WorldWideScience

Sample records for accelerating structure assemblies

  1. Assembly Test of Elastic Averaging Technique to Improve Mechanical Alignment for Accelerating Structure Assemblies in CLIC

    CERN Document Server

    Huopana, J

    2010-01-01

    The CLIC (Compact LInear Collider) is being studied at CERN as a potential multi-TeV e+e- collider [1]. The manufacturing and assembly tolerances for the required RF-components are important for the final efficiency and for the operation of CLIC. The proper function of an accelerating structure is very sensitive to errors in shape and location of the accelerating cavity. This causes considerable issues in the field of mechanical design and manufacturing. Currently the design of the accelerating structures is a disk design. Alternatively it is possible to create the accelerating assembly from quadrants, which favour the mass manufacturing. The functional shape inside of the accelerating structure remains the same and a single assembly uses less parts. The alignment of these quadrants has been previously made kinematic by using steel pins or spheres to align the pieces together. This method proved to be a quite tedious and time consuming method of assembly. To limit the number of different error sources, a meth...

  2. Pulsed neutron source based on accelerator-subcritical-assembly

    Energy Technology Data Exchange (ETDEWEB)

    Inoue, Makoto; Noda, Akira; Iwashita, Yoshihisa; Okamoto, Hiromi; Shirai, Toshiyuki [Kyoto Univ., Uji (Japan). Inst. for Chemical Research

    1997-03-01

    A new pulsed neutron source which consists of a 300MeV proton linac and a nuclear fuel subcritical assembly is proposed. The proton linac produces pulsed spallation neutrons, which are multipied by the subcritical assembly. A prototype proton linac that accelerates protons up to 7MeV has been developed and a high energy section of a DAW structure is studied with a power model. Halo formations in high intensity beam are also being studied. (author)

  3. Plasma-based accelerator structures

    Energy Technology Data Exchange (ETDEWEB)

    Schroeder, Carl B.

    1999-12-01

    Plasma-based accelerators have the ability to sustain extremely large accelerating gradients, with possible high-energy physics applications. This dissertation further develops the theory of plasma-based accelerators by addressing three topics: the performance of a hollow plasma channel as an accelerating structure, the generation of ultrashort electron bunches, and the propagation of laser pulses is underdense plasmas.

  4. Plasma-based accelerator structures

    International Nuclear Information System (INIS)

    Plasma-based accelerators have the ability to sustain extremely large accelerating gradients, with possible high-energy physics applications. This dissertation further develops the theory of plasma-based accelerators by addressing three topics: the performance of a hollow plasma channel as an accelerating structure, the generation of ultrashort electron bunches, and the propagation of laser pulses is underdense plasmas

  5. Important concepts in the assembly and early characterization of the PBFA 2 accelerator

    Science.gov (United States)

    Goldstein, S. A.; Clevenger, R. J.; Donovan, G. L.; Holman, G. T.; Johnston, R. R.; Nations, D. R.

    Some of the concepts for orchestrating large numbers of events associated with accelerator assembly and characterization include: (1) structuring of activity into smaller workable and trackable packages, with associated subelements assigned to each section of the accelerator, (2) establishing detailed assembly and characterization documentation to assist in component testing and subsystem integration, (3) structuring the project team for efficient communication, identification of responsibility, and capability for problem and conflict resolution, and (4) developing technologies for receival, inventory, controlled storage, staging, and phased installation and testing of components and pieceparts. The application of these and other concepts to PBFA II, and the progress of accelerator assembly is discussed.

  6. Fuel assembly supporting structure

    International Nuclear Information System (INIS)

    For use in forming the core of a pressurized-water reactor, a fuel assembly supporting structure for holding a bundle of interspaced fuel rods, is formed by interspaced end pieces having holes in which the end portions of control rod guide tubes are inserted, fuel rod spacer grids being positioned by these guide tubes between the end pieces. The end pieces are fastened to the end portions of the guide tubes, to integrate the supporting structure, and in the case of at least one of the end pieces, this is done by means which releases that end piece from the guide tubes when the end pieces receive an abnormal thrust force directed towards each other and which would otherwise place the guide tubes under a compressive stress that would cause them to buckle. The spacer grids normally hold the fuel rods interspaced by distances determined by nuclear physics, and buckling of the control rod guide tubes can distort the fuel rod spacer grids with consequent dearrangement of the fuel rod interspacing. A sudden loss of pressure in a pressurized-water reactor pressure vessel can result in the pressurized coolant in the vessel discharging from the vessel at such high velocity as to result in the abnormal thrust force on the end pieces of each fuel assembly, which could cause buckling of the control rod guide tubes when the end pieces are fixed to them in the normal rigid and unyielding manner

  7. Important concepts in the assembly and early characterization of the PBFA II accelerator

    International Nuclear Information System (INIS)

    Planning and efficient execution of the assembly and early characterization phases of a large, multi-module superpower generator like PBFA II require development of concepts frequently not found in either the pulsed power RandD community or in the pulsed power industry. To meet the constraints of performance, cost, and schedule of the PBFA II Project, special skills for assembly and characterization of large facilities are being established. These likely will become the technology for activating Sandia's future large accelerators. Some of the concepts for orchestrating large numbers of events associated with accelerator assembly and characterization include: structuring of activity into smaller workable and trackable packages, with associated subelements assigned to each section of the accelerator, and establishing detailed assembly and characterization documentation to assist in component testing and subsystem integration. The application of these and other concepts to FBFA II, and the progress of accelerator assembly are discussed

  8. Trapping of Hepatitis B Virus capsid assembly intermediates by phenylpropenamide assembly accelerators

    OpenAIRE

    Katen, Sarah P.; Chirapu, Srinivas Reddy; Finn, M.G.; Zlotnick, Adam

    2010-01-01

    Understanding the biological self-assembly process of virus capsids is key to understanding the viral life cycle, as well as serving as a platform for the design of assembly-based antiviral drugs. Here we identify and characterize the phenylpropenamide family of small molecules, known to have antiviral activity in vivo, as assembly effectors of the Hepatitis B Virus (HBV) capsid. We have found two representative phenylpropenamides to be assembly accelerators, increasing the rate of assembly w...

  9. Accelerator structure work for NLC

    Energy Technology Data Exchange (ETDEWEB)

    Miller, R.H.; Adolphsen, C.; Bane, K.L.F.; Deruyter, H.; Farkas, Z.D.; Hoag, H.A.; Holtkamp, N.; Lavine, T.; Loew, G.A.; Nelson, E.M.; Palmer, R.B.; Paterson, J.M.; Ruth, R.D.; Thompson, K.A.; Vlieks, A.; Wang, J.W.; Wilson, P.B. [Stanford Linear Accelerator Center, Menlo Park, CA (United States); Gluckstern, R. [Maryland Univ., College Park, MD (United States); Ko, K.; Kroll, N. [Stanford Linear Accelerator Center, Menlo Park, CA (United States)]|[California Univ., San Diego, La Jolla, CA (United States). Dept. of Physics

    1992-07-01

    The NLC design achieves high luminosity with multiple bunches in each RF pulse. Acceleration of a train of bunches without emittance growth requires control of long range dipole wakefields. SLAC is pursuing a structure design which suppresses the effect of wakefields by varying the physical dimensions of successive cells of the disk-loaded traveling wave structure in a manner which spreads the frequencies of the higher mode while retaining the synchronism between the electrons and the accelerating mode. The wakefields of structures incorporating higher mode detuning have been measured at the Accelerator Test Facility at Argonne. Mechanical design and brazing techniques which avoid getting brazing alloy into the interior of the accelerator are being studied. A test facility for high-power testing of these structures is complete and high power testing has begun.

  10. Self-assembling peptide nanofiber scaffolds accelerate wound healing.

    Directory of Open Access Journals (Sweden)

    Aurore Schneider

    Full Text Available Cutaneous wound repair regenerates skin integrity, but a chronic failure to heal results in compromised tissue function and increased morbidity. To address this, we have used an integrated approach, using nanobiotechnology to augment the rate of wound reepithelialization by combining self-assembling peptide (SAP nanofiber scaffold and Epidermal Growth Factor (EGF. This SAP bioscaffold was tested in a bioengineered Human Skin Equivalent (HSE tissue model that enabled wound reepithelialization to be monitored in a tissue that recapitulates molecular and cellular mechanisms of repair known to occur in human skin. We found that SAP underwent molecular self-assembly to form unique 3D structures that stably covered the surface of the wound, suggesting that this scaffold may serve as a viable wound dressing. We measured the rates of release of EGF from the SAP scaffold and determined that EGF was only released when the scaffold was in direct contact with the HSE. By measuring the length of the epithelial tongue during wound reepithelialization, we found that SAP scaffolds containing EGF accelerated the rate of wound coverage by 5 fold when compared to controls without scaffolds and by 3.5 fold when compared to the scaffold without EGF. In conclusion, our experiments demonstrated that biomaterials composed of a biofunctionalized peptidic scaffold have many properties that are well-suited for the treatment of cutaneous wounds including wound coverage, functionalization with bioactive molecules, localized growth factor release and activation of wound repair.

  11. Damped and detuned accelerator structures

    Energy Technology Data Exchange (ETDEWEB)

    Deruyter, H.; Farkas, Z.D; Hoag, H.A.; Ko, K.; Kroll, N.; Loew, G.A.; Miller, R.; Palmer, R.B.; Paterson, J.M.; Thompson, K.A.; Wang, J.W.; Wilson, P.B.

    1990-09-01

    This paper reports continuing work on accelerator structures for future TeV linear colliders. These structures, in addition to having to operate at high gradients, must minimize the effects of wakefield modes which are induced by e{sup {plus minus}} bunch trains. Two types of modified disk-loaded waveguides are under investigation: damped structures in which the wakefield power is coupled out to lossy regions through radial slots in the disks and/or azimuthal rectangular waveguides, whereby the external Q of the undesirable HEM{sub 11} mode is lowered to values below 20, and detuned structures in which the frequencies of these modes are modified from one end to the other of each section by {approximately}10%, thereby scrambling their effects on the beam. Beam dynamics calculations indicate that these two approaches are roughly equivalent. MAFIA, ARGUS and URMEL codes have been used extensively in conjunction with low-power tests on S- and X-band models to identify mode patterns, dispersion curves and Q values, and to demonstrate damping or detuning of the HEM modes. Results of calculations and measurements on the various structures are presented and evaluated.

  12. Ion acceleration in a scalable MEMS RF-structure for a compact linear accelerator

    CERN Document Server

    Persaud, A; Feinberg, E; Seidl, P A; Waldron, W L; Lal, A; Vinayakumar, K B; Ardanuc, S; Schenkel, T

    2016-01-01

    A new approach for a compact radio-frequency(rf) accelerator structure is presented. The idea is based on the Multiple Electrostatic Quadrupole Array Linear Accelerator (MEQALAC) structure that was first developed in the 1980s. The MEQALAC allowed scaling of rf-structure down to dimensions of centimeters while at the same time allowing for higher beam currents through parallel beamlets. Using micro-electro-mechanical systems (MEMS) for highly scalable fabrication, we reduce the critical dimension to the sub-millimeter regime, while massively scaling up the potential number of parallel beamlets. The technology is based on rf-acceleration components and electrostatic quadrupoles (ESQs) implemented in a silicon wafer based design where each beamlet passes through beam apertures in the wafer. The complete accelerator is then assembled by stacking these wafers. This approach allows fast and cheap batch fabrication of the components and flexibility in system design for different applications. For prototyping these ...

  13. EM Structure Based and Vacuum Acceleration

    Energy Technology Data Exchange (ETDEWEB)

    Colby, E.R.; /SLAC

    2005-09-27

    The importance of particle acceleration may be judged from the number of applications which require some sort of accelerated beam. In addition to accelerator-based high energy physics research, non-academic applications include medical imaging and treatment, structural biology by x-ray diffraction, pulse radiography, cargo inspection, material processing, food and medical instrument sterilization, and so on. Many of these applications are already well served by existing technologies and will profit only marginally from developments in accelerator technology. Other applications are poorly served, such as structural biology, which is conducted at synchrotron radiation facilities, and medical treatment using proton accelerators, the machines for which are rare because they are complex and costly. Developments in very compact, high brightness and high gradient accelerators will change how accelerators are used for such applications, and potentially enable new ones. Physical and technical issues governing structure-based and vacuum acceleration of charged particles are reviewed, with emphasis on practical aspects.

  14. Traveling Wave Accelerating Structure for a Superconducting Accelerator

    CERN Document Server

    Kanareykin, Alex; Solyak, Nikolay

    2005-01-01

    We are presenting a superconducting traveling wave accelerating structure (STWA) concept, which may prove to be of crucial importance to the International Linear Collider. Compared to the existing design of a TESLA cavity, the traveling wave structure can provide ~20-40% higher accelerating gradient for the same aperture and the same peak surface magnetic RF field. The recently achieved SC structure gradient of 35 MV/m can be increased up to ~50 MV/m with the new STWA structure design. The STWA structure is supposed to be installed into the superconducting resonance ring and is fed by the two couplers with appropriate phase advance to excite a traveling wave inside the structure. The system requires two independent tuners to be able to adjust the cavity and feedback waveguide frequencies and hence to reduce the unwanted backward wave. In this presentation we discuss the structure design, optimization of the parameters, tuning requirements and plans for further development.

  15. Development of S-band accelerating structure

    International Nuclear Information System (INIS)

    In Pohang Accelerator Laboratory (PAL) in Korea construction of XFEL (X-ray Free electron Lazar) institution is under construction aiming at the completion in 2014. Energy 10 GeV of the linac part of this institution and main frequency are planned in S-band (2856 MHz), and about 178 S-band 3m accelerating structures are due to be used for this linac. The oscillation of an X-ray laser requires very low emittance electron beam. On the other hand, since the accelerating structure which accelerates an electron beam has a feed port of microwave (iris), the electromagnetic field asymmetry of the microwave feeding device called coupler worsens the emittance of an electron beam. MHI manufactured two kinds of S-band accelerating structures with which the electromagnetic field asymmetry of coupler cavity was compensated for PALXFEL linac. We report these accelerating structures. (author)

  16. Photonic Crystal Laser-Driven Accelerator Structures

    Energy Technology Data Exchange (ETDEWEB)

    Cowan, Benjamin M.

    2007-08-22

    Laser-driven acceleration holds great promise for significantly improving accelerating gradient. However, scaling the conventional process of structure-based acceleration in vacuum down to optical wavelengths requires a substantially different kind of structure. We require an optical waveguide that (1) is constructed out of dielectric materials, (2) has transverse size on the order of a wavelength, and (3) supports a mode with speed-of-light phase velocity in vacuum. Photonic crystals---structures whose electromagnetic properties are spatially periodic---can meet these requirements. We discuss simulated photonic crystal accelerator structures and describe their properties. We begin with a class of two-dimensional structures which serves to illustrate the design considerations and trade-offs involved. We then present a three-dimensional structure, and describe its performance in terms of accelerating gradient and efficiency. We discuss particle beam dynamics in this structure, demonstrating a method for keeping a beam confined to the waveguide. We also discuss material and fabrication considerations. Since accelerating gradient is limited by optical damage to the structure, the damage threshold of the dielectric is a critical parameter. We experimentally measure the damage threshold of silicon for picosecond pulses in the infrared, and determine that our structure is capable of sustaining an accelerating gradient of 300 MV/m at 1550 nm. Finally, we discuss possibilities for manufacturing these structures using common microfabrication techniques.

  17. Laser Zone Annealing - Accelerated Route to Self-Assembled Nanostructures

    Science.gov (United States)

    Majewski, Pawel; Yager, Kevin; Rahman, Atikur; Black, Charles

    We present Laser Zone Annealing - a novel technique of accelerated self-assembly of block copolymer thin films utilizing laser light. In our approach, the laser beam, focused to a narrow line, is rastered across the polymer film coated on the light-absorbing substrate, inducing rapid and highly localized temperature transients in the film. By coupling our method with soft-shear, we demonstrate monolithic alignment of various cylinder-forming block copolymers over extremely short timescales. We utilize the aligned block copolymer films as templates for inorganic nanomaterials pattering. After delivery of inorganic precursors via aqueous or gaseous route, the polymer matrix is ashed leading to extremely well-ordered arrays of inorganic, metallic or semiconducting nanowires. Subsequently, we demonstrate how more complex nanostructures can be created with LZA including multilayered nanomeshes with symmetries beyond the conventional motifs accessible by native block copolymers. We investigate a perspective use of the inorganic arrays as transparent conductors or chemical sensors and characterize their anisotropic electro-optical properties. Research carried out in part at the Center for Functional Nanomaterials, Brookhaven National Laboratory, which is supported by the U.S. Department of Energy, Office of Basic Energy Sciences, under Contract No. DE-AC02-98CH10886.

  18. Nozzle and shroud assembly mounting structure

    Science.gov (United States)

    Faulder, Leslie J.; Frey, deceased, Gary A.; Nielsen, Engward W.; Ridler, Kenneth J.

    1997-01-01

    The present nozzle and shroud assembly mounting structure configuration increases component life and reduces maintenance by reducing internal stress between the mounting structure having a preestablished rate of thermal expansion and the nozzle and shroud assembly having a preestablished rate of thermal expansion being less than that of the mounting structure. The mounting structure includes an outer sealing portion forming a cradling member in which an annular ring member is slidably positioned. The mounting structure further includes an inner mounting portion to which a hooked end of the nozzle and shroud assembly is attached. As the inner mounting portion expands and contracts, the nozzle and shroud assembly slidably moves within the outer sealing portion.

  19. Variable energy constant current accelerator structure

    Science.gov (United States)

    Anderson, O.A.

    1988-07-13

    A variable energy, constant current ion beam accelerator structure is disclosed comprising an ion source capable of providing the desired ions, a pre-accelerator for establishing an initial energy level, a matching/pumping module having means for focusing means for maintaining the beam current, and at least one main accelerator module for continuing beam focus, with means capable of variably imparting acceleration to the beam so that a constant beam output current is maintained independent of the variable output energy. In a preferred embodiment, quadrupole electrodes are provided in both the matching/pumping module and the one or more accelerator modules, and are formed using four opposing cylinder electrodes which extend parallel to the beam axis and are spaced around the beam at 90/degree/ intervals with opposing electrodes maintained at the same potential. 12 figs., 3 tabs.

  20. ALECS: assembly language extensions and control structures

    International Nuclear Information System (INIS)

    ALECS is an assembly language preprocessor allowing the use of structured programming techniques in MACRO-11 code. Programs are written using standard control structures with normal MACRO-11 code embedded as needed. The ALECS task is used to translate the source to pure MACRO-11 source file which is then submitted to the assembler. ALECS also produces a structured source listing showing the true logical flow of code. ALECS has been used for short subroutines as well as RSX-11M I/0 drivers and an ACP

  1. New structure for accelerating heavy ions

    International Nuclear Information System (INIS)

    A new type of accelerating structure is described which is particular suited to heavy ions (high wavelength, high shunt impedance, small size). Its properties are analyzed and compared to those of other structures (more particularly the lines). It is shown that a mode of operation exists of which the shunt impedance in the station mode has 80 per cent of its value for the progressive mode. Finally results are given obtained with a small experimental apparatus which uses this structure. (author)

  2. Accelerating structures pre-stripping section the milac heavy ion linear Accelerator MILAC

    International Nuclear Information System (INIS)

    Researches on development of new variants of accelerating structures for acceleration of the ions with A/q=20 in pre-stripping section PSS-20 are carried out. On an initial part of acceleration of ions from 6 up to 150 keV/u high capture in process of acceleration of the injected ions is provided interdigital (IH) accelerating structure with Radio-Frequency Quadrupole (RFQ) focusing. On the second part of acceleration of ions from 150 keV/u up to 1 MeV/u the highest rate of acceleration is created interdigital (IH) accelerating structure with drift tubes with the modified radio-frequency focusing.

  3. Photonic crystal laser-driven accelerator structures

    CERN Document Server

    Cowan, Benjamin

    2005-01-01

    We discuss simulated photonic crystal structure designs, including two- and three-dimensional planar structures and fibers. The discussion of 2D structures demonstrates guiding of a speed-of-light accelerating mode by a defect in a photonic crystal lattice and reveals design considerations and trade-offs. With a three-dimensional lattice, we introduce a candidate geometry and discuss beam dynamics, coupling, and manufacturing techniques for that structure. In addition we discuss W-band scale tests of photonic crystal structures. The computational methods are also discussed.

  4. Automatic Tool for Local Assembly Structures

    Energy Technology Data Exchange (ETDEWEB)

    2016-10-11

    Whole community shotgun sequencing of total DNA (i.e. metagenomics) and total RNA (i.e. metatranscriptomics) has provided a wealth of information in the microbial community structure, predicted functions, metabolic networks, and is even able to reconstruct complete genomes directly. Here we present ATLAS (Automatic Tool for Local Assembly Structures) a comprehensive pipeline for assembly, annotation, genomic binning of metagenomic and metatranscriptomic data with an integrated framework for Multi-Omics. This will provide an open source tool for the Multi-Omic community at large.

  5. Arterivirus structural proteins and assembly

    Science.gov (United States)

    This chapter reviews the structural characteristics of the Arteriviridae, including the basic molecular details of all of the proteins involved, the interactions of these proteins and where they occur, and further functional characterization. Most recent available literature has been focused on equi...

  6. High-Gradient, Millimeter Wave Accelerating Structure

    CERN Document Server

    Kuzikov, S V; Peskov, N Yu

    2015-01-01

    The millimeter wave all-metallic accelerating structure, aimed to provide more than 100 MeV/m gradient and fed by feeding RF pulses of 20-30 ns duration, is proposed. The structure is based on a waveguide with small helical corrugation. Each section of 10-20 wavelengths long has big circular cross-section aperture comparable with wavelength. Because short wavelength structures are expected to be critical to wakefields excitation and emittance growth, we suggest to combine in one structure properties of a linear accelerator and a cooling damping ring simultaneously. It provides acceleration of straight on-axis beam as well as cooling of this beam due to the synchrotron radiation of particles in strong non-synchronous transverse fields. These properties are provided by specific slow eigen mode which consists of two partial waves, TM01 and TM11. Simulations show that shunt impedance can be as high as 100 MOhm/m. Results of the first low-power tests with 30 GHz accelerating section are analyzed.

  7. An Rf Focused Interdigital Ion Accelerating Structure

    International Nuclear Information System (INIS)

    An Rf Focused Interdigital (RFI) ion accelerating structure will be described. It represents an effective combination of the Wideroee (or interdigital) linac structure, used for many low frequency, heavy ion applications, and the rf electric quadrupole focusing used in the RFQ and RFD linac structures. As in the RFD linac structure, rf focusing is introduced into the RFI linac structure by configuring the drift tubes as two independent pieces operating at different electrical potentials as determined by the rf fields of the linac structure. Each piece (or electrode) of the RFI drift tube supports two fingers pointed inwards towards the opposite end of the drift tube forming a four-finger geometry that produces an rf quadrupole field along the axis of the linac for focusing the beam. However, because of the differences in the rf field configuration along the axis, the scheme for introducing rf focusing into the interdigital linac structure is quite different from that adopted for the RFD linac structure. The RFI linac structure promises to have significant size, efficiency, performance, and cost advantages over existing linac structures for the acceleration of low energy ion beams of all masses (light to heavy). These advantages will be reviewed. A 'cold model' of this new linac structure has been fabricated and the results of rf cavity measurements on this cold model will be presented

  8. Rectangular Diamond-Lined Accelerator Structure

    CERN Document Server

    Wang, Changbiao; Yakovlev, Vyacheslav P

    2005-01-01

    For high frequency accelerators with normal-conducting structures studied by the NLC/GLC collaboration and the CLIC group, rf breakdown is the main gradient limitation. In this paper, a Ka-band rectangular dielectric-lined structure is described as an attempt to increase accelerating gradient beyond the limits suitable for metallic structures. The structure is based on amorphous dielectrics that are known to exhibit high breakdown limits (~ GV/m). An example is artificial diamond that has already been successfully used on an industrial basis for large-diameter output windows of high power gyrotrons, and is produced industrially in increasing quantities. Artificial diamond has low loss tangent, moderate dielectric constant and high breakdown limit of ~2 GV/m. In the proposed structure diamond-slabs are employed to support high-gradient acceleration fields. Interposition of vacuum gaps between the dielectric slabs and the side walls is shown to reduce Ohmic losses substantially, leading to an increase in shunt ...

  9. Templated Self Assemble of Nano-Structures

    Energy Technology Data Exchange (ETDEWEB)

    Suo, Zhigang [Harvard University

    2013-04-29

    This project will identify and model mechanisms that template the self-assembly of nanostructures. We focus on a class of systems involving a two-phase monolayer of molecules adsorbed on a solid surface. At a suitably elevated temperature, the molecules diffuse on the surface to reduce the combined free energy of mixing, phase boundary, elastic field, and electrostatic field. With no template, the phases may form a pattern of stripes or disks. The feature size is on the order of 1-100 nm, selected to compromise the phase boundary energy and the long-range elastic or electrostatic interaction. Both experimental observations and our theoretical simulations have shown that the pattern resembles a periodic lattice, but has abundant imperfections. To form a perfect periodic pattern, or a designed aperiodic pattern, one must introduce a template to guide the assembly. For example, a coarse-scale pattern, lithographically defined on the substrate, will guide the assembly of the nanoscale pattern. As another example, if the molecules on the substrate surface carry strong electric dipoles, a charged object, placed in the space above the monolayer, will guide the assembly of the molecular dipoles. In particular, the charged object can be a mask with a designed nanoscale topographic pattern. A serial process (e.g., e-beam lithography) is necessary to make the mask, but the pattern transfer to the molecules on the substrate is a parallel process. The technique is potentially a high throughput, low cost process to pattern a monolayer. The monolayer pattern itself may serve as a template to fabricate a functional structure. This project will model fundamental aspects of these processes, including thermodynamics and kinetics of self-assembly, templated self-assembly, and self-assembly on unconventional substrates. It is envisioned that the theory will not only explain the available experimental observations, but also motivate new experiments.

  10. Transport synthetic acceleration for long-characteristics assembly-level transport problems

    Energy Technology Data Exchange (ETDEWEB)

    Zika, M.R.; Adams, M.L.

    2000-02-01

    The authors apply the transport synthetic acceleration (TSA) scheme to the long-characteristics spatial discretization for the two-dimensional assembly-level transport problem. This synthetic method employs a simplified transport operator as its low-order approximation. Thus, in the acceleration step, the authors take advantage of features of the long-characteristics discretization that make it particularly well suited to assembly-level transport problems. The main contribution is to address difficulties unique to the long-characteristics discretization and produce a computationally efficient acceleration scheme. The combination of the long-characteristics discretization, opposing reflecting boundary conditions (which are present in assembly-level transport problems), and TSA presents several challenges. The authors devise methods for overcoming each of them in a computationally efficient way. Since the boundary angular data exist on different grids in the high- and low-order problems, they define restriction and prolongation operations specific to the method of long characteristics to map between the two grids. They implement the conjugate gradient (CG) method in the presence of opposing reflection boundary conditions to solve the TSA low-order equations. The CG iteration may be applied only to symmetric positive definite (SPD) matrices; they prove that the long-characteristics discretization yields an SPD matrix. They present results of the acceleration scheme on a simple test problem, a typical pressurized water reactor assembly, and a typical boiling water reactor assembly.

  11. Transport synthetic acceleration for long-characteristics assembly-level transport problems

    International Nuclear Information System (INIS)

    The authors apply the transport synthetic acceleration (TSA) scheme to the long-characteristics spatial discretization for the two-dimensional assembly-level transport problem. This synthetic method employs a simplified transport operator as its low-order approximation. Thus, in the acceleration step, the authors take advantage of features of the long-characteristics discretization that make it particularly well suited to assembly-level transport problems. The main contribution is to address difficulties unique to the long-characteristics discretization and produce a computationally efficient acceleration scheme. The combination of the long-characteristics discretization, opposing reflecting boundary conditions (which are present in assembly-level transport problems), and TSA presents several challenges. The authors devise methods for overcoming each of them in a computationally efficient way. Since the boundary angular data exist on different grids in the high- and low-order problems, they define restriction and prolongation operations specific to the method of long characteristics to map between the two grids. They implement the conjugate gradient (CG) method in the presence of opposing reflection boundary conditions to solve the TSA low-order equations. The CG iteration may be applied only to symmetric positive definite (SPD) matrices; they prove that the long-characteristics discretization yields an SPD matrix. They present results of the acceleration scheme on a simple test problem, a typical pressurized water reactor assembly, and a typical boiling water reactor assembly

  12. Transport Synthetic Acceleration for Long-Characteristics Assembly-Level Transport Problems

    International Nuclear Information System (INIS)

    We apply the transport synthetic acceleration (TSA) scheme to the long-characteristics spatial discretization for the two-dimensional assembly-level transport problem. This synthetic method employs a simplified transport operator as its low-order approximation. Thus, in the acceleration step, we take advantage of features of the long-characteristics discretization that make it particularly well suited to assembly-level transport problems. Our main contribution is to address difficulties unique to the long-characteristics discretization and produce a computationally efficient acceleration scheme.The combination of the long-characteristics discretization, opposing reflecting boundary conditions (which are present in assembly-level transport problems), and TSA presents several challenges. We devise methods for overcoming each of them in a computationally efficient way. Since the boundary angular data exist on different grids in the high- and low-order problems, we define restriction and prolongation operations specific to the method of long characteristics to map between the two grids. We implement the conjugate gradient (CG) method in the presence of opposing reflection boundary conditions to solve the TSA low-order equations. The CG iteration may be applied only to symmetric positive definite (SPD) matrices; we prove that the long-characteristics discretization yields an SPD matrix. We present results of our acceleration scheme on a simple test problem, a typical pressurized water reactor assembly, and a typical boiling water reactor assembly

  13. Validation of the transient Structural Response of a Threaded Assembly

    Energy Technology Data Exchange (ETDEWEB)

    Doebling, S. W. (Scott W.); Hemez, F. M. (François M.); Schultze, J. F. (John F.)

    2002-01-01

    This paper will demonstrate the application of model validation techniques to a transient structural dynamics problem. The problem of interest is the propagation of an explosive shock through a complex threaded joint that is a surrogate model of a system assembly. The objective is to validate the computational modeling of the key mechanical phenomena in the assembly, so that the component can be represented with adequate fidelity in the system-level model. A set of experiments was conducted on the threaded assembly where the acceleration and strain responses to an explosive load were measured on mass-simulators representing payloads. A significantly detailed computational model of the threaded assembly was also created. Numerical features that represent the important characteristics of the response were defined and calculated for both the experimental and computational data. Each step of the model validation process will be described as applied to this problem. Fundamental issues regarding the nature of model validation and the role of model validation in the engineering analysis process will also be discussed.

  14. Latest Insights on Adenovirus Structure and Assembly

    Directory of Open Access Journals (Sweden)

    Carmen San Martín

    2012-05-01

    Full Text Available Adenovirus (AdV capsid organization is considerably complex, not only because of its large size (~950 Å and triangulation number (pseudo T = 25, but also because it contains four types of minor proteins in specialized locations modulating the quasi-equivalent icosahedral interactions. Up until 2009, only its major components (hexon, penton, and fiber had separately been described in atomic detail. Their relationships within the virion, and the location of minor coat proteins, were inferred from combining the known crystal structures with increasingly more detailed cryo-electron microscopy (cryoEM maps. There was no structural information on assembly intermediates. Later on that year, two reports described the structural differences between the mature and immature adenoviral particle, starting to shed light on the different stages of viral assembly, and giving further insights into the roles of core and minor coat proteins during morphogenesis [1,2]. Finally, in 2010, two papers describing the atomic resolution structure of the complete virion appeared [3,4]. These reports represent a veritable tour de force for two structural biology techniques: X-ray crystallography and cryoEM, as this is the largest macromolecular complex solved at high resolution by either of them. In particular, the cryoEM analysis provided an unprecedented clear picture of the complex protein networks shaping the icosahedral shell. Here I review these latest developments in the field of AdV structural studies.

  15. Advanced accelerator and mm-wave structure research at LANL

    Energy Technology Data Exchange (ETDEWEB)

    Simakov, Evgenya Ivanovna [Los Alamos National Lab. (LANL), Los Alamos, NM (United States)

    2016-06-22

    This document outlines acceleration projects and mm-wave structure research performed at LANL. The motivation for PBG research is described first, with reference to couplers for superconducting accelerators and structures for room-temperature accelerators and W-band TWTs. These topics are then taken up in greater detail: PBG structures and the MIT PBG accelerator; SRF PBG cavities at LANL; X-band PBG cavities at LANL; and W-band PBG TWT at LANL. The presentation concludes by describing other advanced accelerator projects: beam shaping with an Emittance Exchanger, diamond field emitter array cathodes, and additive manufacturing of novel accelerator structures.

  16. Alignment Pins for Assembling and Disassembling Structures

    Science.gov (United States)

    Campbell, Oliver C.

    2008-01-01

    Simple, easy-to-use, highly effective tooling has been devised for maintaining alignment of bolt holes in mating structures during assembly and disassembly of the structures. The tooling was originally used during removal of a body flap from the space shuttle Atlantis, in which misalignments during removal of the last few bolts could cause the bolts to bind in their holes. By suitably modifying the dimensions of the tooling components, the basic design of the tooling can readily be adapted to other structures that must be maintained in alignment. The tooling includes tapered, internally threaded alignment pins designed to fit in the bolt holes in one of the mating structures, plus a draw bolt and a cup that are used to install or remove each alignment pin. In preparation for disassembly of two mating structures, external supports are provided to prevent unintended movement of the structures. During disassembly of the structures, as each bolt that joins the structures is removed, an alignment pin is installed in its place. Once all the bolts have been removed and replaced with pins, the pins maintain alignment as the structures are gently pushed or pulled apart on the supports. In assembling the two structures, one reverses the procedure described above: pins are installed in the bolt holes, the structures are pulled or pushed together on the supports, then the pins are removed and replaced with bolts. The figure depicts the tooling and its use. To install an alignment pin in a bolt hole in a structural panel, the tapered end of the pin is inserted from one side of the panel, the cup is placed over the pin on the opposite side of the panel, the draw bolt is inserted through the cup and threaded into the pin, the draw bolt is tightened to pull the pin until the pin is seated firmly in the hole, then the draw bolt and cup are removed, leaving the pin in place. To remove an alignment pin, the cup is placed over the pin on the first-mentioned side of the panel, the draw

  17. Rapid Electromagnetic Analysis of Entire Accelerator Structures

    CERN Document Server

    Cooke, Simon

    2005-01-01

    We present results of a new method for fast, accurate calculation, in 3-D, of the electromagnetic mode spectrum of long, tapered accelerator structures. Instead of discretizing the entire structure directly and solving a huge matrix eigenvalue problem, we use a new two-step technique that scales much better to long, multi-cavity structures. In the first step we compute a small number of eigenmodes of individual cavities, achieving 0.05% frequency accuracy using a new second-order finite-element code. In the second step we use these 3-D mode solutions as field basis functions to obtain a reduced matrix representation of Maxwell's equations for the complete structure. Solving the reduced system takes just a few minutes on a desktop PC even with more than 100 non-identical cavities, and gives the complete mode spectrum in the first few bands of the structure. By judicious choice of the basis modes, we retain 0.05% frequency accuracy for these global solutions, and can reconstruct the complete 3-D field of each m...

  18. THE MECHANICAL AND SHIELDING DESIGN OF A PORTABLE SPECTROMETER AND BEAM DUMP ASSEMBLY AT BNLS ACCELERATOR TEST FACILITY.

    Energy Technology Data Exchange (ETDEWEB)

    HU,J.P.; CASEY,W.R.; HARDER,D.A.; PJEROV,S.; RAKOWSKY,G.; SKARITKA,J.R.

    2002-09-05

    A portable assembly containing a vertical-bend dipole magnet has been designed and installed immediately down-beam of the Compton electron-laser interaction chamber on beamline 1 of the Accelerator Test Facility (ATF) at Brookhaven National Laboratory (BNL). The water-cooled magnet designed with field strength of up to 0.7 Tesla will be used as a spectrometer in the Thompson scattering and vacuum acceleration experiments, where field-dependent electron scattering, beam focusing and energy spread will be analyzed. This magnet will deflect the ATF's 60 MeV electron-beam 90{sup o} downward, as a vertical beam dump for the Compton scattering experiment. The dipole magnet assembly is portable, and can be relocated to other beamlines at the ATF or other accelerator facilities to be used as a spectrometer or a beam dump. The mechanical and shielding calculations are presented in this paper. The structural rigidity and stability of the assembly were studied. A square lead shield surrounding the assembly's Faraday Cup was designed to attenuate the radiation emerging from the 1 inch-copper beam stop. All photons produced were assumed to be sufficiently energetic to generate photoneutrons. A safety evaluation of groundwater tritium contamination due to the thermal neutron capturing by the deuterium in water was performed, using updated Monte Carlo neutron-photon coupled transport code (MCNP). High-energy neutron spallation, which is a potential source to directly generate radioactive tritium and sodium-22 in soil, was conservatively assessed in verifying personal and environmental safety.

  19. Assembly and installation of the 2 MeV FMIT accelerator

    International Nuclear Information System (INIS)

    The front end of the 35-MeV Fusion Materials Irradiation Test (FMIT) Facility accelerator is being assembled and installed at Los Alamos. The machine ultimately will produce a 500-kW continuous-duty beam at 5 MeV, although only the first 2 MeV will be installed this year. The 2-MeV system will include the most-powerful radio-frequency quadrupole (RFQ) in existence. The assembly and installation of the hardware are described, along with the unique problems arising from the large size and high power of the components involved

  20. Programmed assembly of nanoscale structures using peptoids.

    Energy Technology Data Exchange (ETDEWEB)

    Ren, Jianhua (University of the Pacific, Stockton, CA); Russell, Scott (California State University, Stanislaus, Turlock, CA); Morishetti, Kiran (University of the Pacific, Stockton, CA); Robinson, David B.; Zuckermann, Ronald N. (Lawrence Berkeley National Laboratory, Berkeley, CA); Buffleben, George M.; Hjelm, Rex P. (Los Alamos National Laboratory, Los Alamos, NM); Kent, Michael Stuart (Sandia National Laboratories, Albuquerque, NM)

    2011-02-01

    Sequence-specific polymers are the basis of the most promising approaches to bottom-up programmed assembly of nanoscale materials. Examples include artificial peptides and nucleic acids. Another class is oligo(N-functional glycine)s, also known as peptoids, which permit greater sidegroup diversity and conformational control, and can be easier to synthesize and purify. We have developed a set of peptoids that can be used to make inorganic nanoparticles more compatible with biological sequence-specific polymers so that they can be incorporated into nucleic acid or other biologically based nanostructures. Peptoids offer degrees of modularity, versatility, and predictability that equal or exceed other sequence-specific polymers, allowing for rational design of oligomers for a specific purpose. This degree of control will be essential to the development of arbitrarily designed nanoscale structures.

  1. Physics analyses of an accelerator-driven sub-critical assembly

    Energy Technology Data Exchange (ETDEWEB)

    Naberezhnev, Dmitry G. [Nuclear Engineering Division, Argonne National Laboratory, 9700 S. Cass Av., Argonne, IL 60439 (United States)]. E-mail: dimitri@anl.gov; Gohar, Yousry [Nuclear Engineering Division, Argonne National Laboratory, 9700 S. Cass Av., Argonne, IL 60439 (United States); Bailey, James [Nuclear Engineering Division, Argonne National Laboratory, 9700 S. Cass Av., Argonne, IL 60439 (United States); Belch, Henry [Nuclear Engineering Division, Argonne National Laboratory, 9700 S. Cass Av., Argonne, IL 60439 (United States)

    2006-06-23

    Physics analyses have been performed for an accelerator-driven sub-critical assembly as a part of the Argonne National Laboratory activity in preparation for a joint conceptual design with the Kharkov Institute of Physics and Technology (KIPT) of Ukraine. KIPT has a plan to construct an accelerator-driven sub-critical assembly targeted towards the medical isotope production and the support of the Ukraine nuclear industry. The external neutron source is produced either through photonuclear reactions in tungsten or uranium targets, or deuteron reactions in a beryllium target. KIPT intends using the high-enriched uranium (HEU) for the fuel of the sub-critical assembly. The main objective of this paper is to study the possibility of utilizing low-enriched uranium (LEU) fuel instead of HEU fuel without penalizing the sub-critical assembly performance, in particular the neutron flux level. In the course of this activity, several studies have been carried out to investigate the main choices for the system's parameters. The external neutron source has been characterized and a pre-conceptual target design has been developed. Several sub-critical configurations with different fuel enrichments and densities have been considered. Based on our analysis, it was shown that the performance of the LEU fuel is comparable with that of the HEU fuel. The LEU fuel sub-critical assembly with 200-MeV electron energy and 100-kW electron beam power has an average total flux of {approx}2.50x10{sup 13} n/s cm{sup 2} in the irradiation channels. The corresponding total facility power is {approx}204 kW divided into 91 and 113 kW deposited in the target and sub-critical assemblies, respectively.

  2. Studies on high-precision machining and assembly of CLIC RF structures

    CERN Document Server

    Huopana, J; Riddone, G; Österberg, K

    2010-01-01

    The Compact Linear Collider (CLIC) is currently under development at CERN as a potential multi-TeV e+e– collider. The manufacturing and assembly tolerances for the required RF components are essential for the final efficiency and for the operation of CLIC. The proper function of an accelerating structure is sensitive to mechanical errors in the shape and the alignment of the accelerating cavity. The current tolerances are in the micron range. This raises challenges in the field of mechanical design and demands special manufacturing technologies and processes. Currently the mechanical design of the accelerating structures is based on a disk design. Alternatively, it is possible to create the accelerating assembly from quadrants, which has the potential to be favoured for the mass production due to simplicity and cost. In this case, the functional shape inside of the accelerating structure remains the same and a single assembly uses less parts. This paper focuses on the development work done in design and sim...

  3. Brazing techniques for side-coupled electron accelerator structures

    International Nuclear Information System (INIS)

    The collaboration between the Los Alamos National Laboratory and the National Bureau of Standards (NBS), started in 1979, has led to the development of an advanced c-w microtron accelerator design. The four 2380-MHz NBS accelerating structures, containing a total of 184 accelerating cavities, have been fabricated and delivered. New fabrication methods, coupled with refinements of hydrogen-furnace brazing techniques described in this paper, allow efficient production of side-coupled structures. Success with the NBS RTM led to Los Alamos efforts on similar 2450-MHz accelerators for the microtron accelerator operated by the Nuclear Physics Department of the University of Illinois. Two accelerators (each with 17 cavities) have been fabricated; in 1986, a 45-cavity accelerator is being fabricated by private industry with some assistance from Los Alamos. Further private industry experience and refinement of the described fabrication techniques may allow future accelerators of this type to be completely fabricated by private industry

  4. The fabrication of millimeter-wavelength accelerating structures

    Energy Technology Data Exchange (ETDEWEB)

    Chou, P.J.; Bowden, G.B.; Copeland, M.R. [and others

    1996-11-01

    There is a growing interest in the development of high gradient ({ge} 1 GeV/m) accelerating structures. The need for high gradient acceleration based on current microwave technology requires the structures to be operated in the millimeter wavelength. Fabrication of accelerating structures at millimeter scale with sub-micron tolerances poses great challenges. The accelerating structures impose strict requirements on surface smoothness and finish to suppress field emission and multipactor effects. Various fabrication techniques based on conventional machining and micromachining have been evaluated and tested. These will be discussed and measurement results presented.

  5. The fabrication of millimeter-wavelength accelerating structures

    International Nuclear Information System (INIS)

    There is a growing interest in the development of high gradient (≥ 1 GeV/m) accelerating structures. The need for high gradient acceleration based on current microwave technology requires the structures to be operated in the millimeter wavelength. Fabrication of accelerating structures at millimeter scale with sub-micron tolerances poses great challenges. The accelerating structures impose strict requirements on surface smoothness and finish to suppress field emission and multipactor effects. Various fabrication techniques based on conventional machining and micromachining have been evaluated and tested. These will be discussed and measurement results presented

  6. Structural analyses and integrated design of the MITICA Injector assembly

    International Nuclear Information System (INIS)

    Highlights: ► Seismic design has been carried out on PRIMA building. ► Three-dimensional FE models have been developed the vessel and TL device. ► Three bellows stiffness have been considered to evaluate maximum TL displacements. -- Abstract: In the framework of the activities foreseen for PRIMA (Padova Research on Injector Megavolt Accelerated) the MITICA neutral beam injector plays the role of main experiment, aiming to build, operate, test and optimize a full power and full scale prototype of the ITER Heating Neutral Beam Injector [1–3]. The entire MITICA system will be housed in special buildings, suitably designed to provide all the necessary supports, interfaces and shielding walls for nuclear radiation safety. Therefore an integrated design of the MITICA system and relevant buildings shall be developed and verified carefully, considering all the different configurations, operational modes and load combinations. This paper presents the numerical models and the results of MITICA assembly integrated analyses. The model takes into account properly constraints to ground and surrounding buildings, to study and verify the static and seismic response of the whole assembly. The load cases are defined and the numerical analyses described. Load definition and analyses have been performed considering the requirements of both the ASME [4] and the National Standard NTC2008 [5] for the seismic verification of structures subject to design response spectra. The obtained results are finally shown in detail and discussed, also comparing some different design options for design optimization

  7. Structures Self-Assembled Through Directional Solidification

    Science.gov (United States)

    Dynys, Frederick W.; Sayir, Ali

    2005-01-01

    dry plasma etch. The wet chemical etches the silicon away, exposing the TiSi2 rods, whereas plasma etching preferentially etches the Si-TiSi2 interface to form a crater. The porous architectures are applicable to fabricating microdevices or creating templates for part fabrication. The porous rod structure can serve as a platform for fabricating microplasma devices for propulsion or microheat exchangers and for fabricating microfilters for miniatured chemical reactors. Although more work is required, self-assembly from DSE can have a role in microdevice fabrication.

  8. Required performance to the concrete structure of the accelerator facilities

    International Nuclear Information System (INIS)

    As for the accelerator facility, there is many a thing which is constructed as underground concrete structure from viewpoint such as cover of radiation and stability of the structure. Required performance to the concrete structure of the accelerator facility is the same as the general social infrastructure, but it has been possessed the feature where target performance differs largely. As for the body sentence, expressing the difference of the performance which is required from the concrete structure of the social infrastructure and the accelerator facility, construction management of the concrete structure which it plans from order of the accelerator engineering works facility, reaches to the design, supervision and operation it is something which expresses the method of thinking. In addition, in the future of material structural analysis of the concrete which uses the neutron accelerator concerning view it showed. (author)

  9. Molecular Component Structures Mediated Formation of Self-assemblies

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    Molecular recognition directed self-assemblies from complementary molecular components, melamine and barbituric acid derivatives were studied by means of NMR, fluorescence, and TEM. It was found that both the process of the self-assembly and the morphologies of the result ed self-assemblies could be mediated by modifying the structures of the molecular components used. The effect of the structures of the molecular components on the formation of the self-as semblies was discussed in terms of intermolecular interactions.

  10. Coupler tuning for constant gradient travelling wave accelerating structures

    International Nuclear Information System (INIS)

    The method of the coupler tuning for the constant gradient traveling wave accelerating structure was described and the formula of coupling coefficient p was deduced on the basis of analyzing the existing methods for the constant impedance traveling wave accelerating structures and coupling-cavity chain equivalent circuits. The method and formula were validated by the simulation result by CST and experiment data. (authors)

  11. Travelling wave accelerating structure design for TESLA positron injector linac

    CERN Document Server

    Jin, K; Zhou, F; Flöttmann, K

    2000-01-01

    A modified cup-like TW accelerating structure for TESLA Positron Pre-Accelerator (PPA) is designed by optimizing the structure geometry and by changing the iris thickness cell by cell in a section . This structure has high shunt-impedance and a large iris radius to meet with the requirements of high gradient and large transverse acceptance. The beam dynamics in the structure with the optimum solenoid focus field are studied. A satisfactory positron beam transmission and the beam performance at the PPA output have been obtained. In this paper the accelerating structure design is described in detail and the results are presented.

  12. Compact Couplers for Photonic Crystal Laser-Driven Accelerator Structures

    International Nuclear Information System (INIS)

    Photonic crystal waveguides are promising candidates for laser-driven accelerator structures because of their ability to confine a speed-of-light mode in an all-dielectric structure. Because of the difference between the group velocity of the waveguide mode and the particle bunch velocity, fields must be coupled into the accelerating waveguide at frequent intervals. Therefore efficient, compact couplers are critical to overall accelerator efficiency. We present designs and simulations of high-efficiency coupling to the accelerating mode in a three-dimensional photonic crystal waveguide from a waveguide adjoining it at 90o. We discuss details of the computation and the resulting transmission. We include some background on the accelerator structure and photonic crystal-based optical acceleration in general.

  13. Manifold damping of the NLC detuned accelerating structure

    International Nuclear Information System (INIS)

    In order to investigate the reappearance of the HOM wakefield of a detuned accelerator structure and relax tolerance requirements, we propose to provide low level damping by coupling all cavities to several identical and symmetrically located waveguides (manifolds) which run parallel to each accelerator structure and are terminated at each end by matched loads. The waveguides are designed such that all modes which couple to the acceleration mode are non-propagating at the acceleration mode frequency. Hence the coupling irises can be designed to provide large coupling to higher frequency modes without damping the acceleration mode. Because the higher order modes are detuned, they are localized and have a broad spectrum of phase velocities of both signs. They are therefore capable of coupling effectively to all propagating modes in the waveguides. Methods of analyzing and results obtained for the very complex system of modes in the accelerating structure and manifolds are presented

  14. Final report on "Multipactor Physics, Acceleration, and Breakdown in Dielectric-Loaded Accelerating Structures"

    Energy Technology Data Exchange (ETDEWEB)

    Fischer, Richard P. [Naval Research Lab., Washington, DC (United States); Gold, Steven H. [Naval Research Lab., Washington, DC (United States)

    2016-07-01

    This is the final report of a three-year program (2013-2016) to evaluate the physics issues associated with rf acceleration in dielectric-loaded accelerating (DLA) structures, with a focus on the key issue of multipactor loading, which has been found to cause very significant rf power loss in DLA structures whenever the rf pulsewidth exceeds the multipactor risetime (~10 ns). The experiments are carried out in the X-band magnicon laboratory at the Naval Research Laboratory (NRL) in collaboration with Argonne National Laboratory (ANL) and Euclid Techlabs LLC, who develop the test structures with support from the DoE SBIR program. There are two main elements in the research program: (1) high-power tests of DLA structures using the magnicon output (20 MW @11.4 GHz), and (2) tests of electron acceleration in DLA structures using relativistic electrons from a compact X-band accelerator. The work during this period has focused on a study of the use of an axial magnetic field to suppress multipactor in DLA structures, with several new high power tests carried out at NRL, and on preparation of the accelerator for the electron acceleration experiments. A new experiment was recently conducted with improved conditions, including a solenoidal magnetic field (up to 1.1 T), a shorter standing wave DLA to ensure uniformity, and a built-in rf probe to monitor the accelerating gradient inside the cavity during high-power testing. Excellent agreement has been obtained between the modeled and measured accelerating gradient signals inside the standing-wave DLA structure, which represents a quantitatively better understanding of multipactor. More importantly, this is the first demonstration of multipactor being fully suppressed in a rf-driven DLA structure. This eliminates one of the most important hurdles towards practical dielectric-based rf linear accelerators, and may lead to wide use of dielectric materials in high-field vacuum electronics.

  15. The determinism and boundedness of self-assembling structures

    CERN Document Server

    Tesoro, S

    2016-01-01

    Self-assembly processes are widespread in nature, and lie at the heart of many biological and physical phenomena. The characteristics of self-assembly building blocks determine the structures that they form. Among the most important of these properties are whether the self-assembly is deterministic or nondeterministic, and whether it is bound or unbound. The former tells us whether the same set of building blocks always generates the same structure, and the latter whether it grows indefinitely. These properties are highly relevant in the context of protein structures, as the difference between deterministic protein self-assembly and nondeterministic protein aggregation is central to a number of diseases. Here we introduce a graph-based approach that can determine, with a few restrictions, whether a set of self-assembly building blocks is deterministic or nondeterministic, and whether it is bound or unbound. We apply this methodology to a previously studied lattice self-assembly model and discuss generalisatio...

  16. High frequency single mode traveling wave structure for particle acceleration

    Science.gov (United States)

    Ivanyan, M. I.; Danielyan, V. A.; Grigoryan, B. A.; Grigoryan, A. H.; Tsakanian, A. V.; Tsakanov, V. M.; Vardanyan, A. S.; Zakaryan, S. V.

    2016-09-01

    The development of the new high frequency slow traveling wave structures is one of the promising directions in accomplishment of charged particles high acceleration gradient. The disc and dielectric loaded structures are the most known structures with slowly propagating modes. In this paper a large aperture high frequency metallic two-layer accelerating structure is studied. The electrodynamical properties of the slowly propagating TM01 mode in a metallic tube with internally coated low conductive thin layer are examined.

  17. Simulation studies of crystal-photodetector assemblies for the Turkish accelerator center particle factory electromagnetic calorimeter

    Energy Technology Data Exchange (ETDEWEB)

    Kocak, F., E-mail: fkocak@uludag.edu.tr

    2015-07-01

    The Turkish Accelerator Center Particle Factory detector will be constructed for the detection of the produced particles from the collision of a 1 GeV electron beam against a 3.6 GeV positron beam. PbWO{sub 4} and CsI(Tl) crystals are considered for the construction of the electromagnetic calorimeter part of the detector. The generated optical photons in these crystals are detected by avalanche or PIN photodiodes. Geant4 simulation code has been used to estimate the energy resolution of the calorimeter for these crystal–photodiode assemblies.

  18. Multipactor Physics, Acceleration, and Breakdown in Dielectric-Loaded Accelerating Structures

    Energy Technology Data Exchange (ETDEWEB)

    Fischer, Richard P. [Naval Research Lab., Washington, DC (United States); Gold, Steven H. [Naval Research Lab., Washington, DC (United States)

    2016-07-01

    The objective of this 3-year program is to study the physics issues associated with rf acceleration in dielectric-loaded accelerating (DLA) structures, with a focus on the key issue of multipactor loading, which has been found to cause very significant rf power loss in DLA structures whenever the rf pulsewidth exceeds the multipactor risetime (~10 ns). The experiments are carried out in the X-band magnicon laboratory at the Naval Research Laboratory (NRL) in collaboration with Argonne National Laboratory (ANL) and Euclid Techlabs LLC, who develop the test structures with support from the DoE SBIR program. There are two main elements in the research program: (1) high-power tests of DLA structures using the magnicon output (20 MW @11.4 GHz), and (2) tests of electron acceleration in DLA structures using relativistic electrons from a compact X-band accelerator. The work during this period has focused on a study of the use of an axial magnetic field to suppress multipactor in DLA structures, with several new high power tests carried out at NRL, and on preparation of the accelerator for the electron acceleration experiments.

  19. Some aspects in accelerator structure studies at SLAC

    Institute of Scientific and Technical Information of China (English)

    WANG Ju-Wen

    2009-01-01

    Recent progress in the accelerator structure studies at SLAC is reported.This paper covers the projects including RF deflectors and the LCLS RF gun;the high gradient accelerator R&D in a global CLIC collaboration for the future multi-TeV linear colliders.

  20. Investigation of IFMIF target assembly structure design

    International Nuclear Information System (INIS)

    In the International Fusion Materials Irradiation Facility (IFMIF), the back-wall of target assembly is the part suffered the highest neutron-flux. The back-wall and the assembly are designed to have lips for cutting/welding at the back-wall replacement. To reduce thermal stress and deformation of the back-wall under neutron irradiation, contact pressure between the back-wall and the assembly is one of dominant factors. Therefore, an investigation was performed for feasible clamping pressure of a mechanical clamp set in limited space around the back-wall. It was clarified that the clamp can give a pressure difference up to 0.4 MPa between the contact pressure and atmosphere pressure in the test cell room. Also a research was performed for the dissimilar metal welding in the back-wall. Use of 309 steel was found adequate as the intermediate filler metal through the research of previous welding. Maintaining a temperature of the target assembly so as to avoid a freezing of liquid lithium is needed at the lithium charge into the loop before the beam injection. The assembly is covered with thermal insulation. Therefore, a research and an investigation were performed for compact and light thermal-insulation effective even under helium (i.e. high heat-conduction) condition of the test cell room. The result was as follows; in the case that a thermal conductivity 0.008 W/m·K of one of found insulation materials is available in the temperature range up to 300degC of the IFMIF target assembly, needed thickness and weight of the insulation were respectively only 8.2 mm and 32 kg. Also a research was performed for high-heat-density heaters to maintain temperature of the back-wall which can not be cover with insulation due to limited space. A heater made of silicon-nitride was found to be adequate. Total heat of 8.4 kW on the back-wall was found to be achievable through an investigations of heater arrange. Also an investigation was performed for remote-handling device to

  1. Welding device for nuclear fuel assembly structure elements

    International Nuclear Information System (INIS)

    The device has two parallel assembling positions next to each other. The welding robot is carried by a carriage with displacement parallel to the guide tubes and has enough degrees of freedom to move from one assembling position to the other and have access to the structural elements

  2. Structural design of neptunium-bearing assembly for transmutation research

    International Nuclear Information System (INIS)

    To study the irradiation performance of the long-life nuclide and to lay a foundation for the 'separation-transmutation' advanced fuel cycle technology, an experimental neptunium-bearing assembly is designed on the basis of the standard fuel assembly of CEFR. In this paper, design principles and structure of the experimental neptunium-bearing assembly are explained in detail. The design analysis and validation are briefly introduced. The design of the experimental assembly can meet the demand of irradiation test. Up to now, the out-of-pile hydraulic test is under way and the manufacture of the assembly is nearly completed. It is to be irradiated in the first row of stainless steel reflector assemblies for about 240 effective full power days. (authors)

  3. New linear accelerator (Linac) design based on C-band accelerating structures for SXFEL facility

    Institute of Scientific and Technical Information of China (English)

    ZHANG Meng; GU Qiang

    2011-01-01

    A C-band accelerator structure is one promising technique for a compact XFEL facility.It is also attractive in beam dynamics in maintaining a high quality electron beam,which is an important factor in the performance of a free electron laser.In this paper,a comparison between traditional S-band and C-band accelerating structures is made based on the linac configuration of a Shanghai Soft X-ray Free Electron Laser (SXFEL) facility.Throughout the comprehensive simulation,we conclude that the C-band structure is much more competitive.

  4. Multipacting simulation in accelerating RF structures

    Energy Technology Data Exchange (ETDEWEB)

    Gusarova, M.A.; Kaminsky, V.I. [Moscow Engineering Physics Institute, State University (Russian Federation); Kravchuk, L.V. [Institute for Nuclear Research of Russian Academy of Sciences (Russian Federation); Kutsaev, S.V. [Moscow Engineering Physics Institute, State University (Russian Federation)], E-mail: s_kutsaev@mail.ru; Lalayan, M.V.; Sobenin, N.P. [Moscow Engineering Physics Institute, State University (Russian Federation); Tarasov, S.G. [Institute for Nuclear Research of Russian Academy of Sciences (Russian Federation)

    2009-02-01

    A new computer code for 3D simulation of multipacting phenomenon in axisymmetric and non-axisymmetric radio frequency (RF) structures is presented. The goal of the simulation is to determine resonant electron trajectories and electron multiplication in RF structure. Both SW and TW structures of normal and superconductivity have been studied. Simulation results are compared with theoretical calculations and experimental measurements.

  5. Atomic structures of peptide self-assembly mimics

    OpenAIRE

    Makabe, Koki; McElheny, Dan; Tereshko, Valentia; Hilyard, Aaron; Gawlak, Grzegorz; Yan, Shude; Koide, Akiko; Koide, Shohei

    2006-01-01

    Although the β-rich self-assemblies are a major structural class for polypeptides and the focus of intense research, little is known about their atomic structures and dynamics due to their insoluble and noncrystalline nature. We developed a protein engineering strategy that captures a self-assembly segment in a water-soluble molecule. A predefined number of self-assembling peptide units are linked, and the β-sheet ends are capped to prevent aggregation, which yields a mono-dispersed soluble p...

  6. Fabrication and Characterization of Woodpile Structures for Direct Laser Acceleration

    Energy Technology Data Exchange (ETDEWEB)

    McGuinness, C.; Colby, E.; England, R.J.; Ng, J.; Noble, R.J.; /SLAC; Peralta, E.; Soong, K.; /Stanford U., Ginzton Lab.; Spencer, J.; Walz, D.; /SLAC; Byer, R.L.; /Stanford U., Ginzton Lab.

    2010-08-26

    An eight and nine layer three dimensional photonic crystal with a defect designed specifically for accelerator applications has been fabricated. The structures were fabricated using a combination of nanofabrication techniques, including low pressure chemical vapor deposition, optical lithography, and chemical mechanical polishing. Limits imposed by the optical lithography set the minimum feature size to 400 nm, corresponding to a structure with a bandgap centered at 4.26 {micro}m. Reflection spectroscopy reveal a peak in reflectivity about the predicted region, and good agreement with simulation is shown. The eight and nine layer structures will be aligned and bonded together to form the complete seventeen layer woodpile accelerator structure.

  7. A telerobotic system for automated assembly of large space structures

    Science.gov (United States)

    Rhodes, Marvin D.; Will, Ralph W.; Wise, Marion A.

    1990-01-01

    Future space missions such as polar platforms and antennas are anticipated to require large truss structures as their primary support system. During the past several years considerable research has been conducted to develop hardware and construction techniques suitable for astronaut assembly of truss structures in space. A research program has recently been initiated to develop the technology and to demonstrate the potential for automated in-space assembly of large erectable structures. The initial effort will be focused on automated assembly of a tetrahedral truss composed of 2-meter members. The facility is designed as a ground based system to permit evaluation of assembly concepts and was not designed for space qualification. The system is intended to be used as a tool from which more sophisticated procedures and operations can be developed. The facility description includes a truss structure, motionbases and a robot arm equipped with an end effector. Other considerations and requirements of the structural assembly describe computer control systems to monitor and control the operations of the assembly facility.

  8. Design and construction of the clean room for proton beam accelerator assembly

    International Nuclear Information System (INIS)

    The objective of this report is to design, construction and evaluation of clean room for proton beam accelerator assembly. The design conditions o Class : 1,000(1,000 ea ft3), o Flow Rate : 200 m3/h m2, o Temperature : 22 deg C±2, o Humidity : 55%±5. The main design results are summarized as follows: o Air-handling unit : Cooling Capacity : 13,500 kcal/h, Heating Capacity : 10,300 kcal/h, Humidity Capacity : 4 kg/h, Flow Rate : 150 CMM o Air Shower : Flow Rate : 35 CMM, Size : 1500 x 1000 x 2200, Material : In-steel, Out-SUS304, Filter : PRE + HEPA, AIR Velocity : 25 m/s o Relief Damper : Size : Φ250, Casing : SS41, Blade : AL, Shaft : SUS304, Weight Ring : SS41, Grill : AL o HEPA Filter Box : Filter Box Size : 670 x 670 x 630, Filter Size : 610 x 610 x 150, Frame: Poly Wood, Media : Glass Fiber, Filter Efficiency : 0.3μm, 99.97%, Separator : AL, Flow Rate : 17 CMM, Damper Size : Φ300 Following this report will be used important data for the design, construction, operation and maintenance of the clean room, for high precision apparatus assembly laboratory

  9. Accelerated probabilistic inference of RNA structure evolution

    Directory of Open Access Journals (Sweden)

    Holmes Ian

    2005-03-01

    Full Text Available Abstract Background Pairwise stochastic context-free grammars (Pair SCFGs are powerful tools for evolutionary analysis of RNA, including simultaneous RNA sequence alignment and secondary structure prediction, but the associated algorithms are intensive in both CPU and memory usage. The same problem is faced by other RNA alignment-and-folding algorithms based on Sankoff's 1985 algorithm. It is therefore desirable to constrain such algorithms, by pre-processing the sequences and using this first pass to limit the range of structures and/or alignments that can be considered. Results We demonstrate how flexible classes of constraint can be imposed, greatly reducing the computational costs while maintaining a high quality of structural homology prediction. Any score-attributed context-free grammar (e.g. energy-based scoring schemes, or conditionally normalized Pair SCFGs is amenable to this treatment. It is now possible to combine independent structural and alignment constraints of unprecedented general flexibility in Pair SCFG alignment algorithms. We outline several applications to the bioinformatics of RNA sequence and structure, including Waterman-Eggert N-best alignments and progressive multiple alignment. We evaluate the performance of the algorithm on test examples from the RFAM database. Conclusion A program, Stemloc, that implements these algorithms for efficient RNA sequence alignment and structure prediction is available under the GNU General Public License.

  10. Spaced Seed Data Structures for De Novo Assembly

    Directory of Open Access Journals (Sweden)

    Inanç Birol

    2015-01-01

    Full Text Available De novo assembly of the genome of a species is essential in the absence of a reference genome sequence. Many scalable assembly algorithms use the de Bruijn graph (DBG paradigm to reconstruct genomes, where a table of subsequences of a certain length is derived from the reads, and their overlaps are analyzed to assemble sequences. Despite longer subsequences unlocking longer genomic features for assembly, associated increase in compute resources limits the practicability of DBG over other assembly archetypes already designed for longer reads. Here, we revisit the DBG paradigm to adapt it to the changing sequencing technology landscape and introduce three data structure designs for spaced seeds in the form of paired subsequences. These data structures address memory and run time constraints imposed by longer reads. We observe that when a fixed distance separates seed pairs, it provides increased sequence specificity with increased gap length. Further, we note that Bloom filters would be suitable to implicitly store spaced seeds and be tolerant to sequencing errors. Building on this concept, we describe a data structure for tracking the frequencies of observed spaced seeds. These data structure designs will have applications in genome, transcriptome and metagenome assemblies, and read error correction.

  11. Structural Assembly for Cold Plate Cooling

    Science.gov (United States)

    Zaffetti, Mark A. (Inventor); Taddey, Edmund P. (Inventor)

    2014-01-01

    A device including a structural member having a heat spreader and an electronic device mounted directly to a first surface of the heat spreader of the structural member. The device also includes a cold plate mounted directly to the first surface of the heat spreader of the structural member.

  12. Gradient limitations in room temperature and superconducting acceleration structures

    Energy Technology Data Exchange (ETDEWEB)

    Solyak, N.A.; /Fermilab

    2008-10-01

    Accelerating gradient is a key parameter of the accelerating structure in large linac facilities, like future Linear Collider. In room temperature accelerating structures the gradient is limited mostly by breakdown phenomena, caused by high surface electric fields or pulse surface heating. High power processing is a necessary procedure to clean surface and improve the gradient. In the best tested X-band structures the achieved gradient is exceed 100 MV/m in of {approx}200 ns pulses for breakdown rate of {approx} 10{sup -7}. Gradient limit depends on number of factors and no one theory which can explain all sets of experimental results and predict gradient in new accelerating structure. In paper we briefly overview the recent experimental results of breakdown studies, progress in understanding of gradient limitations and scaling laws. Although superconducting rf technology has been adopted throughout the world for ILC, it has frequently been difficult to reach the predicted performance in these structures due to a number of factors: multipactoring, field emission, Q-slope, thermal breakdown. In paper we are discussing all these phenomena and the ways to increase accelerating gradient in SC cavity, which are a part of worldwide R&D program.

  13. Extensive set of macros for structured programing in OS/360 assembly language (STRCMACS)

    Science.gov (United States)

    Barth, C. W.

    1975-01-01

    Development of consistent assembly language structured programming techniques has been enhanced by use of assembly macros developed for structured programing. Set of macros was written for IBM OS/360 Assembly language.

  14. Structural simulation and modeling for assembly in real space

    International Nuclear Information System (INIS)

    FIESTA (Finite Element Structural analysis for Assembly) is a large scale simulation, which concerns a simulation space to bring real world in digital space, such as so named either virtual reality or virtual facility. In order to establish a huge and complex object like nuclear facilities of a real world, there are lack of methodology and technology for reproducing facilities in digital space. FIESTA attempts to realize an assembly structural analysis for supplying one of the methodologies to reproduce facilities in digital space. The first attempt of the structural analysis for assembly is accomplished by finite element analysis by integrating parts of facilities. Since the structural analysis for assembly requests massive calculation, parallel and distributed computing was applied for the computational environment. It has been practiced numerical experiments for a test reactor driven by JAEA. The structural analysis for assembly by finite element method is confirmed to be able to analyze a huge and complex facility and show results of numerical experiment by applying to a test reactor driven by JAEA. (author)

  15. Electrostatic Force Microscopy of Self Assembled Peptide Structures

    DEFF Research Database (Denmark)

    Clausen, Casper Hyttel; Dimaki, Maria; Pantagos, Spyros P.;

    2011-01-01

    In this report electrostatic force microscopy (EFM) is used to study different peptide self-assembled structures, such as tubes and particles. It is shown that not only geometrical information can be obtained using EFM, but also information about the composition of different structures. In...

