an integrated multilocus genetic dataset (allozymes, mtDNA and nuclear DNA to test whether disjunct populations of the widespread nominal Australian gecko species Crenadactylus ocellatus include distinct evolutionary lineages (species, and to examine the timing of diversification among these populations. Results We identify at least 10 deeply divergent lineages within the single recognised species Crenadactylus ocellatus, including a radiation of five endemic to the Kimberley region of north-west Australia, and at least four known from areas of less than 100 km2. Lineages restricted to geographically isolated ranges and semi-arid areas across central and western Australia are estimated to have began to diversify in the late Oligocene/early Miocence (~20-30 mya, concurrent with, or even pre-dating, radiations of many iconic, broadly sympatric and much more species-rich Australian vertebrate families (e.g. venomous snakes, dragon lizards and kangaroos. Conclusions Instead of a single species, Crenadactylus is a surprisingly speciose and ancient vertebrate radiation. Based on their deep divergence and no evidence of recent gene flow, we recognise each of the 10 main lineages as candidate species. Molecular dating indicates that the genus includes some of the oldest vertebrate lineages confounded within a single species yet identified by

  9. A Biosystematic Study on Asplenium sarelii Complex%华中铁角蕨复合体的生物系统学研究

    Institute of Scientific and Technical Information of China (English)

    王中仁; 王可青; 张方; 侯鑫

    2003-01-01

    morphology. The denomination on this group of Asplenium is very confused in the herbaria. We hope bymeans of a biosystematic study to find out their genetic relationships in the reticulate evolution, and to raise asuggestion on their taxonomic treatment. Evidence from cytology, allozyme, morphology, and palynology showsthat three ancestor diploids have formed Asplenium sarelii complex comprising 13 members. A. sarelii Hook.should be typified as a diploid. The so-called tetraploid "A. sarelii" before is an allotetraploid that comesfrom the doubled hybrid between diploid A. sarelii and A. tenuicaule Hayata, which should be treated as anew species A. wudangense Z. R. Wang et X. Hou. A. pekinense Hance is an autotetraploid that comesfrom the doubled diploid ancestor A. sarelii. A. lushanense C. Chr., a diploid species and the only ancestorof A. yunnanense group, should not been sunk as a synonym of tetraploid A. yunnanense Franeh. Most prob-ably, A. varians Wall. ex Hook. et Grey. is an autotetraploid of A. tenuicaule Hayata. Three new naturaltetraploid hybrids and their origins have been found out: they are A. × longmenense ( = A. pekinense ×varians), A. × jingyunense (= A. pekinense × yunnanense) and A. × kidoi (= A. pekinense × wu-dangense ). Three other new natural triploid hybrids have been found and their origins have been inferred: theyare A. × huawuense (= A. sarelii × wudangense ), A. × luyunense (= A. lushanense × yunnanense )and A. × tenuivaians ( = A. tenuicaule × varians ) . The method of allozyme eomparion combined with cy-tological observation is employed to reveal the complicated relationships among the members of Asplenium sare-lii complex in reticulate evolution and proved to be a highly effective tool to investigate the origin of polyploidand hybrid.

  10. Differences in survival and growth in hatchery and stream environments, and in maturation of residuls in a stream, between progeny of hatchery and wild steelhead (Study sites: Brushy Fork Creek and Dworshak Hatchery; Stocks:Dworshak hatchery and Fish Creek wild; Year classes: 1992 and 1993): Chapter 1

    Science.gov (United States)

    Rubin, Stephen P.; Reisenbichler, Reginald R.; Wetzel, Lisa A.; Hensleigh, Jay E.; Leonetti,; Rubin, Stephen P.; Reisenbichler, Reginald R.; Wetzel, Lisa A.; Hayes, Michael C.