  16. Design of a beam shaping assembly and preliminary modelling of a treatment room for accelerator-based BNCT at CNEA

    International Nuclear Information System (INIS)

    This work reports on the characterisation of a neutron beam shaping assembly (BSA) prototype and on the preliminary modelling of a treatment room for BNCT within the framework of a research programme for the development and construction of an accelerator-based BNCT irradiation facility in Buenos Aires, Argentina. The BSA prototype constructed has been characterised by means of MCNP simulations as well as a set of experimental measurements performed at the Tandar accelerator at the National Atomic Energy Commission of Argentina. - Highlights: ► Characterisation of a neutron beam shaping assembly for accelerator-based BNCT. ► Measurements: total and epi-cadmium neutron fluxes and beam homogeneity. ► Calculations: Monte Carlo simulations with the MCNP code. ► Measured and calculated figure-of-merit parameters in agreement with those of IAEA. ► Initial MCNP dose calculations for a treatment room to define future design actions.

  17. Laser fields in dynamically ionized plasma structures for coherent acceleration

    CERN Document Server

    Luu-Thanh, Ph.; Pukhov, A.; Kostyukov, I.

    2015-01-01

    With the emergence of the CAN (Coherent Amplification Network) laser technology, a new scheme for direct particle acceleration in periodic plasma structures has been proposed. By using our full electromagnetic relativistic particle-in-cell (PIC) simulation code equipped with ionisation module, we simulate the laser fields dynamics in the periodic structures of different materials. We study how the dynamic ionization influences the field structure.

  18. A Precise Packing Sequence for Self-Assembled Convex Structures

    Science.gov (United States)

    Chen, Ting; Zhang, Zhenli; Glotzer, Sharon

    2007-03-01

    We present molecular simulations of the self-assembly of cone-shaped particles with patchy, attractive interactions[1,2]. Upon cooling from random initial conditions, we find that the cones self assemble into clusters and that clusters comprised of particular numbers of cones have a unique and precisely packed structure that is robust over a range of cone angles. These precise clusters form precise packing sequence that for small sizes is identical to that observed in evaporation-driven assembly of colloidal spheres. This sequence is reproduced and extended in simulations of two simple models of spheres self-assembling from random initial conditions subject to convexity constraints, and contains six of the most common virus capsid structures obtained in vivo including large chiral clusters, and a cluster that may correspond to several non- icosahedral, spherical virus capsid structures obtained in vivo. For prolate spheroidal convexity conditions, we demonstrate the formation of several prolate virus structures from self-assembling hard spheres[3]. [1] Chen T, Zhang ZL, Glotzer SC, PNAS, in press (http://xxx.lanl.gov/pdf/cond-mat/ 0608592) [2] Chen T, Zhang ZL, Glotzer SC, http://xxx.lanl.gov/pdf/cond-mat/0608613 [3] Chen T, Glotzer SC http://xxx.lanl.gov/pdf/q-bio.BM/0608040

  19. Highly Compact Accelerator-Driven Subcritical Assembly for Medical and Industrial Applications

    International Nuclear Information System (INIS)

    A novel, highly compact, fusion neutron source (CNS) based on a coaxial electrostatic accelerator is under development at the Lawrence Berkeley National Laboratory. This source is designed to generate up to ∼1012 D-D n/s. This source intensity is an order of magnitude too small for Boron Neutron Capture Therapy (BNCT) applications. The objective of this project is to assess the feasibility of using a small, safe and inexpensive subcritical fission assembly to multiply the fusion neutrons by a factor of (ge)30. The overall design objective is to get a treatment time for deep seated rain tumors that does not significantly increase beyond one hour when the effective multiplication factor of the SCM is keff = 0.98. There are two major parts to this study: the optimization of the Sub-Critical Multiplier (SCM) and the optimization of the Beam Shaping Assembly (BSA), including the reflector for both subsystems. The SCM optimization objective is to maximize the current of neutrons that leak out from the SCM in the direction of the patient, without exceeding the maximum permissible keff. Minimizing the required uranium inventory is another objective. SCM design variables considered include the uranium enrichment level in the range not exceeding 20% 235U (for proliferation concerns), SCM geometry and dimensions, fuel thickness and moderator thickness. The objective of the BSA optimization is to maximize the tumor dose rate using the optimal SCM while maintaining a tumor-to-normal tissue dose ratio of at least 20 to 12.5 (corresponding to the tumor control dose and to the healthy tissue dose limit). The BSA design variables include its shape, dimensions and composition. The reflector optimization is, in fact, an integral part of the SCM optimization and of the BSA optimization. The reflector design variables are composition and thickness. The study concludes that it is not quite feasible to achieve the project objective. Nevertheless, it appears feasible to develop a

  20. Self Assembled Structures by Directional Solidification of Eutectics

    Science.gov (United States)

    Dynys, Frederick W.; Sayir, Ali

    2004-01-01

    Interest in ordered porous structures has grown because of there unique properties such as photonic bandgaps, high backing packing density and high surface to volume ratio. Inspired by nature, biometric strategies using self assembled organic molecules dominate the development of hierarchical inorganic structures. Directional solidification of eutectics (DSE) also exhibit self assembly characteristics to form hierarchical metallic and inorganic structures. Crystallization of diphasic materials by DSE can produce two dimensional ordered structures consisting of rods or lamella. By selective removal of phases, DSE is capable to fabricate ordered pore arrays or ordered pin arrays. Criteria and limitations to fabricate hierarchical structures will be presented. Porous structures in silicon base alloys and ceramic systems will be reported.

  1. In-Space Structural Assembly: Applications and Technology

    Science.gov (United States)

    Belvin, W. Keith; Doggett, Bill R.; Watson, Judith J.; Dorsey, John T.; Warren, Jay; Jones, Thomas C.; Komendera, Erik E.; Mann, Troy O.; Bowman, Lynn

    2016-01-01

    As NASA exploration moves beyond earth's orbit, the need exists for long duration space systems that are resilient to events that compromise safety and performance. Fortunately, technology advances in autonomy, robotic manipulators, and modular plug-and-play architectures over the past two decades have made in-space vehicle assembly and servicing possible at acceptable cost and risk. This study evaluates future space systems needed to support scientific observatories and human/robotic Mars exploration to assess key structural design considerations. The impact of in-space assembly is discussed to identify gaps in structural technology and opportunities for new vehicle designs to support NASA's future long duration missions.

  2. Vacuum arc localization in CLIC prototype radio frequency accelerating structures

    CERN Document Server

    AUTHOR|(CDS)2091976; Koivunen, Visa

    2016-04-04

    A future linear collider capable of reaching TeV collision energies should support accelerating gradients beyond 100 MV/m. At such high fields, the occurrence of vacuum arcs have to be mitigated through conditioning, during which an accelerating structure’s resilience against breakdowns is slowly increased through repeated radio frequency pulsing. Conditioning is very time and resource consuming, which is why developing more efficient procedures is desirable. At CERN, conditioning related research is conducted at the CLIC high-power X-band test stands. Breakdown localization is an important diagnostic tool of accelerating structure tests. Abnormal position distributions highlight issues in structure design, manufacturing or operation and may consequently help improve these processes. Additionally, positioning can provide insight into the physics of vacuum arcs. In this work, two established positioning methods based on the time-difference-ofarrival of radio frequency waves are extended. The first method i...

  3. Cosmic Ray Acceleration during Large Scale Structure Formation

    CERN Document Server

    Blasi, P

    2004-01-01

    Clusters of galaxies are storage rooms of cosmic rays. They confine the hadronic component of cosmic rays over cosmological time scales due to diffusion, and the electron component due to energy losses. Hadronic cosmic rays can be accelerated during the process of structure formation, because of the supersonic motion of gas in the potential wells created by dark matter. At the shock waves that result from this motion, charged particles can be energized through the first order Fermi process. After discussing the most important evidences for non-thermal phenomena in large scale structures, we describe in some detail the main issues related to the acceleration of particles at these shock waves, emphasizing the possible role of the dynamical backreaction of the accelerated particles on the plasmas involved.

  4. ELECTRONIC STRUCTURE OF CLUSTER ASSEMBLED Al12C (Si) SOLID

    Institute of Scientific and Technical Information of China (English)

    QUAN HONG-JUN; GONG XIN-GAO

    2000-01-01

    The electronic structures of the cluster-assembled solid Al12C (Si) are studied by the ab initio method. We find that Al12C (Si) can solidify into a van der Waals solid. The electronic band structures show very weak dispersion. The main features in the electronic structure of cluster are retained in the solid, and an energy gap up to about 1.5 eV is observed for Al12C and Al12Si solids.

  5. Dielectric-Lined High-Gradient Accelerator Structure

    Energy Technology Data Exchange (ETDEWEB)

    Jay L. Hirshfield

    2012-04-24

    Rectangular particle accelerator structures with internal planar dielectric elements have been studied, with a view towards devising structures with lower surface fields for a given accelerating field, as compared with structures without dielectrics. Success with this concept is expected to allow operation at higher accelerating gradients than otherwise on account of reduced breakdown probabilities. The project involves studies of RF breakdown on amorphous dielectrics in test cavities that could enable high-gradient structures to be built for a future multi-TeV collider. The aim is to determine what the limits are for RF fields at the surfaces of selected dielectrics, and the resulting acceleration gradient that could be achieved in a working structure. The dielectric of principal interest in this study is artificial CVD diamond, on account of its advertised high breakdown field ({approx}2 GV/m for dc), low loss tangent, and high thermal conductivity. Experimental studies at mm-wavelengths on materials and structures for achieving high acceleration gradient were based on the availability of the 34.3 GHz third-harmonic magnicon amplifier developed by Omega-P, and installed at the Yale University Beam Physics Laboratory. Peak power from the magnicon was measured to be about 20 MW in 0.5 {micro}s pulses, with a gain of 54 dB. Experiments for studying RF high-field effects on CVD diamond samples failed to show any evidence after more than 10{sup 5} RF pulses of RF breakdown up to a tangential surface field strength of 153 MV/m; studies at higher fields were not possible due to a degradation in magnicon performance. A rebuild of the tube is underway at this writing. Computed performance for a dielectric-loaded rectangular accelerator structure (DLA) shows highly competitive properties, as compared with an existing all-metal structure. For example, comparisons were made of a DLA structure having two planar CVD diamond elements with a all-metal CERN structure HDS

  6. RF impedance measurements on the DARHT-II accelerator intercell assembly

    Energy Technology Data Exchange (ETDEWEB)

    Fawley, William M.; Eylon, Shmuel; Briggs, Richard

    2003-05-05

    We report upon recent experimental measurements made of RF properties of the intercell assembly of the second axis accelerator[1] of Dual Axis Radiographic Hydrodynamic Test (DARHT) facility at LANL. The intercells provide both pumping and diagnostic access to the main DARHT-II beamline. Their design includes a pumping plenum separated from the main beam pipe by return current rods together with RF shielding provided by a copper-coated stainless steel mesh. Measurements using the twin lead technique (see Ref. [2]) at low frequencies (f < 200 MHz) suggest a constant value for the ratio h of the radial and azimuthal magnetic field components to which the transverse impedance is linearly related. We find that these results compare favorably to predictions from a simple analytic, lumped circuit model which includes the effects of the mesh and return current rods. We also present RF loop-to-loop frequency scans above beam pipe cutoff ({approx}600 MHz) showing the existence of many RF modes with relatively high Q's.

  7. Structure of Accelerated Learning Program (ALP) Efforts, 2000-01.

    Science.gov (United States)

    Baenen, Nancy; Yaman, Kimberly

    This report focuses on the structure of instructional assistance available through the Accelerated Learning Program (ALP) to students who show low achievement in the Wake County Public School System (WCPSS), North Carolina. Context information is also provided on other programs available to these students. Reports on ALP student participation,…

  8. Design and Construction of the Linac4 Accelerating Structures

    CERN Document Server

    Gerigk, F; Dallocchio, A; Favre, G; Vretenar, M; Wegner, R; Tirado, P Ugena; Rossi, C; Riffaud, B; Ramberger, S; Polini, M; Gentini, L; Geisser, JM; Giguet, JM; Mathot, S; Naumenko, M; Kendjebulatov, E; Tribendis, A; Kryuchkov, Ya

    2013-01-01

    The Linac4 project at CERN is at an advanced state of construction. Prototypes and/or operational modules of the different types of accelerating structures (RFQ, buncher, DTL, CCDTL, and PIMS) have been built and are presently tested. This paper gives the status of the cavity production and reviews the RF and mechanical design of the various structure types. Furthermore the production experience and the first test results shall be presented.

  9. Status of the Fatigue Studies on the CLIC Accelerating Structures

    CERN Document Server

    Calatroni, S; Neupert, H; Wuensch, Walter; CERN. Geneva

    2006-01-01

    The need for high accelerating gradients for the future multi-TeV e+e- Compact Linear Collider (CLIC) imposes considerable constraints on the materials of the accelerating structures. The surfaces exposed to high pulsed RF (Radio Frequency) currents are subject to cyclic thermal stresses which are expected to induce surface break up by fatigue. Since no fatigue data exists in the literature up to very large numbers of cycles and for the particular stress pattern present in RF cavities, a comprehensive study of copper alloys in this parameter range has been initiated. Fatigue data for selected copper alloys in different states are presented

  10. Verification Test of Automated Robotic Assembly of Space Truss Structures

    Science.gov (United States)

    Rhodes, Marvin D.; Will, Ralph W.; Quach, Cuong C.

    1995-01-01

    A multidisciplinary program has been conducted at the Langley Research Center to develop operational procedures for supervised autonomous assembly of truss structures suitable for large-aperture antennas. The hardware and operations required to assemble a 102-member tetrahedral truss and attach 12 hexagonal panels were developed and evaluated. A brute-force automation approach was used to develop baseline assembly hardware and software techniques. However, as the system matured and operations were proven, upgrades were incorporated and assessed against the baseline test results. These upgrades included the use of distributed microprocessors to control dedicated end-effector operations, machine vision guidance for strut installation, and the use of an expert system-based executive-control program. This paper summarizes the developmental phases of the program, the results of several assembly tests, and a series of proposed enhancements. No problems that would preclude automated in-space assembly or truss structures have been encountered. The test system was developed at a breadboard level and continued development at an enhanced level is warranted.

  11. From coordination polymers to hierarchical self-assembled structures

    NARCIS (Netherlands)

    Yan, Y.; Keizer, de A.; Cohen Stuart, M.A.; Besseling, N.A.M.

    2011-01-01

    In this review, novel hierarchical self-assembled structures based on reversible organo-metallic supramolecular polymers are discussed. Firstly, we discuss recent advances in the field of coordination polymers, considering cases in which transition metal ions and bis- or multiligands are used to bui

  12. 29 CFR 1926.754 - Structural steel assembly.

    Science.gov (United States)

    2010-07-01

    ... Transportation Officials (AASHTO) and other organizations. (See 23 CFR 625.4). Many of these incorporated..., Div. II, § 3.2.1, 15th edition, 1992, which FHWA incorporates by reference in 23 CFR 625.4). FHWA also... 29 Labor 8 2010-07-01 2010-07-01 false Structural steel assembly. 1926.754 Section 1926.754...

  13. H-Mode Accelerating Structures with PMQ Beam Focusing

    CERN Document Server

    Kurennoy, Sergey S; O'Hara, James F; Olivas, Eric R; Wangler, Thomas P

    2011-01-01

    We have developed high-efficiency normal-conducting RF accelerating structures by combining H-mode resonator cavities and a transverse beam focusing by permanent-magnet quadrupoles (PMQ), for beam velocities in the range of a few percent of the speed of light. The shunt impedance of inter-digital H-mode (IH-PMQ) structures is 10-20 times higher than that of a conventional drift-tube linac, while the transverse size is 4-5 times smaller. Results of the combined 3-D modeling - electromagnetic computations, multi-particle beam-dynamics simulations with high currents, and thermal-stress analysis - for an IH-PMQ accelerator tank are presented. The accelerating field profile in the tank is tuned to provide the best propagation of a 50-mA deuteron beam using coupled iterations of electromagnetic and beam-dynamics modeling. Measurements of a cold model of the IH-PMQ tank show a good agreement with the calculations. H-PMQ accelerating structures following a short RFQ can be used both in the front end of ion linacs or ...

  14. Gravitational energy as dark energy: Cosmic structure and apparent acceleration

    CERN Document Server

    Wiltshire, David L

    2011-01-01

    Below scales of about 100/h Mpc our universe displays a complex inhomogeneous structure dominated by voids, with clusters of galaxies in sheets and filaments. The coincidence that cosmic expansion appears to start accelerating at the epoch when such structures form has prompted a number of researchers to question whether dark energy is a signature of a failure of the standard cosmology to properly account, on average, for the distribution of matter we observe. Here I discuss the timescape scenario, in which cosmic acceleration is understood as an apparent effect, due to gravitational energy gradients that grow when spatial curvature gradients become significant with the nonlinear growth of cosmic structure. I discuss conceptual issues related to the averaging problem, and their impact on the calibration of local geometry to the solutions of the volume-average evolution equations corrected by backreaction, and the question of nonbaryonic dark matter in the timescape framework. I further discuss recent work on ...

  15. Comparison of the conditioning of High Gradient Accelerating Structures

    CERN Document Server

    Degiovanni, Alberto; Giner Navarro, Jorge

    2015-01-01

    Accelerating gradients in excess of 100 MV/m, at very low breakdown rates, have been successfully achieved in numerous CLIC prototype accelerating structures. The conditioning and operational histories of several structures, tested at KEK and CERN, have been compared and there is clear evidence that the conditioning progresses with the number of RF pulses and not the number of breakdowns. This observation opens the possibility that the optimum conditioning strategy, which minimizes the total number of breakdowns the structure is subject to without increasing conditioning time, may be to never exceed the breakdown rate target for operation. The result is also likely to have a strong impact on efforts to understand the physical mechanism underlying conditioning and may lead to preparation procedures which reduce conditioning time.

  16. Welding machine and welding process for nuclear fuel assembly structures

    International Nuclear Information System (INIS)

    The welding device comprises a mounting jig which receives the guide tubes and the assembly supporting structures in the desired spatial orientation. It also comprises a welding head which can travel on rails along the length of the guide tubes and has at least a welding spring chuck movable in two axes and rotatable relative to the welding machine; the spring chuck can pass between two adjacent tube rows and takes a tubes where a weld is necessary. The welding spring chuck can apply spot-welding pulses. This is used for the assembly of guide tubes and bundles for water-cooled nuclear reactors

  17. Amyloid Structure and Assembly: Insights from Scanning Transmission Electron Microscopy

    Energy Technology Data Exchange (ETDEWEB)

    Goldsbury, C.; Wall, J.; Baxa, U.; Simon, M. N.; Steven, A. C.; Engel, A.; Aebi, U.; Muller, S. A.

    2011-01-01

    Amyloid fibrils are filamentous protein aggregates implicated in several common diseases such as Alzheimer's disease and type II diabetes. Similar structures are also the molecular principle of the infectious spongiform encephalopathies such as Creutzfeldt-Jakob disease in humans, scrapie in sheep, and of the so-called yeast prions, inherited non-chromosomal elements found in yeast and fungi. Scanning transmission electron microscopy (STEM) is often used to delineate the assembly mechanism and structural properties of amyloid aggregates. In this review we consider specifically contributions and limitations of STEM for the investigation of amyloid assembly pathways, fibril polymorphisms and structural models of amyloid fibrils. This type of microscopy provides the only method to directly measure the mass-per-length (MPL) of individual filaments. Made on both in vitro assembled and ex vivo samples, STEM mass measurements have illuminated the hierarchical relationships between amyloid fibrils and revealed that polymorphic fibrils and various globular oligomers can assemble simultaneously from a single polypeptide. The MPLs also impose strong constraints on possible packing schemes, assisting in molecular model building when combined with high-resolution methods like solid-state nuclear magnetic resonance (NMR) and electron paramagnetic resonance (EPR).

  18. On radiative acceleration in spine-sheath structured blazar jets

    CERN Document Server

    Chhotray, Atul; Ghisellini, Gabriele; Salafia, Om Sharan; Tavecchio, Fabrizio; Lazzati, Davide

    2016-01-01

    It has been proposed that blazar jets are structured, with a fast spine surrounded by a slower sheath or layer. This structured jet model explains some properties of their emission and morphology. Because of their relative motion, the radiation produced by one component is seen amplified by the other, thus enhancing the inverse Compton emission of both. Radiation is emitted anisotropically in the comoving frames, and causes the emitting plasma to recoil. As seen in the observer frame, this corresponds to a deceleration of the fastest component (the spine) and an acceleration of the slower one (the layer). While the deceleration of the spine has already been investigated, here we study for the first time the acceleration of the sheath and find self-consistent velocity profile solutions for both the spine and the sheath while accounting for radiative cooling. We find that the sheath can be accelerated to the velocities required by the observations if its leptons remain energetic in the acceleration region, assu...

  19. Self-assembly protocol design for periodic multicomponent structures.

    Science.gov (United States)

    Jacobs, William M; Frenkel, Daan

    2015-12-14

    Assembling molecular superstructures with many distinct components will allow unprecedented control over morphology at the nanoscale. Recently, this approach has been used to assemble periodic structures with precisely defined features, such as repeating arrays of pores and channels, using a large number of building blocks. Here we propose a predictive tool that allows us to optimize the nucleation and growth of unbounded, ordered structures. In what follows, we call these structures 'crystals', even though they may only be periodic in one or two dimensions. We find that the nucleation barriers and growth pathways for crystals consisting of many components exhibit generic features that are very different from those of simple crystals. To illustrate the very non-classical nature of the nucleation and growth of such structures, we study the formation of one and two-dimensional crystals with multicomponent unit cells. We find that, whilst the boundaries in the non-periodic dimensions significantly affect the stabilities of these crystals, the nucleation barriers are largely determined by the local connectivity of the associated bulk crystal and are independent of the number of distinct components in the unit cell. We predict that the self-assembly of crystals with complex morphologies can be made to follow specific pathways toward the target structure that successively incorporate key features of the three-dimensional target structure. In contrast with simple crystals, it is possible to tune the kinetics of nucleation and growth separately, thus minimizing defect formation. We show how control over self-assembly pathways can be used to optimize the kinetics of formation of extended structures with arbitrary nanoscale patterns. PMID:26404794

  20. Development of X-band accelerating structures for high gradients

    Institute of Scientific and Technical Information of China (English)

    S. Bini; M. G. Grimaldi; L. Romano; F. Ruffino; R. Parodi; V. Chimenti; A. Marcelli; L. Palumbo; B. Spataro; V. A. Dolgashev; S. Tantawi; A.D. Yeremian; Y. Higashi

    2012-01-01

    Short copper standing wave (SW) structures operating at an X-band frequency have been recently designed and manufactured at the Laboratori Nazionali di Frascati of the Istituto Nazionale di Fisica Nucleare (INFN) using the vacuum brazing technique.High power tests of the structures have been performed at the SLAC National Accelerator Laboratory.In this manuscript we report the results of these tests and the activity in progress to enhance the high gradient performance of the next generation of structures,particularly the technological characterization of high performance coatings obtained via molybdenum sputtering.

  1. Engineering Design of a Multipurpose X-band Accelerating Structure

    CERN Document Server

    Gudkov, Dmitry; Samoshkin, Alexander; Zennaro, Riccardo; Dehler, Micha; Raguin, Jean-Yves

    2010-01-01

    Both FEL projects, SwissFEL and Fermi-Elettra each require an X-band RF accelerating structure for optimal bunch compression at the respective injectors. As the CLIC project is pursuing a program for producing and testing the X-band high-gradient RF structures, a collaboration between PSI, Elettra and CERN has been established to build a multipurpose X-band accelerating structure. This paper focuses on its engineering design, which is based on the disked cells jointed together by diffusion bonding. Vacuum brazing and laser beam welding is used for auxiliary components. The accelerating structure consists of two coupler subassemblies, 73 disks and includes a wakefield monitor and diagnostic waveguides. The engineering study includes the external cooling system, consisting of two parallel cooling circuits and an RF tuning system, which allows phase advance tuning of the cell by deforming the outer wall. The engineering solution for the installation and sealing of the wake field monitor feed-through devices that...

  2. Material studies in the frame of CLIC Accelerating structures production conducted within the Mechanics program together with Metso Oy

    CERN Document Server

    Nurminen, Janne

    2012-01-01

    MeChanICs (Marie Curie Linking Industry to CERN) is an Industry to Academia Partnership and Pathways (IAPP) platform for precision manufacturing knowledge exchange bringing together five Finnish manufacturing companies with Helsinki Insitute of Physics (HIP) and CERN. The scientific objective of MeChanICs project is to contribute to the manufacturing RTD of CLIC enabling technologies. The focus is on the design, materials, machining, brazing and assembly of A CLIC accelerating structure. This study deals with the materials work package of the program and wants to explore the following items: 1) producing copper accelerating structures for CLIC from raw copper powder by near net shape hot isostatic pressing (HIP). 2) The feasibility to use HIP diffusion bonding of the accelerator structures as a function of surface quality and applied temperature and pressure. 3) Brazing for CLIC AS auxiliary systems, like water cooling or damping manifolds, to the disc stack by coating one of the brazing partners with an enab...

  3. Experimental and Simulated Characterization of a Beam Shaping Assembly for Accelerator- Based Boron Neutron Capture Therapy (AB-BNCT)

    International Nuclear Information System (INIS)

    In the frame of the construction of a Tandem Electrostatic Quadrupole Accelerator facility devoted to the Accelerator-Based Boron Neutron Capture Therapy, a Beam Shaping Assembly has been characterized by means of Monte-Carlo simulations and measurements. The neutrons were generated via the 7Li(p, n)7Be reaction by irradiating a thick LiF target with a 2.3 MeV proton beam delivered by the TANDAR accelerator at CNEA. The emerging neutron flux was measured by means of activation foils while the beam quality and directionality was evaluated by means of Monte Carlo simulations. The parameters show compliance with those suggested by IAEA. Finally, an improvement adding a beam collimator has been evaluated.

  4. Accelerator

    International Nuclear Information System (INIS)

    The invention claims equipment for stabilizing the position of the front covers of the accelerator chamber in cyclic accelerators which significantly increases accelerator reliability. For stabilizing, it uses hydraulic cushions placed between the electromagnet pole pieces and the front chamber covers. The top and the bottom cushions are hydraulically connected. The cushions are disconnected and removed from the hydraulic line using valves. (J.P.)

  5. Accelerating VASP electronic structure calculations using graphic processing units

    KAUST Repository

    Hacene, Mohamed

    2012-08-20

    We present a way to improve the performance of the electronic structure Vienna Ab initio Simulation Package (VASP) program. We show that high-performance computers equipped with graphics processing units (GPUs) as accelerators may reduce drastically the computation time when offloading these sections to the graphic chips. The procedure consists of (i) profiling the performance of the code to isolate the time-consuming parts, (ii) rewriting these so that the algorithms become better-suited for the chosen graphic accelerator, and (iii) optimizing memory traffic between the host computer and the GPU accelerator. We chose to accelerate VASP with NVIDIA GPU using CUDA. We compare the GPU and original versions of VASP by evaluating the Davidson and RMM-DIIS algorithms on chemical systems of up to 1100 atoms. In these tests, the total time is reduced by a factor between 3 and 8 when running on n (CPU core + GPU) compared to n CPU cores only, without any accuracy loss. © 2012 Wiley Periodicals, Inc.

  6. Electromagnetic simulation study of dielectric wall accelerator structures

    Institute of Scientific and Technical Information of China (English)

    ZHAO Quan-Tang; ZHANG Zi-Min; YUAN Ping; CAO Shu-Chun; SHEN Xiao-Kang; JING Yi; LIU Ming; ZHAO Hong-Wei

    2012-01-01

    Two types of dielectric wall accelerator (DWA) structures,a bi-polar Blumlein line and zero integral pulse line (ZIP) structures were investigated.The high gradient insulator simulated by the particle in cell code confirms that it has little influence on the axial electric field.The results of simulations using CST microwave studio indicate how the axial electric field is formed,and the electric field waveforms agree with the theoretical one very well.The influence of layer-to-layer coupling in a ZIP structure is much smaller and the electric field waveform is much better.The axial of the Blumlein structure's electric field has better axial stability.From both of the above,it found that for a shorter pulse width,the axial electric field is much higher and the pulse stability and fidelity are much better.The CST simulation is very helpful for designing DWA structures.

  7. H-Mode Accelerating Structures with PMQ Beam Focusing

    OpenAIRE

    Kurennoy, Sergey S.; Rybarcyk, Lawrence J.; O'Hara, James F.; Olivas, Eric R.; Wangler, Thomas P.

    2011-01-01

    We have developed high-efficiency normal-conducting RF accelerating structures by combining H-mode resonator cavities and a transverse beam focusing by permanent-magnet quadrupoles (PMQ), for beam velocities in the range of a few percent of the speed of light. The shunt impedance of inter-digital H-mode (IH-PMQ) structures is 10-20 times higher than that of a conventional drift-tube linac, while the transverse size is 4-5 times smaller. Results of the combined 3-D modeling - electromagnetic c...

  8. Simulations and Vacuum Tests of a CLIC Accelerating Structure

    CERN Document Server

    Garion, C

    2011-01-01

    The Compact LInear Collider, under study, is based on room temperature high gradient structures. The vacuum specificities of these cavities are low conductance, large surface areas and a non-baked system. The main issue is to reach UHV conditions (typically 10-7 Pa) in a system where the residual vacuum is driven by water outgassing. A finite element model based on an analogy thermal/vacuum has been built to estimate the vacuum profile in an accelerating structure. Vacuum tests are carried out in a dedicated set-up, the vacuum performances of different configurations are presented and compared with the predictions.

  9. Precise fabrication of X-band accelerating structure

    International Nuclear Information System (INIS)

    An accelerating structure with a/λ=0.16 is being fabricated to study a precise fabrication method. A frequency control of each cell better than 10-4 level is required to realize a detuned structure. The present machining level is nearly 1 MHz/11.4 GHz in relative frequency error, which just satisfies the above requirement. To keep this machining precision, the diffusion bonding technique is found preferable to join the cells. Various diffusion conditions were tried. The frequency change can be less than 1 MHz/11.4 GHz and it can be controlled well better than that. (author)

  10. Moisture and Structural Analysis for High Performance Hybrid Wall Assemblies

    Energy Technology Data Exchange (ETDEWEB)

    Grin, A. [Building Science Corporation (BSC), Somerville, MA (United States); Lstiburek, J. [Building Science Corporation (BSC), Somerville, MA (United States)

    2012-09-01

    Based on past experience in the Building America program, BSC has found that combinations of materials and approaches—in other words, systems—usually provide optimum performance. Integration is necessary, as described in this research project. The hybrid walls analyzed utilize a combination of exterior insulation, diagonal metal strapping, and spray polyurethane foam and leave room for cavity-fill insulation. These systems can provide effective thermal, air, moisture, and water barrier systems in one assembly and provide structure.

  11. The Effects of Gramicidin on the Structure of Phospholipid Assemblies

    OpenAIRE

    Szule, J. A.; Rand, R. P.

    2003-01-01

    Gramicidin is an antibiotic peptide that can be incorporated into the monolayers of cell membranes. Dimerization through hydrogen bonding between gramicidin monomers in opposing leaflets of the membrane results in the formation of an iontophoretic channel. Surrounding phospholipids influence the gating properties of this channel. Conversely, gramicidin incorporation has been shown to affect the structure of spontaneously formed lipid assemblies. Using small-angle x-ray diffraction and model s...

  12. Crystal structure of an HIV assembly and maturation switch

    Energy Technology Data Exchange (ETDEWEB)

    Wagner, Jonathan M.; Zadrozny, Kaneil K.; Chrustowicz, Jakub; Purdy, Michael D.; Yeager, Mark; Ganser-Pornillos, Barbie K.; Pornillos, Owen

    2016-07-14

    Virus assembly and maturation proceed through the programmed operation of molecular switches, which trigger both local and global structural rearrangements to produce infectious particles. HIV-1 contains an assembly and maturation switch that spans the C-terminal domain (CTD) of the capsid (CA) region and the first spacer peptide (SP1) of the precursor structural protein, Gag. The crystal structure of the CTD-SP1 Gag fragment is a goblet-shaped hexamer in which the cup comprises the CTD and an ensuing type II β-turn, and the stem comprises a 6-helix bundle. The β-turn is critical for immature virus assembly and the 6-helix bundle regulates proteolysis during maturation. This bipartite character explains why the SP1 spacer is a critical element of HIV-1 Gag but is not a universal property of retroviruses. Our results also indicate that HIV-1 maturation inhibitors suppress unfolding of the CA-SP1 junction and thereby delay access of the viral protease to its substrate.

  13. Superconducting Accelerating Structure with Gradient as 2 Times Higher as TESLA Structure

    CERN Document Server

    Avrakhov, P V

    2004-01-01

    A proposed new accelerating structure for TESLA is assumed to have an effective gradient 2 times more than existing 9-cell cavity. This structure is an interlaced combination of two side-cavity-coupled standing wave substructures with λ/4 cells length. Intercell coupling provides side-coupled cavities made from a special shape waveguide section. The high accelerating gradient is accomplished by 4 factors: The shortened accelerating cells have transit time factor 0.9 instead of 0.64 for conventional standing wave cells with λ/2 length. The side magnetic coupling has made it possible to reduce the cells beam aperture that reduce relation between the maximum surface field and the acceleration gradient. Stronger intercell coupling allows extending the accelerating cavity and improving a duty factor of linac. Availability of the side coupling elements enables to use them for power input and HOM-couplers. It reduces intercavity distance and enhances duty factor too.

  14. A tuning method for nonuniform traveling-wave accelerating structures

    International Nuclear Information System (INIS)

    The tuning method of uniform traveling-wave structures based on non-resonant perturbation field distribution measurement has been widely used in tuning both constant-impedance and constant-gradient structures. In this paper, the method of tuning nonuniform structures is proposed on the basis of the above theory. The internal reflection coefficient of each cell is obtained from analyzing the normalized voltage distribution. A numerical simulation of tuning process according to the coupled cavity chain theory has been done and the result shows each cell is in right phase advance after tuning. The method will be used in the tuning of a disk-loaded traveling-wave structure being developed at the Accelerator Laboratory, Tsinghua University. (authors)

  15. Design of Accelerator Online Simulator Server Using Structured Data

    Energy Technology Data Exchange (ETDEWEB)

    Shen, Guobao; /Brookhaven; Chu, Chungming; /SLAC; Wu, Juhao; /SLAC; Kraimer, Martin; /Argonne

    2012-07-06

    Model based control plays an important role for a modern accelerator during beam commissioning, beam study, and even daily operation. With a realistic model, beam behaviour can be predicted and therefore effectively controlled. The approach used by most current high level application environments is to use a built-in simulation engine and feed a realistic model into that simulation engine. Instead of this traditional monolithic structure, a new approach using a client-server architecture is under development. An on-line simulator server is accessed via network accessible structured data. With this approach, a user can easily access multiple simulation codes. This paper describes the design, implementation, and current status of PVData, which defines the structured data, and PVAccess, which provides network access to the structured data.

  16. Opal shell structures: direct assembly versus inversion approach.

    Science.gov (United States)

    Deng, Tian-Song; Sharifi, Parvin; Marlow, Frank

    2013-09-16

    Opal shell structures can be fabricated in two ways: By direct assembly from hollow spheres (hs-opal) or by infiltration of precursors into opal templates and inversion. The resulting lattice disturbances were characterized by scanning electron microscopy (SEM), optical microscopy, and transmission spectra. The hs-opal system shows much lower disturbances, for example, a lower number of cracks and lattice deformations. The strong suppression of crack formation in one of these inverse opal structures can be considered as promising candidates for the fabrication of more perfect photonic crystals.

  17. Self-assembled manganese oxide structures through direct oxidation

    KAUST Repository

    Zhao, Chao

    2012-12-01

    The morphology and phase of self-assembled manganese oxides during different stages of thermal oxidation were studied. Very interesting morphological patterns of Mn oxide films were observed. At the initial oxidation stage, the surface was characterized by the formation of ring-shaped patterns. As the oxidation proceeded to the intermediate stage, concentric plates formed to relax the compressive stress. Our experimental results gave a clear picture of the evolution of the structures. We also examined the properties of the structures. © 2012 Elsevier B.V.

  18. Fabrication Technologies of the High Gradient Accelerator Structures at 100MV/m Range

    CERN Document Server

    Wang, Juwen; Van Pelt, John; Yoneda, Charles; Gudkov, D; Riddone, Germana; Higo, Toshiyasu; Takatomi, Toshikazu

    2010-01-01

    A CERN-SLAC-KEK collaboration on high gradient X-band structure research has been established in order to demonstrate the feasibility of the CLIC baseline design for the main linac stably operating at more than 100 MV/m loaded accelerating gradient. Several prototype CLIC structures were successfully fabricated and high power tested. They operated at 105 MV/m with a breakdown rate that meets the CLIC linear collider specifications of <5×10-7/pulse/m. This paper summarizes the fabrication technologies including the mechanical design, precision machining, chemical cleaning, diffusion bonding as well as vacuum baking and all related assembly technologies. Also, the tolerances control, tuning and RF characterization will be discussed

  19. Fabrication Technologies of the High Gradient Accelerator Structures at 100MV/M Range

    Energy Technology Data Exchange (ETDEWEB)

    Wang, Juwen; /SLAC; Lewandowski, James; /SLAC; Van Pelt, John; /SLAC; Yoneda, Charles; /SLAC; Gudkov, Boris; /CERN; Riddone, Germana; /CERN; Higo, Toshiyasu; /KEK, Tsukuba; Takatomi, Toshikazu; /KEK, Tsukuba

    2012-07-03

    A CERN-SLAC-KEK collaboration on high gradient X-band structure research has been established in order to demonstrate the feasibility of the CLIC baseline design for the main linac stably operating at more than 100 MV/m loaded accelerating gradient. Several prototype CLIC structures were successfully fabricated and high power tested. They operated at 105 MV/m with a breakdown rate that meets the CLIC linear collider specifications of < 5 x 10{sup -7}/pulse/m. This paper summarizes the fabrication technologies including the mechanical design, precision machining, chemical cleaning, diffusion bonding as well as vacuum baking and all related assembly technologies. Also, the tolerances control, tuning and RF characterization will be discussed.

  20. Design of a beam shaping assembly and preliminary modelling of a treatment room for accelerator-based BNCT at CNEA

    Energy Technology Data Exchange (ETDEWEB)

    Burlon, A.A.; Girola, S. [Gerencia de Investigacion y Aplicaciones, Comision Nacional de Energia Atomica, San Martin (Argentina)] [Escuela de Ciencia y Tecnologia, Universidad Nacional de San Martin, San Martin (Argentina); Valda, A.A., E-mail: valda@tandar.cnea.gov.ar [Gerencia de Investigacion y Aplicaciones, Comision Nacional de Energia Atomica, San Martin (Argentina)] [Escuela de Ciencia y Tecnologia, Universidad Nacional de San Martin, San Martin (Argentina); Minsky, D.M.; Kreiner, A.J. [Gerencia de Investigacion y Aplicaciones, Comision Nacional de Energia Atomica, San Martin (Argentina)] [Escuela de Ciencia y Tecnologia, Universidad Nacional de San Martin, San Martin (Argentina)] [CONICET, Buenos Aires (Argentina); Sanchez, G. [Escuela de Ciencia y Tecnologia, Universidad Nacional de San Martin, San Martin (Argentina)

    2011-12-15

    This work reports on the characterisation of a neutron beam shaping assembly (BSA) prototype and on the preliminary modelling of a treatment room for BNCT within the framework of a research programme for the development and construction of an accelerator-based BNCT irradiation facility in Buenos Aires, Argentina. The BSA prototype constructed has been characterised by means of MCNP simulations as well as a set of experimental measurements performed at the Tandar accelerator at the National Atomic Energy Commission of Argentina. - Highlights: Black-Right-Pointing-Pointer Characterisation of a neutron beam shaping assembly for accelerator-based BNCT. Black-Right-Pointing-Pointer Measurements: total and epi-cadmium neutron fluxes and beam homogeneity. Black-Right-Pointing-Pointer Calculations: Monte Carlo simulations with the MCNP code. Black-Right-Pointing-Pointer Measured and calculated figure-of-merit parameters in agreement with those of IAEA. Black-Right-Pointing-Pointer Initial MCNP dose calculations for a treatment room to define future design actions.

  1. Summary report of working group 3: High gradient and laser-structure based acceleration

    Energy Technology Data Exchange (ETDEWEB)

    Solyak, N.; /Fermilab; Cowan, B.M.; /Tech-X, Boulder

    2010-01-01

    The charge for the working group on high gradient and laser-structure based acceleration was to assess the current challenges involved in developing an advanced accelerator based on electromagnetic structures, and survey state-of-the-art methods to address those challenges. The topics of more than 50 presentations in the working group covered a very broad range of issues, from ideas, theoretical models and simulations, to design and manufacturing of accelerating structures and, finally, experimental results on obtaining extremely high accelerating gradients in structures from conventional microwave frequency range up to THz and laser frequencies. Workshop discussion topics included advances in the understanding of the physics of breakdown and other phenomena, limiting high gradient performance of accelerating structures. New results presented in this workshop demonstrated significant progress in the fields of conventional vacuum structure-based acceleration, dielectric wakefield acceleration, and laser-structure acceleration.

  2. Summary Report of Working Group 3: High Gradient and Laser-Structure Based Acceleration

    International Nuclear Information System (INIS)

    The charge for the working group on high gradient and laser-structure based acceleration was to assess the current challenges involved in developing an advanced accelerator based on electromagnetic structures, and survey state-of-the-art methods to address those challenges. The topics of more than 50 presentations in the working group covered a very broad range of issues, from ideas, theoretical models and simulations, to design and manufacturing of accelerating structures and, finally, experimental results on obtaining extremely high accelerating gradients in structures from conventional microwave frequency range up to THz and laser frequencies. Workshop discussion topics included advances in the understanding of the physics of breakdown and other phenomena, limiting high gradient performance of accelerating structures. New results presented in this workshop demonstrated significant progress in the fields of conventional vacuum structure-based acceleration, dielectric wakefield acceleration, and laser-structure acceleration.

  3. Multipactor discharge in a dielectric-loaded accelerating structure

    Science.gov (United States)

    Wu, L.; Ang, L. K.

    2007-01-01

    This paper presents a Monte-Carlo model to explain the multipactor discharge and its high-power absorption in a dielectric-loaded accelerating (DLA) structure reported recently [J. G. Power et al., Phys. Rev. Lett. 92, 164801 (2004)]. Susceptibility diagrams are constructed. Dynamic calculations for beam loading and its power absorption by the multipactor discharge are performed. It is found that the fraction of power absorbed by multipactor discharge at saturation is much larger than the case of a simple rf window, and it is sensitive to the incident power, which confirms the prior experimental results. This enhanced power absorption is due to the fact that the length of a DLA structure is much larger than the radius of the structure. A resonant condition of a maximum growth region has also been determined numerically and analytically. The difference between the resonant condition and saturation (due to beam loading) is clarified.

  4. Numerical studies of multipactor in dielectric-loaded accelerator structures

    Science.gov (United States)

    Sinitsyn, Oleksandr; Nusinovich, Gregory; Antonsen, Thomas

    2009-11-01

    Multipactor (MP) is known as the avalanche growth of the number of secondary electrons emitted from a solid surface exposed to an rf electric field under vacuum conditions. MP may occur in various microwave and rf systems such as microwave tubes, rf windows and launchers, accelerating structures, and rf satellite payloads. In this work we present results of MP analysis in dielectric-loaded accelerator (DLA) structures. The starting point of our work was experimental and theoretical studies of DLA structures jointly done by Argonne National Laboratory and Naval Research Laboratory (J. G. Power et al., Phys. Rev. Lett. 92, 164801 (2004); J. G. Power et al., AIP Conf. Proc. 877, 362 (2006)). In the theoretical model developed during those studies the space-charge field due to the total number of particles is taken into account as a parameter. We perform our studies using a self-consistent approach with the help of time-dependent two-dimensional code developed at the University of Maryland (O. V. Sinitsyn et al., Phys. Plasmas 16, 073102 (2009)). Results include analysis of MP evolution at an early stage, detailed studies of individual electron trajectories, analysis of MP onset time under various conditions and comparison of some results with the experimental data.

  5. Accelerating Dynamic Cardiac MR Imaging Using Structured Sparse Representation

    Directory of Open Access Journals (Sweden)

    Nian Cai

    2013-01-01

    Full Text Available Compressed sensing (CS has produced promising results on dynamic cardiac MR imaging by exploiting the sparsity in image series. In this paper, we propose a new method to improve the CS reconstruction for dynamic cardiac MRI based on the theory of structured sparse representation. The proposed method user the PCA subdictionaries for adaptive sparse representation and suppresses the sparse coding noise to obtain good reconstructions. An accelerated iterative shrinkage algorithm is used to solve the optimization problem and achieve a fast convergence rate. Experimental results demonstrate that the proposed method improves the reconstruction quality of dynamic cardiac cine MRI over the state-of-the-art CS method.

  6. Macromolecularly crowded in vitro microenvironments accelerate the production of extracellular matrix-rich supramolecular assemblies

    OpenAIRE

    Kumar, Pramod; Satyam, Abhigyan; Fan, Xingliang; Rodriguez, Brian J.; et al

    2015-01-01

    Therapeutic strategies based on the principles of tissue engineering by self-assembly put forward the notion that functional regeneration can be achieved by utilising the inherent capacity of cells to create highly sophisticated supramolecular assemblies. However, in dilute ex vivo microenvironments, prolonged culture time is required to develop an extracellular matrix-rich implantable device. Herein, we assessed the influence of macromolecular crowding, a biophysical phenomenon that regulate...

  7. Failure Engineering Study and Accelerated Stress Test Results for the Mars Global Surveyor Spacecraft's Power Shunt Assemblies

    Science.gov (United States)

    Gibbel, Mark; Larson, Timothy

    2000-01-01

    An Engineering-of-Failure approach to designing and executing an accelerated product qualification test was performed to support a risk assessment of a "work-around" necessitated by an on-orbit failure of another piece of hardware on the Mars Global Surveyor spacecraft. The proposed work-around involved exceeding the previous qualification experience both in terms of extreme cold exposure level and in terms of demonstrated low cycle fatigue life for the power shunt assemblies. An analysis was performed to identify potential failure sites, modes and associated failure mechanisms consistent with the new use conditions. A test was then designed and executed which accelerated the failure mechanisms identified by analysis. Verification of the resulting failure mechanism concluded the effort.

  8. Emergence of Slow-Switching Assemblies in Structured Neuronal Networks.

    Science.gov (United States)

    Schaub, Michael T; Billeh, Yazan N; Anastassiou, Costas A; Koch, Christof; Barahona, Mauricio

    2015-07-01

    Unraveling the interplay between connectivity and spatio-temporal dynamics in neuronal networks is a key step to advance our understanding of neuronal information processing. Here we investigate how particular features of network connectivity underpin the propensity of neural networks to generate slow-switching assembly (SSA) dynamics, i.e., sustained epochs of increased firing within assemblies of neurons which transition slowly between different assemblies throughout the network. We show that the emergence of SSA activity is linked to spectral properties of the asymmetric synaptic weight matrix. In particular, the leading eigenvalues that dictate the slow dynamics exhibit a gap with respect to the bulk of the spectrum, and the associated Schur vectors exhibit a measure of block-localization on groups of neurons, thus resulting in coherent dynamical activity on those groups. Through simple rate models, we gain analytical understanding of the origin and importance of the spectral gap, and use these insights to develop new network topologies with alternative connectivity paradigms which also display SSA activity. Specifically, SSA dynamics involving excitatory and inhibitory neurons can be achieved by modifying the connectivity patterns between both types of neurons. We also show that SSA activity can occur at multiple timescales reflecting a hierarchy in the connectivity, and demonstrate the emergence of SSA in small-world like networks. Our work provides a step towards understanding how network structure (uncovered through advancements in neuroanatomy and connectomics) can impact on spatio-temporal neural activity and constrain the resulting dynamics.

  9. Emergence of Slow-Switching Assemblies in Structured Neuronal Networks.

    Directory of Open Access Journals (Sweden)

    Michael T Schaub

    2015-07-01

    Full Text Available Unraveling the interplay between connectivity and spatio-temporal dynamics in neuronal networks is a key step to advance our understanding of neuronal information processing. Here we investigate how particular features of network connectivity underpin the propensity of neural networks to generate slow-switching assembly (SSA dynamics, i.e., sustained epochs of increased firing within assemblies of neurons which transition slowly between different assemblies throughout the network. We show that the emergence of SSA activity is linked to spectral properties of the asymmetric synaptic weight matrix. In particular, the leading eigenvalues that dictate the slow dynamics exhibit a gap with respect to the bulk of the spectrum, and the associated Schur vectors exhibit a measure of block-localization on groups of neurons, thus resulting in coherent dynamical activity on those groups. Through simple rate models, we gain analytical understanding of the origin and importance of the spectral gap, and use these insights to develop new network topologies with alternative connectivity paradigms which also display SSA activity. Specifically, SSA dynamics involving excitatory and inhibitory neurons can be achieved by modifying the connectivity patterns between both types of neurons. We also show that SSA activity can occur at multiple timescales reflecting a hierarchy in the connectivity, and demonstrate the emergence of SSA in small-world like networks. Our work provides a step towards understanding how network structure (uncovered through advancements in neuroanatomy and connectomics can impact on spatio-temporal neural activity and constrain the resulting dynamics.

  10. The Research of a Novel SW Accelerating Structure with Small Beam Spot

    CERN Document Server

    Yang, X; Chen, Y; Jin, X; Li, Maozhen; Lü, H; Xu, Z

    2004-01-01

    A new kind of on-axis coupled biperiodic standing-wave (SW) accelerating structure has been built for a 9 MeV accelerator. The research progress was introduced in this paper, it includes the choice of the accelerating structure, the analysis of electron beam dynamics, the tuning of the cavity, the measurement of the accelerating tube and the powered test. The small beam spot is the most interesting feature of this accelerating structure, the diameter of the beam spot is 1.4 mm. This accelerator has been used for the x photons generation and the x-ray dose rate is about 3400 rad/min/m.

  11. Studying Radiation Damage in Structural Materials by Using Ion Accelerators

    Science.gov (United States)

    Hosemann, Peter

    2011-02-01

    Radiation damage in structural materials is of major concern and a limiting factor for a wide range of engineering and scientific applications, including nuclear power production, medical applications, or components for scientific radiation sources. The usefulness of these applications is largely limited by the damage a material can sustain in the extreme environments of radiation, temperature, stress, and fatigue, over long periods of time. Although a wide range of materials has been extensively studied in nuclear reactors and neutron spallation sources since the beginning of the nuclear age, ion beam irradiations using particle accelerators are a more cost-effective alternative to study radiation damage in materials in a rather short period of time, allowing researchers to gain fundamental insights into the damage processes and to estimate the property changes due to irradiation. However, the comparison of results gained from ion beam irradiation, large-scale neutron irradiation, and a variety of experimental setups is not straightforward, and several effects have to be taken into account. It is the intention of this article to introduce the reader to the basic phenomena taking place and to point out the differences between classic reactor irradiations and ion irradiations. It will also provide an assessment of how accelerator-based ion beam irradiation is used today to gain insight into the damage in structural materials for large-scale engineering applications.

  12. Mesoscopic structure prediction of nanoparticle assembly and coassembly: Theoretical foundation

    KAUST Repository

    Hur, Kahyun

    2010-01-01

    In this work, we present a theoretical framework that unifies polymer field theory and density functional theory in order to efficiently predict ordered nanostructure formation of systems having considerable complexity in terms of molecular structures and interactions. We validate our approach by comparing its predictions with previous simulation results for model systems. We illustrate the flexibility of our approach by applying it to hybrid systems composed of block copolymers and ligand coated nanoparticles. We expect that our approach will enable the treatment of multicomponent self-assembly with a level of molecular complexity that approaches experimental systems. © 2010 American Institute of Physics.

  13. Sequence Planning for On-Orbit Assembly of Large Space Truss Structures in a Multirobot Environment

    Institute of Scientific and Technical Information of China (English)

    GUO Jifeng; WANG Ping; CUI Naigang

    2006-01-01

    An approach to sequence planning for on-orbit assembly of large space truss structures in a multirobot environment is presented. A hierarchical representation of large space truss structures at the structural volume element level and strut level is adopted. The representation of connectivity matrix and directed graph is respectively presented at the strut level and SVE level. The multirobot environment that consists of autonomous space robots and struts is supposed. Then the multirobot serial assembly strategy, assembly states, assembly tasks and assembly sequences are described. The assembly sequence planning algorithms at the strut level and SVE level are respectively discussed. The results of the simulations show that this approach is feasible and efficient. Two extensions of this approach include more accurate assessment of the efficiency representation and improvements in planning algorithm. In the future, the assembly sequence planning of more large space truss structures and complex multirobot environments and assembly tasks will be considered.

  14. The Structural Basis of Ribozyme-Catalyzed RNA Assembly

    Energy Technology Data Exchange (ETDEWEB)

    Robertson, M.P.; Scott, W.G.; /UC, Santa Cruz

    2007-07-12

    Life originated, according to the RNA World hypothesis, from self-replicating ribozymes that catalyzed ligation of RNA fragments. We have solved the 2.6 angstrom crystal structure of a ligase ribozyme that catalyzes regiospecific formation of a 5' to 3' phosphodiester bond between the 5'-triphosphate and the 3'-hydroxyl termini of two RNA fragments. Invariant residues form tertiary contacts that stabilize a flexible stem of the ribozyme at the ligation site, where an essential magnesium ion coordinates three phosphates. The structure of the active site permits us to suggest how transition-state stabilization and a general base may catalyze the ligation reaction required for prebiotic RNA assembly.

  15. RF-thermal-structural-RF coupled analysis on a travelling wave disk-loaded accelerating structure

    International Nuclear Information System (INIS)

    The travelling wave (TW) disk-loaded accelerating structure is one of the key components in normal conducting (NC) linear accelerators, and has been studied for many years. In the design process, usually after the dimensions of each cell and the two couplers are finalized, the structure is fabricated and tuned, and then the whole structure RF characteristics are measured by using a vector network analyzer. Before fabrication, the whole structure characteristics (including RF, thermal and structural ones) are less simulated due to the limited capability of currently available computers. In this paper, we described a method for performing RF-thermal-structural-RF coupled analysis on a TW disk-loaded structure using only one PC. In order to validate our method, we first analyzed and compared our RF simulation results on the 3 m long BEPC Ⅱ structure with the corresponding experimental results, which shows very good consistency. Finally, the RF-thermal-structure-RF coupled analysis results on the 1.35 m long NSC KIPT linac accelerating structure are presented. (authors)

  16. Heating of Micro-protrusions in Accelerating Structures

    CERN Document Server

    Keser, A C; Nusinovich, G S; Kashyn, D G; Jensen, K L

    2013-01-01

    The thermal and field emission of electrons from protrusions on metal surfaces is a possible limiting factor on the performance and operation of high-gradient room temperature accelerator structures. We present here the results of extensive numerical simulations of electrical and thermal behavior of protrusions. We unify the thermal and field emission in the same numerical framework, describe bounds for the emission current and geometric enhancement, then we calculate the Nottingham and Joule heating terms and solve the heat equation to characterize the thermal evolution of emitters under RF electric field. Our findings suggest that, heating is entirely due to the Nottingham effect, that thermal runaway scenarios are not likely, and that high RF frequency causes smaller swings in temperature and cooler tips. We build a phenomenological model to account for the effect of space charge and show that space charge eliminates the possibility of tip melting, although near melting temperatures reached.

  17. Origami tubes assembled into stiff, yet reconfigurable structures and metamaterials

    Science.gov (United States)

    Filipov, Evgueni T.; Tachi, Tomohiro; Paulino, Glaucio H.

    2015-10-01

    Thin sheets have long been known to experience an increase in stiffness when they are bent, buckled, or assembled into smaller interlocking structures. We introduce a unique orientation for coupling rigidly foldable origami tubes in a "zipper" fashion that substantially increases the system stiffness and permits only one flexible deformation mode through which the structure can deploy. The flexible deployment of the tubular structures is permitted by localized bending of the origami along prescribed fold lines. All other deformation modes, such as global bending and twisting of the structural system, are substantially stiffer because the tubular assemblages are overconstrained and the thin sheets become engaged in tension and compression. The zipper-coupled tubes yield an unusually large eigenvalue bandgap that represents the unique difference in stiffness between deformation modes. Furthermore, we couple compatible origami tubes into a variety of cellular assemblages that can enhance mechanical characteristics and geometric versatility, leading to a potential design paradigm for structures and metamaterials that can be deployed, stiffened, and tuned. The enhanced mechanical properties, versatility, and adaptivity of these thin sheet systems can provide practical solutions of varying geometric scales in science and engineering.

  18. Origami tubes assembled into stiff, yet reconfigurable structures and metamaterials.

    Science.gov (United States)

    Filipov, Evgueni T; Tachi, Tomohiro; Paulino, Glaucio H

    2015-10-01

    Thin sheets have long been known to experience an increase in stiffness when they are bent, buckled, or assembled into smaller interlocking structures. We introduce a unique orientation for coupling rigidly foldable origami tubes in a "zipper" fashion that substantially increases the system stiffness and permits only one flexible deformation mode through which the structure can deploy. The flexible deployment of the tubular structures is permitted by localized bending of the origami along prescribed fold lines. All other deformation modes, such as global bending and twisting of the structural system, are substantially stiffer because the tubular assemblages are overconstrained and the thin sheets become engaged in tension and compression. The zipper-coupled tubes yield an unusually large eigenvalue bandgap that represents the unique difference in stiffness between deformation modes. Furthermore, we couple compatible origami tubes into a variety of cellular assemblages that can enhance mechanical characteristics and geometric versatility, leading to a potential design paradigm for structures and metamaterials that can be deployed, stiffened, and tuned. The enhanced mechanical properties, versatility, and adaptivity of these thin sheet systems can provide practical solutions of varying geometric scales in science and engineering.

  19. Structural Mechanisms in NLR Inflammasome Assembly and Signaling.

    Science.gov (United States)

    Hu, Zehan; Chai, Jijie

    2016-01-01

    Inflammasomes are multimeric protein complexes that mediate the activation of inflammatory caspases. One central component of inflammasomes is nucleotide-binding domain (NBD)- and leucine-rich repeat (LRR)-containing proteins (NLRs) that can function as pattern recognition receptors (PRRs). In resting cells, NLR proteins exist in an auto-inhibited, monomeric, and ADP-bound state. Perception of microbial or damage-associated signals results in NLR oligomerization, thus recruiting inflammatory caspases directly or through the adaptor molecule apoptosis-associated speck-like protein containing a caspase recruitment domain (ASC). The assembled NLR inflammasomes serve as dedicated machinery to facilitate the activation of the inflammatory caspases. Here, we review current understanding of the structures of NLR inflammasomes with an emphasis on the molecular mechanisms of their assembly and activation. We also discuss implications of the self-propagation model derived from the NAIP-NLRC4 inflammasomes for the activation of other NLR inflammasomes and a potential role of the C-terminal LRR domain in the activation of an NLR protein. PMID:27460803

  20. The assembly and structure of self-assembling peptides: molecular to supramolecular

    OpenAIRE

    Morris, Kyle

    2012-01-01

    Self-assembling molecules are central to a plethora of processes found in nature, biotechnology and even disease. The importance of the non-covalent interaction of monomers to the formation of fibrillar assemblies is evident in the repeated use of this mechanism throughout nature, from essential cellular processes such as the formation of the cytoskeleton to the production of silk. Further, it has been recognised in the last two decades that a self-assembly mechanism, that is t...

  1. DNA/Fusogenic Lipid Nanocarrier Assembly: Millisecond Structural Dynamics.

    Science.gov (United States)

    Angelov, Borislav; Angelova, Angelina; Filippov, Sergey K; Narayanan, Theyencheri; Drechsler, Markus; Štěpánek, Petr; Couvreur, Patrick; Lesieur, Sylviane

    2013-06-01

    Structural changes occurring on a millisecond time scale during uptake of DNA by cationic lipid nanocarriers are monitored by time-resolved small-angle X-ray scattering (SAXS) coupled to a rapid-mixing stopped-flow technique. Nanoparticles (NPs) of nanochannel organization are formed by PEGylation, hydration, and dispersion of a lipid film of the fusogenic lipid monoolein in a mixture with positively charged (DOMA) and PEGylated (DOPE-PEG2000) amphiphiles and are characterized by the inner cubic structure of very large nanochannels favorable for DNA upload. Ultrafast structural dynamics of complexation and assembly of these cubosome particles with neurotrophic plasmid DNA (pDNA) is revealed thanks to the high brightness of the employed synchrotron X-ray beam. The rate constant of the pDNA/lipid NP complexation is estimated from dynamic roentgenograms recorded at 4 ms time resolution. pDNA upload into the vastly hydrated channels of the cubosome carriers leads to a fast nanoparticle-nanoparticle structural transition and lipoplex formation involving tightly packed pDNA. PMID:26283134

  2. Synthetic melanin films: Assembling mechanisms, scaling behavior, and structural properties

    Science.gov (United States)

    Lorite, Gabriela S.; Coluci, Vitor R.; da Silva, Maria Ivonete N.; Dezidério, Shirlei N.; Graeff, Carlos Frederico O.; Galva~O, Douglas S.; Cotta, Mônica A.

    2006-06-01

    In this work we report on the surface characterization of melanin thin films prepared using both water-based and organic solvent-based melanin syntheses. Atomic force microscopy (AFM) analysis of these films suggests that the organic solvent synthesis provides relatively planar basic melanin structures; these basic structures generate surface steps with height in the range of 2-3 nm and small tendency to form larger aggregates. The scaling properties obtained from the AFM data were used to infer the assembling mechanisms of these thin films which depend on the solvent used for melanin synthesis. The behavior observed in organic solvent-based melanin suggests a diffusion-limited aggregation process. Thus films with good adhesion to the substrate and smoother morphologies than water-prepared melanin films are obtained. Electronic structure calculations using a conductorlike screening model were also performed in order to elucidate the microscopic processes of thin film formation. Our results suggest that the agglomerates observed in hydrated samples originate from reaction with water at specific locations on the surface most likely defects on the planar structure.

  3. Self-assembled hierarchically structured organic-inorganic composite systems.

    Science.gov (United States)

    Tritschler, Ulrich; Cölfen, Helmut

    2016-06-01

    Designing bio-inspired, multifunctional organic-inorganic composite materials is one of the most popular current research objectives. Due to the high complexity of biocomposite structures found in nacre and bone, for example, a one-pot scalable and versatile synthesis approach addressing structural key features of biominerals and affording bio-inspired, multifunctional organic-inorganic composites with advanced physical properties is highly challenging. This article reviews recent progress in synthesizing organic-inorganic composite materials via various self-assembly techniques and in this context highlights a recently developed bio-inspired synthesis concept for the fabrication of hierarchically structured, organic-inorganic composite materials. This one-step self-organization concept based on simultaneous liquid crystal formation of anisotropic inorganic nanoparticles and a functional liquid crystalline polymer turned out to be simple, fast, scalable and versatile, leading to various (multi-)functional composite materials, which exhibit hierarchical structuring over several length scales. Consequently, this synthesis approach is relevant for further progress and scientific breakthrough in the research field of bio-inspired and biomimetic materials. PMID:27175790

  4. Assembly and structure of protein phosphatase 2A

    Institute of Scientific and Technical Information of China (English)

    SHI YiGong

    2009-01-01

    Protein phosphatase 2A (PP2A) represents a conserved family of important protein serinetthreonine phosphatases in species ranging from yeast to human. The PP2A core enzyme comprises a scaffold subunit and a catalytic subunit. The heterotrimeric PP2A holoenzyme consists of the core enzyme and a variable regulatory subunit. The catalytic subunit of PP2A is subject to reversible methylation, mediated by two conserved enzymes. Both the PP2A core and holoenzymes are regulated through interaction with a large number of cellular cofactors. Recent biochemical and structural investigation reveals critical insights into the assembly and function of the PP2A core enzyme as well as two families of holoenzyme. This review focuses on the molecular mechanisms revealed by these latest advances.

  5. Assembly and structure of protein phosphatase 2A

    Institute of Scientific and Technical Information of China (English)

    2009-01-01

    Protein phosphatase 2A (PP2A) represents a conserved family of important protein serine/threonine phosphatases in species ranging from yeast to human. The PP2A core enzyme comprises a scaffold subunit and a catalytic subunit. The heterotrimeric PP2A holoenzyme consists of the core enzyme and a variable regulatory subunit. The catalytic subunit of PP2A is subject to reversible methylation, medi-ated by two conserved enzymes. Both the PP2A core and holoenzymes are regulated through interac-tion with a large number of cellular cofactors. Recent biochemical and structural investigation reveals critical insights into the assembly and function of the PP2A core enzyme as well as two families of holoenzyme. This review focuses on the molecular mechanisms revealed by these latest advances.

  6. Printable semiconductor structures and related methods of making and assembling

    Science.gov (United States)

    Nuzzo, Ralph G.; Rogers, John A.; Menard, Etienne; Lee, Keon Jae; Khang; , Dahl-Young; Sun, Yugang; Meitl, Matthew; Zhu, Zhengtao; Ko, Heung Cho; Mack, Shawn

    2013-03-12

    The present invention provides a high yield pathway for the fabrication, transfer and assembly of high quality printable semiconductor elements having selected physical dimensions, shapes, compositions and spatial orientations. The compositions and methods of the present invention provide high precision registered transfer and integration of arrays of microsized and/or nanosized semiconductor structures onto substrates, including large area substrates and/or flexible substrates. In addition, the present invention provides methods of making printable semiconductor elements from low cost bulk materials, such as bulk silicon wafers, and smart-materials processing strategies that enable a versatile and commercially attractive printing-based fabrication platform for making a broad range of functional semiconductor devices.

  7. PARTICLE ACCELERATION IN PLASMOID EJECTIONS DERIVED FROM RADIO DRIFTING PULSATING STRUCTURES

    Energy Technology Data Exchange (ETDEWEB)

    Nishizuka, N. [National Institute of Information and Communications Technology, 4-2-1, Nukui-Kitamachi, Koganei, Tokyo 184-8795 (Japan); Karlický, M.; Bárta, M. [Astronomical Institute of the Academy of Sciences of the Czech Republic, 25165 Ondřejov (Czech Republic); Janvier, M., E-mail: nishizuka.naoto@nict.go.jp [Department of Mathematics, University of Dundee, Dundee DD1 4HN (United Kingdom)

    2015-02-01

    We report observations of slowly drifting pulsating structures (DPSs) in the 0.8-4.5 GHz frequency range of the RT4 and RT5 radio spectrographs at Ondřejov Observatory, between 2002 and 2012. We found 106 events of DPSs, which we classified into four cases: (I) single events with a constant frequency drift (12 events), (II) multiple events occurring in the same flare with constant frequency drifts (11 events), (III) single or multiple events with increasing or decreasing frequency drift rates (52 events), and (IV) complex events containing multiple events occurring at the same time in a different frequency range (31 events). Many DPSs are associated with hard X-ray (HXR) bursts (15-25 keV) and soft X-ray (SXR) gradient peaks, as they typically occurred at the beginning of HXR peaks. This indicates that DPS events are related to the processes of fast energy release and particle acceleration. Furthermore, interpreting DPSs as signatures of plasmoids, we measured their ejection velocity, their width, and their height from the DPS spectra, from which we also estimated the reconnection rate and the plasma beta. In this interpretation, constant frequency drift indicates a constant velocity of a plasmoid, and an increasing/decreasing frequency drift indicates a deceleration/acceleration of a plasmoid ejection. The reconnection rate shows a good positive correlation with the plasmoid velocity. Finally we confirmed that some DPS events show plasmoid counterparts in Solar Dynamics Observatory/Atmospheric Imaging Assembly images.