    2012-01-01

    Freshwater survival in hatchery and natural rearing environments was compared between progeny of hatchery (H) and wild (W) steelhead Oncorhynchus mykiss from the Clearwater River drainage in Idaho. Adults from Dworshak National Fish Hatchery and wild adults from Fish Creek fish were artificially spawned, and their progeny were genetically marked at the PEPA allozyme locus and released together as unfed fry in production facilities at the hatchery and in Brushy Fork Creek, also in the Clearwater River drainage, in a common garden design. Survival was higher for H than for W progeny at the hatchery but lower for H than for W progeny in Brushy Fork, indicating reduced fitness of the hatchery population for natural rearing and suggesting domestication as the cause. Survival at the hatchery was lower than is typical due to disease outbreaks. Survival of the first year-class of experimental fish to smolt release was only 18%. Survival of H fish was 3.8 times that of W fish under these poor survival conditions. All fish from the second year-class died halfway through the scheduled 10 month rearing period. Survival of H fish was 5.2 times that of W fish to when 1% of the initial fry were still alive indicating that W fish succumbed to the epizootic sooner than did H fish. Emigrants from the Brushy Fork study reach were sampled for three years and fish residing in the study reach were sampled for six years following fry release. Most emigrants were one or two years old and too small to be smolts (mean fork length at age-2 = 93 mm). Survival in Brushy Fork was lower for H than for W fish of the first year-class. Survival of the second year-class was higher for H than for W fish during the first two months in the stream but was lower for H than for W fish thereafter, and net survival from release to ages 3 and older was also lower for H than for W fish if our emigrant samples were representative (periods of inoperative emigrant traps prevented certainty about this

  11. Genetic differences between hatchery and wild steelhead for growth and survival in the hatchery and seaward migration after release (Study sites: Dworshak Hatchery and Clearwater Hatchery; Stocks: Dworshak hatchery and Selway River wild; Year classes: 1994 and 1995): Chapter 2

    Science.gov (United States)

    Rubin, Stephen P.; Reisenbichler, Reginald R.; Hensleigh, Jay E.; Wetzel, Lisa A.; Baker, Bruce M.; Rubin, Stephen P.; Reisenbichler, Reginald R.; Wetzel, Lisa A.; Hayes, Michael C.

    2012-01-01

    Various studies suggest that sea ranching of anadromous salmonids can result in domestication (increased fitness in the hatchery program) and a loss of fitness for natural production; however, the mechanism has not been characterized adequately. We artificially spawned hatchery and wild steelhead Oncorhynchus mykiss from the Clearwater River, Idaho, reared the resulting genetically marked (at the PEPA allozyme locus) progeny (HxH, HxW from hatchery females and wild males, and WxW) in hatcheries, and tested for differences in survival, growth, early maturation, downstream migration, and adult returns. Rearing treatments were mixed (crosses reared together) and separate (crosses reared separately from each other) at the hatchery of origin for the hatchery population where smolts are produced in one year, and at a nearby hatchery employing lower rations, lower winter temperatures, and two years of rearing to more closely mimic the natural life history (natural smolt age = 2-4 years). The hatchery population had been artificially propagated for six generations at the onset of our study. We found little or no difference in survival in the hatchery but substantially higher rates of growth and subsequent downstream migration for HxH than for WxW fish. Faster growth for HxH fish resulted in greater size at release which contributed to their higher migration rate, but other as yet uncharacterized traits also affected migration since the migration difference between crosses was apparent even within size classes. Growth of WxW fish was slower in the mixed than in the separate treatment indicating that WxW fish were competitively inferior to HxH fish in the hatchery environment. Incidence of precocious males was higher for WxW than for HxH fish in the separate but not in the mixed treatment. Incidence of HxH precocious males was similar between treatments. Apparently, the presence of HxH fish suppressed high incidence of early maturation by WxW males. A direct effect beyond

  12. Genetic variability in three species of Gymnotus Linnaeus, 1758 (Gymnotiformes: Gymnotidae from Caracu stream of the upper Paraná River basin, Brazil

    Directory of Open Access Journals (Sweden)