  8. Lipid self-assembled structures for reactivity control in food.

    Science.gov (United States)

    Sagalowicz, L; Moccand, C; Davidek, T; Ghanbari, R; Martiel, I; Negrini, R; Mezzenga, R; Leser, M E; Blank, I; Michel, M

    2016-07-28

    Lipid self-assembled structures (SASs) have recently gained considerable interest for their potential applications, especially for sustained nutrient release and protein crystallization. An additional property, which is underexploited, is their ability to control chemical reactions in food products. Here, we concentrate on SASs formed by phospholipids (PLs) and monoglycerides (MGs), those compounds being the most natural surfactants and therefore, the best compatible with food products, in view of providing new functionalities through the formation of SASs. In this work, the phase behaviour of these amphiphiles when mixed with oil and water is described and compared. Subsequently, we address the influence of these structures to the oxidation and Maillard-type reactions. Finally, we show that SASs formed by MGs can strongly increase the yield of key aroma impact compounds generated by Maillard-type reactions when compared with the reaction performed in aqueous precursor solutions. Various SASs are compared. In particular, addition of oil to a reversed bicontinuous structure formed by MG leads to a reversed microemulsion, which, considering its low viscosity, is particularly suitable for food products and act as a very efficient reactor system. The influence of oil and precursors on phase behaviour is discussed and related to the efficiency of the Maillard reactions.This article is part of the themed issue 'Soft interfacial materials: from fundamentals to formulation'. PMID:27298441

  9. Structure and Order of Phosphonic Acid-Based Self-Assembled Based Self-Assembled

    Energy Technology Data Exchange (ETDEWEB)

    Dubey, M.; Weidner, T; Gamble, L; Castner, D

    2010-01-01

    Organophosphonic acid self-assembled monolayers (SAMs) on oxide surfaces have recently seen increased use in electrical and biological sensor applications. The reliability and reproducibility of these sensors require good molecular organization in these SAMs. In this regard, packing, order, and alignment in the SAMs is important, as it influences the electron transport measurements. In this study, we examine the order of hydroxyl- and methyl-terminated phosphonate films deposited onto silicon oxide surfaces by the tethering by aggregation and growth method using complementary, state-of-art surface characterization tools. Near-edge X-ray absorption fine structure (NEXAFS) spectroscopy and in situ sum frequency generation (SFG) spectroscopy are used to study the order of the phosphonate SAMs in vacuum and under aqueous conditions, respectively. X-ray photoelectron spectroscopy and time-of-flight secondary ion mass spectrometry results show that these samples form chemically intact monolayer phosphonate films. NEXAFS and SFG spectroscopy showed that molecular order exists in the octadecylphosphonic acid and 11-hydroxyundecylphosphonic acid SAMs. The chain tilt angles in these SAMs were approximately 37{sup o} and 45{sup o}, respectively.

  10. A Lot of Work or a Work of Art: How the Structure of a Customized Assembly Task Determines the Utility Derived from Assembly Effort

    OpenAIRE

    Eva C. Buechel; Chris Janiszewski

    2014-01-01

    Customized assembly occurs when a consumer makes customization decisions and participates in the construction or modification of a product. While customization increases satisfaction with the end-product, less is known about the utility derived from the assembly effort. Three studies show that the structure of the customized assembly task determines whether consumers derive negative or positive utility from the assembly effort. When customization decisions and assembly processes are segregate...

  11. Cell wall assembly and intracellular trafficking in plant cells are directly affected by changes in the magnitude of gravitational acceleration.

    Directory of Open Access Journals (Sweden)

    Youssef Chebli

    Full Text Available Plants are able to sense the magnitude and direction of gravity. This capacity is thought to reside in selected cell types within the plant body that are equipped with specialized organelles called statoliths. However, most plant cells do not possess statoliths, yet they respond to changes in gravitational acceleration. To understand the effect of gravity on the metabolism and cellular functioning of non-specialized plant cells, we investigated a rapidly growing plant cell devoid of known statoliths and without gravitropic behavior, the pollen tube. The effects of hyper-gravity and omnidirectional exposure to gravity on intracellular trafficking and on cell wall assembly were assessed in Camellia pollen tubes, a model system with highly reproducible growth behavior in vitro. Using an epi-fluorescence microscope mounted on the Large Diameter Centrifuge at the European Space Agency, we were able to demonstrate that vesicular trafficking is reduced under hyper-gravity conditions. Immuno-cytochemistry confirmed that both in hyper and omnidirectional gravity conditions, the characteristic spatial profiles of cellulose and callose distribution in the pollen tube wall were altered, in accordance with a dose-dependent effect on pollen tube diameter. Our findings suggest that in response to gravity induced stress, the pollen tube responds by modifying cell wall assembly to compensate for the altered mechanical load. The effect was reversible within few minutes demonstrating that the pollen tube is able to quickly adapt to changing stress conditions.

  12. Experimental Studies Of W-band Accelerator Structures At High Field

    CERN Document Server

    Hill, M E

    2001-01-01

    A high-gradient electron accelerator is desired for high- energy physics research, where frequency scalings of breakdown and trapping of itinerant beamline particles dictates operation of the accelerator at short wavelengths. The first results of design and test of a high-gradient mm-wave linac with an operating frequency at 91.392 GHz (W-band) are presented. A novel approach to particle acceleration is presented employing a planar, dielectric lined waveguide used for particle acceleration. The traveling wave fields in the planar dielectric accelerator (PDA) are analyzed for an idealized structure, along with a circuit equivalent model used for understanding the structure as a microwave circuit. Along with the W-band accelerator structures, other components designed and tested are high power rf windows, high power attenuators, and a high power squeeze-type phase shifter. The design of the accelerator and its components where eased with the aide of numerical simulations using a finite-difference electromagneti...

  13. Design study of double-layer beam trajectory accelerator based on the Rhodotron structure

    Science.gov (United States)

    Jabbari, Iraj; Poursaleh, Ali Mohammad; Khalafi, Hossein

    2016-08-01

    In this paper, the conceptual design of a new structure of industrial electron accelerator based on the Rhodotron accelerator is presented and its properties are compared with those of Rhodotron-TT200 accelerator. The main goal of this study was to reduce the power of RF system of accelerator at the same output electron beam energy. The main difference between the new accelerator structure with the Rhodotron accelerator is the length of the coaxial cavity that is equal to the wavelength at the resonant frequency. Also two sets of bending magnets were used around the acceleration cavity in two layers. In the new structure, the beam crosses several times in the coaxial cavity by the bending magnets around the cavity at the first layer and then is transferred to the second layer using the central bending magnet. The acceleration process in the second layer is similar to the first layer. Hence, the energy of the electron beam will be doubled. The electrical power consumption of the RF system and magnet system were calculated and simulated for the new accelerator structure and TT200. Comparing the calculated and simulated results of the TT200 with those of experimental results revealed good agreement. The results showed that the overall electrical power consumption of the new accelerator structure was less than that of the TT200 at the same energy and power of the electron beam. As such, the electrical efficiency of the new structure was improved.

  14. Structural mechanisms of DREAM complex assembly and regulation.

    Science.gov (United States)

    Guiley, Keelan Z; Liban, Tyler J; Felthousen, Jessica G; Ramanan, Parameshwaran; Litovchick, Larisa; Rubin, Seth M

    2015-05-01

    The DREAM complex represses cell cycle genes during quiescence through scaffolding MuvB proteins with E2F4/5 and the Rb tumor suppressor paralog p107 or p130. Upon cell cycle entry, MuvB dissociates from p107/p130 and recruits B-Myb and FoxM1 for up-regulating mitotic gene expression. To understand the biochemical mechanisms underpinning DREAM function and regulation, we investigated the structural basis for DREAM assembly. We identified a sequence in the MuvB component LIN52 that binds directly to the pocket domains of p107 and p130 when phosphorylated on the DYRK1A kinase site S28. A crystal structure of the LIN52-p107 complex reveals that LIN52 uses a suboptimal LxSxExL sequence together with the phosphate at nearby S28 to bind the LxCxE cleft of the pocket domain with high affinity. The structure explains the specificity for p107/p130 over Rb in the DREAM complex and how the complex is disrupted by viral oncoproteins. Based on insights from the structure, we addressed how DREAM is disassembled upon cell cycle entry. We found that p130 and B-Myb can both bind the core MuvB complex simultaneously but that cyclin-dependent kinase phosphorylation of p130 weakens its association. Together, our data inform a novel target interface for studying MuvB and p130 function and the design of inhibitors that prevent tumor escape in quiescence. PMID:25917549

  15. Horizon structure of rotating Bardeen black hole and particle acceleration

    International Nuclear Information System (INIS)

    We investigate the horizon structure and ergosphere in a rotating Bardeen regular black hole, which has an additional parameter (g) due to the magnetic charge, apart from the mass (M) and the rotation parameter (a). Interestingly, for each value of the parameter g, there exists a critical rotation parameter (a = aE), which corresponds to an extremal black hole with degenerate horizons, while for a < aE it describes a non-extremal black hole with two horizons, and no black hole for a > aE. We find that the extremal value aE is also influenced by the parameter g, and so is the ergosphere. While the value of aE remarkably decreases when compared with the Kerr black hole, the ergosphere becomes thicker with the increase in g.We also study the collision of two equal mass particles near the horizon of this black hole, and explicitly show the effect of the parameter g. The center-of-mass energy (ECM) not only depend on the rotation parameter a, but also on the parameter g. It is demonstrated that the ECM could be arbitrarily high in the extremal cases when one of the colliding particles has a critical angular momentum, thereby suggesting that the rotating Bardeen regular black hole can act as a particle accelerator. (orig.)

  16. Development of High-Gradient Dielectric Laser-Driven Particle Accelerator Structures

    Energy Technology Data Exchange (ETDEWEB)

    Byer, Robert L.

    2013-11-07

    The thrust of Stanford's program is to conduct research on high-gradient dielectric accelerator structures driven with high repetition-rate, tabletop infrared lasers. The close collaboration between Stanford and SLAC (Stanford Linear Accelerator Center) is critical to the success of this project, because it provides a unique environment where prototype dielectric accelerator structures can be rapidly fabricated and tested with a relativistic electron beam.

  17. X-band Dielectric Loaded Rf Driven Accelerator Structures Theoretical And Experimental Investigations

    CERN Document Server

    Zou, P

    2001-01-01

    An important area of application of high-power radio frequency (RF) and microwave sources is particle acceleration. A major challenge for the current worldwide research and development effort in linear accelerator is the search for a compact and affordable very-high-energy accelerator technology for the next generation supercolliders. It has been recognized for sometime that dielectric loaded accelerator structures are attractive candidates for the next generation very-high-energy linear accelerators, because they possess several distinct advantages over conventional metallic iris- loaded accelerator structures. However, some fundamental issues, such as RF breakdown in the dielectric, Joule heating, and vacuum properties of dielectric materials, are still the subjects of intense investigation, requiring the validation by experiments conducted at high power levels. An X-band traveling-wave accelerator based on dielectric-lined waveguide has been designed and constructed. Numerical calculation, bench measuremen...

  18. Hierarchical assembly may be a way to make large information-rich structures

    CERN Document Server

    Whitelam, Stephen

    2015-01-01

    Self-assembly in the laboratory can now yield `information-rich' nanostructures in which each component is of a distinct type and has a defined spatial position. Ensuring the thermodynamic stability of such structures requires inter-component interaction energies to increase logarithmically with structure size, in order to counter the entropy gained upon mixing component types in solution. However, self-assembly in the presence of strong interactions results in general in kinetic trapping, so suggesting a limit to the size of an (equilibrium) structure that can be self-assembled from distinguishable components. Here we study numerically a two-dimensional hierarchical assembly scheme already considered in experiment. We show that this scheme is immune to the kinetic traps associated with strong `native' interactions (interactions designed to stabilize the intended structure), and so, in principle, offers a way to make large information-rich structures. In this scheme the size of an assembled structure scales e...

  19. The structure of heart rate asymmetry: deceleration and acceleration runs

    International Nuclear Information System (INIS)

    A family of new heart rate asymmetry measures is introduced, namely deceleration and acceleration runs, as well as entropic measures summarizing their distribution. We introduce the theoretical run distribution for shuffled data and use it as a reference for interpreting the results. The measures defined in the paper are applied to actual 24 h Holter ECG recordings from 87 healthy people, and it is demonstrated that the patterns of accelerations are different from those of decelerations. Acceleration runs are longer and more numerous: all runs of accelerations, with the exception of lengths 3 and 4, are more numerous than those of decelerations. These findings are reflected in the difference between the entropic measures for acceleration and deceleration runs: for 74 subjects the acceleration-related entropic parameter is greater than that of decelerations (p < 0.001). For shuffled data there is no difference in the above parameters, and there are more short runs and fewer long runs than in physiological data. The influence of the measuring equipment resolution is also discussed

  20. Assembly, Structure and Properties of DNA Programmable Nanoclusters

    Science.gov (United States)

    Chi, Cheng

    Finite size nanoclusters can be viewed as a nanoscale analogue of molecules. Just as molecules, synthesized from atoms, give access to new properties, clusters composed of nanoparticles modulate of their functional properties of nanoparticles. In contrast to synthetic chemistry which is a mature field, the creation of nanoscale clusters with well-defined architectures is a new and challenging area of research. My work explores how to assemble model systems of nanoclusters using DNA-programmable interparticle linkages. The simplest clusters of two particles, dimers, allow one to investigate fundamental effects in these systems. Such clusters serve as a versatile platform to understand DNA-mediated interactions, especially in the non-trivial regime where the nanoparticle and DNA chains are comparable in size. I systematically studied a few fundamental questions as follows: Firstly, we examined the structure of nanoparticle dimers in detail by a combination of X-ray scattering experiments and molecular simulations. We found that, for a given DNA length, the interparticle separation within the dimer is controlled primarily by the number of linking DNA. We summarized our findings in a simple model that captures the interplay of the number of DNA bridges, their length, the particle's curvature and the excluded volume effects. We demonstrated the applicability of the model to our results, without any free parameters. As a consequence, the increase of dimer separation with increasing temperature can be understood as a result of changing the number of connecting DNA. Later, we investigated the self-assembly process of DNA-functionalized particles in the presence of various lengths of the DNA linkage strands using 3 different pathways. We observed a high yield of dimer formation when significantly long linkers were applied. Small Angle X-ray Scattering revealed two configurations of the small clusters by different pathways. In one case, the interparticle distance increases

  1. X-band dielectric loaded RF driven accelerator structures: Theoretical and experimental investigations

    Science.gov (United States)

    Zou, Peng

    An important area of application of high-power radio frequency (RF) and microwave sources is particle acceleration. A major challenge for the current worldwide research and development effort in linear accelerator is the search for a compact and affordable very-high-energy accelerator technology for the next generation supercolliders. It has been recognized for sometime that dielectric loaded accelerator structures are attractive candidates for the next generation very-high-energy linear accelerators, because they possess several distinct advantages over conventional metallic iris- loaded accelerator structures. However, some fundamental issues, such as RF breakdown in the dielectric, Joule heating, and vacuum properties of dielectric materials, are still the subjects of intense investigation, requiring the validation by experiments conducted at high power levels. An X-band traveling-wave accelerator based on dielectric-lined waveguide has been designed and constructed. Numerical calculation, bench measurements, and 3-D electromagnetic field simulation of this dielectric loaded accelerator are presented. One critical technical problem in constructing such dielectric loaded accelerator is efficient coupling of RF power into the dielectric-lined circular waveguide. A coupling scheme has been arrived at by empirical methods. Field distribution in this coupling configuration has been studied by numerical simulation. In the conventional iris-loaded accelerator structures, the peak surface electric field E s is in general found to be at least a factor of 2 higher than the axial acceleration field Ea. Because the peak surface electric field causes electric breakdown of the structure, it represents a direct limitation on the maximum acceleration gradient that can be obtained. A novel hybrid dielectric-iris-loaded periodic accelerator structure is proposed to utilize the advantages of both dielectric-lined waveguides and conventional iris-loaded structures. Numerical

  2. Accelerate!

    Science.gov (United States)

    Kotter, John P

    2012-11-01

    The old ways of setting and implementing strategy are failing us, writes the author of Leading Change, in part because we can no longer keep up with the pace of change. Organizational leaders are torn between trying to stay ahead of increasingly fierce competition and needing to deliver this year's results. Although traditional hierarchies and managerial processes--the components of a company's "operating system"--can meet the daily demands of running an enterprise, they are rarely equipped to identify important hazards quickly, formulate creative strategic initiatives nimbly, and implement them speedily. The solution Kotter offers is a second system--an agile, networklike structure--that operates in concert with the first to create a dual operating system. In such a system the hierarchy can hand off the pursuit of big strategic initiatives to the strategy network, freeing itself to focus on incremental changes to improve efficiency. The network is populated by employees from all levels of the organization, giving it organizational knowledge, relationships, credibility, and influence. It can Liberate information from silos with ease. It has a dynamic structure free of bureaucratic layers, permitting a level of individualism, creativity, and innovation beyond the reach of any hierarchy. The network's core is a guiding coalition that represents each level and department in the hierarchy, with a broad range of skills. Its drivers are members of a "volunteer army" who are energized by and committed to the coalition's vividly formulated, high-stakes vision and strategy. Kotter has helped eight organizations, public and private, build dual operating systems over the past three years. He predicts that such systems will lead to long-term success in the 21st century--for shareholders, customers, employees, and companies themselves. PMID:23155997

  3. Accelerate!

    Science.gov (United States)

    Kotter, John P

    2012-11-01

    The old ways of setting and implementing strategy are failing us, writes the author of Leading Change, in part because we can no longer keep up with the pace of change. Organizational leaders are torn between trying to stay ahead of increasingly fierce competition and needing to deliver this year's results. Although traditional hierarchies and managerial processes--the components of a company's "operating system"--can meet the daily demands of running an enterprise, they are rarely equipped to identify important hazards quickly, formulate creative strategic initiatives nimbly, and implement them speedily. The solution Kotter offers is a second system--an agile, networklike structure--that operates in concert with the first to create a dual operating system. In such a system the hierarchy can hand off the pursuit of big strategic initiatives to the strategy network, freeing itself to focus on incremental changes to improve efficiency. The network is populated by employees from all levels of the organization, giving it organizational knowledge, relationships, credibility, and influence. It can Liberate information from silos with ease. It has a dynamic structure free of bureaucratic layers, permitting a level of individualism, creativity, and innovation beyond the reach of any hierarchy. The network's core is a guiding coalition that represents each level and department in the hierarchy, with a broad range of skills. Its drivers are members of a "volunteer army" who are energized by and committed to the coalition's vividly formulated, high-stakes vision and strategy. Kotter has helped eight organizations, public and private, build dual operating systems over the past three years. He predicts that such systems will lead to long-term success in the 21st century--for shareholders, customers, employees, and companies themselves.

  4. Structural Aspects of Bacterial Outer Membrane Protein Assembly.

    Science.gov (United States)

    Calmettes, Charles; Judd, Andrew; Moraes, Trevor F

    2015-01-01

    The outer membrane of Gram-negative bacteria is predominantly populated by β-Barrel proteins and lipid anchored proteins that serve a variety of biological functions. The proper folding and assembly of these proteins is essential for bacterial viability and often plays a critical role in virulence and pathogenesis. The β-barrel assembly machinery (Bam) complex is responsible for the proper assembly of β-barrels into the outer membrane of Gram-negative bacteria, whereas the localization of lipoproteins (Lol) system is required for proper targeting of lipoproteins to the outer membrane. PMID:26621472

  5. Dielectric laser acceleration of non-relativistic electrons at a photonic structure

    International Nuclear Information System (INIS)

    This thesis reports on the observation of dielectric laser acceleration of non-relativistic electrons via the inverse Smith-Purcell effect in the optical regime. Evanescent modes in the vicinity of a periodic grating structure can travel at the same velocity as the electrons along the grating surface. A longitudinal electric field component is used to continuously impart momentum onto the electrons. This is only possible in the near-field of a suitable photonic structure, which means that the electron beam has to pass the structure within about one wavelength. In our experiment we exploit the third spatial harmonic of a single fused silica grating excited by laser pulses derived from a Titanium:sapphire oscillator and accelerate non-relativistic 28 keV electrons. We measure a maximum energy gain of 280 eV, corresponding to an acceleration gradient of 25 MeV/m, already comparable with state-of-the-art radio-frequency linear accelerators. To experience this acceleration gradient the electrons approach the grating closer than 100 nm. We present the theory behind grating-based particle acceleration and discuss simulation results of dielectric laser acceleration in the near-field of photonic grating structures, which is excited by near-infrared laser light. Our measurements show excellent agreement with our simulation results and therefore confirm the direct acceleration with the light field. We further discuss the acceleration inside double grating structures, dephasing effects of non-relativistic electrons as well as the space charge effect, which can limit the attainable peak currents of these novel accelerator structures. The photonic structures described in this work can be readily concatenated and therefore represent a scalable realization of dielectric laser acceleration. Furthermore, our structures are directly compatible with the microstructures used for the acceleration of relativistic electrons demonstrated in parallel to this work by our collaborators in

  6. Dielectric laser acceleration of non-relativistic electrons at a photonic structure

    Energy Technology Data Exchange (ETDEWEB)

    Breuer, John

    2013-08-29

    This thesis reports on the observation of dielectric laser acceleration of non-relativistic electrons via the inverse Smith-Purcell effect in the optical regime. Evanescent modes in the vicinity of a periodic grating structure can travel at the same velocity as the electrons along the grating surface. A longitudinal electric field component is used to continuously impart momentum onto the electrons. This is only possible in the near-field of a suitable photonic structure, which means that the electron beam has to pass the structure within about one wavelength. In our experiment we exploit the third spatial harmonic of a single fused silica grating excited by laser pulses derived from a Titanium:sapphire oscillator and accelerate non-relativistic 28 keV electrons. We measure a maximum energy gain of 280 eV, corresponding to an acceleration gradient of 25 MeV/m, already comparable with state-of-the-art radio-frequency linear accelerators. To experience this acceleration gradient the electrons approach the grating closer than 100 nm. We present the theory behind grating-based particle acceleration and discuss simulation results of dielectric laser acceleration in the near-field of photonic grating structures, which is excited by near-infrared laser light. Our measurements show excellent agreement with our simulation results and therefore confirm the direct acceleration with the light field. We further discuss the acceleration inside double grating structures, dephasing effects of non-relativistic electrons as well as the space charge effect, which can limit the attainable peak currents of these novel accelerator structures. The photonic structures described in this work can be readily concatenated and therefore represent a scalable realization of dielectric laser acceleration. Furthermore, our structures are directly compatible with the microstructures used for the acceleration of relativistic electrons demonstrated in parallel to this work by our collaborators in

  7. Software design for automated assembly of truss structures

    Science.gov (United States)

    Herstrom, Catherine L.; Grantham, Carolyn; Allen, Cheryl L.; Doggett, William R.; Will, Ralph W.

    1992-01-01

    Concern over the limited intravehicular activity time has increased the interest in performing in-space assembly and construction operations with automated robotic systems. A technique being considered at LaRC is a supervised-autonomy approach, which can be monitored by an Earth-based supervisor that intervenes only when the automated system encounters a problem. A test-bed to support evaluation of the hardware and software requirements for supervised-autonomy assembly methods was developed. This report describes the design of the software system necessary to support the assembly process. The software is hierarchical and supports both automated assembly operations and supervisor error-recovery procedures, including the capability to pause and reverse any operation. The software design serves as a model for the development of software for more sophisticated automated systems and as a test-bed for evaluation of new concepts and hardware components.

  8. Self-assembly of conjugated oligomers and polymers at the interface: structure and properties.

    Science.gov (United States)

    Xu, Lirong; Yang, Liu; Lei, Shengbin

    2012-08-01

    In this review, we give a brief account on the recent scanning tunneling microscopy investigation of interfacial structures and properties of π-conjugated semiconducting oligomers and polymers, either at the solid-air (including solid-vacuum) or at the solid-liquid interface. The structural aspects of the self-assembly of both oligomers and polymers are highlighted. Conjugated oligomers can form well ordered supramolecular assemblies either at the air-solid or liquid-solid interface, thanks to the relatively high mobility and structural uniformity in comparison with polymers. The backbone structure, substitution of side chains and functional groups can affect the assembling behavior significantly, which offers the opportunity to tune the supramolecular structure of these conjugated oligomers at the interface. For conjugated polymers, the large molecular weight limits the mobility on the surface and the distribution in size also prevents the formation of long range ordered supramolecular assembly. The submolecular resolution obtained on the assembling monolayers enables a detailed investigation of the chain folding at the interface, both the structural details and the effect on electronic properties. Besides the ability in studying the assembling structures at the interfaces, STM also provides a reasonable way to evaluate the distribution of the molecular weight of conjugated polymers by statistic of the contour length of the adsorbed polymer chains. Both conjugated oligomers and polymers can form composite assemblies with other materials. The ordered assembly of oligomers can act as a template to controllably disperse other molecules such as coronene or fullerene. These investigations open a new avenue to fine tune the assembling structure at the interface and in turn the properties of the composite materials. To summarize scanning tunneling microscopy has demonstrated its surprising ability in the investigation of the assembling structures and properties of

  9. Fabrication and tuning techniques for side-coupled electron accelerator structures

    International Nuclear Information System (INIS)

    Beginning in 1979, Los Alamos entered into a collaboration with the National Bureau of Standards (NBS) to develop an advanced cw microtron accelerator. The accelerating structures (one 0.9-m-long, one 2.7-m-long, and two 4.0-m-long) containing a total of 184 accelerating cavities have been fabricated and tuned to the 2380-MHz operating frequency. New methods simplified the fabrication of these structures and eliminated several furnace-brazing steps. These fabrication methods, lathe-mounted tuning fixtures, and streamlined tuning techniques were developed to allow efficient production of side-coupled structures. These techniques are now being applied to the 2450-MHz racetrack microtron accelerator structures being fabricated at Los Alamos for the Nuclear Physics Department of the University of Illinois. Refinements of the described techniques will allow future accelerators of this type to be fabricated by private industry

  10. Confinement and internal structure of radiatively accelerated quasar clouds

    Energy Technology Data Exchange (ETDEWEB)

    Weymann, R.

    1976-09-01

    The equation of transfer for Lyman ..cap alpha.. and the Lyman continuum is solved for plane-parallel slabs of hydrogen with optical depths up to 25,000 in the line center to find the radiative acceleration as a function of position in the slab. The distribution of gas pressure and density which yields a constant acceleration and which matches the prescribed external pressure on the boundaries is then found. For optical depths less than about 36, solutions are obtained for arbitrarily low ratios of external pressure to incident radiation pressure. For optical depths larger than this, solutions are possible only if this ratio exceeds a critical value, and the acceleration of the cloud goes to zero and the column density to infinity as this critical value is approached. (AIP)

  11. Confinement and internal structure of radiatively accelerated quasar clouds

    International Nuclear Information System (INIS)

    The equation of transfer for Lyman α and the Lyman continuum is solved for plane-parallel slabs of hydrogen with optical depths up to 25,000 in the line center to find the radiative acceleration as a function of position in the slab. The distribution of gas pressure and density which yields a constant acceleration and which matches the prescribed external pressure on the boundaries is then found. For optical depths less than about 36, solutions are obtained for arbitrarily low ratios of external pressure to incident radiation pressure. For optical depths larger than this, solutions are possible only if this ratio exceeds a critical value, and the acceleration of the cloud goes to zero and the column density to infinity as this critical value is approached

  12. Molybdenum sputtering film characterization for high gradient accelerating structures

    Institute of Scientific and Technical Information of China (English)

    S.Bini; B.Spataro; A.Marcelli; S.Sarti; V.A.Dolgashev; S.Tantawi; A.D.Yeremian

    2013-01-01

    Technological advancements are strongly required to fulfill the demands of new accelerator devices with the highest accelerating gradients and operation reliability for the future colliders.To this purpose an extensive R&D regarding molybdenum coatings on copper is in progress.In this contribution we describe chemical composition,deposition quality and resistivity properties of different molybdenum coatings obtained via sputtering.The deposited films are thick metallic disorder layers with different resistivity values above and below the molibdenum dioxide reference value.Chemical and electrical properties of these sputtered coatings have been characterized by Rutherford backscattering,XANES and photoemission spectroscopy.We will also consider multiple cells standing wave section coated by a molybdenum layer designed to improve the performance of X-Band accelerating systems.

  13. Interset: A natural language interface for teleoperated robotic assembly of the EASE space structure

    Science.gov (United States)

    Boorsma, Daniel K.

    1989-01-01

    A teleoperated robot was used to assemble the Experimental Assembly of Structures in Extra-vehicular activity (EASE) space structure under neutral buoyancy conditions, simulating a telerobot performing structural assembly in the zero gravity of space. This previous work used a manually controlled teleoperator as a test bed for system performance evaluations. From these results several Artificial Intelligence options were proposed. One of these was further developed into a real time assembly planner. The interface for this system is effective in assembling EASE structures using windowed graphics and a set of networked menus. As the problem space becomes more complex and hence the set of control options increases, a natural language interface may prove to be beneficial to supplement the menu based control strategy. This strategy can be beneficial in situations such as: describing the local environment, maintaining a data base of task event histories, modifying a plan or a heuristic dynamically, summarizing a task in English, or operating in a novel situation.

  14. Accelerating convergence of molecular dynamics-based structural relaxation

    DEFF Research Database (Denmark)

    Christensen, Asbjørn

    2005-01-01

    We describe strategies to accelerate the terminal stage of molecular dynamics (MD)based relaxation algorithms, where a large fraction of the computational resources are used. First, we analyze the qualitative and quantitative behavior of the QuickMin family of MD relaxation algorithms and explore...... an MD trajectory, as another route for final phase acceleration. Our suggestions may be implemented within most MD quench implementations with a few, straightforward lines of code, thus maintaining the appealing simplicity of the MD quench algorithms. In this paper, we also bridge the conceptual gap...

  15. Auroral ion acceleration from lower hybrid solitary structures: A summary of sounding rocket observations

    Science.gov (United States)

    Lynch, K. A.; Arnoldy, R. L.; Kintner, P. M.; Schuck, P.; Bonnell, J. W.; Coffey, V.

    In this paper we present a review of sounding rocket observations of the ion acceleration seen in nightside auroral zone lower hybrid solitary structures. Observations from Topaz3, Amicist, and Phaze2 are presented on various spatial scales, including the two-point measurements of the Amicist mission. From this collection of observations we will demonstrate the following characteristics of transverse acceleration of ions (TAI) in lower hybrid solitary structures (LHSS). The ion acceleration process is narrowly confined to 90° pitch angle, in spatially confined regions of up to a few hundred meters across B. The acceleration process does not affect the thermal core of the ambient distribution and does not directly create a measurable effect on the ambient ion population outside the LHSS themselves. This precludes observation with these data of any nonlinear feedback between the ion acceleration and the existence or evolution of the density irregularities on which these LHSS events grow. Within the LHSS region the acceleration process creates a high-energy tail beginning at a few times the thermal ion speed. The ion acceleration events are closely associated with localized wave events. Accelerated ions bursts are also seen without a concurrent observation of a localized wave event, for two possible reasons. In some cases, the pitch angles of the accelerated tail ions are elevated above perpendicular; that is, the acceleration occurred below the observer and the mirror force has begun to act upon the distribution, moving it upward from the source. In other cases, the accelerated ion structure is spatially larger than the wave event structure, and the observation catches only the ion event. The occurrence rate of these ion acceleration events is related to the ambient environment in two ways: its altitude dependence can be modeled with the parameter B2/ne, and it is highest in regions of intense VLF activity. The cumulative ion outflow from these LHSS TAI is

  16. Self-assembly of PEGylated gold nanoparticles with satellite structures as seeds.

    Science.gov (United States)

    Bachelet, Marie; Chen, Rongjun

    2016-07-21

    We report a very simple method for the self-assembly of spherical gold nanoparticles (AuNPs), coated with poly(ethylene glycol) (PEG), through a slow evaporation process at room temperature. Clusters of particles forming satellite structures may act as seeds for the self-assembly in a crystallization-like process. Based on the transmission electron microscopy (TEM) images obtained a mechanism for the self-assembly was suggested. PMID:27384086

  17. ON FABRICATION AND BRAZING OF 15A, 120 keV CONTINUOUS DUTY ACCELERATOR GRID ASSEMBLIES

    Energy Technology Data Exchange (ETDEWEB)

    Biagi, L.A.; Koehler, G.W.; Paterson, J.A.

    1980-05-01

    The development of high intensity neutral beam injectors at the Lawrence Berkeley Laboratory has progressed from relatively low duty cycle, low energy devices to the next generation of continuous duty high energy units. The earlier pulsed versions were designed with edge cooled grid structures described ·in a previous publication. The prerequisites set by the higher duty cycle devices no longer allow the edge cooling methods to be employed. Hollow molybdenum grid rails with deionized cooling water flowing at pressures of approximately 1.73 x 10{sup 6}Pa (250 PSI) at from 1.135 to 1.89 liters per minute (.3 to .5 GPM) are brazed to Type 304L stainless steel rail holders.

  18. Electrophoretic dynamics of self-assembling branched DNA structures

    Science.gov (United States)

    Heuer, Daniel Milton

    This study advances our understanding of the electrophoretic dynamics of branched biopolymers and explores technologies designed to exploit their unique properties. New self-assembly techniques were developed to create branched DNA for visualization via fluorescence microscopy. Experiments in fixed gel networks reveal a distinct trapping behavior, in contrast with linear topologies. The finding that detection can be achieved by introducing a branch point contributes significantly to the field of separation science and can be exploited to develop new applications. Results obtained in polymer solutions point to identical mobilities for branched and linear topologies, despite large differences in their dynamics. This finding led to a new description of electrophoresis based on non-Newtonian viscoelastic effects in the electric double layer surrounding a charged object. This new theoretical framework presents a new outlook important not only to the electrophoretic physics of nucleic acids, but all charged objects including proteins, colloids, and nanoparticles. To study the behavior of smaller biopolymers, such as restriction fragments and recombination intermediates, a library of symmetrically branched DNA was synthesized followed by characterization in gels. The experimental results contribute a large body of information relating molecular architecture and the dynamics of rigid structures in an electric field. The findings allow us to create new separation technologies based on topology. These contributions can also be utilized in a number of different applications including the study of recombination intermediates and the separation of proteins according to structure. To demonstrate the importance of these findings, a sequence and mutation detection technique was envisioned and applied for genetic analysis. Restriction fragments from mutation "hotspots" in the p53 tumor suppressor gene, known to play a role in cancer development, were analyzed with this technique

  19. Superconducting accelerating structures for very low velocity ion beams

    Energy Technology Data Exchange (ETDEWEB)

    Xu, J.; Shepard, K.W.; Ostroumov, P.N.; Fuerst, J.D.; Waldschmidt, G.; /Argonne; Gonin, I.V.; /Fermilab

    2008-01-01

    This paper presents designs for four types of very-low-velocity superconducting accelerating cavity capable of providing several MV of accelerating potential per cavity, and suitable for particle velocities in the range 0.006 < v/c < 0.06. Superconducting TEM-class cavities have been widely applied to CW acceleration of ion beams. SC linacs can be formed as an array of independently-phased cavities, enabling a variable velocity profile to maximize the output energy for each of a number of different ion species. Several laboratories in the US and Europe are planning exotic beam facilities based on SC linacs. The cavity designs presented here are intended for the front-end of such linacs, particularly for the post-acceleration of rare isotopes of low charge state. Several types of SC cavities have been developed recently to cover particle velocities above 0.06c. Superconducting four-gap quarter-wave resonators for velocities 0.008 < {beta} = v/c < 0.05 were developed about two decades ago and have been successfully operated at the ATLAS SC linac at Argonne National Laboratory. Since that time, progress in simulation tools, cavity fabrication and processing have increased SC cavity gradients by a factor of 3-4. This paper applies these tools to optimize the design of a four-gap quarter-wave resonator for exotic beam facilities and other low-velocity applications.

  20. Structural Consequences of Anionic Host-Cationic Guest Interactions in a Supramolecular Assembly

    Energy Technology Data Exchange (ETDEWEB)

    Pluth, Michael D.; Johnson, Darren W.; Szigethy, Geza; Davis, Anna V.; Teat, Simon J.; Oliver, Allen G.; Bergman, Robert G.; Raymond, Kenneth N.

    2008-07-09

    The molecular structure of the self-assembled supramolecular assembly [M{sub 4}L{sub 6}]{sup 12-} has been explored with different metals (M = Ga{sup III}, Fe{sup III}, Ti{sup IV}) and different encapsulated guests (NEt{sub 4}{sup +}, BnNMe{sub 3}{sup +}, Cp{sub 2}Co{sup +}, Cp*{sub 2}Co{sup +}) by X-ray crystallography. While the identity of the metal ions at the vertices of the M{sub 4}L{sub 6} structure is found to have little effect on the assembly structure, encapsulated guests significantly distort the size and shape of the interior cavity of the assembly. Cations on the exterior of the assembly are found to interact with the assembly through either {pi}-{pi}, cation-{pi}, or CH-{pi} interactions. In some cases, the exterior guests interact with only one assembly, but cations with the ability to form multiple {pi}-{pi} interactions are able to interact with adjacent assemblies in the crystal lattice. The solvent accessible cavity of the assembly is modeled using the rolling probe method and found to range from 253-434 {angstrom}{sup 3}, depending on the encapsulated guest. Based on the volume of the guest and the volume of the cavity, the packing coefficient for each host-guest complex is found to range from 0.47-0.67.

  1. Linear Accelerators

    CERN Document Server

    Vretenar, M

    2014-01-01

    The main features of radio-frequency linear accelerators are introduced, reviewing the different types of accelerating structures and presenting the main characteristics aspects of linac beam dynamics.

  2. Design and validation of wireless acceleration sensor network for structural health monitoring

    Institute of Scientific and Technical Information of China (English)

    Yu Yan; Ou Jinping

    2006-01-01

    A wireless sensor network is proposed to monitor the acceleration of structures for the purpose of structural health monitoring of civil engineering structures. Using commercially available parts, several modules are constructed and integrated into complete wireless sensors and base stations. The communication protocol is designed and the fusion arithmetic of the temperature and acceleration is embedded in the wireless sensor node so that the measured acceleration values are more accurate. Measures are adopted to finish energy optimization, which is an important issue for a wireless sensor network. The test is performed on an offshore platform model, and the experimental results are given to show the feasibility of the designed wireless sensor network.

  3. Structural simulations of nanomaterials self-assembled from ionic macrocycles.

    Energy Technology Data Exchange (ETDEWEB)

    van Swol, Frank B.; Medforth, Craig John (University of New Mexico, Albuquerque, NM)

    2010-10-01

    Recent research at Sandia has discovered a new class of organic binary ionic solids with tunable optical, electronic, and photochemical properties. These nanomaterials, consisting of a novel class of organic binary ionic solids, are currently being developed at Sandia for applications in batteries, supercapacitors, and solar energy technologies. They are composed of self-assembled oligomeric arrays of very large anions and large cations, but their crucial internal arrangement is thus far unknown. This report describes (a) the development of a relevant model of nonconvex particles decorated with ions interacting through short-ranged Yukawa potentials, and (b) the results of initial Monte Carlo simulations of the self-assembly binary ionic solids.

  4. Structural integrity assessment and stress measurement of CHASNUPP-1 fuel assembly

    OpenAIRE

    Waseem; Murtaza Ghulam; Siddiqui Ashfaq Ahmad; Akhtar Syed Waseem

    2016-01-01

    Fuel assembly of the PWR nuclear power plant is a long and flexible structure. This study has been made in an attempt to find the structural integrity of the fuel assembly (FA) of Chashma Nuclear Power Plant-1 (CHASNUPP-1) at room temperature in air. The non-linear contact and structural tensile analysis have been performed using ANSYS 13.0, in order to determine the fuel assembly (FA) elongation behaviour as well as the location and values of the stress intensity and stresses developed in ax...

  5. Dynamic transformation of self-assembled structures using anisotropic magnetized hydrogel microparticles

    Science.gov (United States)

    Yoshida, Satoru; Takinoue, Masahiro; Iwase, Eiji; Onoe, Hiroaki

    2016-08-01

    This paper describes a system through which the self-assembly of anisotropic hydrogel microparticles is achieved, which also enables dynamic transformation of the assembled structures. Using a centrifuge-based microfluidic device, anisotropic hydrogel microparticles encapsulating superparamagnetic materials on one side are fabricated, which respond to a magnetic field. We successfully achieve dynamic assembly using these hydrogel microparticles and realize three different self-assembled structures (single and double pearl chain structures, and close-packed structures), which can be transformed to other structures dynamically via tuning of the precessional magnetic field. We believe that the developed system has potential application as an effective platform for a dynamic cell manipulation and cultivation system, in biomimetic autonomous microrobot organization, and that it can facilitate further understanding of the self-organization and complex systems observed in nature.

  6. H-mode accelerating structures with PMQ focusing for low-beta ion beams

    Energy Technology Data Exchange (ETDEWEB)

    Kurennoy, Sergey S [Los Alamos National Laboratory; O' Hara, James F [Los Alamos National Laboratory; Olivas, Eric R [Los Alamos National Laboratory; Rybarcyk, Lawrence J [Los Alamos National Laboratory

    2010-01-01

    We are developing high-efficiency normal-conducting RF accelerating structures based on inter-digital H-mode (IH) cavities and the transverse beam focusing with permanent-magnet quadrupoles (PMQ), for beam velocities in the range of a few percent of the speed of light. Such IH-PMQ accelerating structures following a short RFQ can be used in the front end of ion linacs or in stand-alone applications, e.g. a compact deuteron-beam accelerator up to the energy of several MeV. Results of combined 3-D modeling for a full IH-PMQ accelerator tank - electromagnetic computations, beam-dynamics simulations with high currents, and thermal-stress analysis - are presented. The accelerating field profile in the tank is tuned to provide the best beam propagation using coupled iterations of electromagnetic and beam-dynamics modeling. A cold model of the IH-PMQ tank is being manufactured.

  7. Spectrographic Approach to Study of RF Conditioning Process in Accelerating RF Structures

    CERN Document Server

    Tomizawa, H; Taniuchi, T

    2004-01-01

    The acceleration gradient of a linac is limited by rf breakdown in its accelerating structure. We applied an imaging spectrograph system to study the mechanism of rf breakdown phenomena in accelerating rf structures. Excited outgases emit light during rf breakdown, and the type of outgases depend on surface treatments and rinsing methods for their materials. To study rf breakdown, we used 2-m-long accelerating structures and investigated the effects when high-pressure ultrapure water rinsing (HPR) treatment was applied to these rf structures. We performed experiments to study the outgases under rf conditioning with quadruple mass spectroscopy and imaging spectrography. As a result, we could observe instantly increasing signals at mass numbers of 2 (H2

  8. Development and verification testing of automation and robotics for assembly of space structures

    Science.gov (United States)

    Rhodes, Marvin D.; Will, Ralph W.; Quach, Cuong C.

    1993-01-01

    A program was initiated within the past several years to develop operational procedures for automated assembly of truss structures suitable for large-aperture antennas. The assembly operations require the use of a robotic manipulator and are based on the principle of supervised autonomy to minimize crew resources. A hardware testbed was established to support development and evaluation testing. A brute-force automation approach was used to develop the baseline assembly hardware and software techniques. As the system matured and an operation was proven, upgrades were incorprated and assessed against the baseline test results. This paper summarizes the developmental phases of the program, the results of several assembly tests, the current status, and a series of proposed developments for additional hardware and software control capability. No problems that would preclude automated in-space assembly of truss structures have been encountered. The current system was developed at a breadboard level and continued development at an enhanced level is warranted.

  9. Accelerator driven assembly

    Energy Technology Data Exchange (ETDEWEB)

    Balderas, J.; Cappiello, M.; Cummings, C.E.; Davidson, R. [and others

    1997-01-01

    This report addresses a Los Alamos National Laboratory (LANL) proposal to build a pulsed neutron source for simulating nuclear-weapons effects. A point design for the pulsed neutron facility was initiated early in FY94 after hosting a Defense Nuclear Agency (DNA) panel review and after subsequently visiting several potential clients and users. The technical and facility designs contained herein fulfill the Statement of Work (SOW) agreed upon by LANL and DNA. However, our point designs and parametric studies identify a unique, cost-effective, above-ground capability for neutron nuclear-weapons-effects studies at threat levels. This capability builds on existing capital installations and infrastructure at LANL. We believe that it is appropriate for us, together with the DNA, to return to the user community and ask for their comments and critiques. We also realize that the requirements of last year have changed significantly. Therefore, the present report is a `working document` that may be revised where feasible as we learn more about the most recent Department of Defense (DoD) and Department of Energy (DOE) needs.

  10. New structure for accelerating heavy ions; Une nouvelle structure acceleratrice d'ions lourds

    Energy Technology Data Exchange (ETDEWEB)

    Pottier, J. [Commissariat a l' Energie Atomique, Saclay (France). Centre d' Etudes Nucleaires

    1969-06-01

    A new type of accelerating structure is described which is particular suited to heavy ions (high wavelength, high shunt impedance, small size). Its properties are analyzed and compared to those of other structures (more particularly the lines). It is shown that a mode of operation exists of which the shunt impedance in the station mode has 80 per cent of its value for the progressive mode. Finally results are given obtained with a small experimental apparatus which uses this structure. (author) [French] On decrit un nouveau type de structure acceleratrice, particulierement appropriee aux ions lourds (grande longueur d'onde, forte impedance-shunt, faibles dimensions). Ses proprietes sont analysees et comparees a celles d'autres structures (plus particulierement les lignes). On met en evidence un mode de fonctionnement pour lequel l'impedance shunt en regime stationnaire vaut 80 pour cent de l'impedance shunt en regime progressif. Enfin on decrit les resultats obtenus a l'aide d'une petite machine experimentale mettant en oeuvre cette structure. (auteur)

  11. Real space simulation with reality modeling for vibration table by an assembly structural analysis

    International Nuclear Information System (INIS)

    It has been disciplined to realize a simulation space, which can emulate real world in digital space, such as so named either virtual reality or virtual facility. In order to create a huge and complex space like nuclear facilities of a real world, there are lack of methodology and technology for reproducing facilities in digital space. In this paper, it is realized an assembly structural analysis for supplying one of the methodology to reproduce facilities in digital space. The first attempt of the assembly structural analysis is accomplished by finite element analysis by integrating parts of facilities. Since the assembly structural analysis requests massive calculation, grid computing was applied for the computational resource. It has been practiced numerical experiments for a test reactor, HTTR: High Temperature engineering Test Reactor driven by Japan Atomic Energy Agency. The assembly structural analysis by finite element method is confirmed to be able to analyze a huge and complex facility. (author)

  12. Modification of the beam transfer model of travelling wave accelerator structures at SACLA

    International Nuclear Information System (INIS)

    In order to perform efficient beam tuning at SACLA, we had developed a beam transfer model to calculate the beam transverse envelope in a linear accelerator using linear symplectic matrices. However the measured beam orbit responses were not consistent with the calculated orbit. In order to investigate the error source, we modify the transfer matrix of an accelerator structure so that the matrix model reproduces the measured orbit response. In this paper, we report detail of the error source and how the beam transfer model of a travelling wave accelerator structure is modified. (author)

  13. Cold test results of a side-coupled standing-wave electron-accelerating structure

    Science.gov (United States)

    Song, Ki Baek; Li, Yonggui; Lee, Sanghyun; Lee, Byeong-No; Park, Hyung Dal; Cha, Sung-Su; Lee, Byung Cheol

    2013-07-01

    The radio-frequency (RF) cavity for the dual-energy S-band electron linear accelerator (LINAC) is designed for a cargo inspection system (CIS) at the Korea Atomic Energy Research Institute (KAERI). The cold test results of the electron accelerator structure, which has a side-coupled standing-wave interlaced-pulse dual-energy mode, are described. The design concept, basic structure, microwave-tuning method, and cold-test procedure are described as well. The measured dispersion curve, spectrum characteristics, ρ-f relation of the power coupler, and axial field distribution of the accelerating gradient are provided.

  14. Theory of factors limiting high gradient operation of warm accelerating structures

    Energy Technology Data Exchange (ETDEWEB)

    Nusinovich, Gregory S. [Univ. of Maryland, College Park, MD (United States)

    2014-07-22

    This report consists of two parts. In the first part we describe a study of the heating of microprotrusions on surfaces of accelerating structures. This ;process is believed to lead to breakdown in these structures. Our study revealed that for current accelerator parameters melting should not occur due to space charge limitations of the current emitted by a protrusion. The second part describes a novel concept to develop THz range sources based on harmonic cyclotron masers for driving future colliders. This work was stimulated by a recent request of SLAC to develop high power, high-efficiency sources of sub-THz radiation for future high-gradient accelerators.

  15. Assembly and structure of neurofilaments isolated from bovine spinal cord

    Institute of Scientific and Technical Information of China (English)

    佟向军; 陈建国; 刘洁; 庞世瑾; 翟中和

    1999-01-01

    Neurofilaments (NFs) are neuron-specific intermediate filaments. The NFs were isolated from bovine spinal cord by differential centrifugation. The NFs were detected with electron microscopy and scanning tunneling microscopy (STM). Under STM, two kinds of sidearm of NFs were revealed: one was short, the other was long. They were arrayed along the 10-nm width core filaments one by one. The intervals between two adjacent long sidearms or two short sidearms were 20—22 nm, while those between two adjacent long and short sidearms were 10—11 nm. It was proposed that the rod domain of NF triplet prnteins was 3/4-staggered. The assembly properties of NF triplet proteins were also studied. Immuno-colloidal-gold labeling assay showed that NF-M and NF-H are able to co-assemble into long filaments with NF-L. NF-M and NF-H can also co-constitute into winding filaments.

  16. Rational design of self-assembly pathways for complex multicomponent structures

    Science.gov (United States)

    Jacobs, William M.; Reinhardt, Aleks; Frenkel, Daan

    2015-01-01

    The field of complex self-assembly is moving toward the design of multiparticle structures consisting of thousands of distinct building blocks. To exploit the potential benefits of structures with such “addressable complexity,” we need to understand the factors that optimize the yield and the kinetics of self-assembly. Here we use a simple theoretical method to explain the key features responsible for the unexpected success of DNA-brick experiments, which are currently the only demonstration of reliable self-assembly with such a large number of components. Simulations confirm that our theory accurately predicts the narrow temperature window in which error-free assembly can occur. Even more strikingly, our theory predicts that correct assembly of the complete structure may require a time-dependent experimental protocol. Furthermore, we predict that low coordination numbers result in nonclassical nucleation behavior, which we find to be essential for achieving optimal nucleation kinetics under mild growth conditions. We also show that, rather surprisingly, the use of heterogeneous bond energies improves the nucleation kinetics and in fact appears to be necessary for assembling certain intricate 3D structures. This observation makes it possible to sculpt nucleation pathways by tuning the distribution of interaction strengths. These insights not only suggest how to improve the design of structures based on DNA bricks, but also point the way toward the creation of a much wider class of chemical or colloidal structures with addressable complexity. PMID:25941388

  17. Efficient low-beta H-mode accelerating structures with PMQ focusing

    Energy Technology Data Exchange (ETDEWEB)

    Kurennoy, Sergey S [Los Alamos National Laboratory; O' Hara, James F [Los Alamos National Laboratory; Olivas, Eric R [Los Alamos National Laboratory; Rybarcyk, Lawrence J [Los Alamos National Laboratory

    2008-01-01

    We are developing high-efficiency room-temperature RF accelerating structures for beam velocities in the range of a few percent of the speed of light by merging two well-known ideas: H-mode cavities and the transverse beam focusing with permanent-magnet quadrupoles (PMQ). Combining electromagnetic 3-D modeling with beam dynamics simulations and thermal-stress analysis, we have found that the H-mode structures with PMQ focusing provide a very efficient and practical accelerator for light-ion beams of considerable currents. Such accelerating structures following a short RFQ can be used in the front end of ion linacs or in stand-alone applications such as a compact deuteron-beam accelerator up to the energy of a few MeV.

  18. M4D: a powerful tool for structured programming at assembly level for MODCOMP computers

    International Nuclear Information System (INIS)

    Structured programming techniques offer numerous benefits for software designers and form the basis of the current high level languages. However, these techniques are generally not available to assembly programmers. The M4D package was therefore developed for a large project to enable the use of structured programming constructs such as DO.WHILE-ENDDO and IF-ORIF-ORIF...-ELSE-ENDIF in the assembly code for MODCOMP computers. Programs can thus be produced that have clear semantics and are considerably easier to read than normal assembly code, resulting in reduced program development and testing effort, and in improved long-term maintainability of the code. This paper describes the M4D structured programming tool as implemented for MODCOMP'S MAX III and MAX IV assemblers, and illustrates the use of the facility with a number of examples

  19. An atomic model of HIV-1 capsid-SP1 reveals structures regulating assembly and maturation.

    Science.gov (United States)

    Schur, Florian K M; Obr, Martin; Hagen, Wim J H; Wan, William; Jakobi, Arjen J; Kirkpatrick, Joanna M; Sachse, Carsten; Kräusslich, Hans-Georg; Briggs, John A G

    2016-07-29

    Immature HIV-1 assembles at and buds from the plasma membrane before proteolytic cleavage of the viral Gag polyprotein induces structural maturation. Maturation can be blocked by maturation inhibitors (MIs), thereby abolishing infectivity. The CA (capsid) and SP1 (spacer peptide 1) region of Gag is the key regulator of assembly and maturation and is the target of MIs. We applied optimized cryo-electron tomography and subtomogram averaging to resolve this region within assembled immature HIV-1 particles at 3.9 angstrom resolution and built an atomic model. The structure reveals a network of intra- and intermolecular interactions mediating immature HIV-1 assembly. The proteolytic cleavage site between CA and SP1 is inaccessible to protease. We suggest that MIs prevent CA-SP1 cleavage by stabilizing the structure, and MI resistance develops by destabilizing CA-SP1. PMID:27417497

  20. Photo-induced reversible structural transition of cationic diphenylalanine peptide self-assembly.

    Science.gov (United States)

    Ma, Hongchao; Fei, Jinbo; Li, Qi; Li, Junbai

    2015-04-17

    The photo-induced self-assembly of a cationic diphenylalanine peptide (CDP) is investigated using a photoswitchable sulfonic azobenzene as the manipulating unit. A reversible structural transition between a branched structure and a vesicle-like structure is observed by alternating between UV and visible light irradiation. PMID:25405602

  1. Particle Acceleration at Filamentary Structures Downstream of Collisionless Shocks in the Heliosphere.

    Science.gov (United States)

    Kucharek, H.; Pogorelov, N. V.; Gamayunov, K. V.

    2015-12-01

    Collisionless shocks are an important feature in astrophysical, heliospheric and magnetospheric settings. At these structures plasma is heated, the properties of flows are changed, and particles are accelerated to high energies. Particles are accelerated throughout the heliosphere. There are no times or conditions where suprathermal ions forming tails are not present on the solar wind ion distribution, and given the low speeds of these particles they must be accelerated locally in the heliosphere. Coronal mass ejections (CMEs) and co-rotating interaction regions (CIRs) accelerate particles up to 10s of MeV/nucleon. The termination shock of the solar and the heliosheath produce energetic particles including the Anomalous Cosmic Rays (ACRs), with energies in excess of 100 MeV. In the last few years' very interesting observations at low energies showing power laws that cannot be explained with commonly accepted acceleration mechanisms and thus increased the need for alternative acceleration processes. Fully consistent kinetic particle simulations such as hybrid simulations appear to be a powerful tool to investigated ion acceleration. Nowadays these simulations can be performed in 3D and relative large simulation domains covering up to hundreds of ion inertial length in size and thus representing the MHD scale. These 3D hybrid simulations show filamentary magnetic and density structures, which could be interpreted as small-scale flux ropes. The growth of these small-scale structures is also associated with ion acceleration. In this talk we will discuss properties of these filamentary structures, their spatial and temporal evolution and the particle dynamics during the acceleration process. The results of this study may be of particular importance for future high resolution magnetospheric and heliospheric mission such as THOR.

  2. Self-assembly of nanocomponents into composite structures: derivation and simulation of Langevin equations.

    Science.gov (United States)

    Pankavich, S; Shreif, Z; Miao, Y; Ortoleva, P

    2009-05-21

    The kinetics of the self-assembly of nanocomponents into a virus, nanocapsule, or other composite structure is analyzed via a multiscale approach. The objective is to achieve predictability and to preserve key atomic-scale features that underlie the formation and stability of the composite structures. We start with an all-atom description, the Liouville equation, and the order parameters characterizing nanoscale features of the system. An equation of Smoluchowski type for the stochastic dynamics of the order parameters is derived from the Liouville equation via a multiscale perturbation technique. The self-assembly of composite structures from nanocomponents with internal atomic structure is analyzed and growth rates are derived. Applications include the assembly of a viral capsid from capsomers, a ribosome from its major subunits, and composite materials from fibers and nanoparticles. Our approach overcomes errors in other coarse-graining methods, which neglect the influence of the nanoscale configuration on the atomistic fluctuations. We account for the effect of order parameters on the statistics of the atomistic fluctuations, which contribute to the entropic and average forces driving order parameter evolution. This approach enables an efficient algorithm for computer simulation of self-assembly, whereas other methods severely limit the timestep due to the separation of diffusional and complexing characteristic times. Given that our approach does not require recalibration with each new application, it provides a way to estimate assembly rates and thereby facilitate the discovery of self-assembly pathways and kinetic dead-end structures. PMID:19466829

  3. The Limits of Bound Structures in the Accelerating Universe

    CERN Document Server

    D"unner, R; Meza, A; Reisenegger, A; D\\"unner, Rolando; Araya, Pablo A.; Meza, Andr\\'es; Reisenegger, Andreas

    2006-01-01

    According to the latest evidence, the Universe is entering an era of exponential expansion, where gravitationally bound structures will get disconnected from each other, forming isolated `island universes'. In this scenario, we present a theoretical criterion to determine the boundaries of gravitationally bound structures and a physically motivated definition of superclusters as the largest bound structures in the Universe. We use the spherical collapse model self-consistently to obtain an analytical condition for the mean density enclosed by the last bound shell of the structure (2.36 times the critical density in the present Universe, assumed to be flat, with 30 per cent matter and 70 per cent cosmological constant, in agreement with the previous, numerical result of Chiueh and He). $N$-body simulations extended to the future show that this criterion, applied at the present cosmological epoch, defines a sphere that encloses $\\approx 99.7$ per cent of the particles that will remain bound to the structure at ...

  4. Acceleration of Amide Bond Rotation by Encapsulation in the Hydrophobic Interior of a Water-Soluble Supramolecular Assembly

    Energy Technology Data Exchange (ETDEWEB)

    Pluth, Michael D.; Bergman, Robert G.; Raymond, Kenneth N.

    2008-04-08

    The hydrophobic interior cavity of a self-assembled supramolecular assembly exploits the hydrophobic effect for the encapsulation of tertiary amides. Variable temperature 1H NMR experiments reveal that the free energy barrier for rotation around the C-N amide bond is lowered by up to 3.6 kcal/mol upon encapsulation. The hydrophobic cavity of the assembly is able to stabilize the less polar transition state of the amide rotation process. Carbon-13 labeling studies showed that the {sup 13}C NMR carbonyl resonance increases with temperature for the encapsulated amides which suggests that the assembly is able to favor a twisted for of the amide.

  5. Experimental studies of W-band accelerator structures at high field

    Science.gov (United States)

    Hill, Marc Edward

    2001-06-01

    A high-gradient electron accelerator is desired for high- energy physics research, where frequency scalings of breakdown and trapping of itinerant beamline particles dictates operation of the accelerator at short wavelengths. The first results of design and test of a high-gradient mm-wave linac with an operating frequency at 91.392 GHz (W-band) are presented. A novel approach to particle acceleration is presented employing a planar, dielectric lined waveguide used for particle acceleration. The traveling wave fields in the planar dielectric accelerator (PDA) are analyzed for an idealized structure, along with a circuit equivalent model used for understanding the structure as a microwave circuit. Along with the W-band accelerator structures, other components designed and tested are high power rf windows, high power attenuators, and a high power squeeze-type phase shifter. The design of the accelerator and its components where eased with the aide of numerical simulations using a finite-difference electromagnetic field solver. Manufacturing considerations of the small, delicate mm-wave components and the steps taken to reach a robust fabrication process are detailed. These devices were characterized under low power using a two-port vector network analyzer to verify tune and match, including measurements of the structures' fields using a bead-pull. The measurements are compared with theory throughout. Addition studies of the W-band structures were performed under high power utilizing a 11.424 GHz electron linac as a current source. Test results include W-band power levels of 200 kW, corresponding to fields in the PDA of over 20 MV/m, higher than any collider. Also presented are the first measurements of the quadrapole component of the monopole accelerating field.

  6. Beam Momentum Changes due to Discharges in High-gradient Accelerator Structures

    OpenAIRE

    Palaia, Andrea

    2013-01-01

    The key questions left unanswered by the Standard Model, and the recent discovery of a Standard Model-like Higgs boson, demand an extension of the research on particle physics to the TeV energy scale. The Compact Linear Collider, CLIC, is a candidate project to achieve such goal. It is a linear lepton collider based on a novel two-beam acceleration scheme capable of high-gradient acceleration in X-band accelerator structures. The high electric fields required, however, entail the occurrence o...

  7. Analysis of Higher Order Modes in Large Superconducting Radio Frequency Accelerating Structures

    CERN Document Server

    Galek, Tomasz; Brackebusch, Korinna; Van Rienen, Ursula

    2015-01-01

    Superconducting radio frequency cavities used for accelerating charged particle beams are commonly used in accelerator facilities around the world. The design and optimization of modern superconducting RF cavities requires intensive numerical simulations. Vast number of operational parameters must be calculated to ensure appropriate functioning of the accelerating structures. In this study, we primarily focus on estimation and behavior of higher order modes in superconducting RF cavities connected in chains. To calculate large RF models the state-space concatenation scheme, an efficient hybrid method, is employed.

  8. Structure and energetics of diphenylalanine self-assembling on Cu(110).

    Science.gov (United States)

    Tomba, Giulia; Lingenfelder, Magalí; Costantini, Giovanni; Kern, Klaus; Klappenberger, Florian; Barth, Johannes V; Ciacchi, Lucio Colombi; De Vita, Alessandro

    2007-12-13

    We investigate the dynamical features of the adsorption of diphenylalanine molecules on the Cu(110) surface and of their assembling into supramolecular structures by a combination of quantum and classical atomistic modeling with dynamic scanning tunneling microscopy and spectroscopic experiments. Our results reveal a self-assembling mechanism in which isolated adsorbed molecules change their conformation and adsorption mode as a consequence of their mutual interactions. In particular, the formation of zwitterions after proton transfer between initially neutral molecules is found to be the key event of the assembling process, which stabilizes the supramolecular structures. Because of the constraints on the intermolecular bonds exerted by the surface-molecule interactions, the assembly process is strictly stereoselective, and may suggest a general model for patterning and functionalization of bare metal surfaces with short chiral peptides. PMID:17999478

  9. Flexible assembly module for beam-shaping product families based on support structures

    Science.gov (United States)

    Haag, Sebastian; Rübenach, Olaf; Beleke, Andreas; Haverkamp, Tobias; Müller, Tobias; Zontar, Daniel; Wenzel, Christian; Brecher, Christian

    2016-03-01

    Depending on the application, high-power diode lasers (HPDL) have individual requirements on their beam-shaping as well as their mechanical fixation. In order to reduce assembly efforts, laser system manufacturers request pre-assembled beam-shaping systems consisting of a support structure for adhesive bonding as well as one, two or more lenses. Therefore, manufacturers of micro-optics for HPDL need flexible solutions for assembling beam-shaping subassemblies. This paper discusses current solutions for mounting optical subassemblies for beam-shaping of high-power diode lasers and their drawbacks regarding quality and scalability. Subsequently, the paper presents a device which can be used for the sensor-guided assembly of beam-shaping systems based on bottomtab support structures. Results from test productions of several hundred modules are presented showing that repeatability in the range of 1 μm is feasible on an industrial level.

  10. An Update on the DOE Early Career Project on Photonic Band Gap Accelerator Structures

    Energy Technology Data Exchange (ETDEWEB)

    Simakov, Evgenya I. [Los Alamos National Laboratory; Edwards, Randall L. [Los Alamos National Laboratory; Haynes, William B. [Los Alamos National Laboratory; Madrid, Michael A. [Los Alamos National Laboratory; Romero, Frank P. [Los Alamos National Laboratory; Tajima, Tsuyoshi [Los Alamos National Laboratory; Tuzel, Walter M. [Los Alamos National Laboratory; Boulware , Chase H. [Niowave, Inc; Grimm, Terry [Niowave, Inc.

    2012-06-07

    We performed fabrication of two SRF PBG resonators at 2.1 GHz and demonstrated their proof-of-principle operation at high gradients. Measured characteristics of the resonators were in good agreement with theoretical predictions. We demonstrated that SRF PBG cavities can be operated at 15 MV/m accelerating gradients. We completed the design and started fabrication of the 16-cell PBG accelerating structure at 11.7 GHz for wakefield testing at AWA.

  11. Summary Report of Working Group 7: Electromagnetic-Structure Based Accelerators

    Energy Technology Data Exchange (ETDEWEB)

    Colby, E.; /SLAC; Musumeci, P.; /INFN, Rome

    2007-04-02

    We detail the most pressing physics and technical issues confronting short-wavelength acceleration. We review new acceleration concepts that are proposed and under development, and recent progress on technical issues such as structure fabrication and material damage. We outline key areas where work is still needed before a reliable assessment of the value of working at wavelengths below 1 cm can be made. Possible ways to enhance collaboration and progress in this important area are also discussed.

  12. Thermal and structural stability of medium energy target carrier assembly for NOvA at Fermilab

    Energy Technology Data Exchange (ETDEWEB)

    McGee, M.W.; Ader, C.; Anderson, K.; Hylen, J.; Martens, M.; /Fermilab

    2010-05-01

    The NOvA project will upgrade the existing Neutrino at Main Injector (NuMI) project beamline at Fermilab to accommodate beam power of 700 kW. The Medium Energy (ME) graphite target assembly is provided through an accord with the State Research Center of Russia Institute for High Energy Physics (IHEP) at Protvino, Russia. The effects of proton beam energy deposition within beamline components are considered as thermal stability of the target carrier assembly and alignment budget are critical operational issues. Results of finite element thermal and structural analysis involving the target carrier assembly is provided with detail regarding the target's beryllium windows.

  13. Flow induced vibrations of the CLIC X-Band accelerating structures

    CERN Document Server

    Charles, Tessa; Boland, Mark; Riddone, Germana; Samoshkin, Alexandre

    2011-01-01

    Turbulent cooling water in the Compact Linear Collider (CLIC) accelerating structures will inevitably induce some vibrations. The maximum acceptable amplitude of vibrations is small, as vibrations in the accelerating structure could lead to beam jitter and alignment difficulties. A Finite Element Analysis model is needed to identify the conditions under which turbulent instabilities and significant vibrations are induced. Due to the orders of magnitude difference between the fluid motion and the structure’s motion, small vibrations of the structure will not contribute to the turbulence of the cooling fluid. Therefore the resonant conditions of the cooling channels presented in this paper, directly identify the natural frequencies of the accelerating structures to be avoided under normal operating conditions. In this paper a 2D model of the cooling channel is presented finding spots of turbulence being formed from a shear layer instability. This effect is observed through direct visualization and wavelet ana...

  14. Cumulative Laws,Team Assembling Mechanisms Determining Network Structure

    Institute of Scientific and Technical Information of China (English)

    WU Bin; LIU Qi; YE Qi

    2008-01-01

    A number of researching works have shed light on the field of complex networks recently.We investigate a wide range of real-world networks and find several interesting phenomena.Firstly,almost all of these networks evolve by overlapping new small graphs on former networks.Secondly,not only the degree sequence of the mature network follows a power-law distribution,but also the distribution of the cumulative occurrence times during the growing process are revealed to have a heavy tail.Existing network evolving models do not provide interpretation to these phenomena.We suggest a model based on the team assembling mechanism,which is extracted from the growing processes of real-world networks and requires simple parameters,and produces networks exhibiting these properties observed in the present study and in previous works.

  15. Purely peptidic amphiphiles : understanding and controlling their self-assembled structures

    OpenAIRE

    Schuster, Thomas Bernhard

    2011-01-01

    Amphiphilic molecules spontaneously self-assemble into a variety of structures in solution. The term amphiphilic indicates that one part of the molecule is attracted to the solvent, while the other is not. Interactions such as between solute-solvent and solute-solute thus determine the organization. Understanding the self-assembly means understanding those interactions and their driving forces. In the first chapter an overview of the self-organization of amphiphilic molecules into supermolecu...

  16. Self-assembly of hierarchically ordered structures in DNA nanotube systems

    Science.gov (United States)

    Glaser, Martin; Schnauß, Jörg; Tschirner, Teresa; Schmidt, B. U. Sebastian; Moebius-Winkler, Maximilian; Käs, Josef A.; Smith, David M.