    Judy Ruiz Rezende

    2009-01-01

    Full Text Available The genetic variability of three Gymnotus species from the Caracu stream, a small tributary of the left margin of Paraná River (Brazilian upper Paraná River floodplain, was estimated with data of 17 putative allozyme loci, which were obtained by using corn starch gel electrophoresis of 10 enzymatic systems: Aspartate aminotransferase (E. C. 2.6.1.1, Alcohol dehydrogenase (E. C. 1.1.1.1, Esterase (E. C. 3.1.1.1, Glucose dehydrogenase (E. C. 1.1.1.118, Glycerol-3-phosphate dehydrogenase (E. C. 1.1.1.8, Isocitrate dehydrogenase (E. C. 1.1.1.42, L-Lactate dehydrogenase (E. C. 1.1.1.27, Malate dehydrogenase (E. C. 1.1.1.37, Superoxide dismutase (E. C. 1.15.1.1 and Sorbitol dehydrogenase (E. C. 1.1.1.14. The genetic diversity was estimated as He = 0.3458 for G. pantanal, He = 0.2481 for G. inaequilabiatus, and He = 0.3152 for G. sylvius. The most divergent species were G. sylvius and G. pantanal (D = 0.117, and the most similar were G. inaequilabiatus and G. pantanal (D = 0.051. The data indicates that the observed genetic variability was very low and the expected variability estimated for these three species is very high, and the genetic differences among them are small. The data suggest that the process of speciation which produced these three species is recent.A variabilidade genética de três espécies de Gymnotus do riacho Caracu, um pequeno afluente da margem esquerda do rio Paraná (planície de inundação do alto rio Paraná foi estimada com base em 17 loci aloenzimáticos, os quais foram obtidosutilizando eletroforese em gel de amido de milho em 10 sistemas enzimáticos: Aspartato aminotransferase (E. C. 2.6.1.1, Álcool desidrogenase (E. C. 1.1.1.1, Esterase (E. C. 3.1.1.1, Glicose desidrogenase (E. C. 1.1.1.118, Glicerol-3-fosfato desidrogenase (E. C. 1.1.1.8, Isocitrato desidrogenase (E. C. 1.1.1.42, L-Lactato desidrogenase (E. C. 1.1.1.27, Malato desidrogenase (E. C. 1.1.1.37, Superóxido dismutase (E. C. 1.15.1.1 e Sorbitol

  13. MATING SYSTEM OF BRUGUIERA GYMNORRHIZA POPULATIONS OF MANGROVE, CHINA%红树植物木榄(Bruguiera gymnorrhiza)种群的交配系统

    Institute of Scientific and Technical Information of China (English)

    葛菁萍; 林鹏

    2001-01-01

    We investigated genotypic variation in 4 Bruguiera gymnorrhiza (mangrove) populations using horizontal sliceable gel electrophoresis for polymorphic loci of allozymes as a genetic marker. Mating system was also investigated with MLT. The four populations studied were located between 24°24′N and 19°51′N on the Chinese coast at (from N to S) Fugong (Fujian), Futian (Guangdong), Shankou(Guangxi) and Dongzhai Horbor (Hainan). The polymorphic loci selected for analysis differed among the four populations:Mdh-1, Mdh-2,Me-1 in Fugong, Guangxi and Hainan and Mdh-1,Mdh-2,Aat-1,Aat-2 in Shenzhen. A strong difference in outcrossing rates of polymorphic loci was found: Fugong, at 0.845, had the highest rate while Hainan, 0.267, was the smallest. The difference between outcrossing rates of polymorphic loci and the mean outcrossing rates of monomorphic loci in these four areas also varied, showing slight biparental inbreeding in the mating system of the Fugong, Guangxi and Hainan populations but random crossing in the Guangxi population. We conclude the Bruguiera gymnorrhiza is a mixed-mating species and the mating system is mainly outcrossing.This is influenced by factors such as plant population density and structure and the adaptability of pollinator as well the presence or absence of self-incompatibility mechanisms.%利用等位酶多态位点作遗传标记,采用水平切片淀粉凝胶电泳技术检测了我国福建浮宫(24°24′)、广东深圳福田(22°32′)、广西山口合浦(21°28′)和海南东寨港(19°51′)4个红树植物分布区内木榄种群的基因型,进而利用多位点异交率估测程序(MLT)估测其交配系统。所用多态酶位点在浮宫、广西、海南均为Mdh-1、Mdh-2、Me-1,在深圳为Mdh-1、Mdh-2、Aat-1、Aat-2。结果表明:各种群多态位点异交率之间有很大差别,浮宫种群最大,为0.845;海南种群最小,为0.267。多位点异交率与单位点异交率平

  14. Genetic variability in chronic irradiated plant populations - Polymorphism and activity of antioxidant enzymes in chronic irradiated plant populations

    Energy Technology Data Exchange (ETDEWEB)

    Volkova, Polina Y.; Geras' kin, Stanislav A. [Russian Institute of Agricultural Radiology and Agroecology, 249030, Obninsk, Kievskoe shosse 109 km (Russian Federation)

    2014-07-01

    . We used index of phenotypic diversity (μ) for comparison phenotypic diversity in populations. Indexes of phenotype diversity in this populations significantly different from reference site. In order to detail allozyme structure of population we estimated proportion of rare morphs. It is shown that proportion of rare morphs is increased with rise of level anthropogenic impact. Observed and expected heterozygosity values increase with the level of radioactive contamination. There were null-mutations without protein biosynthesis in experiment. We observed significant increase of null-mutations frequency in populations from experimental sites. We obtained data about enzyme activity in studied populations. Catalase activity has significant difference from reference on site SB. Superoxide dismutase activity has not any significant changes on study sites. Peroxidase activity decrease on the most contaminated sites. It was showed that chronic radiation exposure increased general mutation frequency and proportion of rare morphs antioxidant enzymes in studied populations. So far as mutational events in seeds of Scots pine relatively rare, they doesn't make a significant contribution to observed enzymes activities. In whole our study suggests that present dose rates insufficient for form significant changes on physiological level, in spite of revealed changing in genetic structure of populations. (authors)

  15. Phytophthora infestans POPULATION STRUCTURE: A WORLDWIDE SCALE Estructura poblacional de Phytophthora infestans: una escala global

    Directory of Open Access Journals (Sweden)

    MARTHA CÁRDENAS

    2012-05-01

    Full Text Available Phytophthora infestans, the causal agent of late blight disease in potato and other members of the Solanaceae family, is responsible for causing the Irish potato famine and, even today, it causes enormous economic losses all over the world. For the establishment of an adequate pest management strategy, the determination of the pathogen's population structure is required. To characterize P. infestans populations worldwide two allozymes, Gpi (Glucose-6-phospate isomerase and Pep ( Pep tidase, the RG57 DNA RFLP fingerprinting probe, as well as resistance to the fungicide metalaxyl and mating type, have been used as markers. P. infestans populations in Mexico have been one of the main focuses of research in the population biology of this pathogen because this country has been considered as one of the possible centers of origin of this oomycete. In this review we present the population structure of P. infestans in Mexico, Europe, Africa, Asia, North America, and South America, expanding it on the present situation of P. infestans in Colombia. Finally, we will discuss different lines of research that are being carried out today with respect to P. infestans in Colombia, which have shown the importance of continuing the study of this devastating plant pathogen in our country.Phytophthora infestans, el agente causal del tizón tardío de la papa y otros miembros de la familia de las Solanáceas, es el responsable de la gran hambruna irlandesa y aún hoy sigue causando grandes pérdidas económicas alrededor del planeta. Para establecer estrategias de control adecuadas contra este patógeno se requiere comprender la estructura poblacional del mismo. Mundialmente se han utilizado como marcadores las aloenzimas, Gpi (Glucosa-6-fosfato isomerasa y Pep (Peptidasa y la sonda de fingerprinting de RFLP (Polimorfismos de la Longitud de los Fragmentos de Restricción, RG57. De igual forma, la resistencia al fungicida metalaxyl y el tipo de apareamiento, han sido

  16. Clonality and its population genetic conseuqneces in seagrasses%海草克隆性及其种群遗传效应

    Institute of Scientific and Technical Information of China (English)

    苗苑; 徐娜娜; 于硕; 耿艳; 陈小勇

    2009-01-01

    influences on genetic variation of seagrasses. Generally, seagrass species have relatively lower within-population genetic variation than terrestrial plants or mangroves, another group of marine flowering plants, although DNA markers, such as microsatellites, have revealed much higher variation than allozymes did and higher than that of previous thought in seagrasses. High variation in clonal diversity was found in many seagrass populations, but single or few genotypes were also found in some populations due to founder effect and strong clonality. Although gene flow usually was thought to be restricted in clonal species, it was reported that clonal fragments may be transported to a long distance and therefore to promote gene flow among populations. Effects of clonality on within-population structuring and mating system were also reviewed.

  17. pcDNA3.1(+)-CYP19-GFP真核表达质粒构建%Construction of eukaryotic expression plasmids containing green fluorescent protein gene and CYP19 WT or its variants

    Institute of Scientific and Technical Information of China (English)