    2016-05-01

    The self-assembly of molecular and macromolecular building blocks into organized patterns is a complex process found in diverse systems over a wide range of size and time scales. The formation of star- or aster-like configurations, for example, is a common characteristic in solutions of polymers or other molecules containing multi-scaled, hierarchical assembly processes. This is a recurring phenomenon in numerous pattern-forming systems ranging from cellular constructs to solutions of ferromagnetic colloids or synthetic plastics. To date, however, it has not been possible to systematically parameterize structural properties of the constituent components in order to study their influence on assembled states. Here, we circumvent this limitation by using DNA nanotubes with programmable mechanical properties as our basic building blocks. A small set of DNA oligonucleotides can be chosen to hybridize into micron-length DNA nanotubes with a well-defined circumference and stiffness. The self-assembly of these nanotubes to hierarchically ordered structures is driven by depletion forces caused by the presence of polyethylene glycol. This trait allowed us to investigate self-assembly effects while maintaining a complete decoupling of density, self-association or bundling strength, and stiffness of the nanotubes. Our findings show diverse ranges of emerging structures including heterogeneous networks, aster-like structures, and densely bundled needle-like structures, which compare to configurations found in many other systems. These show a strong dependence not only on concentration and bundling strength, but also on the underlying mechanical properties of the nanotubes. Similar network architectures to those caused by depletion forces in the low-density regime are obtained when an alternative hybridization-based bundling mechanism is employed to induce self-assembly in an isotropic network of pre-formed DNA nanotubes. This emphasizes the universal effect inevitable

  17. 1.15 Å resolution structure of the proteasome-assembly chaperone Nas2 PDZ domain

    Energy Technology Data Exchange (ETDEWEB)

    Singh, Chingakham R. [Kansas State University, 338 Ackert Hall, Manhattan, KS 66506 (United States); Lovell, Scott; Mehzabeen, Nurjahan [University of Kansas, Del Shankel Structural Biology Center, Lawrence, KS 66047 (United States); Chowdhury, Wasimul Q.; Geanes, Eric S. [Kansas State University, 338 Ackert Hall, Manhattan, KS 66506 (United States); Battaile, Kevin P. [IMCA-CAT Hauptman–Woodward Medical Research Institute, 9700 South Cass Avenue, Building 435A, Argonne, IL 60439 (United States); Roelofs, Jeroen, E-mail: jroelofs@ksu.edu [Kansas State University, 338 Ackert Hall, Manhattan, KS 66506 (United States)

    2014-03-25

    The proteasome-assembly chaperone Nas2 binds to the proteasome subunit Rpt5 using its PDZ domain. The structure of the Nas2 PDZ domain has been determined. The 26S proteasome is a 2.5 MDa protease dedicated to the degradation of ubiquitinated proteins in eukaryotes. The assembly of this complex containing 66 polypeptides is assisted by at least nine proteasome-specific chaperones. One of these, Nas2, binds to the proteasomal AAA-ATPase subunit Rpt5. The PDZ domain of Nas2 binds to the C-terminal tail of Rpt5; however, it does not require the C-terminus of Rpt5 for binding. Here, the 1.15 Å resolution structure of the PDZ domain of Nas2 is reported. This structure will provide a basis for further insights regarding the structure and function of Nas2 in proteasome assembly.

  18. Self-Assembly of Nanocomponents into Composite Structures: Derivation and Simulation of Langevin Equations

    CERN Document Server

    Pankavich, Stephen; Miao, Yinglong; Ortoleva, Peter

    2010-01-01

    The kinetics of the self-assembly of nanocomponents into a virus, nanocapsule, or other composite structure is analyzed via a multiscale approach. The objective is to achieve predictability and to preserve key atomic-scale features that underlie the formation and stability of the composite structures. We start with an all-atom description, the Liouville equation, and the order parameters characterizing nanoscale features of the system. An equation of Smoluchowski type for the stochastic dynamics of the order parameters is derived from the Liouville equation via a multiscale perturbation technique. The self-assembly of composite structures from nanocomponents with internal atomic structure is analyzed and growth rates are derived. Applications include the assembly of a viral capsid from capsomers, a ribosome from its major subunits, and composite materials from fibers and nanoparticles. Our approach overcomes errors in other coarse-graining methods which neglect the influence of the nanoscale configuration on ...

  19. Application of virtual material in joint surface of complex assembled structures

    Institute of Scientific and Technical Information of China (English)

    崔志琴; 景银萍

    2008-01-01

    In order to acquire the dynamic characteristics of joint surfaces of complex assembled structures, a novel parameter identification technique was adopted. Virtual materials were introduced to simulate the stiffness and damping features of the joint surfaces between two different structures. Properties of the virtual materials, including elasticity modulus, density, and Poisson ratio, were gradually modified. At last, FEM modal results of the assembled structures are consistent with the experimental ones. This proves the feasibility of the simulating method and paves a solid foundation of the further research of the dynamic simulation.

  20. Creating Prebiotic Sanctuary: Self-Assembling Supramolecular Peptide Structures Bind and Stabilize RNA

    Science.gov (United States)

    Carny, Ohad; Gazit, Ehud

    2011-04-01

    Any attempt to uncover the origins of life must tackle the known `blind watchmaker problem'. That is to demonstrate the likelihood of the emergence of a prebiotic system simple enough to be formed spontaneously and yet complex enough to allow natural selection that will lead to Darwinistic evolution. Studies of short aromatic peptides revealed their ability to self-assemble into ordered and stable structures. The unique physical and chemical characteristics of these peptide assemblies point out to their possible role in the origins of life. We have explored mechanisms by which self-assembling short peptides and RNA fragments could interact together and go through a molecular co-evolution, using diphenylalanine supramolecular assemblies as a model system. The spontaneous formation of these self-assembling peptides under prebiotic conditions, through the salt-induced peptide formation (SIPF) pathway was demonstrated. These peptide assemblies possess the ability to bind and stabilize ribonucleotides in a sequence-depended manner, thus increase their relative fitness. The formation of these peptide assemblies is dependent on the homochirality of the peptide monomers: while homochiral peptides (L-Phe-L-Phe and D-Phe-D-Phe) self-assemble rapidly in aqueous environment, heterochiral diastereoisomers (L-Phe-D-Phe and D-Phe-L-Phe) do not tend to self-assemble. This characteristic consists with the homochirality of all living matter. Finally, based on these findings, we propose a model for the role of short self-assembling peptides in the prebiotic molecular evolution and the origin of life.

  1. Formation of the self-assembled structures by the ultrasonic cavitation erosion-corrosion effect on carbon steel

    OpenAIRE

    Dayun Yan; Jiadao Wang; Fengbin Liu; Kenan Rajjoub

    2015-01-01

    The cavitation erosion-corrosion effect on the metal surface always forms irregular oxide structures. In this study, we reported the formation of regular self-assembled structures of amorphous nanoparticles around the cavitation erosion pits on carbon steel upon the ultrasonic cavitation in methylene blue solution. Each self-assembled structure was composed of linearly aligned nanoparticles of about 100 nm. The formation of self-assembled structures might be due to the combined effect of corr...

  2. Fuel nozzle assembly for use as structural support for a duct structure in a combustor of a gas turbine engine

    Science.gov (United States)

    Wiebe, David J; Fox, Timothy A

    2015-03-31

    A fuel nozzle assembly for use in a combustor apparatus of a gas turbine engine. An outer housing of the fuel nozzle assembly includes an inner volume and provides a direct structural connection between a duct structure and a fuel manifold. The duct structure defines a flow passage for combustion gases flowing within the combustor apparatus. The fuel manifold defines a fuel supply channel therein in fluid communication with a source of fuel. A fuel injector of the fuel nozzle assembly is provided in the inner volume of the outer housing and defines a fuel passage therein. The fuel passage is in fluid communication with the fuel supply channel of the fuel manifold for distributing the fuel from the fuel supply channel into the flow passage of the duct structure.

  3. Exact Length Distribution of Filamentous Structures Assembled from a Finite Pool of Subunits.

    Science.gov (United States)

    Harbage, David; Kondev, Jané

    2016-07-01

    Self-assembling filamentous structures made of protein subunits are ubiquitous in cell biology. These structures are often highly dynamic, with subunits in a continuous state of flux, binding to and falling off of filaments. In spite of this constant turnover of their molecular parts, many cellular structures seem to maintain a well-defined size over time, which is often required for their proper functioning. One widely discussed mechanism of size regulation involves the cell maintaining a finite pool of protein subunits available for assembly. This finite pool mechanism can control the length of a single filament by having assembly proceed until the pool of free subunits is depleted to the point when assembly and disassembly are balanced. Still, this leaves open the question of whether the same mechanism can provide size control for multiple filamentous structures that are assembled from a common pool of protein subunits, as is often the case in cells. We address this question by solving the steady-state master equation governing the stochastic assembly and disassembly of multifilament structures made from a shared finite pool of subunits. We find that, while the total number of subunits within a multifilament structure is well-defined, individual filaments within the structure have a wide, power-law distribution of lengths. We also compute the phase diagram for two multifilament structures competing for the same pool of subunits and identify conditions for coexistence when both have a well-defined size. These predictions can be tested in cell experiments in which the size of the subunit pool or the number of filament nucleators is tuned.

  4. The structural parameters of self-assembled quantum dots determined from the optical spectra

    Energy Technology Data Exchange (ETDEWEB)

    Hong, Boon Hon; Beaumont, Matthew; Rybchenko, Sergey I.; Itskevich, Igor E.; Haywood, Stephanie K. [Department of Engineering, University of Hull, Cottingham Road, Hull, HU6 7RX (United Kingdom); Tinkler, Lloyd [Department of Engineering, University of Hull, Cottingham Road, Hull, HU6 7RX, UK and Department of Physics and Astronomy, University of Sheffield, Hounsfield Road, Sheffield, S3 7RH (United Kingdom); Hugues, Maxime [CRHEA-CNRS, Rue Bernard Grégory, 06560 Valbonne (France)

    2013-12-04

    Structural parameters of InGaAs/GaAs self-assembled quantum dots (SAQDs), which were grown using In-flush technique, were deduced using optical spectroscopy combined with computer modeling. The results are in excellent agreement with the experimental data obtained from transmission electron microscopy. The developed approach suggests a promising alternative to structural characterization methods for SAQDs.

  5. Spectrographic approach for the diagnosis of rf breakdown in accelerating rf structures

    Energy Technology Data Exchange (ETDEWEB)

    Tomizawa, H.; Taniuchi, T.; Hanaki, H.; Igarashi, Y.; Yamaguchi, S.; Enomoto, A

    2004-07-31

    The acceleration gradient of an electron linac is limited by rf breakdown in its accelerating structure. We applied an imaging spectrograph system to study the mechanism of rf breakdown phenomena in accelerating rf structures. Excited gases released from the surface emit light during rf breakdown with the type of gases dependent upon surface treatments and rinsing methods. To study rf breakdown, we used 2-m-long accelerating structures and investigated the effects of a high-pressure ultrapure water rinsing (HPR) treatment applied to these rf structures. We performed experiments to study the gases released from the surface of rf structures with quadrupole mass spectroscopy and imaging spectrography of atomic lines. As a result, just after rf breakdown, we could observe instantly increasing signals at mass numbers 2 (H{sub 2}), 28 (CO), and 44 (CO{sub 2}), but not 18 (H{sub 2}O). We also conducted spectral imaging of the light emissions from the atoms and ions in a vacuum excited through rf breakdown. Using an accelerating structure without HPR treatment, we observed atomic lines at 511 nm (Cu I), 622 nm (Cu II), and 711 nm (C I). With HPR treatment, the atomic lines were observed at 395 nm (O I), 459 nm (O II), 511 nm (Cu I), 538 nm (C I), 570 nm (Cu I), 578 nm (Cu I), 656 nm (H: Balmer alpha), and 740 nm (Cu II). In an additional surface analysis, we found carbon as the most dominant element, with the exception of copper, on the blackened surface of the rf-conditioned accelerating structure without HPR treatment. Based on these experiments, we concluded that some components of the plasma can affect a copper surface. We also have provided a phenomenological review of our experimental results and a simple explanation of rf conditioning with rf breakdown.

  6. Spectrographic approach for the diagnosis of rf breakdown in accelerating rf structures

    International Nuclear Information System (INIS)

    The acceleration gradient of an electron linac is limited by rf breakdown in its accelerating structure. We applied an imaging spectrograph system to study the mechanism of rf breakdown phenomena in accelerating rf structures. Excited gases released from the surface emit light during rf breakdown with the type of gases dependent upon surface treatments and rinsing methods. To study rf breakdown, we used 2-m-long accelerating structures and investigated the effects of a high-pressure ultrapure water rinsing (HPR) treatment applied to these rf structures. We performed experiments to study the gases released from the surface of rf structures with quadrupole mass spectroscopy and imaging spectrography of atomic lines. As a result, just after rf breakdown, we could observe instantly increasing signals at mass numbers 2 (H2), 28 (CO), and 44 (CO2), but not 18 (H2O). We also conducted spectral imaging of the light emissions from the atoms and ions in a vacuum excited through rf breakdown. Using an accelerating structure without HPR treatment, we observed atomic lines at 511 nm (Cu I), 622 nm (Cu II), and 711 nm (C I). With HPR treatment, the atomic lines were observed at 395 nm (O I), 459 nm (O II), 511 nm (Cu I), 538 nm (C I), 570 nm (Cu I), 578 nm (Cu I), 656 nm (H: Balmer alpha), and 740 nm (Cu II). In an additional surface analysis, we found carbon as the most dominant element, with the exception of copper, on the blackened surface of the rf-conditioned accelerating structure without HPR treatment. Based on these experiments, we concluded that some components of the plasma can affect a copper surface. We also have provided a phenomenological review of our experimental results and a simple explanation of rf conditioning with rf breakdown

  7. Probing structural changes of self assembled i-motif DNA

    KAUST Repository

    Lee, Iljoon

    2015-01-01

    We report an i-motif structural probing system based on Thioflavin T (ThT) as a fluorescent sensor. This probe can discriminate the structural changes of RET and Rb i-motif sequences according to pH change. This journal is

  8. Nanoscale superstructures assembled by polymerase chain reaction (PCR): programmable construction, structural diversity, and emerging applications.

    Science.gov (United States)

    Kuang, Hua; Ma, Wei; Xu, Liguang; Wang, Libing; Xu, Chuanlai

    2013-11-19

    Polymerase chain reaction (PCR) is an essential tool in biotechnology laboratories and is becoming increasingly important in other areas of research. Extensive data obtained over the last 12 years has shown that the combination of PCR with nanoscale dispersions can resolve issues in the preparation DNA-based materials that include both inorganic and organic nanoscale components. Unlike conventional DNA hybridization and antibody-antigen complexes, PCR provides a new, effective assembly platform that both increases the yield of DNA-based nanomaterials and allows researchers to program and control assembly with predesigned parameters including those assisted and automated by computers. As a result, this method allows researchers to optimize to the combinatorial selection of the DNA strands for their nanoparticle conjugates. We have developed a PCR approach for producing various nanoscale assemblies including organic motifs such as small molecules, macromolecules, and inorganic building blocks, such as nanorods (NRs), metal, semiconductor, and magnetic nanoparticles (NPs). We start with a nanoscale primer and then modify that building block using the automated steps of PCR-based assembly including initialization, denaturation, annealing, extension, final elongation, and final hold. The intermediate steps of denaturation, annealing, and extension are cyclic, and we use computer control so that the assembled superstructures reach their predetermined complexity. The structures assembled using a small number of PCR cycles show a lower polydispersity than similar discrete structures obtained by direct hybridization between the nanoscale building blocks. Using different building blocks, we assembled the following structural motifs by PCR: (1) discrete nanostructures (NP dimers, NP multimers including trimers, pyramids, tetramers or hexamers, etc.), (2) branched NP superstructures and heterochains, (3) NP satellite-like superstructures, (4) Y-shaped nanostructures and DNA

  9. Structural transformation of peptide amphiphile self-assembly induced by headgroup charge and size regulation

    Science.gov (United States)

    Gao, Changrui; Bedzyk, Michael; Olvera, Monica; Kewalramani, Sumit; Palmer, Liam

    The ability to control the nano and the meso-scale architecture of molecular assemblies is one of the major challenges in nanoscience. Significantly, structural transformations of amphiphilic aggregates induced by variations in environmental conditions have attracted attention due to their biotechnological relevance. Here, we study the assembly in aqueous solution for a modular series of peptide amphiphiles with 3, 2 or 1 lysine groups conjugated to a C16 carbon tail (C16K3, C16K2 and C16K1) . This system design allow us to probe how the equilibrium structure of the self-assembly can be tuned by controlling the coupling between steric (via choice of headgroup: K3, K2, or K1) and electrostatic (via solution pH) interactions. Solution small- and wide-angle X-ray scattering (SAXS/WAXS) and transmission electron microscopy (TEM) studies reveal that depending on pH and number of lysines in the lipid headgroup, amphiphiles can assemble into a range of structures: spherical micelles, bilayer ribbons and vesicles. We also perform detailed phase space mapping of pH-and headgroup size dependency of the structures of assembly over 0.1-100 nm length scales via SAXS/WAXS. The experimental results in conjunction with molecular dynamics (MD) simulations deduce quantitative relations between pH-dependent molecular charges, steric constraints and self-assembly morphologies, which is significant for developing experimental routes to obtain assembly structures with specific nano- and meso-scale features through controlled external stimuli.

  10. Structure and Interaction in 2D Assemblies of Tobacco Mosaic Viruses

    Energy Technology Data Exchange (ETDEWEB)

    Fukuto, M.; Yang, L.; Wang, S.; Fukuto, M.; Checco, A.; Niu, Z.; Wang, Q.

    2009-12-07

    We created two-dimensional (2D) assemblies of tobacco mosaic viruses (TMVs) and characterized their structures using Atomic Force Microscopy (AFM) and X-ray scattering. The TMVs were adsorbed on an oppositely charged, fluid lipid monolayer supported by a solid substrate and submerged in a buffer solution. The lipid monolayer confined the viral particles within a plane, while providing them with lateral mobility so that overall the TMV assembly behaved like a 2D liquid. We controlled the inter-particle interaction by adjusting the chemical condition in the buffer to induce ordered TMV assemblies. We found that the presence of the lipid layer was essential for forming ordered TMV assemblies. Packed TMV assemblies formed on the lipid layer, with an average inter-particle spacing of 42 nm. By introducing Ca{sup 2+} ions into the buffer solution, we were able to improve the in-plane order within the TMV assemblies and reduce the average inter-particle spacing to 20 nm, compared to the TMV diameter of 18 nm. Quantitative analysis of the X-ray scattering data shows that the structural order within the TMV assemblies prepared under a Ca{sup 2+}-free buffer solution is consistent with purely repulsive, electrostatic inter-particle interaction. In contrast, the structural order within Ca{sup 2+}-induced TMV assemblies is consistent with the behavior of a fluid of sticky rods, implying the presence of a strong attraction between TMVs. In addition to the screening of Coulomb repulsion, this behavior is likely the result of counterion-induced as well as membrane-mediated attractions.

  11. Structure and interaction in 2D assemblies of tobacco mosaic viruses

    Energy Technology Data Exchange (ETDEWEB)

    Yang, L.; Wang. S.; Masafumi, F.; Checco, A.; Zhongwei, N.; Wang, Q.

    2009-08-27

    We created two-dimensional (2D) assemblies of tobacco mosaic viruses (TMVs) and characterized their structures using Atomic Force Microscopy (AFM) and X-ray scattering. The TMVs were adsorbed on an oppositely charged, fluid lipid monolayer supported by a solid substrate and submerged in a buffer solution. The lipid monolayer confined the viral particles within a plane, while providing them with lateral mobility so that overall the TMV assembly behaved like a 2D liquid. We controlled the inter-particle interaction by adjusting the chemical condition in the buffer to induce ordered TMV assemblies. We found that the presence of the lipid layer was essential for forming ordered TMV assemblies. Packed TMV assemblies formed on the lipid layer, with an average inter-particle spacing of 42 nm. By introducing Ca2+ ions into the buffer solution, we were able to improve the in-plane order within the TMV assemblies and reduce the average inter-particle spacing to 20 nm, compared to the TMV diameter of 18 nm. Quantitative analysis of the X-ray scattering data shows that the structural order within the TMV assemblies prepared under a Ca{sup 2+}-free buffer solution is consistent with purely repulsive, electrostatic inter-particle interaction. In contrast, the structural order within Ca{sup 2+}-induced TMV assemblies is consistent with the behavior of a fluid of sticky rods, implying the presence of a strong attraction between TMVs. In addition to the screening of Coulomb repulsion, this behavior is likely the result of counterion-induced as well as membrane-mediated attractions.

  12. H-mode accelerating structures with permanent-magnet quadrupole beam focusing

    Science.gov (United States)

    Kurennoy, S. S.; Rybarcyk, L. J.; O'Hara, J. F.; Olivas, E. R.; Wangler, T. P.

    2012-09-01

    We have developed high-efficiency normal-conducting rf accelerating structures by combining H-mode resonator cavities and a transverse beam focusing by permanent-magnet quadrupoles (PMQ), for beam velocities in the range of a few percent of the speed of light. The shunt impedance of interdigital H-mode (IH-PMQ) structures is 10-20 times higher than that of a conventional drift-tube linac, while the transverse size is 4-5 times smaller. Results of the combined 3D modeling—electromagnetic computations, multiparticle beam-dynamics simulations with high currents, and thermal-stress analysis—for an IH-PMQ accelerator tank are presented. The accelerating-field profile in the tank is tuned to provide the best propagation of a 50-mA deuteron beam using coupled iterations of electromagnetic and beam-dynamics modeling. Measurements of a cold model of the IH-PMQ tank show a good agreement with the calculations. Examples of cross-bar H-mode structures with PMQ focusing for higher beam velocities are also presented. H-PMQ accelerating structures following a short radio-frequency quadrupole accelerator can be used both in the front end of ion linacs or in stand-alone applications.

  13. Diamond field emitter array cathodes and possibilities for employing additive manufacturing for dielectric laser accelerating structures

    Energy Technology Data Exchange (ETDEWEB)

    Simakov, Evgenya Ivanovna [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Andrews, Heather Lynn [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Herman, Matthew Joseph [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Hubbard, Kevin Mark [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Weis, Eric [Los Alamos National Lab. (LANL), Los Alamos, NM (United States)

    2016-09-20

    These are slides for a presentation at Stanford University. The outline is as follows: Motivation: customers for compact accelerators, LANL's technologies for laser acceleration, DFEA cathodes, and additive manufacturing of micron-size structures. Conclusions and future plans are: LANL is funded to do dielectric accelerator research starting in FY17; Preliminary studied identified DFEA cathodes as promising sources for DLAs: high beam current and small emittance; Additive manufacturing with Nanoscribe Professional GT can produce structures with the right scale features for a DLA operating at micron wavelengths: Fabrication tolerances need to be studied, DLAs require new materials; We start in October and welcome collaborations: DLA experiment with a beam produced by the DFEA cathode with field emission, demonstration of photoemission from DFEAs, and new structures to print and test.

  14. Structural integrity assessment and stress measurement of CHASNUPP-1 fuel assembly

    Directory of Open Access Journals (Sweden)

    Waseem

    2016-01-01

    Full Text Available Fuel assembly of the PWR nuclear power plant is a long and flexible structure. This study has been made in an attempt to find the structural integrity of the fuel assembly (FA of Chashma Nuclear Power Plant-1 (CHASNUPP-1 at room temperature in air. The non-linear contact and structural tensile analysis have been performed using ANSYS 13.0, in order to determine the fuel assembly (FA elongation behaviour as well as the location and values of the stress intensity and stresses developed in axial direction under applied tensile load of 9800 N or 2 g being the fuel assembly handling or lifting load [Y. Zhang et al., Fuel assembly design report, SNERDI, China, 1994]. The finite element (FE model comprises spacer grids, fuel rods, flexible contacts between the fuel rods and grid's supports system and guide thimbles with dash-pots and flow holes, in addition to the spot welds between spacer grids and guide thimbles, has been developed using Shell181, Conta174 and Targe170 elements. FA is a non-straight structure. The actual behavior of the geometry is non-linear due to its curvature or design tolerance. It has been observed that fuel assembly elongation values obtained through FE analysis and experiment [SNERDI Tech. Doc., Mechanical strength and calculation for fuel assembly, Technical Report, F3.2.1, China, 1994] under applied tensile load are comparable and show approximately linear behaviors. Therefore, it seems that the permanent elongation of fuel assembly may not occur at the specified load. Moreover, the values of stresses obtained at different locations of the fuel assembly are also comparable with the stress values of the experiment determined at the same locations through strain gauges. Since the results of both studies (analytical and experimental are comparable, therefore, validation of the FE methodology is confirmed. The stress intensity of the FE model and maximum stresses developed along the guide thimbles in axial direction are

  15. Self-mapping the longitudinal field structure of a nonlinear plasma accelerator cavity

    Science.gov (United States)

    Clayton, C. E.; Adli, E.; Allen, J.; An, W.; Clarke, C. I.; Corde, S.; Frederico, J.; Gessner, S.; Green, S. Z.; Hogan, M. J.; Joshi, C.; Litos, M.; Lu, W.; Marsh, K. A.; Mori, W. B.; Vafaei-Najafabadi, N.; Xu, X.; Yakimenko, V.

    2016-08-01

    The preservation of emittance of the accelerating beam is the next challenge for plasma-based accelerators envisioned for future light sources and colliders. The field structure of a highly nonlinear plasma wake is potentially suitable for this purpose but has not been yet measured. Here we show that the longitudinal variation of the fields in a nonlinear plasma wakefield accelerator cavity produced by a relativistic electron bunch can be mapped using the bunch itself as a probe. We find that, for much of the cavity that is devoid of plasma electrons, the transverse force is constant longitudinally to within +/-3% (r.m.s.). Moreover, comparison of experimental data and simulations has resulted in mapping of the longitudinal electric field of the unloaded wake up to 83 GV m-1 to a similar degree of accuracy. These results bode well for high-gradient, high-efficiency acceleration of electron bunches while preserving their emittance in such a cavity.

  16. Structure and process design of separated function radio frequency quadruple accelerator

    International Nuclear Information System (INIS)

    The construction features of separated function radio frequency quadrupole(SFRFQ) accelerator are presented, which include the structure of diaphragms electrodes, integral split ring supporting system, cooling system, tuning system and their manufacturing engineering. The analysis with 8753ES network analyzer proves that the tuning system works successfully to tune the SFRFQ frequency at 26.07 MHz as required by the whole acceleration system without significant quality factor declining. The Roentgen spectrum test at high power proves that the inter-vane Jantage can reach higher than the design value of 70 kV. Beam commissioning was carried out to accelerate the O+ ions from 1.03 MeV to 1.65 MeV, which demonstrates that the mechanical design of SFRFQ accelerator can satisfy the experimental demands and the SFRFQ prototype cavity runs stably as designed. (authors)

  17. Latest Development in Superconducting RF Structures for beta=1 Particle Acceleration

    Energy Technology Data Exchange (ETDEWEB)

    Peter Kneisel

    2006-06-26

    Superconducting RF technology is since nearly a decade routinely applied to different kinds of accelerating devices: linear accelerators, storage rings, synchrotron light sources and FEL's. With the technology recommendation for the International Linear Collider (ILC) a year ago, new emphasis has been placed on improving the performance of accelerating cavities both in Q-value and in accelerating gradients with the goal to achieve performance levels close to the fundamental limits given by the material parameters of the choice material, niobium. This paper will summarize the challenges to SRF technology and will review the latest developments in superconducting structure design. Additionally, it will give an overview of the newest results and will report on the developments in alternative materials and technologies.

  18. Design of a choke-mode damped accelerating structure for CLIC Main LINAC

    CERN Document Server

    Shi, J; Grudiev, A; Wuensch, W; Tang, C; Chen, H; Huang, W

    2011-01-01

    Choke-mode damped accelerating structures are being studied as an alternative to the baseline structure of the compact linear collider (CLIC) by a CERN-Tsinghua collaboration. Choke-mode structures hold the potential for much lower levels of pulsed surface heating and, since milling is not needed, reduced cost. Structures with radial choke attached are simulated in GdfidL to investigate the damping of the transverse wake. The first pass-band of the dipole modes is well damped, while the higher order dipole modes are possibly reflected by the choke. Therefore, the geometry of the choke is tuned to minimize the reflection of these higher order dipole modes. Based on this damping scheme, an accelerating structure with the same iris dimensions as the nominal CLIC design but with choke-mode damping has been designed. A prototype structure will be manufactured and high power tested in the near future.

  19. Computation of Eigenmodes in Long and Complex Accelerating Structures by Means of Concatenation Strategies

    CERN Document Server

    Fligsen, T; Van Rienen, U

    2014-01-01

    The computation of eigenmodes for complex accelerating structures is a challenging and important task for the design and operation of particle accelerators. Discretizing long and complex structures to determine its eigenmodes leads to demanding computations typically performed on super computers. This contribution presents an application example of a method to compute eigenmodes and other parameters derived from these eigenmodes for long and complex structures using standard workstation computers. This is accomplished by the decomposition of the complex structure into several single segments. In a next step, the electromagnetic properties of the segments are described in terms of a compact state-space model. Subsequently, the state-space models of the single structures are concatenated to the full structure. The results of direct calculations are compared with results obtained by the concatenation scheme in terms of computational time and accuracy.

  20. Structural basis for proteasome formation controlled by an assembly chaperone nas2.

    Science.gov (United States)

    Satoh, Tadashi; Saeki, Yasushi; Hiromoto, Takeshi; Wang, Ying-Hui; Uekusa, Yoshinori; Yagi, Hirokazu; Yoshihara, Hidehito; Yagi-Utsumi, Maho; Mizushima, Tsunehiro; Tanaka, Keiji; Kato, Koichi

    2014-05-01

    Proteasome formation does not occur due to spontaneous self-organization but results from a highly ordered process assisted by several assembly chaperones. The assembly of the proteasome ATPase subunits is assisted by four client-specific chaperones, of which three have been structurally resolved. Here, we provide the structural basis for the working mechanisms of the last, hereto structurally uncharacterized assembly chaperone, Nas2. We revealed that Nas2 binds to the Rpt5 subunit in a bivalent mode: the N-terminal helical domain of Nas2 masks the Rpt1-interacting surface of Rpt5, whereas its C-terminal PDZ domain caps the C-terminal proteasome-activating motif. Thus, Nas2 operates as a proteasome activation blocker, offering a checkpoint during the formation of the 19S ATPase prior to its docking onto the proteolytic 20S core particle. PMID:24685148

  1. Prediction of welding distortion during assembly process of thin plate structures

    Institute of Scientific and Technical Information of China (English)

    Luo Yu; Deng De'an; Jiang Xiaoling

    2005-01-01

    Ships and automobiles are fabricated from thin plates. To assemble parts, welding is commonly employed.However, welding distortion in large thin-plate panel structure is usually cased by buckling due to the residual stress. In this study, an elastic finite element method for predicting the welding distortion of three-dimensional thin-plate structures with considering welding sequence was proposed. In this method, the inherent strain was employed to model the local shrinkage due to welding itself, and the interface element was introduced to simulate the assembly process. The proposed method was applied to study the influence of welding sequence on the buckling distortion of the large thin-plate panel structure during assembly.

  2. Designed post-self-assembly structural and functional modifications of a truncated tetrahedron.

    Science.gov (United States)

    Zheng, Yao-Rong; Lan, Wen-Jie; Wang, Ming; Cook, Timothy R; Stang, Peter J

    2011-10-26

    Post-self-assembly modifications of a discrete metal-organic supramolecular structure have been developed. Such modifications allow the properties of the self-assembled supramolecular species to be changed in a simple and efficient manner (>90% yield). Initiated by the application of chemical stimuli, the post-self-assembly modifications described herein result in three distinct changes to the supramolecular system: an individual building-block component change, an overall structural modification, and a functional evolution of a [6+4] metal-organic supramolecular structure. The three modifications have been carefully examined by a range of characterization methods, including NMR and UV-vis spectroscopy, electrospray ionization mass spectrometry, pulsed field gradient spin echo NMR measurements, electrochemical analysis, and computational simulations.

  3. Structure of a designed protein cage that self-assembles into a highly porous cube

    Science.gov (United States)

    Lai, Yen-Ting; Reading, Eamonn; Hura, Greg L.; Tsai, Kuang-Lei; Laganowsky, Arthur; Asturias, Francisco J.; Tainer, John A.; Robinson, Carol V.; Yeates, Todd O.

    2014-12-01

    Natural proteins can be versatile building blocks for multimeric, self-assembling structures. Yet, creating protein-based assemblies with specific geometries and chemical properties remains challenging. Highly porous materials represent particularly interesting targets for designed assembly. Here, we utilize a strategy of fusing two natural protein oligomers using a continuous alpha-helical linker to design a novel protein that self assembles into a 750 kDa, 225 Å diameter, cube-shaped cage with large openings into a 130 Å diameter inner cavity. A crystal structure of the cage showed atomic-level agreement with the designed model, while electron microscopy, native mass spectrometry and small angle X-ray scattering revealed alternative assembly forms in solution. These studies show that accurate design of large porous assemblies with specific shapes is feasible, while further specificity improvements will probably require limiting flexibility to select against alternative forms. These results provide a foundation for the design of advanced materials with applications in bionanotechnology, nanomedicine and material sciences.

  4. AC loss measurements in HTS coil assemblies with hybrid coil structures

    Science.gov (United States)

    Jiang, Zhenan; Long, Nicholas J.; Staines, Mike; Badcock, Rodney A.; Bumby, Chris W.; Buckley, Robert G.; Amemiya, Naoyuki

    2016-09-01

    Both AC loss and wire cost in coil windings are critical factors for high temperature superconductor (HTS) AC machinery applications. We present AC loss measurement results in three HTS coil assemblies at 77 K and 65 K which have a hybrid coil structure comprising one central winding (CW) and two end windings (EWs) wound with ReBCO and BSCCO wires with different self-field I c values at 77 K. All AC loss results in the coil assemblies are hysteretic and the normalized AC losses in the coil assemblies at different temperatures can be scaled with the I c value of the coil assemblies. The normalised results show that AC loss in a coil assembly with BSCCO CW can be reduced by using EWs wound with high I c ReBCO wires, whilst further AC loss reduction can be achieved by replacing the BSCCO CW with ReBCO CW. The results imply that a flexible hybrid coil structure is possible which considers both AC loss and wire cost in coil assemblies.

  5. Three-dimensional dielectric photonic crystal structures for laser-driven acceleration

    CERN Document Server

    Cowan, Benjamin M

    2007-01-01

    We present the design and simulation of a three-dimensional photonic crystal waveguide for linear laser-driven acceleration in vacuum. The structure confines a synchronous speed-of-light accelerating mode in both transverse dimensions. We report the properties of this mode, including sustainable gradient and optical-to-beam efficiency. We present a novel method for confining a particle beam using optical fields as focusing elements. This technique, combined with careful structure design, is shown to have a large dynamic aperture and minimal emittance growth, even over millions of optical wavelengths.

  6. Inflatable shape changing colonies assembling versatile smart space structures

    Science.gov (United States)

    Sinn, Thomas; Hilbich, Daniel; Vasile, Massimiliano

    2014-11-01

    Various plants have the ability to follow the sun with their flowers or leaves during the course of a day via a mechanism known as heliotropism. This mechanism is characterised by the introduction of pressure gradients between neighbouring motor cells in the plant's stem, enabling the stem to bend. By adapting this bio-inspired mechanism to mechanical systems, a new class of smart structures can be created. The developed overall structure is made up of a number of cellular colonies, each consisting of a central pressure source surrounded by multiple cells. After launch, the cellular arrays are deployed in space and are either preassembled or alternatively are attached together during their release or afterwards. A central pressure source is provided by a high-pressure storage unit with an integrated valve, which provides ingress gas flow to the system; the gas is then routed through the system via a sequence of valve operations and cellular actuations, allowing for any desired shape to be achieved within the constraints of the deployed array geometry. This smart structure consists of a three dimensional adaptable cellular array with fluid controlling Micro Electromechanical Systems (MEMS) components enabling the structure to change its global shape. The proposed MEMS components include microvalves, pressure sensors, mechanical interconnect structures, and electrical routing. This paper will also give an overview of the system architecture and shows the feasibility and shape changing capabilities of the proposed design with multibody dynamic simulations. Example applications of this lightweight shape changing structure include concentrators, mirrors, and communications antennas that are able to dynamically change their focal point, as well as substructures for solar sails that are capable of steering through solar winds by altering the sails' subjected area.

  7. Assembly, Loading, and Cool‐down of the FRESCA2 Support Structure

    CERN Document Server

    Muñoz Garcia, J E; Ziemianski, D T; Rondeaux, F; de Rijk, G; Bajas, H; Rifflet, J M; Perez, J C; Durante, M; Charrondiere, M; Bajko, M; Devaux, M; Guinchard, M; Ferracin, P; Fessia, P; Manil, P

    2014-01-01

    This paper reports on the assembly process and cool-down to cryogenic temperature of the support structure of FRESCA2, which is a dipole magnet for upgrading the actual CERN cable test facility FRESCA. The structure of the FRESCA2 magnet is designed to provide the adequate pre-stress, through the use of keys, bladders, and an Al alloy shrinking cylinder. In order to qualify the assembly and loading procedures, the structure was assembled with Al blocks (dummy coils) that replaced the brittle Nb3Sn coils, and then cooled-down to 77 K with liquid nitrogen. The evolution of the mechanical behaviour was monitored via strain gauges located on different components of the structure (shell, rods, yokes and dummy coils). We focus on the expected stresses within the structure after assembly, loading and cool-down. The expected stresses were determined from the 3D finite element model of the structure. A comparison of the 3D model stress predictions with the strain gauge data measurements is made. The coherence between ...

  8. From structure to function : Protein assemblies dissected by mass spectrometry

    NARCIS (Netherlands)

    Lorenzen, K.

    2008-01-01

    This thesis demonstrates some of the possibilities mass spectrometry can provide to gain new insight into structure and function of protein complexes. While technologies in native mass spectrometry are still under development, it already allows research on complete proteins and protein complexes up

  9. An Ag(I) energetic metal-organic framework assembled with the energetic combination of furazan and tetrazole: synthesis, structure and energetic performance.

    Science.gov (United States)

    Qu, Xiao-Ni; Zhang, Sheng; Wang, Bo-Zhou; Yang, Qi; Han, Jing; Wei, Qing; Xie, Gang; Chen, San-Ping

    2016-04-28

    A novel Ag(I) energetic MOF [Ag16(BTFOF)9]n·[2(NH4)]n () assembled with Ag(iI ions and a furazan derivative, 4,4'-oxybis[3,3'-(1H-5-tetrazol)]furazan (H2BTFOF) was successfully synthesized and structurally characterized, featuring a three-dimensional porous structure incorporating ammonium cations. The thermal stability and energetic properties were determined, revealing that the 3D energetic MOF had an outstanding insensitivity (IS > 40 J), an ultrahigh detonation pressure (P) of 65.29 GPa and a detonation velocity (D) of 11.81 km cm(-3). In addition, the self-accelerating decomposition temperature (TSADT) and the critical temperature of thermal explosion (Tb) are also discussed in detail. The finding exemplifies that the assembly strategy plays a decisive role in the density and energetic properties of MOF-based energetic materials.

  10. Automated Eukaryotic Gene Structure Annotation Using EVidenceModeler and the Program to Assemble Spliced Alignments

    Energy Technology Data Exchange (ETDEWEB)

    Haas, B J; Salzberg, S L; Zhu, W; Pertea, M; Allen, J E; Orvis, J; White, O; Buell, C R; Wortman, J R

    2007-12-10

    EVidenceModeler (EVM) is presented as an automated eukaryotic gene structure annotation tool that reports eukaryotic gene structures as a weighted consensus of all available evidence. EVM, when combined with the Program to Assemble Spliced Alignments (PASA), yields a comprehensive, configurable annotation system that predicts protein-coding genes and alternatively spliced isoforms. Our experiments on both rice and human genome sequences demonstrate that EVM produces automated gene structure annotation approaching the quality of manual curation.

  11. Role of rf electric and magnetic fields in heating of micro-protrusions in accelerating structures

    CERN Document Server

    Nusinovich, Gregory S

    2011-01-01

    It is known that high-gradient operation in metallic accelerating structures causes significant deterioration of structure surfaces that, in turn, greatly increases the probability of microwave breakdown. At the same time, the physical reason for this deterioration so far is not well understood. In the present paper, the role of two effects is analyzed, viz. (a) the microwave heating caused by penetration of the rf magnetic field into microprotrusion of a radius on the order of the skin depth and (b) the Joule heating caused by the field emitted current, i.e. the effect of the rf electric field magnified by a sharp protrusion. Corresponding expressions for the power densities of both effects are derived and the criterion for evaluating the dominance of one of these two is formulated. This criterion is analyzed and illustrated by the discussion of an example with parameters typical for recent experiments at the Stanford Linear Accelerator Center (SLAC) National Accelerator Laboratory.

  12. Engineering design and fabrication of tapered damped X-Band accelerating structures

    CERN Document Server

    Solodko, A; Gudkov, D; Riddone, G; Grudiev, A; Atieh, S; Taborelli, M

    2011-01-01

    The accelerating structures (AS) are one of the main components of the Compact LInear Collider (CLIC), under study at CERN. Each accelerating structure contains about 30 copper discs, which form the accelerating cavity. The requirements of different technical systems, such as vacuum and cooling, have to be considered during the engineering design. A fully featured AS is very challenging and requires several technologies. Different damping methods, waveguides, vacuum manifolds, slots and chokes, result in various design configurations. In the CLIC AS each cell is damped by means of four waveguides coupled to the cell. The vacuum manifolds combine a number of functions such as damping, vacuum pumping and cooling. A silicon carbide absorber, fixed inside of each manifold, is required for effective damping of Higher Order Modes (HOMs). This paper describes the engineering design of the X-band AS with damping material, and focuses on few technical solutions.

  13. Capturing Structural Dynamics in Crystalline Silicon Using Chirped Electrons from a Laser Wakefield Accelerator

    CERN Document Server

    He, Z -H; Nees, J A; Gallé, G; Scott, S A; Pérez, J R Sanchez; Lagally, M G; Krushelnick, K; Thomas, A G R; Faure, J

    2016-01-01

    Recent progress in laser wakefield acceleration has led to the emergence of a new generation of electron and X-ray sources that may have enormous benefits for ultrafast science. These novel sources promise to become indispensable tools for the investigation of structural dynamics on the femtosecond time scale, with spatial resolution on the atomic scale. Here, we demonstrate the use of laser-wakefield-accelerated electron bunches for time-resolved electron diffraction measurements of the structural dynamics of single-crystal silicon nano-membranes pumped by an ultrafast laser pulse. In our proof-of-concept study, we resolve the silicon lattice dynamics on a picosecond time scale by deflecting the momentum-time correlated electrons in the diffraction peaks with a static magnetic field to obtain the time-dependent diffraction efficiency. Further improvements may lead to femtosecond temporal resolution, with negligible pump-probe jitter being possible with future laser-wakefield-accelerator ultrafast-electron-di...

  14. X-Band Photonic Band-Gap Accelerator Structure Breakdown Experiment

    Energy Technology Data Exchange (ETDEWEB)

    Marsh, Roark A.; /MIT /MIT /NIFS, Gifu /JAERI, Kyoto /LLNL, Livermore; Shapiro, Michael A.; Temkin, Richard J.; /MIT; Dolgashev, Valery A.; Laurent, Lisa L.; Lewandowski, James R.; Yeremian, A.Dian; Tantawi, Sami G.; /SLAC

    2012-06-11

    In order to understand the performance of photonic band-gap (PBG) structures under realistic high gradient, high power, high repetition rate operation, a PBG accelerator structure was designed and tested at X band (11.424 GHz). The structure consisted of a single test cell with matching cells before and after the structure. The design followed principles previously established in testing a series of conventional pillbox structures. The PBG structure was tested at an accelerating gradient of 65 MV/m yielding a breakdown rate of two breakdowns per hour at 60 Hz. An accelerating gradient above 110 MV/m was demonstrated at a higher breakdown rate. Significant pulsed heating occurred on the surface of the inner rods of the PBG structure, with a temperature rise of 85 K estimated when operating in 100 ns pulses at a gradient of 100 MV/m and a surface magnetic field of 890 kA/m. A temperature rise of up to 250 K was estimated for some shots. The iris surfaces, the location of peak electric field, surprisingly had no damage, but the inner rods, the location of the peak magnetic fields and a large temperature rise, had significant damage. Breakdown in accelerator structures is generally understood in terms of electric field effects. These PBG structure results highlight the unexpected role of magnetic fields in breakdown. The hypothesis is presented that the moderate level electric field on the inner rods, about 14 MV/m, is enhanced at small tips and projections caused by pulsed heating, leading to breakdown. Future PBG structures should be built to minimize pulsed surface heating and temperature rise.

  15. Observation of multipactor suppression in a dielectric-loaded accelerating structure using an applied axial magnetic field

    Science.gov (United States)

    Jing, C.; Chang, C.; Gold, S. H.; Konecny, R.; Antipov, S.; Schoessow, P.; Kanareykin, A.; Gai, W.

    2013-11-01

    Efforts by a number of institutions to develop a Dielectric-Loaded Accelerating (DLA) structure capable of supporting high gradient acceleration when driven by an external radio frequency source have been ongoing over the past decade. Single surface resonant multipactor has been previously identified as one of the major limitations on the practical application of DLA structures in electron accelerators. In this paper, we report the results of an experiment that demonstrated suppression of multipactor growth in an X-band DLA structure through the use of an applied axial magnetic field. This represents an advance toward the practical use of DLA structures in many accelerator applications.

  16. Observation of multipactor suppression in a dielectric-loaded accelerating structure using an applied axial magnetic field

    Energy Technology Data Exchange (ETDEWEB)

    Jing, C.; Konecny, R.; Antipov, S. [Euclid Techlabs, LLC, 5900 Harper Rd., Solon, Ohio 44139 (United States); High Energy Physics Division, Argonne National Laboratory, Argonne, Illinois 60439 (United States); Chang, C. [Science and Technology on High Power Microwave Laboratory, Xi' an City 710024 (China); Institute of Energy, Tsinghua University, Beijing 100084 (China); Gold, S. H. [Naval Research Laboratory, Plasma Physics Division, Washington, DC 20375 (United States); Schoessow, P.; Kanareykin, A. [Euclid Techlabs, LLC, 5900 Harper Rd., Solon, Ohio 44139 (United States); Gai, W. [High Energy Physics Division, Argonne National Laboratory, Argonne, Illinois 60439 (United States)

    2013-11-18

    Efforts by a number of institutions to develop a Dielectric-Loaded Accelerating (DLA) structure capable of supporting high gradient acceleration when driven by an external radio frequency source have been ongoing over the past decade. Single surface resonant multipactor has been previously identified as one of the major limitations on the practical application of DLA structures in electron accelerators. In this paper, we report the results of an experiment that demonstrated suppression of multipactor growth in an X-band DLA structure through the use of an applied axial magnetic field. This represents an advance toward the practical use of DLA structures in many accelerator applications.

  17. An anisotropic snowflake-like structural assembly of polymer-capped gold nanoparticles

    Energy Technology Data Exchange (ETDEWEB)

    Parab, Harshala; Jung, Cheulhee; Woo, Min-Ah; Park, Hyun Gyu, E-mail: hgpark@kaist.ac.kr [Korea Advanced Institute of Science and Technology, Department of Chemical and Biomolecular Engineering (Korea, Republic of)

    2011-05-15

    Snowflake-like structural assembly of isotropic gold nanoparticles (GNPs) is reported. A modified polyamine method has been employed to synthesize positively charged GNPs in presence of a polymeric metaphosphate. This process yields fascinating dendritic self-assembled morphologies. Structural characterization revealed that there was aggregation of crystalline GNPs. The aggregates of GNPs formed in the initial stage of synthesis are assumed to act as the bulging seeds for final growth of complex morphologies at nanometer to micrometer length scale. Self-assembly of GNPs was found to be greatly influenced by the concentration of gold precursor. Diffusion limited aggregation of GNPs is suggested as the plausible mechanism for this nanoparticle self-organization process.

  18. Experimental Study Of X-band Dielectric-loaded Accelerating Structures

    CERN Document Server

    Jing, C

    2005-01-01

    A joint Argonne National Laboratory (ANL)/Naval Research Laboratory (NRL) program is under way to investigate X- band dielectric-loaded accelerating (DLA) structures, using high-power 11.424GHz radiation from the NRL Magnicon facility. As an advanced accelerator concepts, the dielectric-loaded accelerator offers the potential for a simple, inexpensive alternative to high-gradient RF linear accelerators. In this thesis, a comprehensive account of X-band DLA structure design, including theoretical calculation, numerical simulation, fabrication and testing, is presented in detail. Two types of loading dielectrics, alumina and MgxCa1−xTiO 3 (MCT), are investigated. For alumina (with dielectric constant 9.4), no RF breakdown has been observed up to 5 MW of drive power (equivalent to 8MV/m accelerating gradient) in the high power RF testing at NRL, but multipactor was observed to absorb a large fraction of the incident microwave power. Experimental results on suppression of multipactor using TiN coating o...

  19. Optimum frequency and gradient for the CLIC main linac accelerating structure

    CERN Document Server

    Grudiev, A; Wuensch, Walter

    2006-01-01

    A novel procedure for the optimization of CLIC main linac parameters including operating frequency and the accelerating gradient is presented. The optimization procedure takes into account both beam dynamics and high power rf constraints. Beam dynamics constraints are given by emittance growth due to short- and long-range transverse wakefields. RF constraints are given by rf breakdown and pulsed surface heating limitations of the accelerating structure. Interpolation of beam and structure parameters in a wide range allows hundreds of millions of accelerating structures to be analyzed to find the structure with the highest ratio of luminosity to main linac input power, which is used as the figure of merit. The frequency and gradient have been varied in the ranges 12-30 GHz and 90-150 MV/m respectively. It is shown that the optimum frequency lies in the range from 16 to 20 GHz depending on the accelerating gradient and that the optimum gradient is below 100 MV/m. Based on our current understanding of the constr...

  20. [FeFe]-hydrogenase models assembled into vesicular structures.

    Science.gov (United States)

    Menzel, Kristin; Apfel, Ulf-Peter; Wolter, Nonio; Rüger, Ronny; Alpermann, Theodor; Steiniger, Frank; Gabel, Detlef; Förster, Stephan; Weigand, Wolfgang; Fahr, Alfred

    2014-03-01

    Compartmentalization is a major prerequisite for the origin of life on earth according to Wächtershäuser "Iron-Sulfur-World". The hypothesis is mainly based on an autocatalytic inorganic energy reproducing redox system consisting of iron and sulfur as requirement for the subsequent synthesis of complex organic structures. Here, we modified [FeFe]-hydrogenase models by means of covalent coupling to either oleic acid or the amphiphilic block copolymer polybutadiene-polyethyleneoxide (PB-PEO) and incorporated those into the membranes of vesicles composed of phospholipids (liposomes) or the unmodified amphiphilic polymer (polymersomes). We employed a [2Fe-2S] cluster as a hydrogenase model, since these structures are known to be suitable catalysts for the generation of H2 in the presence of weak acids. Successful incorporation was confirmed by spectrophotometric iron quantification and the vesicles formed were characterized by size determination (photon correlation spectroscopy (PCS)), and zeta potential as well as by cryo-transmission electron microscopy (Cryo-TEM). The modified models could be incorporated into liposomes or polymersomes up to molar proportions of 3.15% and 28%, respectively. Due to the immobilization in vesicular bilayers the [FeFe]-hydrogenase models can even exhibit catalytic action under the particular conditions of the intravesicular microenvironment. Our results suggest that the vesicular systems described may be applied as a nanoreactor for the reduction of encapsulated substances by generating hydrogen and thus as a minimal cell model.

  1. Progress on High Power Tests of Dielectric-Loaded Accelerating Structures

    CERN Document Server

    Jing, Chunguang; Gold, Steven H; Kinkead, Allen; Konecny, Richard; Power, John G

    2005-01-01

    This paper presents a progress report on a series of high-power rf experiments that were carried out to evaluate the potential of the Dielectric-Loaded Accelerating (DLA) structure for high-gradient accelerator operation. Since the last PAC meeting in 2003, we have tested DLA structures loaded with two different ceramic materials: Alumina (Al2O3) and MCT (MgxCa1-xTiO3). The alumina-based DLA experiments have concentrated on the effects of multipactor in the structures under high-power operation, and its suppression using TiN coatings, while the MCT experiments have investigated the dielectric joint breakdown observed in the structures due to local field enhancement. In both cases, physical models have been set up, and the potential engineering solutions are being investigated.

  2. Expanding the structural diversity of self-assembling dendrons and supramolecular dendrimers via complex building blocks.

    Science.gov (United States)

    Percec, Virgil; Won, Betty C; Peterca, Mihai; Heiney, Paul A

    2007-09-12

    The design and synthesis of the first examples of AB4 and AB5 dendritic building blocks with complex architecture are reported. Structural and retrostructural analysis of supramolecular dendrimers self-assembled from hybrid dendrons based on different combinations of AB4 and AB5 building blocks with AB2 and AB3 benzyl ether dendrons demonstrated that none of these new hybrid dendrons exhibit the previously encountered conformations of libraries of benzyl ether dendrons. These hybrid dendrons enabled the discovery of some highly unusual tapered and conical dendrons generated by the intramolecular back-folding of their repeat units and of their apex. The new back-folded tapered dendrons have double thickness and self-assemble into pine-tree-like columns exhibiting a long-range 7/2 helical order. The back-folded conical dendrons self-assemble into spherical dendrimers. Non-back-folded truncated conical dendrons were also discovered. They self-assemble into spherical dendrimers with a less densely packed center. The discovery of dendrons displaying a novel crown-like conformation is also reported. Crown-like dendrons self-assemble into long-range 5/1 helical pyramidal columns. The long-range 7/2 and 5/1 helical structures were established by applying, for the first time, the helical diffraction theory to the analysis of X-ray patterns obtained from oriented fibers of supramolecular dendrimers. PMID:17705390

  3. Synthesis of GoldMag particles with assembled structure and their applications in immunoassay

    Institute of Scientific and Technical Information of China (English)

    CUI; Yali; ZHANG; Lianying; SU; Jing; ZHANG; Caifeng; LI; Qi; CUI; Ting; JIN; Boquan; CHEN; Chao

    2006-01-01

    Micrometer-sized Fe3O4 particles and nano-sized gold particles were first synthesized by methods of self-aggregation of surface-chemically modified Fe3O4 nanoparticles and citrate reduction of the Au3+ to Au0, respectively. Interaction between these two types of particles resulted in the assembly of nano-sized gold particles on the surface of the micrometer-sized Fe3O4 particles, forming an assembled structure with the Fe3O4 core particles around which are attached nano-sized gold particles. The Fe3O4/Au structure is named GoldMag particles with assembled structure. The synthetic process, structure, and magnetic property of the GoldMag particles were analyzed. GoldMag particles with assembled structure have an irregular shape, rough surface with a diameter of 2-3 (m. These particles exhibit the superparamagnetic property with saturated magnetization of 41 A·m2/kg. In a single step, antibodies could be readily immobilized onto the surface of the particles with a high binding capacity. The GoldMag particles can be used as a novel carrier in immunoassays. The maximum quantity of human IgG immobilized onto GoldMag particles was 330 (g/mg. In order to validate the quality of the GoldMag particles as immunoassay carriers, an immunoassay system was used. The relative amount of immobilized human IgG was measured by HRP-labeled anti human IgG. The coefficient of variation within parallel samples of each group was below 6% and the coefficient of variation of means between five groups carried out separately was below 7%. Based on the sandwich method, the Hepatitis B surface antigen (HBsAg) and interleukin-8 (IL-8) were also analyzed by qualitative and quantitative detection, respectively. The result indicated that the GoldMag particles with assembled structure were an ideal carrier in immunoassay.

  4. Self-assembled structures of Gaussian nematic particles

    Energy Technology Data Exchange (ETDEWEB)

    Nikoubashman, Arash; Likos, Christos N [Institute of Theoretical Physics, Heinrich Heine University of Duesseldorf, Universitaetsstrasse 1, D-40225 Duesseldorf (Germany)

    2010-03-17

    We investigate the stable crystalline configurations of a nematic liquid crystal made of soft parallel ellipsoidal particles interacting via a repulsive, anisotropic Gaussian potential. For this purpose, we use genetic algorithms (GA) in order to predict all relevant and possible solid phase candidates into which this fluid can freeze. Subsequently we present and discuss the emerging novel structures and the resulting zero-temperature phase diagram of this system. The latter features a variety of crystalline arrangements, in which the elongated Gaussian particles in general do not align with any one of the high-symmetry crystallographic directions, a compromise arising from the interplay and competition between anisotropic repulsions and crystal ordering. Only at very strong degrees of elongation does a tendency of the Gaussian nematics to align with the longest axis of the elementary unit cell emerge.

  5. Future accelerators (?)

    Energy Technology Data Exchange (ETDEWEB)

    John Womersley

    2003-08-21

    I describe the future accelerator facilities that are currently foreseen for electroweak scale physics, neutrino physics, and nuclear structure. I will explore the physics justification for these machines, and suggest how the case for future accelerators can be made.

  6. Linear hydrogen adsorbate structures on graphite induced by self-assembled molecular monolayers

    DEFF Research Database (Denmark)

    Nilsson, Louis; Sljivancanin, Zeljko; Balog, Richard;

    2012-01-01

    Combined scanning tunnelling microscopy measurements and density functional theory calculations reveal a method to induce linear structures of hydrogen adsorbates on graphite by covering the surface with a self-assembled molecular monolayer of cyanuric acid and exposing it to atomic hydrogen...

  7. Pump–probe spectrum of molecular assemblies of arbitrary structure and dimension

    NARCIS (Netherlands)

    Juzeliūnas, Gediminas; Knoester, Jasper

    2000-01-01

    Using the hard-core boson approach, we study the pump-probe spectrum of molecular assemblies carrying Frenkel excitons of arbitrary structure and dimension. We present a rigorous justification of the hard-core boson approach by using the Agranovich–Toshich transformation from paulions to bosons. The

  8. Tissue engineering by self-assembly of cells printed into topologically defined structures.

    Science.gov (United States)

    Jakab, Karoly; Norotte, Cyrille; Damon, Brook; Marga, Francoise; Neagu, Adrian; Besch-Williford, Cynthia L; Kachurin, Anatoly; Church, Kenneth H; Park, Hyoungshin; Mironov, Vladimir; Markwald, Roger; Vunjak-Novakovic, Gordana; Forgacs, Gabor

    2008-03-01

    Understanding the principles of biological self-assembly is indispensable for developing efficient strategies to build living tissues and organs. We exploit the self-organizing capacity of cells and tissues to construct functional living structures of prescribed shape. In our technology, multicellular spheroids (bio-ink particles) are placed into biocompatible environment (bio-paper) by the use of a three-dimensional delivery device (bio-printer). Our approach mimics early morphogenesis and is based on the realization that the genetic control of developmental patterning through self-assembly involves physical mechanisms. Three-dimensional tissue structures are formed through the postprinting fusion of the bio-ink particles, in analogy with early structure-forming processes in the embryo that utilize the apparent liquid-like behavior of tissues composed of motile and adhesive cells. We modeled the process of self-assembly by fusion of bio-ink particles, and employed this novel technology to print extended cellular structures of various shapes. Functionality was tested on cardiac constructs built from embryonic cardiac and endothelial cells. The postprinting self-assembly of bio-ink particles resulted in synchronously beating solid tissue blocks, showing signs of early vascularization, with the endothelial cells organized into vessel-like conduits.

  9. A Structural analysis of M protein in coronavirus assembly and morphology

    DEFF Research Database (Denmark)

    W. Neuman, Benjamin; Kiss, Gabriella; H. Kunding, Andreas;

    2011-01-01

    The M protein of coronavirus plays a central role in virus assembly, turning cellular membranes into workshops where virus and host factors come together to make new virus particles. We investigated how M structure and organization is related to virus shape and size using cryo-electron microscopy...

  10. Monte Carlo study on the self-assembly of nanoparticles into a nanorod structure.

    Science.gov (United States)

    Matin, Mohammad A; Kim, Hyojeong; Saha, Joyanta K; Zhang, Zhengqing; Kim, Jinkwon; Jang, Joonkyung

    2013-09-01

    It is well known that semiconductor nanoparticles (NPs) can assemble into a range of low dimensional structures, such as nanowires, nanorods and nanosheets. In this study, we investigate the self-assembly of CdTe NPs by using Monte Carlo simulation. Using a simple model for the anisotropic interaction of NPs, the present Monte Carlo simulation demonstrated that NPs with large dipole moments assemble spontaneously into a nanorod even if the short range interactions among NPs is isotropic. Interestingly, we found that the present nanorod grew by forming a transient structure which looks similar to a double ring. For NPs similar to CdTe, the dipole-dipole interaction had a dominant effect over van der Waals attractions and steric repulsion on the final structure of the NP aggregates. The simulated rods are similar to those observed in the experimental self-assembly of CdTe NPs. The NPs with relatively small electric dipole moments aggregated into more or less isotropic structures. PMID:24205640

  11. Preferential Acceleration of Coherent Magnetic Structures and Bursty Bulk Flows in Earth's Magnetotail

    CERN Document Server

    Chang, T; Angelopoulos, V; Chang, Tom; Wu, Cheng-chin; Angelopoulos, Vassilis

    2001-01-01

    Observations indicate that the magnetotail convection is turbulent and bi-modal, consisting of fast bursty bulk flows (BBF) and a nearly stagnant background. We demonstrate that this observed phenomenon may be understood in terms of the intermittent interactions, dynamic mergings and preferential accelerations of coherent magnetic structures under the influence of a background magnetic field geometry that is consistent with the development of an X-point mean-field structure.

  12. Effects of rf breakdown on the beam in the Compact Linear Collider prototype accelerator structure

    OpenAIRE

    Palaia, Andrea; Jacewicz, Marek; Ruber, Roger; Ziemann, Volker; Farabolini, Wilfrid

    2013-01-01

    Understanding the effects of rf breakdown in high-gradient accelerator structures on the acceleratedbeam is an extremely relevant aspect in the development of the Compact Linear Collider (CLIC) andis one of the main issues addressed at the Two-beam Test Stand at the CLIC Test Facility 3 at CERN.During a rf breakdown high currents are generated causing parasitic magnetic fields that interact withthe accelerated beam affecting its orbit. The beam energy is also affected because the power is part...

  13. High-throughput SHAPE and hydroxyl radical analysis of RNA structure and ribonucleoprotein assembly.

    Science.gov (United States)

    McGinnis, Jennifer L; Duncan, Caia D S; Weeks, Kevin M

    2009-01-01

    RNA folds to form complex structures vital to many cellular functions. Proteins facilitate RNA folding at both the secondary and tertiary structure levels. An absolute prerequisite for understanding RNA folding and ribonucleoprotein (RNP) assembly reactions is a complete understanding of the RNA structure at each stage of the folding or assembly process. Here we provide a guide for comprehensive and high-throughput analysis of RNA secondary and tertiary structure using SHAPE and hydroxyl radical footprinting. As an example of the strong and sometimes surprising conclusions that can emerge from high-throughput analysis of RNA folding and RNP assembly, we summarize the structure of the bI3 group I intron RNA in four distinct states. Dramatic structural rearrangements occur in both secondary and tertiary structure as the RNA folds from the free state to the active, six-component, RNP complex. As high-throughput and high-resolution approaches are applied broadly to large protein-RNA complexes, other proteins previously viewed as making simple contributions to RNA folding are also likely to be found to exert multifaceted, long-range, cooperative, and nonadditive effects on RNA folding. These protein-induced contributions add another level of control, and potential regulatory function, in RNP complexes.

  14. Small angle scattering examination of structures self-assembled during human breast milk digestion

    International Nuclear Information System (INIS)

    Human breast milk is the critical part of an infant’s diet and the complete diet for a baby’s first months of life. As such, breast milk contains both water soluble and water insoluble components all of which are made bioavailable during digestion to provide everything needed for growth and development. Following the recent discovery of self-assembled structures as bovine milk is digested, a similar progression through a range of different self-assembled structures has been studied during the in-situ digestion of human breast milk. These highly organized structures were studied using small angle scattering to follow the formation and progression of the structures in real time during digestion. Cryo-TEM was also used to study the phases formed. The duration of the digestion, pH and bile salt concentration were found to act together to gradually shift the lipophilic environment inside breast milk fat globules to more hydrophilic surfaces in highly ordered structure with high internal surface area. The formation and transitions in self-assembled structures are likely to be key to making water insoluble species bioavailable in the gastrointestinal tract of the infant. Further small angle scattering studies will allow a greater understanding of how individual components impact the digestion and whether additional species, e.g. adding sparingly soluble vitamins, changes the digestion stages. Understanding the different stages and structures of digestion offers scope to develop improved nutritional supplements or controlled release drug delivery systems for infants.

  15. Rapid excavation with a newly developed retaining system:Spiral assembly steel structure

    Institute of Scientific and Technical Information of China (English)

    关成立; 杨宇友; 王成彪

    2015-01-01

    The spiral assembly steel structure, a newly developed retaining wall for the rapid excavation of small-sized foundation pits in unsaturated soil, is presented. This new type of retaining structure is prefabricated in the factory and is assembled on site in the excavation of a pit. This retaining structure is composed of several prefabricated steel structural units, in which the adjacent steel structural units are joined with connectors. Each steel structural unit has one steel pipe in the radial direction and is welded to a single piece of steel plate. After full installation in situ, the retaining structure becomes a cylindrical steel structure. With the protection afforded by this new type of retaining structure, excavation work can be completed within 24 h to a depth up to 5 m. In order to verify the reliability and effectiveness of this new retaining structure, field construction tests were conducted in Beijing, China. The test construction was monitored. The monitoring program included measuring stress in the structure, lateral earth pressure, and lateral deformation of the surrounding soil. The monitoring data from the field test were compared with the theoretical results. The results show that the proposed new structure is reliable and effective.

  16. Self-Assembled Structures of Colloidal Silver Nanoparticles on Solid Substrates

    Institute of Scientific and Technical Information of China (English)

    LIU Yulan; HE Shengtai; HUANG Keyang

    2011-01-01

    With a two-phase method,well-dispersed 5.2 nm Ag nanoparticles with narrow size distribution (±0.5 nm) are synthesized.The assembled structures of colloidal Ag nanoparticles on highly oriented pyrolytic graphite (HOPG),silicon chip and microscopic glass have been investigated by atomic force microscopy (AFM).With different spin-coating speeds and concentrations of colloidal silver nanoparticles,various assembly structures could form on those substrates.On HOPG,Ag nanoparticles were absorbed and aligned along single-atom-height step edges to form a linear one-layer structure.And on silicon chip and microscopic glass,one-layer closed packing fractal structure and two-layer closed packing ring were observed respectively.

  17. Manipulating the dimensional assembly pattern and crystalline structures of iron oxide nanostructures with a functional polyolefin

    Science.gov (United States)

    He, Qingliang; Yuan, Tingting; Wang, Yiran; Guleria, Abhishant; Wei, Suying; Zhang, Guoqi; Sun, Luyi; Liu, Jingjing; Yu, Jingfang; Young, David P.; Lin, Hongfei; Khasanov, Airat; Guo, Zhanhu

    2016-01-01

    Controlled crystalline structures (α- and γ-phase) and assembly patterns (1-D, 2-D and 3-D) were achieved in the synthesized iron oxide (Fe2O3) nanoparticles (NPs) using polymeric surfactant-polypropylene grafted maleic anhydride (PP-g-MA) with different concentrations. In addition, the change of the crystalline structure from the α- and γ-phase also led to the significantly increased saturation magnetization and coercivity.Controlled crystalline structures (α- and γ-phase) and assembly patterns (1-D, 2-D and 3-D) were achieved in the synthesized iron oxide (Fe2O3) nanoparticles (NPs) using polymeric surfactant-polypropylene grafted maleic anhydride (PP-g-MA) with different concentrations. In addition, the change of the crystalline structure from the α- and γ-phase also led to the significantly increased saturation magnetization and coercivity. Electronic supplementary information (ESI) available. See DOI: 10.1039/c5nr07213a

  18. Double hydrogen bond mediating self-assembly structure of cyanides on metal surface

    Science.gov (United States)

    Wang, Zhongping; Xiang, Feifei; Lu, Yan; Wei, Sheng; Li, Chao; Liu, Xiaoqing; Liu, Lacheng; Wang, Li

    2016-10-01

    Cyanides with different numbers of -C≡N, 1,2,4,5-Tetracyanobenzene (TCNB) and 2,3-Dicyanonaphthalene (2,3-DCN) deposited on Ag(111) and Ag(110) surfaces, have been investigated by room temperature scanning tunneling microscopy (RTSTM), respectively. High resolution STM images show double hydrogen bond is the main driving force to form variety of self-assembly structures, indicating the double hydrogen bond affects the electron distribution of cyanides and leads to a more stable structure with lower energy. In addition, the difference between Ag(111) and Ag(110) surfaces in their lattice structure induces a bigger assembly structural change of 2,3-DCN than that of 1,2,4,5-TCNB, which confirms the fact that the opposite double hydrogen bond formation formed by 1,2,4,5-TCNB is more stable than the neighboring double hydrogen bond formation formed by molecule 2,3-DCN.

  19. H-mode Accelerating Structures with PMQ Focusing for Low-Beta Beams

    Energy Technology Data Exchange (ETDEWEB)

    Kurennoy, Sergey S. [Los Alamos National Laboratory; O' Hara, James F. [Los Alamos National Laboratory; Olivas, Eric R. [Los Alamos National Laboratory; Rybarcyk, Lawrence J. [Los Alamos National Laboratory

    2011-01-01

    We report on results of the project developing high-efficiency normal-conducting RF accelerating structures based on inter-digital H-mode (IH) cavities and the transverse beam focusing with permanent-magnet quadrupoles (PMQ), for beam velocities in the range of a few percent of the speed of light. The shunt impedance of IH-PMQ structures is 10-20 times higher than that of a conventional drift-tube linac, while the transverse size is 4-5 times smaller. The H-PMQ accelerating structures following a short RFQ can be used both in the front end of ion linacs or in stand-alone applications. Results of the combined 3-D modeling -- electromagnetic computations, beam-dynamics simulations with high currents, and thermal-stress analysis -- for a full IH-PMQ accelerator tank are presented. The accelerating field profile in the tank is tuned to provide the best propagation of a 50-mA deuteron beam using coupled iterations of EM and beamdynamics modeling. Multi-particle simulations withParmela and CST Particle Studio have been used to confirm the design. Measurement results of a cold model of the IH-PMQ tank are presented.

  20. Structural changes in mature rat thymus under the systematic exposure to +Gx acceleration and Glutarginum

    Directory of Open Access Journals (Sweden)

    Maxim A. Kriventsov

    2013-04-01

    Full Text Available Objective: Experimental work was designed primary to study morphological and functional changes in the mature rat's thymus under systematic exposure to +Gx acceleration. Secondary task is to determine a possible corrective potential of Glutarginum (L-arginine and L-glutamic acid. Methods: Mature male Wistar rats were exposed to systematic +Gx acceleration (9G, 10 min daily, 10 times. Morphology of the thymus was investigated by light and transmission electron microscopy. Results: Analysis of changes in the thymus of the mature rats under systematic exposure to +Gx acceleration showed marked structural transformation, which is characterized by a process of accidental involution and microcirculatory disturbances caused by the systematic action of gravitational forces. Such changes were potentiated by the age-related involution. Proliferation and expanding of the connective tissue structures, replacement of the parenchyma by the adipose tissue, degeneration of the epithelial component are characteristics of mature rat's thymus. At the same time, histoarchitecture of the thymus was characterized by typical stress-induced changes. Concomitant usage of Glutarginum promotes less pronounced circulatory injuries and involutive changes than in the experiments without Glutarginum treatment. Conclusion: Systematic action of +Gx acceleration causes significant alteration of normal structural organisation of the thymus of the matured rats. Using L-arginine + L-glutamate increases the adaptive capacity of the thymus. [J Exp Integr Med 2013; 3(2.000: 87-92

  1. Experimental and Computational Study of Acceleration Response in Layered Cylindrical Structure Considering Impedance Mismatch Effect

    Directory of Open Access Journals (Sweden)

    Sachiko Sueki

    2011-01-01

    Full Text Available Electronic devices, especially those having high performance capabilities, are sensitive to mechanical shocks and vibrations. Failure of such devices in smart projectiles caused by vibrations has been observed. The currently accepted methodology to protect electronic devices in smart projectiles is use of stiffeners and dampers. However these methods are not effective in protecting the electronic devices from high frequency accelerations in excess of 5,000 Hz. Therefore, it is important to find more effective methods to reduce high frequency vibrations for smart projectiles. In this study, layered cylindrical structures are studied experimentally and computationally to understand the effect of impedance mismatch in axial acceleration response under an impact loading. Experiments are conducted by applying impact forces at one end of cylindrical structures and measuring accelerations at the other end. Experimental results suggest that high frequency accelerations in layered structures could be less compared to those in homogeneous cylinders if a returning wave from the end of the projectile does not interfere with the applied impact force. Computational studies using finite element analysis (FEA verified the experimental results of our interference hypothesis.

  2. Management of research reactor; dynamic characteristics analysis for reactor structures related with vibration of HANARO fuel assembly

    Energy Technology Data Exchange (ETDEWEB)

    Ahn, Chang Kee; Shim, Joo Sup [Shinwa Technology Information, Seoul (Korea)

    2001-04-01

    The objective of this study is to deduce the dynamic correlation between the fuel assembly and the reactor structure. Dynamic characteristics analyses for reactor structure related with vibration of HANARO fuel assembly have been performed For the dynamic characteristic analysis, the in-air models of the round and hexagonal flow tubes, 18-element and 36-element fuel assemblies, and reactor structure were developed. By calculating the hydrodynamic mass and distributing it on the in-air models, the in-water models of the flow tubes, the fuel assemblies, and the reactor structure were developed. Then, modal analyses for developed in-air and in-water models have been performed. Especially, two 18-element fuel assemblies and three 36-element fuel assemblies were included in the in-water reactor models. For the verification of the modal analysis results, the natural frequencies and the mode shapes of the fuel assembly were compared with those obtained from the experiment. Finally the analysis results of the reactor structure were compared with them performed by AECL Based on the reactor model without PCS piping, the in-water reactor model including the fuel assemblies was developed, and its modal analysis was performed. The analysis results demonstrate that there are no resonance between the fuel assembly and the reactor structures. 26 refs., 419 figs., 85 tabs. (Author)

  3. Hierarchical Structures from Inorganic Nanocrystal Self-Assembly for Photoenergy Utilization

    Directory of Open Access Journals (Sweden)

    Yun-Pei Zhu

    2014-01-01

    Full Text Available Self-assembly has emerged as a powerful strategy for controlling the structure and physicochemical properties of ensembles of inorganic nanocrystals. Hierarchical structures from nanocrystal assembly show collective properties that differ from individual nanocrystals and bulk samples. Incorporation of structural hierarchy into nanostructures is of great importance as a result of enhancing mass transportation, reducing resistance to diffusion, and high surface areas for adsorption and reaction, and thus much effort has been devoted to the exploration of various novel organizing schemes through which inorganic porous structure with architectural design can be created. In this paper, the recent research progress in this field is reviewed. The general strategies for the synthesis of hierarchical structures assembled from nanobuilding blocks are elaborated. The well-defined hierarchical structures provide new opportunities for optimizing, tuning, and/or enhancing the properties and performance of these materials and have found applications in photoenergy utilization including photodegradation, photocatalytic H2 production, photocatalytic CO2 conversion, and sensitized solar cells, and these are discussed illustratively.

  4. Diamond field emitter array cathodes and possibilities for employing additive manufacturing for dielectric laser accelerating structures

    Energy Technology Data Exchange (ETDEWEB)

    Simakov, Evgenya Ivanovna [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Andrews, Heather Lynn [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Herman, Matthew Joseph [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Hubbard, Kevin Mark [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Weis, Eric [Los Alamos National Lab. (LANL), Los Alamos, NM (United States)

    2016-09-20

    These are slides for a presentation at Stanford University. The outline is as follows: Motivation: customers for compact accelerators, LANL's technologies for laser acceleration, DFEA cathodes, and additive manufacturing of micron-size structures. Among the stated conclusions are the following: preliminary study identified DFEA cathodes as promising sources for DLAs--high beam current and small emittance; additive manufacturing with Nanoscribe Professional GT can produce structures with the right scale features for a DLA operating at micron wavelengths (fabrication tolerances need to be studied, DLAs require new materials). Future plans include DLA experiment with a beam produced by the DFEA cathode with field emission, demonstration of photoemission from DFEAs, and new structures to print and test.

  5. Particle Acceleration Affected by the Evolving Velocity Structures in the Solar Wind

    Science.gov (United States)

    Tsubouchi, K.

    2015-12-01

    It is accepted that high-energy particles are efficiently generated during their crossing of shocks in space, where the diffusive shock acceleration is the most standard process to explain the observed energy spectrum beyond the order of a gigaelectronvolt. In contrast, recent spacecraft observations have shown different characteristics in a lower energy range (a kilo- to megaelectronvolt): particles in the heliosphere have a power-law spectrum in particle speed with a spectral index of -5, which is commonly found in any solar wind conditions. This is a puzzling result that the shocks are not a necessary element responsible for accelerating particles. The alternative mechanism, a pump acceleration, is proposed where particles are accelerated in a region containing large-scale compressions and expansions (e.g., Fisk and Gloeckler, JGR 2014). In the present study, we elucidate the validity of this mechanism by performing hybrid simulations to investigate the particle, particularly pickup ions, dynamics in various situations of non-uniform velocity field, such as a simple fast/slow flow interaction, sinusoidal structures, or random profiles, and to compare the velocity spectrum of suprathermal particles in each case. We also study the scale dependence of acceleration processes by comparing the spectrum of the energetic H+, He+, and O+.

  6. Simulations of super-structure domain walls in two dimensional assemblies of magnetic nanoparticles

    DEFF Research Database (Denmark)

    Jordanovic, Jelena; Beleggia, Marco; Schiøtz, Jakob;

    2015-01-01

    We simulate the formation of domain walls in two-dimensional assemblies of magnetic nanoparticles. Particle parameters are chosen to match recent electron holography and Lorentz microscopy studies of almost monodisperse cobalt nanoparticles assembled into regular, elongated lattices....... As the particles are small enough to consist of a single magnetic domain each, their magnetic interactions can be described by a spin model in which each particle is assigned a macroscopic "superspin." Thus, the magnetic behaviour of these lattices may be compared to magnetic crystals with nanoparticle superspins...... oriented along the long dimension of nanoparticle assemblies rather than along the short dimension. This is unlike what is typically observed in continuous magnetic materials, where the exchange interaction introduces an energetic cost proportional to the area of the domain walls. Structural disorder...

  7. Structure of Hepatitis E Virion-Sized Particle Reveals an RNA-Dependent Viral Assembly Pathway

    Energy Technology Data Exchange (ETDEWEB)

    Xing, L.; Wall, J.; Li, T.-C.; Mayazaki, N.; Simon, M. N.; Moore, M.; Wang, C.-Y.; Takeda, N.; Wakita, T.; Miyamura, T.; Cheng, R. H.

    2010-10-22

    Hepatitis E virus (HEV) induces acute hepatitis in humans with a high fatality rate in pregnant women. There is a need for anti-HEV research to understand the assembly process of HEV native capsid. Here, we produced a large virion-sized and a small T=1 capsid by expressing the HEV capsid protein in insect cells with and without the N-terminal 111 residues, respectively, for comparative structural analysis. The virion-sized capsid demonstrates a T=3 icosahedral lattice and contains RNA fragment in contrast to the RNA-free T=1 capsid. However, both capsids shared common decameric organization. The in vitro assembly further demonstrated that HEV capsid protein had the intrinsic ability to form decameric intermediate. Our data suggest that RNA binding is the extrinsic factor essential for the assembly of HEV native capsids.

  8. Laser Wakefield Acceleration: Structural and Dynamic Studies. Final Technical Report ER40954

    Energy Technology Data Exchange (ETDEWEB)

    Downer, Michael

    2014-12-19

    Particle accelerators enable scientists to study the fundamental structure of the universe, but have become the largest and most expensive of scientific instruments. In this project, we advanced the science and technology of laser-plasma accelerators, which are thousands of times smaller and less expensive than their conventional counterparts. In a laser-plasma accelerator, a powerful laser pulse exerts light pressure on an ionized gas, or plasma, thereby driving an electron density wave, which resembles the wake behind a boat. Electrostatic fields within this plasma wake reach tens of billions of volts per meter, fields far stronger than ordinary non-plasma matter (such as the matter that a conventional accelerator is made of) can withstand. Under the right conditions, stray electrons from the surrounding plasma become trapped within these “wake-fields”, surf them, and acquire energy much faster than is possible in a conventional accelerator. Laser-plasma accelerators thus might herald a new generation of compact, low-cost accelerators for future particle physics, x-ray and medical research. In this project, we made two major advances in the science of laser-plasma accelerators. The first of these was to accelerate electrons beyond 1 gigaelectronvolt (1 GeV) for the first time. In experimental results reported in Nature Communications in 2013, about 1 billion electrons were captured from a tenuous plasma (about 1/100 of atmosphere density) and accelerated to 2 GeV within about one inch, while maintaining less than 5% energy spread, and spreading out less than ½ milliradian (i.e. ½ millimeter per meter of travel). Low energy spread and high beam collimation are important for applications of accelerators as coherent x-ray sources or particle colliders. This advance was made possible by exploiting unique properties of the Texas Petawatt Laser, a powerful laser at the University of Texas at Austin that produces pulses of 150 femtoseconds (1 femtosecond is 10

  9. Engineering Mathematical Analysis Method for Productivity Rate in Linear Arrangement Serial Structure Automated Flow Assembly Line

    Directory of Open Access Journals (Sweden)

    Tan Chan Sin

    2015-01-01

    Full Text Available Productivity rate (Q or production rate is one of the important indicator criteria for industrial engineer to improve the system and finish good output in production or assembly line. Mathematical and statistical analysis method is required to be applied for productivity rate in industry visual overviews of the failure factors and further improvement within the production line especially for automated flow line since it is complicated. Mathematical model of productivity rate in linear arrangement serial structure automated flow line with different failure rate and bottleneck machining time parameters becomes the basic model for this productivity analysis. This paper presents the engineering mathematical analysis method which is applied in an automotive company which possesses automated flow assembly line in final assembly line to produce motorcycle in Malaysia. DCAS engineering and mathematical analysis method that consists of four stages known as data collection, calculation and comparison, analysis, and sustainable improvement is used to analyze productivity in automated flow assembly line based on particular mathematical model. Variety of failure rate that causes loss of productivity and bottleneck machining time is shown specifically in mathematic figure and presents the sustainable solution for productivity improvement for this final assembly automated flow line.

  10. Formation of the self-assembled structures by the ultrasonic cavitation erosion-corrosion effect on carbon steel

    Directory of Open Access Journals (Sweden)

    Dayun Yan

    2015-11-01

    Full Text Available The cavitation erosion-corrosion effect on the metal surface always forms irregular oxide structures. In this study, we reported the formation of regular self-assembled structures of amorphous nanoparticles around the cavitation erosion pits on carbon steel upon the ultrasonic cavitation in methylene blue solution. Each self-assembled structure was composed of linearly aligned nanoparticles of about 100 nm. The formation of self-assembled structures might be due to the combined effect of corrosion, specific sonochemical reaction in methylene blue solution, and the magnetic domain structures on the carbon steel.

  11. Acetylcholinesterase accelerates assembly of amyloid-beta-peptides into Alzheimer's fibrils: possible role of the peripheral site of the enzyme.

    Science.gov (United States)

    Inestrosa, N C; Alvarez, A; Pérez, C A; Moreno, R D; Vicente, M; Linker, C; Casanueva, O I; Soto, C; Garrido, J

    1996-04-01

    Acetylcholinesterase (AChE), an important component of cholinergic synapses, colocalizes with amyloid-beta peptide (A beta) deposits of Alzheimer's brain. We report here that bovine brain AChE, as well as the human and mouse recombinant enzyme, accelerates amyloid formation from wild-type A beta and a mutant A beta peptide, which alone produces few amyloid-like fibrils. The action of AChE was independent of the subunit array of the enzyme, was not affected by edrophonium, an active site inhibitor, but it was affected by propidium, a peripheral anionic binding site ligand. Butyrylcholinesterase, an enzyme that lacks the peripheral site, did not affect amyloid formation. Furthermore, AChE is a potent amyloid-promoting factor when compared with other A beta-associated proteins. Thus, in addition to its role in cholinergic synapses, AChE may function by accelerating A beta formation and could play a role during amyloid deposition in Alzheimer's brain.

  12. Structure, Dynamics, and Assembly of Filamentous Bacteriophages by Nuclear Magnetic Resonance Spectroscopy

    Science.gov (United States)

    Opella, Stanley J.; Zeri, Ana Carolina; Park, Sang Ho

    2008-05-01

    Filamentous bacteriophages serve as model systems for the development and implementation of spectroscopic methods suitable for biological supramolecular assemblies. Not only are their coat proteins small and readily prepared in the laboratory, but they also have two primary roles as membrane proteins and as the principal structural element of the virus particles. As a bacterial system, they are readily labeled with stable isotopes, and this has opened possibilities for the many nuclear magnetic resonance (NMR) studies described in this review. In particular, solid-state NMR of aligned samples has been used to determine the three-dimensional structures of both the membrane-bound forms of coat proteins in phospholipid bilayers and structural forms in virus particles, which has led to an analysis of the assembly mechanism for virus particles as they are extruded through the cell membrane.

  13. SpRoUTS (Space Robot Universal Truss System): Reversible Robotic Assembly of Deployable Truss Structures of Reconfigurable Length

    Science.gov (United States)

    Jenett, Benjamin; Cellucci, Daniel; Cheung, Kenneth

    2015-01-01

    Automatic deployment of structures has been a focus of much academic and industrial work on infrastructure applications and robotics in general. This paper presents a robotic truss assembler designed for space applications - the Space Robot Universal Truss System (SpRoUTS) - that reversibly assembles a truss from a feedstock of hinged andflat-packed components, by folding the sides of each component up and locking onto the assembled structure. We describe the design and implementation of the robot and show that the assembled truss compares favorably with prior truss deployment systems.

  14. Solvent-induced structural transition of self-assembled dipeptide: from organogels to microcrystals.

    Science.gov (United States)

    Zhu, Pengli; Yan, Xuehai; Su, Ying; Yang, Yang; Li, Junbai

    2010-03-01

    Organogels that are self-assembled from simple peptide molecules are an interesting class of nano- and mesoscale soft matter with simplicity and functionality. Investigating the precise roles of the organic solvents and their effects on stabilization of the formed organogel is an important topic for the development of low-molecular-weight gelators. We report the structural transition of an organogel self-assembled from a single dipeptide building block, diphenylalanine (L-Phe-L-Phe, FF), in toluene into a flower-like microcrystal merely by introducing ethanol as a co-solvent; this provides deeper insights into the phase transition between mesostable gels and thermodynamically stable microcrystals. Multiple characterization techniques were used to reveal the transitions. The results indicate that there are different molecular-packing modes formed in the gels and in the microcrystals. Further studies show that the co-solvent, ethanol, which has a higher polarity than toluene, might be involved in the formation of hydrogen bonds during molecular self-assembly of the dipeptide in mixed solvents, thus leading to the transition of organogels into microcrystals. The structural transformation modulated by the co-solvent might have a potential implication in controllable molecular self-assembly. PMID:20119986

  15. Acceleration response spectrum for prediction of structural vibration due to individual bouncing

    Science.gov (United States)

    Chen, Jun; Wang, Lei; Racic, Vitomir; Lou, Jiayue

    2016-08-01

    This study is designed to develop an acceleration response spectrum that can be used in vibration serviceability assessment of civil engineering structures, such as floors and grandstands those are dynamically excited by individual bouncing. The spectrum is derived from numerical simulations and statistical analysis of acceleration responses of a single degree of freedom system with variable natural frequency and damping under a large number of experimentally measured individual bouncing loads. Its mathematical representation is fit for fast yet reliable application in design practice and is comprised of three equations that describe three distinct frequency regions observed in the actual data: the first resonant plateau (2-3.5 Hz), the second resonant plateau (4-7 Hz) and a descension region (7-15 Hz). Finally, this paper verifies the proposed response spectrum approach to predict structural vibration by direct comparison against numerical simulations and experimental results.

  16. Focusing characteristics of an accelerating structure with non-circular beam holes

    International Nuclear Information System (INIS)

    High energy linacs of the next generation are required to keep stably high bunch populations and very small beam spots at colliding points, in order to realize high luminosity at TeV energy region. CERN proposed to apply the rf focusing technology which makes a strong focusing force according to the rf phase within a bunch, and rf focusing power is proportional to both the accelerating gradient and the operating frequency. Some computed results of the focusing property of 3 GHz accelerating structures are presented which has non-circular beam holes. The construction of this 3 GHz structure, because an rf technology for 3 GHz is well-established, will be useful in order to know, at an early stage of the development, whether the idea will be successful or not. The 3D code MAFIA was used to investigate the deflecting force caused by the asymmetry of the beam aperture. (R.P.) 5 refs., 14 figs., 3 tabs

  17. Two-Dimensional Layered Oxide Structures Tailored by Self-Assembled Layer Stacking via Interfacial Strain.

    Science.gov (United States)

    Zhang, Wenrui; Li, Mingtao; Chen, Aiping; Li, Leigang; Zhu, Yuanyuan; Xia, Zhenhai; Lu, Ping; Boullay, Philippe; Wu, Lijun; Zhu, Yimei; MacManus-Driscoll, Judith L; Jia, Quanxi; Zhou, Honghui; Narayan, Jagdish; Zhang, Xinghang; Wang, Haiyan

    2016-07-01

    Study of layered complex oxides emerge as one of leading topics in fundamental materials science because of the strong interplay among intrinsic charge, spin, orbital, and lattice. As a fundamental basis of heteroepitaxial thin film growth, interfacial strain can be used to design materials that exhibit new phenomena beyond their conventional forms. Here, we report a strain-driven self-assembly of bismuth-based supercell (SC) with a two-dimensional (2D) layered structure. With combined experimental analysis and first-principles calculations, we investigated the full SC structure and elucidated the fundamental growth mechanism achieved by the strain-enabled self-assembled atomic layer stacking. The unique SC structure exhibits room-temperature ferroelectricity, enhanced magnetic responses, and a distinct optical bandgap from the conventional double perovskite structure. This study reveals the important role of interfacial strain modulation and atomic rearrangement in self-assembling a layered singe-phase multiferroic thin film, which opens up a promising avenue in the search for and design of novel 2D layered complex oxides with enormous promise. PMID:27295399

  18. A tractable genotype-phenotype map modelling the self-assembly of protein quaternary structure.

    Science.gov (United States)

    Greenbury, Sam F; Johnston, Iain G; Louis, Ard A; Ahnert, Sebastian E

    2014-06-01

    The mapping between biological genotypes and phenotypes is central to the study of biological evolution. Here, we introduce a rich, intuitive and biologically realistic genotype-phenotype (GP) map that serves as a model of self-assembling biological structures, such as protein complexes, and remains computationally and analytically tractable. Our GP map arises naturally from the self-assembly of polyomino structures on a two-dimensional lattice and exhibits a number of properties: redundancy (genotypes vastly outnumber phenotypes), phenotype bias (genotypic redundancy varies greatly between phenotypes), genotype component disconnectivity (phenotypes consist of disconnected mutational networks) and shape space covering (most phenotypes can be reached in a small number of mutations). We also show that the mutational robustness of phenotypes scales very roughly logarithmically with phenotype redundancy and is positively correlated with phenotypic evolvability. Although our GP map describes the assembly of disconnected objects, it shares many properties with other popular GP maps for connected units, such as models for RNA secondary structure or the hydrophobic-polar (HP) lattice model for protein tertiary structure. The remarkable fact that these important properties similarly emerge from such different models suggests the possibility that universal features underlie a much wider class of biologically realistic GP maps.

  19. A tractable genotype–phenotype map modelling the self-assembly of protein quaternary structure

    Science.gov (United States)

    Greenbury, Sam F.; Johnston, Iain G.; Louis, Ard A.; Ahnert, Sebastian E.

    2014-01-01

    The mapping between biological genotypes and phenotypes is central to the study of biological evolution. Here, we introduce a rich, intuitive and biologically realistic genotype–phenotype (GP) map that serves as a model of self-assembling biological structures, such as protein complexes, and remains computationally and analytically tractable. Our GP map arises naturally from the self-assembly of polyomino structures on a two-dimensional lattice and exhibits a number of properties: redundancy (genotypes vastly outnumber phenotypes), phenotype bias (genotypic redundancy varies greatly between phenotypes), genotype component disconnectivity (phenotypes consist of disconnected mutational networks) and shape space covering (most phenotypes can be reached in a small number of mutations). We also show that the mutational robustness of phenotypes scales very roughly logarithmically with phenotype redundancy and is positively correlated with phenotypic evolvability. Although our GP map describes the assembly of disconnected objects, it shares many properties with other popular GP maps for connected units, such as models for RNA secondary structure or the hydrophobic-polar (HP) lattice model for protein tertiary structure. The remarkable fact that these important properties similarly emerge from such different models suggests the possibility that universal features underlie a much wider class of biologically realistic GP maps. PMID:24718456

  20. Electronic structure and self-assembly of cross-linked semiconductor nanocrystal arrays

    International Nuclear Information System (INIS)

    We studied the electronic level structure of assemblies of InAs quantum dots and CdSe nanorods cross-linked by 1,4-phenylenediamine molecules using scanning tunneling spectroscopy. We found that the bandgap in these arrays is reduced with respect to the corresponding ligand-capped nanocrystal arrays. In addition, a pronounced sub-gap spectral structure commonly appeared which can be attributed to unpassivated nanocrystal surface states or associated with linker-molecule-related levels. The exchange of the ligands by the linker molecules also affected the structural array properties. Most significantly, clusters of close-packed standing CdSe nanorods were formed

  1. Polymorphism in Self-Assembled Structures of 9-Anthracene Carboxylic Acid on Ag(111

    Directory of Open Access Journals (Sweden)

    Bo Xu

    2012-06-01

    Full Text Available Surface self-assembly process of 9-anthracene carboxylic acid (AnCA on Ag(111 was investigated using STM. Depending on the molecular surface density, four spontaneously formed and one annealed AnCA ordered phases were observed, namely a straight belt phase, a zigzag double-belt phase, two simpler dimer phases, and a kagome phase. The two high-density belt phases possess large unit cells on the scale length of 10 nm, which are seldom observed in molecular self-assembled structures. This structural diversity stems from a complicated competition of different interactions of AnCA molecules on metal surface, including intermolecular and molecular-substrate interactions, as well as the steric demand from high molecular surface density.

  2. A new approach for cell formation and scheduling with assembly operations and product structure

    Directory of Open Access Journals (Sweden)

    Mir Bahador Aryanezhad

    2011-01-01

    Full Text Available In this paper, a new formulation model for cellular manufacturing system (CMS design problem is proposed. The proposed model of this paper considers assembly operations and product structure so that it includes the scheduling problem with the formation of manufacturing cells, simultaneously. Since the proposed model is nonlinear, a linearization method is applied to gain optimal solution when the model is solved using direct implementation of mixed integer programming. A new genetic algorithm (GA is also proposed to solve the resulted model for large-scale problems. We examine the performance of the proposed method using the direct implementation and the proposed GA method. The results indicate that the proposed GA approach could provide efficient assembly and product structure for real-world size problems.

  3. Structural mimics of viruses through peptide/DNA co-assembly.

    Science.gov (United States)

    Ni, Rong; Chau, Ying

    2014-12-31

    A synthetic mimic of viral structure has been constructed by the synergistic co-assembly of a 16-amino acid peptide and plasmid DNA. The rational design of this short peptide, including segments for binding DNA and forming β-sheet, is inspired by viral capsid protein. The resulting nanostructures, which we term nanococoons, appear as ellipsoids of virus-like dimension (65 × 47 nm) and display repeating stripes of ∼4 nm wide. We propose that the co-assembly process involves DNA as a template to assist the organization of peptide strands by electrostatic interaction, while the bilayer β-sheets and their lateral association stabilize the peptide "capsid" and organize the DNA within. The hierarchy affords an extremely stable structure, protecting peptide and DNA against enzymatic digestion. It opens a new and facile avenue to fabricate viral alternatives with diverse functions.

  4. Clonal structure affects the assembling behavior in the Japanese queenless ant Pristomyrmex punctatus

    Science.gov (United States)

    Nishide, Yudai; Satoh, Toshiyuki; Hiraoka, Tuyosi; Obara, Yoshiaki; Iwabuchi, Kikuo

    2007-10-01

    The queenless ant Pristomyrmex punctatus (Hymenoptera: Myrmicinae) has a unique society that differs from those of other typical ants. This species does not have a queen, and the workers lay eggs and produce their clones parthenogenetically. However, a colony of these ants does not always comprise members derived from a single clonal line. In this study, we examined whether P. punctatus changes its “assembling behavior” based on colony genetic structure. We prepared two subcolonies—a larger one comprising 200 individuals and a smaller one comprising 100 individuals; these subcolonies were established from a single stock colony. We investigated whether these subcolonies assemble into a single nest. The genetically monomorphic subcolonies (single clonal line) always fused into a single nest; however, the genetically polymorphic subcolonies (multiple clonal lines) did not tend to form a single colony. The present study is the first to demonstrate that the colony genetic structure significantly affects social viscosity in social insects.

  5. Multi-stacks of epitaxial GeSn self-assembled dots in Si: Structural analysis

    Energy Technology Data Exchange (ETDEWEB)

    Oliveira, F. [Institute for Semiconductor Engineering, University of Stuttgart, 70569 Stuttgart (Germany); Centre of Physics, University of Minho, Campus de Gualtar, 4710-057 Braga (Portugal); Fischer, I. A.; Schulze, J. [Institute for Semiconductor Engineering, University of Stuttgart, 70569 Stuttgart (Germany); Benedetti, A. [CACTI, Univ. de Vigo, Campus Universitario Lagoas Marcosende 15, Vigo (Spain); Cerqueira, M. F.; Vasilevskiy, M. I. [Centre of Physics, University of Minho, Campus de Gualtar, 4710-057 Braga (Portugal); Stefanov, S.; Chiussi, S. [Dpto. Fisica Aplicada, Univ. de Vigo, Rua Maxwell s/n, Campus Universitario Lagoas Marcosende, Vigo (Spain)

    2015-03-28

    We report on the growth and structural and morphologic characterization of stacked layers of self-assembled GeSn dots grown on Si (100) substrates by molecular beam epitaxy at low substrate temperature T = 350 °C. Samples consist of layers (from 1 up to 10) of Ge{sub 0.96}Sn{sub 0.04} self-assembled dots separated by Si spacer layers, 10 nm thick. Their structural analysis was performed based on transmission electron microscopy, atomic force microscopy, and Raman scattering. We found that up to 4 stacks of dots could be grown with good dot layer homogeneity, making the GeSn dots interesting candidates for optoelectronic device applications.

  6. Polymer-virus core-shell structures prepared via co-assembly and template synthesis methods

    Institute of Scientific and Technical Information of China (English)

    SUTHIWANGCHAROEN; Nisaraporn; PREVELIGE; Peter; E.Jr

    2010-01-01

    Bionanoparticles(BNPs),consisting of virus and virus-like assemblies,have attracted much attention in the biomedical field for their applications such as imaging and targeted drug delivery,owing to their well-defined structures and well-controlled chemistries.BNPs-based core-shell structures provide a unique system for the investigation of biological interactions such as protein-protein and protein-carbohydrate interactions.However,it is still a challenge to prepare the BNPs-based core-shell structures.Herein,we describe(i) co-assembly method and(ii) template synthesis method in the development of polymer-BNPs core-shell structures.These two methods can be divided into three different systems.In system A,different polymers including poly(2-vinylpyridine)(P2VP),poly(4-vinylpyridine)(P4VP) and poly(ε-caprolactone)-block-poly(2-vinylpyridine)(PCL-b-P2VP) can form a raspberry-like structure with BNPs.In system B,polystyrene(PS) spheres end capped with free amine and BNPs can form a core-shell structure.In System C,layer-by-layer(LBL) method is used to prepare positive charged PS particles,which can be used as a template to form the core-shell structures with BNPs.These two methods may open a new way for preparing novel protein-based functional materials for potential applications in the biomedical field.

  7. Template-assembled melittin: structural and functional characterization of a designed, synthetic channel-forming protein.

    OpenAIRE

    PAWLAK, M.; Meseth, U; Dhanapal, B.; Mutter, M.; Vogel, H.

    1994-01-01

    Template-assembled proteins (TASPs) comprising 4 peptide blocks, each of either the natural melittin sequence (melittin-TASP) or of a truncated melittin sequence (amino acids 6-26, melittin6-26-TASP), C-terminally linked to a (linear or cyclic) 10-amino acid template were synthesized and characterized, structurally by CD, by fluorescence spectroscopy, and by monolayer experiments, and functionally, by electrical conductance measurements on planar bilayers and release experiments on dye-loaded...

  8. Complex crystal structures formed by the self assembly of di-tethered nanospheres

    OpenAIRE

    Iacovella, Christopher R.; Glotzer, Sharon C.

    2009-01-01

    We report the results from a computational study of the self-assembly of amphiphilic di-tethered nanospheres using molecular simulation. As a function of the interaction strength and directionality of the tether-tether interactions, we predict the formation of four highly ordered phases not previously reported for nanoparticle systems. We find a double diamond structure comprised of a zincblende (binary diamond) arrangement of spherical micelles with a complementary diamond network of nanopar...

  9. Structural, nanomechanical, and computational characterization of D,L-cyclic peptide assemblies.

    Science.gov (United States)

    Rubin, Daniel J; Amini, Shahrouz; Zhou, Feng; Su, Haibin; Miserez, Ali; Joshi, Neel S

    2015-03-24

    The rigid geometry and tunable chemistry of D,L-cyclic peptides makes them an intriguing building-block for the rational design of nano- and microscale hierarchically structured materials. Herein, we utilize a combination of electron microscopy, nanomechanical characterization including depth sensing-based bending experiments, and molecular modeling methods to obtain the structural and mechanical characteristics of cyclo-[(Gln-D-Leu)4] (QL4) assemblies. QL4 monomers assemble to form large, rod-like structures with diameters up to 2 μm and lengths of tens to hundreds of micrometers. Image analysis suggests that large assemblies are hierarchically organized from individual tubes that undergo bundling to form larger structures. With an elastic modulus of 11.3 ± 3.3 GPa, hardness of 387 ± 136 MPa and strength (bending) of 98 ± 19 MPa the peptide crystals are among the most robust known proteinaceous micro- and nanofibers. The measured bending modulus of micron-scale fibrils (10.5 ± 0.9 GPa) is in the same range as the Young's modulus measured by nanoindentation indicating that the robust nanoscale network from which the assembly derives its properties is preserved at larger length-scales. Materials selection charts are used to demonstrate the particularly robust properties of QL4 including its specific flexural modulus in which it outperforms a number of biological proteinaceous and nonproteinaceous materials including collagen and enamel. The facile synthesis, high modulus, and low density of QL4 fibers indicate that they may find utility as a filler material in a variety of high efficiency, biocompatible composite materials. PMID:25757883

  10. Complete multipactor suppression in an X-band dielectric-loaded accelerating structure

    Energy Technology Data Exchange (ETDEWEB)

    Jing, C. [Euclid Techlabs, LLC, 5900 Harper Rd, Solon, Ohio 44139, USA; High Energy Physics Division, Argonne National Laboratory, Argonne, Illinois 60439, USA; Gold, S. H. [Plasma Physics Division, Naval Research Laboratory, Washington, DC 20375, USA; Fischer, Richard [Plasma Physics Division, Naval Research Laboratory, Washington, DC 20375, USA; Gai, W. [High Energy Physics Division, Argonne National Laboratory, Argonne, Illinois 60439, USA

    2016-05-09

    Multipactor is a major issue limiting the gradient of rf-driven Dielectric-Loaded Accelerating (DLA) structures. Theoretical models have predicted that an axial magnetic field applied to DLA structures may completely block the multipactor discharge. However, previous attempts to demonstrate this magnetic field effect in an X-band traveling-wave DLA structure were inconclusive, due to the axial variation of the applied magnetic field, and showed only partial suppression of the multipactor loading [Jing et al., Appl. Phys. Lett. 103, 213503 (2013)]. The present experiment has been performed under improved conditions with a uniform axial magnetic field extending along the length of an X-band standing-wave DLA structure. Multipactor loading began to be continuously reduced starting from 3.5 kG applied magnetic field and was completely suppressed at 8 kG. Dependence of multipactor suppression on the rf gradient inside the DLA structure was also measured.

  11. Hemolysin coregulated protein 1 as a molecular gluing unit for the assembly of nanoparticle hybrid structures.

    Science.gov (United States)

    Pham, Tuan Anh; Schreiber, Andreas; Sturm Née Rosseeva, Elena V; Schiller, Stefan; Cölfen, Helmut

    2016-01-01

    Hybrid nanoparticle (NP) structures containing organic building units such as polymers, peptides, DNA and proteins have great potential in biosensor and electronic applications. The nearly free modification of the polymer chain, the variation of the protein and DNA sequence and the implementation of functional moieties provide a great platform to create inorganic structures of different morphology, resulting in different optical and magnetic properties. Nevertheless, the design and modification of a protein structure with functional groups or sequences for the assembly of biohybrid materials is not trivial. This is mainly due to the sensitivity of its secondary, tertiary and quaternary structure to the changes in the interaction (e.g., hydrophobic, hydrophilic, electrostatic, chemical groups) between the protein subunits and the inorganic material. Here, we use hemolysin coregulated protein 1 (Hcp1) from Pseudomonas aeruginosa as a building and gluing unit for the formation of biohybrid structures by implementing cysteine anchoring points at defined positions on the protein rim (Hcp1_cys3). We successfully apply the Hcp1_cys3 gluing unit for the assembly of often linear, hybrid structures of plasmonic gold (Au NP), magnetite (Fe3O4 NP), and cobalt ferrite nanoparticles (CoFe2O4 NP). Furthermore, the assembly of Au NPs into linear structures using Hcp1_cys3 is investigated by UV-vis spectroscopy, TEM and cryo-TEM. One key parameter for the formation of Au NP assembly is the specific ionic strength in the mixture. The resulting network-like structure of Au NPs is characterized by Raman spectroscopy, showing surface-enhanced Raman scattering (SERS) by a factor of 8·10(4) and a stable secondary structure of the Hcp1_cys3 unit. In order to prove the catalytic performance of the gold hybrid structures, they are used as a catalyst in the reduction reaction of 4-nitrophenol showing similar catalytic activity as the pure Au NPs. To further extend the functionality of the

  12. Thermodynamic and structural analysis of microtubule assembly: the role of GTP hydrolysis.

    Science.gov (United States)

    Vulevic, B; Correia, J J

    1997-03-01

    that assembly with GTP/2 M glycerol and with taxol is consistent with conformational rearrangements in 3-6% of the total amino acids in the heterodimer. In addition, taxol binding contributes to the thermodynamics of the overall process by reducing the delta H degree and delta S degree for microtubule assembly. In the presence of GMPCPP or GMPCP, tubulin subunits associate with extensive conformational rearrangement, corresponding to 10% and 26% of the total amino acids in the heterodimer, respectively, which gives rise to a large loss of configurational entropy. An alternative, and probably preferable, interpretation of these data is that, especially with GMPCP-tubulin, additional isomerization or protonation events are induced by the presence of the methylene moiety and linked to microtubule assembly. Structural analysis shows that GTP hydrolysis is not required for sheet closure into a microtubule cylinder, but only increases the probability of this event occurring. Sheet extensions and sheet polymers appear to have a similar average length under various conditions, suggesting that the minimum cooperative unit for closure of sheets into a microtubule cylinder is approximately 400 nm long. Because of their low level of occurrence, sheets are not expected to significantly affect the thermodynamics of assembly.

  13. Subcritical Multiplication Parameters of the Accelerator-Driven System with 100 MeV Protons at the Kyoto University Critical Assembly

    Directory of Open Access Journals (Sweden)

    Jae-Yong Lim

    2012-01-01

    Full Text Available Basic experiments on the accelerator-driven system (ADS at the Kyoto University Critical Assembly are carried out by combining a solid-moderated and -reflected core with the fixed-field alternating gradient accelerator. The reaction rates are measured by the foil activation method to obtain the subcritical multiplication parameters. The numerical calculations are conducted with the use of MCNPX and JENDL/HE-2007 to evaluate the reaction rates of activation foils set in the core region and at the location of the target. Here, a comparison between the measured and calculated eigenvalues reveals a relative difference of around 10% in C/E values. A special mention is made of the fact that the reaction rate analyses in the subcritical systems demonstrate apparently the actual effect of moving the tungsten target into the core on neutron multiplication. A series of further ADS experiments with 100 MeV protons needs to be carried out to evaluate the accuracy of subcritical multiplication parameters.

  14. Comparative self-assembly studies and self-sorting of two structurally isomeric naphthalene-diimide (NDI)-gelators

    Indian Academy of Sciences (India)

    Anindita Das; Mijanur Rahaman Molla; Suhrit Ghosh

    2011-11-01

    We have reported here a comparative self-assembly and gelation studies of two isomeric bis-amide functionalized NDI-derivatives. In one case (NDI-1) the two amide groups were placed symmetrically on either side of the chromophore while for the other system (NDI-2) they were located on same side. In non-polar solvent both isomers formed self-assembled structures by synergistic effect of -stacking and hydrogen-bonding. The propensity for self-assembly of NDI-1 was greater due to symmetrical placement of two amide groups on either arms of this chromophore which allowed -stacking in tandem with hydrogen-bonding, while NDI-2 formed thermally more stable self-assembled fibres possibly due to location of two amide groups in close proximity along single arm of this chromophore. The structural difference in these two isomers lead to distinctly different morphology of their respective self-assembled structures which was further reflected on their gelation properties. Morphology of the self-assembled array of NDI-1 showed organized and regular entangled bundles of nanorods which imparted better gelation ability to this chromophore while the self-assembled fibres of NDI-2 showed less ordered and irregular fibres. We also probed self- assembly of these two chromophores in their mixture which revealed orthogonal assembly of the individual chromophores and no molecular mixing was noticed.

  15. Temperature-induced structural phase transitions in a two-dimensional self-assembled network.

    Science.gov (United States)

    Blunt, Matthew O; Adisoejoso, Jinne; Tahara, Kazukuni; Katayama, Keisuke; Van der Auweraer, Mark; Tobe, Yoshito; De Feyter, Steven

    2013-08-14

    Two-dimensional (2D) supramolecular self-assembly at liquid-solid interfaces is a thermodynamically complex process producing a variety of structures. The formation of multiple network morphologies from the same molecular building blocks is a common occurrence. We use scanning tunnelling microscopy (STM) to investigate a structural phase transition between a densely packed and a porous phase of an alkylated dehydrobenzo[12]annulene (DBA) derivative physisorbed at a solvent-graphite interface. The influence of temperature and concentration are studied and the results combined using a thermodynamic model to measure enthalpy and entropy changes associated with the transition. These experimental results are compared to corresponding values obtained from simulations and theoretical calculations. This comparison highlights the importance of considering the solvent when modeling porous self-assembled networks. The results also demonstrate the power of using structural phase transitions to study the thermodynamics of these systems and will have implications for the development of predictive models for 2D self-assembly.

  16. Bio-inspired Structural Colors from Deposition of Synthetic Melanin Nanoparticles by Evaporative Self-assembly

    Science.gov (United States)

    Xiao, Ming; Li, Yiwen; Deheyn, Dimitri; Yue, Xiujun; Gianneschi, Nathan; Shawkey, Matthew; Dhinojwala, Ali

    2015-03-01

    Melanin, a ubiquitous black or brown pigment in the animal kingdom, is a unique but poorly understood biomaterial. Many bird feathers contain melanosomes (melanin-containing organelles), which pack into ordered nanostructures, like multilayer or two-dimensional photonic crystal structures, to produce structural colors. To understand the optical properties of melanin and how melanosomes assemble into certain structures to produce colors, we prepared synthetic melanin (polydopamine) particles with variable sizes and aspect ratios. We have characterized the absorption and refractive index of the synthetic melanin particles. We have also shown that we can use an evaporative process to self-assemble melanin films with a wide range of colors. The colors obtained using this technique is modeled using a thin-film interference model and the optical properties of the synthetic melanin nanoparticles. Our results on self-assembly of synthetic melanin nanoparticles provide an explanation as why the use of melanosomes to produce colors is prevalent in the animal kingdom. National science foundation, air force office of scientific research, human frontier science program.

  17. Structural Integrity Evaluation of In-Pool Assembly in Cold Neutron Source

    Energy Technology Data Exchange (ETDEWEB)

    Kim, Seok Hoon; Lee, K. H.; Kim, H. R.; Choi, J. W.; Kim, Y. K

    2007-03-15

    The condition for the transient operation was defined to provide the design data of the load combination, which is needed for the fatigue analysis and the component design for the In-Pool Assembly. Although the moderator vessel is classified by the Safety Class 3, the evaluation of the structural integrity was performed by the design procedure of ASME Sec. III, NB based on the concept of the design by analysis. The material for the moderator vessel and vacuum vessel is AL6061 T6. The material properties is prepared by ASME Sec. II, Part D,but those over the temperature were made using the extrapolation and the conservative value. Code Case N-519 was applied to provide the design stress intensity in condition of low temperature. The structural analysis of the vacuum tube was carried out for the vacuum pressure vessel, upper flange and bolt and the material of the upper flange and the bolt is SA182 F304 and SA193 B8, respectively. The detail analysis considering the load combination according to the service level was performed to evaluate the structural integrity. Also, the fracture mechanics evaluation for the In-Pool Assembly was carried out to guarantee the integrity of the In-Pool Assembly from the rapid fracture damage.

  18. Structure and assembly of the essential RNA ring component of a viral DNA packaging motor

    Energy Technology Data Exchange (ETDEWEB)

    Ding, Fang; Lu, Changrui; Zhao, Wei; Rajashankar, Kanagalaghatta R.; Anderson, Dwight L.; Jardine, Paul J.; Grimes, Shelley; Ke, Ailong (Cornell); (UMM)

    2011-07-25

    Prohead RNA (pRNA) is an essential component in the assembly and operation of the powerful bacteriophage {psi}29 DNA packaging motor. The pRNA forms a multimeric ring via intermolecular base-pairing interactions between protomers that serves to guide the assembly of the ring ATPase that drives DNA packaging. Here we report the quaternary structure of this rare multimeric RNA at 3.5 {angstrom} resolution, crystallized as tetrameric rings. Strong quaternary interactions and the inherent flexibility helped rationalize how free pRNA is able to adopt multiple oligomerization states in solution. These characteristics also allowed excellent fitting of the crystallographic pRNA protomers into previous prohead/pRNA cryo-EM reconstructions, supporting the presence of a pentameric, but not hexameric, pRNA ring in the context of the DNA packaging motor. The pentameric pRNA ring anchors itself directly to the phage prohead by interacting specifically with the fivefold symmetric capsid structures that surround the head-tail connector portal. From these contacts, five RNA superhelices project from the pRNA ring, where they serve as scaffolds for binding and assembly of the ring ATPase, and possibly mediate communication between motor components. Construction of structure-based designer pRNAs with little sequence similarity to the wild-type pRNA were shown to fully support the packaging of {psi}29 DNA.

  19. Simulations of super-structure domain walls in two dimensional assemblies of magnetic nanoparticles

    International Nuclear Information System (INIS)

    We simulate the formation of domain walls in two-dimensional assemblies of magnetic nanoparticles. Particle parameters are chosen to match recent electron holography and Lorentz microscopy studies of almost monodisperse cobalt nanoparticles assembled into regular, elongated lattices. As the particles are small enough to consist of a single magnetic domain each, their magnetic interactions can be described by a spin model in which each particle is assigned a macroscopic “superspin.” Thus, the magnetic behaviour of these lattices may be compared to magnetic crystals with nanoparticle superspins taking the role of the atomic spins. The coupling is, however, different. The superspins interact only by dipolar interactions as exchange coupling between individual nanoparticles may be neglected due to interparticle spacing. We observe that it is energetically favorable to introduce domain walls oriented along the long dimension of nanoparticle assemblies rather than along the short dimension. This is unlike what is typically observed in continuous magnetic materials, where the exchange interaction introduces an energetic cost proportional to the area of the domain walls. Structural disorder, which will always be present in realistic assemblies, pins longitudinal domain walls when the external field is reversed, and makes a gradual reversal of the magnetization by migration of longitudinal domain walls possible, in agreement with previous experimental results

  20. Theory of factors limiting high gradient operation of warm accelerating structures

    Energy Technology Data Exchange (ETDEWEB)

    Nusinovich, Gregory S. [University of Maryland; Antonsen, Thomas M. [University of Maryland; Kishek, Rami [University of Maryland

    2014-07-25

    This final report summarizes the research performed during the time period from 8/1/2010 to 7/31/2013. It consists of two parts describing our studies in two directions: (a) analysis of factors limiting operation of dielectric-loaded accelerating (DLA) structures where the main problem is the occurrence of multipactor on dielectric surfaces, and (b) studies of effects associated with either RF magnetic or RF electric fields which may cause the RF breakdown in high-gradient metallic accelerating structures. In the studies of DLA structures, at least, two accomplishments should be mentioned: the development of a 3D non-stationary, self-consistent code describing the multipactor phenomena and yielding very good agreement with some experimental data obtained in joint ANL/NRL experiments. In the metallic structures, such phenomena as the heating and melting of micro-particles (metallic dust) by RF electric and magnetic fields in single-shot and rep-rate regimes is analyzed. Also, such processes in micro-protrusions on the structure surfaces as heating and melting due to the field emitted current and the Nottingham effect are thoroughly investigated with the account for space charge of emitted current on the field emission from the tip.

  1. Accelerated corrosion test and corrosion failure distribution model of aircraft structural aluminum alloy

    Institute of Scientific and Technical Information of China (English)

    LIU Wen-lin; MU Zhi-tao; JIN Ping

    2006-01-01

    Based on corrosion damage data of 10 years for a type of aircraft aluminum alloy, the statistical analysis was conducted by Gumbel, Normal and two parameters Weibull distribution function. The results show that aluminum alloy structural member has the corrosion history of pitting corrosion-intergranular corrosion-exfoliation corrosion, and the maximum corrosion depth is in conformity to normal distribution. The accelerated corrosion test was carried out with the complied equivalent airport accelerated environment spectrum. The corrosion damage failure modes of aluminum alloy structural member indicate that the period of validity of the former protective coating is about 2.5 to 3 years, and that of the novel protective coating is about 4.0 to 4.5 years. The corrosion kinetics law of aluminum spar flange was established by fitting corrosion damage test data. The law indicates two apparent corrosion stages of high strength aluminum alloy section material: pitting corrosion and intergranular corrosion/exfoliation corrosion.The test results agree with the statistical fit result of corrosion data collected from corrosion member in service. The fractional error is 5.8% at the same calendar year. The accelerated corrosion test validates the corrosion kinetics law of aircraft aluminum alloy in service.

  2. Structural Basis for Accelerated Cleavage of Bovine Pancreatic Trypsin Inhibitor (BPTI) by Human Mesotrypsin

    Energy Technology Data Exchange (ETDEWEB)

    Salameh,M.; Soares, A.; Hockla, A.; Radisky, E.

    2008-01-01

    Human mesotrypsin is an isoform of trypsin that displays unusual resistance to polypeptide trypsin inhibitors and has been observed to cleave several such inhibitors as substrates. Whereas substitution of arginine for the highly conserved glycine 193 in the trypsin active site has been implicated as a critical factor in the inhibitor resistance of mesotrypsin, how this substitution leads to accelerated inhibitor cleavage is not clear. Bovine pancreatic trypsin inhibitor (BPTI) forms an extremely stable and cleavage-resistant complex with trypsin, and thus provides a rigorous challenge of mesotrypsin catalytic activity toward polypeptide inhibitors. Here, we report kinetic constants for mesotrypsin and the highly homologous (but inhibitor sensitive) human cationic trypsin, describing inhibition by, and cleavage of BPTI, as well as crystal structures of the mesotrypsin-BPTI and human cationic trypsin-BPTI complexes. We find that mesotrypsin cleaves BPTI with a rate constant accelerated 350-fold over that of human cationic trypsin and 150,000-fold over that of bovine trypsin. From the crystal structures, we see that small conformational adjustments limited to several side chains enable mesotrypsin-BPTI complex formation, surmounting the predicted steric clash introduced by Arg-193. Our results show that the mesotrypsin-BPTI interface favors catalysis through (a) electrostatic repulsion between the closely spaced mesotrypsin Arg-193 and BPTI Arg-17, and (b) elimination of two hydrogen bonds between the enzyme and the amine leaving group portion of BPTI. Our model predicts that these deleterious interactions accelerate leaving group dissociation and deacylation.

  3. Survivability of integrated PVDF film sensors to accelerated ageing conditions in aeronautical/aerospace structures

    International Nuclear Information System (INIS)

    This work validates the use of integrated polyvinylidene fluoride (PVDF) film sensors for dynamic testing, even after being subjected to UV-thermo-hygro-mechanical accelerated ageing conditions. The verification of PVDF sensors’ survivability in these environmental conditions, typically confronted by civil and military aircraft, is the main concern of the study. The evaluation of survivability is made by a comparison of dynamic testing results provided by the PVDF patch sensors subjected to an accelerated ageing protocol, and those provided by neutral non-aged sensors (accelerometers). The available measurements are the time-domain response signals issued from a modal analysis procedure, and the corresponding frequency response functions (FRF). These are in turn used to identify the constitutive properties of the samples by extraction of the modal parameters, in particular the natural frequencies. The composite specimens in this study undergo different accelerated ageing processes. After several weeks of experimentation, the samples exhibit a loss of stiffness, represented by a decrease in the elastic moduli down to 10%. Despite the ageing, the integrated PVDF sensors, subjected to the same ageing conditions, are still capable of providing reliable data to carry out a close followup of these changes. This survivability is a determinant asset in order to use integrated PVDF sensors to perform structural health monitoring (SHM) in the future of full-scale composite aeronautical structures. (paper)

  4. Role of Species-Specific Primary Structure Differences in Aβ42 Assembly and Neurotoxicity.

    Science.gov (United States)

    Roychaudhuri, Robin; Zheng, Xueyun; Lomakin, Aleksey; Maiti, Panchanan; Condron, Margaret M; Benedek, George B; Bitan, Gal; Bowers, Michael T; Teplow, David B

    2015-12-16

    A variety of species express the amyloid β-protein (Aβ (the term "Aβ" refers both to Aβ40 and Aβ42, whereas "Aβ40" and "Aβ42" refer to each isoform specifically). Those species expressing Aβ with primary structure identical to that expressed in humans have been found to develop amyloid deposits and Alzheimer's disease-like neuropathology. In contrast, the Aβ sequence in mice and rats contains three amino acid substitutions, Arg5Gly, His13Arg, and Tyr10Phe, which apparently prevent the development of AD-like neuropathology. Interestingly, the brush-tailed rat, Octodon degus, expresses Aβ containing only one of these substitutions, His13Arg, and does develop AD-like pathology. We investigate here the biophysical and biological properties of Aβ peptides from humans, mice (Mus musculus), and rats (Octodon degus). We find that each peptide displays statistical coil → β-sheet secondary structure transitions, transitory formation of hydrophobic surfaces, oligomerization, formation of annuli, protofibrils, and fibrils, and an inverse correlation between rate of aggregation and aggregate size (faster aggregation produced smaller aggregates). The rank order of assembly rate was mouse > rat > Aβ42. The rank order of neurotoxicity of assemblies formed by each peptide immediately after preparation was Aβ42 > mouse ≈ rat. These data do not support long-standing hypotheses that the primary factor controlling development of AD-like neuropathology in rodents is Aβ sequence. Instead, the data support a hypothesis that assembly quaternary structure and organismal responses to toxic peptide assemblies mediate neuropathogenetic effects. The implication of this hypothesis is that a valid understanding of disease causation within a given system (organism, tissue, etc.) requires the coevaluation of both biophysical and cell biological properties of that system. PMID:26421877

  5. Self-Assembly of Soft Colloids with Multi-scale Phase-Separated Structures

    Science.gov (United States)

    Sosa, Chris; Prud'Homme, Robert K.; Priestley, Rodney D.

    The ability of polymers and block co-polymers to self-assemble into highly-ordered structures in bulk two-dimensional films under specific environmental conditions has allowed in recent years for the fabrication of nano-porous membranes, nano-structured surfaces, and sacrificial templates for the preparation of inorganic nanomaterials with well-defined geometries. Extending these fairly specific fabrication techniques to the creation of similar three-dimensional colloidal structures in bulk solutions, however, has proven quite challenging despite the significant need for heterogeneously-structured colloidal materials in medicine and industry. Here we present a strategy for controlling the structural heterogeneity of soft polymer particles along multiple length scales by inducing the rapid phase-separation of polymer mixtures through a continuous nanoprecipitation process. DOE SCGF Fellowship Program.

  6. An FFT-accelerated fdtd scheme with exact absorbing conditions for characterizing axially symmetric resonant structures

    KAUST Repository

    Sirenko, Kostyantyn

    2011-01-01

    An accurate and efficient finite-difference time-domain (FDTD) method for characterizing transient waves interactions on axially symmetric structures is presented. The method achieves its accuracy and efficiency by employing localized and/or fast Fourier transform (FFT) accelerated exact absorbing conditions (EACs). The paper details the derivation of the EACs, discusses their implementation and discretization in an FDTD method, and proposes utilization of a blocked-FFT based algorithm for accelerating the computation of temporal convolutions present in nonlocal EACs. The proposed method allows transient analyses to be carried for long time intervals without any loss of accuracy and provides reliable numerical data pertinent to physical processes under resonant conditions. This renders the method highly useful in characterization of high-Q microwave radiators and energy compressors. Numerical results that demonstrate the accuracy and efficiency of the method are presented.

  7. A synthetic pulse method for excitation of RF-accelerator structures

    CERN Document Server

    Caspers, Fritz

    1986-01-01

    It is proposed to excite RF-cavity accelerator structures in a phaselocked multifrequency mode of operation. The purpose is to obtain high accelerating gradients with smaller average losses than in the conventional single-frequency operation scheme. In general the resonant frequencies are not harmonically related to each other. Assuming finite Q-values one can always find a frequency fo such that within a 3 dB bandwidth all resonances considered are at integer multiples of f0. For the gap voltage one obtains in this case a periodic pulse in the time domain with T = 1/f0. Increasing the peak gap voltage by adding (exciting) further higher modes with equal CW power on each mode (equal shout impedances assumed) results in power losses proportional to $V_{peak}$ instead of $P_{loss} ~ V_{peak}^2$ for single-frequency operation.

  8. High Power RF Induced Thermal Fatigue in the High Gradient CLIC Accelerating Structures

    CERN Document Server

    Arnau-Izquierdo, G; Heikkinen, S; Neupert, N; Wuensch, W

    2007-01-01

    The need for high accelerating gradients for the CLIC (Compact Linear Collider) imposes considerable constraints on the materials of the accelerating structures. The surfaces exposed to high pulsed RF (Radio Frequency) currents are subjected to cyclic thermal stresses possibly resulting in surface break up by fatigue. Various high strength alloys from the group of high conductivity copper alloys have been selected and have been tested in different states, with different surface treatments and in different stress ratios. Low to medium cycle fatigue data (up to 108 cycles) of fully compressive surface thermal stresses has been collected by means of a pulsed laser surface heating apparatus. The surface damage has been characterized by SEM observations and roughness measurements. High cycle fatigue data, up to 7x1010 cycles, of varying stress ratio has been collected in high frequency bulk fatigue tests using an ultrasonic apparatus. Up-to-date results from these experiments are presented.

  9. Assembly and structural analysis of a covalently closed nano-scale DNA cage

    DEFF Research Database (Denmark)

    Andersen, Felicie F; Knudsen, Bjarne; Oliveira, Cristiano Luis Pinto De;

    2008-01-01

     The inherent properties of DNA as a stable polymer with unique affinity for partner molecules determined by the specific Watson-Crick base pairing makes it an ideal component in self-assembling structures. This has been exploited for decades in the design of a variety of artificial substrates...... be described as a nano-scale DNA cage, Hence, in theory it could hold proteins or other bio-molecules to enable their investigation in certain harmful environments or even allow their organization into higher order structures...

  10. STRCMACS: An extensive set of Macros for structured programming in OS/360 assembly language

    Science.gov (United States)

    Barth, C. W.

    1974-01-01

    Two techniques are discussed that have been most often referred to as structured programming. One is that of programming with high level control structures (such as the if and while) replacing the branch instruction (goto-less programming); the other is the process of developing a program by progressively refining descriptions of components in terms of more primitive components (called stepwise refinement or top-down programming). In addition to discussing what these techniques are, it is shown why their use is advised and how both can be implemented in OS assembly language by the use of a special macro instruction package.

  11. HOM-Free Linear Accelerating Structure for e+ e- Linear Collider at C-Band

    CERN Document Server

    Kubo, K

    2003-01-01

    HOM-free linear acceleration structure using the choke mode cavity (damped cavity) is now under design for e sup + e sup - linear collider project at C-band frequency (5712 MHz). Since this structure shows powerful damping effect on most of all HOMs, there is no multibunch problem due to long range wakefields. The structure will be equipped with the microwave absorbers in each cells and also the in-line dummy load in the last few cells. The straightness tolerance for 1.8 m long structure is closer than 30 (micro)m for 25% emittance dilution limit, which can be achieved by standard machining and braising techniques. Since it has good vacuum pumping conductance through annular gaps in each cell, instabilities due to the interaction of beam with the residual-gas and ions can be minimized.

  12. Structure of a strong supernova shock wave and rapid electron acceleration confined in its transition region

    CERN Document Server

    Shimada, Nobue; Amano, Takanobu; 10.1063/1.3322828

    2010-01-01

    A new rapid energization process within a supernova shock transition region (STR) is reported by utilizing numerical simulation. Although the scale of a STR as a main dissipation region is only several hundreds of thousands km, several interesting structures are found relating to generation of a root of the energetic particles. The nonlinear evolution of plasma instabilities lead to a dynamical change in the ion phase space distribution which associates with change of the field properties. As a result, different types of large-amplitude field structures appear. One is the leading wave packet and another is a series of magnetic solitary humps. Each field structure has a microscopic scale (~ the ion inertia length). Through the multiple nonlinear scattering between these large-amplitude field structures, electrons are accelerated directly. Within a STR, quick thermalization realizes energy equipartition between the ion and electron, hot electrons play an important role in keeping these large-amplitude field str...

  13. Crystal structure of MC159 reveals molecular mechanism of DISC assembly and FLIP inhibition.

    Science.gov (United States)

    Yang, Jin Kuk; Wang, Liwei; Zheng, Lixin; Wan, Fengyi; Ahmed, Misonara; Lenardo, Michael J; Wu, Hao

    2005-12-22

    The death-inducing signaling complex (DISC) comprising Fas, Fas-associated death domain (FADD), and caspase-8/10 is assembled via homotypic associations between death domains (DDs) of Fas and FADD and between death effector domains (DEDs) of FADD and caspase-8/10. Caspase-8/10 and FLICE/caspase-8 inhibitory proteins (FLIPs) that inhibit caspase activation at the DISC level contain tandem DEDs. Here, we report the crystal structure of a viral FLIP, MC159, at 1.2 Angstroms resolution. It reveals a noncanonical fold of DED1, a dumbbell-shaped structure with rigidly associated DEDs and a different mode of interaction in the DD superfamily. Whereas the conserved hydrophobic patch of DED1 interacts with DED2, the corresponding region of DED2 mediates caspase-8 recruitment and contributes to DISC assembly. In contrast, MC159 cooperatively assembles with Fas and FADD via an extensive surface that encompasses the conserved charge triad. This interaction apparently competes with FADD self-association and disrupts higher-order oligomerization required for caspase activation in the DISC. PMID:16364918

  14. Development of mechanical test techniques for structural components of irradiated PWR fuel assembly

    International Nuclear Information System (INIS)

    An increase of fuel burnup and duration of fuel life remains one of the main methods for a nuclear power engineering enhancement. Properties of structural materials providing corrosion resistance, mechanical strength, and dimensional instability of the components of a fuel assembly (FA) are of great importance for fuel operational reliability in such fuel life cycles. Generally, PWR fuel assemblies consist of a top nozzle, spacer grid, bottom nozzle, and guide/instrumentation tubes. The top and bottom nozzle are fixed to the guide tubes using a screw or bulge method. The spacer grid fixed to the guide/instrumentation tubes using a spot weld or bulge method. To understand the in-reactor performance of PWR FA, several devices and test techniques have been developed for mechanical property tests. Among the structural components of PWR FA, a spacer grid, a hold down spring of a top nozzle and a connecting part of FA were considered. Experimental works were carried out for the unirradiated and irradiated components of advanced nuclear fuel assemblies for KSNPs and Westinghouse type PWRs at IMEF (Irradiated Materials Examination Facility) at KAERI. The developed techniques were verified through a hot cell tests. (author)

  15. Nanoscale self-assembly of starch: Phase relations, formation, and structure

    Science.gov (United States)

    Creek, John A.

    This project has been undertaken to develop a fundamental understanding of the spherulitic self-assembly of starch polymers from aqueous solution, both as a model for starch granule initiation in vivo and as a biologically-inspired material with applications in the food and pharmaceutical industries. Botanical starches were observed to form semi-crystalline spherulites from aqueous solution when cooled after a high temperature treatment, and the processes resulting in spherulite formation were investigated. Based on the influence of cooling rate on spherulite formation from a botanical starch, liquid-liquid demixing in competition with crystallization was proposed as the mechanism leading to spherulite formation (summarized in a hypothetical phase diagram). Study of amylose and amylopectin self-assembly demonstrated that the linear polymer plays the primary role in forming spherulites. As a result, the roles of degree of polymerization, concentration, and thermal processing conditions on amylose self-assembly were explored. Thermal properties, final system morphology, and crystalline allomorph were characterized. In all cases the experimental findings supported the proposed phase diagram. Finally, the crystalline nanostructure of the spherulites was probed using atomic force microscopy (AFM), revealing a seemingly universal level of structure in crystalline starch materials. This was compared to an existing model of crystallization for synthetic polymers involving a transitional liquid crystalline-like ordering---a comparison that makes sense in light of the known helical structure of starch.

  16. Acceleration of vascular sprouting from fabricated perfusable vascular-like structures.

    Directory of Open Access Journals (Sweden)

    Tatsuya Osaki

    Full Text Available Fabrication of vascular networks is essential for engineering three-dimensional thick tissues and organs in the emerging fields of tissue engineering and regenerative medicine. In this study, we describe the fabrication of perfusable vascular-like structures by transferring endothelial cells using an electrochemical reaction as well as acceleration of subsequent endothelial sprouting by two stimuli: phorbol 12-myristate 13-acetate (PMA and fluidic shear stress. The electrochemical transfer of cells was achieved using an oligopeptide that formed a dense molecular layer on a gold surface and was then electrochemically desorbed from the surface. Human umbilical vein endothelial cells (HUVECs, adhered to gold-coated needles (ϕ600 μm via the oligopeptide, were transferred to collagen gel along with electrochemical desorption of the molecular layer, resulting in the formation of endothelial cell-lined vascular-like structures. In the following culture, the endothelial cells migrated into the collagen gel and formed branched luminal structures. However, this branching process was strikingly slow (>14 d and the cell layers on the internal surfaces became disrupted in some regions. To address these issues, we examined the effects of the protein kinase C (PKC activator, PMA, and shear stress generated by medium flow. Addition of PMA at an optimum concentration significantly accelerated migration, vascular network formation, and its stabilization. Exposure to shear stress reoriented the cells in the direction of the medium flow and further accelerated vascular network formation. Because of the synergistic effects, HUVECs began to sprout as early as 3 d of perfusion culture and neighboring vascular-like structures were bridged within 5 d. Although further investigations of vascular functions need to be performed, this approach may be an effective strategy for rapid fabrication of perfusable microvascular networks when engineering three-dimensional fully

  17. The transcriptional regulator GalR self-assembles to form highly regular tubular structures

    DEFF Research Database (Denmark)

    Agerschou, Emil D; Christiansen, Gunna; Schafer, Nicholas P;

    2016-01-01

    The Gal repressor regulates transport and metabolism of D-galactose in Escherichia coli and can mediate DNA loop formation by forming a bridge between adjacent or distant sites. GalR forms insoluble aggregates at lower salt concentrations in vitro, which can be solubilized at higher salt...... concentrations. Here, we investigate the assembly and disassembly of GalR aggregates. We find that a sharp transition from aggregates to soluble species occurs between 200 and 400 mM NaCl, incompatible with a simple salting-in effect. The aggregates are highly ordered rod-like structures, highlighting a......-tolerant polymers for chromosome compaction in stationary phase cells, in effect linking self-assembly with regulatory function....