    邵喜英; 陈占红; 曹江; 方永明; 王晓稼

    2011-01-01

    Objective: To construct eukaryotic expression plasmids containing green fluorescent protein gene and CYP19 wild-type or its vatiants (W39R, R264C, W39R-R264C) and to observe its expression in MCF-7 and Bcap-37 cells. Methods: The aromatase WT cDNA sequence was obtained by RT-PCR amplification and cloned into the eukaryotic expression vector pcDNA3. 1 ( + ). pcDNA3. 1 ( + )-CYP19-GFP plasmid was then used as the template for site-directed mutation to create variant constructs (W39R, R264C, W39R-R264C). pcDNA3. 1 ( + )-CYP19-GFP was transfected and expressed in MCF-7 and Bcap-37 cells. Results: The construction of pcDNA3. 1 ( + )-CYP19-GFP plasmid was confirmed by enzyme digestion and DNA sequencing. pcDNA3. 1 ( + )-CYP19W39R-GFP,pcDNA3.1 ( + )-CYP19R264C-GFP, pcDNA3.1 ( + )- CYP19W39R-R264C-GFP plasmids were confirmed by DNA sequencing. The MCF-7 and Bcap-37 cells transfected with the pcDNA3. 1 ( + )-CYP19-GFP plasmid expressed reporter gene of GFP. Conclusion: The eukaryotic expression plasmids have been constructed and expressed in MCF-7 and Bcap-37 cells successfully, which lays the foundation for the research of biological activities of CYP19 variant allozymes.%目的:构建pcDNA3.1(+)-CYP19-GFP、pcDNA3.1(+)-CYP19W39R-GFP、pcDNA3.1(+)-CYP19R264C-GFP与pcDNA3.1(+)-CYP19W39R-R264C-GFP真核表达质粒,并观察pcDNA3.1(+)-CYP19-GFP质粒在MCF-7和Bcap-37细胞中的表达.方法:①采用RT-PCR技术扩增CYP19 cDNA,插入pcDNA3.1(+)载体中,构建pcDNA3.1(+)-CYPl9表达质粒;酶切pcDNA3.1(+)-CYP19(304bp BamH I)-GFP和pcDNA3.1(+)-CYP19质粒,构建pcDNA3.1(+)-CYP19-GFP表达质粒;②以pcDNA3.1(+)-CYP19-GFP质粒为模板,采用定点突变技术,构建pcDNA3.1(+).CYPl9W39R-GFP和pcDNA3.1(+).CYP19R264C-GFP及pcDNA3.1(+).CYP19W39R-R264C-GFP表达质粒;③pcDNA3.1(+)-CYP19-GFP质粒通过脂质体介导转染MCF-7和Bcap-37细胞,荧光显微镜观察其在细胞中的表达.结果:①酶切鉴定及测序验证pcDNA3.1(+)-CYP19-GFP构

  18. Variabilidad genética y morfológica y estructuración poblacional en Alstroemeria hookeri subsp. hookeri (Alstroemeriaceae, endémica de Chile Genetic and morphological variation and population structure in Alstroemeria hookeri subsp. hookeri (Alstroemeriaceae, endemic to Chile

    Directory of Open Access Journals (Sweden)

    EDUARDO RUIZ

    2010-12-01

    geographic ranges, with characters that contribute to this separation. The genetic variability Índices were estimated using 17 allozymic loci. We estimated population structure and also carried out an AMOVA analysis. Nei's genetic distances among all population pairs were estimated to obtain a dendrogram showing the genetic similarity relationships. The results indicate high levéis of genetic structure and low valúes of within population genetic diversity were found. The results of AMOVA indicate that the variability occurs mainly among populations. However, these results varied when populations from both geographic ranges were separately analyzed. The genetic similarities are not congruent with the morphological divergence between both geographic ranges, indicating that some populations from Central Valley are more related genetically to some from coastal populations than populations from their own geographic range.

  19. 大口黑鲈微卫星DNA指纹图谱的构建和遗传结构分析%ESTABLISHMENT OF DNA FINGERPRINTING AND ANALYSIS ON GENETIC STRUCTURE OF LARGEMOUTH BASS WITH MICROSATELLITE

    Institute of Scientific and Technical Information of China (English)