  18. High Leverage Technologies for In-Space Assembly of Complex Structures

    Science.gov (United States)

    Hamill, Doris; Bowman, Lynn M.; Belvin, W. Keith; Gilman, David A.

    2016-01-01

    In-space assembly (ISA), the ability to build structures in space, has the potential to enable or support a wide range of advanced mission capabilities. Many different individual assembly technologies would be needed in different combinations to serve many mission concepts. The many-to-many relationship between mission needs and technologies makes it difficult to determine exactly which specific technologies should receive priority for development and demonstration. Furthermore, because enabling technologies are still immature, no realistic, near-term design reference mission has been described that would form the basis for flowing down requirements for such development and demonstration. This broad applicability without a single, well-articulated mission makes it difficult to advance the technology all the way to flight readiness. This paper reports on a study that prioritized individual technologies across a broad field of possible missions to determine priority for future technology investment.

  19. Structure and function of Enterotoxigenic Escherichia coli fimbriae from differing assembly pathways

    CERN Document Server

    Mortezaei, Narges; Shao, Paul P; Shirdel, Mariam; Singh, Bhupender; McVeigh, Annette; Uhlin, Bernt Eric; Savarino, Stephen J; Andersson, Magnus; Bullitt, Esther

    2014-01-01

    Pathogenic enterotoxigenic Escherichia coli (ETEC) are the major bacterial cause of diarrhea in young children in developing countries and in travelers, causing significant mortality in children. Adhesive fimbriae are a prime virulence factor for ETEC, initiating colonization of the small intestinal epithelium. Similar to other Gram-negative bacteria, ETEC express one or more diverse fimbriae, some assembled by the chaperone-usher pathway and others by the alternate chaperone pathway. Here we elucidate structural and biophysical aspects and adaptations of each fimbrial type to its respective host niche. CS20 fimbriae are compared to CFA/I fimbriae, which are two ETEC fimbriae assembled via different pathways, and to Pfimbriae from uropathogenic E. coli. Many fimbriae unwind from their native helical filament to an extended linear conformation under force, thereby sustaining adhesion by reducing load at the point of contact between the bacterium and the target cell. CFA/I fimbriae require the least force to un...

  20. Self-assembly and structural-functional flexibility of oxygenic photosynthetic machineries: personal perspectives.

    Science.gov (United States)

    Garab, Győző

    2016-01-01

    This short review, with a bit of historical aspect and a strong personal bias and emphases on open questions, is focusing on the (macro-)organization and structural-functional flexibilities of the photosynthetic apparatus of oxygenic photosynthetic organisms at different levels of the structural complexity-selected problems that have attracted most my attention in the past years and decades. These include (i) the anisotropic organization of the pigment-protein complexes and photosynthetic membranes-a basic organizing principle of living matter, which can, and probably should be adopted to intelligent materials; (ii) the organization of protein complexes into chiral macrodomains, large self-assembling highly organized but structurally flexible entities with unique spectroscopic fingerprints-structures, where, important, high-level regulatory functions appear to 'reside'; (iii) a novel, dissipation-assisted mechanism of structural changes, based on a thermo-optic effect: ultrafast thermal transients in the close vicinity of dissipation of unused excitation energy, which is capable of inducing elementary structural changes; it makes plants capable of responding to excess excitation with reaction rates proportional to the overexcitation above the light-saturation of photosynthesis; (iv) the 3D ultrastructure of the granum-stroma thylakoid membrane assembly and other multilamellar membrane systems, and their remodelings-associated with regulatory mechanisms; (v) the molecular organization and structural-functional plasticity of the main light-harvesting complex of plants, in relation to their crystal structure and different in vivo and in vitro states; and (vi) the enigmatic role of non-bilayer lipids and lipid phases in the bilayer thylakoid membrane-warranting its high protein content and contributing to its structural flexibility. PMID:26494196

  1. Thermally Induced Ultra High Cycle Fatigue of Copper Alloys of the High Gradient Accelerating Structures

    CERN Document Server

    Heikkinen, Samuli; Wuensch, Walter

    2010-01-01

    In order to keep the overall length of the compact linear collider (CLIC), currently being studied at the European Organization for Nuclear Research (CERN), within reasonable limits, i.e. less than 50 km, an accelerating gradient above 100 MV/m is required. This imposes considerable demands on the materials of the accelerating structures. The internal surfaces of these core components of a linear accelerator are exposed to pulsed radio frequency (RF) currents resulting in cyclic thermal stresses expected to cause surface damage by fatigue. The designed lifetime of CLIC is 20 years, which results in a number of thermal stress cycles of the order of 2.33•1010. Since no fatigue data existed in the literature for CLIC parameter space, a set of three complementary experiments were initiated: ultra high cycle mechanical fatigue by ultrasound, low cycle fatigue by pulsed laser irradiation and low cycle thermal fatigue by high power microwaves, each test representing a subset of the original problem. High conductiv...

  2. Accelerating universe and the time-dependent fine-structure constant

    Science.gov (United States)

    Fujii, Yasunori

    2010-11-01

    I start with assuming a gravitational scalar field as the dark-energy supposed to be responsible for the accelerating universe. Also from the point of view of unification, a scalar field implies a time-variability of certain “constants” in Nature. In this context I once derived a relation for the time-variability of the fine-structure constant α: Δα/α =ζ Ƶ(α/π) Δσ, where ζ and Ƶ are the constants of the order one, while σ on the right-hand side is the scalar field in action in the accelerating universe. I use the reduced Planckian units with c=ℏ =MP(=(8π G)-1/2)=1. I then compared the dynamics of the accelerating universe, on one hand, and Δα/α derived from the analyses of QSO absorption lines, Oklo phenomenon, also different atomic clocks in the laboratories, on the other hand. I am here going to discuss the theoretical background of the relation, based on the scalar-tensor theory invented first by Jordan in 1955.

  3. Artificial intelligence approach to planning the robotic assembly of large tetrahedral truss structures

    Science.gov (United States)

    Homemdemello, Luiz S.

    1992-01-01

    An assembly planner for tetrahedral truss structures is presented. To overcome the difficulties due to the large number of parts, the planner exploits the simplicity and uniformity of the shapes of the parts and the regularity of their interconnection. The planning automation is based on the computational formalism known as production system. The global data base consists of a hexagonal grid representation of the truss structure. This representation captures the regularity of tetrahedral truss structures and their multiple hierarchies. It maps into quadratic grids and can be implemented in a computer by using a two-dimensional array data structure. By maintaining the multiple hierarchies explicitly in the model, the choice of a particular hierarchy is only made when needed, thus allowing a more informed decision. Furthermore, testing the preconditions of the production rules is simple because the patterned way in which the struts are interconnected is incorporated into the topology of the hexagonal grid. A directed graph representation of assembly sequences allows the use of both graph search and backtracking control strategies.

  4. Structural Investigations of Surfaces and Orientation-SpecificPhenomena in Nanocrystals and Their Assemblies

    Energy Technology Data Exchange (ETDEWEB)

    Aruguete, Deborah Michiko

    2006-06-17

    Studies of colloidal nanocrystals and their assemblies are presented. Two of these studies concern the atomic-level structural characterization of the surfaces, interfaces, and interiors present in II-VI semiconductor nanorods. The third study investigates the crystallographic arrangement of cobalt nanocrystals in self-assembled aggregates. Crystallographically-aligned assemblies of colloidal CdSe nanorods are examined with linearly-polarized Se-EXAFS spectroscopy, which probes bonding along different directions in the nanorod. This orientation-specific probe is used, because it is expected that the presence of specific surfaces in a nanorod might cause bond relaxations specific to different crystallographic directions. Se-Se distances are found to be contracted along the long axis of the nanorod, while Cd-Se distances display no angular dependence, which is different from the bulk. Ab-initio density functional theory calculations upon CdSe nanowires indicate that relaxations on the rod surfaces cause these changes. ZnS/CdS-CdSe core-shell nanorods are studied with Se, Zn, Cd, and S X-ray absorption spectroscopy (XAS). It is hypothesized that there are two major factors influencing the core and shell structures of the nanorods: the large surface area-to-volume ratio, and epitaxial strain. The presence of the surface may induce bond rearrangements or relaxations to minimize surface energy; epitaxial strain might cause the core and shell lattices to contract or expand to minimize strain energy. A marked contraction of Zn-S bonds is observed in the core-shell nanorods, indicating that surface relaxations may dominate the structure of the nanorod (strain might otherwise drive the Zn-S lattice to accommodate the larger CdS or CdSe lattices via bond expansion). EXAFS and X-ray diffraction (XRD) indicate that Cd-Se bond relaxations might be anisotropic, an expected phenomenon for a rod-shaped nanocrystal. Ordered self-assembled aggregates of cobalt nanocrystals are

  5. High-Gradient test results from a CLIC prototype accelerating structure : TD26CC

    CERN Document Server

    Degiovanni, A; Farabolini, W; Grudiev, A; Kovermann, J; Montessinos, E; Riddone, G; Syratchev, I; Wegner, R; Wuensch, W; Solodko, A; Woolley, B

    2014-01-01

    The CLIC study has progressively tested prototype accelerating structures which incorporate an ever increasing number of features which are needed for a final version ready to be installed in a linear collider. The most recent high power test made in the CERN X-band test stand, Xbox-1, is of a CERN-built prototype which includes damping features but also compact input and output power couplers, which maximize the overall length to active gradient ratio of the structure. The structure’s high-gradient performance, 105 MV/m at 250 ns pulse length and low breakdown rate, matches previously tested structures validating both CERN fabrication and the compact coupler design.

  6. Temporal evolution and electric potential structure of the auroral acceleration region from multispacecraft measurements

    Science.gov (United States)

    Forsyth, C.; Fazakerley, A. N.; Walsh, A. P.; Watt, C. E.; Garza, K.; Owen, C. J.; Constantinescu, D. O.; Dandouras, I. S.; Fornacon, K.; Lucek, E. A.; Marklund, G. T.; Sadeghi, S. S.; Khotyaintsev, Y. V.; Masson, A.; Doss, N.

    2013-12-01

    Bright aurorae can be excited by the acceleration of electrons into the atmosphere in violation of ideal magnetohydrodynamics. Modelling studies predict that the accelerating electric potential consists of electric double layers at the boundaries of an acceleration region but observations suggest that particle acceleration occurs throughout this region. Using multispacecraft observations from Cluster, we have examined two upward current regions on 14 December 2009. Our observations show that the potential difference below C4 and C3 changed by up to 1.7 kV between their respective crossings, which were separated by 150 s. The field-aligned current density observed by C3 was also larger than that observed by C4. The potential drop above C3 and C4 was approximately the same in both crossings. Using a novel technique of quantitively comparing the electron spectra measured by Cluster 1 and 3, which were separated in altitude, we determine when these spacecraft made effectively magnetically conjugate observations, and we use these conjugate observations to determine the instantaneous distribution of the potential drop in the AAR. Our observations show that an average of 15% of the potential drop in the AAR was located between C1 at 6235 km and C3 at 4685 km altitude, with a maximum potential drop between the spacecraft of 500 V, and that the majority of the potential drop was below C3. Assuming a spatial invariance along the length of the upward current region, we discuss these observations in terms of temporal changes and the vertical structure of the electrostatic potential drop and in the context of existing models and previous single- and multispacecraft observations.

  7. Structural integrity assessment and stress measurement of CHASNUPP-1 fuel assembly

    Energy Technology Data Exchange (ETDEWEB)

    Waseem,, E-mail: wazim_me@hotmail.com; Murtaza, Ghulam; Elahi, Nadeem

    2014-12-15

    Highlights: • Finite element model of CHASNUPP-1 fuel assembly produced, using Shell181 elements. • Non-linear contact and buckling analysis have been performed. • Structural integrity and stress measurement of fuel assembly is calculated. • Calculated stresses and deformations, are compared with test results. • Results of both studies are comparable, which validate finite element methodology. - Abstract: Fuel assembly of the PWR nuclear power plant is a long and flexible structure. This study has been made in an attempt to find the structural integrity of the fuel assembly (FA) of Chashma Nuclear Power Plant-1 (CHASNUPP-1) at room temperature in air. Non-linear contact and buckling analyses have been performed using ANSYS 13.0, in-order to determine the FA's deformation behaviour as well as the location/values of the maximum stress intensity and stresses developed in axial direction under applied compression load of 7350 N or 1.6 g being the FA's handling load (Zhang et al., 1994). The finite element (FE) model comprises spacer grids, fuel rods, flexible contact between the fuel rods and grids’ supports system (springs and dimples) and guide thimbles with dash-pots and flow holes, in addition to the spot welds between spacer grids and guide thimbles, has been developed using Shell181, Conta174 and Targe170 elements. FA is a non-straight structure. The actual behaviour of the geometry is non-linear. The value of the perturbation force is related to the geometry of the model and/or the tolerance defined for the geometry. Therefore, a sensitivity study has been made to determine the appropriate value of an arbitrary perturbation load. It has been observed that FA deformation values obtained through FE analysis and experiment (SNERDI Tech Doc, 1994) under applied compression load are comparable and show linear behaviours. Therefore, it is confirmed that buckling of FA will not occur at the specified load. Moreover, the values of stresses obtained

  8. Structural integrity assessment and stress measurement of CHASNUPP-1 fuel assembly

    International Nuclear Information System (INIS)

    Highlights: • Finite element model of CHASNUPP-1 fuel assembly produced, using Shell181 elements. • Non-linear contact and buckling analysis have been performed. • Structural integrity and stress measurement of fuel assembly is calculated. • Calculated stresses and deformations, are compared with test results. • Results of both studies are comparable, which validate finite element methodology. - Abstract: Fuel assembly of the PWR nuclear power plant is a long and flexible structure. This study has been made in an attempt to find the structural integrity of the fuel assembly (FA) of Chashma Nuclear Power Plant-1 (CHASNUPP-1) at room temperature in air. Non-linear contact and buckling analyses have been performed using ANSYS 13.0, in-order to determine the FA's deformation behaviour as well as the location/values of the maximum stress intensity and stresses developed in axial direction under applied compression load of 7350 N or 1.6 g being the FA's handling load (Zhang et al., 1994). The finite element (FE) model comprises spacer grids, fuel rods, flexible contact between the fuel rods and grids’ supports system (springs and dimples) and guide thimbles with dash-pots and flow holes, in addition to the spot welds between spacer grids and guide thimbles, has been developed using Shell181, Conta174 and Targe170 elements. FA is a non-straight structure. The actual behaviour of the geometry is non-linear. The value of the perturbation force is related to the geometry of the model and/or the tolerance defined for the geometry. Therefore, a sensitivity study has been made to determine the appropriate value of an arbitrary perturbation load. It has been observed that FA deformation values obtained through FE analysis and experiment (SNERDI Tech Doc, 1994) under applied compression load are comparable and show linear behaviours. Therefore, it is confirmed that buckling of FA will not occur at the specified load. Moreover, the values of stresses obtained

  9. Self-Assembled, Iridescent, Crustacean-Mimetic Nanocomposites with Tailored Periodicity and Layered Cuticular Structure.

    Science.gov (United States)

    Wang, Baochun; Walther, Andreas

    2015-11-24

    Natural high-performance materials inspire the pursuit of ordered hard/soft nanocomposite structures at high fractions of reinforcements and with balanced molecular interactions. Herein, we develop a facile, waterborne self-assembly pathway to mimic the multiscale cuticle structure of the crustacean armor by combining hard reinforcing cellulose nanocrystals (CNCs) with soft poly(vinyl alcohol) (PVA). We show iridescent CNC nanocomposites with cholesteric liquid-crystal structure, in which different helical pitches and photonic band gaps can be realized by varying the CNC/PVA ratio. We further show that multilayered crustacean-mimetic materials with tailored periodicity and layered cuticular structure can be obtained by sequential preparation pathways. The transition from a cholesteric to a disordered structure occurs for a critical polymer concentration. Correspondingly, we find a transition from stiff and strong mechanical behavior to materials with increasing ductility. Crack propagation studies using scanning electron microscopy visualize the different crack growth and toughening mechanisms inside cholesteric nanocomposites as a function of the interstitial polymer content for the first time. Different extents of crack deflection, layered delamination, ligament bridging, and constrained microcracking can be observed. Drawing of highly plasticized films sheds light on the mechanistic details of the transition from a cholesteric/chiral nematic to a nematic structure. The study demonstrates how self-assembly of biobased CNCs in combination with suitable polymers can be used to replicate a hierarchical biological structure and how future design of these ordered multifunctional nanocomposites can be optimized by understanding mechanistic details of deformation and fracture. PMID:26372330

  10. 介质壁加速腔加速结构优化%Optimization of accelerating structure in dielectric wall accelerator

    Institute of Scientific and Technical Information of China (English)

    叶茂; 张篁; 刘毅; 王卫; 谌怡; 杨超; 夏连胜; 石金水; 章林文

    2016-01-01

    In the dielectric wall accelerator (DWA),the intensity and the distribution of the axial and radial electric fields generated by the electrode structure are obviously different.In order to enhance the axial accelerating field,improve the accelera-ting gradient and suppress the beam profile expansion caused by the radial electric field,metal grids are embedded in between each accelerating unit.Electromagnetic simulation software based on particle-in-cell method is used to numerically simulate structures with and without metal grids,and to analyze the distribution of electric field as well as the change of the beam profile under differ-ent structures.The experimental results agree well with the simulation outcome,which demonstrate that the DWA with the met-al grid structure has stronger and more uniform axial accelerating field than the DWA without metal grids.Furthermore,for the metal grid structure,the radial electric field is suppressed efficiently and the radial divergence of the accelerated particle beam in free drift space is improved.%为了在介质壁加速器中增大轴向加速电场,提高加速梯度的同时抑制径向电场对束包络的扩张,提出了在每个加速电极上添加金属栅网结构.采用基于粒子云网格方法的电磁粒子模拟软件对不加栅网与添加栅网的电极结构进行了数值仿真,分析了不同结构下加速管道中的电场分布和束包络变化.通过实验对比了两种不同结构下经过相同的加速长度获得的粒子能量.结果表明:添加金属栅网结构相对于不加栅网的金属小孔式结构,轴向加速电场强度提高 20%,同时径向电场得到有效抑制;栅网结构下,被加速的粒子束在自由漂移空间中的径向发散基本得到抑制;在相同的加速长度下加速 H+3 粒子,栅网结构得到的能量增益提高了一倍.

  11. Cryogenic Electron Microscopy Studies: Structure and Formation of Self-assembled Nanostructures in Solution

    Science.gov (United States)

    Lee, Han Seung

    Cryogenic electron microscopy (Cryo-EM) techniques are among the most powerful to characterize self-assembling soft materials (colloids, polymers, and microemulsions, etc.) at the nanometer scale, without any need for implicit models or assumptions about the structure. We can even visualize structure under dynamic conditions, capturing each stage of development. In this thesis, cryo-EM has been used to investigate the formation and structure of a variety of self-assembling soft materials. Visualization is complemented by small angle X-ray scattering (SAXS), dynamic light scattering, and conductivity measurements. In each case, cryo-EM provides new insights, not otherwise available, into the nanostructure development. Self-assembly phenomena at the molecular level are critical to the performance of tremendous number of applied systems ranging from personal care products to industrial products. To evaluate these self-assembled materials, multiple characterization techniques are required. We investigated aggregation behavior of cesium dodecyl sulfate (CsDS) ionic surfactant in aqueous solution. Coupled with the real space data from cryogenic transmission electron microscopy (Cryo-TEM) and the inverse space data from SAXS, the experimental result of CsDS in aqueous solution gave a new insight in CsDS micellar structures and their development as a function of concentration. Cryo-TEM showed the presence of the liquid-like hydrocarbon core in the CsDS micelles and relatively thick shell structures at a low CsDS concentration. The core-shell sphere structure micelle shifted to core-shell cylindrical micelle structure at high concentration. The morphology and structure of paclitaxel silicate (PTX) prodrug, encapsulated with amphiphilic poly(ethylene glycol)-b-poly(lactic-co-glycolic acid) diblock copolymers were studied. The six different silicate PTX prodrug candidates were characterized with cryo-TEM. Direct imaging with cryo-TEM illustrated structure of prodrug

  12. Final Report on "Development and Testing of Advanced Accelerator Structures and Technologies at 11.424 GHz"

    Energy Technology Data Exchange (ETDEWEB)

    Gold, Steven H. [Naval Research Laboratory

    2013-10-13

    This is the final report on the research program ?Development and Testing of Advanced Accelerator Structures and Technologies at 11.424 GHz,? which was carried out by the Naval Research Laboratory (NRL) under Interagency Agreement DE?AI02?01ER41170 with the Department of Energy. The period covered by this report is 15 July 2010 ? 14 July 2013. The program included two principal tasks. Task 1 involved a study of the key physics issues related to the use of high gradient dielectric-loaded accelerating (DLA) structures in rf linear accelerators and was carried out in collaboration with Argonne National Laboratory (ANL) and Euclid Techlabs LLC. Task 2 involved a study of high power active microwave pulse compressors and was carried out in collaboration with Omega-P, Inc. and the Institute of Applied Physics of the Russian Academy of Sciences in Nizhny Novgorod. The studies under Task 1 were focused on rf-induced multipactor and breakdown in externally driven DLA structures at the 200-ns timescale. Suppression of multipactor and breakdown are essential to the practical application of dielectric structures in rf linear accelerators. The structures that were studied were developed by ANL and Euclid Techlabs and their performance was evaluated at high power in the X-band Magnicon Laboratory at NRL. Three structures were designed, fabricated, and tested, and the results analyzed in the first two years of the program: a clamped quartz traveling-wave (TW) structure, a externally copper-coated TW structure, and an externally copper-coated dielectric standing-wave (SW) structure. These structures showed that rf breakdown could be largely eliminated by eliminating dielectric joints in the structures, but that the multipactor loading was omnipresent. In the third year of the program, the focus of the program was on multipactor suppression using a strong applied axial magnetic field, as proposed by Chang et al. [C. Chang et al., J. Appl. Phys. 110, 063304 (2011).], and a

  13. Comparing the structural stability of PbS nanocrystals assembled in fcc and bcc superlattice allotropes.

    Science.gov (United States)

    Bian, Kaifu; Wang, Zhongwu; Hanrath, Tobias

    2012-07-01

    We investigated the structural stability of colloidal PbS nanocrystals (NCs) self-assembled into superlattice (SL) allotropes of either face-centered cubic (fcc) or body-centered cubic (bcc) symmetry. Small-angle X-ray scattering analysis showed that the NC packing density is higher in the bcc than in the fcc SL; this is a manifestation of the cuboctahedral shape of the NC building block. Using the high-pressure rock-salt/orthorhombic phase transition as a stability indicator, we discovered that the transition pressure for NCs in a bcc SL occurs at 8.5 GPa, which is 1.5 GPa higher than the transition pressure (7.0 GPa) observed for a fcc SL. The higher structural stability in the bcc SL is attributed primarily to the effective absorption of loading force in specific SL symmetry and to a lesser extent to the surface energy of the NCs. The experimental results provide new insights into the fundamental relationship between the symmetry of the self-assembled SL and the structural stability of the constituent NCs.

  14. Making a Self-feeding Structure by Assembly of Digital Organs

    Science.gov (United States)

    Cussat-Blanc, Sylvain; Luga, Hervé; Duthen, Yves

    In Nature, the intrinsic cooperation between organism's parts is capital. Most living systems are composed of organs, functional units specialized for specific actions. In our last research, we developed an evolutionary model able to generate artificial organs. This paper deals with the assembly of organs. We show, through experimentation, the development of an artificial organism composed of four digital organs able to produce a self-feeding organism. This kind of structure has applications in the mophogenetic-engineering of future nano and bio robots.

  15. Assembl y of Poly-3-Hexylthiophene Nano-Crystallites into Low Dimensional Structures Using Indandione Derivatives

    Directory of Open Access Journals (Sweden)

    Amir Fahmi

    2013-02-01

    Full Text Available Conductive polymer poly-3-hexylthiophene (P3HT needles were self-assembled using a second component (indandione derivatives as a linking agent to enhance their long range alignment. The morphologies of the hybrid organic/organic materials were characterized by transmission electron microscopy (TEM. Both linear and branched structures could be produced, with the degree of branching depending upon the linker used. Incorporation of indandione derivatives broadened the UV absorbance band of P3HT without significant change to its photoluminescence. This hybrid material could open a promising avenue in photovoltaic applications due to its interesting morphologies and optical properties.

  16. Acceleration of solar wind ions to 1 MeV by electromagnetic structures upstream of the Earth's bow shock

    CERN Document Server

    Stasiewicz, K; Eliasson, B; Strumik, M; Yamauchi, M

    2013-01-01

    We present measurements from the ESA/NASA Cluster mission that show in situ acceleration of ions to energies of 1 MeV outside the bow shock. The observed heating can be associated with the presence of electromagnetic structures with strong spatial gradients of the electric field that lead to ion gyro-phase breaking and to the onset of chaos in ion trajectories. It results in rapid, stochastic acceleration of ions in the direction perpendicular to the ambient magnetic field. The electric potential of the structures can be compared to a field of moguls on a ski slope, capable of accelerating and ejecting the fast running skiers out of piste. This mechanism may represent the universal mechanism for perpendicular acceleration and heating of ions in the magnetosphere, the solar corona and in astrophysical plasmas. This is also a basic mechanism that can limit steepening of nonlinear electromagnetic structures at shocks and foreshocks in collisionless plasmas.

  17. GeauxDock: Accelerating Structure-Based Virtual Screening with Heterogeneous Computing.

    Science.gov (United States)

    Fang, Ye; Ding, Yun; Feinstein, Wei P; Koppelman, David M; Moreno, Juana; Jarrell, Mark; Ramanujam, J; Brylinski, Michal

    2016-01-01

    Computational modeling of drug binding to proteins is an integral component of direct drug design. Particularly, structure-based virtual screening is often used to perform large-scale modeling of putative associations between small organic molecules and their pharmacologically relevant protein targets. Because of a large number of drug candidates to be evaluated, an accurate and fast docking engine is a critical element of virtual screening. Consequently, highly optimized docking codes are of paramount importance for the effectiveness of virtual screening methods. In this communication, we describe the implementation, tuning and performance characteristics of GeauxDock, a recently developed molecular docking program. GeauxDock is built upon the Monte Carlo algorithm and features a novel scoring function combining physics-based energy terms with statistical and knowledge-based potentials. Developed specifically for heterogeneous computing platforms, the current version of GeauxDock can be deployed on modern, multi-core Central Processing Units (CPUs) as well as massively parallel accelerators, Intel Xeon Phi and NVIDIA Graphics Processing Unit (GPU). First, we carried out a thorough performance tuning of the high-level framework and the docking kernel to produce a fast serial code, which was then ported to shared-memory multi-core CPUs yielding a near-ideal scaling. Further, using Xeon Phi gives 1.9× performance improvement over a dual 10-core Xeon CPU, whereas the best GPU accelerator, GeForce GTX 980, achieves a speedup as high as 3.5×. On that account, GeauxDock can take advantage of modern heterogeneous architectures to considerably accelerate structure-based virtual screening applications. GeauxDock is open-sourced and publicly available at www.brylinski.org/geauxdock and https://figshare.com/articles/geauxdock_tar_gz/3205249. PMID:27420300

  18. GeauxDock: Accelerating Structure-Based Virtual Screening with Heterogeneous Computing

    Science.gov (United States)

    Fang, Ye; Ding, Yun; Feinstein, Wei P.; Koppelman, David M.; Moreno, Juana; Jarrell, Mark; Ramanujam, J.; Brylinski, Michal

    2016-01-01

    Computational modeling of drug binding to proteins is an integral component of direct drug design. Particularly, structure-based virtual screening is often used to perform large-scale modeling of putative associations between small organic molecules and their pharmacologically relevant protein targets. Because of a large number of drug candidates to be evaluated, an accurate and fast docking engine is a critical element of virtual screening. Consequently, highly optimized docking codes are of paramount importance for the effectiveness of virtual screening methods. In this communication, we describe the implementation, tuning and performance characteristics of GeauxDock, a recently developed molecular docking program. GeauxDock is built upon the Monte Carlo algorithm and features a novel scoring function combining physics-based energy terms with statistical and knowledge-based potentials. Developed specifically for heterogeneous computing platforms, the current version of GeauxDock can be deployed on modern, multi-core Central Processing Units (CPUs) as well as massively parallel accelerators, Intel Xeon Phi and NVIDIA Graphics Processing Unit (GPU). First, we carried out a thorough performance tuning of the high-level framework and the docking kernel to produce a fast serial code, which was then ported to shared-memory multi-core CPUs yielding a near-ideal scaling. Further, using Xeon Phi gives 1.9× performance improvement over a dual 10-core Xeon CPU, whereas the best GPU accelerator, GeForce GTX 980, achieves a speedup as high as 3.5×. On that account, GeauxDock can take advantage of modern heterogeneous architectures to considerably accelerate structure-based virtual screening applications. GeauxDock is open-sourced and publicly available at www.brylinski.org/geauxdock and https://figshare.com/articles/geauxdock_tar_gz/3205249. PMID:27420300

  19. GeauxDock: Accelerating Structure-Based Virtual Screening with Heterogeneous Computing.

    Directory of Open Access Journals (Sweden)

    Ye Fang

    Full Text Available Computational modeling of drug binding to proteins is an integral component of direct drug design. Particularly, structure-based virtual screening is often used to perform large-scale modeling of putative associations between small organic molecules and their pharmacologically relevant protein targets. Because of a large number of drug candidates to be evaluated, an accurate and fast docking engine is a critical element of virtual screening. Consequently, highly optimized docking codes are of paramount importance for the effectiveness of virtual screening methods. In this communication, we describe the implementation, tuning and performance characteristics of GeauxDock, a recently developed molecular docking program. GeauxDock is built upon the Monte Carlo algorithm and features a novel scoring function combining physics-based energy terms with statistical and knowledge-based potentials. Developed specifically for heterogeneous computing platforms, the current version of GeauxDock can be deployed on modern, multi-core Central Processing Units (CPUs as well as massively parallel accelerators, Intel Xeon Phi and NVIDIA Graphics Processing Unit (GPU. First, we carried out a thorough performance tuning of the high-level framework and the docking kernel to produce a fast serial code, which was then ported to shared-memory multi-core CPUs yielding a near-ideal scaling. Further, using Xeon Phi gives 1.9× performance improvement over a dual 10-core Xeon CPU, whereas the best GPU accelerator, GeForce GTX 980, achieves a speedup as high as 3.5×. On that account, GeauxDock can take advantage of modern heterogeneous architectures to considerably accelerate structure-based virtual screening applications. GeauxDock is open-sourced and publicly available at www.brylinski.org/geauxdock and https://figshare.com/articles/geauxdock_tar_gz/3205249.

  20. GeauxDock: Accelerating Structure-Based Virtual Screening with Heterogeneous Computing.

    Science.gov (United States)

    Fang, Ye; Ding, Yun; Feinstein, Wei P; Koppelman, David M; Moreno, Juana; Jarrell, Mark; Ramanujam, J; Brylinski, Michal

    2016-01-01

    Computational modeling of drug binding to proteins is an integral component of direct drug design. Particularly, structure-based virtual screening is often used to perform large-scale modeling of putative associations between small organic molecules and their pharmacologically relevant protein targets. Because of a large number of drug candidates to be evaluated, an accurate and fast docking engine is a critical element of virtual screening. Consequently, highly optimized docking codes are of paramount importance for the effectiveness of virtual screening methods. In this communication, we describe the implementation, tuning and performance characteristics of GeauxDock, a recently developed molecular docking program. GeauxDock is built upon the Monte Carlo algorithm and features a novel scoring function combining physics-based energy terms with statistical and knowledge-based potentials. Developed specifically for heterogeneous computing platforms, the current version of GeauxDock can be deployed on modern, multi-core Central Processing Units (CPUs) as well as massively parallel accelerators, Intel Xeon Phi and NVIDIA Graphics Processing Unit (GPU). First, we carried out a thorough performance tuning of the high-level framework and the docking kernel to produce a fast serial code, which was then ported to shared-memory multi-core CPUs yielding a near-ideal scaling. Further, using Xeon Phi gives 1.9× performance improvement over a dual 10-core Xeon CPU, whereas the best GPU accelerator, GeForce GTX 980, achieves a speedup as high as 3.5×. On that account, GeauxDock can take advantage of modern heterogeneous architectures to considerably accelerate structure-based virtual screening applications. GeauxDock is open-sourced and publicly available at www.brylinski.org/geauxdock and https://figshare.com/articles/geauxdock_tar_gz/3205249.

  1. Accelerated electronic structure-based molecular dynamics simulations of shock-induced chemistry

    Science.gov (United States)

    Cawkwell, Marc

    2015-06-01

    The initiation and progression of shock-induced chemistry in organic materials at moderate temperatures and pressures are slow on the time scales available to regular molecular dynamics simulations. Accessing the requisite time scales is particularly challenging if the interatomic bonding is modeled using accurate yet expensive methods based explicitly on electronic structure. We have combined fast, energy conserving extended Lagrangian Born-Oppenheimer molecular dynamics with the parallel replica accelerated molecular dynamics formalism to study the relatively sluggish shock-induced chemistry of benzene around 13-20 GPa. We model interatomic bonding in hydrocarbons using self-consistent tight binding theory with an accurate and transferable parameterization. Shock compression and its associated transient, non-equilibrium effects are captured explicitly by combining the universal liquid Hugoniot with a simple shrinking-cell boundary condition. A number of novel methods for improving the performance of reactive electronic structure-based molecular dynamics by adapting the self-consistent field procedure on-the-fly will also be discussed. The use of accelerated molecular dynamics has enabled us to follow the initial stages of the nucleation and growth of carbon clusters in benzene under thermodynamic conditions pertinent to experiments.

  2. Methodology for the structural design of single spoke accelerating cavities at Fermilab

    Science.gov (United States)

    Passarelli, Donato; Wands, Robert H.; Merio, Margherita; Ristori, Leonardo

    2016-10-01

    Fermilab is planning to upgrade its accelerator complex to deliver a more powerful and intense proton-beam for neutrino experiments. In the framework of the so-called Proton Improvement Plan-II (PIP-II), we are designing and developing a cryomodule containing superconducting accelerating cavities, the Single Spoke Resonators of type 1 (SSR1). In this paper, we present the sequence of analysis and calculations performed for the structural design of these cavities, using the rules of the American Society of Mechanical Engineers (ASME) Boiler and Pressure Vessel Code (BPVC). The lack of an accepted procedure for addressing the design, fabrication, and inspection of such unique pressure vessels makes the task demanding and challenging every time. Several factors such as exotic materials, unqualified brazing procedures, limited nondestructive examination, and the general R&D nature of these early generations of cavity design, conspire to make it impractical to obtain full compliance with all ASME BPVC requirements. However, the presented approach allowed us to validate the design of this new generation of single spoke cavities with values of maximum allowable working pressure that exceeds the safety requirements. This set of rules could be used as a starting point for the structural design and development of similar objects.

  3. 2D and 3D multipactor modeling in dielectric-loaded accelerator structures

    Science.gov (United States)

    Sinitsyn, Oleksandr; Nusinovich, Gregory; Antonsen, Thomas

    2010-11-01

    Multipactor (MP) is known as the avalanche growth of the number of secondary electrons emitted from a solid surface exposed to an RF electric field under vacuum conditions. MP is a severe problem in modern rf systems and, therefore, theoretical and experimental studies of MP are of great interest to the researchers working in various areas of physics and engineering. In this work we present results of MP studies in dielectric-loaded accelerator (DLA) structures. First, we show simulation results obtained with the use of the 2D self-consistent MP model (O. V. Sinitsyn, et. al., Phys. Plasmas, vol. 16, 073102 (2009)) and compare those to experimental ones obtained during recent extensive studies of DLA structures performed by Argonne National Laboratory, Naval Research Laboratory, SLAC National Accelerator Laboratory and Euclid TechLabs (C. Jing, et al., IEEE Trans. Plasma Sci., vol. 38, pp. 1354-1360 (2010)). Then we present some new results of 3D analysis of MP which include studies of particle trajectories and studies of MP development at the early stage.

  4. The African and Pacific Superplume Structures Constrained by Assembly and Breakup of Pangea

    Science.gov (United States)

    Zhang, N.; Zhong, S.; Leng, W.; Li, Z.

    2009-12-01

    African hemisphere before the assembly of Pangea is predominated by the cold downwelling structure resulting from plate convergence between Gondwana and Laurussia and the cold Africa hemisphere changes to hot due to the return flows from the circum-Pangea subduction after Pangea formation. Based on our results, we suggest that the African superplume structure may be formed no earlier than ~230 Ma ago (i.e., ~100 Ma after the assembly of Pangea).

  5. Investigating the Structure-Property Relationships of Aqueous Self-Assembled Materials

    Science.gov (United States)

    Krogstad, Daniel Vincent

    The components of all living organisms are formed through aqueous self-assembly of organic and inorganic materials through physical interactions including hydrophobic, electrostatic, and hydrogen bonding. In this dissertation, these physical interactions were exploited to develop nanostructured materials for a range of applications. Peptide amphiphiles (PAs) self-assemble into varying structures depending on the physical interactions of the peptides and tails. PA aggregation was investigated by cryo-TEM to provide insight on the effects of varying parameters, including the number and length of the lipid tails as well as the number, length, charge, hydrophobicity, and the hydrogen bonding ability of the peptides. It was determined that cylindrical micelles are most commonly formed, and that specific criteria must be met in order to form spherical micelles, nanoribbons, vesicles or less ordered aggregates. Controlling the aggregated structure is necessary for many applications---particularly in therapeutics. Additionally, two-headed PAs were designed to act as a catalyst and template for biomimetic mineralization to control the formation of inorganic nanomaterials. Finally, injectable hydrogels made from ABA triblock copolymers were synthesized with the A blocks being functionalized with either guanidinium or sulfonate groups. These oppositely charged polyelectrolyte endblocks formed complex coacervate domains, which served as physical crosslinks in the hydrogel network. The mechanical properties, the network structure, the nature of the coacervate domain and the kinetics of hydrogel formation were investigated as a function of polymer concentration, salt concentration, pH and stoichiometry with rheometry, SAXS and SANS. It was shown that the mechanical properties of the hydrogels was highly dependent on the structural organization of the coacervate domains and that the properties could be tuned with polymer and salt concentration. Polymer and salt concentration were

  6. Convergence acceleration for partitioned simulations of the fluid-structure interaction in arteries

    Science.gov (United States)

    Radtke, Lars; Larena-Avellaneda, Axel; Debus, Eike Sebastian; Düster, Alexander

    2016-06-01

    We present a partitioned approach to fluid-structure interaction problems arising in analyses of blood flow in arteries. Several strategies to accelerate the convergence of the fixed-point iteration resulting from the coupling of the fluid and the structural sub-problem are investigated. The Aitken relaxation and variants of the interface quasi-Newton -least-squares method are applied to different test cases. A hybrid variant of two well-known variants of the interface quasi-Newton-least-squares method is found to perform best. The test cases cover the typical boundary value problem faced when simulating the fluid-structure interaction in arteries, including a strong added mass effect and a wet surface which accounts for a large part of the overall surface of each sub-problem. A rubber-like Neo Hookean material model and a soft-tissue-like Holzapfel-Gasser-Ogden material model are used to describe the artery wall and are compared in terms of stability and computational expenses. To avoid any kind of locking, high-order finite elements are used to discretize the structural sub-problem. The finite volume method is employed to discretize the fluid sub-problem. We investigate the influence of mass-proportional damping and the material model chosen for the artery on the performance and stability of the acceleration strategies as well as on the simulation results. To show the applicability of the partitioned approach to clinical relevant studies, the hemodynamics in a pathologically deformed artery are investigated, taking the findings of the test case simulations into account.

  7. Structural behaviour of fuel assemblies for water cooled reactors. Proceedings of a technical meeting

    International Nuclear Information System (INIS)

    At the invitation of the Government of France and in response to a proposal of the IAEA Technical Working Group on Water Reactor Fuel Performance and Technology (TWGFPT), the IAEA convened a Technical Meeting on Fuel Assembly Structural Behaviour in Cadarache, France, from 22 to 26 November 2004. The meeting was hosted by the CEA Cadarache Centre, AREVA Framatome-ANP and Electricite de France. The meeting aimed to provide in depth technical exchanges on PWR and WWER operational experience in the field of fuel assembly mechanical behaviour and the potential impact of future high burnup fuel management on fuel reliability. It addressed in-service experience and remedial solutions, loop testing experience, qualification and damage assessment methods (analytic or experimental ones), mechanical behaviour of the fuel assembly including dynamic and fluid structure interaction aspects, modelling and numerical analysis methods, and impact of the in-service evolution of the structural materials. Sixty-seven participants from 17 countries presented 30 papers in the course of four sessions. The topics covered included the impact of hydraulic loadings on fuel assembly (FA)performance, FA bow and control rod (CR) drop kinetics, vibrations and rod-to-grid wear and fretting, and, finally, evaluation and modelling of accident conditions, mainly from seismic causes. FA bow, CR drop kinetics and hydraulics are of great importance under conditions of higher fuel duties including burnup increase, thermal uprates and longer fuel cycles. Vibrations and rod-to-grid wear and fretting have been identified as a key cause of fuel failure at PWRs during the past several years. The meeting demonstrated that full-scale hydraulic tests and modelling provide sufficient information to develop remedies to increase FA skeleton resistance to hydraulic loads, including seismic ones, vibrations and wear. These proceedings are presented as a book with an attached CD-ROM. The first part of the CD

  8. Understanding the structure and performance of self-assembled triblock terpolymer membranes

    KAUST Repository

    Pendergast, MaryTheresa M.

    2013-10-01

    Nanoporous membranes represent a possible route towards more precise particle and macromolecular separations, which are of interest across many industries. Here, we explored membranes with vertically-aligned nanopores formed from a poly(isoprene-. b-styrene-. b-4 vinyl pyridine) (ISV) triblock terpolymer via a hybrid self-assembly/nonsolvent induced phase separation process (S-NIPS). ISV concentration, solvent composition, and evaporation time in the S-NIPS process were varied to tailor ordering of the selective layer and produce enhanced water permeability. Here, water permeability was doubled over previous versions of ISV membranes. This was achieved by increasing volatile solvent concentration, thereby decreasing the evaporation period required for self-assembly. Fine-tuning was required, however, since overly-rapid evaporation did not yield the desired pore structure. Transport models, used to relate the in-. situ structure to the performance of these materials, revealed narrowing of pores and blocking by the dense region below. It was shown that these vertically aligned nanoporous membranes compare favorably with commercial ultrafiltration membranes formed by NIPS and track-etching processes, which suggests that there is practical value in further developing and optimizing these materials for specific industrial separations. © 2013 Elsevier B.V.

  9. Post-directed-self-assembly membrane fabrication for in situ analysis of block copolymer structures

    Science.gov (United States)

    Ren, J.; Ocola, L. E.; Divan, R.; Czaplewski, D. A.; Segal-Peretz, T.; Xiong, S.; Kline, R. J.; Arges, C. G.; Nealey, P. F.

    2016-10-01

    Full characterization of the three-dimensional structures resulting from the directed self-assembly (DSA) of block copolymers (BCP) remains a difficult challenge. Transmission electron microscope (TEM) tomography and resonant soft x-ray scattering have emerged as powerful and complementary methods for through-film characterization; both techniques require samples to be prepared on specialized membrane substrates. Here we report a generalizable process to implement BCP DSA with density multiplication on silicon nitride membranes. A key feature of the process developed here is that it does not introduce any artefacts or damage to the polymer assemblies as DSA is performed prior to back-etched membrane formation. Because most research and applications of BCP lithography are based on silicon substrates, process variations introduced by implementing DSA on a silicon nitride/silicon stack versus silicon were identified and mitigated. Using full-wafers, membranes were fabricated with different sizes and layouts to enable both TEM and x-ray characterization. Finally, both techniques were used to characterize structures resulting from the DSA of lamella-forming BCP with density multiplication.

  10. Assembly of alginate microfibers to form a helical structure using micromanipulation with a magnetic field

    Science.gov (United States)

    Sun, Tao; Huang, Qiang; Shi, Qing; Wang, Huaping; Hu, Chengzhi; Li, Pengyun; Nakajima, Masahiro; Fukuda, Toshio

    2016-10-01

    Helical structures assembled using alginate microfibers have a promising spatial architecture mimicking in vivo vessels for culturing vascular cells. However, the helical structure can only be assembled at the macroscale, since a microassembly-based approach has not yet been developed. In this paper, we propose a magnetic-field-based micromanipulation method to fabricate a helical microstructure. By microfluidic spinning, alginate microfibers encapsulating magnetic nanoparticles are synthesized to enable the control of an electromagnetic needle (EMN). We developed a microrobotic system to actuate a micropipette to fix a free end of the microfiber, and then move the EMN to reel the microfiber around a micropillar. The motion of the EMN is guided using an upright microscope and a side-view camera. Because of the limitation of operation space, a spacer sleeve was designed to keep the tip of the EMN attracted to the microfiber, and simultaneously to keep the other part of the EMN isolated from the microfiber. To ensure the availability of the microfiber for continuously coiling, we enable the EMN tip to slide on the surface of the microfiber without changing the tensioning of the microfiber for positioning control. Furthermore, stable and repeatable micromanipulation was achieved to form multi-turn microfiber coils based on the motion planning of the EMN. Finally, we successfully fabricated a helical microstructure that can be applied in vascular tissue engineering in the future.

  11. Self-assembly of saponite nanoparticles originated from nano-layered structure

    Directory of Open Access Journals (Sweden)

    Sato K.

    2013-09-01

    Full Text Available The mechanism of self-assembly induced by H2O molecules is studied for layered saponite nanoparticles and zeolite with the cage structure by means of positronium (Ps annihilation spectroscopy together with thermogravimetry and differential thermal analysis (TG-DTA. Prior to hydration the saponite exhibits two kinds of open spaces with their sizes of ∼3 Å and ∼9 Å, whereas open spaces with their sizes of ∼3 Å and ∼5 Å corresponding to β and α cages are obtained for the zeolite. The occupation of both α and β cages by H2O molecules proceeds along with hydration up to 2.5 h, which well synchronizes with the weight gain in TG data. On the contrary, the angstrom-scale open spaces for the saponite vary with hydration in the time scale with ∼100 h much longer than that of TG-DTA with ∼8 h. The present results suggest that the long-term self assembly originates from not the cage but the nanolayered structures.

  12. Thermally-nucleated self-assembly of water and alcohol into stable structures at hydrophobic interfaces

    Science.gov (United States)

    Voïtchovsky, Kislon; Giofrè, Daniele; José Segura, Juan; Stellacci, Francesco; Ceriotti, Michele

    2016-01-01

    At the interface with solids, the mobility of liquid molecules tends to be reduced compared with bulk, often resulting in increased local order due to interactions with the surface of the solid. At room temperature, liquids such as water and methanol can form solvation structures, but the molecules remain highly mobile, thus preventing the formation of long-lived supramolecular assemblies. Here we show that mixtures of water with methanol can form a novel type of interfaces with hydrophobic solids. Combining in situ atomic force microscopy and multiscale molecular dynamics simulations, we identify solid-like two-dimensional interfacial structures that nucleate thermally, and are held together by an extended network of hydrogen bonds. On graphite, nucleation occurs above ∼35 °C, resulting in robust, multilayered nanoscopic patterns. Our findings could have an impact on many fields where water-alcohol mixtures play an important role such as fuel cells, chemical synthesis, self-assembly, catalysis and surface treatments. PMID:27713413

  13. Complete Structure of an Epithelial Keratin Dimer: Implications for Intermediate Filament Assembly

    Science.gov (United States)

    Bray, David J.; Walsh, Tiffany R.; Noro, Massimo G.; Notman, Rebecca

    2015-01-01

    Keratins are cytoskeletal proteins that hierarchically arrange into filaments, starting with the dimer sub-unit. They are integral to the structural support of cells, in skin, hair and nails. In skin, keratin is thought to play a critical role in conferring the barrier properties and elasticity of skin. In general, the keratin dimer is broadly described by a tri-domain structure: a head, a central rod and a tail. As yet, no atomistic-scale picture of the entire dimer structure exists; this information is pivotal for establishing molecular-level connections between structure and function in intermediate filament proteins. The roles of the head and tail domains in facilitating keratin filament assembly and function remain as open questions. To address these, we report results of molecular dynamics simulations of the entire epithelial human K1/K10 keratin dimer. Our findings comprise: (1) the first three-dimensional structural models of the complete dimer unit, comprising of the head, rod and tail domains; (2) new insights into the chirality of the rod-domain twist gained from analysis of the full domain structure; (3) evidence for tri-subdomain partitioning in the head and tail domains; and, (4) identification of the residue characteristics that mediate non-covalent contact between the chains in the dimer. Our findings are immediately applicable to other epithelial keratins, such as K8/K18 and K5/K14, and to intermediate filament proteins in general. PMID:26181054

  14. Self-assembly of three-dimensional prestressed tensegrity structures from DNA

    Science.gov (United States)

    Liedl, Tim; Högberg, Björn; Tytell, Jessica; Ingber, Donald E.; Shih, William M.

    2010-07-01

    Tensegrity, or tensional integrity, is a property of a structure indicating a reliance on a balance between components that are either in pure compression or pure tension for stability. Tensegrity structures exhibit extremely high strength-to-weight ratios and great resilience, and are therefore widely used in engineering, robotics and architecture. Here, we report nanoscale, prestressed, three-dimensional tensegrity structures in which rigid bundles of DNA double helices resist compressive forces exerted by segments of single-stranded DNA that act as tension-bearing cables. Our DNA tensegrity structures can self-assemble against forces up to 14 pN, which is twice the stall force of powerful molecular motors such as kinesin or myosin. The forces generated by this molecular prestressing mechanism can be used to bend the DNA bundles or to actuate the entire structure through enzymatic cleavage at specific sites. In addition to being building blocks for nanostructures, tensile structural elements made of single-stranded DNA could be used to study molecular forces, cellular mechanotransduction and other fundamental biological processes.

  15. Complete Structure of an Epithelial Keratin Dimer: Implications for Intermediate Filament Assembly.

    Directory of Open Access Journals (Sweden)

    David J Bray

    Full Text Available Keratins are cytoskeletal proteins that hierarchically arrange into filaments, starting with the dimer sub-unit. They are integral to the structural support of cells, in skin, hair and nails. In skin, keratin is thought to play a critical role in conferring the barrier properties and elasticity of skin. In general, the keratin dimer is broadly described by a tri-domain structure: a head, a central rod and a tail. As yet, no atomistic-scale picture of the entire dimer structure exists; this information is pivotal for establishing molecular-level connections between structure and function in intermediate filament proteins. The roles of the head and tail domains in facilitating keratin filament assembly and function remain as open questions. To address these, we report results of molecular dynamics simulations of the entire epithelial human K1/K10 keratin dimer. Our findings comprise: (1 the first three-dimensional structural models of the complete dimer unit, comprising of the head, rod and tail domains; (2 new insights into the chirality of the rod-domain twist gained from analysis of the full domain structure; (3 evidence for tri-subdomain partitioning in the head and tail domains; and, (4 identification of the residue characteristics that mediate non-covalent contact between the chains in the dimer. Our findings are immediately applicable to other epithelial keratins, such as K8/K18 and K5/K14, and to intermediate filament proteins in general.

  16. Structural investigations of self-assembled monolayers for organic electronics: results from X-ray reflectivity.

    Science.gov (United States)

    Khassanov, Artoem; Steinrück, Hans-Georg; Schmaltz, Thomas; Magerl, Andreas; Halik, Marcus

    2015-07-21

    Self-assembled monolayers (SAMs) have been established as crucial interlayers and electronically active layers in organic electronic devices, such as organic light emitting diodes (OLEDs), organic photovoltaics (OPVs), organic thin film transistors (OTFTs), and nonvolatile memories (NVMs). The use of self-assembling functionalized organic molecules is beneficial due to mainly three advantages compared with common thin film deposition approaches. (1) Molecular self-assembly occurs with surface selectivity, determined by the interaction between the functional anchor group of the organic molecules and the target surface. (2) The film thickness of the resulting layers is perfectly controllable on the angstrom scale, due to the self-terminating film formation to only a single molecular layer. And finally, (3) the wide variability in the chemical structure of such molecules enables different SAM functionalities for devices, ranging from electrical insulation to charge storage to charge transport. The SAM approach can be further expanded by employing several functionalized molecules to create mixed SAMs with consequently mixed properties. The function of SAMs in devices depends not only on the chemical structure of the molecules but also on their final arrangement and orientation on the surface. A reliable and nondestructive in-depth characterization of SAMs on nonconductive oxide surfaces is still challenging because of the very small thickness and the impracticality of methods such as scanning tunneling microscopy (STM) and X-ray photoelectron spectroscopy (XPS). In this Account, we illustrate how X-ray reflectivity (XRR) provides analytical access to major questions of SAM composition, morphology, and even formation by means of investigations of pure and mixed SAMs based on phosphonic acids (PAs) of various chain structures on flat alumina (AlOx) surfaces. XRR is an analytical method that provides access to spatially averaged structural depth profiles over a relatively

  17. Genesis of the "Critical-Acceleration of MOND" and Its Role in "Formation of Structures"

    Directory of Open Access Journals (Sweden)

    Tank H. K.

    2012-10-01

    Full Text Available As an attempt to explain the “flattening of galaxies rotation-curves”, Milgrom proposed a Modification of Newtonian Dynamics MOND, in which he needed a new constant of nature a 0 , termed as “critical-acceleration-of MOND”, in his best-fit empirical formula. But so far it has been an ad-hoc introduction of a new constant. Whereas this article pro- poses: (i a genesis of this constant; (ii explains its recurrences in various physical sit- uations; and (iii its role in determining the size and radii of various structures, like: the electron, the proton, the nucleus-of-atom, the globular-clusters, the spiral-galaxies, the galactic-clusters and the whole universe. In this process we get a new interpretation of “the cosmological-red-shift”, that the linear part of the cosmological-red-shift may not be due to “metric-expansion-of-space”; and even the currently-believed “accelerated- expansion” may be slowing down with time.

  18. Selection of flowing liquid lead target structural materials for accelerator driven transmutation applications

    International Nuclear Information System (INIS)

    The beam entry window and container for a liquid lead spallation target will be exposed to high fluxes of protons and neutrons that are both higher in magnitude and energy than have been experienced in proton accelerators and fission reactors, as well as in a corrosive environment. The structural material of the target should have a good compatibility with liquid lead, a sufficient mechanical strength at elevated temperatures, a good performance under an intense irradiation environment, and a low neutron absorption cross section; these factors have been used to rank the applicability of a wide range of materials for structural containment Nb-1Zr has been selected for use as the structural container for the LANL ABC/ATW molten lead target. Corrosion and mass transfer behavior for various candidate structural materials in liquid lead are reviewed, together with the beneficial effects of inhibitors and various coatings to protect substrate against liquid lead corrosion. Mechanical properties of some candidate materials at elevated temperatures and the property changes resulting from 800 MeV proton irradiation are also reviewed

  19. Diffusion bonding and brazing of high purity copper for linear collider accelerator structures

    Science.gov (United States)

    Elmer, J. W.; Klingmann, J.; van Bibber, K.

    2001-05-01

    is proposed for fabricating the NLC structures. The structure would be assembled with pure silver braze inserts using a self-aligning step joint design, then the assembly would be vacuum diffusion bonded at 700 °C and 3.45 MPa pressure to seal the critical inner portion of the assembly. Finally, during the same furnace cycle, the temperature would be increased to 800 °C in order to react the silver with the copper to form a liquid braze alloy that would join and seal the outer portion of the cells together.

  20. Morphology and structural dynamics of amyloid beta 42 assembly in vitro

    Institute of Scientific and Technical Information of China (English)

    Ying Zhang; Jinsheng He; Shuhan Guo; Jingdong Song; Jianguo Gu; Tao Hong

    2011-01-01

    Amyloid β42 (Aβ42) aggregation plays a key role in the pathogenesis of Alzheimer's disease.However, the morphology and structural dynamics in different stages of Aβ42 assembly are not well known.To investigate the dynamic properties of morphological and structural changes in the aggregation process of A(3 in vitro, transmission electron microscopy, western blot analysis and circular dichroism were used to observe the changes in morphology, immunoreactivity and secondary structure during Ap aggregation, respectively.Results demonstrated that at 24 hours following Ap42 aggregation in vitro, the structures of spherical granules from 5 to 10 nm and coils from 20 to 30 nm were visualized by transmission electron microscopy.Different immunoreactivities of the oligomers and fibers were detected by western blot analysis.The dynamic changes of the a-helix to β-sheet were confirmed by circular dichroism spectra.The dynamic properties of the morphological and structural changes in the aggregation process of Aβ42 in vitro were analyzed,which contributed to the identification of stable conditions of Aβ42 oligomer formation.

  1. Molecular Structure of RADA16-I Designer Self-Assembling Peptide Nanofibers

    Science.gov (United States)

    Cormier, Ashley R.; Pang, Xiaodong; Zimmerman, Maxwell I.; Zhou, Huan-Xiang; Paravastu, Anant K.

    2013-01-01

    The designer self-assembling peptide RADA16-I forms nanofiber matrices which have shown great promise for regenerative medicine and 3-dimensional cell culture. RADA16-I has a β-strand-promoting alternating hydrophobic/charged motif, but arrangement of β-strands into the nanofiber structure has not been previously determined. Here we present a structural model of RADA16-I nanofibers, based on solid-state NMR measurements on samples with different schemes for 13C isotopic labeling. NMR peak positions and line widths indicate an ordered structure composed of β-strands. The NMR data show that the nanofibers are composed of two stacked β-sheets stabilized by a hydrophobic core formed by alanine sidechains, consistent with previous proposals. However, the previously proposed antiparallel β-sheet structure is ruled out by 13C-13C dipolar couplings. Instead, neighboring β-strands within β-sheets are parallel, with a registry shift that allows for cross-strand staggering of oppositely charged arginine and aspartate sidechains. The resulting structural model is compared to nanofiber dimensions observed via images taken by transmission electron microscopy and atomic force microscopy. Multiple NMR peaks for each alanine sidechain were observed and could be attributed to multiple configurations of sidechain packing within a single scheme for intermolecular packing. PMID:23977885

  2. Modeling the alternative oxidase from the human pathogen Blastocystis using automated hybrid structural template assembly

    Directory of Open Access Journals (Sweden)

    Standley DM

    2012-01-01

    Full Text Available Daron M Standley1, Mark van der Giezen21Laboratory of Systems Immunology, World Premier International Immunology Frontier Research Center, Osaka University, Osaka, Japan; 2Centre for Eukaryotic Evolutionary Microbiology, Biosciences, College of Life and Environmental Sciences, University of Exeter, Exeter, UKAbstract: Alternative oxidases (AOX of human parasites represent attractive drug targets due to their absence in humans. However, the lack of a structure has prevented structure-based drug design. Moreover, a large helical insertion proves difficult for automated structural modeling efforts. We have used a novel hybrid structural modeling approach to generate a model that is globally consistent with a previous model but based on a phylogenetically closer template and systematic sampling of known fragments in the helical insertion. Our model, in agreement with site-directed mutagenesis studies, clearly assigns E200 as the iron-ligating residue as opposed to the previously suggested E201. Crystallization of AOX from another species has recently been reported suggesting that our blind prediction can be independently validated in the near future.Keywords: homology modeling, protein structure, blind prediction, fragment assembly, active site, parasite, mitosome, hydrogenosome, evolution

  3. Structure and self-assembly of alkanethiols on III-V semiconductor (1 1 0) surfaces

    Energy Technology Data Exchange (ETDEWEB)

    Zerulla, D. [UCD Dublin, School of Physics, Science Centre North, Dublin 4 (Ireland)], E-mail: dominic.zerulla@ucd.ie; Chasse, T. [Universitaet Tuebingen, Institut fuer Physikalische und Theoretische Chemie, Auf der Morgenstelle 8, 72076 Tuebingen (Germany)

    2009-05-15

    We report on the self-assembly, binding, and structural properties of alkanethiol monolayers on III-V semiconductor (1 1 0) surfaces. In particular, the focus will be on medium size n-alkanethiols adsorbed on InP(1 1 0) and GaP(1 1 0) using soft X-ray photoelectron spectroscopy (SXPS), X-ray absorption near-edge structure (XANES) spectroscopy, scanning tunneling microscopy (STM) and electrochemical methods to reveal the binding and the inner structure of the systems. The results show that the sulfur from the thiol groups binds directly, under cleavage of its hydrogen atoms, to the indium atoms of the substrate while the hydrogen is bound to the phosphorous of the substrate. The angular (azimuthal and polar) resolved measurements reveal a substrate-dependent tilt of 34 deg. from normal for InP and 15 deg. for GaP. A unique feature observed on these systems is the complete alignment of the alkyl chains with respect to the azimuthal orientation. Further structural data confirm that this adsorbate system represents the case of a huge, single domain organic monolayer. We interprete this behaviour, which deviates strongly from the well known thiol films on gold, silver or copper, in terms of structural constraints and dangling-bond induced preorientation of the alkanethiol chains.

  4. Self-assembly Columnar Structure in Active Layer of Bulk Heterojunction Solar Cell

    Science.gov (United States)

    Pan, Cheng; Segui, Jennifer; Yu, Yingjie; Li, Hongfei; Akgun, Bulent; Satijia, Sushil. K.; Gersappe, Dilip; Nam, Chang-Yong; Rafailovich, Miriam

    2012-02-01

    Bulk Heterojunction (BHJ) polymer solar cells are an area of intense interest due to their flexibility and relatively low cost. However, due to the disordered inner structure in active layer, the power conversion efficiency of BHJ solar cell is relatively low. Our research provides the method to produce ordered self-assembly columnar structure within active layer of bulk heterojunction (BHJ) solar cell by introducing polystyrene (PS) into the active layer. The blend thin film of polystyrene, poly (3-hexylthiophene-2,5-diyl) (P3HT) and [6,6]-phenyl C61 butyric acid methyl ester (PCBM) at different ratio are spin coated on substrate and annealed in vacuum oven for certain time. Atomic force microscopy (AFM) images show uniform phase segregation on the surface of polymer blend thin film and highly ordered columnar structure is then proven by etching the film with ion sputtering. TEM cross-section technology is also used to investigate the column structure. Neutron reflectometry was taken to establish the confinement of PCBM at the interface of PS and P3HT. The different morphological structures formed via phase segregation will be correlated with the performance of the PEV cells to be fabricated at the BNL-CFN.

  5. Deterministic assembly processes govern bacterial community structure in the Fynbos, South Africa.

    Science.gov (United States)

    Moroenyane, I; Chimphango, S B M; Wang, J; Kim, H-K; Adams, Jonathan Miles

    2016-08-01

    The Mediterranean Fynbos vegetation of South Africa is well known for its high levels of diversity, endemism, and the existence of very distinct plant communities on different soil types. Studies have documented the broad taxonomic classification and diversity patterns of soil microbial diversity, but none has focused on the community assembly processes. We hypothesised that bacterial phylogenetic community structure in the Fynbos is highly governed by deterministic processes. We sampled soils in four Fynbos vegetation types and examined bacterial communities using Illumina HiSeq platform with the 16S rRNA gene marker. UniFrac analysis showed that the community clustered strongly by vegetation type, suggesting a history of evolutionary specialisation in relation to habitats or plant communities. The standardised beta mean nearest taxon distance (ses. β NTD) index showed no association with vegetation type. However, the overall phylogenetic signal indicates that distantly related OTUs do tend to co-occur. Both NTI (nearest taxon index) and ses. β NTD deviated significantly from null models, indicating that deterministic processes were important in the assembly of bacterial communities. Furthermore, ses. β NTD was significantly higher than that of null expectations, indicating that co-occurrence of related bacterial lineages (over-dispersion in phylogenetic beta diversity) is determined by the differences in environmental conditions among the sites, even though the co-occurrence pattern did not correlate with any measured environmental parameter, except for a weak correlation with soil texture. We suggest that in the Fynbos, there are frequent shifts of niches by bacterial lineages, which then become constrained and evolutionary conserved in their new environments. Overall, this study sheds light on the relative roles of both deterministic and neutral processes in governing bacterial communities in the Fynbos. It seems that deterministic processes play a major

  6. Deterministic assembly processes govern bacterial community structure in the Fynbos, South Africa.

    Science.gov (United States)

    Moroenyane, I; Chimphango, S B M; Wang, J; Kim, H-K; Adams, Jonathan Miles

    2016-08-01

    The Mediterranean Fynbos vegetation of South Africa is well known for its high levels of diversity, endemism, and the existence of very distinct plant communities on different soil types. Studies have documented the broad taxonomic classification and diversity patterns of soil microbial diversity, but none has focused on the community assembly processes. We hypothesised that bacterial phylogenetic community structure in the Fynbos is highly governed by deterministic processes. We sampled soils in four Fynbos vegetation types and examined bacterial communities using Illumina HiSeq platform with the 16S rRNA gene marker. UniFrac analysis showed that the community clustered strongly by vegetation type, suggesting a history of evolutionary specialisation in relation to habitats or plant communities. The standardised beta mean nearest taxon distance (ses. β NTD) index showed no association with vegetation type. However, the overall phylogenetic signal indicates that distantly related OTUs do tend to co-occur. Both NTI (nearest taxon index) and ses. β NTD deviated significantly from null models, indicating that deterministic processes were important in the assembly of bacterial communities. Furthermore, ses. β NTD was significantly higher than that of null expectations, indicating that co-occurrence of related bacterial lineages (over-dispersion in phylogenetic beta diversity) is determined by the differences in environmental conditions among the sites, even though the co-occurrence pattern did not correlate with any measured environmental parameter, except for a weak correlation with soil texture. We suggest that in the Fynbos, there are frequent shifts of niches by bacterial lineages, which then become constrained and evolutionary conserved in their new environments. Overall, this study sheds light on the relative roles of both deterministic and neutral processes in governing bacterial communities in the Fynbos. It seems that deterministic processes play a major

  7. Multiple quasi-monoenergetic electron beams from laser-wakefield acceleration with spatially structured laser pulse

    Energy Technology Data Exchange (ETDEWEB)

    Ma, Y.; Li, M. H.; Li, Y. F.; Wang, J. G.; Tao, M. Z.; Han, Y. J.; Zhao, J. R.; Huang, K.; Yan, W. C.; Ma, J. L.; Li, Y. T. [Beijing National Laboratory of Condensed Matter Physics, Institute of Physics, CAS, Beijing 100080 (China); Chen, L. M., E-mail: lmchen@iphy.ac.cn [Beijing National Laboratory of Condensed Matter Physics, Institute of Physics, CAS, Beijing 100080 (China); Department of Physics and Astronomy and IFSA Collaborative Innovation Center, Shanghai Jiao Tong University, Shanghai 200240 (China); Li, D. Z. [Institute of High Energy Physics, CAS, Beijing 100049 (China); Chen, Z. Y. [Institute of Fluid Physics, China Academy of Engineering Physics, Mianyang, Sichuan 621999 (China); Sheng, Z. M. [Department of Physics and Astronomy and IFSA Collaborative Innovation Center, Shanghai Jiao Tong University, Shanghai 200240 (China); Department of Physics, Scottish Universities Physics Alliance, University of Strathclyde, Glasgow G4 0NG (United Kingdom); Zhang, J. [Department of Physics and Astronomy and IFSA Collaborative Innovation Center, Shanghai Jiao Tong University, Shanghai 200240 (China)

    2015-08-15

    By adjusting the focus geometry of a spatially structured laser pulse, single, double, and treble quasi-monoenergetic electron beams were generated, respectively, in laser-wakefield acceleration. Single electron beam was produced as focusing the laser pulse to a single spot. While focusing the laser pulse to two spots that are approximately equal in energy and size and intense enough to form their own filaments, two electron beams were produced. Moreover, with a proper distance between those two focal spots, three electron beams emerged with a certain probability owing to the superposition of the diffractions of those two spots. The energy spectra of the multiple electron beams are quasi-monoenergetic, which are different from that of the large energy spread beams produced due to the longitudinal multiple-injection in the single bubble.

  8. Experimental study of DC vacuum breakdown and application to high-gradient accelerating structures for CLIC

    CERN Document Server

    Shipman, Nicholas; Jones, Roger

    2016-01-01

    The compact linear collider (CLIC) is a leading candidate for the next generation high energy linear collider. As any breakdown would result in a partial or full loss of luminosity for the pulse in which it occurs, obtaining a low breakdown rate in CLIC accelerating structures is a critical requirement for the successful operation of the proposed collider. This thesis presents investigations into the breakdown phenomenon primarily in the low breakdown rate regime of interest to CLIC, performed using the CERN DC spark systems between 2011 and 2014. The design, construction and commissioning of several new pieces of hardware, as well as the development of improved techniques to measuring the inter-electrode gap distance are detailed. These hardware improvements were fundamental in enabling the exciting new experiments mentioned below, which in turn have provided significant additional insight into the phenomenon of breakdown. Experiments were performed to measure fundamental parameters of individual breakdowns...

  9. Temporal evolution and electric potential structure of the auroral acceleration region from multispacecraft measurements

    OpenAIRE

    Forsyth, C.; Fazakerley, A.N.; Walsh, A. P.; Watt, Clare E. J.; Garza, K. J.; Owen, C. J.; Constantinescu, D.; I. Dandouras; Fornaçon, K.-H.; E. Lucek; G. T. Marklund; Sadeghi, S. S.; Khotyaintsev, Y.; Masson, A.; N. Doss

    2012-01-01

    Bright aurorae can be excited by the acceleration of electrons into the atmosphere in violation of ideal magnetohydrodynamics. Modelling studies predict that the accelerating electric potential consists of electric double layers at the boundaries of an acceleration region but observations suggest that particle acceleration occurs throughout this region. Using multi-spacecraft observations from Cluster we have examined two upward current regions on 14 December 2009. Our observations show that ...

  10. Thin current sheets in collisionless plasma: Equilibrium structure, plasma instabilities, and particle acceleration

    Energy Technology Data Exchange (ETDEWEB)

    Zelenyi, L. M.; Malova, H. V.; Artemyev, A. V.; Popov, V. Yu.; Petrukovich, A. A. [Russian Academy of Sciences, Space Research Institute (Russian Federation)

    2011-02-15

    The review is devoted to plasma structures with an extremely small transverse size, namely, thin current sheets that have been discovered and investigated by spacecraft observations in the Earth's magnetotail in the last few decades. The formation of current sheets is attributed to complicated dynamic processes occurring in a collisionless space plasma during geomagnetic perturbations and near the magnetic reconnection regions. The models that describe thin current structures in the Earth's magnetotail are reviewed. They are based on the assumption of the quasi-adiabatic ion dynamics in a relatively weak magnetic field of the magnetotail neutral sheet, where the ions can become unmagnetized. It is shown that the ion distribution can be represented as a function of the integrals of particle motion-the total energy and quasi-adiabatic invariant. Various modifications of the initial equilibrium are considered that are obtained with allowance for the currents of magnetized electrons, the contribution of oxygen ions, the asymmetry of plasma sources, and the effects related to the non-Maxwellian particle distributions. The theoretical results are compared with the observational data from the Cluster spacecraft mission. Various plasma instabilities developing in thin current sheets are investigated. The evolution of the tearing mode is analyzed, and the parameter range in which the mode can grow are determined. The paradox of complete stabilization of the tearing mode in current sheets with a nonzero normal magnetic field component is thereby resolved based on the quasi-adiabatic model. It is shown that, over a wide range of current sheet parameters and the propagation directions of large-scale unstable waves, various modified drift instabilities-kink and sausage modes-can develop in the system. Based on the concept of a turbulent electromagnetic field excited as a result of the development and saturation of unstable waves, a mechanism for charged particle

  11. Characterization of engineered actin binding proteins that control filament assembly and structure.

    Directory of Open Access Journals (Sweden)

    Crista M Brawley

    Full Text Available BACKGROUND: Eukaryotic cells strictly regulate the structure and assembly of their actin filament networks in response to various stimuli. The actin binding proteins that control filament assembly are therefore attractive targets for those who wish to reorganize actin filaments and reengineer the cytoskeleton. Unfortunately, the naturally occurring actin binding proteins include only a limited set of pointed-end cappers, or proteins that will block polymerization from the slow-growing end of actin filaments. Of the few that are known, most are part of large multimeric complexes that are challenging to manipulate. METHODOLOGY/PRINCIPAL FINDINGS: We describe here the use of phage display mutagenesis to generate of a new class of binding protein that can be targeted to the pointed-end of actin. These proteins, called synthetic antigen binders (sABs, are based on an antibody-like scaffold where sequence diversity is introduced into the binding loops using a novel "reduced genetic code" phage display library. We describe effective strategies to select and screen for sABs that ensure the generated sABs bind to the pointed-end surface of actin exclusively. CONCLUSIONS/SIGNIFICANCE: From our set of pointed-end binders, we identify three sABs with particularly useful properties to systematically probe actin dynamics: one protein that caps the pointed end, a second that crosslinks actin filaments, and a third that severs actin filaments and promotes disassembly.

  12. Atomically precise self-assembly of one-dimensional structures on silicon

    Science.gov (United States)

    Barke, I.; Rügheimer, T. K.; Zheng, Fan; Himpsel, F. J.

    2007-10-01

    This work has three main themes: (1) fabricate atomically precise nanostructures at surfaces, particularly nanowires consisting of atom chains; (2) explore the behavior of one-dimensional electrons in atomic chains; (3) find the fundamental limits of data storage using an atomic scale memory. Semiconductor surfaces lend themselves towards self-assembly, because the broken covalent bonds create elaborate reconstruction patterns to minimize the surface energy. An example is the large 7 × 7 unit cell on Si(1 1 1), which can be used as building block. On semiconductors, the surface electrons completely de-couple from the substrate, as long as their energy lies in the band gap. Angle-resolved photoemission reveals surprising features, such as a fractional band filling and a spin-splitting at a non-magnetic surface. An interesting by-product is a memory structure with self-assembled tracks that are five atom rows wide and store a bit by the presence or absence of a single silicon atom. This toy memory is used to test the fundamental limits of data storage and to see how storage on silicon compares to storage in DNA.

  13. Directed self-assembly of large scaffold-free multi-cellular honeycomb structures

    Energy Technology Data Exchange (ETDEWEB)

    Tejavibulya, Nalin; Youssef, Jacquelyn; Bao, Brian; Ferruccio, Toni-Marie; Morgan, Jeffrey R, E-mail: Jeffrey_Morgan@Brown.edu [Department of Molecular Pharmacology, Physiology and Biotechnology, Center for Biomedical Engineering, Brown University, G-B 393, Biomed Center, 171 Meeting St, Providence, RI 02912 (United States)

    2011-09-15

    A significant challenge to the field of biofabrication is the rapid construction of large three-dimensional (3D) living tissues and organs. Multi-cellular spheroids have been used as building blocks. In this paper, we create large multi-cellular honeycomb building blocks using directed self-assembly, whereby cell-to-cell adhesion, in the context of the shape and obstacles of a micro-mold, drives the formation of a 3D structure. Computer-aided design, rapid prototyping and replica molding were used to fabricate honeycomb-shaped micro-molds. Nonadhesive hydrogels cast from these micro-molds were equilibrated in the cell culture medium and seeded with two types of mammalian cells. The cells settled into the honeycomb recess were unable to attach to the nonadhesive hydrogel and so cell-to-cell adhesion drove the self-assembly of a large multi-cellular honeycomb within 24 h. Distinct morphological changes occurred to the honeycomb and its cells indicating the presence of significant cell-mediated tension. Unlike the spheroid, whose size is constrained by a critical diffusion distance needed to maintain cell viability, the overall size of the honeycomb is not limited. The rapid production of the honeycomb building unit, with its multiple rings of high-density cells and open lumen spaces, offers interesting new possibilities for biofabrication strategies.

  14. Ag nanoparticles formed by femtosecond pulse laser ablation in water: self-assembled fractal structures

    Energy Technology Data Exchange (ETDEWEB)

    Santillán, Jesica M. J. [CONICET La Plata-CIC, Centro de Investigaciones Ópticas (CIOp) (Argentina); Fernández van Raap, Marcela B., E-mail: raap@fisica.unlp.edu.ar; Mendoza Zélis, Pedro; Coral, Diego [CONICET, Instituto de Física La Plata (IFLP) (Argentina); Muraca, Diego [Universidade Estadual de Campinas, Instituto de Física “Gleb Wataghin” (IFGW) (Brazil); Schinca, Daniel C.; Scaffardi, Lucía B., E-mail: lucias@ciop.unlp.edu.ar [CONICET La Plata-CIC, Centro de Investigaciones Ópticas (CIOp) (Argentina)

    2015-02-15

    We report for the first time on the formation of self-assembled fractals of spherical Ag nanoparticles (Nps) fabricated by femtosecond pulse laser ablation of a solid silver target in water. Fractal structures grew both in two and three Euclidean dimensions (d). Ramified-fractal assemblies of 2 nm height and 5–14 μm large, decorated with Ag Nps of 3 nm size, were obtained in a 2d geometry when highly diluted drops of colloidal suspension were dried at a fast heating rate over a mica substrate. When less-diluted drops were dried at slow heating rate, isolated single Nps or rosette-like structures were formed. Fractal aggregates about 31 nm size in 3d geometry were observed in the as-prepared colloidal suspension. Electron diffraction and optical extinction spectroscopy (OES) analyses performed on the samples confirmed the presence of Ag and Ag{sub 2}O. The analysis of the optical extinction spectrum, using the electrostatic approximation of Mie theory for small spheres, showed the existence of Ag bare core, Ag–Ag{sub 2}O and air–Ag core–shell Nps, Ag–Ag{sub 2}O being the most frequent type [69 % relative abundance (r.a.)]. Core-size and shell-thickness distribution was derived from OES. In situ scattering measurements of the Ag colloidal suspension, carried out by small-angle X-ray scattering, indicate a mass fractal composed of packaged 〈D{sub SAXS}〉 = (5 ± 1) nm particles and fractal dimension d{sub f} = 2.5. Ex situ atomic force microscopy imaging displayed well-ramified structures, which, analyzed with box-counting method, yield a fractal dimension d{sub f} = 1.67. The growing behavior of these 2d and 3d self-assembled fractals is consistent with the diffusion-limited aggregation model.

  15. Structure-property relationships for self-assembled zinc chlorin light-harvesting dye aggregates.

    Science.gov (United States)

    Huber, Valerie; Sengupta, Sanchita; Würthner, Frank

    2008-01-01

    A series of zinc 3(1)-hydroxymethyl chlorins 10 a-e and zinc 3(1)-hydroxyethyl chlorins 17 with varied structural features were synthesized by modifying naturally occurring chlorophyll a. Solvent-, temperature-, and concentration-dependent UV/Vis and CD spectroscopic methods as well as microscopic investigations were performed to explore the importance of particular functional groups and steric effects on the self-assembly behavior of these zinc chlorins. Semisynthetic zinc chlorins 10 a-e possess the three functional units relevant for self-assembly found in their natural bacteriochlorophyll (BChl) counterparts, namely, the 3(1)-OH group, a central metal ion, and the 13(1) C==O moiety along the Qy axis, and they contain various 17(2)-substituents. Depending on whether the zinc chlorins have 17(2)-hydrophobic or hydrophilic side chains, they self-assemble in nonpolar organic solvents or in aqueous media, respectively. Zinc chlorins possessing at least two long side chains provide soluble self-aggregates that are stable in solution for a prolonged time, thus facilitating elucidation of their properties by optical spectroscopy. The morphology of the zinc chlorin aggregates was elucidated by atomic force microscopy (AFM) studies, revealing well-defined nanoscale rod structures for zinc chlorin 10 b with a height of about 6 nm. It is worth noting that this size is in good accordance with a tubular arrangement of the dyes similar to that observed in their natural BChl counterparts in the light-harvesting chlorosomes of green bacteria. Furthermore, for the epimeric 3(1)-hydroxyethyl zinc chlorins 17 with hydrophobic side chains, the influence of the chirality center at the 3(1)-position on the aggregation behavior was studied in detail by UV/Vis and CD spectroscopy. Unlike zinc chlorins 10, the 3(1)-hydroxyethyl zinc chlorins 17 formed only small oligomers and not higher rod aggregate structures, which can be attributed to the steric effect imposed by the additional

  16. Template Syntheses, Crystal Structures and Supramolecular Assembly of Hexaaza Macrocyclic Copper(II) Complexes

    International Nuclear Information System (INIS)

    Two new hexaaza macrocyclic copper(II) complexes were prepared by a template method and structurally characterized. In the solid state, they were self-assembled by intermolecular interactions to form the corresponding supramolecules 1 and 2, respectively. In the structure of 1, the copper(II) macrocycles are bridged by a tp ligand to form a macrocyclic copper(II) dimer. The dimer extends its structure by intermolecular forces such as hydrogen bonds and C-H···π interactions, resulting in the formation of a double stranded 1D supramolecule. In 2, the basic structure is a monomeric copper(II) macrocycle with deprotonated imidazole pendants. An undulated 1D hydrogen bonded array is achieved through hydrogen bonds between imidazole pendants and secondary amines, where the imidazole pendants act as a hydrogen bond acceptor. The 1D hydrogen bonded supramolecular chain is supported by C-H···π interactions between the methyl groups of acetonitrile ligands and imidazole pendants of the copper(II) macrocycles. In both complexes, the introduction of imidazoles to the macrocycle as a pendant plays an important role for the formation of supramolecules, where they act as intermolecular hydrogen bond donors and/or acceptors, C-H···π and π-π interactions

  17. Animal Hairs as Water-stimulated Shape Memory Materials: Mechanism and Structural Networks in Molecular Assemblies

    Science.gov (United States)

    Xiao, Xueliang; Hu, Jinlian

    2016-05-01

    Animal hairs consisting of α-keratin biopolymers existing broadly in nature may be responsive to water for recovery to the innate shape from their fixed deformation, thus possess smart behavior, namely shape memory effect (SME). In this article, three typical animal hair fibers were first time investigated for their water-stimulated SME, and therefrom to identify the corresponding net-points and switches in their molecular and morphological structures. Experimentally, the SME manifested a good stability of high shape fixation ratio and reasonable recovery rate after many cycles of deformation programming under water stimulation. The effects of hydration on hair lateral size, recovery kinetics, dynamic mechanical behaviors and structural components (crystal, disulfide and hydrogen bonds) were then systematically studied. SME mechanisms were explored based on the variations of structural components in molecular assemblies of such smart fibers. A hybrid structural network model with single-switch and twin-net-points was thereafter proposed to interpret the water-stimulated shape memory mechanism of animal hairs. This original work is expected to provide inspiration for exploring other natural materials to reveal their smart functions and natural laws in animals including human as well as making more remarkable synthetic smart materials.

  18. The absence of tertiary interactions in a self-assembled DNA crystal structure.

    Science.gov (United States)

    Nguyen, Nam; Birktoft, Jens J; Sha, Ruojie; Wang, Tong; Zheng, Jianping; Constantinou, Pamela E; Ginell, Stephan L; Chen, Yi; Mao, Chengde; Seeman, Nadrian C

    2012-04-01

    DNA is a highly effective molecule for controlling nanometer-scale structure. The convenience of using DNA lies in the programmability of Watson-Crick base-paired secondary interactions, useful both to design branched molecular motifs and to connect them through sticky-ended cohesion. Recently, the tensegrity triangle motif has been used to self-assemble three-dimensional crystals whose structures have been determined; sticky ends were reported to be the only intermolecular cohesive elements in those crystals. A recent communication in this journal suggested that tertiary interactions between phosphates and cytosine N(4) groups are responsible for intermolecular cohesion in these crystals, in addition to the secondary and covalent interactions programmed into the motif. To resolve this issue, we report experiments challenging this contention. Gel electrophoresis demonstrates that the tensegrity triangle exists in conditions where cytosine-PO(4) tertiary interactions seem ineffective. Furthermore, we have crystallized a tensegrity triangle using a junction lacking the cytosine suggested for involvement in tertiary interactions. The unit cell is isomorphous with that of a tensegrity triangle crystal reported earlier. This structure has been solved by molecular replacement and refined. The data presented here leave no doubt that the tensegrity triangle crystal structures reported earlier depend only on base pairing and covalent interactions for their formation. PMID:22434713

  19. ISWI regulates higher-order chromatin structure and histone H1 assembly in vivo.

    Directory of Open Access Journals (Sweden)

    Davide F V Corona

    2007-09-01

    Full Text Available Imitation SWI (ISWI and other ATP-dependent chromatin-remodeling factors play key roles in transcription and other processes by altering the structure and positioning of nucleosomes. Recent studies have also implicated ISWI in the regulation of higher-order chromatin structure, but its role in this process remains poorly understood. To clarify the role of ISWI in vivo, we examined defects in chromosome structure and gene expression resulting from the loss of Iswi function in Drosophila. Consistent with a broad role in transcriptional regulation, the expression of a large number of genes is altered in Iswi mutant larvae. The expression of a dominant-negative form of ISWI leads to dramatic alterations in higher-order chromatin structure, including the apparent decondensation of both mitotic and polytene chromosomes. The loss of ISWI function does not cause obvious defects in nucleosome assembly, but results in a significant reduction in the level of histone H1 associated with chromatin in vivo. These findings suggest that ISWI plays a global role in chromatin compaction in vivo by promoting the association of the linker histone H1 with chromatin.

  20. Structural characteristics that stabilize or destabilize different assembly levels of phycocyanin by urea.

    Science.gov (United States)

    Marx, Ailie; Adir, Noam

    2014-07-01

    Phycocyanin is one of the two phycobiliproteins always found in the Phycobilisome antenna complex. It is always situated at the ends of the peripheral rods, adjacent to the core cylinders composed of allophycocyanin. The basic phycocyanin monomer is an (αβ) dimer of globin-like subunits with three covalently linked phycocyanobilin cofactors. Monomers assemble further into trimers, hexamers, and rods which include non-pigmented linker proteins. Upon isolation in low ionic strength solution, rods quickly disintegrate into phycocyanin trimers, which lose contacts with other phycobiliproteins and with the linker proteins. The trimers, however, are quite stable and only the presence of high concentrations of chaotropic agents (such as urea), very acidic solutions, or elevated temperatures induces monomerization, followed by separation between the subunits. We have recently determined the crystal structures of phycocyanin from the thremophilic cyanobacterium Thermosynechococcus vulcanus in the presence of 2 or 4 M urea, and shown that 4 M urea monomerizes the phycocyanin trimers. In this paper, we will describe the phycocyanin structures in 2 and 4 M urea more completely. By mapping out the urea positions, we describe the structural elements within the trimeric interaction interface that may be interrupted by the presence of 4 M urea. In addition, we also identify what are the structural characteristics that prevent 4 M urea from inducing subunit dissociation. PMID:24687534

  1. Animal Hairs as Water-stimulated Shape Memory Materials: Mechanism and Structural Networks in Molecular Assemblies.

    Science.gov (United States)

    Xiao, Xueliang; Hu, Jinlian

    2016-01-01

    Animal hairs consisting of α-keratin biopolymers existing broadly in nature may be responsive to water for recovery to the innate shape from their fixed deformation, thus possess smart behavior, namely shape memory effect (SME). In this article, three typical animal hair fibers were first time investigated for their water-stimulated SME, and therefrom to identify the corresponding net-points and switches in their molecular and morphological structures. Experimentally, the SME manifested a good stability of high shape fixation ratio and reasonable recovery rate after many cycles of deformation programming under water stimulation. The effects of hydration on hair lateral size, recovery kinetics, dynamic mechanical behaviors and structural components (crystal, disulfide and hydrogen bonds) were then systematically studied. SME mechanisms were explored based on the variations of structural components in molecular assemblies of such smart fibers. A hybrid structural network model with single-switch and twin-net-points was thereafter proposed to interpret the water-stimulated shape memory mechanism of animal hairs. This original work is expected to provide inspiration for exploring other natural materials to reveal their smart functions and natural laws in animals including human as well as making more remarkable synthetic smart materials. PMID:27230823

  2. Evaluation of seismic acceleration responses of base-isolated and nonisolated structures varying with mechanical characteristics of foundations

    Energy Technology Data Exchange (ETDEWEB)

    You, Bong; Lee, Jae Han; Ku, Kyung Hoi [Korea Atomic Energy Research Institute, Daeduk (Korea, Republic of)

    1996-05-01

    The evaluation of acceleration responses of isolated and nonisolated structures according to mechanical features of soils is important. The kinds of soils taken in analyses are soft, medium and hard rocks, and a fixed base condition is also taken for the comparison. The horizontal isolation frequency used is 0.5 Hz. The time history analyses of reference power plant using 1940 El Centro horizontal (NS) and vertical earthquakes are performed to investigate the seismic responses varying with soil characteristics for isolated and nonisolated structures. The horizontal acceleration responses of the horizontal isolated-structures show almost similar values irrespective of the various kinds of soils and are largely decreased in the frequency ranges above 2 hz. The vertical natural frequency, 21Hz of high damping rubber bearing does not affect the vertical acceleration responses in case of soft rock, but largely affects in hard rock condition. For nonisolated structures, the acceleration responses are decreased in both horizontal and vertical directions by taking into account the soils in the analysis model. The extent of reduction of acceleration responses is larger in vertical direction than in horizontal one, as the stiffness of rock becomes softer. 8 tabs., 21 figs., 8 refs. (Author) .new.

  3. Enantiomeric Excess-Tuned 2D Structural Transition: From Heterochiral to Homochiral Supramolecular Assemblies.

    Science.gov (United States)

    Li, Shu-Ying; Chen, Ting; Wang, Lin; Sun, Bing; Wang, Dong; Wan, Li-Jun

    2016-07-12

    Spontaneous resolution of enantiomers is an intriguing and important phenomenon in surface chirality studies. Herein, we report on a two-dimensional (2D) structural transition from the heterochiral to homochiral assembly tuned by changing the enantiomeric excess (ee) of enantiomers in the solution phase. Enantiomers cocrystallize as racemates on the surface when the ee of the R-enantiomer (or S-enantiomer) remains below a critical value, whereas chiral segregation is achieved, and globally homochiral surfaces composed of exclusively one enantiomer are obtained as the critical ee is exceeded. The heterochiral-homochiral transition is ascribed to the formation of energetically unfavored homochiral molecular dimers under the control of the majority-rules principle at high ee values. Such results present an intriguing phenomenon in chiral ordering at surfaces, promising a new enlightenment toward understanding chiral resolution and the evolution of chirality. PMID:27287273

  4. Structural and Shielding Safety of a Transport Package for Radioisotope Sealed Source Assembly

    International Nuclear Information System (INIS)

    As some kinds of radioisotope (RI) sealed source are produced by HANARO research reactor, a demand of RI transport package is increasing gradually. Foreign countries, which produce the various RIs, have the intrinsic model of the RI transport package. It is necessary to develop a RI and its transport package simultaneously. It is difficult to design a shielding part for this transport package because the passage for this source assembly should be provided from the center of shielding part to the outside of the package. In order to endure the accident conditions such as a 9 m drop and puncture, this transport package consists of the guide tubes, a gamma shield and a shock absorber. This paper describe that a shielding and structural safety of RI sealed source transport package are evaluated under the accident conditions

  5. Hierarchical structural control of visual properties in self-assembled photonic-plasmonic pigments

    CERN Document Server

    Koay, Natalie; Kay, Theresa M; Nerger, Bryan A; Miles-Rossouw, Malaika; Shirman, Tanya; Vu, Thy L; England, Grant; Phillips, Katherine R; Utech, Stefanie; Vogel, Nicolas; Kolle, Mathias; Aizenberg, Joanna

    2014-01-01

    We present a simple one-pot co-assembly method for the synthesis of hierarchically structured pigment particles consisting of silica inverse-opal bricks that are doped with plasmonic absorbers. We study the interplay between the plasmonic and photonic resonances and their effect on the visual appearance of macroscopic collections of photonic bricks that are distributed in randomized orientations. Manipulating the pore geometry tunes the wavelength- and angle-dependence of the scattering profile, which can be engineered to produce angle-dependent Bragg resonances that can either enhance or contrast with the color produced by the plasmonic absorber. By controlling the overall dimensions of the photonic bricks and their aspect ratios, their preferential alignment can either be encouraged or suppressed. This causes the Bragg resonance to appear either as uniform color travel in the former case or as sparse iridescent sparkle in the later case. By manipulating the surface chemistry of these photonic bricks, which ...

  6. Structural and electronic characterization of self-assembled molecular nanoarchitectures by X-ray photoelectron spectroscopy.

    Science.gov (United States)

    Gulino, Antonino

    2013-02-01

    Molecular monolayers and similar nanoarchitectures are indicative of the promising future of nanotechnology. Therefore, many scientists recently devoted their efforts to the synthesis, characterization, and properties of mono- and multilayer-based systems. In this context, X-ray photoelectron spectroscopy is an important technique for the in-depth chemical and structural characterization of nanoscopic systems. In fact, it is a surface technique suitable for probing thicknesses of the same order of the photoelectron inelastic mean free paths (a few tens of ångströms) and allows one to immediately obtain qualitative and quantitative data, film thickness, surface coverage, molecule footprint, oxidation states, and presence of functional groups. Nevertheless, other techniques are important in obtaining a complete spectroscopic characterization of the investigated systems. Therefore, in the present review we report on X-ray photoelectron spectroscopy of self-assembled molecular mono- and multilayer materials including some examples on which other characterization techniques produced important results. PMID:23014858

  7. Gold nanoparticles covalently assembled onto vesicle structures as possible biosensing platform

    Science.gov (United States)

    Barroso, M Fátima; Luna, M Alejandra; Tabares, Juan S Flores; Delerue-Matos, Cristina; Correa, N Mariano

    2016-01-01

    Summary In this contribution a strategy is shown to covalently immobilize gold nanoparticles (AuNPs) onto vesicle bilayers with the aim of using this nanomaterial as platform for the future design of immunosensors. A novel methodology for the self-assembly of AuNPs onto large unilamellar vesicle structures is described. The vesicles were formed with 1,2-dioleoyl-sn-glycero-3-phosphocholine (DOPC) and 1-undecanethiol (SH). After, the AuNPs photochemically synthesized in pure glycerol were mixed and anchored onto SH–DOPC vesicles. The data provided by voltammetry, spectrometry and microscopy techniques indicated that the AuNPs were successfully covalently anchored onto the vesicle bilayer and decorated vesicles exhibit a spherical shape with a size of 190 ± 10 nm. The developed procedure is easy, rapid and reproducible to start designing a possible immunosensor by using environmentally friendly procedures. PMID:27335755

  8. The structure and dynamics of self-assembling colloidal monolayers in oscillating magnetic fields

    CERN Document Server

    Koser, Alison E; Arratia, Paulo E

    2013-01-01

    Many fascinating phenomena such as large-scale collective flows, enhanced fluid mixing and pattern formation have been observed in so-called active fluids, which are composed of particles that can absorb energy and dissipate it into the fluid medium. For active particles immersed in liquids, fluid-mediated viscous stresses can play an important role on the emergence of collective behavior. Here, we experimentally investigate their role in the dynamics of self-assembling magnetically-driven colloidal particles which can rapidly form organized hexagonal structures. We find that viscous stresses reduce hexagonal ordering, generate smaller clusters, and significantly decrease the rate of cluster formation, all while holding the system at constant number density. Furthermore, we show that time and length scales of cluster formation depend on the Mason number (Mn), or ratio of viscous to magnetic forces, scaling as t / Mn and L / Mn^(1/2). Our results suggest that viscous stresses hinder collective behavior in a se...

  9. The structure and assembly of surface layer proteins : a combined approach of in silico and experimental methods

    International Nuclear Information System (INIS)

    Self-assembly of matter is one of nature's most sophisticated strategies to organize molecules on a large scale and to create order from disorder. Surface (S-)layer proteins self-assemble in a highly reproducible and robust fashion in order to form crystalline layers that completely cover and protect prokaryotic cells. Long conserved during evolution, S-layers constitute a unique model system to study the molecular mechanisms of functional self-assembly, while additionally, they provide a basic matrix for the specific construction of ordered nanostructures. Due to their intrinsic capabilities to self-assemble into two-dimensional crystals, the elucidation of the three-dimensional structure of single S-layer proteins demands an approach beyond conventional structure determination methods. In this work, computer simulations were combined with experimental techniques in order to study the structure and intra- and intermolecular potentials guiding the proteins to self-assemble into lattices with different symmetries. Molecular dynamics, Monte Carlo methods, small-angle X-ray scattering involving a new theoretical description, and AFM-based single-molecule force spectroscopy yield new insights into the three-dimensional structure of S-layer proteins, the location, type and distribution of amino acids in S-layer lattices, the molecular mechanisms behind the self-assembly process, the mechanical stability and adaptive structural conformations that S-layer proteins are able to establish. In silico studies - embedded in an adequate experimental and theoretical scaffold - offer the possibility to calculate structural and thermodynamic features of proteins, while this work demonstrates the growing impact of such theoretical techniques in the fascinating field of biophysics at the nano-scale. (author)

  10. 载人航天某装置人机交互式结构优化设计%Structural optimization using human-computer interaction for an aerospace assembly

    Institute of Scientific and Technical Information of China (English)

    刘磊; 刘洪英; 马爱军; 胡清华; 冯雪梅; 石蒙; 董睿; 赵亚雄

    2016-01-01

    To solve the problem of the structural optimization of a complicated structure under dynamic response constraints, a human-computer interaction method is proposed to take the advantages of human and computer in the structural optimization, and it is used in the structural optimization of an aerospace assembly. The assembly, after the structural optimization, exhibits remarkable performance improvement in that the first integral vibration frequency increases 41.1% and the maximal the frequency response acceleration of cared points drops 24.3% under the sinusoidal vibration test load conditions while the mass remains essentially unchanged. The result satisfies the requirement of the optimal design and proves the effectiveness and feasibility of the method.%为了解决复杂结构在动力学响应约束下优化的难题,综合人工以及计算机在复杂结构优化中的优点,提出一种人机交互式优化方法用于载人航天某复杂装置的优化设计。经过结构优化后的装置,在质量保持基本不变的情况下一阶振动频率提升41.1%,正弦试验条件下关心节点的最大加速度响应值减小24.3%,优化效果明显,满足优化设计要求,验证了该优化设计方法的可行、有效。

  11. Assembly of Complex Nano-Structure from Single Atoms —Chemical Identification, Manipulation and Assembly by AFM—

    Science.gov (United States)

    Morita, Seizo; Sugimoto, Yoshiaki; Ooyabu, Noriaki; Custance, Óscar; Abe, Masayuki; Pou, Pablo; Jelinek, Pavel; Pérez, Rubén

    An atomic force microscope (AFM) under noncontact and nearcontact regions operated at room-temperature (RT) in ultrahigh vacuum, is used as a tool for topography-based atomic discrimination and atomic-interchange manipulations of two intermixed atomic species on semiconductor surfaces. Noncontact AFM topography based site-specific force curves provide the chemical covalent bonding forces between the tip apex and the atoms at the surface. Here, we introduced an example related to topography-based atomic discrimination using selected Sn and Si adatoms in Sn/Si(111)-(√3 ×√3 ) surface. Recently, under nearcontact region, we found a lateral atom-interchange manipulation phenomenon at RT in Sn/Ge(111)-c(2×8) intermixed sample. This phenomenon can interchange an embedded Sn atom with a neighbor Ge atom at RT. Using the vector scan method under nearcontact region, we constructed “Atom Inlay”, that is, atom letters “Sn” consisted of 19 Sn atoms embedded in Ge(111)-c(2×8) substrate. Using these methods, now we can assemble compound semiconductor nanostructures atom-by-atom.

  12. Bionic optimization in structural design stochastically based methods to improve the performance of parts and assemblies

    CERN Document Server

    Gekeler, Simon

    2016-01-01

    The book provides suggestions on how to start using bionic optimization methods, including pseudo-code examples of each of the important approaches and outlines of how to improve them. The most efficient methods for accelerating the studies are discussed. These include the selection of size and generations of a study’s parameters, modification of these driving parameters, switching to gradient methods when approaching local maxima, and the use of parallel working hardware. Bionic Optimization means finding the best solution to a problem using methods found in nature. As Evolutionary Strategies and Particle Swarm Optimization seem to be the most important methods for structural optimization, we primarily focus on them. Other methods such as neural nets or ant colonies are more suited to control or process studies, so their basic ideas are outlined in order to motivate readers to start using them. A set of sample applications shows how Bionic Optimization works in practice. From academic studies on simple fra...

  13. Structure and assembly of group B streptococcus pilus 2b backbone protein.

    Science.gov (United States)

    Cozzi, Roberta; Malito, Enrico; Lazzarin, Maddalena; Nuccitelli, Annalisa; Castagnetti, Andrea; Bottomley, Matthew J; Margarit, Immaculada; Maione, Domenico; Rinaudo, C Daniela

    2015-01-01

    Group B Streptococcus (GBS) is a major cause of invasive disease in infants. Like other Gram-positive bacteria, GBS uses a sortase C-catalyzed transpeptidation mechanism to generate cell surface pili from backbone and ancillary pilin precursor substrates. The three pilus types identified in GBS contain structural subunits that are highly immunogenic and are promising candidates for the development of a broadly-protective vaccine. Here we report the X-ray crystal structure of the backbone protein of pilus 2b (BP-2b) at 1.06Å resolution. The structure reveals a classical IgG-like fold typical of the pilin subunits of other Gram-positive bacteria. The crystallized portion of the protein (residues 185-468) encompasses domains D2 and D3 that together confer high stability to the protein due to the presence of an internal isopeptide bond within each domain. The D2+D3 region, lacking the N-terminal D1 domain, was as potent as the entire protein in conferring protection against GBS challenge in a well-established mouse model. By site-directed mutagenesis and complementation studies in GBS knock-out strains we identified the residues and motives essential for assembly of the BP-2b monomers into high-molecular weight complexes, thus providing new insights into pilus 2b polymerization.

  14. Structure and assembly of group B streptococcus pilus 2b backbone protein.

    Directory of Open Access Journals (Sweden)

    Roberta Cozzi

    Full Text Available Group B Streptococcus (GBS is a major cause of invasive disease in infants. Like other Gram-positive bacteria, GBS uses a sortase C-catalyzed transpeptidation mechanism to generate cell surface pili from backbone and ancillary pilin precursor substrates. The three pilus types identified in GBS contain structural subunits that are highly immunogenic and are promising candidates for the development of a broadly-protective vaccine. Here we report the X-ray crystal structure of the backbone protein of pilus 2b (BP-2b at 1.06Å resolution. The structure reveals a classical IgG-like fold typical of the pilin subunits of other Gram-positive bacteria. The crystallized portion of the protein (residues 185-468 encompasses domains D2 and D3 that together confer high stability to the protein due to the presence of an internal isopeptide bond within each domain. The D2+D3 region, lacking the N-terminal D1 domain, was as potent as the entire protein in conferring protection against GBS challenge in a well-established mouse model. By site-directed mutagenesis and complementation studies in GBS knock-out strains we identified the residues and motives essential for assembly of the BP-2b monomers into high-molecular weight complexes, thus providing new insights into pilus 2b polymerization.

  15. Crystal Structure of the Caenorhabditis elegans Apoptosome Reveals an Octameric Assembly of CED-4

    Energy Technology Data Exchange (ETDEWEB)

    Qi, S.; Li, H.; Pang, Y.; Hu, Q., Liu, Q., Li, H.; Zhou, Y.; He, T.; Liang, Q.; Liu, Y.; Yuan, X.; Luo, G.; Wang, J.; Yan, N.; Shi, Y.

    2010-04-30

    The CED-4 homo-oligomer or apoptosome is required for initiation of programmed cell death in Caenorhabditis elegans by facilitating autocatalytic activation of the CED-3 caspase zymogen. How the CED-4 apoptosome assembles and activates CED-3 remains enigmatic. Here we report the crystal structure of the complete CED-4 apoptosome and show that it consists of eight CED-4 molecules, organized as a tetramer of an asymmetric dimer via a previously unreported interface among AAA{sup +} ATPases. These eight CED-4 molecules form a funnel-shaped structure. The mature CED-3 protease is monomeric in solution and forms an active holoenzyme with the CED-4 apoptosome, within which the protease activity of CED-3 is markedly stimulated. Unexpectedly, the octameric CED-4 apoptosome appears to bind only two, not eight, molecules of mature CED-3. The structure of the CED-4 apoptosome reveals shared principles for the NB-ARC family of AAA{sup +} ATPases and suggests a mechanism for the activation of CED-3.

  16. Highly ordered surface structure of large-scale porphyrin aggregates assembled from protonated TPP and water

    Science.gov (United States)

    Udal'tsov, Alexander V.; Bolshakova, Anastasia V.; Vos, Johannes G.

    2014-05-01

    Large-scale aggregates assembled from protonated meso-tetraphenylporphine (TPP) dimers and water have been investigated by IR and resonance Raman spectroscopy and also by scanning electron microscopy (SEM). It was found that the properties of water confined in the aggregates depend on the physical state of the support. When the aggregates were deposited on a solid CaF2 plate, they showed properties consistent with a quasi-crystalline structure. But when the aggregates were dispersed in oil, their IR characteristics were different; the vibration bands of the confined water were like those of water in liquid state. A doublet at about 1000 cm-1, components of which have been attributed to specific vibrations of H3O+ and H2O bound in the structure of water-porphyrin dimeric complex, was found in IR and resonance Raman spectra (λex = 441.6 nm) of protonated TPP aggregates. This doublet indicates the hydrogen ion involving in the vibrational system of water-porphyrin dimeric complex with hydrogen bonding by similar way as in so-called Zundel cation. The resonance Raman spectrum shows evidence for proton sharing between protonated water dimer and N groups of the pyrrole rings. SEM results indicate that the large-scale aggregates of the protonated porphyrin possess highly ordered structure, are only observed when using extremely pure water.

  17. Molecular Processes Underlying the Structure and Assembly of Thin Films and Nanoparticles at Complex interfaces

    Energy Technology Data Exchange (ETDEWEB)

    Richmond, Geraldine [Univ. of Oregon, Eugene, OR (United States)

    2016-06-03

    differences in how water behaves at hydrophobic self-assembled monolayer (SAMS)/water interfaces relative to the organic liquid/water interfaces. Several monolayer films have been examined in these studies using a combination of vibrational sum frequency spectroscopy (VSFS), contact angle measurements and AFM. At the hydrocarbon monolayer/water interface we find that water has a weak bonding interaction with the monolayer film that results in an orientation of water at the terminus of these hydrocarbon chains. The water-film interaction is still present for fluorinated films but it is found to be considerably weaker. Hydration and Surfactant Adsorption at Salt/Water Interfaces This set of studies has examined the molecular characteristics of the CaF2/water interface using VSFS. Our first studies detailed the structure and orientation of water molecules adsorbed at this mineral surfaces including studies of the surface in the presence of aqueous solutions of salts. These studies have been followed by a series of static and time-resolved studies of the adsorption of carboxylic acid containing organics at this surface, specifically carboxylic acid surfactants and acetic acid. In the latter we have developed a new method for time resolved studies that involve sequential wavelength tuning and automated control of spatial beam overlap at the target can probe amplitude changes of sum-frequency resonances in widely spaced infrared regions. This offers great advantages for the study of the synchronism of molecular processes at interfaces. This approach is particularly suitable to investigate the synchronization of interfacial processes such as surfactant adsorption at charged mineral surfaces. Macromolecular Assembly at Liquid/Liquid Interfaces Macromolecular assembly at the interface between water and a hydrophobic surface underlies some of the most important biological and environmental processes on the planet. Our work has examined polymer adsorption and assembly of

  18. A Discussion on Structural Poverty in the Western Ethnic Region during the Period of Accelerated Transformation

    Institute of Scientific and Technical Information of China (English)

    Jia Xiaofeng

    2015-01-01

    During the period of accelerated so-cial transformation,except for those factors such as geographical environment,natural disaster and per-sonal reasons, the key factor for poverty in the western ethnic region of China is structural. Moreo-ver,this kind of structural poverty normally is inte-grated with other factors,such as natural disasters, culture, etc. This makes the poverty issue in the western ethnic region more prominent than in other areas. Structural poverty creates not only a butterfly effect on poverty, but also creates serious social harm. The biggest harm is that it is difficult for the group that is poor to integrate into society, and to find relief from their poverty. On the other hand, structural poverty increases misunderstanding and distrust between the social classes and groups. Firstly, the poverty during the period of social transformation is mainly reflected in the gap be-tween the east and west, the gap between urban and rural areas,the gap between industries,and the gap among the different groups. During the period of transformation,the gap between the western and eastern areas became bigger and bigger, and the western area became a symbol of poverty. Second-ly,with regard to the gap between urban and rural areas, the gap became even larger. Thirdly, the negative social psychological problem caused by poverty led to social breakdown. Because the west-ern ethnic minority region is in a poor and back-ward situation,the minority people’s sense of pride has been gradually replaced with a sense of inferi-ority. People feel that their development is restrict-ed, and they have become a marginalized social group. The economic gaps between the western ethnic minority region and the eastern region, as well as the internal gaps within the western ethnic minority region, have caused misunderstandings a-mong the different regions and within the same eth-nic group. The entire society’s anxiety level with re-gard to the wealth is increasing. The rich

  19. Traversal Caches: A Framework for FPGA Acceleration of Pointer Data Structures

    Directory of Open Access Journals (Sweden)

    James Coole

    2010-01-01

    Full Text Available Field-programmable gate arrays (FPGAs and other reconfigurable computing (RC devices have been widely shown to have numerous advantages including order of magnitude performance and power improvements compared to microprocessors for some applications. Unfortunately, FPGA usage has largely been limited to applications exhibiting sequential memory access patterns, thereby prohibiting acceleration of important applications with irregular patterns (e.g., pointer-based data structures. In this paper, we present a design pattern for RC application development that serializes irregular data structure traversals online into a traversal cache, which allows the corresponding data to be efficiently streamed to the FPGA. The paper presents a generalized framework that benefits applications with repeated traversals, which we show can achieve between 7x and 29x speedup over pointer-based software. For applications without strictly repeated traversals, we present application-specialized extensions that benefit applications with highly similar traversals by exploiting similarity to improve memory bandwidth and execute multiple traversals in parallel. We show that these extensions can achieve a speedup between 11x and 70x on a Virtex4 LX100 for Barnes-Hut n-body simulation.

  20. Is Structured Observation a Valid Technique to Measure Handwashing Behavior? Use of Acceleration Sensors Embedded in Soap to Assess Reactivity to Structured Observation

    OpenAIRE

    Ram, Pavani K.; Halder, Amal K.; Stewart P Granger; Jones, Therese; Hall, Peter; Hitchcock, David; Wright, Richard; Nygren, Benjamin; Islam, M. Sirajul; Molyneaux, John W.; Luby, Stephen P.

    2010-01-01

    Structured observation is often used to evaluate handwashing behavior. We assessed reactivity to structured observation in rural Bangladesh by distributing soap containing acceleration sensors and performing structured observation 4 days later. Sensors recorded the number of times soap was moved. In 45 participating households, the median number of sensor soap movements during the 5-hour time block on pre-observation days was 3.7 (range 0.3–10.6). During the structured observation, the median...

  1. Self-Assembled Multilayer Structure and Enhanced Thermochromic Performance of Spinodally Decomposed TiO2-VO2 Thin Film.

    Science.gov (United States)

    Sun, Guangyao; Zhou, Huaijuan; Cao, Xun; Li, Rong; Tazawa, Masato; Okada, Masahisa; Jin, Ping

    2016-03-23

    Composite films of VO2-TiO2 were deposited on sapphire (11-20) substrate by cosputtering method. Self-assembled well-ordered multilayer structure with alternating Ti- and V-rich epitaxial thin layer was obtained by thermal annealing via a spinodal decomposition mechanism. The structured thermochromic films demonstrate superior optical modulation upon phase transition, with significantly reduced transition temperature. The results provide a facile and novel approach to fabricate smart structures with excellent performance. PMID:26937588

  2. Control over Structure and Function of Peptide Amphiphile Supramolecular Assemblies through Molecular Design and Energy Landscapes

    Science.gov (United States)

    Tantakitti, Faifan

    Supramolecular chemistry is a powerful tool to create a material of a defined structure with tunable properties. This strategy has led to catalytically active, bioactive, and environment-responsive materials, among others, that are valuable in applications ranging from sensor technology to energy and medicine. Supramolecular polymers formed by peptide amphiphiles (PAs) have been especially relevant in tissue regeneration due to their ability to form biocompatible structures and mimic many important signaling molecules in biology. These supramolecular polymers can form nanofibers that create networks which mimic natural extracellular matrices. PA materials have been shown to induce growth of blood vessels, bone, cartilage, and nervous tissue, among others. The work described in this thesis not only studied the relationship between molecular structure and functions of PA assemblies, but also uncovered a powerful link between the energy landscape of their supramolecular self-assembly and the ability of PA materials to interact with cells. In chapter 2, it is argued that fabricating fibrous nanostructures with defined mechanical properties and decoration with bioactive molecules is not sufficient to create a material that can effectively communicate with cells. By systemically placing the fibronectin-derived RGDS epitope at increasing distances from the surface of PA nanofibers through a linker of one to five glycine residues, integrin-mediated RGDS signaling was enhanced. The results suggested that the spatial presentation of an epitope on PA nanofibers strongly influences the bioactivity of the PA substrates. In further improving functionality of a PA-based scaffold to effectively direct cell growth and differentiation, chapter 3 explored the use of a cell microcarrier to compartmentalize and simultaneously tune insoluble and soluble signals in a single matrix. PA nanofibers were incorporated at the surface of the microcarrier in order to promote cell adhesion, while

  3. Guided post-acceleration of laser-driven ions by a miniature modular structure

    Science.gov (United States)

    Kar, Satyabrata; Ahmed, Hamad; Prasad, Rajendra; Cerchez, Mirela; Brauckmann, Stephanie; Aurand, Bastian; Cantono, Giada; Hadjisolomou, Prokopis; Lewis, Ciaran L. S.; Macchi, Andrea; Nersisyan, Gagik; Robinson, Alexander P. L.; Schroer, Anna M.; Swantusch, Marco; Zepf, Matt; Willi, Oswald; Borghesi, Marco

    2016-04-01

    All-optical approaches to particle acceleration are currently attracting a significant research effort internationally. Although characterized by exceptional transverse and longitudinal emittance, laser-driven ion beams currently have limitations in terms of peak ion energy, bandwidth of the energy spectrum and beam divergence. Here we introduce the concept of a versatile, miniature linear accelerating module, which, by employing laser-excited electromagnetic pulses directed along a helical path surrounding the laser-accelerated ion beams, addresses these shortcomings simultaneously. In a proof-of-principle experiment on a university-scale system, we demonstrate post-acceleration of laser-driven protons from a flat foil at a rate of 0.5 GeV m-1, already beyond what can be sustained by conventional accelerator technologies, with dynamic beam collimation and energy selection. These results open up new opportunities for the development of extremely compact and cost-effective ion accelerators for both established and innovative applications.

  4. Dielectric laser acceleration of electrons in the vicinity of single and double grating structures - theory and simulations

    CERN Document Server

    Breuer, John; Hommelhoff, Peter

    2014-01-01

    Dielectric laser acceleration of electrons close to a fused-silica grating has recently been observed (Peralta et al., Nature 503, 91 (2013); Breuer, Hommelhoff, PRL 111, 134803 (2013)). Here we present the theoretical description of the near-fields close to such a grating that can be utilized to accelerate non-relativistic electrons. We also show simulation results of electrons interacting with such fields in a single and double grating structure geometry and discuss dephasing effects that have to be taken into account when designing a photonic-structure-based accelerator for non-relativistic electrons. We further model the space charge effect using the paraxial ray equation and discuss the resulting expected peak currents for various parameter sets.

  5. Structure-property relationships in self-assembling peptide hydrogels, homopolypeptides and polysaccharides

    Science.gov (United States)

    Hule, Rohan A.

    The main objective of this dissertation is to investigate quantitative structure-property relationships in a variety of molecular systems including de novo designed peptides, peptide amphiphiles, polysaccharides and high molecular weight polypeptides. Peptide molecules consisting of 20 amino acids were designed to undergo thermally triggered intramolecular folding into asymmetric beta-hairpins and intermolecular self-assembly via a strand swapping mechanism into physically crosslinked fibrillar hydrogels. The self-assembly mechanism was confirmed by multiple characterization techniques such as circular dichroism and FITR spectroscopy, atomic force and transmission electron microscopy and small angle neutron scattering. Three distinct fibrillar nanostructures, i.e. non-twisted, twisted and laminated were produced, depending on the degree of strand asymmetry and peptide registry. Differences in the fibrillar morphology have a direct consequence on the mechanical properties of the hydrogels, with the laminated hydrogels exhibiting a significantly higher elastic modulus as compared to the twisted or non-twisted fibrillar hydrogels. SANS and cryo-TEM data reveal that the self-assembled fibrils form networks that are fractal in nature. Models employed to elucidate the fractal behavior can relate changes in the correlation lengths, low q (network), and high q (fibrillar) fractal exponents to the distinct fibrillar nanomorphology. The fractal dimension of the networks varies significantly, from a mass to a surface fractal and can be directly related to the local fibrillar morphology and changes in the peptide concentration. Transitions in the fractal behavior seen in the high q regime can be attributed to self-assembly kinetics. An identical model can be used to establish a direct correlation between the bulk properties and changes in both, the network density and underlying morphology, of a modified peptide-based hydrogel. As in the case of asymmetric peptides, changes in

  6. Molecular Processes Underlying the Structure and Assembly of Thin Films and Nanoparticles at Complex interfaces

    Energy Technology Data Exchange (ETDEWEB)

    Richmond, Geraldine [Univ. of Oregon, Eugene, OR (United States)

    2016-06-03

    differences in how water behaves at hydrophobic self-assembled monolayer (SAMS)/water interfaces relative to the organic liquid/water interfaces. Several monolayer films have been examined in these studies using a combination of vibrational sum frequency spectroscopy (VSFS), contact angle measurements and AFM. At the hydrocarbon monolayer/water interface we find that water has a weak bonding interaction with the monolayer film that results in an orientation of water at the terminus of these hydrocarbon chains. The water-film interaction is still present for fluorinated films but it is found to be considerably weaker. Hydration and Surfactant Adsorption at Salt/Water Interfaces This set of studies has examined the molecular characteristics of the CaF2/water interface using VSFS. Our first studies detailed the structure and orientation of water molecules adsorbed at this mineral surfaces including studies of the surface in the presence of aqueous solutions of salts. These studies have been followed by a series of static and time-resolved studies of the adsorption of carboxylic acid containing organics at this surface, specifically carboxylic acid surfactants and acetic acid. In the latter we have developed a new method for time resolved studies that involve sequential wavelength tuning and automated control of spatial beam overlap at the target can probe amplitude changes of sum-frequency resonances in widely spaced infrared regions. This offers great advantages for the study of the synchronism of molecular processes at interfaces. This approach is particularly suitable to investigate the synchronization of interfacial processes such as surfactant adsorption at charged mineral surfaces. Macromolecular Assembly at Liquid/Liquid Interfaces Macromolecular assembly at the interface between water and a hydrophobic surface underlies some of the most important biological and environmental processes on the planet. Our work has examined polymer adsorption and assembly of

  7. Surface Analysis of OFE-Copper X-Band Accelerating Structures and Possible Correlation to RF Breakdown Events

    CERN Document Server

    Harvey, S E; Kirby, R E; Marcelja, F; Adamson, K; Garwin, E L

    2003-01-01

    X-band accelerator structures meeting the Next Linear Collider (NLC) design requirements have been found to suffer vacuum surface damage caused by radio frequency (RF) breakdown, when processed to high electric-field gradients. Improved understanding of these breakdown events is desirable for the development of structure designs, fabrication procedures, and processing techniques that minimize structure damage. RF reflected wave analysis and acoustic sensor pickup have provided breakdowns localization in RF structures. Particle contaminations found following clean autopsy of four RF-processed travelling wave structures, have been catalogued and analyzed. Their influence on RF breakdown, as well as that of several other material-based properties, will be discussed.

  8. ConnectViz: Accelerated Approach for Brain Structural Connectivity Using Delaunay Triangulation.

    Science.gov (United States)

    Adeshina, A M; Hashim, R

    2016-03-01

    Stroke is a cardiovascular disease with high mortality and long-term disability in the world. Normal functioning of the brain is dependent on the adequate supply of oxygen and nutrients to the brain complex network through the blood vessels. Stroke, occasionally a hemorrhagic stroke, ischemia or other blood vessel dysfunctions can affect patients during a cerebrovascular incident. Structurally, the left and the right carotid arteries, and the right and the left vertebral arteries are responsible for supplying blood to the brain, scalp and the face. However, a number of impairment in the function of the frontal lobes may occur as a result of any decrease in the flow of the blood through one of the internal carotid arteries. Such impairment commonly results in numbness, weakness or paralysis. Recently, the concepts of brain's wiring representation, the connectome, was introduced. However, construction and visualization of such brain network requires tremendous computation. Consequently, previously proposed approaches have been identified with common problems of high memory consumption and slow execution. Furthermore, interactivity in the previously proposed frameworks for brain network is also an outstanding issue. This study proposes an accelerated approach for brain connectomic visualization based on graph theory paradigm using compute unified device architecture, extending the previously proposed SurLens Visualization and computer aided hepatocellular carcinoma frameworks. The accelerated brain structural connectivity framework was evaluated with stripped brain datasets from the Department of Surgery, University of North Carolina, Chapel Hill, USA. Significantly, our proposed framework is able to generate and extract points and edges of datasets, displays nodes and edges in the datasets in form of a network and clearly maps data volume to the corresponding brain surface. Moreover, with the framework, surfaces of the dataset were simultaneously displayed with the

  9. ConnectViz: Accelerated Approach for Brain Structural Connectivity Using Delaunay Triangulation.

    Science.gov (United States)

    Adeshina, A M; Hashim, R

    2016-03-01

    Stroke is a cardiovascular disease with high mortality and long-term disability in the world. Normal functioning of the brain is dependent on the adequate supply of oxygen and nutrients to the brain complex network through the blood vessels. Stroke, occasionally a hemorrhagic stroke, ischemia or other blood vessel dysfunctions can affect patients during a cerebrovascular incident. Structurally, the left and the right carotid arteries, and the right and the left vertebral arteries are responsible for supplying blood to the brain, scalp and the face. However, a number of impairment in the function of the frontal lobes may occur as a result of any decrease in the flow of the blood through one of the internal carotid arteries. Such impairment commonly results in numbness, weakness or paralysis. Recently, the concepts of brain's wiring representation, the connectome, was introduced. However, construction and visualization of such brain network requires tremendous computation. Consequently, previously proposed approaches have been identified with common problems of high memory consumption and slow execution. Furthermore, interactivity in the previously proposed frameworks for brain network is also an outstanding issue. This study proposes an accelerated approach for brain connectomic visualization based on graph theory paradigm using compute unified device architecture, extending the previously proposed SurLens Visualization and computer aided hepatocellular carcinoma frameworks. The accelerated brain structural connectivity framework was evaluated with stripped brain datasets from the Department of Surgery, University of North Carolina, Chapel Hill, USA. Significantly, our proposed framework is able to generate and extract points and edges of datasets, displays nodes and edges in the datasets in form of a network and clearly maps data volume to the corresponding brain surface. Moreover, with the framework, surfaces of the dataset were simultaneously displayed with the

  10. Signatures of self-assembly in size distributions of wood members in dam structures of Castor canadensis

    Directory of Open Access Journals (Sweden)

    David M. Blersch

    2014-12-01

    Full Text Available Beavers (Castor canadensis construct dams on rivers throughout most of their historical range in North America, and their impact on water patterns in the landscape is considerable. Dam formation by beavers involves two processes: (1 intentional construction through the selection and placement of wood and sediment, which facilitates (2 the passive capture and accretion of suspended wood and sediment. The second process is a self-assembly mechanism that the beavers leverage by utilizing energy subsidies of watershed transport processes. The relative proportion of beaver activity to self-assembly processes in dam construction, however, is unknown. Here we show that lotic self-assembly processes account for a substantial portion of the work expended in beaver dam construction. We found through comprehensive measurement of the stick dimensions that the distributions for diameter, length, and volume are log-normal. By noting evidence of teeth markings, we determined that size distributions skewed significantly larger for wood handled by beavers compared to those that were not. Subsequent mass calculations suggest that beavers perform 50%–70% of the work of wood member placement for dam assembly, with riparian self-assembly processes contributing the remainder. Additionally, our results establish a benchmark for assessing the proportion of self-assembly work in similar riparian structures.

  11. Assembly and Structure of alpha-helical Peptide Films on Hydrophobic Fluorocarbon Surfaces

    Energy Technology Data Exchange (ETDEWEB)

    Weidner, T.; Samual, N; McCrea, K; Gamble, L; Ward, R; Castner, D

    2010-01-01

    The structure, orientation, and formation of amphiphilic {alpha}-helix model peptide films on fluorocarbon surfaces has been monitored with sum frequency generation (SFG) vibrational spectroscopy, near-edge x-ray absorption fine structure (NEXAFS) spectroscopy, and x-ray photoelectron spectroscopy (XPS). The {alpha}-helix peptide is a 14-mer of hydrophilic lysine and hydrophobic leucine residues with a hydrophobic periodicity of 3.5. This periodicity yields a rigid amphiphilic peptide with leucine and lysine side chains located on opposite sides. XPS composition analysis confirms the formation of a peptide film that covers about 75% of the surface. NEXAFS data are consistent with chemically intact adsorption of the peptides. A weak linear dichroism of the amide {pi}* is likely due to the broad distribution of amide bond orientations inherent to the {alpha}-helical secondary structure. SFG spectra exhibit strong peaks near 2865 and 2935 cm{sup -1} related to aligned leucine side chains interacting with the hydrophobic surface. Water modes near 3200 and 3400 cm{sup -1} indicate ordering of water molecules in the adsorbed-peptide fluorocarbon surface interfacial region. Amide I peaks observed near 1655 cm{sup -1} confirm that the secondary structure is preserved in the adsorbed peptide. A kinetic study of the film formation process using XPS and SFG showed rapid adsorption of the peptides followed by a longer assembly process. Peptide SFG spectra taken at the air-buffer interface showed features related to well-ordered peptide films. Moving samples through the buffer surface led to the transfer of ordered peptide films onto the substrates.

  12. The Structure of HIV-1 Rev Filaments Suggests a Bilateral Model for Rev-RRE Assembly.

    Science.gov (United States)

    DiMattia, Michael A; Watts, Norman R; Cheng, Naiqian; Huang, Rick; Heymann, J Bernard; Grimes, Jonathan M; Wingfield, Paul T; Stuart, David I; Steven, Alasdair C

    2016-07-01

    HIV-1 Rev protein mediates the nuclear export of viral RNA genomes. To do so, Rev oligomerizes cooperatively onto an RNA motif, the Rev response element (RRE), forming a complex that engages with the host nuclear export machinery. To better understand Rev oligomerization, we determined four crystal structures of Rev N-terminal domain dimers, which show that they can pivot about their dyad axis, giving crossing angles of 90° to 140°. In parallel, we performed cryoelectron microscopy of helical Rev filaments. Filaments vary from 11 to 15 nm in width, reflecting variations in dimer crossing angle. These structures contain additional density, indicating that C-terminal domains become partially ordered in the context of filaments. This conformational variability may be exploited in the assembly of RRE/Rev complexes. Our data also revealed a third interface between Revs, which offers an explanation for how the arrangement of Rev subunits adapts to the "A"-shaped architecture of the RRE in export-active complexes. PMID:27265851

  13. In vitro study on the alterations of brain tubulin structure and assembly affected by magnetite nanoparticles.

    Science.gov (United States)

    Dadras, Ali; Riazi, Gholam Hossein; Afrasiabi, Ali; Naghshineh, Ali; Ghalandari, Behafarid; Mokhtari, Farzad

    2013-03-01

    In recent decades, considerable efforts have been made to understand the mechanism of memory, cognition, and relevant neurodegenerative diseases in the human brain. Several studies have shown the importance of microtubule proteins in the memory mechanism and memory dysfunction. Microtubules possess dynamicity, which is essential for functions of neuronal networks. Microtubule-associated proteins, i.e., tau, play vital roles in microtubule stability. On the other hand, the ferromagnetic mineral magnetite (Fe(3)O(4)) has been detected in the normal human brain, and elevated levels of magnetite are also observed in the brains of Alzheimer's disease patients. Therefore, we propose that a relationship between microtubule organization in axons and brain magnetite nanoparticles is possible. In this study we found alterations of microtubule polymerization in the presence of increasing concentrations of magnetite through transmission electron microscopy images and a turbidimetry method. Structural changes of microtubule and tau protein, as an essential microtubule-associated protein for tubulin assembly, were detected via circular dichroism spectroscopy, intrinsic fluorescence, and 8-anilino-1-naphthalenesulfonic acid fluorometry. We predicted three possible binding sites on tau protein and one possible binding site on tubulin dimer for magnetite nanoparticles. Magnetite also causes the morphology of PC12 cells to change abnormally and cell viability to decrease. Finally, we suggest that magnetite changes microtubule dynamics and polymerization through two paths: (1) changing the secondary and tertiary structure of tubulin and (2) binding to either tubulin dimer or tau protein and preventing tau-tubulin interaction.

  14. Design, realization and test of C-band accelerating structures for the SPARC_LAB linac energy upgrade

    Science.gov (United States)

    Alesini, D.; Bellaveglia, M.; Biagini, M. E.; Boni, R.; Brönnimann, M.; Cardelli, F.; Chimenti, P.; Clementi, R.; Di Pirro, G.; Di Raddo, R.; Ferrario, M.; Ficcadenti, L.; Gallo, A.; Kalt, R.; Lollo, V.; Palumbo, L.; Piersanti, L.; Schilcher, T.

    2016-11-01

    The energy upgrade of the SPARC_LAB photo-injector at LNF-INFN (Frascati, Italy) has been originally conceived replacing one low gradient (13 MV/m) 3 m long SLAC type S-band traveling wave (TW) section with two 1.4 m long C-band accelerating sections. Due to the higher gradients reached by such structures, a higher energy beam can be obtained within the same accelerator footprint length. The use of C-band structures for electron acceleration has been adopted in a few FEL linacs in the world, among others, the Japanese Free Electron Laser at SPring-8 and the SwissFEL at Paul Scherrer Institute (PSI). The C-band sections are traveling wave, constant impedance structures with symmetric input and output axial couplers. Their design has been optimized for the operation with a SLED RF pulse compressor. In this paper we briefly review their design criteria and we focus on the construction, tuning, low and high-power RF tests. We also illustrate the design and realization of the dedicated low level RF system that has been done in collaboration with PSI in the framework of the EU TIARA project. Preliminary experimental results appear to confirm the operation of such structures with accelerating gradients larger than 35 MV/m.

  15. Ion Acceleration at Earth, Saturn and Jupiter and its Global Impact on Magnetospheric Structure

    Science.gov (United States)

    Brandt, Pontus

    2016-07-01

    The ion plasma pressures at Earth, Saturn and Jupiter are significant players in the electrodynamic force-balance that governs the structure and dynamics of these magnetospheres. There are many similarities between the physical mechanisms that are thought to heat the ion plasma to temperatures that even exceed those of the solar corona. In this presentation we compare the ion acceleration mechanisms at the three planetary magnetospheres and discuss their global impacts on magnetopsheric structure. At Earth, bursty-bulk flows, or "bubbles", have been shown to accelerate protons and O+ to high energies by the earthward moving magnetic dipolarization fronts. O+ ions display a more non-adiabatic energization in response to these fronts than protons do as they are energized and transported in to the ring-current region where they reach energies of several 100's keV. We present both in-situ measurements from the NASA Van Allen Probes Mission and global Energetic Neutral (ENA) images from the High-Energy Neutral Atom (HENA) Camera on board the IMAGE Mission, that illustrate these processes. The global impact on the magnetospheric structure is explored by comparing the empirical magnetic field model TS07d for given driving conditions with global plasma pressure distributions derived from the HENA images. At Saturn, quasi-periodic energization events, or large-scale injections, occur beyond about 9 RS around the post-midnight sector, clearly shown by the Ion and Neutral Atom Camera (INCA) on board the Cassini mission. In contrast to Earth, the corotational drift dominates even the energetic ion distributions. The large-scale injections display similar dipolarization front features can be found and there are indications that like at Earth the O+ responds more non-adiabatically than protons do. However, at Saturn there are also differences in that there appears to be energization events deep in the inner magnetosphere (6-9 RS) preferentially occurring in the pre

  16. Structural change and growth accelerations in Asia and Latin America : a new sectoral data set

    NARCIS (Netherlands)

    Timmer, M.P.; de Vries, G.J.

    2009-01-01

    Recent studies of economic growth have moved from explaining average trends in long-term growth to study growth accelerations and decelerations. In this paper we argue that the standard shift-share analysis is inadequate to measure the contribution of sectors to accelerations in productivity. We pre

  17. Silica promoted self-assembled mesoporous aluminas. Impact of the silica precursor on the structural, textural and acidic properties

    NARCIS (Netherlands)

    Perez, Lidia Lopez; Zarubina, Valeriya; Mayoral, Alvaro; Melian-Cabrera, Ignacio

    2015-01-01

    This paper investigates the effect of silica addition on the structural, textural and acidic properties of an evaporation induced self-assembled (EISA) mesoporous alumina. Two silica addition protocols were applied while maintaining the EISA synthesis route. The first route is based on the addition

  18. Structural variation in two human genomes mapped at single-nucleotide resolution by whole genome de novo assembly

    DEFF Research Database (Denmark)

    Li, Yingrui; Zheng, Hancheng; Luo, Ruibang;

    2011-01-01

    Here we use whole-genome de novo assembly of second-generation sequencing reads to map structural variation (SV) in an Asian genome and an African genome. Our approach identifies small- and intermediate-size homozygous variants (1-50 kb) including insertions, deletions, inversions and their preci...

  19. Self-assembled structures of amphiphilic ionic block copolymers: Theory, self-consistent field modeling and experiment

    NARCIS (Netherlands)

    Borisov, O.V.; Zhulina, E.B.; Leermakers, F.A.M.; Muller, A.H.E.

    2011-01-01

    We present an overview of statistical thermodynamic theories that describe the self-assembly of amphiphilic ionic/hydrophobic diblock copolymers in dilute solution. Block copolymers with both strongly and weakly dissociating (pH-sensitive) ionic blocks are considered. We focus mostly on structural a

  20. Insight into structure and assembly of the nuclear pore complex by utilizing the genome of a eukaryotic thermophile

    DEFF Research Database (Denmark)

    Amlacher, Stefan; Sarges, Phillip; Flemming, Dirk;

    2011-01-01

    Despite decades of research, the structure and assembly of the nuclear pore complex (NPC), which is composed of ~30 nucleoporins (Nups), remain elusive. Here, we report the genome of the thermophilic fungus Chaetomium thermophilum (ct) and identify the complete repertoire of Nups therein. The the...... of a thermophilic eukaryote for studying complex molecular machines....

  1. Tuning the morphology of self-assembled nano-structures of phthalocyaninato zinc complex bearing two binaphthyl units

    International Nuclear Information System (INIS)

    The self-assembly properties of phthalocyaninato zinc complex Zn{Pc(OBNP)2} bearing two aromatic binaphthyl units at the non-peripheral positions in mixed chloroform and methanol solution have been studied by Fourier transform infrared (FTIR) spectroscopy, transmission electronic microscopy (TEM), scanning electronic microscopy (SEM), and X-ray diffraction (XRD) techniques. The compound self-assembles into ordered nano-structures with hollow sphere morphology depending on the intermolecular π–π interaction at ambient temperature. However, addition of equal amount of 1,4-diazabicyclo[2.2.2]octane (DABCO) into the same solution system induces the formation of nano-rods, due to the dominant Zn–N metal–ligand coordination bonding interaction between the zinc center of Zn{Pc(OBNP)2} molecule and the nitrogen atom of DABCO molecule during the self-assembly process. This reveals the effect of synergistic noncovalent interaction of π–π interaction with metal–ligand coordination bonding on tuning the morphology of self-assembled nano-structures of Zn{Pc(OBNP)2}. The electronic absorption spectra of both the nano-scale hollow spheres and nano-rods have a blue-shift, compared with that of the compound in chloroform solution, which reveals the formation of H-aggregates in the two kinds of aggregates. Furthermore, XRD data confirm the molecular packing models in these aggregates. The present study will be helpful in designing and preparing self-assembled nano-structures of phthalocyanine derivatives with controlled molecular packing conformation and morphology through molecular modification. - Graphical abstract: Competition and/or cooperation between the inter-molecular metal–ligand coordination bonding and π–π interaction of phthalocyaninato zinc complex molecules lead to different molecular packing conformation and in turn different nano-structures during the self-assembly process. Highlights: ► Zn{Pc(OBNP)2} self-assembles into ordered nano

  2. Aggressive, accelerated subdomain smoothers for Stokes flow with highly heterogeneous viscosity structure

    Science.gov (United States)

    Sanan, Patrick; May, Dave; Schenk, Olaf; Rupp, Karl

    2016-04-01

    Scalable solvers for mantle convection and lithospheric dynamics with highly heterogeneous viscosity structure typically require the use of a multigrid method. To leverage new hybrid CPU-accelerator architectures on leadership compute clusters, multigrid hierarchies which can reduce communication and use high available arithmetic intensity are at a premium, motivating more aggressive coarsening schemes and smoothers. We present results of a comparative study of two competitive GPU-enabled subdomain smoothers within an additive Schwarz method. Chebyshev-Jacobi smoothing has been shown to be an effective smoother, and its nature as a low-communication method built from basic linear algebra routines allows its use on a wide range of devices with current libraries. ILU smoothing is also of interest and is known to provide robust smoothing in some cases, but has traditionally been difficult to use in a fine-grained parallel environment. However, a recently-introduced variant by Chow and Patel allows for incomplete factorizations to be computed and applied in these environments, hence allowing us to study them as well. We use and extend the pTatin3D, PETSc, and ViennaCL libraries to integrate promising methods into a realistic application framework.