    樊佳佳; 白俊杰; 李胜杰; 任坤; 叶星

    2012-01-01

    allozymes in recent years as the genetic markers of choice for many biological problems including parentage assessment, genomic mapping and establishment DNA fingerprinting. Largemouth bass (Micropterus sal-moides) was introduced from Taiwan to Guangdong province of China in 1983, because of delicious taste, fast growth, and wide temperature tolerance, it has been bred in many region of China as a main cultured fish species with annual production of 100,000 tons. The largemouth bass consists of two subspecies, the Florida largemouth bass (M. s. floridanus), which is native to peninsular Florida, and the northern largemouth bass (M. s. salmoides), whose native range extends throughout the central and eastern U.S. as well as northeastern Mexico and southeastern Canada. Research shows that largemouth bass cultured in china attribute to the northern largemouth bass (M .s. salmoides). In this paper, the microsatellite DNA fingerprinting of four largemouth bass populations was established, including cultured stock of M. salmoides in China (CH), M. s. floridanus was introduced in 2009 (FL-09), M. s. floridanus was introduced in 2010 (FL-10) and M. s. salmoides was introduced in 2010 (NT-10), and the genetic structure of them was analyzed by 43 microsatellite markers. The results showed that a total of 246 alleles were obtained from the four largemouth bass populations, and the alleles ranged from 2-13 in each locus. The mean value of number on alleles (A) and the mean value of expected heterozygosity (He) were calculated by popgene 3.2 software. The result was that the mean value of number on alleles {A) of CH, FL-09, FL-10 and NT-10 was 2.58, 3.74, 3.70 and 4.21, the mean value of expected heterozygosity (He) was 0.4549, 0.4896, 0.5010 and 0.6138, and the mean value of polymorphism information content (PIC) was 0.3786, 0.4443, 0.4566 and 0.5546, respectively. It indicated that the genetic diversity of cultured stock on largemouth bass in China was lower than that of introduced

  20. Coadaptation: lessons from the brine shrimp Artemia, "the aquatic Drosophila" (Crustacea; Anostraca Coadaptación: lecciones desde el camarón de salmuera Artemia, "la Drosophila acuática" (Crustacea; Anostraca

    Directory of Open Access Journals (Sweden)

    GONZALO GAJARDO

    2001-03-01

    Full Text Available During the fifties Brncic and the Dobzhansky's school, using the fruit fly Drosophila as a test organism, introduced the term integration of the genotype, or genetic coadaptation, which has had great impact on thinking in today's evolutionary biology. In this work we use the brine shrimp Artemia - in many respects a sort of aquatic Drosophila- as a model organism to evaluate the relationship between population structure, potential for divergence and the degree of morphological and/or genetic change. These aspects, tightly linked with the organization of the genotype, are important to understanding how recombination and adaptive release of genetic and phenotypic variation affect the speciation process in Artemia. Analysis of genetic (allozyme, diploid and chromocentre numbers, morphological (Mahalanobis distances and reproductive data (cross-fertility tests available for populations of the bisexual, endemic species of the Americas, Artemia franciscana and A. persimilis, indicate that: (i A. franciscana and A. persimilis are morphologically distinct in correspondence with observed genetic differences (D Nei > 1; 2n = 42 and 44; 12.5 and 1.5 mean chromocentre numbers, respectively; (ii populations from Chile and other South American localities (mainly A. franciscana display high levels of genetic variability and a trend to develop large genetic distances between populations; (iii the plasticity of Artemia gene pool is associated, at least in part, with ecological heterogeneity. Hence an adaptive divergence mode is thought to best define the speciation process in Artemia; (iv the succesful production of laboratory hybrids in the allopatric Artemia populations studied in the Americas, a feature seen in other anostracods, could be explained by the fact that formerly allopatric populations have not achieved later sympatry, as required by the allopatric speciation paradigmEn los años cincuenta Brncic y la escuela de Dobzhansky introdujeron el t

  1. Hierarchical structure of genetic distances: Effects of matrix size, spatial distribution and correlation structure among gene frequencies

    Directory of Open Access Journals (Sweden)

    Flávia Melo Rodrigues

    1998-06-01

    Full Text Available Geographic structure of genetic distances among local populations within species, based on allozyme data, has usually been evaluated by estimating genetic distances clustered with hierarchical algorithms, such as the unweighted pair-group method by arithmetic averages (UPGMA. The distortion produced in the clustering process is estimated by the cophenetic correlation coefficient. This hierarchical approach, however, can fail to produce an accurate representation of genetic distances among populations in a low dimensional space, especially when continuous (clinal or reticulate patterns of variation exist. In the present study, we analyzed 50 genetic distance matrices from the literature, for animal taxa ranging from Platyhelminthes to Mammalia, in order to determine in which situations the UPGMA is useful to understand patterns of genetic variation among populations. The cophenetic correlation coefficients, derived from UPGMA based on three types of genetic distance coefficients, were correlated with other parameters of each matrix, including number of populations, loci, alleles, maximum geographic distance among populations, relative magnitude of the first eigenvalue of covariance matrix among alleles and logarithm of body size. Most cophenetic correlations were higher than 0.80, and the highest values appeared for Nei's and Rogers' genetic distances. The relationship between cophenetic correlation coefficients and the other parameters analyzed was defined by an "envelope space", forming triangles in which higher values of cophenetic correlations are found for higher values in the parameters, though low values do not necessarily correspond to high cophenetic correlations. We concluded that UPGMA is useful to describe genetic distances based on large distance matrices (both in terms of elevated number of populations or alleles, when dimensionality of the system is low (matrices with large first eigenvalues or when local populations are separated