  3. Control system for linear induction accelerator LIA-2: the structure and hardware

    International Nuclear Information System (INIS)

    The Power Linear Induction Accelerator (LIA) for flash radiography is commissioned in the Budker Institute of Nuclear Physics (BINP) in Novosibirsk. It is a facility producing pulsed electron beam with energy 2 MeV, current 1 kA and spot size less than 2 mm. Beam quality and reliability are required for radiography experiments. The control system of LIA is functionally divided into four subsystems: pulsed power control subsystem, timing subsystem, waveform recording subsystem and interlock subsystem. Features and structure of distributed control system ensuring these demands are discussed. Control system hardware based on CompactPCI and PMC standards is embedded directly into power pulsed generators. CAN-BUS and Ethernet are used as interconnection protocols. Parameters and essential details for measuring equipment and control electronics produced in BINP and available COTS are presented. LIA was tested at single pulse regime of operation and a diameter of the electron beam less than 1.3 mm was achieved. High reliability of the hardware was demonstrated in an environment of high-voltage discharges

  4. Magnetic and Structural Design of a 15 T $Nb_3Sn$ Accelerator Depole Model

    Energy Technology Data Exchange (ETDEWEB)

    Kashikhin, V. V. [Fermilab; Andreev, N. [Fermilab; Barzi, E. [Fermilab; Novitski, I. [Fermilab; Zlobin, A. V. [Fermilab

    2015-01-01

    Hadron Colliders (HC) are the most powerful discovery tools in modern high energy physics. A 100 TeV scale HC with a nominal operation field of at least 15 T is being considered for the post-LHC era. The choice of a 15 T nominal field requires using the Nb3Sn technology. Practical demonstration of this field level in an accelerator-quality magnet and substantial reduction of the magnet costs are the key conditions for realization of such a machine. FNAL has started the development of a 15 T $Nb_{3}Sn$ dipole demonstrator for a 100 TeV scale HC. The magnet design is based on 4-layer shell type coils, graded between the inner and outer layers to maximize the performance. The experience gained during the 11-T dipole R&D campaign is applied to different aspects of the magnet design. This paper describes the magnetic and structural designs and parameters of the 15 T $Nb_3Sn$ dipole and the steps towards the demonstration model.

  5. Influence of solidification accelerators on structure formation of anhydrite-containing binders

    Energy Technology Data Exchange (ETDEWEB)

    Anikanova, L., E-mail: alasmit@mail.ru; Volkova, O., E-mail: v.olga.nikitina@gmail.com; Kudyakov, A.; Sarkisov, Y.; Tolstov, D. [Tomsk State University of Architecture and Building, 2 Solyanaya sq., Tomsk, 634003 (Russian Federation)

    2016-01-15

    The article presents results of scientific analysis of chemical additives influence on acid fluoride binder. It was found that the influence of sulfate nature additives on the process of hydration and solidification of the binder is similar to influence of additives on indissoluble anhydrite. Additives with SO{sub 4}{sup 2−} anion NO{sup −} are more efficient. The mentioned additives according to accelerating effect belong to the following succession: K{sub 2}SO{sub 4} > Na{sub 2}SO{sub 4} > FeSO{sub 4} > MgSO{sub 4}. Facilitation of the process of hydration and solidification of the binder, increase in density and durability of the binder (32 MPa) is to the greatest extent achieved with the introduction of 2% sodium sulfate additive of the binder’s mass into the composition of the binder along with the ultrasonic treatment of water solution. Directed crystal formation process with healing of porous structure by new growths presented as calcium sulfate dehydrate and hydroglauberite provides positive effect.

  6. Self-assembly of silica colloidal crystal thin films with tuneable structural colours over a wide visible spectrum

    Science.gov (United States)

    Gao, Weihong; Rigout, Muriel; Owens, Huw

    2016-09-01

    Colloidal crystal (CC) thin films that produce structural colours over a wide visible spectrum have been self-assembled from silica nanoparticles (SNPs) using a natural sedimentation method. A series of colloidal suspensions containing uniform SNPs (207-350 nm) were prepared using the Stöber method. The prepared silica suspensions were directly subjected to natural sedimentation at an elevated temperature. The SNPs were deposited under the force of gravity and self-assembled into an ordered array. The solid CC thin films produced structural colours over a wide visible spectrum from red to violet. Visual inspection and colorimetric measurements indicated that the structural colour of the CC thin film is tuneable by varying the SNPs diameters and the viewing angles. The closely packed face-centred cubic (fcc) structure of the CC thin film was confirmed using SEM imaging and was in agreement with the intense colour observed from the film surface.

  7. Structural integrity assessment and stress measurement of CHASNUPP-1 fuel assembly skeleton

    Energy Technology Data Exchange (ETDEWEB)

    Waseem,, E-mail: wazim_me@hotmail.com; Elahi, N.; Murtaza, G.; Siddiqui, A.A.

    2014-01-15

    Highlights: • FE model of CHASNUPP-1 FA Skeleton produced, using Shell181 Element. • Non-linear buckling analysis has been performed. • Structural integrity and stress measurement of FA skeleton is calculated. • Test results obtained at each strain gauge is compared with FE results at same locations. • Results of both studies are comparable, which validate the FE methodology. -- Abstract: A fuel assembly (FA) structure without fuel rods is called FA skeleton which is a long and flexible structure. This study has been made in an attempt to find the structural integrity of the Chashma Nuclear Power Plant-1 (CHASNUPP-1) FA Skeleton at room temperature in air. Non-linear buckling analysis has been performed using ANSYS 13.0, in-order to determine the buckling behavior of the FA skeleton as well as the location/values of the maximum stress intensity and stresses developed in axial direction under applied compression load of 4900 N. The finite element (FE) model of spacer grids, guide thimbles with dash-pots and flow holes, in addition to spot welds between spacer grids and guide thimbles, has been developed using Shell 181 element. The FA skeleton is a non-straight structure. Its actual behavior of the geometry is non-linear. The value of the perturbation force is related to the geometry of the model and/or the tolerance defined for the geometry. Therefore, a sensitivity study has been made to determine the appropriate value of an arbitrary perturbation load. It has been observed that FA skeleton deformation values obtained through FE Analysis and Experiment (Technical Report, 1994a,b) under applied compression load are comparable and show linear behaviors. Therefore, it is confirmed that buckling of FA skeleton will not occur at the specified load. Moreover, the values of stresses obtained at different locations of the guide thimbles are also comparable with the stress values of the experiment determined at the same locations through strain gauges. Since the

  8. Structural integrity assessment and stress measurement of CHASNUPP-1 fuel assembly skeleton

    International Nuclear Information System (INIS)

    Highlights: • FE model of CHASNUPP-1 FA Skeleton produced, using Shell181 Element. • Non-linear buckling analysis has been performed. • Structural integrity and stress measurement of FA skeleton is calculated. • Test results obtained at each strain gauge is compared with FE results at same locations. • Results of both studies are comparable, which validate the FE methodology. -- Abstract: A fuel assembly (FA) structure without fuel rods is called FA skeleton which is a long and flexible structure. This study has been made in an attempt to find the structural integrity of the Chashma Nuclear Power Plant-1 (CHASNUPP-1) FA Skeleton at room temperature in air. Non-linear buckling analysis has been performed using ANSYS 13.0, in-order to determine the buckling behavior of the FA skeleton as well as the location/values of the maximum stress intensity and stresses developed in axial direction under applied compression load of 4900 N. The finite element (FE) model of spacer grids, guide thimbles with dash-pots and flow holes, in addition to spot welds between spacer grids and guide thimbles, has been developed using Shell 181 element. The FA skeleton is a non-straight structure. Its actual behavior of the geometry is non-linear. The value of the perturbation force is related to the geometry of the model and/or the tolerance defined for the geometry. Therefore, a sensitivity study has been made to determine the appropriate value of an arbitrary perturbation load. It has been observed that FA skeleton deformation values obtained through FE Analysis and Experiment (Technical Report, 1994a,b) under applied compression load are comparable and show linear behaviors. Therefore, it is confirmed that buckling of FA skeleton will not occur at the specified load. Moreover, the values of stresses obtained at different locations of the guide thimbles are also comparable with the stress values of the experiment determined at the same locations through strain gauges. Since the

  9. Geometrically focused neutral beam accelerators

    International Nuclear Information System (INIS)

    A more reliable 40 kV, 65 A power supply drain at 0.4 A/cm2, neutral-beam accelerator was developed for the Tandem Mirror Experiment (TMX). Multiple slotted aperture grids of 60% transparency are fabricated from refractory metal wires mounted to form a spherical surface. This geometrically focuses the beam by aiming individual beamlets at the center of curvature of the spherical grid (r = 3.2 m). We attain greater reliability and faster conditioning with geometrical focusing than with the previous technique of electrostatically steering beamlets to a common point. Electrostatic steering, accomplished by offsetting grid wires, is satisfactory if the offset of a beamlet is much less than the distance from the beamlet to the grids. It was found that Pierce Angle entrance grids performed better if sharper edged. A redesigned accelerator grid support structure reduced the number of ceramic-to-metal vacuum joints, and eliminated O rings between precisely aligned parts. The suppressor grid feedthrough is required to withstand a maximum voltage of 15 kV occurring during breakdown, greatly exceeding the operating voltage of 1.5 kV. Convenient fabrication and assembly techniques have been developed. Assembly of accelerators and plasma sources in a clean room appears to reduce the conditioning time. Following the successful testing of the prototype, eight 40 kV accelerators were built for TMX. Furthermore, ten 20 kV versions were built that are modifiable to 40 kV by exchanging the entrance grid

  10. Self-assembly of the hydrophobin SC3 proceeds via two structural intermediates

    NARCIS (Netherlands)

    Vocht, Marcel L. de; Reviakine, Ilya; Ulrich, Wolf-Peter; Bergsma-Schutter, Wilma; Wösten, Han A.B.; Vogel, Horst; Brisson, Alain; Wessels, Joseph G.H.; Robillard, George T.

    2002-01-01

    Hydrophobins self assemble into amphipathic films at hydrophobic–hydrophilic interfaces. These proteins are involved in a broad range of processes in fungal development. We have studied the conformational changes that accompany the self-assembly of the hydrophobin SC3 with polarization-modulation in

  11. Thymine- and Adenine-Functionalized Polystyrene Form Self-Assembled Structures through Multiple Complementary Hydrogen Bonds

    Directory of Open Access Journals (Sweden)

    Yu-Shian Wu

    2014-06-01

    Full Text Available In this study, we investigated the self-assembly of two homopolymers of the same molecular weight, but containing complementary nucleobases. After employing nitroxide-mediated radical polymerization to synthesize poly(vinylbenzyl chloride, we converted the polymer into poly(vinylbenzyl azide through a reaction with NaN3 and then performed click chemistry with propargyl thymine and propargyl adenine to yield the homopolymers, poly(vinylbenzyl triazolylmethyl methylthymine (PVBT and poly(vinylbenzyl triazolylmethyl methyladenine (PVBA, respectively. This PVBT/PVBA blend system exhibited a single glass transition temperature over the entire range of compositions, indicative of a miscible phase arising from the formation of multiple strong complementary hydrogen bonds between the thymine and adenine groups of PVBT and PVBA, respectively; Fourier transform infrared and 1H nuclear magnetic resonance spectroscopy confirmed the presence of these noncovalent interactions. In addition, dynamic rheology, dynamic light scattering and transmission electron microscopy provided evidence for the formation of supramolecular network structures in these binary PVBT/PVBA blend systems.

  12. Structural and mechanistic insights into cooperative assembly of dimeric Notch transcription complexes

    Energy Technology Data Exchange (ETDEWEB)

    Arnett, Kelly L.; Hass, Matthew; McArthur, Debbie G.; Ilagan, Ma Xenia G.; Aster, Jon C.; Kopan, Raphael; Blacklow, Stephen C. (WU); (BWH); (DFCI)

    2010-11-12

    Ligand-induced proteolysis of Notch produces an intracellular effector domain that transduces essential signals by regulating the transcription of target genes. This function relies on the formation of transcriptional activation complexes that include intracellular Notch, a Mastermind co-activator and the transcription factor CSL bound to cognate DNA. These complexes form higher-order assemblies on paired, head-to-head CSL recognition sites. Here we report the X-ray structure of a dimeric human Notch1 transcription complex loaded on the paired site from the human HES1 promoter. The small interface between the Notch ankyrin domains could accommodate DNA bending and untwisting to allow a range of spacer lengths between the two sites. Cooperative dimerization occurred on the human and mouse Hes5 promoters at a sequence that diverged from the CSL-binding consensus at one of the sites. These studies reveal how promoter organizational features control cooperativity and, thus, the responsiveness of different promoters to Notch signaling.

  13. Effect of density and structure on dynamics within self-assembled monolayers

    Science.gov (United States)

    Stevens, Derrick; Scott, Mary; Bochinski, Jason; Clarke, Laura

    2009-03-01

    Previously, we have observed interacting dynamics within self-assembled alkylsiloxane monolayers, and characterized this motion via sensitive dielectric spectroscopy (along with more traditional techniques such as ellipsometry, contact angle, and force microscopy). In these monolayers, molecules are covalently bound to the surface and thus cannot spontaneously change density, as in an adsorbate system. We identified this relaxation as akin to the polyethylene-like glass transition observed in polymers with phase-segregated alkyl side chains [1]. As a next step, we deliberately manipulated the physical structure of the monolayers (via different film growth procedures and/or post-deposition heat treating) and the monolayer density (from ˜10% to full coverage), and observed the resultant changes in dynamics. This experimental system may prove a useful model for more complex materials, such as glassy polymers or traditional molecular glasses, where density cannot be explicitly tuned. As density increases, the steepness index increases, indicating a more complex or fragile relaxation. At low densities, the motion has an almost-Arrhenius dependence on temperature. [1] M.C. Scott, D.R. Stevens, J.R. Bochinski, L.I. Clarke, ACS Nano. DOI: 10.1021/nn800543j.

  14. Self-assembled micro-structured sensors for food safety in paper based food packaging

    International Nuclear Information System (INIS)

    Natural self-assembled microstructured particles (diatomaceous earth) were used to develop a gas sensor paper with detection mechanism based on visible and distinct color changes of the sensor paper when exposed to volatile basic nitrogen compounds. The coating formulation for paper was prepared by applying diatomites, polyvinyl alcohol (PVOH), and pH sensitive dyes on acidic paper substrate. The surface coating was designed to allow a maximum gas flow through the diatomite sensors. The produced sensor paper was tested for sensitivity using different ammonia concentrations and we observed a sensitivity lower limit at 63 ppm. As a comparison, the results show comparable sensitivity levels to carbon nanotube based sensor technologies reported in literature. - Highlights: • Novel sensor paper was developed using micro-structured diatomaceous earth and pH sensitive dye. • The functionality is based on pH sensitive dye to indicate spoilage of meat or fish by color change. • Diatomaceous earth was successfully immobilized to the polyvinyl alcohol coating. • The coating was engineered to maximize the exposure of the diatom morphology. • The sensor paper achieved very high sensitivities for ammonia gas detection

  15. Self-assembled micro-structured sensors for food safety in paper based food packaging

    Energy Technology Data Exchange (ETDEWEB)

    Hakovirta, M., E-mail: marko.hakovirta@storaenso.com; Aksoy, B.; Hakovirta, J.

    2015-08-01

    Natural self-assembled microstructured particles (diatomaceous earth) were used to develop a gas sensor paper with detection mechanism based on visible and distinct color changes of the sensor paper when exposed to volatile basic nitrogen compounds. The coating formulation for paper was prepared by applying diatomites, polyvinyl alcohol (PVOH), and pH sensitive dyes on acidic paper substrate. The surface coating was designed to allow a maximum gas flow through the diatomite sensors. The produced sensor paper was tested for sensitivity using different ammonia concentrations and we observed a sensitivity lower limit at 63 ppm. As a comparison, the results show comparable sensitivity levels to carbon nanotube based sensor technologies reported in literature. - Highlights: • Novel sensor paper was developed using micro-structured diatomaceous earth and pH sensitive dye. • The functionality is based on pH sensitive dye to indicate spoilage of meat or fish by color change. • Diatomaceous earth was successfully immobilized to the polyvinyl alcohol coating. • The coating was engineered to maximize the exposure of the diatom morphology. • The sensor paper achieved very high sensitivities for ammonia gas detection.

  16. Optical and structural properties of InGaAs self assembled quantum dots

    CERN Document Server

    Siverns, P D

    2001-01-01

    The success of 2D quantum well (QW) based optical devices has prompted research into further reducing the dimensionality to produce 0D quantum dots (QDs). This thesis investigates self-assembled InAs/GaAs QDs using optical and structural techniques. The effects of stacking QD layers are examined and the growth conditions necessary for emission at the technologically important wavelength of 1.3 mu m. In addition hydrogenation of QWs and QDs is shown to improve the optical efficiency by passivating defects in the barriers. Bilayers of QDs grown with different spacer layers were investigated using photoluminescence (PL) and scanning transmission electron microscopy (STEM). A redshift in the emission energy and narrowing of the linewidth was observed for the stacked dots and attributed to changes in the localised strain caused by vertical correlation. Energy dispersive X-ray (EDX) measurements revealed the dots to be indium rich areas within a 2D 'confining layer' rather than the accepted view of pyramidal struct...

  17. Electroluminescent characteristics of spin-assembled multilayer films with confined layer structure

    International Nuclear Information System (INIS)

    Multilayer films composed of poly(p-phenylene vinylene) (PPV) as the semiconducting polymer and poly(methacrylic acid) (PMAA) as the insulating polymer were fabricated by spin-assembly method. These films, comprising a confined layer structure, showed that the water contact angles are periodically and distinctly oscillated when the top surface layer is alternated between PPV precursor and PMAA. The turn-on voltage of the multilayer electroluminescent (EL) devices increased from 2.6 V to 9.8 V as the thickness of the PMAA layer inserted between neighboring PPV layers was increased from 0 (i.e., PPV single layer film) to 2.0 nm. Furthermore, the emission peaks in the photoluminescent and EL spectra of these devices were strongly blue-shifted due to excitons formed at the confined PPV layers. Particularly when inserting about 1.0 nm thick PMAA layers, which possibly induced a tunneling effect on the charge carriers (i.e., holes and electrons), these multilayer films decreased the mobility of the hole carriers in the PPV layers with strong hole transporting characteristics, and therefore increased the recombination probability in the emitting layer with confined geometry. As a result, the device efficiency was significantly improved in comparison with that of a PPV single layer device without PMAA layer and with that of devices with relatively thick PMAA layers of 1.4 or 2.0 nm

  18. Tumor spheroid assembly on hyaluronic acid-based structures: A review.

    Science.gov (United States)

    Carvalho, Marco P; Costa, Elisabete C; Miguel, Sónia P; Correia, Ilídio J

    2016-10-01

    Two-dimensional (2D) cell culture is the main methodology used for screening anticancer therapeutics. However, these 2D cellular models misrepresent the architecture of native tumors, leading, in some cases, to unsuccessful prediction of cancer cell response to drugs. To overcome such limitations, cell growth in three dimensions (3D) arises as an alternative to reproduce in vitro the cellular arrangement found in tumors. Among the 3D cancer models developed so far, spheroids are the most attractive since these are cellular aggregates that broadly mimic many features of solid tumors affecting humans, like cell-cell interactions. One of the most applied techniques for producing spheroids is the liquid overlay technique, in which cells aggregate due to their limited adhesion to certain biomaterials, usually agarose or agar. Recently, the suitability of hyaluronic acid (HA) for spheroids assembly and HA-cell surface receptor interactions has been investigated. Ergo, this review gathers a summary of different studies where HA-based structures were developed and used for tumor spheroids production in order to be used in vitro as reliable 3D tumor models for therapeutic screening purposes. PMID:27312623

  19. Crystal Structure of Prp5p Reveals Interdomain Interactions that Impact Spliceosome Assembly

    Directory of Open Access Journals (Sweden)

    Zhi-Min Zhang

    2013-12-01

    Full Text Available The DEAD-box adenosine triphosphatase (ATPase Prp5p facilitates U2 small nuclear ribonucleoprotein particle (snRNP binding to the intron branch site region during spliceosome assembly. We present crystal structures of S. cerevisiae Prp5p alone and in complex with ADP at 2.12 Å and 1.95 Å resolution. The three-dimensional packing of Prp5p subdomains differs strikingly from that so far observed in other DEAD-box proteins: two RecA-like subdomains adopt an “open state” conformation stabilized by extensive interactions involving sequences that flank the two subdomains. This conformation is distinct from that required for ATP hydrolysis. Consistent with this, Prp5p mutations that destabilize interdomain interactions exhibited increased ATPase activity in vitro and inhibited splicing of suboptimal branch site substrates in vivo, whereas restoration of interdomain interactions reversed these effects. We conclude that the Prp5p open state conformation is biologically relevant and that disruption of the interdomain interaction facilitates a large-scale conformational change of Prp5p during U2 snRNP-branch site recognition.

  20. Oscillatory behaviors and hierarchical assembly of contractile structures in intercalating cells

    Science.gov (United States)

    Fernandez-Gonzalez, Rodrigo; Zallen, Jennifer A.

    2011-08-01

    Fluctuations in the size of the apical cell surface have been associated with apical constriction and tissue invagination. However, it is currently not known if apical oscillatory behaviors are a unique property of constricting cells or if they constitute a universal feature of the force balance between cells in multicellular tissues. Here, we set out to determine whether oscillatory cell behaviors occur in parallel with cell intercalation during the morphogenetic process of axis elongation in the Drosophila embryo. We applied multi-color, time-lapse imaging of living embryos and SIESTA, an integrated tool for automated and semi-automated cell segmentation, tracking, and analysis of image sequences. Using SIESTA, we identified cycles of contraction and expansion of the apical surface in intercalating cells and characterized them at the molecular, cellular, and tissue scales. We demonstrate that apical oscillations are anisotropic, and this anisotropy depends on the presence of intact cell-cell junctions and spatial cues provided by the anterior-posterior patterning system. Oscillatory cell behaviors during axis elongation are associated with the hierarchical assembly and disassembly of contractile actomyosin structures at the medial cortex of the cell, with actin localization preceding myosin II and with the localization of both proteins preceding changes in cell shape. We discuss models to explain how the architecture of cytoskeletal networks regulates their contractile behavior and the mechanisms that give rise to oscillatory cell behaviors in intercalating cells.

  1. Structural Model of the Extracellular Assembly of the TCR-CD3 Complex.

    Science.gov (United States)

    Natarajan, Aswin; Nadarajah, Vidushan; Felsovalyi, Klara; Wang, Wenjuan; Jeyachandran, Vivian R; Wasson, Riley A; Cardozo, Timothy; Bracken, Clay; Krogsgaard, Michelle

    2016-03-29

    Antigen recognition of peptide-major histocompatibility complexes (pMHCs) by T cells, a key step in initiating adaptive immune responses, is performed by the T cell receptor (TCR) bound to CD3 heterodimers. However, the biophysical basis of the transmission of TCR-CD3 extracellular interaction into a productive intracellular signaling sequence remains incomplete. Here we used nuclear magnetic resonance (NMR) spectroscopy combined with mutational analysis and computational docking to derive a structural model of the extracellular TCR-CD3 assembly. In the inactivated state, CD3γε interacts with the helix 3 and helix 4-F strand regions of the TCR Cβ subunit, whereas CD3δε interacts with the F and C strand regions of the TCR Cα subunit in this model, placing the CD3 subunits on opposing sides of the TCR. This work identifies the molecular contacts between the TCR and CD3 subunits, identifying a physical basis for transmitting an activating signal through the complex. PMID:26997265

  2. Structural Model of the Extracellular Assembly of the TCR-CD3 Complex

    Directory of Open Access Journals (Sweden)

    Aswin Natarajan

    2016-03-01

    Full Text Available Antigen recognition of peptide-major histocompatibility complexes (pMHCs by T cells, a key step in initiating adaptive immune responses, is performed by the T cell receptor (TCR bound to CD3 heterodimers. However, the biophysical basis of the transmission of TCR-CD3 extracellular interaction into a productive intracellular signaling sequence remains incomplete. Here we used nuclear magnetic resonance (NMR spectroscopy combined with mutational analysis and computational docking to derive a structural model of the extracellular TCR-CD3 assembly. In the inactivated state, CD3γε interacts with the helix 3 and helix 4-F strand regions of the TCR Cβ subunit, whereas CD3δε interacts with the F and C strand regions of the TCR Cα subunit in this model, placing the CD3 subunits on opposing sides of the TCR. This work identifies the molecular contacts between the TCR and CD3 subunits, identifying a physical basis for transmitting an activating signal through the complex.

  3. Space structure capturing and assembling by experimental free-floating robot satellite (EFFORTS) simulators

    Science.gov (United States)

    Yoshida, K.

    1993-09-01

    In order to study and validate practical availability of control schemes for in-orbit operational free-floating robots, a research group at the Tokyo Institute of Technology has developed the Experimental Free-FlOating RoboT Satellite (EFFORTS-I and II) simulators, which enable to examine 2-dimensional pseudo-micro gravity motion dynamics by air lift system. The robot model comprising a satellite base body and articulated manipulator arms with grippers and wrist force sensors, makes horizontal motion without mechanical disturbances or external forces. This paper presents the control methods and experimental results for spacecraft/manipulator control paying attention to the reaction dynamics, and assembly and deployment operation of space structures. The paper focuses the discussion of (1) hardware design of EFFORTS simulators, (2) dynamic modeling and a basic control concept for space free-floating manipulators, (3) satellite attitude control coordinating with manipulator dynamics, (4) practical force control for dexterous manipulation, and (5) experimental results on above topics.

  4. Polarization switching and patterning in self-assembled peptide tubular structures

    Science.gov (United States)

    Bdikin, Igor; Bystrov, Vladimir; Delgadillo, Ivonne; Gracio, José; Kopyl, Svitlana; Wojtas, Maciej; Mishina, Elena; Sigov, Alexander; Kholkin, Andrei L.

    2012-04-01

    Self-assembled peptide nanotubes are unique nanoscale objects that have great potential for a multitude of applications, including biosensors, nanotemplates, tissue engineering, biosurfactants, etc. The discovery of strong piezoactivity and polar properties in aromatic dipeptides [A. Kholkin, N. Amdursky, I. Bdikin, E. Gazit, and G. Rosenman, ACS Nano 4, 610 (2010)] opened up a new perspective for their use as biocompatible nanoactuators, nanomotors, and molecular machines. Another, as yet unexplored functional property is the ability to switch polarization and create artificial polarization patterns useful in various electronic and optical applications. In this work, we demonstrate that diphenylalanine peptide nanotubes are indeed electrically switchable if annealed at a temperature of about 150 °C. The new orthorhombic antipolar structure that appears after annealing allows for the existence of a radial polarization component, which is directly probed by piezoresponse force microscopy (PFM) measurements. Observation of the relatively stable polarization patterns and hysteresis loops via PFM testifies to the local reorientation of molecular dipoles in the radial direction. The experimental results are complemented with rigorous molecular calculations and create a solid background of electric-field induced deformation of aromatic rings and corresponding polarization switching in this emergent material.

  5. Structure and Properties of Nano- and Meso-Scale Materials Prepared by Designed Self-Assembly of Nanoparticles

    Science.gov (United States)

    Lukach, Ariella

    The work presented in this thesis explores the homo- and co-assembly process, structural characteristics and properties of nano- and meso-scale, one- and three-dimensional structures composed of nanoscale building blocks. In chapter 3, we developed a method for terminating the colloidal polymerization process of gold nanorods by post-assembly photocrosslinking of polymer ligands. By functionalizing gold nanorods with a hydrophobic polymer containing pendant double bonds, we were able to compartmentalize a hydrophobic photoinitiator. We could then suppress the association ability of the polymer ligands by covalently crosslinking them using photoirradiation. The averaged aggregation number of the polymers could be predicted from the kinetics of molecular step-growth polymerization. Furthermore, we found that following crosslinking, the inert-rod distance reduced, and the nanorod co-linearity increased, both allowing for better electromagnetic coupling between the nanorods. In chapter 4, we further explored the resemblance between colloidal and molecular polymerization reactions by applying strategies from molecular copolymerization to the co-assembly of gold nanorods with different dimensions into random and block copolymer structures (plasmonic copolymers). The approach was extended to the co-assembly of random copolymers of gold and palladium nanorods. We showed that the formation of random copolymers is achieved regardless of the composition, size, or concentration if both co-monomers are present at the beginning of the copolymerization. Block copolymers were prepared by combining one pre-polymer with the second monomer, or two pre-polymers. A kinetic model validated and further expanded the kinetic theories developed for molecular copolymerization reactions. Chapters 5 and 6 explore a bottom-up method to produce composite materials from spherical nanoparticles with different core-composition, surface-characteristics, and concentrations and cellulose nanocrystals

  6. Still Heart Encodes a Structural HMT, SMYD1b, with Chaperone-Like Function during Fast Muscle Sarcomere Assembly.

    Directory of Open Access Journals (Sweden)

    Kendal Prill

    Full Text Available The vertebrate sarcomere is a complex and highly organized contractile structure whose assembly and function requires the coordination of hundreds of proteins. Proteins require proper folding and incorporation into the sarcomere by assembly factors, and they must also be maintained and replaced due to the constant physical stress of muscle contraction. Zebrafish mutants affecting muscle assembly and maintenance have proven to be an ideal tool for identification and analysis of factors necessary for these processes. The still heart mutant was identified due to motility defects and a nonfunctional heart. The cognate gene for the mutant was shown to be smyd1b and the still heart mutation results in an early nonsense codon. SMYD1 mutants show a lack of heart looping and chamber definition due to a lack of expression of heart morphogenesis factors gata4, gata5 and hand2. On a cellular level, fast muscle fibers in homozygous mutants do not form mature sarcomeres due to the lack of fast muscle myosin incorporation by SMYD1b when sarcomeres are first being assembled (19hpf, supporting SMYD1b as an assembly protein during sarcomere formation.

  7. Functional architectures based on self-assembly of bio-inspired dipeptides: Structure modulation and its photoelectronic applications.

    Science.gov (United States)

    Chen, Chengjun; Liu, Kai; Li, Junbai; Yan, Xuehai

    2015-11-01

    Getting inspiration from nature and further developing functional architectures provides an effective way to design innovative materials and systems. Among bio-inspired materials, dipeptides and its self-assembled architectures with functionalities have recently been the subject of intensive studies. However, there is still a great challenge to explore its applications likely due to the lack of effective adaptation of their self-assembled structures as well as a lack of understanding of the self-assembly mechanisms. In this context, taking diphenylalanine (FF, a core recognition motif for molecular self-assembly of the Alzheimer's β-amyloid polypeptides) as a model of bio-inspired dipeptides, recent strategies on modulation of dipeptide-based architectures were introduced with regard to both covalent (architectures modulation by coupling functional groups) and non-covalent ways (controlled architectures by different assembly pathways). Then, applications are highlighted in some newly emerging fields of innovative photoelectronic devices and materials, such as artificial photosynthetic systems for renewable solar energy storage and renewable optical waveguiding materials for optoelectronic devices. At last, the challenges and future perspectives of these bio-inspired dipeptides are also addressed.

  8. Functional architectures based on self-assembly of bio-inspired dipeptides: Structure modulation and its photoelectronic applications.

    Science.gov (United States)

    Chen, Chengjun; Liu, Kai; Li, Junbai; Yan, Xuehai

    2015-11-01

    Getting inspiration from nature and further developing functional architectures provides an effective way to design innovative materials and systems. Among bio-inspired materials, dipeptides and its self-assembled architectures with functionalities have recently been the subject of intensive studies. However, there is still a great challenge to explore its applications likely due to the lack of effective adaptation of their self-assembled structures as well as a lack of understanding of the self-assembly mechanisms. In this context, taking diphenylalanine (FF, a core recognition motif for molecular self-assembly of the Alzheimer's β-amyloid polypeptides) as a model of bio-inspired dipeptides, recent strategies on modulation of dipeptide-based architectures were introduced with regard to both covalent (architectures modulation by coupling functional groups) and non-covalent ways (controlled architectures by different assembly pathways). Then, applications are highlighted in some newly emerging fields of innovative photoelectronic devices and materials, such as artificial photosynthetic systems for renewable solar energy storage and renewable optical waveguiding materials for optoelectronic devices. At last, the challenges and future perspectives of these bio-inspired dipeptides are also addressed. PMID:26365127

  9. Crystal structure of Spy0129, a Streptococcus pyogenes class B sortase involved in pilus assembly.

    Directory of Open Access Journals (Sweden)

    Hae Joo Kang

    Full Text Available Sortase enzymes are cysteine transpeptidases that mediate the covalent attachment of substrate proteins to the cell walls of gram-positive bacteria, and thereby play a crucial role in virulence, infection and colonisation by pathogens. Many cell-surface proteins are anchored by the housekeeping sortase SrtA but other more specialised sortases exist that attach sub-sets of proteins or function in pilus assembly. The sortase Spy0129, or SrtC1, from the M1 SF370 strain of Streptococcus pyogenes is responsible for generating the covalent linkages between the pilin subunits in the pili of this organism. The crystal structure of Spy0129 has been determined at 2.3 Å resolution (R = 20.4%, Rfree  = 26.0%. The structure shows that Spy0129 is a class B sortase, in contrast to other characterised pilin polymerases, which belong to class C. Spy0129 lacks a flap believed to function in substrate recognition in class C enzymes and instead has an elaborated β6/β7 loop. The two independent Spy0129 molecules in the crystal show differences in the positions and orientations of the catalytic Cys and His residues, Cys221 and His126, correlated with movements of the β7/β8 and β4/β5 loops that respectively follow these residues. Bound zinc ions stabilise these alternative conformations in the crystal. This conformational variability is likely to be important for function although there is no evidence that zinc is involved in vivo.

  10. The effect of multivalent cations and Tau on paclitaxel-stabilized microtubule assembly, disassembly, and structure.

    Science.gov (United States)

    Safinya, Cyrus R; Chung, Peter J; Song, Chaeyeon; Li, Youli; Ewert, Kai K; Choi, Myung Chul

    2016-06-01

    In this review we describe recent studies directed at understanding the formation of novel nanoscale assemblies in biological materials systems. In particular, we focus on the effects of multivalent cations, and separately, of microtubule-associated protein (MAP) Tau, on microtubule (MT) ordering (bundling), MT disassembly, and MT structure. Counter-ion directed bundling of paclitaxel-stabilized MTs is a model electrostatic system, which parallels efforts to understand MT bundling by intrinsically disordered proteins (typically biological polyampholytes) expressed in neurons. We describe studies, which reveal an unexpected transition from tightly spaced MT bundles to loose bundles consisting of strings of MTs as the valence of the cationic counter-ion decreases from Z=3 to Z=2. This transition is not predicted by any current theories of polyelectrolytes. Notably, studies of a larger series of divalent counter-ions reveal strong ion specific effects. Divalent counter-ions may either bundle or depolymerize paclitaxel-stabilized MTs. The ion concentration required for depolymerization decreases with increasing atomic number. In a more biologically related system we review synchrotron small angle x-ray scattering (SAXS) studies on the effect of the Tau on the structure of paclitaxel-stabilized MTs. The electrostatic binding of MAP Tau isoforms leads to an increase in the average radius of microtubules with increasing Tau coverage (i.e. a re-distribution of protofilament numbers in MTs). Finally, inspired by MTs as model nanotubes, we briefly describe other more robust lipid-based cylindrical nanostructures, which may have technological applications, for example, in drug encapsulation and delivery. PMID:26684364

  11. Structural changes in mature rat thymus under the systematic exposure to +Gx acceleration and Glutarginum

    OpenAIRE

    Maxim A. Kriventsov; Gennady A. Moroz

    2013-01-01

    Objective: Experimental work was designed primary to study morphological and functional changes in the mature rat's thymus under systematic exposure to +Gx acceleration. Secondary task is to determine a possible corrective potential of Glutarginum (L-arginine and L-glutamic acid). Methods: Mature male Wistar rats were exposed to systematic +Gx acceleration (9G, 10 min daily, 10 times). Morphology of the thymus was investigated by light and transmission electron microscopy. Results: Analysis o...

  12. Structure of a Bacterial Virus DNA-Injection Protein Complex Reveals a Decameric Assembly with a Constricted Molecular Channel.

    Directory of Open Access Journals (Sweden)

    Haiyan Zhao

    Full Text Available The multi-layered cell envelope structure of Gram-negative bacteria represents significant physical and chemical barriers for short-tailed phages to inject phage DNA into the host cytoplasm. Here we show that a DNA-injection protein of bacteriophage Sf6, gp12, forms a 465-kDa, decameric assembly in vitro. The electron microscopic structure of the gp12 assembly shows a ~150-Å, mushroom-like architecture consisting of a crown domain and a tube-like domain, which embraces a 25-Å-wide channel that could precisely accommodate dsDNA. The constricted channel suggests that gp12 mediates rapid, uni-directional injection of phage DNA into host cells by providing a molecular conduit for DNA translocation. The assembly exhibits a 10-fold symmetry, which may be a common feature among DNA-injection proteins of P22-like phages and may suggest a symmetry mismatch with respect to the 6-fold symmetric phage tail. The gp12 monomer is highly flexible in solution, supporting a mechanism for translocation of the protein through the conduit of the phage tail toward the host cell envelope, where it assembles into a DNA-injection device.

  13. Temperature-induced reversible self-assembly of diphenylalanine peptide and the structural transition from organogel to crystalline nanowires.

    Science.gov (United States)

    Huang, Renliang; Wang, Yuefei; Qi, Wei; Su, Rongxin; He, Zhimin

    2014-01-01

    Controlling the self-assembly of diphenylalanine peptide (FF) into various nanoarchitectures has received great amounts of attention in recent years. Here, we report the temperature-induced reversible self-assembly of diphenylalanine peptide to microtubes, nanowires, or organogel in different solvents. We also find that the organogel in isopropanol transforms into crystalline flakes or nanowires when the temperature increases. The reversible self-assembly in polar solvents may be mainly controlled by electronic and aromatic interactions between the FF molecules themselves, which is associated with the dissociation equilibrium and significantly influenced by temperature. We found that the organogel in the isopropanol solvent made a unique transition to crystalline structures, a process that is driven by temperature and may be kinetically controlled. During the heating-cooling process, FF preferentially self-assembles to metastable nanofibers and organogel. They further transform to thermodynamically stable crystal structures via molecular rearrangement after introducing an external energy, such as the increasing temperature used in this study. The strategy demonstrated in this study provides an efficient way to controllably fabricate smart, temperature-responsive peptide nanomaterials and enriches the understanding of the growth mechanism of diphenylalanine peptide nanostructures. PMID:25520600

  14. Structures of self-assembled amphiphilic peptide-heterodimers: effects of concentration, pH, temperature and ionic strength

    KAUST Repository

    Luo, Zhongli

    2010-01-01

    The amphiphilic double-tail peptides AXG were studied regarding secondary structure and self-assembly in aqueous solution. The two tails A = Ala 6 and G = Gly6 are connected by a central pair X of hydrophilic residues, X being two aspartic acids in ADG, two lysines in AKG and two arginines in ARG. The peptide AD (Ala6Asp) served as a single-tail reference. The secondary structure of the four peptides was characterized by circular dichroism spectroscopy under a wide range of peptide concentrations (0.01-0.8 mM), temperatures (20-98 °C), pHs (4-9.5) and ionic strengths. In salt-free water both ADG and AD form a β-sheet type of structure at high concentration, low pH and low temperature, in a peptide-peptide driven assembly of individual peptides. The transition has a two-state character for ADG but not for AD, which indicates that the added tail in ADG makes the assembly more cooperative. By comparison the secondary structures of AKG and ARG are comparatively stable over the large range of conditions covered. According to dynamic light scattering the two-tail peptides form supra-molecular aggregates in water, but high-resolution AFM-imaging indicate that ordered (self-assembled) structures are only formed when salt (0.1 M NaCl) is added. Since the CD-studies indicate that the NaCl has only a minor effect on the peptide secondary structure we propose that the main role of the added salt is to screen the electrostatic repulsion between the peptide building blocks. According to the AFM images ADG and AKG support a correlation between nanofibers and a β-sheet or unordered secondary structure, whereas ARG forms fibers in spite of lacking β-sheet structure. Since the AKG and ARG double-tail peptides self-assemble into distinct nanostructures while their secondary structures are resistant to environment factors, these new peptides show potential as robust building blocks for nano-materials in various medical and nanobiotechnical applications. © 2010 The Royal Society

  15. 3.5A cryoEM structure of hepatitis B virus core assembled from full-length core protein.

    Directory of Open Access Journals (Sweden)

    Xuekui Yu

    Full Text Available The capsid shell of infectious hepatitis B virus (HBV is composed of 240 copies of a single protein called HBV core antigen (HBc. An atomic model of a core assembled from truncated HBc was determined previously by X-ray crystallography. In an attempt to obtain atomic structural information of HBV core in a near native, non-crystalline environment, we reconstructed a 3.5Å-resolution structure of a recombinant core assembled from full-length HBc by cryo electron microscopy (cryoEM and derived an atomic model. The structure shows that the 240 molecules of full-length HBc form a core with two layers. The outer layer, composed of the N-terminal assembly domain, is similar to the crystal structure of the truncated HBc, but has three differences. First, unlike the crystal structure, our cryoEM structure shows no disulfide bond between the Cys61 residues of the two subunits within the dimer building block, indicating such bond is not required for core formation. Second, our cryoEM structure reveals up to four more residues in the linker region (amino acids 140-149. Third, the loops in the cryoEM structures containing this linker region in subunits B and C are oriented differently (~30° and ~90° from their counterparts in the crystal structure. The inner layer, composed of the C-terminal arginine-rich domain (ARD and the ARD-bound RNAs, is partially-ordered and connected with the outer layer through linkers positioned around the two-fold axes. Weak densities emanate from the rims of positively charged channels through the icosahedral three-fold and local three-fold axes. We attribute these densities to the exposed portions of some ARDs, thus explaining ARD's accessibility by proteases and antibodies. Our data supports a role of ARD in mediating communication between inside and outside of the core during HBV maturation and envelopment.

  16. Ceramic Composite Mechanical Fastener System for High-Temperature Structural Assemblies Project

    Data.gov (United States)

    National Aeronautics and Space Administration — Under Phase I, the feasibility of a novel thermal stress-free ceramic composite mechanical fastener system suitable for assembly of high-temperature composite...

  17. Assembly scaffold NifEN: A structural and functional homolog of the nitrogenase catalytic component.

    Science.gov (United States)

    Fay, Aaron W; Blank, Michael A; Rebelein, Johannes G; Lee, Chi Chung; Ribbe, Markus W; Hedman, Britt; Hodgson, Keith O; Hu, Yilin

    2016-08-23

    NifEN is a biosynthetic scaffold for the cofactor of Mo-nitrogenase (designated the M-cluster). Previous studies have revealed the sequence and structural homology between NifEN and NifDK, the catalytic component of nitrogenase. However, direct proof for the functional homology between the two proteins has remained elusive. Here we show that, upon maturation of a cofactor precursor (designated the L-cluster) on NifEN, the cluster species extracted from NifEN is spectroscopically equivalent and functionally interchangeable with the native M-cluster extracted from NifDK. Both extracted clusters display nearly indistinguishable EPR features, X-ray absorption spectroscopy/extended X-ray absorption fine structure (XAS/EXAFS) spectra and reconstitution activities, firmly establishing the M-cluster-bound NifEN (designated NifEN(M)) as the only protein other than NifDK to house the unique nitrogenase cofactor. Iron chelation experiments demonstrate a relocation of the cluster from the surface to its binding site within NifEN(M) upon maturation, which parallels the insertion of M-cluster into an analogous binding site in NifDK, whereas metal analyses suggest an asymmetric conformation of NifEN(M) with an M-cluster in one αβ-half and an empty cluster-binding site in the other αβ-half, which led to the proposal of a stepwise assembly mechanism of the M-cluster in the two αβ-dimers of NifEN. Perhaps most importantly, NifEN(M) displays comparable ATP-independent substrate-reducing profiles to those of NifDK, which establishes the M-cluster-bound αβ-dimer of NifEN(M) as a structural and functional mimic of one catalytic αβ-half of NifDK while suggesting the potential of this protein as a useful tool for further investigations of the mechanistic details of nitrogenase. PMID:27506795

  18. An introduction to acceleration mechanisms

    International Nuclear Information System (INIS)

    This paper discusses the acceleration of charged particles by electromagnetic fields, i.e., by fields that are produced by the motion of other charged particles driven by some power source. The mechanisms that are discussed include: Ponderamotive Forces, Acceleration, Plasma Beat Wave Acceleration, Inverse Free Electron Laser Acceleration, Inverse Cerenkov Acceleration, Gravity Acceleration, 2D Linac Acceleration and Conventional Iris Loaded Linac Structure Acceleration

  19. Co-Assembled Supported Catalysts: Synthesis of Nano-Structured Supported Catalysts with Hierarchic Pores through Combined Flow and Radiation Induced Co-Assembled Nano-Reactors

    Directory of Open Access Journals (Sweden)

    Galip Akay

    2016-05-01

    Full Text Available A novel generic method of silica supported catalyst system generation from a fluid state is presented. The technique is based on the combined flow and radiation (such as microwave, thermal or UV induced co-assembly of the support and catalyst precursors forming nano-reactors, followed by catalyst precursor decomposition. The transformation from the precursor to supported catalyst oxide state can be controlled from a few seconds to several minutes. The resulting nano-structured micro-porous silica supported catalyst system has a surface area approaching 300 m2/g and X-ray Diffraction (XRD-based catalyst size controlled in the range of 1–10 nm in which the catalyst structure appears as lamellar sheets sandwiched between the catalyst support. These catalyst characteristics are dependent primarily on the processing history as well as the catalyst (Fe, Co and Ni studied when the catalyst/support molar ratio is typically 0.1–2. In addition, Ca, Mn and Cu were used as co-catalysts with Fe and Co in the evaluation of the mechanism of catalyst generation. Based on extensive XRD, Scanning Electron Microscopy (SEM and Transmission Electron Microscopy (TEM studies, the micro- and nano-structure of the catalyst system were evaluated. It was found that the catalyst and silica support form extensive 0.6–2 nm thick lamellar sheets of 10–100 nm planar dimensions. In these lamellae, the alternate silica support and catalyst layer appear in the form of a bar-code structure. When these lamellae structures pack, they form the walls of a micro-porous catalyst system which typically has a density of 0.2 g/cm3. A tentative mechanism of catalyst nano-structure formation is provided based on the rheology and fluid mechanics of the catalyst/support precursor fluid as well as co-assembly nano-reactor formation during processing. In order to achieve these structures and characteristics, catalyst support must be in the form of silane coated silica nano

  20. Structural assembly effects of Pt nanoparticle-carbon nanotube-polyaniline nanocomposites on the enhancement of biohydrogen fuel cell performance

    Energy Technology Data Exchange (ETDEWEB)

    Hoa, Le Quynh, E-mail: hoa@p.eng.osaka-u.ac.jp [Department of Applied Physics, Graduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka 565-0871 (Japan); Sugano, Yasuhito; Yoshikawa, Hiroyuki; Saito, Masato [Department of Applied Physics, Graduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka 565-0871 (Japan); Tamiya, Eiichi, E-mail: tamiya@ap.eng.osaka-u.ac.jp [Department of Applied Physics, Graduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka 565-0871 (Japan)

    2011-11-30

    Graphical abstract: - Abstract: In this work, we designed various polyaniline (PANI) nanocomposites with platinum (Pt) nanoparticle-decorated multi-walled carbon nanotubes (MWCNTs), employed them as anodic catalysts, and studied their structural assembly effects with regard to enhancing biohydrogen fuel cell performance. Of two proposed structures, the PANI/Pt/MWCNTs multilayer nanocomposites showed superior electrocatalytic activities in the hydrogen oxidation reaction and in fuel cell power density relative to the Pt/MWCNTs-PANI core-shell design. These enhancements were attributed to the active interface formed between the Pt nanoparticles and polyaniline nanofibers, where the higher electronic and ionic conductivities of the thin PANI nanofiber layers in contact with Pt active sites were better than with the PANI bound Pt/MWCNTs. We also investigated the change in the electronic state of the composites and the charge-transfer rate caused by varying the structural assembly. Finally, the role of each catalyst component was examined to understand its individual effect on fuel cell performance and to understand its structural assembly effect on enhanced power density.

  1. Secondary Structures of Ubiquitin Ions Soft-Landed onto Self-Assembled Monolayer Surfaces

    Energy Technology Data Exchange (ETDEWEB)

    Hu, Qichi; Laskin, Julia

    2016-06-09

    The secondary structures of multiply charged ubiquitin ions soft-landed onto self-assembled monolayer (SAM) surfaces were studied using in situ infrared reflection-absorption spectroscopy (IRRAS). Two charge states of ubiquitin, 5+ and 13+, were mass selected separately from a mixture of different charge states produced by electrospray ionization (ESI). The low 5+ charge state represents a native-like folded state of ubiquitin, while the high 13+ charge state assumes an extended, almost linear conformation. Each of the two charge states was soft-landed onto a CH3- and COOH-terminated SAM of alkylthiols on gold (HSAM and COOH-SAM). HSAM is a hydrophobic surface known to stabilize helical conformations of soft-landed protonated peptides, whereas COOH-SAM is a hydrophilic surface that preferentially stabilizes β-sheet conformations. IRRAS spectra of the soft-landed ubiquitin ions were acquired as a function of time during and after ion soft-landing. Similar to smaller peptide ions, helical conformations of ubiquitin are found to be more abundant on HSAM, while the relative abundance of β-sheet conformations increases on COOH-SAM. The initial charge state of ubiquitin also has a pronounced effect on its conformation on the surface. Specifically, on both surfaces, a higher relative abundance of helical conformations and lower relative abundance of β-sheet conformations is observed for the 13+ charge state compared to the 5+ charge state. Time-resolved experiments indicate that the α-helical band in the spectrum of the 13+ charge state slowly increases with time on the HSAM surface and decreases in the spectrum of the 13+ charge state on COOH-SAM. These results further support the preference of the hydrophobic HSAM surface toward helical conformations and demonstrate that soft-landed protein ions may undergo slow conformational changes during and after deposition.

  2. Structural Performance Assessment Based on Statistical and Wavelet Analysis of Acceleration Measurements of a Building during an Earthquake

    OpenAIRE

    Mosbeh R. Kaloop; Jong Wan Hu; Mohamed A. Sayed; Jiyoung Seong

    2016-01-01

    This study introduces the analysis of structural health monitoring (SHM) system based on acceleration measurements during an earthquake. The SHM system is applied to assess the performance investigation of the administration building in Seoul National University of Education, South Korea. The statistical and wavelet analysis methods are applied to investigate and assess the performance of the building during an earthquake shaking which took place on March 31, 2014. The results indicate that (...

  3. Nitrogen and argon doping of niobium for superconducting radio frequency cavities: a pathway to highly efficient accelerating structures

    OpenAIRE

    Grassellino, A.; Romanenko, A.; Melnychuk, O.; Trenikhina, Y.; Crawford, A; Rowe, A.; Wong, M; Sergatskov, D.; Khabiboulline, T.; Barkov, F.

    2013-01-01

    We report a surface treatment that systematically improves the quality factor of niobium radio frequency cavities beyond the expected limit for niobium. A combination of annealing in a partial pressure of nitrogen or argon gas and subsequent electropolishing of the niobium cavity surface leads to unprecedented low values of the microwave surface resistance, and an improvement in the efficiency of the accelerating structures up to a factor of 3, reducing the cryogenic load of superconducting c...

  4. Production of Structural Colors with High Contrast and Wide Viewing Angles from Assemblies of Polypyrrole Black Coated Polystyrene Nanoparticles.

    Science.gov (United States)

    Yang, Xiaoming; Ge, Dengteng; Wu, Gaoxiang; Liao, Zhiwei; Yang, Shu

    2016-06-29

    Structural color with wide viewing angles has enormous potential applications in pigment, ink formulation, displays, and sensors. However, colors obtained from colloidal assemblies with low refractive index contrast or without black additives typically appear pale. Here, we prepare polypyrrole (PPy) black coated polystyrene (PS) nanoparticles and demonstrate well-defined colors with high color contrast and wide viewing angles under ambient light. Depending on the loading of pyrrole during polymerization, PPy nanogranules of different sizes and coverages are grafted to the surface of PS nanoparticles. The bumpy particles can self-assemble into quasi-amorphous arrays, resulting in low angle dependent structure colors under ambient light. The color can be tuned by the size of the PS nanoparticles, and the presence of the PPy black on PS nanoparticles enhances the color contrast by suppressing incoherent and multiple scattering.

  5. VESICULAR TRANSPORT. A structure of the COPI coat and the role of coat proteins in membrane vesicle assembly.

    Science.gov (United States)

    Dodonova, S O; Diestelkoetter-Bachert, P; von Appen, A; Hagen, W J H; Beck, R; Beck, M; Wieland, F; Briggs, J A G

    2015-07-10

    Transport of material within cells is mediated by trafficking vesicles that bud from one cellular compartment and fuse with another. Formation of a trafficking vesicle is driven by membrane coats that localize cargo and polymerize into cages to bend the membrane. Although extensive structural information is available for components of these coats, the heterogeneity of trafficking vesicles has prevented an understanding of how complete membrane coats assemble on the membrane. We combined cryo-electron tomography, subtomogram averaging, and cross-linking mass spectrometry to derive a complete model of the assembled coat protein complex I (COPI) coat involved in traffic between the Golgi and the endoplasmic reticulum. The highly interconnected COPI coat structure contradicted the current "adaptor-and-cage" understanding of coated vesicle formation.

  6. Magnetism, structures and stabilities of cluster assembled TM@Si nanotubes (TM = Cr, Mn and Fe): a density functional study.

    Science.gov (United States)

    Dhaka, Kapil; Bandyopadhyay, Debashis

    2016-08-01

    The present study reports transition metal (TM = Cr, Mn and Fe) doped silicon nanotubes with tunable band structures and magnetic properties by careful selection of cluster assemblies as building blocks using the first-principles density functional theory. We found that the transition metal doping and in addition, the hydrogen termination process can stabilize the pure silicon nanoclusters or cluster assemblies and then it could be extended as magnetic nanotubes with finite magnetic moments. Study of the band structures and density of states (DOS) of different empty and TM doped nanotubes (Type 1 to Type 4) show that these nanotubes are useful as metals, semiconductors, semi-metals and half-metals. These designer magnetic materials could be useful in spintronics and magnetic devices of nanoscale order. PMID:27430742

  7. Application and Implementation of the Structured Assembly Process Planning in A Auto Enterprise Based on TS16949

    Directory of Open Access Journals (Sweden)

    Sun Jiakun

    2016-01-01

    Full Text Available Process planning is the key link that connects the product design and manufacture. In order to continually improve the effectiveness and efficiency of process planning an auto enterprise in consistent with the process management requirements of TS16949, the requirements for assembly process planning is analysed and the main problems affecting the design and production efficiency are discussed. The infrastructure of the structured process planning and management platform is constructed combing the management technology and TS16949 quality system, then the structured PPPR (product, process, plant and resourcemodel is reintegrated to analyze the relationships among the objects with the object-oriented method. In the end, with the principles of maintaining conveniently and operating practically, the assembly process planning and management system is implemented according to the characteristics of the process in the enterprise, and the main function modules of the system are described.

  8. Structural and superconducting properties of sputter-deposited niobium films for applications in RF accelerating cavities

    CERN Document Server

    Peck, M A

    2000-01-01

    Niobium sputter-coated copper resonators are successfully employed in operating particle accelerators, the most outstanding example being LEP2 at CERN. In this work recent progress in the understanding of the basic principles governing their behavior has been presented. Studies have been carried out on 1.5 GHz resonators operated in the TM010 mode. At the present stage of the study, no fundamental limitation has been found, which would prevent the use of this technology for future high-field, high-Q accelerating cavities.

  9. Development of accelerating structure of 9 MeV C-band electron linac

    International Nuclear Information System (INIS)

    In this paper, the design and performance characteristics of accelerating guide for C-band SW electron linac are discussed. The guide can accelerate electrons to 9 MeV or 6 MeV. Its length is about 620mm, and a Pierce electron gun has been used. A 2.5MW pulsed magnetron at 5712 MHz is served as the guide's RF power source. The two energy modes are performed by turning RF power source and the injecting voltage of electron gun. (authors)

  10. Artificial leaf structures as a UV detector formed by the self-assembly of ZnO nanoparticles

    Science.gov (United States)

    Wang, Fei; Zhao, Dongxu; Guo, Zhen; Liu, Lei; Zhang, Zhenzhong; Shen, Dezhen

    2013-03-01

    Artificial leaf structures have been fabricated by the self-assembly of ZnO nanoparticles. A hydrothermal method was used to synthesize the nanoparticles. The self-assembly patterns showed asymmetric dendritic morphologies, larger surface-to-volume ratios, a broad absorption band and high resistance. A non-equilibrium two-stage-formation process included diffusion limited aggregation, and the phase-field model was introduced to explain the formation mechanism of the pattern. A high-performance ultraviolet detector was fabricated on the artificial leaf structures, which showed that the current under the irradiation of a UV lamp (1.21 mW cm-2) was about 104 times greater than in the dark. The various and functional properties of the pattern show us the vast prospects of potential applications for light harvesting systems and other optical-electric devices.Artificial leaf structures have been fabricated by the self-assembly of ZnO nanoparticles. A hydrothermal method was used to synthesize the nanoparticles. The self-assembly patterns showed asymmetric dendritic morphologies, larger surface-to-volume ratios, a broad absorption band and high resistance. A non-equilibrium two-stage-formation process included diffusion limited aggregation, and the phase-field model was introduced to explain the formation mechanism of the pattern. A high-performance ultraviolet detector was fabricated on the artificial leaf structures, which showed that the current under the irradiation of a UV lamp (1.21 mW cm-2) was about 104 times greater than in the dark. The various and functional properties of the pattern show us the vast prospects of potential applications for light harvesting systems and other optical-electric devices. Electronic supplementary information (ESI) available. See DOI: 10.1039/c3nr33748k

  11. Design of structural assembler language system%结构化汇编语言系统的设计

    Institute of Scientific and Technical Information of China (English)

    郑建标

    2001-01-01

    介绍了一种结构化汇编语言系统,以及在设计与软件编写过程中有关的设计思路与关键问题的解决方案等.%The author introduced a structural assembler system and its designing, resolving scheme of the period of the designing and programming.

  12. Initiation of assembly and association of the structural elements of a bacterial pilus depend on two specialized tip proteins.

    OpenAIRE

    Jacob-Dubuisson, F; Heuser, J.; Dodson, K.; Normark, S; Hultgren, S.

    1993-01-01

    Uropathogenic Escherichia coli produce heteropolymeric surface fibers called P pili, which present an adhesin at their tip that specifically recognizes globoside receptors on the host uroepithelium. The initial attachment step is thought to be essential for pathogenesis. P pili are composite fibers consisting of a thin tip fibrillum joined end to end to a rigid helical rod. Here we show that the ordered assembly of these structures requires the activity of two proteins that are minor componen...

  13. X-band accelerator structures: On going R&D at the INFN

    Science.gov (United States)

    Gatti, G.; Marcelli, A.; Spataro, B.; Dolgashev, V.; Lewandowski, J.; Tantawi, S. G.; Yeremian, A. D.; Higashi, Y.; Rosenzweig, J.; Sarti, S.; Caliendo, C.; Castorina, G.; Cibin, G.; Carfora, L.; Leonardi, O.; Rigato, V.; Campostrini, M.

    2016-09-01

    The next generation of accelerators, from the compact to the large infrastructure dedicated to high energy physics, is highly demanding in terms of accelerating gradients. To upgrade performances of X band linacs at 11.424 GHz many resources are devoted to achieve high accelerating gradients and at the same time to obtain a high reliability. In the framework of a three-year funded project by the Vth Committee of the INFN to the Laboratori Nazionali di Frascati (LNF) and to the Laboratori Nazionali di Legnaro (LNL). Within a broad international collaboration the LNF has been involved in the design, manufacture and test of compact high power standing wave (SW) sections operating at high frequency while LNL is actively involved in the development of new materials and multilayers using PVD (Physical Vapor Deposition) methods. We will report about the status of the accelerating device and of the different ongoing R&D activities and characterization procedures such as tests of different materials and metallic coatings.

  14. Mechanism of N-octadecyl-N'-maleoyl-L-phenylalanine self-assembled into supramolecular structures

    Institute of Scientific and Technical Information of China (English)

    Sheng Zu Zhang; Xin Jian Fu; Hong Wang; Ya Jiang Yang

    2008-01-01

    N-Octadecyl-N'-maleoyl-L-phenylalanine (ODMA-L-Phe) was synthesized through the condensation, deprotection and aeid-ylation reaction of BOC-L-phenylalanine, octadecylamine and maleic anhydride. ODMA-L-Phe can self-assemble in some organic solvents and turned them into thermally reversible physical supramolecular organogels. The morphology of ODMA-L-Phe aggregates was characterized by polarized optical microscopy (POM) and field emission scanning electron microscope (FE-SEM). The aggregates of ODMA-L-Phe were needle-like fibrils with diameters of approximately 100-200 nm. The mechanism of ODMA-L-Phe self-assembly in organic solvents was investigated using 1H NMR and circular dichroism (CD). The results indicated that hydrogen bonding was one of the main driving forces for the self-assembly of ODMA-L-Phe.

  15. RNA-controlled assembly of tobacco mosaic virus-derived complex structures: from nanoboomerangs to tetrapods

    Science.gov (United States)

    Eber, Fabian J.; Eiben, Sabine; Jeske, Holger; Wege, Christina

    2014-11-01

    The in vitro assembly of artificial nanotubular nucleoprotein shapes based on tobacco mosaic virus-(TMV-)-derived building blocks yielded different spatial organizations of viral coat protein subunits on genetically engineered RNA molecules, containing two or multiple TMV origins of assembly (OAs). The growth of kinked nanoboomerangs as well as of branched multipods was determined by the encapsidated RNAs. A largely simultaneous initiation at two origins and subsequent bidirectional tube elongation could be visualized by transmission electron microscopy of intermediates and final products. Collision of the nascent tubes' ends produced angular particles with well-defined arm lengths. RNAs with three to five OAs generated branched multipods with a maximum of four arms. The potential of such an RNA-directed self-assembly of uncommon nanotubular architectures for the fabrication of complex multivalent nanotemplates used in functional hybrid materials is discussed.

  16. Bio-inspired nanobowl/nanoball structures fabricated via solvent etching/swelling on nanosphere assembly patterns

    Energy Technology Data Exchange (ETDEWEB)

    Chang, Wan-Yi; Liu, Pang-Hsin; Wu, You [Department of Chemical and Materials Engineering, National University of Kaohsiung, Kaohsiung 811, Taiwan, ROC (China); Chung, Yi-Chang, E-mail: ycchung@nuk.edu.tw [Department of Chemical and Materials Engineering, National University of Kaohsiung, Kaohsiung 811, Taiwan, ROC (China); Research Center for Energy Technology and Strategy, National Cheng Kung University, Tainan 701, Taiwan, ROC (China)

    2014-11-03

    Ordered self-assembled nanopatterns have attracted much attention for their ability to mimic moth-eye structures and display unique optical properties. In the study, emulsifier-free emulsion polymerization was performed to prepare polystyrene nanospheres with uniform size distribution. Various hydrophilic monomers were added to copolymerize with styrene, including 2-hydroxyethyl methacrylate, acrylic acid, and methyl acrylic acid, respectively, to enhance the self-assembling ability of nanospheres. The nanosphere suspension was injected into an air–water interface to self-assemble a nanosphere array, and then the resulting photonic crystal film was deposited on a substrate using a scooping transfer technique. The layer-by-layer scooping transfer technique can be applied to produce 2D and 3D assembled nanosphere layers on an area as large as a 4-inch wafer. The pattern of the 2D nanosphere array was attached to a UV-curable precursor surface and then encapsulated and transferred to the crosslinked resin after UV irradiation. The sample was then immersed into some solvents which could partially swell the resin surface to produce nanoball structures or etch the surface to generate nanobowl structures. The size of the as-prepared polystyrene spheres was about 360 nm, while the feature size of the nanoballs was about 230 nm after undergoing acetonitrile swelling. The facile and inexpensive technique can be applied to produce ordered nanoball patterns for various applications, such as optical coatings, superhydrophobic coatings, biophotosensors, antireflection films, dry adhesives, and so on. - Highlights: • We prepared core-shell PS nanosphere suspensions with narrow-size-distribution. • We employed a scooping technique to fabricate large-area nanosphere monolayers. • Swelling by acetonitrile formed nanoballs on a UV resin/nanosphere laminated layer. • Etching by toluene produced nanobowl on the UV resin/nanosphere laminated layer. • The parted nanoball

  17. Vision feedback driven automated assembly of photopolymerized structures by parallel optical trapping and manipulation

    DEFF Research Database (Denmark)

    Dam, Jeppe Seidelin; Perch-Nielsen, Ivan Ryberg; Rodrigo, Peter John;

    2007-01-01

    We demonstrate how optical trapping and manipulation can be used to assemble microstructures. The microstructures we show being automatically recognized and manipulated are produced using the two-photon polymerization (2PP) technique with submicron resolution. In this work, we show identical shape......-complementary puzzle pieces being manipulated in a fluidic environment forming space-filling tessellations. By implementation of image analysis to detect the puzzle pieces, we developed a system capable of assembling a puzzle with no user interaction required. This allows for automatic gathering of sparsely scattered...

  18. Self-assembled peptide nanotubes are uniquely rigid bioinspired supramolecular structures.

    Science.gov (United States)

    Kol, Nitzan; Adler-Abramovich, Lihi; Barlam, David; Shneck, Roni Z; Gazit, Ehud; Rousso, Itay

    2005-07-01

    We recently presented a novel class of self-assembled diphenylalanine-based peptide nanotubes. Here, for the first time, we present their mechanical properties, which we directly measured through indentation type experiments using atomic force microscopy. We find that the averaged point stiffness of the nanotubes is 160 N/m, and that they have a correspondingly high Young's modulus of approximately 19 GPa, as calculated by finite element analysis. This high value places these peptide nanotubes among the stiffest biological materials presently known, making them attractive building blocks for the design and assembly of biocompatible nanodevices. PMID:16178235

  19. Self-assembly structure formation on patterned InP surfaces

    Institute of Scientific and Technical Information of China (English)

    2009-01-01

    Self-assembly of polystyrene spheres guided by patterned n-type InP substrates has been investigated. InP surfaces were patterned using a variety of methods including wet chemical etching,sputter coating,thermal evaporation,and photo lithography. The self-assembly of polystyrene spheres depended on the appearance of patterns and was affected by the deposition techniques (sputter coating and thermal evaporation) of Au micro-squares. SEM and AFM were used to characterize the surface morphologies.

  20. Selection of conformational states in self-assembled surface structures formed from an oligo(naphthylene-ethynylene) 3-bit binary switch

    DEFF Research Database (Denmark)

    Ning, Yanxiao; Cramer, Jacob Roland; Nuermaimaiti, Ajiguli;

    2015-01-01

    Supra-molecular self-assembly on surfaces often involves molecular conformational flexibility which may act to enrich the variation and complexity of the structures formed. However, systematic and explicit investigations of how molecular conformational states are selected in surface self-assembly...