  2. The population genetic consequences of range expansion:a review of pattern and process,and the value of oak gallwasps as a model system%分布区扩张的群体遗传学后果:类型与过程,以栎瘿蜂为模型系统(英)

    Institute of Scientific and Technical Information of China (English)

    2002-01-01

    .We summarise a growing range of population genetic techniques that allow large changes in population size (bottlenecks and population expansions) to be inferred over a range of timescales.Finally,we illustrate some of the approaches described using data for a suite of invasions by oak gallwasps (Hymenoptera,Cynipidae,Cynipini) in Europe.We show that over timescales ranging from 500~10000 years,allele frequency data for polymorphic allozymes reveal (a) a consistent loss of genetic diversity along invasion routes,confirming the role of glacial refugia as centres of genetic diversity over these timescales,and (b) that populations in the invaded range are more subdivided genetically than those in the native range of each species.This spatial variation in population structure may be the result of variation in the patchiness of resources exploited by gallwasps,particularly host oak plants.

  3. 大竹蛏5个野生群体遗传多样性的微卫星分析%Microsatellite analysis of genetic diversity of five wild populations of Solen grandis (Dunker)

    Institute of Scientific and Technical Information of China (English)

    张志伟; 张雨; 陈爱华; 张志勇; 陆勤勤; 张朝晖; 姚国兴; 蔡永祥; 吴杨平; 曹奕

    2015-01-01

    The grand jackknife clam Solen grandis (Dunker, 1861) is a commercial marine bivalve that is found in coastal waters of China, Japan, and Korea from the shallow subtidal to depths of 20 m. It has high nutritive and medical value according to traditional Chinese medicine. In addition, it is adaptable and has high growth rates and great market potential. Currently, this clam is only available from natural sources. Over the last few decades, however, overfishing and environmental pollution have caused dramatic declines in natural stocks of S. grandis, and production is low and unstable. Fortunately, methods of artificial breeding and cultivation of the jackknife clam are developing. Previous studies on S. grandis focused primarily on morphological and ecological characteristics, allozyme analysis, and evalua-tion of its nutrition components. Little is known about the molecular ecology of S. grandis or its genetic background. Thus, it is important to evaluate genetic differences among populations along the coast of China. In this study, 14 mi-crosatellite DNA markers were used to examine the genetic diversity and differentiation among five wild populations of the grand jackknife clam. A total of 150 samples were collected from Dandong (DD) in Liaoning Province, Qinhuang-dao (QHD) in Hebei Province, Rizhao (RZ) in Shandong Province, Lyusi (LS) in Jiangsu Province, and Beihai (BH) in Guangxi Province. Comparisons of 199 alleles among the five populations showed that, in the fourteen loci, polymor-phism information content (PIC)values ranged from 0.696 to 0.853 with high polymorphism. The number of alleles ranged from 8 to 22 and the average number (AM) and richness(AR) of alleles were 14.2 and 11.05, respectively. Ex-pected (He) and observed heterozygosity (Ho) ranged 0.769–0.826 and 0.809–0.858, respectively, suggesting high levels of genetic diversity in all populations. Only the Sg16 locus in the DD population deviated significantly from Hardy-Weinberg equilibrium

  4. Ten years of demographic and genetic monitoring of Stachys maritima in Catalonia (2001-2010. Implications for a recovery plan

    Directory of Open Access Journals (Sweden)

    Massó, S.

    2010-12-01

    Full Text Available Stachys maritima is a species typical of the coastal dunes, with a wide distribution within the Mediterranean Basin. In spite of this, the species shows a clear regression. In Catalonia, it has been observed an important reduction of its populations since early 20th century, where it has disappeared from several localities in which it was relatively common (Tarragonès, Barcelonès. Herein we present the results of the demographic monitoring of the species during the last 10 years (2001-2010 in the known localities in Catalonia. Besides corroborating the disappearance (northern Sant Martí d’Empúries, the re-discovering (Llobregat Delta beach and the detection of new populations (inner dunes of the Montgrí, a large year-to-year fluctuation of the monitored populations is stated; the possible reasons are discussed. In addition, the present work also includes the results of the allozyme diversity analysis of the new detected populations as well as the rediscoveries of the period 2004-2008, which were not included in a former study of genetic diversity carried out in 2002-2003. It is necessary to emphasize that the contribution of the new populations to the genetic diversity of Stachys maritima is very small, which can be attributed to their limited population size and /or to founder effects. Despite that the species is included in the Annex 2 (“En Perill d’Extinció” within the Catàleg de Flora Amenaçada de Catalunya (Catalogue of Endangered Flora of Catalonia, and some “soft” conservation measures have been applied at local level (signposting of the beach accesses, environmental education, etc. coupled with other more significant measures (e.g. translocation of individuals discovered in an artificial sandbank, it would be necessary the coordinated action and the scientific support of any initiative of conservation that could be carried out. The general frame to initiate actions of conservation should be the recovery plan of

  5. 论我国兴安落叶松、长白落叶松及华北落叶松种间遗传进化关系%ON EVOLUTIONARY RELATIONSHIPS AMONG THREE LARIX TAXA IN CHINA:L.GMELINII(RUPR.)RUPR,L.OLGENSIS HENRY AND L. PRINCIPIS-RUPPRECHTII MAYR

    Institute of Scientific and Technical Information of China (English)

    1999-01-01

    析种间的进化关系(Phylogeny Re-construction),及线粒体DNA的母本遗传方式特点,但可以用群体遗传结构的研究。稀有标记的空间分布有助于进一步判断落叶松群体的形成路径和历史。%The three taxa of the genus, Larix gmelinii(Rupr.)Rupr, L.olgensis Henry and L.principis-rupprechtii Mayr., are very important timber species in China. However, the classification of these three taxa has been very arguable because different traits are employed by different authors. Thus, elucidation of their genetic relationships is of great singnificance in practice, such as the potential utility of heterosis between the taxa. Recent studies assessed using allozymes and cpDNA markers showed that there were very closely genetic relationships among the three taxa, implying that their divergences probably occurred very recently. In this review the probable process for the formation of L.olgensis and L.principis-rupprechtii was discussed in detail, including possible routes, the time scale for divergence and the definition of species. According to the concept of biological species and the genetic variation of different traits, it would be more reasonable to consider L.olgensis and L.principis-rupprechtii to be two varieties of L.gmelinii other than two separate species.

  6. 生物科学%Biological Science

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    Q145 01050332 物种与物种多样性=Species and Species Diversity[刊, 中]/周红章(中科院动物所)∥生物多样性.&2000, 8(2).&215~226 分析了物种客观存在的自然属性和物种概念的局限性,认为物种的生物学属性和物种多样性的科学属性之间有着本质联系.参47 国家自然科学基金"九五”重大项目(39893360)资助 Q178 01050333 同工酶和RAPD分析用于中华绒螯蟹的基因分类=Genetic Differention within Eriochoir Sinensis (Milne, Edwards) Revealed by Allozyme and RAPD[刊, 英]/崔朝霞(中科院海洋所),相建海…∥Chinese Journal of Oceanology and Limnology.&2000, 18(3).&234~240 国家自然科学基金(39470141)资助 Q178 01050334 海洋微藻对重金属的吸附研究进展=A Review of Heavy Metal Adsorption by Microalgae[刊, 英]/潘进芬(中科院海洋所),林荣根…∥Chinese Journal of Oceanology and Limnology.&2000, 18(3).&260~264 国家自然科学基金(29677020)资助 Q178 01050335 台湾海峡南部漂浮植物=Phytoneuston in the Southern Taiwan Strait[刊, 中]/黄加祺(厦门大学),李少菁…∥海洋学报.&2000, 22(4).&67~73 国家自然科学基金重点项目(49636220)资助 Q178 01050336 4种海洋微藻对久效磷的抗性与其抗氧化能力的相关性=Relationship between Monocrotophos Resistance and Antioxidization in Four Species of Marine Microalgae[刊, 中]/唐学玺(青岛海洋大学),李永祺∥海洋与湖沼.&2000, 31(4).&414~418 国家攀登计划B资助 Q189 01050337 不同功能位点介导α干扰素的免疫调节和中枢镇痛作用=Distinct Structural Bases of the Immunoregulatory and Central Analgesic Effects of IFNα[刊, 中]/王云霞(第二军医大学),蒋春雷…∥生理学报.&2000, 52(3).&203~206 实验结果表明,IFNα分子存在着相互独立的免疫和镇痛两个功能位点,分别介导免疫调节作用和中枢镇痛作用.图3表1参8 国家自然科学基金(39570669)资助 Q245 01050338 新型小